Citrus Sinensis ID: 013144

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------45
Protein Sequence
MSSCSLSPYRPIYVHINNKFIGIKSINLQFSSQFPYKSTNRKLFRNVSSNSGSVGLRTIVGCRVRTGVSSNDKSFDLAPNEDEALAPNFLEFITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQV
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccEEcccccccccccEEEEcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccEEHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHccccccccccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccEEEccccccccccccEEEEccccccccccccccccccccccccHEEEEcEEEccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHEHHHHHHHHHHHHEcccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHcccccccccccccccccccHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHEHHHHHHHccHHHHcccEEcccc
Coil and Loop (DISEMBL)
msscslspyrpiyvhinNKFIGIKsinlqfssqfpykstnrklfrnvssnsgsvglrTIVGcrvrtgvssndksfdlapnedealapnflefiTSERVKVVSMLALALALCNADRVVMSVAIVPLSlahgwsrsfsgivQSSFlwgylvspiaggtlvdyyGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEgvalpamnnmvarWFPQTERARAVAIAMggftsgnaiGLVLSpilmsqagifgpfVIFGLSGFLWVLVWLSatsstpdrhpqiskYELEYILREkqkpllmgnkhkpatvippfrrllskmptWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDlrqaswfsavpWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIgltaakspvMASAWLTLAIGMKsfshsgflvnlqv
Flexible Loop (DISEMBL)
msscslspyrPIYVHINNKFIGIKSINLQFSSQFPYKSTNRKLFrnvssnsgsvglrtivgcrvrtgvssndksfdlapnEDEALAPNFLEFITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSatsstpdrhpqiSKYELEYILREKqkpllmgnkhkpatvippfRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQV
Low Complexity Region (SEG)
MSSCSLSPYRPIYVHINNKFIGIKSINLQFSSQFPYKSTNRKLFRNVSSNSGSVGLRTIVGCRVRTGVSSNDKSFDLAPNEDEALAPNFLEFITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQV
Disordered region (IsUnstruct)
*******PYRPIYVHINNKFIGIKSINLQFSSQFPYKSTNRKLFRNVSSNSGSVGLRTIVGCRVRTGV***************ALAPNFLEFITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSAT*********ISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVN***
Disordered Region (DISOPRED)
******************************************************************************************EFITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYI*********************PFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQ*
Disordered Region (DISEMBL)
MSSCSLSPYRPIYVHINNKFIGIKSINLQFSSQFPYKSTNRKLFRNVSSNSGSVGLRTIVGCRVRTGVSSNDKSFDLAPNEDEALAPNFLEFITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQV
Disordered Region (DISPRO)
****SLSPYRPIYVHINNKFIGIKSINLQFSSQFPYKSTNRKLFRNVSSNSGSVGLRTIVGCRVRT**********************FLEFITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQK***********TVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNL**
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSCSLSPYRPIYVHINNKFIGIKSINLQFSSQFPYKSTNRKLFRNVSSNSGSVGLRTIVGCRVRTGVSSNDKSFDLAPNEDEALAPNFLEFITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	449	2.2.26 [Sep-21-2011]
Q66GI9	533	Probable anion transporte	no	no	0.919	0.774	0.721	1e-166
Q8W0H5	519	Probable anion transporte	yes	no	0.795	0.687	0.701	1e-140
Q7XJR2	512	Probable anion transporte	no	no	0.935	0.820	0.473	1e-110
Q53WP9	535	Probable anion transporte	no	no	0.772	0.648	0.529	1e-101
Q652N5	591	Probable anion transporte	no	no	0.797	0.605	0.402	9e-76
Q8GX78	541	Probable anion transporte	no	no	0.768	0.637	0.402	1e-74
Q9SDI4	529	Probable anion transporte	no	no	0.768	0.652	0.413	3e-71
O82390	512	Sodium-dependent phosphat	no	no	0.821	0.720	0.393	1e-70
Q3E9A0	517	Probable anion transporte	no	no	0.763	0.663	0.324	1e-45
Q9MZD1	495	Sialin OS=Ovis aries GN=S	N/A	no	0.690	0.626	0.323	7e-41

>sp|Q66GI9|ANTR4_ARATH Probable anion transporter 4, chloroplastic OS=Arabidopsis thaliana GN=ANTR4 PE=2 SV=1

 Score =  584 bits (1506), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 305/423 (72%), Positives = 351/423 (82%), Gaps = 10/423 (2%)

Query: 34  FPYKSTNRKLF----RNVSS----NSGSVGLRTIVGCRVRTGVSSNDKSFDLAPNEDEAL 85
            P +   RKL     R V+S     + SV L  I   R+R   S   ++ +    E  A 
Sbjct: 41  LPERDRRRKLVLCTGRVVNSLKFTGNTSVDLCGIPRHRLRVSCSDARRTPEETAAELTA- 99

Query: 86  APNFLEFITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLW 145
            PNF EFITSERVKVV+MLALALALCNADRVVMSVAIVPLSL+ GWS+SFSGIVQSSFLW
Sbjct: 100 QPNFSEFITSERVKVVAMLALALALCNADRVVMSVAIVPLSLSRGWSKSFSGIVQSSFLW 159

Query: 146 GYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGV 205
           GYL+SPIAGGTLVD YGGK++MAWGVALWSLATFLTPWAAD+SL ALLA RA+VG+AEGV
Sbjct: 160 GYLISPIAGGTLVDRYGGKVVMAWGVALWSLATFLTPWAADSSLWALLAARAMVGVAEGV 219

Query: 206 ALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSG 265
           ALP MNNMVARWFP TER+RAV IAM GF  GN +GL+LSPILMSQ GI+GPFVIFGLSG
Sbjct: 220 ALPCMNNMVARWFPPTERSRAVGIAMAGFQLGNVVGLMLSPILMSQGGIYGPFVIFGLSG 279

Query: 266 FLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMP 325
           FLW+LVWLSATSS PDRHPQI+K ELEYI ++K++   M NK    + IPPF RLLSKMP
Sbjct: 280 FLWLLVWLSATSSAPDRHPQITKSELEYI-KQKKQISTMENKRISTSGIPPFGRLLSKMP 338

Query: 326 TWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSD 385
           TW++IVAN+MHSWGFFVILSWMPIYFN VYH++L+QA+WFSAVPWS+MAFTGY+ G  SD
Sbjct: 339 TWAVIVANSMHSWGFFVILSWMPIYFNSVYHVNLKQAAWFSAVPWSMMAFTGYIAGFWSD 398

Query: 386 MLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLV 445
           +LI+RGTS+TLTRKI+QSIGFI PGIALIGLT AK P++ASAWL+LA+G+KSFSH GFL+
Sbjct: 399 LLIRRGTSITLTRKIMQSIGFIGPGIALIGLTTAKQPLVASAWLSLAVGLKSFSHLGFLI 458

Query: 446 NLQ 448
           NLQ
Sbjct: 459 NLQ 461

Inorganic phosphate and probable anion transporter.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8W0H5|PHT43_ORYSJ Probable anion transporter 3, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;3 PE=2 SV=1

 Score =  499 bits (1286), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 251/358 (70%), Positives = 303/358 (84%), Gaps = 1/358 (0%)

Query: 91  EFITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVS 150
           EF+TSERVKV +ML LALALCNADRVVMSVAIVPLS A+GW+ SF+G+VQSSFLWGYLVS
Sbjct: 91  EFVTSERVKVAAMLGLALALCNADRVVMSVAIVPLSQAYGWTPSFAGVVQSSFLWGYLVS 150

Query: 151 PIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAM 210
           PI GG LVDYYGGK +MA+GVALWSLATFL+PWAA  SL   L+ R ++G+AEGVALP+M
Sbjct: 151 PIIGGALVDYYGGKRVMAYGVALWSLATFLSPWAAARSLWLFLSTRVLLGMAEGVALPSM 210

Query: 211 NNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVL 270
           NNMV RWFP+TER+ AV IAM GF  GN IGL+LSPI+MS+AGIFGPFVIFGL GFLWVL
Sbjct: 211 NNMVLRWFPRTERSSAVGIAMAGFQLGNTIGLLLSPIIMSRAGIFGPFVIFGLFGFLWVL 270

Query: 271 VWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSII 330
           VW+SA S TP  + QIS +EL+YI R  QK +   +  +    +PPF +LLSK PTW++I
Sbjct: 271 VWISAISGTPGENAQISAHELDYITR-GQKLVKTQSGGERLRKVPPFSKLLSKWPTWALI 329

Query: 331 VANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR 390
            ANAMHSWG+FVILSWMP+YF  +YH++LR+A+WFSA+PW +MA  GY+ G++SD LIQ 
Sbjct: 330 SANAMHSWGYFVILSWMPVYFKTIYHVNLREAAWFSALPWVMMAVLGYVAGVVSDRLIQN 389

Query: 391 GTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQ 448
           GTS+TLTRKI+Q+IGF+ PG+AL+GL AAKSPV+ASAWLT+A+G+KSF HSGFLVNLQ
Sbjct: 390 GTSITLTRKIMQTIGFVGPGVALLGLNAAKSPVIASAWLTIAVGLKSFGHSGFLVNLQ 447

Probable anion transporter.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q7XJR2|ANTR3_ARATH Probable anion transporter 3, chloroplastic OS=Arabidopsis thaliana GN=ANTR3 PE=2 SV=2

 Score =  398 bits (1023), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 218/460 (47%), Positives = 296/460 (64%), Gaps = 40/460 (8%)

Query: 2   SSCSLS-PYRPI--------YVHINNKFIGIKSINLQFSSQFPYKSTNRKLFRNVSSNSG 52
           SSCS S P  PI        +V  + +   I+  NL++SS+   K       RN ++   
Sbjct: 13  SSCSSSFPRNPIVNRKALLGFVFDSARKNQIRCENLRYSSESDGKR------RNAAAKKR 66

Query: 53  SVGLRTIVGCRVRTGVSSNDKSFDLAPNEDEALAPNFLEFITSERVKVVSMLALALALCN 112
           +          V TG   ++     A  E   + P        ER+KVV + A  + LCN
Sbjct: 67  NQSPERCAAEGVLTGGGGSE-----AIAEVRTMMP--------ERIKVVILTACMMCLCN 113

Query: 113 ADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVA 172
           ADRVVMSVA+VPL+   GWS SF G+VQSSFLWGY+ S + GG LVD YGGK ++AWGVA
Sbjct: 114 ADRVVMSVAVVPLADKLGWSSSFLGVVQSSFLWGYIFSSVIGGALVDRYGGKRVLAWGVA 173

Query: 173 LWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMG 232
           LWSLAT LTPWAA  S LALL +RA  GLAEGVA+P+M  +++RWFP  ERA AV I+M 
Sbjct: 174 LWSLATLLTPWAAAHSTLALLCVRAFFGLAEGVAMPSMTTLLSRWFPMDERASAVGISMA 233

Query: 233 GFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELE 292
           GF  GN +GL+L+P+++S  GI GPF++F   G LWV  W S  ++ P   P I++ EL 
Sbjct: 234 GFHMGNVVGLLLTPLMLSSIGISGPFILFASLGLLWVSTWSSGVTNNPQDSPFITRSELR 293

Query: 293 YILREKQKPLLMGNKHKPATVIPP----FRRLLSKMPTWSIIVANAMHSWGFFVILSWMP 348
            I  +  KP+      +P+T+ P      R LLSK+PTW+II AN  ++WG+FV+LSWMP
Sbjct: 294 LI--QAGKPV------QPSTISPKPNPSLRLLLSKLPTWAIIFANVTNNWGYFVLLSWMP 345

Query: 349 IYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIA 408
           +YF  V++++L+QA+WFSA+PW+ MA +GY  G  SD LI+ G SVT  RKI+QSIGF+ 
Sbjct: 346 VYFQTVFNVNLKQAAWFSALPWATMAISGYYAGAASDFLIRTGHSVTSVRKIMQSIGFMG 405

Query: 409 PGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQ 448
           PG++L+ L  AKSP  A+ ++T+A+ + SFS +GFL+N+Q
Sbjct: 406 PGLSLLCLNFAKSPSCAAVFMTIALSLSSFSQAGFLLNMQ 445

Inorganic phosphate and probable anion transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q53WP9|PHT42_ORYSJ Probable anion transporter 2, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;2 PE=2 SV=1

 Score =  369 bits (946), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 187/353 (52%), Positives = 249/353 (70%), Gaps = 6/353 (1%)

Query: 96  ERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGG 155
           ER KVV+++A  + LCNADRVVMSVA+VP +  +GWS SF GIVQSSFLWGY+ S + GG
Sbjct: 121 ERAKVVALVAAVMLLCNADRVVMSVAVVPFAAQYGWSSSFLGIVQSSFLWGYVFSSMVGG 180

Query: 156 TLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVA 215
            L D YGGK +MA   ALWSLATFLTPWAA  S + LLA+RA+ GLAEGVA P M+  + 
Sbjct: 181 ALADRYGGKKVMAGAAALWSLATFLTPWAASQSTIMLLAIRALFGLAEGVAFPTMSTFLP 240

Query: 216 RWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSA 275
           +WFP  ERA AV I+MGGF  GN I  + +PI+MS  G+ G F  F   G+LW+ VWL  
Sbjct: 241 KWFPTHERATAVGISMGGFHLGNVISFLATPIIMSHIGLAGTFAFFASLGYLWLSVWLFN 300

Query: 276 TSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAM 335
             S P     ISK EL+ IL  +    + G+K       P  R +LSK+  W+IIVAN +
Sbjct: 301 VESDPLDSRTISKSELQLILAGRSASKIQGSK------FPSLREILSKIEMWAIIVANVV 354

Query: 336 HSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVT 395
           ++WG+FV+LSWMP+YF  VY+++L+QA+WFSA+PW+VMA +GY+ G  +D LI+ G SV 
Sbjct: 355 NNWGYFVLLSWMPVYFKTVYNVNLKQAAWFSAIPWAVMALSGYVAGASADFLIKSGFSVA 414

Query: 396 LTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQ 448
           L RKI+QSIGFI PG++L+ L  A++P +A+  +T+A+ + SFS +G+  N+Q
Sbjct: 415 LVRKIMQSIGFIGPGVSLLCLRFAQTPSVAAVLMTIALSLSSFSQAGYFCNVQ 467

Probable anion transporter.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q652N5|PHT44_ORYSJ Probable anion transporter 4, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;4 PE=2 SV=1

 Score =  284 bits (727), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 148/368 (40%), Positives = 222/368 (60%), Gaps = 10/368 (2%)

Query: 81  EDEALAPNFLEFITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQ 140
           +   ++P + +F   +R  VV +   +  LCN DRV MS+AI+P+S   GWS +  G++Q
Sbjct: 167 DTNEISPWWQQF--PKRWTVVLLCFFSFLLCNMDRVNMSIAILPMSSEFGWSPATVGLIQ 224

Query: 141 SSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVG 200
           SSF WGYL++ I GG   D +GGK+++ +GV  WS+AT LTP AA   L  LL MRA +G
Sbjct: 225 SSFFWGYLLTQILGGIWADRFGGKVVLGFGVVWWSIATVLTPLAAKIGLPFLLVMRAFMG 284

Query: 201 LAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVI 260
           + EGVA+PAMNN++++W P +ER+R++A+   G   G+  GL  SP+L+S+ G    F  
Sbjct: 285 IGEGVAMPAMNNILSKWVPVSERSRSLALVYSGMYLGSVTGLAFSPLLISRFGWPSVFYA 344

Query: 261 FGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRL 320
           FG  G +W  +W     S+P   P++SK E  YIL         G+  K      P++ +
Sbjct: 345 FGSLGSVWFALWQRKAHSSPSEDPELSKAEKRYILG--------GSTLKEPVTSIPWKLI 396

Query: 321 LSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLG 380
           LSK P W++IV++  H+WG F++L+WMP Y+N V   +L ++     +PW  MA    +G
Sbjct: 397 LSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLLCVLPWLTMAIFANIG 456

Query: 381 GLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSH 440
           G ++D L+ RG S+T  RKI+QSIGF+ P + L  L+  ++P MA   +  + G  +FS 
Sbjct: 457 GWIADTLVGRGVSITNVRKIMQSIGFLGPALFLTLLSKVRTPAMAVLCMACSQGSDAFSQ 516

Query: 441 SGFLVNLQ 448
           SG   N Q
Sbjct: 517 SGLYSNHQ 524

Probable anion transporter.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8GX78|ANTR2_ARATH Probable anion transporter 2, chloroplastic OS=Arabidopsis thaliana GN=ANTR2 PE=2 SV=1

 Score =  280 bits (717), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 142/353 (40%), Positives = 217/353 (61%), Gaps = 8/353 (2%)

Query: 96  ERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGG 155
            R  +V +   +  LCN DRV MS+AI+P+S  + WS +  G++QSSF WGYL++ I GG
Sbjct: 130 RRWVIVLLCFSSFLLCNMDRVNMSIAILPMSQEYNWSSATVGLIQSSFFWGYLLTQILGG 189

Query: 156 TLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVA 215
              D +GGK+++ +GV  WS AT +TP AA   L  LL +RA +G+ EGVA+PAMNNM++
Sbjct: 190 IWADKFGGKVVLGFGVVWWSFATIMTPIAARLGLPFLLVVRAFMGIGEGVAMPAMNNMLS 249

Query: 216 RWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSA 275
           +W P +ER+R++A+   G   G+  GL  SP+L+++ G    F  FG  G +W L+WL  
Sbjct: 250 KWIPVSERSRSLALVYSGMYLGSVTGLAFSPMLITKFGWPSVFYSFGSLGSIWFLLWLKF 309

Query: 276 TSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAM 335
             S+P   P +S+        E++K +L G+K +    + P++ +LSK P W++I+++  
Sbjct: 310 AYSSPKDDPDLSE--------EEKKVILGGSKPREPVTVIPWKLILSKPPVWALIISHFC 361

Query: 336 HSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVT 395
           H+WG F++L+WMP Y+N V   +L ++     +PW  MA    +GG ++D L+ RG S+T
Sbjct: 362 HNWGTFILLTWMPTYYNQVLKFNLTESGLLCVLPWLTMAVFANIGGWIADTLVSRGLSIT 421

Query: 396 LTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQ 448
             RKI+QSIGF+ P   L  L+  K+P MA   +  + G  +FS SG   N Q
Sbjct: 422 NVRKIMQSIGFLGPAFFLSQLSHVKTPAMAVLCMACSQGSDAFSQSGLYSNHQ 474

Inorganic phosphate and probable anion transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SDI4|PHT41_ORYSJ Probable anion transporter 1, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;1 PE=2 SV=1

 Score =  269 bits (687), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 146/353 (41%), Positives = 206/353 (58%), Gaps = 8/353 (2%)

Query: 96  ERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGG 155
           +R  +V +   A  LCN DRV MS+AI+P+S   GW+    G++QSSF WGYL++ IAGG
Sbjct: 118 KRWAIVFLCFSAFLLCNMDRVNMSIAILPMSAEFGWNPQTVGLIQSSFFWGYLLTQIAGG 177

Query: 156 TLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVA 215
              D  GGK ++ +GV  WS+AT LTP+AA   L  LL  RA +G+ EGVA+PAMNN+++
Sbjct: 178 IWADTVGGKTVLGFGVIWWSIATALTPFAAKLGLPFLLVTRAFMGVGEGVAMPAMNNILS 237

Query: 216 RWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSA 275
           +W P +ER+R++A+   G   G+  GL  SP+L+   G    F  FG  G  W   W S 
Sbjct: 238 KWVPVSERSRSLALVYSGMYLGSVTGLAFSPLLIHNFGWPSVFYSFGSLGVFWFSTWASK 297

Query: 276 TSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAM 335
             S+P   P IS  E + I  +           +P   I P+  +LSK P W++IV++  
Sbjct: 298 AYSSPLEDPGISAEEKKLITSQT-------TGGEPVKEI-PWGLILSKPPVWALIVSHFC 349

Query: 336 HSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVT 395
           H+WG F++L+WMP Y+N V   +L ++  F  +PW  MA +   GG ++D L+ RG SVT
Sbjct: 350 HNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVSANFGGWIADTLVSRGLSVT 409

Query: 396 LTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQ 448
             RKI+QSIGF+ P   L  L+   SP MA   +  + G  +FS SG   N Q
Sbjct: 410 TVRKIMQSIGFLGPAFFLTQLSHIDSPAMAVLCMACSQGTDAFSQSGLYSNHQ 462

Probable anion transporter.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O82390|ANTR1_ARATH Sodium-dependent phosphate transport protein 1, chloroplastic OS=Arabidopsis thaliana GN=ANTR1 PE=1 SV=1

 Score =  267 bits (683), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 150/381 (39%), Positives = 219/381 (57%), Gaps = 12/381 (3%)

Query: 68  VSSNDKSFDLAPNEDEALAPNFLEFITSERVKVVSMLALALALCNADRVVMSVAIVPLSL 127
           VS N+     +P+    + P + EF   +R  +V +   A  LCN DRV MS+AI+P+S 
Sbjct: 77  VSGNNDVVSDSPSS--IVLPWWEEF--PKRWVIVLLCFSAFLLCNMDRVNMSIAILPMSA 132

Query: 128 AHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADT 187
            +GW+ +  G++QSSF WGYL++ IAGG   D  GGK ++ +GV  WS+AT LTP AA  
Sbjct: 133 EYGWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKRVLGFGVIWWSIATILTPVAAKL 192

Query: 188 SLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPI 247
            L  LL +RA +G+ EGVA+PAMNN++++W P  ER+R++A+   G   G+  GL  SP 
Sbjct: 193 GLPYLLVVRAFMGVGEGVAMPAMNNILSKWVPVQERSRSLALVYSGMYLGSVTGLAFSPF 252

Query: 248 LMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNK 307
           L+ Q G    F  FG  G +W+ +WL+   S+P   P         +L E++K +     
Sbjct: 253 LIHQFGWPSVFYSFGSLGTVWLTLWLTKAESSPLEDPT--------LLPEERKLIADNCA 304

Query: 308 HKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSA 367
            K      P+R +LSK P W++I  +  H+WG F++L+WMP Y++ V   +L ++   S 
Sbjct: 305 SKEPVKSIPWRLILSKPPVWALISCHFCHNWGTFILLTWMPTYYHQVLKFNLMESGLLSV 364

Query: 368 VPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASA 427
            PW  MA +   GG ++D L+ RG SVT  RKI+Q+IGF+ P   L  L    SP MA  
Sbjct: 365 FPWMTMAISANAGGWIADTLVSRGFSVTNVRKIMQTIGFLGPAFFLTQLKHIDSPTMAVL 424

Query: 428 WLTLAIGMKSFSHSGFLVNLQ 448
            +  + G  +FS SG   N Q
Sbjct: 425 CMACSQGTDAFSQSGLYSNHQ 445

Specific for inorganic phosphate transport across the thylakoid membrane in a sodium dependent manner. Binds glutamate but cannot transport it.

Arabidopsis thaliana (taxid: 3702)

>sp|Q3E9A0|ANTR6_ARATH Probable anion transporter 6, chloroplastic OS=Arabidopsis thaliana GN=ANTR6 PE=2 SV=1

 Score =  184 bits (467), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 116/357 (32%), Positives = 183/357 (51%), Gaps = 14/357 (3%)

Query: 96  ERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGG 155
           +R K++   +LA  +CN D+V +S+AI+P+S   GWS S +G+VQSSF WGY +S + GG
Sbjct: 97  QRYKLIGATSLAFVICNMDKVNLSIAIIPMSHQFGWSSSVAGLVQSSFFWGYALSQLPGG 156

Query: 156 TLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVA 215
            L   +GG+ ++  GV  WS AT L P  A   +  L+  R +VG+ EGV+  A  +++A
Sbjct: 157 WLSKIFGGRKVLEIGVFTWSFATALVPLLAGF-MPGLIFSRILVGIGEGVSPSAATDLIA 215

Query: 216 RWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVL--VWL 273
           R  P  ER+RAV    GG + G+ +GL+L+P ++        F +FGL G  W +   +L
Sbjct: 216 RTIPVKERSRAVGFVFGGLSLGSVMGLLLAPPIIETFNWESVFYLFGLLGVGWFVGFQFL 275

Query: 274 SATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVAN 333
           +    +   +   + ++ E   +E+     +G+  K      P++        W++I  +
Sbjct: 276 NEEEVSYKGNEISTSHKSENATKEE-----LGSSLKEI----PWKSFFQSPAVWAMIYTH 326

Query: 334 AMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTS 393
              SWG +  LSW+P YF+    ++L +A+W S +P         L    +D LI  G  
Sbjct: 327 FCGSWGHYTCLSWLPTYFSEALSLNLTEAAWVSILPPLASIVVTSLASQFADYLITNGVD 386

Query: 394 VTLTRKILQSIGFIAPGIA--LIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQ 448
            T  RKI Q+I F+AP I   L  +     P      LT  + + SF+ SG     Q
Sbjct: 387 TTTVRKICQTIAFVAPAICMTLSSVDIGLPPWEIVGILTAGLALSSFALSGLYCTHQ 443

Inorganic phosphate and probable anion transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9MZD1|S17A5_SHEEP Sialin OS=Ovis aries GN=SLC17A5 PE=2 SV=1

 Score =  168 bits (426), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 104/321 (32%), Positives = 168/321 (52%), Gaps = 11/321 (3%)

Query: 129 HGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTS 188
           + W     G +  SF +GY+++ I GG +    GGK+++ +G+   ++ T  TP AAD  
Sbjct: 101 YRWDAETQGWILGSFFYGYIITQIPGGYVASRSGGKLLLGFGIFATAIFTLFTPLAADFG 160

Query: 189 LLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPIL 248
           + AL+A+RA+ GL EGV  PAM+ M + W P  ER++ ++I+  G   G  + L LS ++
Sbjct: 161 VGALVALRALEGLGEGVTYPAMHAMWSSWAPPLERSKLLSISYAGAQLGTVVSLPLSGVI 220

Query: 249 MSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKH 308
                    F  FG+ G +W ++W+   S TP+ H  I+ YE EYIL   +  L   +  
Sbjct: 221 CYYMNWTYVFYFFGIVGIIWFILWICLVSDTPETHKTITPYEKEYILSSLKNQL---SSQ 277

Query: 309 KPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAV 368
           K    IP    +L  +P W+I+VA+  ++W F+ +L+ +P Y   V   ++++  + SAV
Sbjct: 278 KSVPWIP----MLKSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEVLRFNIQENGFLSAV 333

Query: 369 PWSVMAFTGYLGGLLSDMLIQRGTSVTL-TRKILQSIGFIAPGIALI--GLTAAKSPVMA 425
           P+        L G  +D L  R    TL  R++   IG I P I L+  G        +A
Sbjct: 334 PYLGCWLCMILSGQAADNLRARWNFSTLWVRRVFSLIGMIGPAIFLVAAGFIGCDYS-LA 392

Query: 426 SAWLTLAIGMKSFSHSGFLVN 446
            A+LT++  +  F  SGF +N
Sbjct: 393 VAFLTISTTLGGFCSSGFSIN 413

Primary solute translocator for anionic substances; particularly it is a free sialic acid transporter in the lysosomes (Probable). Receptor for CM101, a polysaccharide produced by group B Streptococcus with antipathoangiogenic properties.

Ovis aries (taxid: 9940)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	449
224054570	550	predicted protein [Populus trichocarpa]	0.881	0.72	0.788	1e-175
225434688	525	PREDICTED: probable anion transporter 4,	0.919	0.786	0.734	1e-168
449470650	530	PREDICTED: probable anion transporter 4,	0.897	0.760	0.754	1e-167
449455040	530	PREDICTED: probable anion transporter 4,	0.897	0.760	0.752	1e-166
297819304	533	hypothetical protein ARALYDRAFT_485075 [	0.991	0.834	0.679	1e-165
42572593	469	putative anion transporter 4 [Arabidopsi	0.922	0.882	0.721	1e-164
17064732	533	putative protein [Arabidopsis thaliana]	0.919	0.774	0.721	1e-164
79314547	534	putative anion transporter 4 [Arabidopsi	0.919	0.773	0.721	1e-164
22331630	533	putative anion transporter 4 [Arabidopsi	0.919	0.774	0.721	1e-164
356553048	515	PREDICTED: probable anion transporter 4,	0.899	0.784	0.731	1e-163

>gi|224054570|ref|XP_002298326.1| predicted protein [Populus trichocarpa] gi|222845584|gb|EEE83131.1| predicted protein [Populus trichocarpa]

 Score =  620 bits (1600), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 314/398 (78%), Positives = 345/398 (86%), Gaps = 2/398 (0%)

Query: 51  SGSVGLRTIVGCRVRTGVSSNDKSFDLAPNEDEALAPNFLEFITSERVKVVSMLALALAL 110
           +GSV  RT+   RVR  VSSND  F     + E  AP+F EFITSER+KVVSMLALALAL
Sbjct: 60  NGSVEFRTVPSLRVR--VSSNDAQFGSLNEDCEPKAPSFREFITSERIKVVSMLALALAL 117

Query: 111 CNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWG 170
           CNADRVVMSVAIVPLSLAHGWSRSFSG+VQSSFLWGYL+SPIAGGTLVDYYGGK++M WG
Sbjct: 118 CNADRVVMSVAIVPLSLAHGWSRSFSGVVQSSFLWGYLISPIAGGTLVDYYGGKVVMGWG 177

Query: 171 VALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIA 230
           VALWSLATFLTPWAADTSL ALLA RA++G+AEGVALP MNNM+ARWFPQTERARAV IA
Sbjct: 178 VALWSLATFLTPWAADTSLWALLATRAMLGIAEGVALPCMNNMIARWFPQTERARAVGIA 237

Query: 231 MGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYE 290
           M GF  GNAIGL+LSPILMS+ GIFGPFVIFGLSGFLWVLVWLSA SSTPDR  QISKYE
Sbjct: 238 MAGFQFGNAIGLMLSPILMSKGGIFGPFVIFGLSGFLWVLVWLSAISSTPDRSSQISKYE 297

Query: 291 LEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIY 350
           LEYIL +  K   M NK K   +IPPFRRLLSKMPTWS+I+ANAMHSWGFFVILSWMPIY
Sbjct: 298 LEYILNKGWKSFPMENKPKTNRIIPPFRRLLSKMPTWSLIIANAMHSWGFFVILSWMPIY 357

Query: 351 FNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPG 410
           FN +YH+DL+QA+WFSAVPWSVM F GY GG  SDMLI+ G SVTLTRKI+QSIGF  PG
Sbjct: 358 FNTIYHVDLKQAAWFSAVPWSVMGFMGYFGGTWSDMLIRSGISVTLTRKIMQSIGFFGPG 417

Query: 411 IALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQ 448
           IALIGLT A++P +ASAWLT+A+G+KSFSHSGFLVNLQ
Sbjct: 418 IALIGLTTARNPFLASAWLTIAVGLKSFSHSGFLVNLQ 455

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434688|ref|XP_002279865.1| PREDICTED: probable anion transporter 4, chloroplastic [Vitis vinifera]

 Score =  596 bits (1537), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 312/425 (73%), Positives = 354/425 (83%), Gaps = 12/425 (2%)

Query: 34  FPYK---STNRKLFRNVSSNSGSVGLR-----TIVGCRVRTGVSSNDKSFDLAP--NEDE 83
           FP++   ST +  FR VSS + S+ LR        G R R      D SF       E E
Sbjct: 34  FPFRLIESTKQNSFRIVSSAT-SLRLRLRYDSVERGLRARVSSDGGD-SFTGGELQEEKE 91

Query: 84  ALAPNFLEFITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSF 143
             AP+F+EFITSERVKVV+MLALALALCNADRVVMSVAIVPLSL+HGWSRSF G+VQSSF
Sbjct: 92  LQAPSFVEFITSERVKVVAMLALALALCNADRVVMSVAIVPLSLSHGWSRSFGGVVQSSF 151

Query: 144 LWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAE 203
           LWGYL+SPIAGG LVDYYGGK++MAWGVALWSLATFLTPWAA+TS+ ALL MRA++G+AE
Sbjct: 152 LWGYLISPIAGGALVDYYGGKVVMAWGVALWSLATFLTPWAAETSIWALLTMRALLGVAE 211

Query: 204 GVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGL 263
           GVALP MNNMVARWFPQTER+RAV IAM GF  G+AIGL L+PILMSQ GIFGPFVIFGL
Sbjct: 212 GVALPCMNNMVARWFPQTERSRAVGIAMAGFQLGSAIGLTLAPILMSQGGIFGPFVIFGL 271

Query: 264 SGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSK 323
           SGFLWVLVW+SATSSTPD++PQISK EL+YIL   +K   + N+ K   VIPPFRRLLSK
Sbjct: 272 SGFLWVLVWISATSSTPDQNPQISKSELDYILNNGRKSFRVENQAKRTKVIPPFRRLLSK 331

Query: 324 MPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLL 383
            PTWS+IVANAMHSWGFFVILSWMPIYFN ++ +DL QA+WFSAVPWS+MA  GY GG  
Sbjct: 332 PPTWSLIVANAMHSWGFFVILSWMPIYFNTIHRVDLTQAAWFSAVPWSMMAIVGYFGGAW 391

Query: 384 SDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGF 443
           SD+LIQRG SVT+TRKI+QSIGF+ PGIALIGLTAAKSP++ASAWLTLA+G+KSFSHSGF
Sbjct: 392 SDILIQRGLSVTMTRKIMQSIGFVGPGIALIGLTAAKSPLIASAWLTLAVGLKSFSHSGF 451

Query: 444 LVNLQ 448
           LVNLQ
Sbjct: 452 LVNLQ 456

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449470650|ref|XP_004153029.1| PREDICTED: probable anion transporter 4, chloroplastic-like [Cucumis sativus] gi|449474939|ref|XP_004154326.1| PREDICTED: probable anion transporter 4, chloroplastic-like [Cucumis sativus] gi|449510734|ref|XP_004163745.1| PREDICTED: probable anion transporter 4, chloroplastic-like [Cucumis sativus]

 Score =  595 bits (1533), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 314/416 (75%), Positives = 353/416 (84%), Gaps = 13/416 (3%)

Query: 45  RNVSSNSGSVGLRTIVGCR------------VRTGVSSNDKSFDLAPNEDEALAPNFLEF 92
           RN + +  S G   + G R             R GVSSND  F     + +  +P+F EF
Sbjct: 44  RNCTGSLSSAGYFPVFGLRNGSSSDSGFVLPSRIGVSSNDAQFGSFAEDKDMESPSFFEF 103

Query: 93  ITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPI 152
           ITSERVKVV+MLALALALCNADRVVMSVAIVPLSL++GWSRSF+GIVQSSFLWGY VSPI
Sbjct: 104 ITSERVKVVAMLALALALCNADRVVMSVAIVPLSLSNGWSRSFAGIVQSSFLWGYFVSPI 163

Query: 153 AGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNN 212
           AGG LVDYYGGK++M WGVALWSLATFLTPWAA+TSL ALLAMRA++G+AEGVALP MNN
Sbjct: 164 AGGALVDYYGGKMVMGWGVALWSLATFLTPWAAETSLWALLAMRALLGIAEGVALPCMNN 223

Query: 213 MVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVW 272
           MVARWFP TERARAV IAM GF  G+AIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVW
Sbjct: 224 MVARWFPPTERARAVGIAMAGFQLGSAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVW 283

Query: 273 LSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVA 332
           LSA SSTPDR+ QISKYELEY+L ++Q+P ++ N  K  TVIPPF+RLLSKMPTWS+I+A
Sbjct: 284 LSAISSTPDRNLQISKYELEYVLSKRQQPSVVENVPK-KTVIPPFKRLLSKMPTWSLIIA 342

Query: 333 NAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGT 392
           NAMHSWGFFVILSWMPIYFN VYH+DLRQA+WFSAVPW+VMA  GY+GGL SD LI+ GT
Sbjct: 343 NAMHSWGFFVILSWMPIYFNSVYHVDLRQAAWFSAVPWAVMALMGYVGGLWSDGLIKSGT 402

Query: 393 SVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQ 448
           SVTLTRKI+QSIGFI PGIALIGLT+A+S  +ASAWLTLA+G+KSFSHSGFLVNLQ
Sbjct: 403 SVTLTRKIMQSIGFIGPGIALIGLTSARSASLASAWLTLAVGLKSFSHSGFLVNLQ 458

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455040|ref|XP_004145261.1| PREDICTED: probable anion transporter 4, chloroplastic-like [Cucumis sativus]

 Score =  590 bits (1522), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 313/416 (75%), Positives = 352/416 (84%), Gaps = 13/416 (3%)

Query: 45  RNVSSNSGSVGLRTIVGCR------------VRTGVSSNDKSFDLAPNEDEALAPNFLEF 92
           RN + +  S G   + G R             R GVSSND  F     + +  +P+F EF
Sbjct: 44  RNCTGSLSSAGYFPVFGLRNGSSSDSGFVLPSRIGVSSNDAQFGSFAEDKDMESPSFFEF 103

Query: 93  ITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPI 152
           ITSERVKVV+MLALALALCNADRVVMSVAIVPLSL++GWSRSF+GIVQSSFLWGY VSPI
Sbjct: 104 ITSERVKVVAMLALALALCNADRVVMSVAIVPLSLSNGWSRSFAGIVQSSFLWGYFVSPI 163

Query: 153 AGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNN 212
           AGG LVDYYGGK++M WGVALWSLATFLTPWAA+TSL ALLAMRA++G+AEGVALP MNN
Sbjct: 164 AGGALVDYYGGKMVMGWGVALWSLATFLTPWAAETSLWALLAMRALLGIAEGVALPCMNN 223

Query: 213 MVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVW 272
           MVARWFP TERARAV IAM GF  G+AIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVW
Sbjct: 224 MVARWFPPTERARAVGIAMAGFQLGSAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVW 283

Query: 273 LSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVA 332
           LSA SSTPDR+ QISKYELEY+L ++Q+P ++ N  K  TVIPPF+RLLSKMPTWS+I+A
Sbjct: 284 LSAISSTPDRNLQISKYELEYVLSKRQQPSVVENVPK-KTVIPPFKRLLSKMPTWSLIIA 342

Query: 333 NAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGT 392
           NAMHSWGFFVILSWMPIYFN VYH+DLRQA+WFSAVPW+VMA  GY+GGL SD LI+ GT
Sbjct: 343 NAMHSWGFFVILSWMPIYFNSVYHVDLRQAAWFSAVPWAVMALMGYVGGLWSDGLIKSGT 402

Query: 393 SVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQ 448
           SVTLTRKI+QSIGFI PGIALIGLT+A+S  +ASAWLTLA+ +KSFSHSGFLVNLQ
Sbjct: 403 SVTLTRKIMQSIGFIGPGIALIGLTSARSASLASAWLTLAVWLKSFSHSGFLVNLQ 458

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297819304|ref|XP_002877535.1| hypothetical protein ARALYDRAFT_485075 [Arabidopsis lyrata subsp. lyrata] gi|297323373|gb|EFH53794.1| hypothetical protein ARALYDRAFT_485075 [Arabidopsis lyrata subsp. lyrata]

 Score =  588 bits (1515), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 309/455 (67%), Positives = 359/455 (78%), Gaps = 10/455 (2%)

Query: 2   SSCSLSPYRPIYVHINNKFIGIKSINLQFSSQFPYKSTNRKLF----RNVSS----NSGS 53
           SS        + +H +   +      L+     P +   RKL     R+V S     + +
Sbjct: 9   SSIDFRNRSSLKIHGDRAILDSNLPTLRRIPSLPERDRRRKLLLCSGRSVGSLRFTGNTA 68

Query: 54  VGLRTIVGCRVRTGVSSNDKSFDLAPNEDEALAPNFLEFITSERVKVVSMLALALALCNA 113
           V L  I   R+R   S   +S +    E  A  PNF EFITSERVKVV+MLALALALCNA
Sbjct: 69  VHLCGIPRHRLRVSCSDARRSPEETAAEMTA-QPNFSEFITSERVKVVAMLALALALCNA 127

Query: 114 DRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVAL 173
           DRVVMSVAIVPLSL+ GWS+SFSGIVQSSFLWGYL+SPIAGGTLVD YGGK++MAWGVAL
Sbjct: 128 DRVVMSVAIVPLSLSRGWSKSFSGIVQSSFLWGYLISPIAGGTLVDRYGGKVVMAWGVAL 187

Query: 174 WSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGG 233
           WSLATFLTPWAAD+SL ALLA RA+VG+AEGVALP MNNMVARWFP TER+RAV IAM G
Sbjct: 188 WSLATFLTPWAADSSLWALLAARAMVGVAEGVALPCMNNMVARWFPSTERSRAVGIAMAG 247

Query: 234 FTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEY 293
           F  GN +GL+LSPILMSQ GI+GPFVIFGLSGFLW+LVWLSATSS PDRHPQI+K ELEY
Sbjct: 248 FQLGNVVGLMLSPILMSQGGIYGPFVIFGLSGFLWLLVWLSATSSAPDRHPQITKSELEY 307

Query: 294 ILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNF 353
           I ++KQ+P    NK      IPPF RLLSKMPTW++IVAN+MHSWGFFVILSWMPIYFN 
Sbjct: 308 I-KQKQQPSTGENKRNTTGGIPPFGRLLSKMPTWAVIVANSMHSWGFFVILSWMPIYFNS 366

Query: 354 VYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIAL 413
           VYH++L+QA+WFSAVPWS+MAFTGY+ G  SD+LI+RGTS+TLTRKI+QSIGFI PGI+L
Sbjct: 367 VYHVNLKQAAWFSAVPWSMMAFTGYIAGFWSDLLIRRGTSITLTRKIMQSIGFIGPGISL 426

Query: 414 IGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQ 448
           IGLT AK P++ASAWL+LA+G+KSFSH GFL+NLQ
Sbjct: 427 IGLTTAKQPLVASAWLSLAVGLKSFSHLGFLINLQ 461

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42572593|ref|NP_974392.1| putative anion transporter 4 [Arabidopsis thaliana] gi|332644706|gb|AEE78227.1| putative anion transporter 4 [Arabidopsis thaliana]

 Score =  585 bits (1508), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 306/424 (72%), Positives = 352/424 (83%), Gaps = 10/424 (2%)

Query: 34  FPYKSTNRKLF----RNVSS----NSGSVGLRTIVGCRVRTGVSSNDKSFDLAPNEDEAL 85
            P +   RKL     R V+S     + SV L  I   R+R   S   ++ +    E  A 
Sbjct: 41  LPERDRRRKLVLCTGRVVNSLKFTGNTSVDLCGIPRHRLRVSCSDARRTPEETAAELTA- 99

Query: 86  APNFLEFITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLW 145
            PNF EFITSERVKVV+MLALALALCNADRVVMSVAIVPLSL+ GWS+SFSGIVQSSFLW
Sbjct: 100 QPNFSEFITSERVKVVAMLALALALCNADRVVMSVAIVPLSLSRGWSKSFSGIVQSSFLW 159

Query: 146 GYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGV 205
           GYL+SPIAGGTLVD YGGK++MAWGVALWSLATFLTPWAAD+SL ALLA RA+VG+AEGV
Sbjct: 160 GYLISPIAGGTLVDRYGGKVVMAWGVALWSLATFLTPWAADSSLWALLAARAMVGVAEGV 219

Query: 206 ALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSG 265
           ALP MNNMVARWFP TER+RAV IAM GF  GN +GL+LSPILMSQ GI+GPFVIFGLSG
Sbjct: 220 ALPCMNNMVARWFPPTERSRAVGIAMAGFQLGNVVGLMLSPILMSQGGIYGPFVIFGLSG 279

Query: 266 FLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMP 325
           FLW+LVWLSATSS PDRHPQI+K ELEYI ++K++   M NK    + IPPF RLLSKMP
Sbjct: 280 FLWLLVWLSATSSAPDRHPQITKSELEYI-KQKKQISTMENKRISTSGIPPFGRLLSKMP 338

Query: 326 TWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSD 385
           TW++IVAN+MHSWGFFVILSWMPIYFN VYH++L+QA+WFSAVPWS+MAFTGY+ G  SD
Sbjct: 339 TWAVIVANSMHSWGFFVILSWMPIYFNSVYHVNLKQAAWFSAVPWSMMAFTGYIAGFWSD 398

Query: 386 MLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLV 445
           +LI+RGTS+TLTRKI+QSIGFI PGIALIGLT AK P++ASAWL+LA+G+KSFSH GFL+
Sbjct: 399 LLIRRGTSITLTRKIMQSIGFIGPGIALIGLTTAKQPLVASAWLSLAVGLKSFSHLGFLI 458

Query: 446 NLQV 449
           NLQV
Sbjct: 459 NLQV 462

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|17064732|gb|AAL32520.1| putative protein [Arabidopsis thaliana]

 Score =  585 bits (1508), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 305/423 (72%), Positives = 351/423 (82%), Gaps = 10/423 (2%)

Query: 34  FPYKSTNRKLF----RNVSS----NSGSVGLRTIVGCRVRTGVSSNDKSFDLAPNEDEAL 85
            P +   RKL     R V+S     + SV L  I   R+R   S   ++ +    E  A 
Sbjct: 41  LPERDRRRKLVLCTGRVVNSLKFTGNTSVDLCGIPRHRLRVSCSDARRTPEETAAELTA- 99

Query: 86  APNFLEFITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLW 145
            PNF EFITSERVKVV+MLALALALCNADRVVMSVAIVPLSL+ GWS+SFSGIVQSSFLW
Sbjct: 100 QPNFSEFITSERVKVVAMLALALALCNADRVVMSVAIVPLSLSRGWSKSFSGIVQSSFLW 159

Query: 146 GYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGV 205
           GYL+SPIAGGTLVD YGGK++MAWGVALWSLATFLTPWAAD+SL ALLA RA+VG+AEGV
Sbjct: 160 GYLISPIAGGTLVDRYGGKVVMAWGVALWSLATFLTPWAADSSLWALLAARAMVGVAEGV 219

Query: 206 ALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSG 265
           ALP MNNMVARWFP TER+RAV IAM GF  GN +GL+LSPILMSQ GI+GPFVIFGLSG
Sbjct: 220 ALPCMNNMVARWFPTTERSRAVGIAMAGFQLGNVVGLMLSPILMSQGGIYGPFVIFGLSG 279

Query: 266 FLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMP 325
           FLW+LVWLSATSS PDRHPQI+K ELEYI ++K++   M NK    + IPPF RLLSKMP
Sbjct: 280 FLWLLVWLSATSSAPDRHPQITKSELEYI-KQKKQISTMENKRISTSGIPPFGRLLSKMP 338

Query: 326 TWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSD 385
           TW++IVAN+MHSWGFFVILSWMPIYFN VYH++L+QA+WFSAVPWS+MAFTGY+ G  SD
Sbjct: 339 TWAVIVANSMHSWGFFVILSWMPIYFNSVYHVNLKQAAWFSAVPWSMMAFTGYIAGFWSD 398

Query: 386 MLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLV 445
           +LI+RGTS+TLTRKI+QSIGFI PGIALIGLT AK P++ASAWL+LA+G+KSFSH GFL+
Sbjct: 399 LLIRRGTSITLTRKIMQSIGFIGPGIALIGLTTAKQPLVASAWLSLAVGLKSFSHLGFLI 458

Query: 446 NLQ 448
           NLQ
Sbjct: 459 NLQ 461

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79314547|ref|NP_001030824.1| putative anion transporter 4 [Arabidopsis thaliana] gi|332644707|gb|AEE78228.1| putative anion transporter 4 [Arabidopsis thaliana]

 Score =  585 bits (1507), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 305/423 (72%), Positives = 351/423 (82%), Gaps = 10/423 (2%)

Query: 34  FPYKSTNRKLF----RNVSS----NSGSVGLRTIVGCRVRTGVSSNDKSFDLAPNEDEAL 85
            P +   RKL     R V+S     + SV L  I   R+R   S   ++ +    E  A 
Sbjct: 41  LPERDRRRKLVLCTGRVVNSLKFTGNTSVDLCGIPRHRLRVSCSDARRTPEETAAELTA- 99

Query: 86  APNFLEFITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLW 145
            PNF EFITSERVKVV+MLALALALCNADRVVMSVAIVPLSL+ GWS+SFSGIVQSSFLW
Sbjct: 100 QPNFSEFITSERVKVVAMLALALALCNADRVVMSVAIVPLSLSRGWSKSFSGIVQSSFLW 159

Query: 146 GYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGV 205
           GYL+SPIAGGTLVD YGGK++MAWGVALWSLATFLTPWAAD+SL ALLA RA+VG+AEGV
Sbjct: 160 GYLISPIAGGTLVDRYGGKVVMAWGVALWSLATFLTPWAADSSLWALLAARAMVGVAEGV 219

Query: 206 ALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSG 265
           ALP MNNMVARWFP TER+RAV IAM GF  GN +GL+LSPILMSQ GI+GPFVIFGLSG
Sbjct: 220 ALPCMNNMVARWFPPTERSRAVGIAMAGFQLGNVVGLMLSPILMSQGGIYGPFVIFGLSG 279

Query: 266 FLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMP 325
           FLW+LVWLSATSS PDRHPQI+K ELEYI ++K++   M NK    + IPPF RLLSKMP
Sbjct: 280 FLWLLVWLSATSSAPDRHPQITKSELEYI-KQKKQISTMENKRISTSGIPPFGRLLSKMP 338

Query: 326 TWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSD 385
           TW++IVAN+MHSWGFFVILSWMPIYFN VYH++L+QA+WFSAVPWS+MAFTGY+ G  SD
Sbjct: 339 TWAVIVANSMHSWGFFVILSWMPIYFNSVYHVNLKQAAWFSAVPWSMMAFTGYIAGFWSD 398

Query: 386 MLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLV 445
           +LI+RGTS+TLTRKI+QSIGFI PGIALIGLT AK P++ASAWL+LA+G+KSFSH GFL+
Sbjct: 399 LLIRRGTSITLTRKIMQSIGFIGPGIALIGLTTAKQPLVASAWLSLAVGLKSFSHLGFLI 458

Query: 446 NLQ 448
           NLQ
Sbjct: 459 NLQ 461

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22331630|ref|NP_190282.2| putative anion transporter 4 [Arabidopsis thaliana] gi|75253404|sp|Q66GI9.1|ANTR4_ARATH RecName: Full=Probable anion transporter 4, chloroplastic; AltName: Full=Phosphate transporter PHT4;3; Flags: Precursor gi|51536596|gb|AAU05536.1| At3g46980 [Arabidopsis thaliana] gi|332644705|gb|AEE78226.1| putative anion transporter 4 [Arabidopsis thaliana]

 Score =  584 bits (1506), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 305/423 (72%), Positives = 351/423 (82%), Gaps = 10/423 (2%)

Query: 34  FPYKSTNRKLF----RNVSS----NSGSVGLRTIVGCRVRTGVSSNDKSFDLAPNEDEAL 85
            P +   RKL     R V+S     + SV L  I   R+R   S   ++ +    E  A 
Sbjct: 41  LPERDRRRKLVLCTGRVVNSLKFTGNTSVDLCGIPRHRLRVSCSDARRTPEETAAELTA- 99

Query: 86  APNFLEFITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLW 145
            PNF EFITSERVKVV+MLALALALCNADRVVMSVAIVPLSL+ GWS+SFSGIVQSSFLW
Sbjct: 100 QPNFSEFITSERVKVVAMLALALALCNADRVVMSVAIVPLSLSRGWSKSFSGIVQSSFLW 159

Query: 146 GYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGV 205
           GYL+SPIAGGTLVD YGGK++MAWGVALWSLATFLTPWAAD+SL ALLA RA+VG+AEGV
Sbjct: 160 GYLISPIAGGTLVDRYGGKVVMAWGVALWSLATFLTPWAADSSLWALLAARAMVGVAEGV 219

Query: 206 ALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSG 265
           ALP MNNMVARWFP TER+RAV IAM GF  GN +GL+LSPILMSQ GI+GPFVIFGLSG
Sbjct: 220 ALPCMNNMVARWFPPTERSRAVGIAMAGFQLGNVVGLMLSPILMSQGGIYGPFVIFGLSG 279

Query: 266 FLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMP 325
           FLW+LVWLSATSS PDRHPQI+K ELEYI ++K++   M NK    + IPPF RLLSKMP
Sbjct: 280 FLWLLVWLSATSSAPDRHPQITKSELEYI-KQKKQISTMENKRISTSGIPPFGRLLSKMP 338

Query: 326 TWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSD 385
           TW++IVAN+MHSWGFFVILSWMPIYFN VYH++L+QA+WFSAVPWS+MAFTGY+ G  SD
Sbjct: 339 TWAVIVANSMHSWGFFVILSWMPIYFNSVYHVNLKQAAWFSAVPWSMMAFTGYIAGFWSD 398

Query: 386 MLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLV 445
           +LI+RGTS+TLTRKI+QSIGFI PGIALIGLT AK P++ASAWL+LA+G+KSFSH GFL+
Sbjct: 399 LLIRRGTSITLTRKIMQSIGFIGPGIALIGLTTAKQPLVASAWLSLAVGLKSFSHLGFLI 458

Query: 446 NLQ 448
           NLQ
Sbjct: 459 NLQ 461

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553048|ref|XP_003544870.1| PREDICTED: probable anion transporter 4, chloroplastic-like [Glycine max]

 Score =  581 bits (1498), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 303/414 (73%), Positives = 343/414 (82%), Gaps = 10/414 (2%)

Query: 37  KSTNRKLFRNVSSNSGSVGLRTIVGCRVRTGVSSNDKSFDLAPNEDEALAPN-FLEFITS 95
           K T  K F N SS S    LR++     R  VSSND  F+  P E +    + F EFITS
Sbjct: 37  KRTEFKFFANGSSAS----LRSLP----RLYVSSNDARFNSGPEESQQQQSSSFAEFITS 88

Query: 96  ERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGG 155
           ERVKVV+MLALALALCNADRVVMSVAIVPLSLA+GWSR+F+GIVQSSFLWGYLVSPIAGG
Sbjct: 89  ERVKVVAMLALALALCNADRVVMSVAIVPLSLANGWSRAFAGIVQSSFLWGYLVSPIAGG 148

Query: 156 TLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVA 215
            LVD+YGGK++MAWGVALWSLATFLTPWA+ TSLLALL +RA++G+AEGVALP+MNNMV 
Sbjct: 149 VLVDHYGGKVVMAWGVALWSLATFLTPWASQTSLLALLTVRALLGVAEGVALPSMNNMVV 208

Query: 216 RWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSA 275
           RWFPQTER+RAV I+M GF  G AIGL LSPILMSQ GIFGPFVIFGLSGFLWVLVWLSA
Sbjct: 209 RWFPQTERSRAVGISMAGFMLGCAIGLTLSPILMSQGGIFGPFVIFGLSGFLWVLVWLSA 268

Query: 276 TSSTPDRHPQISKYELEYILREKQKPLLMGN-KHKPATVIPPFRRLLSKMPTWSIIVANA 334
           TSSTPD+ PQISKYELEYIL  +QK   +   K K   VIPPFRRLLSK+PTWS+I+ANA
Sbjct: 269 TSSTPDQSPQISKYELEYILNRRQKSFSVETAKPKKVKVIPPFRRLLSKLPTWSLIIANA 328

Query: 335 MHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSV 394
           MHSWGFF++LSWMPIYF+ VY +DLR A+WFSAVPW++MA  GY  GL SDM+IQ GTSV
Sbjct: 329 MHSWGFFIVLSWMPIYFSSVYRVDLRHAAWFSAVPWALMAVMGYFAGLWSDMMIQSGTSV 388

Query: 395 TLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQ 448
           TLTRKI+Q IGF+ PG+ LIGL  AK+P + SAWLTLA G+KSFSHSGFLVNLQ
Sbjct: 389 TLTRKIMQCIGFVGPGLCLIGLATAKNPAIGSAWLTLAFGLKSFSHSGFLVNLQ 442

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	449
TAIR|locus:2065615	512	PHT4;2 "AT2G38060" [Arabidopsi	0.799	0.701	0.539	9.5e-105
TAIR|locus:2126066	541	ANTR2 "AT4G00370" [Arabidopsis	0.757	0.628	0.414	6.5e-74
TAIR|locus:2060694	512	PHT4;1 "AT2G29650" [Arabidopsi	0.817	0.716	0.399	1.1e-69
TAIR|locus:2149199	517	PHT4;5 "phosphate transporter	0.750	0.651	0.330	7.7e-48
UNIPROTKB|E1B7R3	495	SLC17A5 "Uncharacterized prote	0.685	0.622	0.332	2.4e-44
UNIPROTKB|F1RQG9	497	SLC17A5 "Uncharacterized prote	0.685	0.619	0.333	2.8e-43
MGI|MGI:1924105	495	Slc17a5 "solute carrier family	0.685	0.622	0.310	2.8e-43
RGD|1311388	495	Slc17a5 "solute carrier family	0.685	0.622	0.313	3.5e-43
UNIPROTKB|Q5ZL94	484	SLC17A5 "Uncharacterized prote	0.690	0.640	0.317	4.5e-43
ZFIN|ZDB-GENE-060929-1158	489	slc17a5 "solute carrier family	0.699	0.642	0.317	5.7e-43

TAIR|locus:2065615 PHT4;2 "AT2G38060" [Arabidopsis thaliana (taxid:3702)]

 Score = 1037 (370.1 bits), Expect = 9.5e-105, P = 9.5e-105
 Identities = 198/367 (53%), Positives = 263/367 (71%)

Query:    83 EALAPNFLEFITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSS 142
             EA+A   +  +  ER+KVV + A  + LCNADRVVMSVA+VPL+   GWS SF G+VQSS
Sbjct:    86 EAIAE--VRTMMPERIKVVILTACMMCLCNADRVVMSVAVVPLADKLGWSSSFLGVVQSS 143

Query:   143 FLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLA 202
             FLWGY+ S + GG LVD YGGK ++AWGVALWSLAT LTPWAA  S LALL +RA  GLA
Sbjct:   144 FLWGYIFSSVIGGALVDRYGGKRVLAWGVALWSLATLLTPWAAAHSTLALLCVRAFFGLA 203

Query:   203 EGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFG 262
             EGVA+P+M  +++RWFP  ERA AV I+M GF  GN +GL+L+P+++S  GI GPF++F 
Sbjct:   204 EGVAMPSMTTLLSRWFPMDERASAVGISMAGFHMGNVVGLLLTPLMLSSIGISGPFILFA 263

Query:   263 LSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGN-KHKPATVIPPFRRLL 321
               G LWV  W S  ++ P   P I++ EL  I  +  KP+       KP    P  R LL
Sbjct:   264 SLGLLWVSTWSSGVTNNPQDSPFITRSELRLI--QAGKPVQPSTISPKPN---PSLRLLL 318

Query:   322 SKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGG 381
             SK+PTW+II AN  ++WG+FV+LSWMP+YF  V++++L+QA+WFSA+PW+ MA +GY  G
Sbjct:   319 SKLPTWAIIFANVTNNWGYFVLLSWMPVYFQTVFNVNLKQAAWFSALPWATMAISGYYAG 378

Query:   382 LLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHS 441
               SD LI+ G SVT  RKI+QSIGF+ PG++L+ L  AKSP  A+ ++T+A+ + SFS +
Sbjct:   379 AASDFLIRTGHSVTSVRKIMQSIGFMGPGLSLLCLNFAKSPSCAAVFMTIALSLSSFSQA 438

Query:   442 GFLVNLQ 448
             GFL+N+Q
Sbjct:   439 GFLLNMQ 445

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0008514 "organic anion transmembrane transporter activity" evidence=ISS

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005315 "inorganic phosphate transmembrane transporter activity" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2126066 ANTR2 "AT4G00370" [Arabidopsis thaliana (taxid:3702)]

 Score = 746 (267.7 bits), Expect = 6.5e-74, P = 6.5e-74
 Identities = 145/350 (41%), Positives = 219/350 (62%)

Query:   100 VVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVD 159
             +V +   +  LCN DRV MS+AI+P+S  + WS +  G++QSSF WGYL++ I GG   D
Sbjct:   134 IVLLCFSSFLLCNMDRVNMSIAILPMSQEYNWSSATVGLIQSSFFWGYLLTQILGGIWAD 193

Query:   160 YYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFP 219
              +GGK+++ +GV  WS AT +TP AA   L  LL +RA +G+ EGVA+PAMNNM+++W P
Sbjct:   194 KFGGKVVLGFGVVWWSFATIMTPIAARLGLPFLLVVRAFMGIGEGVAMPAMNNMLSKWIP 253

Query:   220 QTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSST 279
              +ER+R++A+   G   G+  GL  SP+L+++ G    F  FG  G +W L+WL    S+
Sbjct:   254 VSERSRSLALVYSGMYLGSVTGLAFSPMLITKFGWPSVFYSFGSLGSIWFLLWLKFAYSS 313

Query:   280 PDRHPQISKYELEYILREKQKPLLMGNK-HKPATVIPPFRRLLSKMPTWSIIVANAMHSW 338
             P   P +S+        E++K +L G+K  +P TVIP ++ +LSK P W++I+++  H+W
Sbjct:   314 PKDDPDLSE--------EEKKVILGGSKPREPVTVIP-WKLILSKPPVWALIISHFCHNW 364

Query:   339 GFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTR 398
             G F++L+WMP Y+N V   +L ++     +PW  MA    +GG ++D L+ RG S+T  R
Sbjct:   365 GTFILLTWMPTYYNQVLKFNLTESGLLCVLPWLTMAVFANIGGWIADTLVSRGLSITNVR 424

Query:   399 KILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQ 448
             KI+QSIGF+ P   L  L+  K+P MA   +  + G  +FS SG   N Q
Sbjct:   425 KIMQSIGFLGPAFFLSQLSHVKTPAMAVLCMACSQGSDAFSQSGLYSNHQ 474

GO:0008514 "organic anion transmembrane transporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009706 "chloroplast inner membrane" evidence=IDA

GO:0005315 "inorganic phosphate transmembrane transporter activity" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

TAIR|locus:2060694 PHT4;1 "AT2G29650" [Arabidopsis thaliana (taxid:3702)]

 Score = 706 (253.6 bits), Expect = 1.1e-69, P = 1.1e-69
 Identities = 153/383 (39%), Positives = 223/383 (58%)

Query:    68 VSSNDKSFDLAPNEDEALAPNFLEFITSERVKVVSMLALALALCNADRVVMSVAIVPLSL 127
             VS N+     +P+    + P + EF   +R  +V +   A  LCN DRV MS+AI+P+S 
Sbjct:    77 VSGNNDVVSDSPSS--IVLPWWEEF--PKRWVIVLLCFSAFLLCNMDRVNMSIAILPMSA 132

Query:   128 AHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADT 187
              +GW+ +  G++QSSF WGYL++ IAGG   D  GGK ++ +GV  WS+AT LTP AA  
Sbjct:   133 EYGWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKRVLGFGVIWWSIATILTPVAAKL 192

Query:   188 SLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPI 247
              L  LL +RA +G+ EGVA+PAMNN++++W P  ER+R++A+   G   G+  GL  SP 
Sbjct:   193 GLPYLLVVRAFMGVGEGVAMPAMNNILSKWVPVQERSRSLALVYSGMYLGSVTGLAFSPF 252

Query:   248 LMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGN- 306
             L+ Q G    F  FG  G +W+ +WL+   S+P   P +        L E++K L+  N 
Sbjct:   253 LIHQFGWPSVFYSFGSLGTVWLTLWLTKAESSPLEDPTL--------LPEERK-LIADNC 303

Query:   307 -KHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWF 365
                +P   IP +R +LSK P W++I  +  H+WG F++L+WMP Y++ V   +L ++   
Sbjct:   304 ASKEPVKSIP-WRLILSKPPVWALISCHFCHNWGTFILLTWMPTYYHQVLKFNLMESGLL 362

Query:   366 SAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMA 425
             S  PW  MA +   GG ++D L+ RG SVT  RKI+Q+IGF+ P   L  L    SP MA
Sbjct:   363 SVFPWMTMAISANAGGWIADTLVSRGFSVTNVRKIMQTIGFLGPAFFLTQLKHIDSPTMA 422

Query:   426 SAWLTLAIGMKSFSHSGFLVNLQ 448
                +  + G  +FS SG   N Q
Sbjct:   423 VLCMACSQGTDAFSQSGLYSNHQ 445

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0008514 "organic anion transmembrane transporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009624 "response to nematode" evidence=IEP

GO:0005315 "inorganic phosphate transmembrane transporter activity" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0030504 "inorganic diphosphate transmembrane transporter activity" evidence=IGI

GO:0009416 "response to light stimulus" evidence=IEP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042631 "cellular response to water deprivation" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2149199 PHT4;5 "phosphate transporter 4;5" [Arabidopsis thaliana (taxid:3702)]

 Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
 Identities = 116/351 (33%), Positives = 181/351 (51%)

Query:    96 ERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGG 155
             +R K++   +LA  +CN D+V +S+AI+P+S   GWS S +G+VQSSF WGY +S + GG
Sbjct:    97 QRYKLIGATSLAFVICNMDKVNLSIAIIPMSHQFGWSSSVAGLVQSSFFWGYALSQLPGG 156

Query:   156 TLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVA 215
              L   +GG+ ++  GV  WS AT L P  A   +  L+  R +VG+ EGV+  A  +++A
Sbjct:   157 WLSKIFGGRKVLEIGVFTWSFATALVPLLAGF-MPGLIFSRILVGIGEGVSPSAATDLIA 215

Query:   216 RWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSA 275
             R  P  ER+RAV    GG + G+ +GL+L+P ++        F +FGL G  W + +   
Sbjct:   216 RTIPVKERSRAVGFVFGGLSLGSVMGLLLAPPIIETFNWESVFYLFGLLGVGWFVGFQFL 275

Query:   276 TSSTPD-RHPQIS-KYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVAN 333
                    +  +IS  ++ E   +E+     +G+  K      P++        W++I  +
Sbjct:   276 NEEEVSYKGNEISTSHKSENATKEE-----LGSSLKEI----PWKSFFQSPAVWAMIYTH 326

Query:   334 AMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTS 393
                SWG +  LSW+P YF+    ++L +A+W S +P         L    +D LI  G  
Sbjct:   327 FCGSWGHYTCLSWLPTYFSEALSLNLTEAAWVSILPPLASIVVTSLASQFADYLITNGVD 386

Query:   394 VTLTRKILQSIGFIAPGIA--LIGLTAAKSPVMASAWLTLAIGMKSFSHSG 442
              T  RKI Q+I F+AP I   L  +     P      LT  + + SF+ SG
Sbjct:   387 TTTVRKICQTIAFVAPAICMTLSSVDIGLPPWEIVGILTAGLALSSFALSG 437

GO:0009507 "chloroplast" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0005315 "inorganic phosphate transmembrane transporter activity" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0015706 "nitrate transport" evidence=RCA

UNIPROTKB|E1B7R3 SLC17A5 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
 Identities = 106/319 (33%), Positives = 166/319 (52%)

Query:   131 WSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLL 190
             W     G +  SF +GY+++ I GG +    GGK+++ +GV   ++ T  TP AAD    
Sbjct:   103 WDAETQGWILGSFFYGYIITQIPGGYVASRSGGKLLLGFGVLGTAVFTLFTPLAADFGFG 162

Query:   191 ALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS 250
             AL+A+RA+ GL EGV  PAM+ M + W P  ER++ ++I+  G   G  + L LS ++  
Sbjct:   163 ALVALRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLSISYAGAQLGTVVSLPLSGVICY 222

Query:   251 QAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKP 310
                    F  FGL G +W ++W+   S TP+ H  I+ YE EYIL   +  L   +  K 
Sbjct:   223 YMNWTYVFYFFGLVGIIWFILWICLVSDTPETHKTITPYEKEYILSSLKNQL---SSQKS 279

Query:   311 ATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPW 370
                IP    +L  +P W+I+VA+  ++W F+ +L+ +P Y   V   ++++  + SAVP+
Sbjct:   280 VPWIP----MLKSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEVLRFNIQENGFLSAVPY 335

Query:   371 SVMAFTGYLGGLLSDMLIQRGTSVTL-TRKILQSIGFIAPGIALI--GLTAAKSPVMASA 427
                     L G  +D L  R    TL  R++   IG I P I L+  G        +A A
Sbjct:   336 LGCWLCMILSGQAADNLRARWNFSTLWVRRVFSLIGMIGPAIFLVAAGFIGCDYS-LAVA 394

Query:   428 WLTLAIGMKSFSHSGFLVN 446
             +LT++  +  F  SGF +N
Sbjct:   395 FLTISTTLGGFCSSGFSIN 413

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

GO:0015739 "sialic acid transport" evidence=IEA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1RQG9 SLC17A5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 457 (165.9 bits), Expect = 2.8e-43, P = 2.8e-43
 Identities = 107/321 (33%), Positives = 169/321 (52%)

Query:   131 WSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLL 190
             W+    G +  SF +GY+++ I GG +    GGK+++ +G+   S+ T LTP AAD  + 
Sbjct:   103 WNAETQGWILGSFFYGYIITQIPGGYIASRSGGKLLLGFGILGTSVFTLLTPLAADFGVG 162

Query:   191 ALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAI--AMGGFTSGNAIGLVLSPIL 248
             AL+A+RA+ GL EGV  PAM+ M + W P  ER++ ++I  A+ G   G  + L LS I+
Sbjct:   163 ALIALRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLSISYAVLGAQLGTVVSLPLSGII 222

Query:   249 MSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKH 308
                      F +FGL G +W ++W    S TPD H  IS YE EYIL   +  L   +  
Sbjct:   223 CFYLNWTYVFYLFGLVGIIWFILWTWLVSDTPDTHRTISPYEKEYILSSLRNQL---SSQ 279

Query:   309 KPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAV 368
             K    IP    +L  +P W+I+VA+  ++W F+ +L+ +P Y   V   ++++  + SAV
Sbjct:   280 KSVPWIP----MLKSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEVLRFNIQENGFLSAV 335

Query:   369 PWSVMAFTGYLGGLLSDMLIQRGTSVTL-TRKILQSIGFIAPGIALI--GLTAAKSPVMA 425
             P+        L G  +D L  +    TL  R++   IG   P + L+  G        +A
Sbjct:   336 PYFGCWVCMILSGQAADNLRAKWNFSTLCVRRVFSLIGMFGPAVFLVAAGFIGCDYS-LA 394

Query:   426 SAWLTLAIGMKSFSHSGFLVN 446
              A+LT++  +  F  SGF ++
Sbjct:   395 VAFLTISTTLGGFCSSGFSIS 415

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

GO:0015739 "sialic acid transport" evidence=IEA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:1924105 Slc17a5 "solute carrier family 17 (anion/sugar transporter), member 5" [Mus musculus (taxid:10090)]

 Score = 457 (165.9 bits), Expect = 2.8e-43, P = 2.8e-43
 Identities = 99/319 (31%), Positives = 167/319 (52%)

Query:   131 WSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLL 190
             W     G +  SF +GY+V+ I GG +    GGK+++  G+   S+ T  TP AAD  ++
Sbjct:   103 WDAETQGWILGSFFYGYIVTQIPGGYIASRVGGKLLLGLGILGTSVFTLFTPLAADLGVV 162

Query:   191 ALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS 250
              L+ +RA+ GL EGV  PAM+ M + W P  ER++ + I+  G   G  I L LS I+  
Sbjct:   163 TLVVLRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLTISYAGAQLGTVISLPLSGIICY 222

Query:   251 QAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKP 310
                    F +FG+ G +W ++W+   S TP+ H  IS YE EYI+   +  L   +  K 
Sbjct:   223 YMNWTYVFYLFGIVGIVWFILWMWIVSDTPETHKTISHYEKEYIVSSLKNQL---SSQK- 278

Query:   311 ATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPW 370
                + P+  +L  +P W+I+VA+  ++W F+ +L+ +P Y   +   ++++  + SA+P+
Sbjct:   279 ---VVPWGSILKSLPLWAIVVAHFSYNWSFYTLLTLLPTYMKEILRFNVQENGFLSALPY 335

Query:   371 SVMAFTGYLGGLLSDML-IQRGTSVTLTRKILQSIGFIAPGIALI--GLTAAKSPVMASA 427
                     L G  +D L ++   S    R+I   +G + P + L+  G        +A A
Sbjct:   336 FGCWLCMILCGQAADYLRVKWNFSTISVRRIFSLVGMVGPAVFLVAAGFIGCDYS-LAVA 394

Query:   428 WLTLAIGMKSFSHSGFLVN 446
             +LT++  +  F+ SGF +N
Sbjct:   395 FLTISTTLGGFASSGFSIN 413

GO:0005764 "lysosome" evidence=ISO

GO:0005765 "lysosomal membrane" evidence=ISO

GO:0005886 "plasma membrane" evidence=IDA

GO:0006810 "transport" evidence=IEA

GO:0006865 "amino acid transport" evidence=IEA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=ISO

GO:0015293 "symporter activity" evidence=IEA

GO:0015739 "sialic acid transport" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IDA

GO:0030054 "cell junction" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0045202 "synapse" evidence=IEA

GO:0055085 "transmembrane transport" evidence=ISO

RGD|1311388 Slc17a5 "solute carrier family 17 (anion/sugar transporter), member 5" [Rattus norvegicus (taxid:10116)]

 Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
 Identities = 100/319 (31%), Positives = 168/319 (52%)

Query:   131 WSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLL 190
             W     G +  SF +GY+V+ I GG +    GGK+++  G+   ++ T  TP AAD  ++
Sbjct:   103 WDAETQGWILGSFFYGYIVTQIPGGYMASRIGGKLLLGLGILGTAVFTLFTPLAADLGVV 162

Query:   191 ALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS 250
             AL+ +RA+ GL EGV  PAM+ M + W P  ER++ + I+  G   G  I L LS I+  
Sbjct:   163 ALIVLRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLTISYAGAQLGTVISLPLSGIICY 222

Query:   251 QAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKP 310
                    F +FGL G +W ++W+   S TP+ H  IS YE EYI+   +  L   +  K 
Sbjct:   223 YMNWTYVFYLFGLVGIVWFILWMWIVSDTPETHKTISHYEKEYIVSSLKNQL---SSQK- 278

Query:   311 ATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPW 370
                + P+  +L  +P W+I+VA+  ++W F+ +L+ +P Y   +   ++++  + SA+P+
Sbjct:   279 ---VVPWVSILKSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEILRFNVQENGFLSALPY 335

Query:   371 SVMAFTGYLGGLLSDML-IQRGTSVTLTRKILQSIGFIAPGIALI--GLTAAKSPVMASA 427
                     + G  +D L ++   S    R+I   IG + P + L+  G        +A A
Sbjct:   336 FGCWLCMIVCGQAADYLRVKWNFSTISVRRIFSLIGMVGPAVFLVAAGFIGCDYS-LAVA 394

Query:   428 WLTLAIGMKSFSHSGFLVN 446
             +LT++  +  F+ SGF +N
Sbjct:   395 FLTISTTLGGFASSGFSIN 413

GO:0005764 "lysosome" evidence=IDA

GO:0005765 "lysosomal membrane" evidence=IEA;ISO

GO:0005886 "plasma membrane" evidence=IEA;ISO

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=ISO;IDA

GO:0015739 "sialic acid transport" evidence=ISO;IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA;ISO

UNIPROTKB|Q5ZL94 SLC17A5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 455 (165.2 bits), Expect = 4.5e-43, P = 4.5e-43
 Identities = 102/321 (31%), Positives = 166/321 (51%)

Query:   129 HGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTS 188
             + W     G +  SF +GY+++ I GG L    GGK+++ +G+   S+ T LTP AAD  
Sbjct:    90 YSWDADTQGWILGSFFYGYIITQIPGGYLASKIGGKLLLGFGIFGTSVFTLLTPLAADLG 149

Query:   189 LLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPIL 248
             +  L+A+RA+ GL EGV  PAM++M + W P  ER++ ++I+  G   G  + L LS ++
Sbjct:   150 VGYLIAVRALEGLGEGVTFPAMHSMWSSWAPPLERSKLLSISYAGAQLGTVVSLPLSGLI 209

Query:   249 MSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKH 308
                      F IFG  G LW   W+   S  P+ H  IS+ E EYIL   +  L   +  
Sbjct:   210 CYYMNWVYVFYIFGALGVLWFFFWMWLVSDKPETHKSISRIEREYILSSLKDQL---STQ 266

Query:   309 KPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAV 368
             K      P+R +L  +P W+I+VA+  ++W F+ +L+ +P Y   +   D ++  + SA+
Sbjct:   267 KSV----PWRPILESLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEILRFDAQENGFLSAL 322

Query:   369 PWSVMAFTGYLGGLLSDMLIQRGT-SVTLTRKILQSIGFIAPGIALI--GLTAAKSPVMA 425
             P+        L G ++D L ++   S    RK    IG I P + L+  G        +A
Sbjct:   323 PYFGCWLCIILSGQIADHLREKQNFSTVCVRKCFTLIGMIGPAVFLVAAGFIGCNYE-LA 381

Query:   426 SAWLTLAIGMKSFSHSGFLVN 446
              A++T++  +  F  SG+ +N
Sbjct:   382 VAFVTISTTLGGFCTSGYSIN 402

GO:0016021 "integral to membrane" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=IEA

GO:0015739 "sialic acid transport" evidence=IEA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

ZFIN|ZDB-GENE-060929-1158 slc17a5 "solute carrier family 17 (anion/sugar transporter), member 5" [Danio rerio (taxid:7955)]

 Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
 Identities = 103/324 (31%), Positives = 165/324 (50%)

Query:   126 SLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAA 185
             ++ + W+    G +  SF +GY+++ I GG L   YG K ++  G+    + T LTP AA
Sbjct:    93 AMVYDWNSETQGWILGSFFYGYIITQIPGGYLARKYGAKWLLGLGILCTVIFTLLTPLAA 152

Query:   186 DTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLS 245
             D     L+A+R + G+ EGV  PAM+ M A W P  ER+R + I+  G   G  + L LS
Sbjct:   153 DLGAGYLIAVRVLEGIGEGVTYPAMHAMWASWAPPLERSRLLTISYTGAQLGTVVALPLS 212

Query:   246 PILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMG 305
               +         F IFG  G LW  +W+   S++P  H +I++ E  YI+        + 
Sbjct:   213 GQICFYLDWTYVFYIFGAVGLLWFFLWICFVSNSPSSHKRITEAEKTYIMSS------LK 266

Query:   306 NKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWF 365
             N+  P     P+  +   MP W+I+VA+  ++W F+ +L+ +P Y N V    ++Q    
Sbjct:   267 NELSPTQDYIPWTSIFKSMPLWAIVVAHFSYNWTFYTLLTLLPTYMNDVLGFSIQQNGML 326

Query:   366 SAVPWSVMAFTGYLGGLLSDMLIQRGTSVT-LTRKILQSIGFIAPGIALI--GLTAAKSP 422
             SA+P+        LGG L+D+L +R    T + RK    +G   P + L+  G T     
Sbjct:   327 SALPYLGCWLLALLGGQLADLLRERFLFRTVIVRKAFTVVGMAGPAVFLVAAGYTGCNY- 385

Query:   423 VMASAWLTLAIGMKSFSHSGFLVN 446
             ++A A+LT++  +   S SGF +N
Sbjct:   386 ILAVAFLTISSSLGGISASGFNIN 409

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8W0H5	PHT43_ORYSJ	No assigned EC number	0.7011	0.7951	0.6878	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	449
TIGR00894	465	TIGR00894, 2A0114euk, Na(+)-dependent inorganic ph	1e-39
TIGR00893	399	TIGR00893, 2A0114, D-galactonate transporter	3e-32
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	2e-25
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	4e-25
TIGR00881	379	TIGR00881, 2A0104, phosphoglycerate transporter fa	2e-15
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	3e-11
COG2271	448	COG2271, UhpC, Sugar phosphate permease [Carbohydr	5e-11
TIGR00880	141	TIGR00880, 2_A_01_02, Multidrug resistance protein	3e-08
TIGR02332	412	TIGR02332, HpaX, 4-hydroxyphenylacetate permease	2e-07
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	6e-07
COG2223	417	COG2223, NarK, Nitrate/nitrite transporter [Inorga	1e-06
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	6e-06
COG2814	394	COG2814, AraJ, Arabinose efflux permease [Carbohyd	8e-06
TIGR00890	377	TIGR00890, 2A0111, oxalate/formate antiporter fami	2e-05
TIGR04259	405	TIGR04259, oxa_formateAnti, oxalate/formate antipo	5e-05
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	1e-04
PRK11551	406	PRK11551, PRK11551, putative 3-hydroxyphenylpropio	2e-04
TIGR00712	438	TIGR00712, glpT, glycerol-3-phosphate transporter	2e-04
PRK12307	426	PRK12307, PRK12307, putative sialic acid transport	2e-04
TIGR00886	366	TIGR00886, 2A0108, nitrite extrusion protein (nitr	4e-04
COG2211	467	COG2211, MelB, Na+/melibiose symporter and related	0.003

>gnl|CDD|129972 TIGR00894, 2A0114euk, Na(+)-dependent inorganic phosphate cotransporter

 Score =  147 bits (373), Expect = 1e-39
 Identities = 100/372 (26%), Positives = 162/372 (43%), Gaps = 35/372 (9%)

Query: 104 LALALALCN----ADRVVMSVAIV------------------PLSLAHGWSRSFSGIVQS 141
           L+  L +CN    A R+ +S+ +V                   L      +  +SG +Q 
Sbjct: 20  LSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQG 79

Query: 142 SFLWGYLVSPIAGGTLVDYYGGKIIMAW----GVALWSLATFLTPWAADTSLLALLAMRA 197
             L  +    I     V Y  GK +  W    G+ L S+ + + PWAA   +  ++  R 
Sbjct: 80  LILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRV 139

Query: 198 VVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILM-SQAGIFG 256
           + GLA+G   PA + ++ +W P  ER+R + ++  GF  G  I L +S  L  S  G   
Sbjct: 140 IQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPM 199

Query: 257 PFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPP 316
            F +FG+ G  W L+W    +  P  HP ISK+E +YI    Q       +  P   IP 
Sbjct: 200 IFYVFGIVGCAWSLLWFVFPADDPSIHPCISKFEKKYINSSLQGQKGSTRQSLPIKAIP- 258

Query: 317 FRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFT 376
                  +P W+I  A   H W + ++ +++P + ++V  +  ++    S++P+      
Sbjct: 259 -----KSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLC 313

Query: 377 GYLGGLLSDMLIQRGT-SVTLTRKILQSIGFIAPGIALI-GLTAAKSPVMASAWLTLAIG 434
               G L+D L    T S+T  RKI   IG + PGI        + +  +    LTLA  
Sbjct: 314 SIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANA 373

Query: 435 MKSFSHSGFLVN 446
           + S   +G L+N
Sbjct: 374 VSSGPLAGVLIN 385

[Transport and binding proteins, Anions]. Length = 465

>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter

 Score =  126 bits (318), Expect = 3e-32
 Identities = 88/338 (26%), Positives = 144/338 (42%), Gaps = 13/338 (3%)

Query: 106 LALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKI 165
           L   +   DR  +S A   L    G S +  G V S+F WGY+V    GG L+D +G + 
Sbjct: 1   LVTVINYLDRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARK 60

Query: 166 IMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERAR 225
            +A  + +W + T L   A   + ++L  +R ++G AE    P +  +VA WFP +ERA 
Sbjct: 61  TLAVFIVIWGVFTGLQ--AFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERAT 118

Query: 226 AVAIAMGGFTSGNAIGLVL-SPILMSQAGIFG---PFVIFGLSGFLWVLVWLSATSSTPD 281
           AV+I    F S   +G ++  P++      F     F+I G+ G +W ++WL      P 
Sbjct: 119 AVSI----FNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWL-KFIPDPP 173

Query: 282 RHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFF 341
           +  +    E +YI            K          + LL     W + +   + + G  
Sbjct: 174 QKAKWLTEEEKYI-VVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLG 232

Query: 342 VILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKIL 401
             L+W P Y      + + +A + +++P  V      LGG LSD+L++RG S+   RK  
Sbjct: 233 FFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARK-T 291

Query: 402 QSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFS 439
             I  +   + +        P  A A + L        
Sbjct: 292 AIIAGLVLSLLMFATNYVNIPYAALALVALGFFGLGAG 329

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score =  105 bits (265), Expect = 2e-25
 Identities = 73/333 (21%), Positives = 136/333 (40%), Gaps = 28/333 (8%)

Query: 103 MLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYG 162
           +   A        ++     + L+   G S +  G++ ++F  GY ++    G L D +G
Sbjct: 1   LFLAAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFG 60

Query: 163 GKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTE 222
            + ++  G+ L++L   L  +A+  SL  LL +R + GL  G   PA   ++A WFP  E
Sbjct: 61  RRRVLLIGLLLFALGLLLLLFAS--SLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEE 118

Query: 223 RARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDR 282
           R RA+ +   GF  G A+G +L  +L S  G    F+I  +   L  ++           
Sbjct: 119 RGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVLAAL-------- 170

Query: 283 HPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFV 342
                      + R   +        +    + P  +LL + P   +++A  +  + FF 
Sbjct: 171 ----------LLPRPPPESKRPKPAEEAPAPLVPAWKLLLRDPVLWLLLALLLFGFAFFA 220

Query: 343 ILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQ 402
           +L+++P+Y   V  +    A     +   + A    L G LSD L +R       R++L 
Sbjct: 221 LLTYLPLY-QEVLGLSALLAGLLLGLAGLLGAIGRLLLGRLSDRLGRR-------RRLLL 272

Query: 403 SIGFIAPGIALIGLTAAKSPVMASAWLTLAIGM 435
           ++  +      + L +     +      L +G 
Sbjct: 273 ALLLLILAALGLALLSLTESSLWLLVALLLLGF 305

Length = 346

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score =  105 bits (264), Expect = 4e-25
 Identities = 82/331 (24%), Positives = 137/331 (41%), Gaps = 57/331 (17%)

Query: 101 VSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDY 160
           + +L L   L   DR ++S A+  L+   G S S +G++ S+F  GY +  +  G L D 
Sbjct: 1   LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR 60

Query: 161 YGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQ 220
           +G + ++  G+ L++L + L  +A  +SL  LL  R ++GL  G   PA   ++A WFP 
Sbjct: 61  FGRRRVLLLGLLLFALGSLLLAFA--SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPP 118

Query: 221 TERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTP 280
            ER RA+ +   GF  G  +G +L  +L    G    F+I  + G L  L+         
Sbjct: 119 KERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLL-------- 170

Query: 281 DRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGF 340
                                                  L        + +A  + S+G+
Sbjct: 171 ---------------------------------------LFLLRLLLLLALAFFLLSFGY 191

Query: 341 FVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKI 400
           + +L+++P+Y   V  +   +A    ++          LGGLLSD L          R++
Sbjct: 192 YGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLG--------RRRL 243

Query: 401 LQSIGFIAPGIALIGLTAAKSPVMASAWLTL 431
           L  IG +   + L+ L  A S  +    L L
Sbjct: 244 LLLIGLLLAALGLLLLALAPSLALLLVALLL 274

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein

 Score = 77.4 bits (191), Expect = 2e-15
 Identities = 66/336 (19%), Positives = 123/336 (36%), Gaps = 21/336 (6%)

Query: 109 ALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMA 168
           A     R   ++A+  L    G S++  G++ SSF   Y +S    G++ D    ++ + 
Sbjct: 5   AAYYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLP 64

Query: 169 WGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVA 228
            G+ L ++      ++  TSL  + A+ A+ G+ +G+  P     V +WF ++ER   V+
Sbjct: 65  IGLILCAIVNLFFGFS--TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVS 122

Query: 229 IAMGGFTSGNAIGLVLSPILMSQAGIFGP----FVIFGLSGFLWVLVWLSATSSTPDRHP 284
                   G  +   L P+++            F++ G+   +  L+       +P +  
Sbjct: 123 FWNCSHNVGGGL---LPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDSP-QSC 178

Query: 285 QISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVIL 344
            +   E                +     +    + +L     W I +           IL
Sbjct: 179 GLPPAEEMPNEEPDGDAEKKEEELTKKQIF--LQYVLLNKVLWYISLGYVFVYVVRTGIL 236

Query: 345 SWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTG-YLGGLLSDMLIQ-RGTSVTLTRKILQ 402
            W P+Y          +ASW   +   +    G  L G LSD L   R   + +    L 
Sbjct: 237 DWSPLYLTQEKGFSKEKASWAFTLY-ELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMAL- 294

Query: 403 SIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSF 438
               I   + +  L  A +P+M    L  A+G   +
Sbjct: 295 ----IIVSLLVYWLNPAANPLMDLICL-FALGFLVY 325

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 379

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 64.3 bits (157), Expect = 3e-11
 Identities = 60/265 (22%), Positives = 105/265 (39%), Gaps = 13/265 (4%)

Query: 95  SERVKVVSMLALALALCN-ADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIA 153
           S       +L+  + L +  D   M  A   +S   G      G + S+ L G     + 
Sbjct: 12  SRYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALF 71

Query: 154 GGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNM 213
            G L D  G + ++ W + L+S+ T L   A  T++  LL +R + GL  G  +P +N +
Sbjct: 72  FGPLADRIGRRRVLLWSILLFSVFTLLCALA--TNVTQLLILRFLAGLGLGGLMPNLNAL 129

Query: 214 VARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGL-SGFLWVLVW 272
           V+ + P+  R  AV +   G+  G A+G  L+  L+   G    F + G+    L +L+ 
Sbjct: 130 VSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLM 189

Query: 273 LSATSS---TPDRHPQISKYELEYILREKQKPLLMG---NKHKPATVIPPFRRLLSK--- 323
                S      + P+  +  +  I  + Q          K    T    F+ L      
Sbjct: 190 RFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKALFQGKTA 249

Query: 324 MPTWSIIVANAMHSWGFFVILSWMP 348
             T  + +   M   G + + +W+P
Sbjct: 250 RITVLLWLLYFMLLVGVYFLTNWLP 274

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|225180 COG2271, UhpC, Sugar phosphate permease [Carbohydrate transport and metabolism]

 Score = 63.8 bits (156), Expect = 5e-11
 Identities = 64/289 (22%), Positives = 110/289 (38%), Gaps = 42/289 (14%)

Query: 119 SVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLAT 178
           ++A+  L    G S++  GI+ S+F   Y VS    G L D    +  MA+G+ L ++  
Sbjct: 49  NLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVN 108

Query: 179 FLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGN 238
            L  +    SL     +  + G  +G+  P     +  WF + ER    +I    + + +
Sbjct: 109 IL--FGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSI----WNTSH 162

Query: 239 AIGLVLSPILMSQAGIF------GPFVIFGLSGFLWVLVWLSATSSTPDR--HPQISKYE 290
            IG  L+P++   A           F   G+   +  L+ L      P     P I +Y 
Sbjct: 163 NIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYR 222

Query: 291 LEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPT----WSIIVANAMHSWGFFV---- 342
            + +   ++         K    +  ++  +  +      W + +AN       FV    
Sbjct: 223 GDPLEIYEE--------EKENEGLTAWQIFVKYVLKNKLIWLLALAN------VFVYVVR 268

Query: 343 --ILSWMPIYFNFVYHIDLRQASW-FSAVPWSVMAFTG-YLGGLLSDML 387
             I  W P+Y + V    L +A+W  S    +     G  L G LSD L
Sbjct: 269 YGINDWGPLYLSEVKGFSLVKANWAISLFEVA--GLPGTLLAGWLSDKL 315

Length = 448

>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein

 Score = 51.9 bits (125), Expect = 3e-08
 Identities = 31/127 (24%), Positives = 58/127 (45%), Gaps = 2/127 (1%)

Query: 137 GIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMR 196
           G++ + +  G L+     G L D +G K ++  G+ ++ L+T +   A  +++  L+  R
Sbjct: 1   GLLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMF--ALSSNITVLIIAR 58

Query: 197 AVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFG 256
            + G     AL A   ++A  +P  ER  A+ +   G   G  +G  L  +L    G   
Sbjct: 59  FLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRA 118

Query: 257 PFVIFGL 263
           PF+   +
Sbjct: 119 PFLFLAI 125

Length = 141

>gnl|CDD|131385 TIGR02332, HpaX, 4-hydroxyphenylacetate permease

 Score = 52.7 bits (126), Expect = 2e-07
 Identities = 50/184 (27%), Positives = 87/184 (47%), Gaps = 10/184 (5%)

Query: 114 DRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVAL 173
           DR+ +  A + +    G S +  G+  + F   Y++  I    ++   G +  +A  + L
Sbjct: 23  DRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVL 82

Query: 174 WSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGG 233
           W +A+  T +A  T   +L  +R +VG+AE   LP +   +  WFP   RARA A+ M  
Sbjct: 83  WGIASTATMFA--TGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIA 140

Query: 234 FTSGNAIGLVLSPILMSQAGIF---GPFVIFGLSGF----LWVLVWLSATSSTPDRHPQI 286
                A+GL+LS  +++  G+    G   +F L GF    L V+ W      +PD+   +
Sbjct: 141 MPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWF-WLDDSPDKAKWL 199

Query: 287 SKYE 290
            + +
Sbjct: 200 DEED 203

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PMID:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. Length = 412

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 50.8 bits (122), Expect = 6e-07
 Identities = 39/159 (24%), Positives = 72/159 (45%), Gaps = 3/159 (1%)

Query: 116 VVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGK-IIMAWGVALW 174
            +++   + L    G S + +G++ S F  G ++  + GG L D  G + +++  G+ L 
Sbjct: 193 GLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLA 252

Query: 175 SLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGF 234
           +L   L   A   +LL +     ++G   G A PA+  + +   P   R  A  +     
Sbjct: 253 ALGLLLLALAPSLALLLVAL--LLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFG 310

Query: 235 TSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWL 273
           + G A+G +L+ +L+   G  G F+I      L  L+ L
Sbjct: 311 SLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLL 349

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|225133 COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 55/284 (19%), Positives = 101/284 (35%), Gaps = 32/284 (11%)

Query: 155 GTLVDYYGGKIIMAWGVALWSLATFLTPWA-ADTSLLALLAMRAVVGLAEG---VALPAM 210
           G L D +GG+      + L  +      +A    S   LL +  ++GLA     V +P  
Sbjct: 70  GFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGASFAVGMP-- 127

Query: 211 NNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVL 270
               + +FP+ ++  A+ IA  G   G A+  +++P++    G      + G+      +
Sbjct: 128 --NASFFFPKEKQGLALGIAGAG-NLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAI 184

Query: 271 VWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSII 330
             + A     D              R   KP L              + + S   TW + 
Sbjct: 185 AAVLAWLGMNDVPE----------HRASVKPQLP----------AQLKAVFSNKDTWLLS 224

Query: 331 VANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR 390
           +       GF    +++P+Y    + +    A   + +   + A    LGG LSD +   
Sbjct: 225 LLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRI--G 282

Query: 391 GTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIG 434
           G  VTL   +  ++      + L G        +    + LA+ 
Sbjct: 283 GRRVTLAVFVGMALAAALLSLFLTG-FGHGGSFVVFVAVFLALF 325

Length = 417

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score = 48.1 bits (115), Expect = 6e-06
 Identities = 24/79 (30%), Positives = 35/79 (44%)

Query: 128 AHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADT 187
           A   S   SG++ S F  G L+  +  G L D +G K  +  G  L+ +   L  +A   
Sbjct: 40  ACAASTVLSGLIVSIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGK 99

Query: 188 SLLALLAMRAVVGLAEGVA 206
           S   L+  R +VGL  G  
Sbjct: 100 SFYMLIVGRVIVGLGVGGI 118

Length = 449

>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]

 Score = 47.6 bits (114), Expect = 8e-06
 Identities = 59/297 (19%), Positives = 100/297 (33%), Gaps = 31/297 (10%)

Query: 93  ITSERVKVVSMLALALALC----NADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYL 148
             +   K + +  LALAL          V    + P++   G S   +G + +++  G  
Sbjct: 3   TPATARKPMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVA 62

Query: 149 VSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALP 208
           +       L      + ++   +AL+ ++  L+  A   S   LL  RA+ GLA GV   
Sbjct: 63  LGAPLLALLTGRLERRRLLLGLLALFIVSNLLS--ALAPSFAVLLLARALAGLAHGVFWS 120

Query: 209 AMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLW 268
               + AR  P  +R RA+A+   G T    +G+ L   L     +FG    F     L 
Sbjct: 121 IAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFL---GQLFGWRATFLAIAVLA 177

Query: 269 VLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWS 328
           +L  L      P                                 +    RLL +     
Sbjct: 178 LLALLLLWKLLPPS----------------------EISGSLPGPLRTLLRLLRRPGVLL 215

Query: 329 IIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSD 385
            ++A  +   G F + +++  +   V    +   S               LGG L+D
Sbjct: 216 GLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLAD 272

Length = 394

>gnl|CDD|233171 TIGR00890, 2A0111, oxalate/formate antiporter family transporter

 Score = 46.7 bits (111), Expect = 2e-05
 Identities = 37/141 (26%), Positives = 57/141 (40%), Gaps = 3/141 (2%)

Query: 123 VPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTP 182
            PL    G   +   I  +  L G  +S   GG L D +G + +   G  L+ L      
Sbjct: 27  PPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFY- 85

Query: 183 WAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGL 242
            A   SL AL     +     G+A     N   +WFP  +R  A  I +GG+  G+ I  
Sbjct: 86  -AIADSLAALYLTYGLASAGVGIAYGIALNTAVKWFPD-KRGLASGIIIGGYGLGSFILS 143

Query: 243 VLSPILMSQAGIFGPFVIFGL 263
            L   +++  G+   F+  G+
Sbjct: 144 PLITSVINLEGVPAAFIYMGI 164

This subfamily belongs to the major facilitator family. Members include the oxalate/formate antiporter of Oxalobacter formigenes, where one substrate is decarboxylated in the cytosol into the other to consume a proton and drive an ion gradient [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 377

>gnl|CDD|234525 TIGR04259, oxa_formateAnti, oxalate/formate antiporter

 Score = 45.1 bits (107), Expect = 5e-05
 Identities = 42/144 (29%), Positives = 64/144 (44%), Gaps = 11/144 (7%)

Query: 124 PLSLAHGWSRSFSGIVQSSFLWGYLVS----PIAGGTLVDYYGGKIIMAWGVALWSLATF 179
           P+   HGW R+    +Q +F    +      PI  G  VD YG +I++ +G  +  L   
Sbjct: 28  PIDATHGWGRA---AIQVAFTLFVVTETWLVPI-EGWFVDKYGPRIVVMFGGIMCGLGWV 83

Query: 180 LTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNA 239
           L  +A   SL AL A   V G+  G           +WFP  +R  A  +   GF +G A
Sbjct: 84  LNAYA--DSLPALYAAAVVAGIGAGAVYGTCVGNALKWFPD-KRGLAAGLTAAGFGAGAA 140

Query: 240 IGLVLSPILMSQAGIFGPFVIFGL 263
           + +V    ++  +G    F+ FGL
Sbjct: 141 LTVVPIAAMIKVSGYQAAFMYFGL 164

This model represents a subgroup of the more broadly defined model TIGR00890, which in turn belongs to the Major Facilitator transporter family. Seed members for this family include the known oxalate/formate antiporter of Oxalobacter formigenes, as well as transporter subunits co-clustered with the two genes of a system that decarboxylates oxalate into formate. In many of these cassettes, two subunits are found rather than one, suggesting the antiporter is sometimes homodimeric, sometimes heterodimeric. Length = 405

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 44.0 bits (104), Expect = 1e-04
 Identities = 36/165 (21%), Positives = 58/165 (35%), Gaps = 1/165 (0%)

Query: 78  APNEDEALAPNFLEFITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSG 137
            P   E      +          V  L LAL L       +   +       G S   +G
Sbjct: 181 RPKPAEEAPAPLVPAWKLLLRDPVLWLLLALLLFGFAFFALLTYLPLYQEVLGLSALLAG 240

Query: 138 IVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADT-SLLALLAMR 196
           ++         +  +  G L D  G +  +   + L  LA       + T S L LL   
Sbjct: 241 LLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLTESSLWLLVAL 300

Query: 197 AVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIG 241
            ++G   G+  PA+N +V+   P+ ER  A  +     + G A+G
Sbjct: 301 LLLGFGAGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGALG 345

Length = 346

>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

 Score = 43.4 bits (103), Expect = 2e-04
 Identities = 49/192 (25%), Positives = 74/192 (38%), Gaps = 12/192 (6%)

Query: 104 LALALALCNA-------DRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGT 156
           LAL + LC         D     VA   ++   G   +  G   S+ + G L   + GG 
Sbjct: 13  LALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGR 72

Query: 157 LVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVAR 216
           L D  G K I+   VAL+ L +  T  A D     LL  R + G+  G ALP +  + + 
Sbjct: 73  LADRIGRKRILIVSVALFGLFSLATAQAWDFPS--LLVARLLTGVGLGGALPNLIALTSE 130

Query: 217 WFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWV---LVWL 273
                 R  AV++   G   G A+  V+  +    A     F + G+   L V   + WL
Sbjct: 131 AVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWL 190

Query: 274 SATSSTPDRHPQ 285
             + +       
Sbjct: 191 PESRAFAQAAGA 202

Length = 406

>gnl|CDD|129795 TIGR00712, glpT, glycerol-3-phosphate transporter

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 56/254 (22%), Positives = 99/254 (38%), Gaps = 24/254 (9%)

Query: 123 VPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFL-- 180
           +P  +  G+S+   G   S+    Y  S    G++ D    ++ +  G+ L +    L  
Sbjct: 50  MPYLVEQGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMG 109

Query: 181 -TPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAI-----AMGGF 234
             PWA  +S+  +  +  + G  +G+  P     +  W+ Q+ER   V+I      +GG 
Sbjct: 110 FVPWAT-SSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGG 168

Query: 235 TSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDR--HPQISKYELE 292
                + L ++      A ++ P +   +       +       TP     P I +Y  +
Sbjct: 169 IPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAM----MRDTPQSCGLPPIEEYRND 224

Query: 293 YI--LREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIY 350
           Y     EK +  L   +     V+P   +LL     W I +AN       + +L W P Y
Sbjct: 225 YPDDYNEKAEQELTAKEIFMQYVLP--NKLL-----WYIAIANVFVYLLRYGVLDWSPTY 277

Query: 351 FNFVYHIDLRQASW 364
              V H  L ++SW
Sbjct: 278 LKEVKHFALDKSSW 291

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar [Transport and binding proteins, Other]. Length = 438

>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional

 Score = 43.0 bits (101), Expect = 2e-04
 Identities = 42/176 (23%), Positives = 68/176 (38%), Gaps = 14/176 (7%)

Query: 147 YLVSPIAG---GTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAE 203
           ++  P  G   G L D +G K +M W +  +S+ T L+  A+   +L L   R +VG+  
Sbjct: 63  FIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTL--SRFIVGMGM 120

Query: 204 GVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGL 263
                  +      +P+  +++A A  + GF  GN I     P      G    F +   
Sbjct: 121 AGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFV--- 177

Query: 264 SGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRR 319
            G L VL+ +   +  P+     SK   E  L  K K           ++   F R
Sbjct: 178 -GLLPVLLVIYIRARAPE-----SKEWEEAKLSGKGKHSQSAWSVFSLSMKGLFNR 227

Length = 426

>gnl|CDD|233170 TIGR00886, 2A0108, nitrite extrusion protein (nitrite facilitator)

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 54/298 (18%), Positives = 105/298 (35%), Gaps = 42/298 (14%)

Query: 155 GTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMV 214
           G LVD +G +      + L ++       A   S   LL +R  +G+A G     M   +
Sbjct: 58  GFLVDKFGPRYTTTLSLLLLAIPCLWAGLAV-QSYSVLLLLRLFIGIAGGSFASCM-PWI 115

Query: 215 ARWFPQTERARAVAIAMGGFTSGNAI-GLVLSPIL--------MSQAGIFGPFVIFGLSG 265
           + +FP+  +  A+ +A G    G  +   V+ PI+        +     +G   +   +G
Sbjct: 116 SFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAG 175

Query: 266 FLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVI-----PPFRRL 320
            L +   L          P             K     +  K    +V         +  
Sbjct: 176 ILLLPALLIFFVG--ADTP-----------PGKPATGKLSFKGARWSVGTGALGDQLKVF 222

Query: 321 LSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLG 380
             +  TW + +  ++    F  + S   ++F   + +    A  ++++   + +    LG
Sbjct: 223 RDRH-TWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLG 281

Query: 381 GLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSF 438
           G +SD L          RK+L S   +A G  L+ L      +++   L + I +   
Sbjct: 282 GAISDRLGGA-------RKLLMSFLGVAMGAFLVVLG-----LVSPLSLAVFIVLFVA 327

[Transport and binding proteins, Anions]. Length = 366

>gnl|CDD|225121 COG2211, MelB, Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

 Score = 39.5 bits (93), Expect = 0.003
 Identities = 28/131 (21%), Positives = 50/131 (38%), Gaps = 7/131 (5%)

Query: 130 GWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSL 189
           G    F+ ++  +   G L+  I    LV  +G K +   G+ L ++   L  +    S+
Sbjct: 268 GDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSV 327

Query: 190 LALLAMRAVVGLAEGVALPAMNNMVA------RWFPQTERARAVAIAMGGF-TSGNAIGL 242
           + ++    + G+  G+A P    MVA       W     R   V   M  F   G A+  
Sbjct: 328 VLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAG 387

Query: 243 VLSPILMSQAG 253
            +   ++   G
Sbjct: 388 FIPGWILGAIG 398

Length = 467

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	449
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	100.0
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	100.0
KOG2532	466	consensus Permease of the major facilitator superf	100.0
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	100.0
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	100.0
PRK14995	495	methyl viologen resistance protein SmvA; Provision	100.0
PRK03545	390	putative arabinose transporter; Provisional	100.0
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	100.0
PLN00028	476	nitrate transmembrane transporter; Provisional	100.0
PRK11663	434	regulatory protein UhpC; Provisional	100.0
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	100.0
PRK10213	394	nepI ribonucleoside transporter; Reviewed	100.0
TIGR00893	399	2A0114 d-galactonate transporter.	100.0
PRK10406	432	alpha-ketoglutarate transporter; Provisional	100.0
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	100.0
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	100.0
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	100.0
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	100.0
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	100.0
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	100.0
PRK10091	382	MFS transport protein AraJ; Provisional	100.0
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	100.0
TIGR00891	405	2A0112 putative sialic acid transporter.	100.0
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	100.0
PRK09705	393	cynX putative cyanate transporter; Provisional	100.0
PRK03699	394	putative transporter; Provisional	100.0
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	100.0
PRK10642	490	proline/glycine betaine transporter; Provisional	100.0
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.98
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.98
PRK12307	426	putative sialic acid transporter; Provisional	99.98
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.98
TIGR00900	365	2A0121 H+ Antiporter protein.	99.98
PRK10133	438	L-fucose transporter; Provisional	99.97
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.97
KOG2533	495	consensus Permease of the major facilitator superf	99.97
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.97
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.97
PRK10504	471	putative transporter; Provisional	99.97
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.97
PRK09952	438	shikimate transporter; Provisional	99.97
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.97
TIGR00895	398	2A0115 benzoate transport.	99.97
PRK15075	434	citrate-proton symporter; Provisional	99.97
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.97
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.97
TIGR00805	633	oat sodium-independent organic anion transporter.	99.97
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.97
PRK11043	401	putative transporter; Provisional	99.97
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.97
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.97
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.97
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.97
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.96
PRK05122	399	major facilitator superfamily transporter; Provisi	99.96
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.96
PRK03893	496	putative sialic acid transporter; Provisional	99.96
PRK03633	381	putative MFS family transporter protein; Provision	99.96
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.96
PRK10489	417	enterobactin exporter EntS; Provisional	99.96
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.96
PRK09874	408	drug efflux system protein MdtG; Provisional	99.96
PRK12382	392	putative transporter; Provisional	99.95
TIGR00898	505	2A0119 cation transport protein.	99.95
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.95
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.95
PRK15011	393	sugar efflux transporter B; Provisional	99.95
PRK10054	395	putative transporter; Provisional	99.95
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.95
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.95
TIGR00901	356	2A0125 AmpG-related permease.	99.95
PRK11010	491	ampG muropeptide transporter; Validated	99.95
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.94
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.94
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.94
KOG0254	513	consensus Predicted transporter (major facilitator	99.94
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.94
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.94
PRK11902	402	ampG muropeptide transporter; Reviewed	99.94
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.93
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.93
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.93
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.93
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.93
KOG0569	485	consensus Permease of the major facilitator superf	99.93
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.93
PRK09528	420	lacY galactoside permease; Reviewed	99.92
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.91
PTZ00207	591	hypothetical protein; Provisional	99.9
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.9
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.9
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.9
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.9
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.89
KOG2615	451	consensus Permease of the major facilitator superf	99.89
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.88
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.85
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.84
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.84
KOG2563	480	consensus Permease of the major facilitator superf	99.84
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.82
PRK09669	444	putative symporter YagG; Provisional	99.81
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.81
PF13347	428	MFS_2: MFS/sugar transport protein	99.81
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.78
KOG3626	735	consensus Organic anion transporter [Secondary met	99.77
PRK10429	473	melibiose:sodium symporter; Provisional	99.77
PRK09848	448	glucuronide transporter; Provisional	99.76
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.76
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.76
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.75
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.74
PRK11462	460	putative transporter; Provisional	99.73
COG2211	467	MelB Na+/melibiose symporter and related transport	99.71
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.69
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.69
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.68
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.68
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.67
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.66
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.64
PRK05122	399	major facilitator superfamily transporter; Provisi	99.64
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.63
PRK09528	420	lacY galactoside permease; Reviewed	99.63
PRK15011	393	sugar efflux transporter B; Provisional	99.62
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.6
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.6
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.6
PRK10642	490	proline/glycine betaine transporter; Provisional	99.6
PRK12382	392	putative transporter; Provisional	99.59
PRK09874	408	drug efflux system protein MdtG; Provisional	99.58
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.58
PRK10489	417	enterobactin exporter EntS; Provisional	99.57
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.56
PRK03633	381	putative MFS family transporter protein; Provision	99.54
KOG2816	463	consensus Predicted transporter ADD1 (major facili	99.54
PRK03545	390	putative arabinose transporter; Provisional	99.54
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.54
PRK03893	496	putative sialic acid transporter; Provisional	99.54
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.53
PRK09705	393	cynX putative cyanate transporter; Provisional	99.53
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.52
TIGR00893	399	2A0114 d-galactonate transporter.	99.52
PRK03699	394	putative transporter; Provisional	99.52
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.51
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.51
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.5
PRK11663	434	regulatory protein UhpC; Provisional	99.49
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.48
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.46
TIGR00891	405	2A0112 putative sialic acid transporter.	99.46
PRK11010	491	ampG muropeptide transporter; Validated	99.45
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	99.44
PRK12307	426	putative sialic acid transporter; Provisional	99.44
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.44
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.44
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.42
PRK09952	438	shikimate transporter; Provisional	99.41
TIGR00900	365	2A0121 H+ Antiporter protein.	99.4
TIGR00895	398	2A0115 benzoate transport.	99.4
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.4
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.39
PRK10054	395	putative transporter; Provisional	99.38
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.38
PRK10504	471	putative transporter; Provisional	99.36
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.36
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.35
PRK15075	434	citrate-proton symporter; Provisional	99.34
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.34
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.34
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.34
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.33
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.33
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	99.33
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.33
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.32
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.31
PRK10091	382	MFS transport protein AraJ; Provisional	99.31
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	99.28
PRK11902	402	ampG muropeptide transporter; Reviewed	99.28
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.28
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.28
TIGR00898	505	2A0119 cation transport protein.	99.26
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.26
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.25
PLN00028	476	nitrate transmembrane transporter; Provisional	99.25
KOG0569	485	consensus Permease of the major facilitator superf	99.24
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	99.22
PRK09848	448	glucuronide transporter; Provisional	99.22
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.21
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.2
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.2
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.19
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.18
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.17
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.16
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.15
PRK10133	438	L-fucose transporter; Provisional	99.15
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	99.14
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.14
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.13
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.1
PRK09669	444	putative symporter YagG; Provisional	99.09
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.09
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.09
PRK10429	473	melibiose:sodium symporter; Provisional	99.09
COG0477	338	ProP Permeases of the major facilitator superfamil	99.08
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.08
TIGR00901	356	2A0125 AmpG-related permease.	99.08
PF13347	428	MFS_2: MFS/sugar transport protein	99.06
PRK11043	401	putative transporter; Provisional	99.06
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.06
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.05
KOG0637	498	consensus Sucrose transporter and related proteins	99.04
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.03
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.01
KOG3762	618	consensus Predicted transporter [General function	98.92
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.9
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.89
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.88
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.87
PRK11462	460	putative transporter; Provisional	98.87
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.86
COG2211	467	MelB Na+/melibiose symporter and related transport	98.83
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.81
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	98.78
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.77
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.74
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.67
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.66
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.66
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.65
KOG3098	461	consensus Uncharacterized conserved protein [Funct	98.64
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	98.64
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	98.61
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	98.61
KOG2532	466	consensus Permease of the major facilitator superf	98.6
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.57
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	98.57
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	98.54
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.49
KOG3810	433	consensus Micronutrient transporters (folate trans	98.44
KOG0254	513	consensus Predicted transporter (major facilitator	98.44
PTZ00207	591	hypothetical protein; Provisional	98.4
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.4
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	98.4
PF12832	77	MFS_1_like: MFS_1 like family	98.31
COG3202	509	ATP/ADP translocase [Energy production and convers	98.27
KOG2533	495	consensus Permease of the major facilitator superf	98.18
KOG2615	451	consensus Permease of the major facilitator superf	98.14
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	98.13
PRK15462	493	dipeptide/tripeptide permease D; Provisional	98.12
PF12832	77	MFS_1_like: MFS_1 like family	98.02
KOG2816	463	consensus Predicted transporter ADD1 (major facili	97.94
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	97.92
KOG3762	618	consensus Predicted transporter [General function	97.85
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	97.83
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	97.77
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	97.66
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	97.62
PRK03612	521	spermidine synthase; Provisional	97.58
KOG3097	390	consensus Predicted membrane protein [Function unk	97.48
KOG2563	480	consensus Permease of the major facilitator superf	97.3
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	97.04
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.04
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	97.03
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	97.01
KOG3098	461	consensus Uncharacterized conserved protein [Funct	96.85
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	96.83
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	96.66
KOG1330	493	consensus Sugar transporter/spinster transmembrane	96.55
KOG2325	488	consensus Predicted transporter/transmembrane prot	96.29
TIGR00805	633	oat sodium-independent organic anion transporter.	96.08
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	95.88
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	95.76
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	95.51
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	95.46
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	95.21
KOG3880	409	consensus Predicted small molecule transporter inv	95.18
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	93.74
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	92.54
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	92.41
KOG3626	735	consensus Organic anion transporter [Secondary met	92.4
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	92.32
KOG3880	409	consensus Predicted small molecule transporter inv	92.3
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	91.69
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	91.61
KOG4830	412	consensus Predicted sugar transporter [Carbohydrat	90.1
KOG0637	498	consensus Sucrose transporter and related proteins	89.95
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	89.59
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	89.28
COG1230	296	CzcD Co/Zn/Cd efflux system component [Inorganic i	85.54
PF02990	521	EMP70: Endomembrane protein 70; InterPro: IPR00424	85.31
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	85.19
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	84.63
KOG2881	294	consensus Predicted membrane protein [Function unk	84.38
PF06912	209	DUF1275: Protein of unknown function (DUF1275); In	83.59
COG4262	508	Predicted spermidine synthase with an N-terminal m	83.21
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	81.87

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=9.8e-36  Score=271.50  Aligned_cols=268  Identities=21%  Similarity=0.248  Sum_probs=245.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHH
Q 013144           95 SERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALW  174 (449)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~  174 (449)
                      +..+..+..+.++.|..+.........+|++.+|+|+|..+.|+..|+|.++..+++++...+.||+.||++++..+.++
T Consensus         9 ~~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lF   88 (394)
T COG2814           9 KPMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALF   88 (394)
T ss_pred             ccchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHH
Confidence            33466778888889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhccchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCc
Q 013144          175 SLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGI  254 (449)
Q Consensus       175 ~i~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gw  254 (449)
                      .+++++++++  +||+.++++|++.|+..|.+++...++..+..|+++|++++++...+..++.++|.+++.++.+.+||
T Consensus        89 i~~n~l~alA--p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GW  166 (394)
T COG2814          89 IVSNLLSALA--PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGW  166 (394)
T ss_pred             HHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhH
Confidence            9999999999  99999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccCccccCCCCCCCCCchhHHHhhccccHHHHHHHHH
Q 013144          255 FGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANA  334 (449)
Q Consensus       255 r~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (449)
                      |+.|++.+.++++..+..+...|  |++.+.                       +++....+..+++|+|.++...+..+
T Consensus       167 R~~F~~ia~l~ll~~~~~~~~lP--~~~~~~-----------------------~~~~~~~~~~~~l~~p~v~~~l~~t~  221 (394)
T COG2814         167 RATFLAIAVLALLALLLLWKLLP--PSEISG-----------------------SLPGPLRTLLRLLRRPGVLLGLLATF  221 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCC--CccCCC-----------------------CCCcchhHHHHHhcCchHHHHHHHHH
Confidence            99999999999998888888887  221110                       11112223448899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 013144          335 MHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR  390 (449)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~  390 (449)
                      +...+.+..++|+..++++..|+|....++.+..++++.++|+.++|++.|| +.|
T Consensus       222 l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~  276 (394)
T COG2814         222 LFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPR  276 (394)
T ss_pred             HHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cch
Confidence            9999999999999999999999999999999999999999999999999999 555

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2.2e-36  Score=271.59  Aligned_cols=320  Identities=20%  Similarity=0.240  Sum_probs=272.8

Q ss_pred             ccchhHHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHH
Q 013144           92 FITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGV  171 (449)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~  171 (449)
                      ..++.|+.++..+.+++...++.+-.++.+.|.+.++.++|.+|+|++.+.+.+.+.++.++.|.++||.+.|+.+.+++
T Consensus        22 ~y~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gL  101 (448)
T COG2271          22 TYKRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGL  101 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHH
Confidence            34667788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHH--HHHH
Q 013144          172 ALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLS--PILM  249 (449)
Q Consensus       172 ~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~--~~l~  249 (449)
                      ++.++.+++++++  ++.+.+.+.-++.|..+|.-+|.+...++.|++++|||+..++++++.++|..+.|++.  +.+.
T Consensus       102 ilsai~nil~Gfs--~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~  179 (448)
T COG2271         102 ILSAIVNILFGFS--PSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFA  179 (448)
T ss_pred             HHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHH
Confidence            9999999999999  99999999999999999999999999999999999999999999999999999999999  8898


Q ss_pred             hhhCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccCccccCCCCCCCCCc-hhHHHhhccccHHH
Q 013144          250 SQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVI-PPFRRLLSKMPTWS  328 (449)
Q Consensus       250 ~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  328 (449)
                      .+.+||..|++.++++++..++.++..+|+|++..-.+.+|-.....+...   ++++.+..+.+ .-++.+++||.+|.
T Consensus       180 ~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~~d~~e~~~---~~~~~~~ls~~~i~~~YVL~Nk~iW~  256 (448)
T COG2271         180 FHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGDPLEIYE---EEKENEGLTAWQIFVKYVLKNKLIWL  256 (448)
T ss_pred             hccchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHhhcCchhhhh---hhccCCCccHHHHHHHHHHcChHHHH
Confidence            888999999999999999999999999999987654443332111100000   00111101111 23467889999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHhHH
Q 013144          329 IIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIA  408 (449)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~  408 (449)
                      +++..++.+..-+++..|.|.|+.|..|+|..++++..+.+=.++++|.+++|+++||+.+.+      |.....+.++.
T Consensus       257 la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgr------R~p~~~i~~~~  330 (448)
T COG2271         257 LALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGR------RGPMALIFMLL  330 (448)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccc------cchHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999985321      23444555566


Q ss_pred             HHHHHHHhhcccch
Q 013144          409 PGIALIGLTAAKSP  422 (449)
Q Consensus       409 ~~~~~~~~~~~~~~  422 (449)
                      ..++++.+...++.
T Consensus       331 i~~~~~~~w~~~~~  344 (448)
T COG2271         331 ITASLVLYWLAPNG  344 (448)
T ss_pred             HHHHHHHHHcCCCc
Confidence            66666666655543

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2.7e-35  Score=280.41  Aligned_cols=317  Identities=34%  Similarity=0.658  Sum_probs=289.9

Q ss_pred             hhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhh
Q 013144          126 SLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGV  205 (449)
Q Consensus       126 ~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~g~g~  205 (449)
                      ..+++.|..+.+++.+.+..|+.+++++.|++.||||.|+++..+.++.++++++..++...+++.+++.|++||++.|.
T Consensus        65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~  144 (466)
T KOG2532|consen   65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGV  144 (466)
T ss_pred             CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhH
Confidence            34688899999999999999999999999999999999999999999999999999988556777889999999999999


Q ss_pred             hhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhh-hCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 013144          206 ALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQ-AGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHP  284 (449)
Q Consensus       206 ~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~-~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (449)
                      .+|+...+.++|.|++||++..++..++..+|.+++.+++|++.+. +||+++|++.++.+++..++++++..|+|.+.+
T Consensus       145 ~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h~  224 (466)
T KOG2532|consen  145 LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKHP  224 (466)
T ss_pred             HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcccCC
Confidence            9999999999999999999999999999999999999999999998 999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHhccCccccCCCCCCCCCchhHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccchhh
Q 013144          285 QISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASW  364 (449)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~  364 (449)
                      ...++|+++..+.+...      ..++....|++++++++.+|.+.+..+..+++.+.+..+.|.|+++++|++..+.|+
T Consensus       225 ~is~~El~~I~~~k~~~------~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~  298 (466)
T KOG2532|consen  225 NISEKELKYIEKGKSEA------HVKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGF  298 (466)
T ss_pred             CCCHHHHHHHHhccccc------ccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhH
Confidence            99999998887765432      111115679999999999999999999999999999999999999999999999999


Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHhHHHHHHHHHhhcccc--hhHHHHHHHHHHHhhhhcccc
Q 013144          365 FSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKS--PVMASAWLTLAIGMKSFSHSG  442 (449)
Q Consensus       365 ~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  442 (449)
                      +.+++.+...+..+++|.++||+.+|....+..||....++..+.+++++.+.+.+.  .+..+.++.+..++.++..+|
T Consensus       299 ~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~G  378 (466)
T KOG2532|consen  299 LSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISG  378 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhh
Confidence            999999999999999999999998877777788899999999999999999888763  445777788888999999999


Q ss_pred             cccccC
Q 013144          443 FLVNLQ  448 (449)
Q Consensus       443 ~~~~~~  448 (449)
                      ++.|.+
T Consensus       379 f~~~~~  384 (466)
T KOG2532|consen  379 FYKNHQ  384 (466)
T ss_pred             hHhhhh
Confidence            998875

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=100.00  E-value=1.7e-34  Score=277.11  Aligned_cols=293  Identities=20%  Similarity=0.238  Sum_probs=243.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHH
Q 013144           95 SERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALW  174 (449)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~  174 (449)
                      +.+|..+.++++.+++.+++....+.+.|.+.+|+|++..+.|++.+++.+++.+++++.|++.||+|||+++..++++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~   83 (412)
T TIGR02332         4 KLFRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLW   83 (412)
T ss_pred             eehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHH
Confidence            34678888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhccchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHh----
Q 013144          175 SLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS----  250 (449)
Q Consensus       175 ~i~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~----  250 (449)
                      +++.++++++  +|++.+++.|+++|++.+...+....++.|++|+++|+++++++..+..+|.++++.+++++.+    
T Consensus        84 ~~~~~~~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~  161 (412)
T TIGR02332        84 GIASTATMFA--TGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGL  161 (412)
T ss_pred             HHHHHHHHHh--cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            9999999999  9999999999999999999999999999999999999999999999999999999999998874    


Q ss_pred             --hhCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccCc---cccCCCC--C-CCCCchhHHHhhc
Q 013144          251 --QAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKP---LLMGNKH--K-PATVIPPFRRLLS  322 (449)
Q Consensus       251 --~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~--~-~~~~~~~~~~~~~  322 (449)
                        ..|||+.|++.++++++..++.++..||+|++.+...+++.+...+.....   ....+..  + +......+++++ 
T Consensus       162 ~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  240 (412)
T TIGR02332       162 MALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKEMIDNDQLTLEQPEGAFAHAAMPQRSMLREIF-  240 (412)
T ss_pred             CCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHhc-
Confidence              369999999998888777777777778888765444443332222111100   0000000  0 001112344444 


Q ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 013144          323 KMPTWSIIVANAMHSWGFFVILSWMPIYFNFV-YHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR  390 (449)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~  390 (449)
                      +|.+|...+..++.....+.+.+|+|.|+++. .|++..+++.......++.+++.++.|+++||+++|
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r  309 (412)
T TIGR02332       241 TPAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKER  309 (412)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCcc
Confidence            57888888888888888999999999999883 367888889999999999999999999999999876

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=100.00  E-value=3e-33  Score=273.60  Aligned_cols=296  Identities=26%  Similarity=0.505  Sum_probs=252.9

Q ss_pred             cchhHHHHHHHHHHHHHHHHHhHhhhhhhhhhhhh----------------------hcCCCchhhHHHHHHHHHHHHHh
Q 013144           93 ITSERVKVVSMLALALALCNADRVVMSVAIVPLSL----------------------AHGWSRSFSGIVQSSFLWGYLVS  150 (449)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----------------------~~~~~~~~~g~~~s~~~~~~~~~  150 (449)
                      ..+.+|.+..+++++..+++.++...+.+.+.+.+                      +++++..+.|++.+.+.+++.++
T Consensus        13 ~~~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~   92 (465)
T TIGR00894        13 FCSFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQIII   92 (465)
T ss_pred             ccCcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHHH
Confidence            35567888888999999999999999999988876                      78999999999999999999999


Q ss_pred             hccchhhhhhcCCchHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHH
Q 013144          151 PIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIA  230 (449)
Q Consensus       151 ~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~  230 (449)
                      +++.|+++||+|||+++.++.++.+++.+++.++...+++.+++.|+++|++.+...+....++.|++|+++|++++++.
T Consensus        93 ~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  172 (465)
T TIGR00894        93 QIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMS  172 (465)
T ss_pred             HcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHH
Confidence            99999999999999999999999999988875542256888999999999999999999999999999999999999999


Q ss_pred             HHhhhhhhHhHHHHHHHHHhh-hCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccCccccCCCCC
Q 013144          231 MGGFTSGNAIGLVLSPILMSQ-AGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHK  309 (449)
Q Consensus       231 ~~~~~~G~~~g~~l~~~l~~~-~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (449)
                      ..+..+|.++++++++.+.+. .|||+.|++.++++++..++++...+|+|++.++.+++|.+...+...      ++.+
T Consensus       173 ~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~~------~~~~  246 (465)
T TIGR00894       173 TSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCISKFEKKYINSSLQ------GQKG  246 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHhhcc------cccC
Confidence            999999999999999999988 499999999999888877777777777776555444444443322111      1111


Q ss_pred             CCCCchhHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHH
Q 013144          310 PATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQ  389 (449)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~  389 (449)
                      +.....+++++++++.+|...+..++.....+.+.+|+|.|+++.+|++..+.++......++.+++.++.|+++||+++
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~  326 (465)
T TIGR00894       247 STRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKS  326 (465)
T ss_pred             CCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11123468899999999999999999999999999999999999899999999999999999999999999999999987


Q ss_pred             hCCCc
Q 013144          390 RGTSV  394 (449)
Q Consensus       390 ~~~~~  394 (449)
                      |+...
T Consensus       327 ~~~~~  331 (465)
T TIGR00894       327 SKTLS  331 (465)
T ss_pred             cCCCc
Confidence            75443

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=100.00  E-value=1.6e-33  Score=276.67  Aligned_cols=291  Identities=18%  Similarity=0.148  Sum_probs=243.3

Q ss_pred             hHHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHH
Q 013144           96 ERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWS  175 (449)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~  175 (449)
                      ++|..+..++++.++...|....+.++|.+.+++|.+..+.+|+.+.|.++..++.+++|+++||+|||++++++.++..
T Consensus         3 ~~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~   82 (495)
T PRK14995          3 RQWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFG   82 (495)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            45778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhccchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhcc-CcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCc
Q 013144          176 LATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWF-PQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGI  254 (449)
Q Consensus       176 i~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~-~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gw  254 (449)
                      +++++++++  +|++.++++|+++|+|.+...+.....+.+++ |+++|+++++++.....+|..+||.+++.+.++.||
T Consensus        83 ~~~~~~~~a--~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gw  160 (495)
T PRK14995         83 LASLAAAFS--PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYW  160 (495)
T ss_pred             HHHHHHHHc--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCh
Confidence            999999999  99999999999999999998998888887776 679999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhcCCCCCCCCC-CCHHHHHH----------HHHhccCcc--------------------c
Q 013144          255 FGPFVIFGLSGFLWVLVWLSATSSTPDRHPQ-ISKYELEY----------ILREKQKPL--------------------L  303 (449)
Q Consensus       255 r~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----------~~~~~~~~~--------------------~  303 (449)
                      ||.|++...++++..++.++..|++++++.+ .+..+...          ..+......                    .
T Consensus       161 r~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~  240 (495)
T PRK14995        161 GSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLGLFI  240 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHH
Confidence            9999998888777766666666765543221 22111000          000000000                    0


Q ss_pred             cCCCCCCCCCchhHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHHH
Q 013144          304 MGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLL  383 (449)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l  383 (449)
                      ..+. +.+....++ +++|+|.++...+..++.....+....++|.|++..+|+++.++|+...+..++..++.++.|++
T Consensus       241 ~~e~-~~~~p~~~~-~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l  318 (495)
T PRK14995        241 RTQL-AASRPMIDM-RLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGIL  318 (495)
T ss_pred             HHHh-cCCCCCcCH-HHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0011 112222233 68899999888888888888888888999999999999999999999999999999999999999


Q ss_pred             HHHHHHh
Q 013144          384 SDMLIQR  390 (449)
Q Consensus       384 ~dr~g~~  390 (449)
                      .||+|+|
T Consensus       319 ~~r~g~~  325 (495)
T PRK14995        319 VSRLGLR  325 (495)
T ss_pred             HHHcCch
Confidence            9999987

>PRK03545 putative arabinose transporter; Provisional

Probab=100.00  E-value=3.9e-33  Score=266.58  Aligned_cols=267  Identities=15%  Similarity=0.150  Sum_probs=226.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHH
Q 013144           95 SERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALW  174 (449)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~  174 (449)
                      .++|..+..+.+..+..........+.+|.+.+++|.++.+.|++.+.+.+++.+++++.|++.||+|||+++..+.++.
T Consensus         5 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~   84 (390)
T PRK03545          5 KVAWLRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLF   84 (390)
T ss_pred             ccchHHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence            34555555555555555455556667789999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhccchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCc
Q 013144          175 SLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGI  254 (449)
Q Consensus       175 ~i~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gw  254 (449)
                      ++++++++++  +|++.++++|+++|++.+...+...+++.|++|+++|++++++...+.++|..+||++++.+.+..||
T Consensus        85 ~~~~~~~~~~--~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw  162 (390)
T PRK03545         85 IASHVLSALA--WNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGW  162 (390)
T ss_pred             HHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcH
Confidence            9999999999  99999999999999999998999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccCccccCCCCCCCCCchhHHHhhccccHHHHHHHHH
Q 013144          255 FGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANA  334 (449)
Q Consensus       255 r~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (449)
                      |+.|++.++++++..+..+...|+.+++++                           ....+.++.+|+|.++...+..+
T Consensus       163 ~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~  215 (390)
T PRK03545        163 RTTFLAIGGGALITLLLLIKLLPLLPSEHS---------------------------GSLKSLPLLFRRPALVSLYLLTV  215 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCCCCCc---------------------------chHHHHHHHHhCcHHHHHHHHHH
Confidence            999999988877766655555554432110                           01124557888998887766666


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 013144          335 MHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR  390 (449)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~  390 (449)
                      +.....+....+.+.|+++.+|.+..+++.......++.++++++.+++.||+++|
T Consensus       216 ~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~  271 (390)
T PRK03545        216 VVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSG  271 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchh
Confidence            66666666678888888887899999999999999999999999999999999876

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=100.00  E-value=1.6e-33  Score=275.15  Aligned_cols=292  Identities=16%  Similarity=0.100  Sum_probs=238.2

Q ss_pred             chhHHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHH
Q 013144           94 TSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVAL  173 (449)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~  173 (449)
                      .+..+.++.++++.++..+.++..++++.|.+.+++|++..+.|++.+++.+++.+++++.|+++||+|||+++.+++++
T Consensus        24 ~~~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~  103 (467)
T PRK09556         24 FKPFMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLIL  103 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHH
Confidence            44467778888999999999999999999999999999999999999999999999999999999999999999988888


Q ss_pred             HHHHHHHhhh-----ccchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHH
Q 013144          174 WSLATFLTPW-----AADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPIL  248 (449)
Q Consensus       174 ~~i~~~~~~~-----~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l  248 (449)
                      .+++.++.++     +  ++++.+++.|+++|++.+...+...++++||+|+++||+++|++..+.++|.++++++..++
T Consensus       104 ~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~  181 (467)
T PRK09556        104 SAICMLGFGASLGSGS--VSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWG  181 (467)
T ss_pred             HHHHHHHHHHHHhccc--chHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHH
Confidence            8777766554     5  89999999999999999999999999999999999999999999999999999999998877


Q ss_pred             Hhhh---CchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccCccccCCCCCCCCCchhH-HHhhccc
Q 013144          249 MSQA---GIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPF-RRLLSKM  324 (449)
Q Consensus       249 ~~~~---gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  324 (449)
                      .+..   +||..|.+.+++.++..++.++..++.|++.+..+.++..  .+..... ....+.++......+ +..+|+|
T Consensus       182 ~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~  258 (467)
T PRK09556        182 ANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGKAEEIF--GEPISEE-DKETESTDMTKWQIFVEYVLKNP  258 (467)
T ss_pred             HHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCChhhcc--cCccchh-hhccccccCcHHHHHHHHHHcCh
Confidence            6653   6999999888888777777777767766554333222210  0000000 000000011111112 3378999


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 013144          325 PTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR  390 (449)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~  390 (449)
                      .+|...+..++.....++...|.|.|+++.+|++..++++......++.+++.++.|+++||+++|
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r  324 (467)
T PRK09556        259 VIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGR  324 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence            999999999888888888899999999988899999999999999999999999999999999988

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=100.00  E-value=1.4e-31  Score=261.39  Aligned_cols=305  Identities=18%  Similarity=0.174  Sum_probs=233.3

Q ss_pred             HHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHH
Q 013144           97 RVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSL  176 (449)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i  176 (449)
                      +++.+...+...+..........+..|.+.+++|++..+.+++.+.+.+++.+++++.|+++||+|||+++..+.++.++
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~  113 (476)
T PLN00028         34 HMRAFHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAP  113 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence            34555566666777777777888999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhccchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHh------
Q 013144          177 ATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS------  250 (449)
Q Consensus       177 ~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~------  250 (449)
                      +.++++++  ++++.++++|++.|++.+.. .....+++|++|+++||+++++.....++|..+++.+.+.+..      
T Consensus       114 ~~~~~~~~--~s~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~  190 (476)
T PLN00028        114 AVFCMSLV--SSATGFIAVRFFIGFSLATF-VSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAG  190 (476)
T ss_pred             HHHHHHHh--cCHHHHHHHHHHHHHHHHhh-HHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999998  99999999999999998864 4466789999999999999999988888888877766655432      


Q ss_pred             ---hhCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccCccccCCCCCCCCCchhHHHhhccccHH
Q 013144          251 ---QAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTW  327 (449)
Q Consensus       251 ---~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (449)
                         ..|||+.|++.+++.++..++.++..++.|+..    .++.+   ++        .+.++.+....+++.++++++|
T Consensus       191 ~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~~~----~~~~~---~~--------~~~~~~~~~~~~~~~~~~~~~~  255 (476)
T PLN00028        191 APSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPDGN----YRELK---KS--------GTMPKDSFSKVLRYGVTNYRTW  255 (476)
T ss_pred             CcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCCCc----hhhHH---hc--------CccccccHHHHHHHHHcCchhH
Confidence               248999999999888877766666655544321    01100   00        0001111123456778899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHhH
Q 013144          328 SIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFI  407 (449)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~  407 (449)
                      .+.+..++.....+.+..++|.|+.+.+|++..+++.+..+..++.+++++++|+++||++||....  .|+.......+
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~--~r~~~~~~~~~  333 (476)
T PLN00028        256 ILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMR--GRLWALWIVQT  333 (476)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcc--hhHHHHHHHHH
Confidence            8888777766667777889999998888999999999999999999999999999999999874321  12333334444


Q ss_pred             HHHHHHHHhhcccc
Q 013144          408 APGIALIGLTAAKS  421 (449)
Q Consensus       408 ~~~~~~~~~~~~~~  421 (449)
                      +.++.++.+....+
T Consensus       334 l~~i~~~~~~~~~~  347 (476)
T PLN00028        334 LGGVFCIWLGRANS  347 (476)
T ss_pred             HHHHHHHHhcccch
Confidence            44444444444433

>PRK11663 regulatory protein UhpC; Provisional

Probab=100.00  E-value=6.7e-32  Score=261.25  Aligned_cols=289  Identities=18%  Similarity=0.162  Sum_probs=233.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHH
Q 013144           95 SERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALW  174 (449)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~  174 (449)
                      +.++.......+..+..+++...++..+|.+.+++|++..+.|++.+.+.+++.+++++.|++.||+|||+++.++.++.
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~   98 (434)
T PRK11663         19 YWRRHILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIAT   98 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHH
Confidence            34556666777888888888888899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhccchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCc
Q 013144          175 SLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGI  254 (449)
Q Consensus       175 ~i~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gw  254 (449)
                      +++.++++++  ++++.+++.|++.|++.|...+...+++.|++|+++|++++++.+.+.++|..+++.+++.+.+.+||
T Consensus        99 ~~~~~~~~~~--~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw  176 (434)
T PRK11663         99 GIINILFGFS--SSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGW  176 (434)
T ss_pred             HHHHHHHHHH--hHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccH
Confidence            9999999999  99999999999999999998999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccCccccCCCCCCCCCchhH-HHhhccccHHHHHHHH
Q 013144          255 FGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPF-RRLLSKMPTWSIIVAN  333 (449)
Q Consensus       255 r~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  333 (449)
                      |+.|++.+++.++..+...+..+|+|++....+.++.+...++..    .+.+.++.+....+ +..+++|.+|.+.+..
T Consensus       177 ~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (434)
T PRK11663        177 RYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHDALELA----QQQEGAGLSRKEILTKYVLLNPYIWLLSFSY  252 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccccccccc----hhccccCCChhhhHHHHHhcChHHHHHHHHH
Confidence            999999888776665555555566554321111000000000000    00000001111112 2367788899888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHH
Q 013144          334 AMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQ  389 (449)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~  389 (449)
                      ++.......+..|+|.|+++.+|++..+++.......++.++++++.|+++||+.+
T Consensus       253 ~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~  308 (434)
T PRK11663        253 VLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFN  308 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhcc
Confidence            87777888888999999987789999999999999999999999999999999943

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=100.00  E-value=6e-32  Score=254.22  Aligned_cols=252  Identities=13%  Similarity=0.066  Sum_probs=204.5

Q ss_pred             HHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhccchhH
Q 013144          110 LCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSL  189 (449)
Q Consensus       110 ~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~  189 (449)
                      .+...+..+++.+|.+++|+|+++.+.|++.+.+.+++.+++++.|+++||+|||+++..+......+.+.....  +++
T Consensus         2 ~~~~~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~--~~~   79 (368)
T TIGR00903         2 ASQAIWVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDP--FNY   79 (368)
T ss_pred             hhhHHHHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHh--ccH
Confidence            345667788999999999999999999999999999999999999999999999998776665555544433444  689


Q ss_pred             HHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchHHHHHHHHHHHHHH
Q 013144          190 LALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWV  269 (449)
Q Consensus       190 ~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~  269 (449)
                      +.++++|+++|++.+. .+.....++|++|+++|++++++...+..+|..+++++++.+.+.+|||+.|++.++++++..
T Consensus        80 ~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~  158 (368)
T TIGR00903        80 EWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGI  158 (368)
T ss_pred             HHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH
Confidence            9999999999999986 556666779999999999999999999999999999999999999999999999888888877


Q ss_pred             HHHHHhcCCCCCCCCCCCHHHHHHHHHhccCccccCCCCCCCCCchhHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHH
Q 013144          270 LVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPI  349 (449)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (449)
                      +++++..||+|+++++..+.                     ++...++++++|+|.+|.+.+..++.....+.+.+|+|.
T Consensus       159 ~~~~~~lp~~p~~~~~~~~~---------------------~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~  217 (368)
T TIGR00903       159 ILVLAALPALPFQAAEGFGF---------------------KDAVKEFGALAGRKDLWIIGAILGFGVALFDNLAIWLEA  217 (368)
T ss_pred             HHHHHHcCCCCCCCCCCcch---------------------HHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777788876543210000                     000125678999999999999999999999999999999


Q ss_pred             HHHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 013144          350 YFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR  390 (449)
Q Consensus       350 ~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~  390 (449)
                      |+++ .|++.. .+.......+.+.+   ..++++||..||
T Consensus       218 ~L~~-~g~s~~-~~~~~~l~~~~g~~---g~~~~~d~~~r~  253 (368)
T TIGR00903       218 ALRP-AGLEDI-AGDAVALAILAGLI---GVAVIPDRVARA  253 (368)
T ss_pred             HHHH-CCCChH-HHHHHHHHHHHHHH---HHHHhhHHhhhh
Confidence            9987 588764 55555555444444   457888888665

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=100.00  E-value=2.7e-31  Score=253.43  Aligned_cols=264  Identities=17%  Similarity=0.180  Sum_probs=219.1

Q ss_pred             HHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHH
Q 013144           97 RVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSL  176 (449)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i  176 (449)
                      .|..+..+.+..+............+|++.+++|.++.+.++..+++.++..+++++.|++.||+|||+++..+.++.++
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~   97 (394)
T PRK10213         18 NWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTL   97 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHH
Confidence            56665666666555555666666778999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhccchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchH
Q 013144          177 ATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFG  256 (449)
Q Consensus       177 ~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~  256 (449)
                      +.++++++  ++++.+++.|+++|++.+...+...+++.|++|+++|++++++...+.++|..+||++++.+.+.+|||+
T Consensus        98 ~~~~~~~~--~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~  175 (394)
T PRK10213         98 SCLLVSFA--NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRN  175 (394)
T ss_pred             HHHHHHHH--ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHH
Confidence            99999998  9999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccCccccCCCCCCCCCchhHHHhhccccHHHHHHHHHHH
Q 013144          257 PFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMH  336 (449)
Q Consensus       257 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (449)
                      .|++.++++++..+......||++++++                           ....+.++.+|+|.++...+..++.
T Consensus       176 ~f~~~~~l~~~~~l~~~~~~p~~~~~~~---------------------------~~~~~~~~~l~~~~~~~~~~~~~~~  228 (394)
T PRK10213        176 VFNAAAVMGVLCIFWIIKSLPSLPGEPS---------------------------HQKQNTFRLLQRPGVMAGMIAIFMS  228 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCcccc---------------------------cchhHHHHHhcCHHHHHHHHHHHHH
Confidence            9999887776655444444454332110                           0011345778899888877766666


Q ss_pred             HHHHHHHHHHH-HHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 013144          337 SWGFFVILSWM-PIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR  390 (449)
Q Consensus       337 ~~~~~~~~~~~-~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~  390 (449)
                      ....+....++ |.|.+ .+|+++.+.+......+++.+++.++.+++.||.+++
T Consensus       229 ~~~~~~~~~~~~p~~~~-~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~  282 (394)
T PRK10213        229 FAGQFAFFTYIRPVYMN-LAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKL  282 (394)
T ss_pred             HHHHHHHHHHHHHHHHH-hcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence            66666666676 55554 5799999999999999999999999999999985433

>TIGR00893 2A0114 d-galactonate transporter

Probab=100.00  E-value=1.8e-31  Score=255.85  Aligned_cols=280  Identities=27%  Similarity=0.456  Sum_probs=237.8

Q ss_pred             HHHHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhccch
Q 013144          108 LALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADT  187 (449)
Q Consensus       108 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~  187 (449)
                      ++..+++...++...|.+.+++|.++.+.+++.+++.++..++.++.|+++||+|||+++.++.++.+++.++++++  +
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~--~   80 (399)
T TIGR00893         3 TVINYLDRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFA--G   80 (399)
T ss_pred             ehHHHHHHHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHH--c
Confidence            34567788888999999999999999999999999999999999999999999999999999999999999999999  8


Q ss_pred             hHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchHHHHHHHHHHHH
Q 013144          188 SLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFL  267 (449)
Q Consensus       188 ~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~  267 (449)
                      +++.++++|+++|++.+...+....++.|++|+++|++++++......+|..+++.+++.+.+..+||+.|++.+++.++
T Consensus        81 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  160 (399)
T TIGR00893        81 AYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGII  160 (399)
T ss_pred             CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998888877


Q ss_pred             HHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccCccccCCCCCCCCCchhHHHhhccccHHHHHHHHHHHHHHHHHHHHHH
Q 013144          268 WVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWM  347 (449)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (449)
                      ..+..++..++++++++..++++.+...+.....  ..++++++.....+++.+++|+++...+..++..........+.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (399)
T TIGR00893       161 WGVLWLKFIPDPPQKAKWLTEEEKYIVVGGLLAE--QQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWF  238 (399)
T ss_pred             HHHHhhheecCCCCccccCCHHHHhhcchhhccc--cccccccCCCccchHHHhcCHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            7776666666666544333333222111110000  01111222334467788999999999999999899999999999


Q ss_pred             HHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhC
Q 013144          348 PIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRG  391 (449)
Q Consensus       348 ~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~  391 (449)
                      |.|+++.+|.++.++++......++.+++.++.|++.||++||+
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  282 (399)
T TIGR00893       239 PTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRG  282 (399)
T ss_pred             HHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            99999888999999999999999999999999999999999984

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=100.00  E-value=1.8e-31  Score=258.14  Aligned_cols=269  Identities=14%  Similarity=0.096  Sum_probs=211.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhhcC---CCchhhHHHHH---HHHHHHHHhhccchhhhhhcCCchHHH
Q 013144           95 SERVKVVSMLALALALCNADRVVMSVAIVPLSLAHG---WSRSFSGIVQS---SFLWGYLVSPIAGGTLVDYYGGKIIMA  168 (449)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~g~~~s---~~~~~~~~~~~~~G~l~dr~Grr~~l~  168 (449)
                      ++++..+...+++.+++++|...++...|.+.++++   .+..+.+...+   +..++..++++++|+++||+|||+++.
T Consensus        18 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~   97 (432)
T PRK10406         18 RRRIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSML   97 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            345566777788899999999999999999999984   45554444444   444555599999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhccchhHH--------HHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHh
Q 013144          169 WGVALWSLATFLTPWAADTSLL--------ALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAI  240 (449)
Q Consensus       169 ~~~~~~~i~~~~~~~~~~~~~~--------~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~  240 (449)
                      ++++++++++++++++  +++.        .++++|+++|++.|..++...++++|++|+++|+++.++...+...|.++
T Consensus        98 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~  175 (432)
T PRK10406         98 ISVCMMCFGSLVIACL--PGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLL  175 (432)
T ss_pred             HHHHHHHHHHHHHhhc--CCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHH
Confidence            9999999999999998  7653        68999999999999999999999999999999999999999888889888


Q ss_pred             HHHHHHHHH--------hhhCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccCccccCCCCCCCC
Q 013144          241 GLVLSPILM--------SQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPAT  312 (449)
Q Consensus       241 g~~l~~~l~--------~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (449)
                      ++.+...+.        +.+|||++|++.++++++... .....||+++.       +.+             +. +   
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~-~~~~~~e~~~~-------~~~-------------~~-~---  230 (432)
T PRK10406        176 ALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALW-LRRQLDETSQQ-------ETR-------------AL-K---  230 (432)
T ss_pred             HHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHH-HHhcCCCCchH-------HHh-------------hh-c---
Confidence            887765554        257999999987777665432 22223333221       000             00 0   


Q ss_pred             CchhHHHhhccccHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 013144          313 VIPPFRRLLSKMPTWSIIVANAM-HSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR  390 (449)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~  390 (449)
                      ...++++++|+++.+...+...+ ....++.+..|+|.|+++.+|++..+++.......++..++.++.|+++||++||
T Consensus       231 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr  309 (432)
T PRK10406        231 EAGSLKGLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRR  309 (432)
T ss_pred             ccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch
Confidence            01256788888888776665444 3667788889999999887899988888888888888888899999999999988

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=100.00  E-value=5.5e-31  Score=263.55  Aligned_cols=257  Identities=14%  Similarity=0.156  Sum_probs=200.6

Q ss_pred             chhHHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHH
Q 013144           94 TSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVAL  173 (449)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~  173 (449)
                      .+++|.++++++++.+..+++...++.++|.+.++++++..+.+++.+++.++.+++++++|+++||+|||+++++++++
T Consensus       162 ~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil  241 (742)
T TIGR01299       162 GRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSV  241 (742)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence            46678888888889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhh-
Q 013144          174 WSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQA-  252 (449)
Q Consensus       174 ~~i~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~-  252 (449)
                      .+++.++++++  ++++.++++|++.|++.|+..+...+++.|++|+++|++.++++.+++.+|.++++.++..+...+ 
T Consensus       242 ~~i~~ll~afa--~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G  319 (742)
T TIGR01299       242 NGFFAFFSSFV--QGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYG  319 (742)
T ss_pred             HHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999  999999999999999999999999999999999999999999999999999999999887776543 


Q ss_pred             ------------CchHHHHHHHHHHHHHHHHHHHhcCCCCCCCC-CCCHHHHHHHHHhccCccc----------------
Q 013144          253 ------------GIFGPFVIFGLSGFLWVLVWLSATSSTPDRHP-QISKYELEYILREKQKPLL----------------  303 (449)
Q Consensus       253 ------------gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----------------  303 (449)
                                  +||+.+++.++.+++.+ +..+..||+|+... +.+.++.....++......                
T Consensus       320 ~~~~~g~~~~~~gWR~l~~i~~lp~ll~l-l~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~  398 (742)
T TIGR01299       320 WSFQMGSAYQFHSWRVFVIVCAFPCVFAI-GALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIK  398 (742)
T ss_pred             chhccccccccccHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHH
Confidence                        58998888777665544 44566788876421 1112222221111110000                


Q ss_pred             ----cC---C-CCCCC---------------CCchhHHHhhccc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013144          304 ----MG---N-KHKPA---------------TVIPPFRRLLSKM---PTWSIIVANAMHSWGFFVILSWMPIYFNF  353 (449)
Q Consensus       304 ----~~---~-~~~~~---------------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (449)
                          ..   + +.+..               ..+.+++++++.+   +++.+++.+++..++++++..|+|.++.+
T Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~wf~~~~~yygl~~w~P~~~~~  474 (742)
T TIGR01299       399 TIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVWFTLSFGYYGLSVWFPDMIKH  474 (742)
T ss_pred             HhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                00   0 00000               0112355555443   45677778888899999999999988654

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=100.00  E-value=2.1e-31  Score=262.42  Aligned_cols=306  Identities=19%  Similarity=0.175  Sum_probs=247.0

Q ss_pred             HHHHHHHHHHHHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHH
Q 013144          100 VVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATF  179 (449)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~  179 (449)
                      .+..++++.++..++....++.+|.+.+++|.+..+.+|+.+.+.++..++.++.|+++||+|||++++++.++..++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~   82 (485)
T TIGR00711         3 LTIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSL   82 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence            45677788888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhccchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchHHHH
Q 013144          180 LTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFV  259 (449)
Q Consensus       180 ~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~  259 (449)
                      +++++  ++++.++++|+++|++.+...+...+++.|++|+++|+++++++..+..+|..+||.+++.+.++.|||+.|+
T Consensus        83 ~~~~~--~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~  160 (485)
T TIGR00711        83 LCGVA--PNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFL  160 (485)
T ss_pred             HHhCc--CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhh
Confidence            99999  9999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCCC-CCHHHHH----------HHHHhccCccccC--------------------CCC
Q 013144          260 IFGLSGFLWVLVWLSATSSTPDRHPQ-ISKYELE----------YILREKQKPLLMG--------------------NKH  308 (449)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----------~~~~~~~~~~~~~--------------------~~~  308 (449)
                      +.+.++++..++.++..|+++++.++ .+.....          ....+........                    .+.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (485)
T TIGR00711       161 INVPIGIIVVVVAFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVVWEL  240 (485)
T ss_pred             hhhHHHHHHHHHHHHHcCCccccccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            98888777666666666654332221 1111100          0000000000000                    000


Q ss_pred             CCCCCchhHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHH
Q 013144          309 KPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLI  388 (449)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g  388 (449)
                      .++....+ .+++++|.++...+..++.....+....++|.|+++.+|+++.++++...+..++.+++.++.|++.||++
T Consensus       241 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~  319 (485)
T TIGR00711       241 TDDNPLVD-LRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKID  319 (485)
T ss_pred             cCCCCccC-HHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            11111122 26788999998888888888888888999999999989999999999999999999999999999999999


Q ss_pred             HhCCCchhhHHHHHHHHhHHHHHHHHHhh
Q 013144          389 QRGTSVTLTRKILQSIGFIAPGIALIGLT  417 (449)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (449)
                      +|         ..+..+....+++...+.
T Consensus       320 ~~---------~~~~~g~~~~~~~~~~~~  339 (485)
T TIGR00711       320 PR---------KLVTIGLILYAVGFYWRA  339 (485)
T ss_pred             cH---------HHHHHHHHHHHHHHHHHh
Confidence            88         344455555555554443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=100.00  E-value=7.1e-31  Score=252.65  Aligned_cols=273  Identities=22%  Similarity=0.238  Sum_probs=227.3

Q ss_pred             chhHHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHH
Q 013144           94 TSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVAL  173 (449)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~  173 (449)
                      .+++|..+.+.++..+..+++....++..|.+.+++|.++.+.+++.+.+.++..+++++.|+++||+|||+++..+.++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~   89 (406)
T PRK11551         10 SSRLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVAL   89 (406)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHH
Confidence            34778888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhC
Q 013144          174 WSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG  253 (449)
Q Consensus       174 ~~i~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~g  253 (449)
                      ..++.++++++  ++++.+++.|+++|++.+...+...+++.|++|+++|++++++...+..+|..+++.+++.+.+..+
T Consensus        90 ~~~~~~~~~~~--~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  167 (406)
T PRK11551         90 FGLFSLATAQA--WDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAA  167 (406)
T ss_pred             HHHHHHHHHHh--ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccC
Confidence            99999999988  9999999999999999999999999999999999999999999999999999999999998888889


Q ss_pred             chHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccCccccCCCCCCCCCchhHHHhhc---cccHHHHH
Q 013144          254 IFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLS---KMPTWSII  330 (449)
Q Consensus       254 wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~  330 (449)
                      ||+.|++.+++.++..++..+..||+|+..++..+++                  +++   ...+..++   .+..+...
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~------------------~~~---~~~~~~~~~~~~~~~~~~~  226 (406)
T PRK11551        168 WRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGK------------------QRA---PVLRALFGEGRATATLLLW  226 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcch------------------hhh---hhHHHHhhhhhhhHHHHHH
Confidence            9999999887766665555555666553211100000                  000   01111222   22334444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 013144          331 VANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR  390 (449)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~  390 (449)
                      +..++.....+....+.|.|+++ .|+++.+.+.......++.+++.++.|++.||+++|
T Consensus       227 ~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~  285 (406)
T PRK11551        227 ISYFFTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPR  285 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            45555556667778889999988 699999999999999999999999999999999987

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=100.00  E-value=3.6e-31  Score=238.62  Aligned_cols=271  Identities=17%  Similarity=0.207  Sum_probs=243.4

Q ss_pred             chhHHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHH
Q 013144           94 TSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVAL  173 (449)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~  173 (449)
                      ++.+++.+.+..+...+.++.+..++++.+.+.+++|+|+.|.+++.++..+...+..++.|.+.||||.|++..+++++
T Consensus         9 k~~~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l   88 (417)
T COG2223           9 KRIARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLL   88 (417)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHH
Confidence            44556778888888888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhcc-chhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhh
Q 013144          174 WSLATFLTPWAA-DTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQA  252 (449)
Q Consensus       174 ~~i~~~~~~~~~-~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~  252 (449)
                      ..+.++..+++. .++++++++.+.+.|++.| .+.....++++|+|++++|.++|+.. ..|+|..+...++..+....
T Consensus        89 ~~IP~~~~~~a~~~~~~~~ll~~gll~G~~Ga-sFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~  166 (417)
T COG2223          89 LLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGA-SFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAF  166 (417)
T ss_pred             HHHHHHHHHHHccCCchHHHHHHHHHHhcccc-eehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHH
Confidence            999999988872 2456799999999999855 58889999999999999999999999 99999999999999999998


Q ss_pred             C---chHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccCccccCCCCCCCCCc-hhHHHhhccccHHH
Q 013144          253 G---IFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVI-PPFRRLLSKMPTWS  328 (449)
Q Consensus       253 g---wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  328 (449)
                      |   |+....+..+..++..+..++...|.|+.+...+                        +.. .+++.+++++++|.
T Consensus       167 g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~------------------------~~~~~~~~~v~~~~~~W~  222 (417)
T COG2223         167 GFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVK------------------------PQLPAQLKAVFSNKDTWL  222 (417)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhcccc------------------------ccchhHHHHHhcCcchHH
Confidence            9   9999999988888888888888888776422111                        111 46778999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 013144          329 IIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR  390 (449)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~  390 (449)
                      +++.++..+.++.++..++|.|+++++|.++.++|.......+.+.+.++++|+++||+|.+
T Consensus       223 lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~  284 (417)
T COG2223         223 LSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGR  284 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccch
Confidence            99999999999999999999999999999999999999999999999999999999999988

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=100.00  E-value=1.2e-30  Score=249.22  Aligned_cols=265  Identities=18%  Similarity=0.238  Sum_probs=228.1

Q ss_pred             HHHHHHHHHHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHh
Q 013144          102 SMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLT  181 (449)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~  181 (449)
                      ..+....+..........+..|.+.+++|.++.+.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.+++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~   87 (385)
T TIGR00710         8 LLLGCLSILGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGL   87 (385)
T ss_pred             HHHHHHHHHHHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHH
Confidence            33444445566777788889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchHHHHHH
Q 013144          182 PWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIF  261 (449)
Q Consensus       182 ~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~  261 (449)
                      +++  ++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+....+|..+++.+++.+.+..|||+.|++.
T Consensus        88 ~~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~  165 (385)
T TIGR00710        88 ALS--NNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFL  165 (385)
T ss_pred             HHH--ccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence            998  999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccCccccCCCCCCCCCchhHHHhhccccHHHHHHHHHHHHHHHH
Q 013144          262 GLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFF  341 (449)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (449)
                      ++..++..+..++..||+++++++.+.                      +.....+++.+++|+++...+...+.....+
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (385)
T TIGR00710       166 SLAGILLSALIFFILPETLPYEARIQI----------------------STYFETFLLLLKSKMFWGYALIYGASFGGFF  223 (385)
T ss_pred             HHHHHHHHHHHHHhCCCCCCCcccCCH----------------------HHHHHHHHHHHcCchhHHHHHHHHHHHHHHH
Confidence            887777666666655554432211100                      0112345678889999888877777777777


Q ss_pred             HHHHHHHHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 013144          342 VILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR  390 (449)
Q Consensus       342 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~  390 (449)
                      ....+.|.++++.+|+++.+++.+.....++.+++.++.+++.||+++|
T Consensus       224 ~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~  272 (385)
T TIGR00710       224 AFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAK  272 (385)
T ss_pred             HHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence            8888899999888899999999999999999999999999999999988

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=100.00  E-value=1.9e-30  Score=245.52  Aligned_cols=267  Identities=12%  Similarity=0.110  Sum_probs=218.4

Q ss_pred             cchhHHHHHHHHHHHHHHHHHhHhhhhhhhhhhhh-hcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHH
Q 013144           93 ITSERVKVVSMLALALALCNADRVVMSVAIVPLSL-AHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGV  171 (449)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~  171 (449)
                      .++-.++.+.+..+..++.+..+..++++.+.+.+ ++|+|.+|.+++.+++.+++.+..++.|++.||+|.|+++.++.
T Consensus        28 ~~~~a~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~  107 (462)
T PRK15034         28 GKHIARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFST  107 (462)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHH
Confidence            34445678888899999999999999999999877 89999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhc---cchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHH
Q 013144          172 ALWSLATFLTPWA---ADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPIL  248 (449)
Q Consensus       172 ~~~~i~~~~~~~~---~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l  248 (449)
                      ++.++.+++.+++   ..++++.+++.|++.|++ |..++.....+++|+|+++||+++|+.....++|..++++++..+
T Consensus       108 ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~  186 (462)
T PRK15034        108 AILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLV  186 (462)
T ss_pred             HHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            9999999988864   126899999999999998 668899999999999999999999999877778887776666553


Q ss_pred             H-----h-------------hhCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccCccccCCCCCC
Q 013144          249 M-----S-------------QAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKP  310 (449)
Q Consensus       249 ~-----~-------------~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (449)
                      .     .             ..+||..+++..++.++..++.++..++.++.                            
T Consensus       187 i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~~----------------------------  238 (462)
T PRK15034        187 IFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIASS----------------------------  238 (462)
T ss_pred             HHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCcccc----------------------------
Confidence            3     2             23477777787777777776666665544321                            


Q ss_pred             CCCchhHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 013144          311 ATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR  390 (449)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~  390 (449)
                      +....+.++.+|+|++|.+++.+++.+..+.++..++|.|+++.+  +............+...+.++++|+++||+|++
T Consensus       239 ~~~~~~~~~vlk~~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~--~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~  316 (462)
T PRK15034        239 RASIADQLPVLQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKTQF--PDVNILRLAFFGPFIGAIARSVGGAISDKFGGV  316 (462)
T ss_pred             ccCHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCch
Confidence            111235568999999999999999999999999999999998854  333333333445577888899999999999988

>PRK10091 MFS transport protein AraJ; Provisional

Probab=100.00  E-value=1e-30  Score=248.99  Aligned_cols=261  Identities=18%  Similarity=0.184  Sum_probs=221.8

Q ss_pred             HHHHHHHHHHHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHH
Q 013144          101 VSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFL  180 (449)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~  180 (449)
                      +..+.+..+..........+.+|.+++++|.+..+.|++.+.+.+++.+++++.|+++||+|||+++.++.++.+++.++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l   84 (382)
T PRK10091          5 ILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAM   84 (382)
T ss_pred             HHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHH
Confidence            44556677777777788889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchHHHHH
Q 013144          181 TPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVI  260 (449)
Q Consensus       181 ~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~  260 (449)
                      ++++  ++++.+++.|+++|++.+...+....++.|++|+++|++++++...+..+|..+++++++.+.+..|||+.|++
T Consensus        85 ~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~  162 (382)
T PRK10091         85 FTLS--SSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLL  162 (382)
T ss_pred             HHHh--CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHH
Confidence            9999  99999999999999999998899999999999999999999999999999999999999999998999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccCccccCCCCCCCCCchhHHHhhccccHHHHHHHHHHHHHHH
Q 013144          261 FGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGF  340 (449)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (449)
                      .+++.++..+..++..||.+++.+. +                         .... .+.+|++..|...+..++.....
T Consensus       163 ~~~~~~~~~~~~~~~lp~~~~~~~~-~-------------------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~  215 (382)
T PRK10091        163 IAVFNIAVLASIYFWVPDIRDEAKG-G-------------------------LREQ-FHFLRSPAPWLIFAATMFGNAGV  215 (382)
T ss_pred             HHHHHHHHHHHHHHhCCCCCccccc-C-------------------------HHHH-HHHhcChHHHHHHHHHHHHHHHH
Confidence            8887776666555555654321110 0                         0011 24567777777666655555555


Q ss_pred             HHHHHHHHHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 013144          341 FVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR  390 (449)
Q Consensus       341 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~  390 (449)
                      +....+++.++.+.+|+++.+.+++.....++.++++++.+++.||+++|
T Consensus       216 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~  265 (382)
T PRK10091        216 FAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPL  265 (382)
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCch
Confidence            56667778888877899999999999999999999999999999999887

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=100.00  E-value=1.9e-30  Score=246.17  Aligned_cols=275  Identities=18%  Similarity=0.208  Sum_probs=219.8

Q ss_pred             HHHHHHHHHHHHhHhhhhhhhhh-hhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHH
Q 013144          102 SMLALALALCNADRVVMSVAIVP-LSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFL  180 (449)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~  180 (449)
                      ...++..+..+.......+..|. +++++|+++.+.+++.+++.++..+++++.|+++||+|||+.++++.++.+++.++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~   83 (366)
T TIGR00886         4 FFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLW   83 (366)
T ss_pred             HHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence            34666777778888889999995 99999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccch-hHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhh--------
Q 013144          181 TPWAADT-SLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQ--------  251 (449)
Q Consensus       181 ~~~~~~~-~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~--------  251 (449)
                      ++++  + +++.+++.|+++|++.+. .+...+++.|++|+++|++++++.....++|..+++.+++.+...        
T Consensus        84 ~~~~--~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~  160 (366)
T TIGR00886        84 AGLA--VQSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLP  160 (366)
T ss_pred             HHHH--hhhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccc
Confidence            9998  8 999999999999999664 566789999999999999999999988888888888888776653        


Q ss_pred             --hCchHHHH-HHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccCccccCCCCCCCCCchhHHHhhccccHHH
Q 013144          252 --AGIFGPFV-IFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWS  328 (449)
Q Consensus       252 --~gwr~~f~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (449)
                        .+||+.|+ ..+++..+..++.+...++.|+++++.++.+.      ..     .....++......++.+++|+++.
T Consensus       161 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~-----~~~~~~~~~~~~~~~~~~~~~~~~  229 (366)
T TIGR00886       161 AHLAWGWAFVIVPAGILLLPALLIFFVGADTPPGKPATGKLSF------KG-----ARWSVGTGALGDQLKVFRDRHTWI  229 (366)
T ss_pred             ccccccchhHHHHHHHHHHHHHHHHHhcccCCcccccchhccc------cc-----ccccccchhHHHHHHHHhccchhh
Confidence              38999994 44555554444445555554432211100000      00     000001111124567888999998


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 013144          329 IIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR  390 (449)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~  390 (449)
                      ..+..++.....+....+.|.|+++.+|+++.+++.+.....++.++++++.|++.||+++|
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~  291 (366)
T TIGR00886       230 LALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGA  291 (366)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccc
Confidence            88888877777888889999999998899999999998899999999999999999999987

>TIGR00891 2A0112 putative sialic acid transporter

Probab=100.00  E-value=1.6e-30  Score=250.12  Aligned_cols=293  Identities=15%  Similarity=0.144  Sum_probs=223.1

Q ss_pred             chhHHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHH
Q 013144           94 TSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVAL  173 (449)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~  173 (449)
                      ++++|+.+..++++++...++....++..|.+.+++|+++.+.+++.+.+.++..+++++.|+++||+|||++++++.++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~   86 (405)
T TIGR00891         7 TRAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVL   86 (405)
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            45678888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhC
Q 013144          174 WSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG  253 (449)
Q Consensus       174 ~~i~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~g  253 (449)
                      .+++.++++++  ++++.+++.|++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.+++.+.+..+
T Consensus        87 ~~~~~~~~~~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~  164 (405)
T TIGR00891        87 FSAGTLACGFA--PGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWG  164 (405)
T ss_pred             HHHHHHHHHHh--ccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999998  9999999999999999999999999999999999999999999999999999999999999988766


Q ss_pred             --chHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCH-HHHHHHHHhccCccccCCCCCCCCCchhHHHhhccc--cHHH
Q 013144          254 --IFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISK-YELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKM--PTWS  328 (449)
Q Consensus       254 --wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  328 (449)
                        ||+.|++.++..++..+ .....||+++..+..++ ++.....++..... ...+...+......++..+.+  .+..
T Consensus       165 ~~w~~~f~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (405)
T TIGR00891       165 DGWRALFFISILPIIFALW-LRKNIPEAEDWKEKHAGKALVRTMVDILYGGE-HRIANIVMTLAAAMVQSAGKRWPTFVY  242 (405)
T ss_pred             ccHHHHHHHHHHHHHHHHH-HHHhCCCChhHHHHhhhhhhhhhHHHHHhccc-hhhhhhhhhhhHHhhhhhhhhhHHHHH
Confidence              99999886655544433 33344554322111100 00000000000000 000000000011111111111  1222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 013144          329 IIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR  390 (449)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~  390 (449)
                      ..+...+..........++|.|+.+.+|++..+.+.+.....++.+++.++.+++.||++||
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~  304 (405)
T TIGR00891       243 LVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRR  304 (405)
T ss_pred             HHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence            33333444445556677899999888899999999999999999999999999999999988

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=100.00  E-value=1.6e-30  Score=249.91  Aligned_cols=274  Identities=13%  Similarity=0.083  Sum_probs=233.2

Q ss_pred             chhHHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHH
Q 013144           94 TSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVAL  173 (449)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~  173 (449)
                      +++.+.....+.+..+...+....+.+.+|.+.+++|.++.+.++..+.+.+++.+++++.|+++||+|||++++++..+
T Consensus         8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~   87 (406)
T PRK15402          8 GRQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAF   87 (406)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence            45667777888888888888888889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhC
Q 013144          174 WSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG  253 (449)
Q Consensus       174 ~~i~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~g  253 (449)
                      .+++.++++++  ++++.+++.|+++|++.+...+...+++.|++|+++|++.+++......+|..+||.+++.+.+..+
T Consensus        88 ~~~~~~~~~~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~  165 (406)
T PRK15402         88 FILTCLAILLA--QSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLP  165 (406)
T ss_pred             HHHHHHHHHHH--ccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            99999999888  9999999999999999998889999999999999999999999998889999999999999999899


Q ss_pred             chHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccCccccCCCCCCCCCchhHHHhhccccHHHHHHHH
Q 013144          254 IFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVAN  333 (449)
Q Consensus       254 wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (449)
                      ||+.|++.++..++..+..++..||++++.++..                     +.++...+++.++++|.++...+..
T Consensus       166 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~  224 (406)
T PRK15402        166 WRGMFVLFAALAALSFFGLWRAMPETAGRVGEKL---------------------SLKELGRDYKLVLKNRRFVAGALAL  224 (406)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhCCCCCccccccc---------------------cHHHHHHHHHHHHcCcHHHHHHHHH
Confidence            9999999888877766655555555433211100                     0011223566888999998888777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 013144          334 AMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR  390 (449)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~  390 (449)
                      ++..........+.|.++.+.+|+++.+.+.......++.+++.++.+++.||+++|
T Consensus       225 ~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~  281 (406)
T PRK15402        225 GLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLR  281 (406)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence            777666667777889998888899999888887777788899999999999999887

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=100.00  E-value=2.7e-30  Score=246.72  Aligned_cols=262  Identities=13%  Similarity=0.193  Sum_probs=216.3

Q ss_pred             HHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHH
Q 013144           97 RVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSL  176 (449)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i  176 (449)
                      .|.....++.+.+..... ...++++|.+++|+|+|..+.+++.+.+.+++.+++++.|+++||+|||+++..+.++.++
T Consensus         8 ~~~~~~~~~~~~~~~~~~-~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~   86 (393)
T PRK09705          8 NFMLLVLVLIGLNMRPLL-TSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAV   86 (393)
T ss_pred             HHHHHHHHHHHHHcchhh-hccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHH
Confidence            344444444444443332 6778999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhccchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhh-Cch
Q 013144          177 ATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQA-GIF  255 (449)
Q Consensus       177 ~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~-gwr  255 (449)
                      +.++++++  ++++.++++|+++|++.+...+....++.|++| ++|+++++++..+..+|..+|+.+++.+.++. +||
T Consensus        87 ~~~~~~~a--~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~  163 (393)
T PRK09705         87 GALMRELY--PQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWY  163 (393)
T ss_pred             HHHHHHHC--cchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence            99999999  999999999999999999999999999999997 88999999999999999999999999998875 899


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccCccccCCCCCCCCCchhHHHhhccccHHHHHHHHHH
Q 013144          256 GPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAM  335 (449)
Q Consensus       256 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (449)
                      +.+.+.++..++..+..++..++.|++++                     +  ++.    ..++.+++++.|...+..++
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~--~~~----~~~~~l~~~~~~~l~~~~~~  216 (393)
T PRK09705        164 QTLAWWALPAVVALFAWWWQSAREVASSH---------------------K--TTT----TPVRVVFTPRAWTLGVYFGL  216 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCcccc---------------------C--CCc----CCcccccCHhHHHHHHHHHH
Confidence            99877666655444333333222221100                     0  000    11245567888887777777


Q ss_pred             HHHHHHHHHHHHHHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 013144          336 HSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR  390 (449)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~  390 (449)
                      ....++....+.|.|+++ +|++..+++.......++.++++++.+++.||+++|
T Consensus       217 ~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~  270 (393)
T PRK09705        217 INGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRR  270 (393)
T ss_pred             HHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccch
Confidence            778888899999999988 699999999999999999999999999999999987

>PRK03699 putative transporter; Provisional

Probab=100.00  E-value=3e-30  Score=246.81  Aligned_cols=267  Identities=15%  Similarity=0.180  Sum_probs=222.5

Q ss_pred             hHHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHH
Q 013144           96 ERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWS  175 (449)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~  175 (449)
                      ++++.....++..+.........++.+|++.+++|+|+.+.+++.+.+.+++.+++++.|++.||+|||+++..+.++.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~   83 (394)
T PRK03699          4 NRIKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMI   83 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            35566777788888888888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhccchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHh-hhCc
Q 013144          176 LATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS-QAGI  254 (449)
Q Consensus       176 i~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~-~~gw  254 (449)
                      ++.++++++  ++++.+++.|+++|++.|...+...+++.|++|+++|+++++.......+|..++|.+.+.+.. ..||
T Consensus        84 i~~~l~~~~--~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw  161 (394)
T PRK03699         84 LAVAGLMFS--HSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEW  161 (394)
T ss_pred             HHHHHHHHc--chHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccH
Confidence            999999998  9999999999999999999899999999999999999999999999999999999999888764 5799


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccCccccCCCCCCCCCchhHHHhhccccHHHHHHHHH
Q 013144          255 FGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANA  334 (449)
Q Consensus       255 r~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (449)
                      |+.|++.+++.++..++.++.  +.|+..++.++                 +  +++.    .+. ..++.++...+..+
T Consensus       162 ~~~f~~~~~~~~~~~~~~~~~--~~p~~~~~~~~-----------------~--~~~~----~~~-~~~~~~~~~~~~~~  215 (394)
T PRK03699        162 YWVYACIGLVYVAIFILTLFS--EFPALGKHAPK-----------------A--DKPV----AKE-KWGIGVLFLAIAAL  215 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc--CCccccccCcc-----------------c--cCcc----ccc-cCChHHHHHHHHHH
Confidence            999999888776655544332  22221110000                 0  0000    001 12456677777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 013144          335 MHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR  390 (449)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~  390 (449)
                      +.....+.+..|+|.|+++.+|+++.+++.+.+...++..+++++.++++||+++|
T Consensus       216 ~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~  271 (394)
T PRK03699        216 LYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQ  271 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchh
Confidence            77777788889999999888899999999999999999999999999999999988

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=100.00  E-value=2e-30  Score=246.94  Aligned_cols=260  Identities=18%  Similarity=0.207  Sum_probs=214.9

Q ss_pred             HHHHHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhccc
Q 013144          107 ALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAAD  186 (449)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~  186 (449)
                      ...........+++..|.+.+++|+++.+.|++.+++.++..+++++.|+++||+|||+++.++.++.+++.++++++  
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~--   88 (377)
T TIGR00890        11 IMCFTSGYVYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIA--   88 (377)
T ss_pred             HHHHHhhHHhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHH--
Confidence            333344446678899999999999999999999999999999999999999999999999999999999999999999  


Q ss_pred             hhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchHHHHHHHHHHH
Q 013144          187 TSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGF  266 (449)
Q Consensus       187 ~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~  266 (449)
                      ++++.++++|++.|++.+...+.....+.|++| ++|+++.++...+.++|..+++++.+.+.+..|||+.|++.+++.+
T Consensus        89 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~  167 (377)
T TIGR00890        89 DSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFL  167 (377)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            999999999999999999888888899999996 6899999999999999998887777777788899999999998887


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccCccccCCCCCCCCCchhHHHhhccccHHHHHHHHHHHHHHHHHHHHH
Q 013144          267 LWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSW  346 (449)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (449)
                      +..+..++..++++++..+.+                    .+.+......++.+++|.++...+..++..........+
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (377)
T TIGR00890       168 LVIVLGAFLIGYPPGQLIKTN--------------------IEVSVKDYTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGL  227 (377)
T ss_pred             HHHHHHHHheecCchhccccC--------------------cccchhhhhHHHHHcCccHHHHHHHHHHHhHHHHHHHHH
Confidence            777666666554433211100                    000011124567888999888777777666666666677


Q ss_pred             HHHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 013144          347 MPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR  390 (449)
Q Consensus       347 ~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~  390 (449)
                      .+.|.++ +|.+..+.+.......++.++++++.|++.||++||
T Consensus       228 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~  270 (377)
T TIGR00890       228 YKPYGQS-LGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQ  270 (377)
T ss_pred             HHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            7777766 688888889999999999999999999999999988

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=100.00  E-value=2.5e-30  Score=253.91  Aligned_cols=278  Identities=19%  Similarity=0.176  Sum_probs=209.2

Q ss_pred             HHHHHHHHHHHHHHHHhHhhhhhhhhhhhhhcCCCchh-hHH-----HHHHHHHHHHHhhccchhhhhhcCCchHHHHHH
Q 013144           98 VKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSF-SGI-----VQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGV  171 (449)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~g~-----~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~  171 (449)
                      +..+....++.+++++|...++...|.+.++++.+..+ .++     +.++..++..++++++|+++||+|||+++.+++
T Consensus        15 ~~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~   94 (490)
T PRK10642         15 RKAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITI   94 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            34566778899999999999999999999998644322 222     247788999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhccchhHHH--------HHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHH
Q 013144          172 ALWSLATFLTPWAADTSLLA--------LLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLV  243 (449)
Q Consensus       172 ~~~~i~~~~~~~~~~~~~~~--------l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~  243 (449)
                      +++++++++++++  +|++.        ++++|+++|++.|..++...+++.|++|+++||++.++...+..+|..+|+.
T Consensus        95 ~l~~i~~~~~a~~--~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~  172 (490)
T PRK10642         95 VIMSISTFCIGLI--PSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAG  172 (490)
T ss_pred             HHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999  88864        8999999999999999999999999999999999999999988889888887


Q ss_pred             HHHHHHh--------hhCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccCccccCCCCCCCCCch
Q 013144          244 LSPILMS--------QAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIP  315 (449)
Q Consensus       244 l~~~l~~--------~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (449)
                      +...+..        .+|||+.|++.++++++. ++.....||+|+..+.     .++..+...+     .  ..+....
T Consensus       173 ~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~-~~~~~~~~esp~~~~~-----~~~~~~~~~~-----~--~~~~~~~  239 (490)
T PRK10642        173 VVVLISTIVGEANFLDWGWRIPFFIALPLGIIG-LYLRHALEETPAFQQH-----VDKLEQGDRE-----G--LQDGPKV  239 (490)
T ss_pred             HHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHH-HHHHHcCCCChhHHHH-----HHhhhhhccc-----c--ccccccC
Confidence            7655432        579999999977655543 3334445665542110     0000000000     0  0001122


Q ss_pred             hHHHhhcc-ccHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 013144          316 PFRRLLSK-MPTWS-IIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR  390 (449)
Q Consensus       316 ~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~  390 (449)
                      ++++++++ ++.+. .....++....++.+..|+|.|+++.+|++..+.++......++.+++.++.|+++||+|||
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr  316 (490)
T PRK10642        240 SFKEIATKHWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRR  316 (490)
T ss_pred             CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence            45566653 22222 22333445667788889999999887899888888777778888899999999999999998

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.98  E-value=8.7e-32  Score=244.31  Aligned_cols=282  Identities=19%  Similarity=0.238  Sum_probs=240.1

Q ss_pred             chhHHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHH
Q 013144           94 TSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVAL  173 (449)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~  173 (449)
                      .+..+..+.++++..+++.+|.+.+....+.+++.+|++++..|++.+.+.+.+++++|+.|+++|||.||+++.+|..+
T Consensus        28 ~~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~i  107 (493)
T KOG1330|consen   28 MKSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFI  107 (493)
T ss_pred             cccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHH
Confidence            34456788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhC
Q 013144          174 WSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG  253 (449)
Q Consensus       174 ~~i~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~g  253 (449)
                      +.++.++++++  ..||+++++|.+.|+|.+...|+++++++|.+|..+|++++++++.+.++|..+|.+.+..+.+..+
T Consensus       108 W~~Av~~~~fs--~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~  185 (493)
T KOG1330|consen  108 WTLAVFASGFS--NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF  185 (493)
T ss_pred             HHHHHHHHHHH--HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCcc
Confidence            99999999999  9999999999999999999999999999999999999999999999999999999999999988766


Q ss_pred             -chHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccCccccCCCCCCCCCchhHHHhhccccHHHHHHH
Q 013144          254 -IFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVA  332 (449)
Q Consensus       254 -wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (449)
                       |||.|+..++++++..++.+++.+|++++.+...+.+.             .......+.+.+.+.+.+++.+....+.
T Consensus       186 ~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~~~~~-------------~~~~~~ts~~kDl~~l~~~~v~v~~sl~  252 (493)
T KOG1330|consen  186 WWRWAFRGSAVLGVIVGLLVFLFVREPERGARDEVDGEN-------------KMVKPFTSVWKDLKVLAKIKVFVLSSLG  252 (493)
T ss_pred             ceEEEEEeehHHHHHHHHHHHhhccCcccccccccccCC-------------cCCCCccchHHHHHHHHccCceeeehHH
Confidence             99999999999999999888888777654221111100             0112233455677778888887777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHh---hCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 013144          333 NAMHSWGFFVILSWMPIYFNFV---YHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR  390 (449)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~---~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~  390 (449)
                      .....+...++..|.|.++...   .|++..+..++..+...++.+|.+++|.++||+.++
T Consensus       253 ~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~  313 (493)
T KOG1330|consen  253 IIAAQFVIGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRI  313 (493)
T ss_pred             HHHHHHhccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHh
Confidence            7777777767777777666543   356666666777888888999999999999998764

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.98  E-value=1.3e-29  Score=246.48  Aligned_cols=291  Identities=18%  Similarity=0.228  Sum_probs=225.0

Q ss_pred             chhHHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHH
Q 013144           94 TSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVAL  173 (449)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~  173 (449)
                      ++++|.++...++.....+.+...++...|.+.++ |++..+.+++.+.+.++..+++++.|+++||+|||++++++.++
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~  102 (452)
T PRK11273         24 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL  102 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHH
Confidence            44566666666677777777777788888999888 99999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhcc--chhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhH-hHHHHHHHHHh
Q 013144          174 WSLATFLTPWAA--DTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNA-IGLVLSPILMS  250 (449)
Q Consensus       174 ~~i~~~~~~~~~--~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~-~g~~l~~~l~~  250 (449)
                      .+++.+++++.+  ..+++.+++.|++.|++.|...+.....+.|++|+++|+++++++..+.++|.. .+++++..+..
T Consensus       103 ~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~  182 (452)
T PRK11273        103 AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAW  182 (452)
T ss_pred             HHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            999998887751  137888999999999999998888888999999999999999999999999864 45555444444


Q ss_pred             hhCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccCccccCCCCCCCCCchhH-HHhhccccHHHH
Q 013144          251 QAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPF-RRLLSKMPTWSI  329 (449)
Q Consensus       251 ~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  329 (449)
                      ..|||+.|++.+++.++..++.++..||+|++....++++.+.  +... . ....+.++.+....+ +.++|++.+|..
T Consensus       183 ~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (452)
T PRK11273        183 FNDWHAALYMPAFAAILVALFAFAMMRDTPQSCGLPPIEEYKN--DYPD-D-YNEKHEQELTAKQIFMQYVLPNKLLWYI  258 (452)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCChhhhhh--cccc-c-cccccCCCccHHHHHHHHHHcChHHHHH
Confidence            4599999999888877766666666677665432222111110  0000 0 000000111111112 346788999998


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHH
Q 013144          330 IVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQ  389 (449)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~  389 (449)
                      .+..++.....+....++|.|+++..|++..+++.......++.+++.++.|+++||+++
T Consensus       259 ~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~  318 (452)
T PRK11273        259 AIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFR  318 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            888888888888889999999999889998899988888889999999999999999954

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.98  E-value=6.4e-30  Score=247.60  Aligned_cols=280  Identities=15%  Similarity=0.164  Sum_probs=221.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHH
Q 013144           95 SERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALW  174 (449)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~  174 (449)
                      +.++..+..+.+.++...++.....+..|.+.+++|+++.+.+++.+++.++..+++++.|+++||+|||+++.++.++.
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~   93 (426)
T PRK12307         14 RPQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAY   93 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence            45566677888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhccchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCc
Q 013144          175 SLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGI  254 (449)
Q Consensus       175 ~i~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gw  254 (449)
                      +++.++++++  ++++.++++|+++|++.|...+....++.|++|+++|+++.++...+..+|.++++.+.+.+.+..||
T Consensus        94 ~~~~~~~~~~--~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w  171 (426)
T PRK12307         94 SVGTGLSGLA--SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGW  171 (426)
T ss_pred             HHHHHHHHHH--hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCH
Confidence            9999999999  99999999999999999999999999999999999999999999999999999999999999888999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccCccccCCCCCCCCCchhHHHhhccccHHHHHHHHH
Q 013144          255 FGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANA  334 (449)
Q Consensus       255 r~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (449)
                      |+.|++.++..++. +......||+++..      + +.. +...    ...+...+....++++++++|.++.......
T Consensus       172 ~~~f~i~~~~~~~~-~~~~~~~p~~~~~~------~-~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (426)
T PRK12307        172 RAAFFVGLLPVLLV-IYIRARAPESKEWE------E-AKL-SGKG----KHSQSAWSVFSLSMKGLFNRAQFPLTLCVFI  238 (426)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHCCCChHHH------H-hhh-hccc----cccccchhhhhHHHHHHHhhchHHHHHHHHH
Confidence            99998854433222 21111122221100      0 000 0000    0000011111235678888887765443322


Q ss_pred             ---HHHHHHHHHHHHHHHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 013144          335 ---MHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR  390 (449)
Q Consensus       335 ---~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~  390 (449)
                         ......+.+..++|.|+++ .|+++.+.+.......++.+++.++.|++.||++||
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~  296 (426)
T PRK12307        239 VLFSIFGANWPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLK  296 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence               2223334467789999988 599998999988899999999999999999999988

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.98  E-value=1e-29  Score=244.02  Aligned_cols=264  Identities=16%  Similarity=0.113  Sum_probs=222.3

Q ss_pred             HHHHHHHHHHHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHH
Q 013144          101 VSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFL  180 (449)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~  180 (449)
                      ...+.+..+...+......+.+|.+.+++|.+..+.++..+++.+++.++++++|+++||+|||++++.+.++.+++.++
T Consensus        18 ~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~   97 (413)
T PRK15403         18 PMALILYDFAAYLTTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAA   97 (413)
T ss_pred             HHHHHHHHHHHHHHHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHH
Confidence            34445556667778888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchHHHHH
Q 013144          181 TPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVI  260 (449)
Q Consensus       181 ~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~  260 (449)
                      ++++  ++++.++++|+++|++.+...+...+++.|++|+++|++++++......+|..+||++++.+.+..|||+.|++
T Consensus        98 ~~~a--~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~  175 (413)
T PRK15403         98 TLFT--TSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAI  175 (413)
T ss_pred             HHHc--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            9999  99999999999999999877778888999999999999999999999999999999999999988999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccCccccCCCCCCCCCchhHHHhhccccHHHHHHHHHHHHHHH
Q 013144          261 FGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGF  340 (449)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (449)
                      .+++.++..+..++..||+++++++..                     +.+....++++++|||.+|...+..++.....
T Consensus       176 ~~~~~~i~~~~~~~~lp~~~~~~~~~~---------------------~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~  234 (413)
T PRK15403        176 IAVMGLIAFVGLLLAMPETVKRGAVPF---------------------SAKSVLRDFRNVFRNRLFLTGAATLSLSYIPM  234 (413)
T ss_pred             HHHHHHHHHHHHHHhCCCCccccCCCC---------------------ChHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence            888877766655555666543211100                     00111236678899999999888888888888


Q ss_pred             HHHHHHHHHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHH
Q 013144          341 FVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDML  387 (449)
Q Consensus       341 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~  387 (449)
                      +.+..+.|.++++.+|+++.+.++.......+..++..+.+++.++.
T Consensus       235 ~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~  281 (413)
T PRK15403        235 MSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDP  281 (413)
T ss_pred             HHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            88888899999998899999999988777777777777777665443

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.98  E-value=1.8e-29  Score=239.27  Aligned_cols=289  Identities=14%  Similarity=0.127  Sum_probs=231.7

Q ss_pred             HHHHHHHHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhh
Q 013144          104 LALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPW  183 (449)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~  183 (449)
                      +..+.++..+......+.+|.+..+++.++.+.+++.+++.++..+++++.|+++||+|||++++.+.++.+++.++.++
T Consensus         4 l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~   83 (365)
T TIGR00900         4 LFAAQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPF   83 (365)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHH
Confidence            44566677777778888899999999999999999999999999999999999999999999999999999998888887


Q ss_pred             ccch-----hHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchHHH
Q 013144          184 AADT-----SLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPF  258 (449)
Q Consensus       184 ~~~~-----~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f  258 (449)
                      .  +     +++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.++||.+++.+.+..|||+.|
T Consensus        84 ~--~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~  161 (365)
T TIGR00900        84 V--ALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAI  161 (365)
T ss_pred             H--HHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            7  6     99999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccCccccCCCCCCCCCchhHHHhhccccHHHHHHHHHHHHH
Q 013144          259 VIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSW  338 (449)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (449)
                      ++.++..++..+..+...++++++.+..+.++ +.                .++....++.++|+|.++...+..++...
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (365)
T TIGR00900       162 WVDAVGFAISALLIVSVRIPELAASEIQALSN-AV----------------LRDTREGIKFVLKNPLLRTLLLLALLFNL  224 (365)
T ss_pred             HHHHHHHHHHHHHHHhcccccCCCccccccch-hH----------------HHHHHhHHHHHHcCcHHHHHHHHHHHHHH
Confidence            98877666555444433322221111110000 00                00112245678889998888887777777


Q ss_pred             HHHHHH-HHHHHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHhHHHHHHHHHhh
Q 013144          339 GFFVIL-SWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLT  417 (449)
Q Consensus       339 ~~~~~~-~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (449)
                      ...... .+.|.|.++.+|.++.+.+.......++.+++.++.+++.||.+++         ..+..+....++..+.+.
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~  295 (365)
T TIGR00900       225 VFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRM---------ALMTGAIFVIGLAILVVG  295 (365)
T ss_pred             HHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh---------HHHHHHHHHHHHHHHHHH
Confidence            776666 8889999887899999999999999999999999999999999887         334444444555555444


Q ss_pred             ccc
Q 013144          418 AAK  420 (449)
Q Consensus       418 ~~~  420 (449)
                      ..+
T Consensus       296 ~~~  298 (365)
T TIGR00900       296 LTP  298 (365)
T ss_pred             hhc
Confidence            443

>PRK10133 L-fucose transporter; Provisional

Probab=99.97  E-value=4.7e-29  Score=240.57  Aligned_cols=271  Identities=15%  Similarity=0.156  Sum_probs=215.8

Q ss_pred             HHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHH
Q 013144           97 RVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSL  176 (449)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i  176 (449)
                      ....+..+.+..+...+......+..|.+++++|+++.+.|++.+.+.+++.+++++.|++.||+|||+++.++.+++++
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~  103 (438)
T PRK10133         24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYAL  103 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence            34556667777788888888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHh---hhccchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHh---
Q 013144          177 ATFLT---PWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS---  250 (449)
Q Consensus       177 ~~~~~---~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~---  250 (449)
                      +.+++   .++  ++++.++++|+++|+|.|...+..+.++.|+.|+++|+..+++.+..+.+|..+|+.+++.+..   
T Consensus       104 ~~~l~~~~~~a--~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~  181 (438)
T PRK10133        104 GAALFWPAAEI--MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNV  181 (438)
T ss_pred             HHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            99875   456  8999999999999999999999999999998877777778999999999999999999876541   


Q ss_pred             ---------------h--------hCchHHHHHHHHHH-HHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccCccccCC
Q 013144          251 ---------------Q--------AGIFGPFVIFGLSG-FLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGN  306 (449)
Q Consensus       251 ---------------~--------~gwr~~f~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (449)
                                     .        .+||++|+....+. ++..++.....|+.+++++                     .
T Consensus       182 ~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~~~---------------------~  240 (438)
T PRK10133        182 PHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNH---------------------S  240 (438)
T ss_pred             cccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccc---------------------c
Confidence                           0        25666665433332 2322222222232111100                     0


Q ss_pred             CCCCCCCchhHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHH
Q 013144          307 KHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYF-NFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSD  385 (449)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d  385 (449)
                      +.+..+.....++++++|.++...+..++..........|.+.|+ ++.+|+++.++++.+....++.++++++++++.|
T Consensus       241 ~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~  320 (438)
T PRK10133        241 DAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLIS  320 (438)
T ss_pred             cccccchhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            000111223456888999988877777777777787888899885 5667999999999999999999999999999999


Q ss_pred             HHHHh
Q 013144          386 MLIQR  390 (449)
Q Consensus       386 r~g~~  390 (449)
                      |+++|
T Consensus       321 r~g~~  325 (438)
T PRK10133        321 RFAPH  325 (438)
T ss_pred             HcCHH
Confidence            99988

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.97  E-value=2.8e-30  Score=246.02  Aligned_cols=279  Identities=19%  Similarity=0.236  Sum_probs=229.7

Q ss_pred             HHHHHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhccc
Q 013144          107 ALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAAD  186 (449)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~  186 (449)
                      .++..+++...++...|.+.+++|.+..+.+++.+++.++..++.++.|+++||+|||++++++.++.+++.++++++  
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--   80 (379)
T TIGR00881         3 GYAAYYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFS--   80 (379)
T ss_pred             hhhHHHHhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHh--
Confidence            456777888899999999999999999999999999999999999999999999999999999999999999999999  


Q ss_pred             hhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHH-HHHHHHHhhhCchHHHHHHHHHH
Q 013144          187 TSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGL-VLSPILMSQAGIFGPFVIFGLSG  265 (449)
Q Consensus       187 ~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~-~l~~~l~~~~gwr~~f~~~~~~~  265 (449)
                      ++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..+++ .+++.+.+..+||+.|++.+++.
T Consensus        81 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (379)
T TIGR00881        81 TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIA  160 (379)
T ss_pred             hhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999 57777777889999999988887


Q ss_pred             HHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccCccccCCCCCCCCCchhHHHhhccccHHHHHHHHHHHHHHHHHHHH
Q 013144          266 FLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILS  345 (449)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (449)
                      ++..++.++..++++++.+..+.++...   +........++++.+......+.++++|.++...+..++..........
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (379)
T TIGR00881       161 IIVSLICFLLLRDSPQSCGLPPAEEMPN---EEPDGDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVRTGILD  237 (379)
T ss_pred             HHHHHHHheeeCCCccccccCccccCcc---cccccccccccccccchHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence            7766666666666554322111110000   0000000001111112223456788999999998888888888888999


Q ss_pred             HHHHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 013144          346 WMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR  390 (449)
Q Consensus       346 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~  390 (449)
                      +.|.|+++.+|+++.+++.......++.+++.++.+++.||..++
T Consensus       238 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~  282 (379)
T TIGR00881       238 WSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNG  282 (379)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCC
Confidence            999999988899999999999999999999999999999987544

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.97  E-value=4.9e-30  Score=244.86  Aligned_cols=293  Identities=19%  Similarity=0.238  Sum_probs=252.4

Q ss_pred             ccchhHHHHHHHHHHHHHHHHHhHhhhh-hhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHH
Q 013144           92 FITSERVKVVSMLALALALCNADRVVMS-VAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWG  170 (449)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~  170 (449)
                      ...+-.+.++..++..++....+...++ ..+..+.+|++....+.+++.+++.++++++.+++|.+.||++..+.+...
T Consensus        38 l~~K~dl~i~~~~~~~y~~~~~d~~si~~a~l~g~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~  117 (495)
T KOG2533|consen   38 LLRKLDLFILPFLCYLYFHAYLDKSSIVNASLSGLKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVS  117 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcchhcchhHHHcCCccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHH
Confidence            3444556777778888888888766554 445557899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHH-
Q 013144          171 VALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILM-  249 (449)
Q Consensus       171 ~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~-  249 (449)
                      .+++++..++.+..  +|++.+++.|++.|+..+..+|....+++.|+.+++|+..++++.+..++|.++|.+++..+. 
T Consensus       118 ~~~w~~~~~~~~~~--~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~  195 (495)
T KOG2533|consen  118 GILWGLFGFLTAAV--HSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFK  195 (495)
T ss_pred             HHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhh
Confidence            99999988888777  999999999999999999999999999999999999999999999999999999999998864 


Q ss_pred             -----hhhCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccCccccCCCCCCCCCchhHHHhhccc
Q 013144          250 -----SQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKM  324 (449)
Q Consensus       250 -----~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (449)
                           ...||||.|++.+++.++..++.++..|+.|++....+++|+....++.+.....  ..+++..+..+++.+++|
T Consensus       196 ~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~~~~~~~~~~~--~~~~~~~~~~~~~a~~dp  273 (495)
T KOG2533|consen  196 LNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEKELVVERLRESPSG--GIENKFKWKGFKEALKDP  273 (495)
T ss_pred             hcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChhhccccchHHHHHHHHHHHhccCC--CcccccCHHHHHHHHhch
Confidence                 3468999999999999999999999999999988777777654443332221111  111115667888999999


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHH
Q 013144          325 PTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLI  388 (449)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g  388 (449)
                      .+|...+..++.....+++.+|+|.|+++..|++..++..+..+..++++++.+++|+++||++
T Consensus       274 ~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~  337 (495)
T KOG2533|consen  274 GVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLK  337 (495)
T ss_pred             hHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999966799999999999999999999999999999953

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.97  E-value=9.2e-31  Score=246.91  Aligned_cols=269  Identities=26%  Similarity=0.398  Sum_probs=221.5

Q ss_pred             HHHHHHHHHhHhhhhhhhh-hhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhh
Q 013144          105 ALALALCNADRVVMSVAIV-PLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPW  183 (449)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~  183 (449)
                      +++.++..++.....+..| .+.+++|.++.+.+++.+++.++..+++++.|+++||+|||+++.++.++.+++.++..+
T Consensus         2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~   81 (352)
T PF07690_consen    2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAF   81 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhh
Confidence            4567777888888889999 899999999999999999999999999999999999999999999999999999777777


Q ss_pred             ccchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchHHHHHHHH
Q 013144          184 AADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGL  263 (449)
Q Consensus       184 ~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~  263 (449)
                      +  ++++.+++.|++.|++.+...+...+++.|++|+++|++++++......+|.+++|.+++.+.+..|||+.|++.++
T Consensus        82 ~--~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~  159 (352)
T PF07690_consen   82 A--SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAI  159 (352)
T ss_dssp             H--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHH
T ss_pred             h--hhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccc
Confidence            6  77779999999999999999999999999999999999999999999999999999999999988899999999999


Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccCccccCCCCCCCCCch-hHHHhhccccHHHHHHHHHHHHHHHHH
Q 013144          264 SGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIP-PFRRLLSKMPTWSIIVANAMHSWGFFV  342 (449)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (449)
                      +.++..++.....++++++++..++++.+               ++.+.... .++.++++|.+|...+..+........
T Consensus       160 ~~~~~~il~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (352)
T PF07690_consen  160 LSLIAAILFILFLPEPPPPRERESPKESE---------------SKKPKPLKPGFKSLFKNPVLWILLIAFFLFFFVFSG  224 (352)
T ss_dssp             HHHHHHHHHHCCC---STTTT--SSTTTT-----------------HHHCCCH-CTHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhHhhhhhhcccccccccccccc---------------cccccccccccccccccchhhhhhhhhhHHHHHHHH
Confidence            88887765444554444333221111100               00111112 256778888887666666666667888


Q ss_pred             HHHHHHHHHHHhhCCc-ccchhhHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 013144          343 ILSWMPIYFNFVYHID-LRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR  390 (449)
Q Consensus       343 ~~~~~~~~~~~~~g~s-~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~  390 (449)
                      ...+.|.|+.+.+|++ ..+.+.......++.+++.++.+++.||++++
T Consensus       225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  273 (352)
T PF07690_consen  225 FSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRR  273 (352)
T ss_dssp             HHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             hhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH
Confidence            9999999988888999 78999999999999999999999999998876

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.97  E-value=3.9e-29  Score=239.31  Aligned_cols=263  Identities=16%  Similarity=0.115  Sum_probs=217.8

Q ss_pred             HHHHHHHHHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhh
Q 013144          103 MLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTP  182 (449)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~  182 (449)
                      +.....+..........+.+|.+.+++|.++.+.++..+.+.++..+++++.|+++||+|||+.++.+.++.+++.+++.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~   86 (392)
T PRK10473          7 CSFALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCS   86 (392)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHH
Confidence            33344444555555666889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchHHHHHHH
Q 013144          183 WAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFG  262 (449)
Q Consensus       183 ~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~  262 (449)
                      ++  ++++.+++.|+++|++.+...+...+++.|++|+++|++++++.+....+|..++|.+++.+.+..|||+.|++.+
T Consensus        87 ~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~  164 (392)
T PRK10473         87 LA--ETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMA  164 (392)
T ss_pred             Hh--CcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHH
Confidence            88  8999999999999999999999999999999999999999999999999999999999999888889999999988


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccCccccCCCCCCCCCchhHHHhhccccHHHHHHHHHHHHHHHHH
Q 013144          263 LSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFV  342 (449)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (449)
                      ++.++..++.++..||+++++++.                       +.......++.+++++++...+...+.......
T Consensus       165 ~~~~i~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (392)
T PRK10473        165 AMGILVLLLSLFILKETRPARAPA-----------------------ASSKPRENSESLLNRFFLSRLVITTLSVTVILT  221 (392)
T ss_pred             HHHHHHHHHHHHHcCCCCCcccCC-----------------------ccchHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence            887776666656666544321110                       001112344677888877666655555555556


Q ss_pred             HHHHHHHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 013144          343 ILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR  390 (449)
Q Consensus       343 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~  390 (449)
                      +..+.|.++++.+|+++.+.+......+++.+++.++.+++.||+++|
T Consensus       222 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~  269 (392)
T PRK10473        222 FVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPR  269 (392)
T ss_pred             HHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence            667778888887899999999999999999999999999999999988

>PRK10504 putative transporter; Provisional

Probab=99.97  E-value=3.8e-29  Score=245.23  Aligned_cols=288  Identities=14%  Similarity=0.113  Sum_probs=233.1

Q ss_pred             HHHHHHHHHHHHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHH
Q 013144          100 VVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATF  179 (449)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~  179 (449)
                      .+.+++++.++..++...+.+..|.+.+++|.++.+.+++.+.+.++..++.+++|+++||+|||++++.+.++.+++.+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~   90 (471)
T PRK10504         11 QLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSL   90 (471)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Confidence            35566777788888888899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhccchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchHHHH
Q 013144          180 LTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFV  259 (449)
Q Consensus       180 ~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~  259 (449)
                      +++++  ++++.+++.|+++|++.+...+...+++.|++|+++|+++.++.....++|..+||.+++.+.+..|||+.|+
T Consensus        91 ~~~~~--~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~  168 (471)
T PRK10504         91 FCALS--GTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFL  168 (471)
T ss_pred             HHHHh--CCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHH
Confidence            98888  8999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHH----------HHhccC-cc------------------ccCCCCCC
Q 013144          260 IFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYI----------LREKQK-PL------------------LMGNKHKP  310 (449)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~-~~------------------~~~~~~~~  310 (449)
                      +......+..+......|+.+.+.++.+.......          .+.... ..                  ...+++..
T Consensus       169 ~~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (471)
T PRK10504        169 INIPVGIIGAIATLMLMPNYTMQTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHARNN  248 (471)
T ss_pred             HHHHHHHHHHHHHHHhCCCccccCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            98877776666666665654433332222111000          000000 00                  00001111


Q ss_pred             CCCchhHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 013144          311 ATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR  390 (449)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~  390 (449)
                      +....+. +++|||.++...+..++..........+.|.|++..+|.++.++++...+..++.+++.++.+++.||+++|
T Consensus       249 ~~~~~~~-~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~  327 (471)
T PRK10504        249 NRALFSL-KLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYR  327 (471)
T ss_pred             CCCccCH-HHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch
Confidence            1222233 578999998888888888877777778899999987899999999999888888888889999999999988

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.97  E-value=1.4e-29  Score=245.87  Aligned_cols=287  Identities=17%  Similarity=0.157  Sum_probs=221.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHH
Q 013144           95 SERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALW  174 (449)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~  174 (449)
                      .++|.++..+.+...........++...+.+.+++|.+..+.+++.+.+.++..++.++.|+++||+|||++++.+.++.
T Consensus        15 ~~~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~   94 (455)
T TIGR00892        15 GWGWVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLA   94 (455)
T ss_pred             CcchHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHH
Confidence            44677777777777666666677888899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhccchhHHHHHH-HHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhC
Q 013144          175 SLATFLTPWAADTSLLALLA-MRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG  253 (449)
Q Consensus       175 ~i~~~~~~~~~~~~~~~l~~-~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~g  253 (449)
                      +++.++++++  ++++.+++ .|+++|++.+...+...+++.++++ ++|+++.++...+..+|..++|++++.+.+.+|
T Consensus        95 ~~~~~~~~~~--~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~g  171 (455)
T TIGR00892        95 SLGMILASFS--SNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFG  171 (455)
T ss_pred             HHHHHHHHHh--hhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhC
Confidence            9999999998  89998865 5799999999877778888999995 899999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccCcc-ccCCCCCCCCCchhHHHhhccccHHHHHHH
Q 013144          254 IFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPL-LMGNKHKPATVIPPFRRLLSKMPTWSIIVA  332 (449)
Q Consensus       254 wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (449)
                      ||+.|++.+++.++..+..++..++.+.......+++ +.......... ......++.....++ +++++|.++...+.
T Consensus       172 wr~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  249 (455)
T TIGR00892       172 WRGSFLILGGLLLHCCVCGALMRPVGPSQRVSKSKSK-EGLPPDGSTKKLSKKSTAEKINRFLDF-SLFTHRGFLVYLSG  249 (455)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhCCCCccccccccccc-ccCCCCCccccccccchhhhhhhhcch-HHhcCchHHHHHHH
Confidence            9999999988877665555554443221110000000 00000000000 000000000011122 57788999988888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHH
Q 013144          333 NAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDML  387 (449)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~  387 (449)
                      .++.....+....++|.|+++ .|++..+++.+.++.+++.++++++.|++.||.
T Consensus       250 ~~l~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~  303 (455)
T TIGR00892       250 NVIMFLGFFAPIIFLVPYAKD-KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLK  303 (455)
T ss_pred             HHHHHHHccchHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            887777878888899999987 699999999999999999999999999999973

>PRK09952 shikimate transporter; Provisional

Probab=99.97  E-value=4.4e-29  Score=241.60  Aligned_cols=276  Identities=14%  Similarity=0.080  Sum_probs=206.0

Q ss_pred             cchhHHHHHHHHHHHHHHHHHhHhhhhhhhhh-hhhhc--CCCchhhHHHH-----HHHHHHHHHhhccchhhhhhcCCc
Q 013144           93 ITSERVKVVSMLALALALCNADRVVMSVAIVP-LSLAH--GWSRSFSGIVQ-----SSFLWGYLVSPIAGGTLVDYYGGK  164 (449)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~--~~~~~~~g~~~-----s~~~~~~~~~~~~~G~l~dr~Grr  164 (449)
                      +..+++..+....++.+.+++|...++...+. +.+++  +.++. .+++.     ++..++..+++++.|+++||+|||
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr   94 (438)
T PRK09952         16 SLSRARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRK   94 (438)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccH
Confidence            33445667778888999999999999988775 45555  66665 45554     345566788999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHhhhccchhHH--------HHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhh
Q 013144          165 IIMAWGVALWSLATFLTPWAADTSLL--------ALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTS  236 (449)
Q Consensus       165 ~~l~~~~~~~~i~~~~~~~~~~~~~~--------~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~  236 (449)
                      ++++++.+++++++++++++  ++++        .++++|+++|++.|..++....++.|++|+++|++..+....+..+
T Consensus        95 ~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~  172 (438)
T PRK09952         95 RMLMLTVWMMGIATALIGLL--PSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGV  172 (438)
T ss_pred             HHHHHHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence            99999999999999999999  8876        5889999999999999999999999999999999999999999999


Q ss_pred             hhHhHHHHHHHHHh--------hhCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccCccccCCCC
Q 013144          237 GNAIGLVLSPILMS--------QAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKH  308 (449)
Q Consensus       237 G~~~g~~l~~~l~~--------~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (449)
                      |.+++..+...+..        .+|||+.|++.+++.++. +......||+|+..      +..   ++.       ++ 
T Consensus       173 G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~-~~l~~~~~es~~~~------~~~---~~~-------~~-  234 (438)
T PRK09952        173 GLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIA-LWVRNGMEESAEFE------QQQ---HEQ-------AA-  234 (438)
T ss_pred             HHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHH-HHHHHhCCCChhHH------HHH---hhc-------cc-
Confidence            99999887776653        479999999887765442 22222233333210      000   000       00 


Q ss_pred             CCCCCchhHHHhhccccHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHH
Q 013144          309 KPATVIPPFRRLLSKMPTWSIIV-ANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDML  387 (449)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~  387 (449)
                       .+......+.++++|+.+...+ ..++..+..+....|.|.|+++.+|++...........++..+++.++.|+++||+
T Consensus       235 -~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~  313 (438)
T PRK09952        235 -AKKRIPVIEALLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRF  313 (438)
T ss_pred             -ccccCCHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence             0001112334667777666544 45555667777889999999888888877655555566777788889999999999


Q ss_pred             HHh
Q 013144          388 IQR  390 (449)
Q Consensus       388 g~~  390 (449)
                      +||
T Consensus       314 grr  316 (438)
T PRK09952        314 GRR  316 (438)
T ss_pred             Cch
Confidence            988

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.97  E-value=2.9e-29  Score=239.09  Aligned_cols=256  Identities=16%  Similarity=0.211  Sum_probs=219.8

Q ss_pred             HhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhccchhHHHH
Q 013144          113 ADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLAL  192 (449)
Q Consensus       113 ~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~l  192 (449)
                      +....+.+.+|.+.+++|+++.+.+++.+++.++..++.++.|+++||+|||+++..+.++.+++.+++.+.  ++++.+
T Consensus         5 ~~~~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~--~~~~~~   82 (377)
T PRK11102          5 LAIDMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALA--QTIDQL   82 (377)
T ss_pred             hHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHH--ccHHHH
Confidence            344567788999999999999999999999999999999999999999999999999999999999999998  999999


Q ss_pred             HHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHH
Q 013144          193 LAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVW  272 (449)
Q Consensus       193 ~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~  272 (449)
                      ++.|+++|++.+...+...+++.|++|+++|++++++......+|..++|.+++.+.+..|||+.|++.+++.++..+..
T Consensus        83 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  162 (377)
T PRK11102         83 IYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALV  162 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999888877766666


Q ss_pred             HHhcCCCCCCCCCCCHHHHHHHHHhccCccccCCCCCCCCCchhHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013144          273 LSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFN  352 (449)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (449)
                      .+..||+++++++.+                    .+.+....++++.+++|.++...+..++.....+.+..+.|.++.
T Consensus       163 ~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (377)
T PRK11102        163 FFFIPETLPKERRQP--------------------FHLRTTIRNFASLFRHKRVLGYMLASGFSFAGMFSFLTAGPFVYI  222 (377)
T ss_pred             HHhCCccCcccccCC--------------------CChHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence            555565433211100                    000111235567888888888777777777777777788888888


Q ss_pred             HhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 013144          353 FVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR  390 (449)
Q Consensus       353 ~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~  390 (449)
                      +.+|+++.+.+.+.....++.+++.++.+++.||+|+|
T Consensus       223 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~  260 (377)
T PRK11102        223 ELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGAL  260 (377)
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH
Confidence            87899999999999999999999999999999999988

>TIGR00895 2A0115 benzoate transport

Probab=99.97  E-value=3.8e-29  Score=239.98  Aligned_cols=293  Identities=22%  Similarity=0.272  Sum_probs=226.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHH
Q 013144           95 SERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALW  174 (449)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~  174 (449)
                      +++|..+....+..+..+++.....+..|.+.+++|.++.+.+++.+.+.++..++.++.|+++||+|||+.+..+.++.
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~   92 (398)
T TIGR00895        13 RYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLF   92 (398)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHH
Confidence            34566667777777888888888889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhccchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCc
Q 013144          175 SLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGI  254 (449)
Q Consensus       175 ~i~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gw  254 (449)
                      +++.++.++.  ++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..+++.+++.+.+..||
T Consensus        93 ~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~  170 (398)
T TIGR00895        93 SVFTLLCALA--TNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGW  170 (398)
T ss_pred             HHHHHHHHHc--cchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccc
Confidence            9999999888  99999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHh----ccCccc--cCCCCCC-CCCchhHHHhhcc---c
Q 013144          255 FGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILRE----KQKPLL--MGNKHKP-ATVIPPFRRLLSK---M  324 (449)
Q Consensus       255 r~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~--~~~~~~~-~~~~~~~~~~~~~---~  324 (449)
                      ++.|++.+++.++..++.+...|++++...+.++++..+..++    ...+..  ..+++.+ +......+.++++   +
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (398)
T TIGR00895       171 RSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKALFQGKTAR  250 (398)
T ss_pred             eeehhhhhhHHHHHHHHHHHhCCCCChHHHhcCHHHHHHHHHHHHHhccccccccccccccccchhhHHHHHHhcchhHH
Confidence            9999998766666666666666666542211122211111111    000000  0000011 1111122223332   2


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 013144          325 PTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR  390 (449)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~  390 (449)
                      ..+...+..++.....+....+.|.+..+ +|+++.+++.......++.+++.++.+++.||+++|
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  315 (398)
T TIGR00895       251 ITVLLWLLYFMLLVGVYFLTNWLPKLMVE-LGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPR  315 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchH
Confidence            34444555556666677777888855544 799999999999999999999999999999999877

>PRK15075 citrate-proton symporter; Provisional

Probab=99.97  E-value=1.5e-28  Score=237.98  Aligned_cols=269  Identities=15%  Similarity=0.124  Sum_probs=204.9

Q ss_pred             HHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhhcCCCchhhHHH-HHHH-----HHHHHHhhccchhhhhhcCCchHHHHH
Q 013144           97 RVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIV-QSSF-----LWGYLVSPIAGGTLVDYYGGKIIMAWG  170 (449)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~-~s~~-----~~~~~~~~~~~G~l~dr~Grr~~l~~~  170 (449)
                      |++....++++.++.++|...++...|.+.++++.++.+.+.+ .+..     .++..+++++.|+++||+|||++++.+
T Consensus        13 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~   92 (434)
T PRK15075         13 KARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVT   92 (434)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHH
Confidence            4556888899999999999999999999999999988876544 3332     222346889999999999999999999


Q ss_pred             HHHHHHHHHHhhhccchhHH--------HHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHH
Q 013144          171 VALWSLATFLTPWAADTSLL--------ALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGL  242 (449)
Q Consensus       171 ~~~~~i~~~~~~~~~~~~~~--------~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~  242 (449)
                      .+++++++++++++  ++++        .++++|+++|++.|...+....+++|++|+++|++++++...+.++|..+++
T Consensus        93 ~~~~~~~~~l~~~~--~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~  170 (434)
T PRK15075         93 LSIMASGTLLIAFV--PGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAA  170 (434)
T ss_pred             HHHHHHHHHHHHhC--CcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHH
Confidence            99999999999999  8876        4689999999999999999999999999999999999999999999988888


Q ss_pred             HHHHHHH--------hhhCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccCccccCCCCCCCCCc
Q 013144          243 VLSPILM--------SQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVI  314 (449)
Q Consensus       243 ~l~~~l~--------~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (449)
                      .+++.+.        +.+|||++|++.++...+.    ++.....|+..     +..+   ++        ++   .+..
T Consensus       171 ~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~----~~~~~~~~e~~-----~~~~---~~--------~~---~~~~  227 (434)
T PRK15075        171 LLGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPFI----FLIRRSLEETE-----EFLA---RK--------HR---PSMR  227 (434)
T ss_pred             HHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH----HHHHHhcCCCH-----HHHH---hh--------hc---cccc
Confidence            8887763        4679999998754432211    11111111110     0000   00        00   0111


Q ss_pred             hhHHHhhccccHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 013144          315 PPFRRLLSKMPTWSI-IVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR  390 (449)
Q Consensus       315 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~  390 (449)
                      ..++...++++.+.. .+..++.....+....|.|.|+++.+|++..++++...+..++.+++.++.|+++||++||
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r  304 (434)
T PRK15075        228 EIFRSLAANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRR  304 (434)
T ss_pred             cHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence            223344555554443 3334445566777889999999988899998888888888899999999999999999988

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.97  E-value=4.1e-28  Score=232.42  Aligned_cols=268  Identities=18%  Similarity=0.205  Sum_probs=222.2

Q ss_pred             HHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHH
Q 013144           97 RVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSL  176 (449)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i  176 (449)
                      .++.+.++.+......+......+.+|.+.+++|.++.+.+++.+.+.++..++++++|+++||+|||+++.++.++..+
T Consensus         6 ~~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~   85 (394)
T PRK11652          6 NVNLLFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFIL   85 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHH
Confidence            44555555566666677777888889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhccchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchH
Q 013144          177 ATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFG  256 (449)
Q Consensus       177 ~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~  256 (449)
                      +.+++.++  ++++.+++.|++.|++.+...+....+..|.+++++|+++.++...+..+|..++|.+++.+.+..|||+
T Consensus        86 ~~~~~~~~--~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~  163 (394)
T PRK11652         86 GTLVALFA--HSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRA  163 (394)
T ss_pred             HHHHHHHH--ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHH
Confidence            99999888  9999999999999999998888888999999999999999999999999999999999999999899999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccCccccCCCCCCCCCchhHHHhhccccHHHHHHHHHHH
Q 013144          257 PFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMH  336 (449)
Q Consensus       257 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (449)
                      .|++.++..++..+...+..||+++..++.                        ++....+++.+++|.++...+..+..
T Consensus       164 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (394)
T PRK11652        164 CYLFLLLLGAGVTFSMARWMPETRPADARR------------------------TRVLASYRTLLSNRRFNCYLLMLIGT  219 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCccCccccch------------------------hHHHHHHHHHHcChHHHHHHHHHHHH
Confidence            999988777665555555556544321110                        00123566788888888766666666


Q ss_pred             HHHHHHHHHHHHHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 013144          337 SWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR  390 (449)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~  390 (449)
                      ......+..+.+.++++.+|+++.+.++......++.+++..+.+++.||.+++
T Consensus       220 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~  273 (394)
T PRK11652        220 LAGIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL  273 (394)
T ss_pred             HHHHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666677788899888899999999888887788888888888888888743

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.97  E-value=3.6e-28  Score=235.66  Aligned_cols=290  Identities=19%  Similarity=0.231  Sum_probs=226.4

Q ss_pred             hHHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHH
Q 013144           96 ERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWS  175 (449)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~  175 (449)
                      .++..+..+.+.+...+.+...+....|.+.+ +|+++.+.+++.+++.++..++.++.|+++||+|||+++.++.++.+
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~  102 (438)
T TIGR00712        24 LRWQVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSA  102 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHH
Confidence            35666677777777777777777878888876 59999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhcc--chhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHh-hh
Q 013144          176 LATFLTPWAA--DTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS-QA  252 (449)
Q Consensus       176 i~~~~~~~~~--~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~-~~  252 (449)
                      ++.+++++.+  .++++.+.+.|++.|++.|..++.....+.|++|+++|++++++.+.+..+|..+++.+.+.+.+ ..
T Consensus       103 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~  182 (438)
T TIGR00712       103 AVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFN  182 (438)
T ss_pred             HHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhh
Confidence            9988876641  14678888999999999999899999999999999999999999999999999999888776444 57


Q ss_pred             CchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccCccccCCCCCCCCCchh-HHHhhccccHHHHHH
Q 013144          253 GIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPP-FRRLLSKMPTWSIIV  331 (449)
Q Consensus       253 gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  331 (449)
                      |||+.|++.++++++..++.++..||+|++.+..+.++.+.  +.....  .++.+.+.+.... .+.++|++.+|...+
T Consensus       183 ~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (438)
T TIGR00712       183 DWHAALYFPAICAIIVALFAFAMMRDTPQSCGLPPIEEYRN--DYPDDY--NEKAEQELTAKEIFMQYVLPNKLLWYIAI  258 (438)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCCchhccc--cccccc--ccccccccchHHHHHHHHccCchHHHHHH
Confidence            99999999988887766666666676654321111110000  000000  0000011111111 234788999999888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 013144          332 ANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR  390 (449)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~  390 (449)
                      ..++.....+....++|.|+++..|+++.++++...+..++++++.+++|++.||++++
T Consensus       259 ~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~  317 (438)
T TIGR00712       259 ANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKG  317 (438)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            88887878888889999999998899999999999999999999999999999999654

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.97  E-value=1.3e-29  Score=253.18  Aligned_cols=290  Identities=17%  Similarity=0.184  Sum_probs=227.4

Q ss_pred             HHHHHHHHHHHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHH
Q 013144          101 VSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFL  180 (449)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~  180 (449)
                      ++.+++..+.........+.+++.+.++|+++..+.|++.+.+.++++++.++.|++.||+|||+.+.++++++++++++
T Consensus        35 ~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll  114 (633)
T TIGR00805        35 SLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFL  114 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHH
Confidence            34455566777777888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcc-------------------------------------------------chhHHHHHHHHHHHhhhhhhhhhHHH
Q 013144          181 TPWAA-------------------------------------------------DTSLLALLAMRAVVGLAEGVALPAMN  211 (449)
Q Consensus       181 ~~~~~-------------------------------------------------~~~~~~l~~~r~l~G~g~g~~~~~~~  211 (449)
                      +++..                                                 ...+..++++|+++|+|.+..++...
T Consensus       115 ~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~  194 (633)
T TIGR00805       115 LSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGI  194 (633)
T ss_pred             HhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCc
Confidence            87751                                                 00256788999999999999999999


Q ss_pred             HHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhh----------------------CchHHHHHHHHHHHHHH
Q 013144          212 NMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQA----------------------GIFGPFVIFGLSGFLWV  269 (449)
Q Consensus       212 ~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~----------------------gwr~~f~~~~~~~~~~~  269 (449)
                      +++.|++|+++|+++++++.....+|.++|+++++++.+.+                      +|+..|++.+++.++..
T Consensus       195 ~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~  274 (633)
T TIGR00805       195 SYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTS  274 (633)
T ss_pred             hhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999988643                      26777888888877766


Q ss_pred             HHHHHhcCCCCCCCCCCCHHHHHHHHHhc-cCccccCCCCCCCCCchhHHHhhccccHHHHHHHHHHHHHHHHHHHHHHH
Q 013144          270 LVWLSATSSTPDRHPQISKYELEYILREK-QKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMP  348 (449)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (449)
                      +.++++.++.|+...+.+.+..+...... ............+.....+++++++|.++...+..++.....+++.+|+|
T Consensus       275 v~l~~~p~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~~~lP  354 (633)
T TIGR00805       275 IPFFFFPKALPKEGKRVNVDVHETEKLEKSEDKSRKKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFNGYITFLP  354 (633)
T ss_pred             HHHHhCccccCCcccccchhhhhhhcccccccccchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            65555444444322111110000000000 00000000000112234577899999999999999999999999999999


Q ss_pred             HHHHHhhCCcccchhhHhhHHHH-HHHHHHHHHHHHHHHHHHh
Q 013144          349 IYFNFVYHIDLRQASWFSAVPWS-VMAFTGYLGGLLSDMLIQR  390 (449)
Q Consensus       349 ~~~~~~~g~s~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~g~~  390 (449)
                      .|+++.+|+++.+++++.....+ +.+++.+++|+++||++.+
T Consensus       355 ~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~  397 (633)
T TIGR00805       355 KYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLN  397 (633)
T ss_pred             HHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeeccc
Confidence            99999999999999999887766 5688999999999999855

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.97  E-value=1.8e-28  Score=241.16  Aligned_cols=305  Identities=17%  Similarity=0.185  Sum_probs=215.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhhc--------CCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchH
Q 013144           95 SERVKVVSMLALALALCNADRVVMSVAIVPLSLAH--------GWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKII  166 (449)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~  166 (449)
                      +...+...+..++.+..+++...+++..+.+++++        +.++.+.+++.+.+.++..++++++|+++||+|||++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~   87 (479)
T PRK10077          8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS   87 (479)
T ss_pred             hHHHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence            34556677777888999999999999999888877        8889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhcc----------chhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhh
Q 013144          167 MAWGVALWSLATFLTPWAA----------DTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTS  236 (449)
Q Consensus       167 l~~~~~~~~i~~~~~~~~~----------~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~  236 (449)
                      ++++.+++.++.+++++..          .+.++.++++|+++|++.|...+...++++|++|+++|++++++.+.+..+
T Consensus        88 ~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~  167 (479)
T PRK10077         88 LKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIF  167 (479)
T ss_pred             HHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHH
Confidence            9999999999988876530          133677899999999999999999999999999999999999999999999


Q ss_pred             hhHhHHHHHHHHH--------hhhCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCC-CCCHHHHHHHHHhccCccccCCC
Q 013144          237 GNAIGLVLSPILM--------SQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHP-QISKYELEYILREKQKPLLMGNK  307 (449)
Q Consensus       237 G~~~g~~l~~~l~--------~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  307 (449)
                      |.++++.+++.+.        +..|||+.|++.++..++..+. .+..||+|+... +.+.++.+...++....      
T Consensus       168 G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~-~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~------  240 (479)
T PRK10077        168 GQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLML-LYFVPETPRYLMSRGKQEQAEGILRKIMGN------  240 (479)
T ss_pred             HHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHH-HHcCCCCcHHHHHcCCHHHHHHHHHHHcCC------
Confidence            9999988877654        3468999999988777776544 445677664311 11122211111111100      


Q ss_pred             CCCCCCchhHHHhhc-----cccHH-----H----HHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccchhhHhhHHHHHH
Q 013144          308 HKPATVIPPFRRLLS-----KMPTW-----S----IIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVM  373 (449)
Q Consensus       308 ~~~~~~~~~~~~~~~-----~~~~~-----~----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~  373 (449)
                      .+.+....+.++.++     .+..+     .    .....+......+...++.|.++++ .|.+.....+.....++..
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~-~g~~~~~~~~~~~~~~~~~  319 (479)
T PRK10077        241 TLATQALQEIKHSLDHGRKTGGKLLMFGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKT-LGASTDIALLQTIIVGVIN  319 (479)
T ss_pred             hhHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHH-cCCCCchHHHHHHHHHHHH
Confidence            000000001111110     00100     0    0111112222233445666777766 6888777777777888889


Q ss_pred             HHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHhHHHHHHHHHh
Q 013144          374 AFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGL  416 (449)
Q Consensus       374 ~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (449)
                      +++.++.++++||+|||         .++..+.+..+++.+.+
T Consensus       320 ~i~~~~~g~l~dr~g~r---------~~~i~~~~~~~v~~~~l  353 (479)
T PRK10077        320 LTFTVLAIMTVDKFGRK---------PLQIIGALGMAIGMFSL  353 (479)
T ss_pred             HHHHHHHHHHHHHhcCh---------HHHHHhHHHHHHHHHHH
Confidence            99999999999999988         44455555555544443

>PRK11043 putative transporter; Provisional

Probab=99.97  E-value=1e-27  Score=230.21  Aligned_cols=259  Identities=20%  Similarity=0.174  Sum_probs=216.7

Q ss_pred             HHHHHHHHHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhh
Q 013144          103 MLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTP  182 (449)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~  182 (449)
                      .+.+...+.++....+.+..|.+.+++|.++.+.+++.+++.++..++++++|+++||+|||+++..+.++..++.++++
T Consensus        10 ~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~   89 (401)
T PRK11043         10 YLAGLSMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGML   89 (401)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHH
Confidence            33333455566677888889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchHHHHHHH
Q 013144          183 WAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFG  262 (449)
Q Consensus       183 ~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~  262 (449)
                      ++  ++++.+++.|+++|++.+...+...+++.|++|++++++..+.......+|..++|.+++.+.+..|||+.|++.+
T Consensus        90 ~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~  167 (401)
T PRK11043         90 WV--ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLF  167 (401)
T ss_pred             Hh--cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence            98  9999999999999999988888888999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccCccccCCCCCCCCCchhHHHhhccccHHHHHHHHHHHHHHHHH
Q 013144          263 LSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFV  342 (449)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (449)
                      ++.++..+..++..+++++++ +                         ++...++++++|+|+++...+...+.....+.
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~-~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (401)
T PRK11043        168 AITLLLILPTLRLKPSKKARK-Q-------------------------SQDALTFKQLLKSKTYLGNVLIFAACSAAFFA  221 (401)
T ss_pred             HHHHHHHHHHHHcCCCCCccc-c-------------------------chHHHHHHHHHcChhHHHHHHHHHHHHHHHHH
Confidence            887776665554433322110 0                         00113566788888887766666666666677


Q ss_pred             HHHHHHHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 013144          343 ILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR  390 (449)
Q Consensus       343 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~  390 (449)
                      +..+.|.++++ +|+++.+.++......++.+++.++.+++.||+++|
T Consensus       222 ~~~~~p~~~~~-~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~  268 (401)
T PRK11043        222 WLTGSPFILEQ-MGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGE  268 (401)
T ss_pred             HHHHhHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH
Confidence            77889998877 699999999888888888899999999999999877

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.97  E-value=1.4e-28  Score=241.93  Aligned_cols=294  Identities=17%  Similarity=0.118  Sum_probs=210.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhhcCCC--------chhhHHHHHHHHHHHHHhhccchhhhhhcCCchH
Q 013144           95 SERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWS--------RSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKII  166 (449)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~  166 (449)
                      ++.+....++.++.+...++.....+..+.+.++++.+        ..+.+++.+++.++..++++++|+++||+|||++
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~  103 (481)
T TIGR00879        24 WKVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKS  103 (481)
T ss_pred             HHHHHHHHHHHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHH
Confidence            34445555566666777888888999999998888777        8999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHH
Q 013144          167 MAWGVALWSLATFLTPWAA-DTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLS  245 (449)
Q Consensus       167 l~~~~~~~~i~~~~~~~~~-~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~  245 (449)
                      ++++.++..++.+++.+.. ..+++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.++++.++
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~  183 (481)
T TIGR00879       104 LLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFG  183 (481)
T ss_pred             HHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            9999999999999885541 145678999999999999999999999999999999999999999999999999999999


Q ss_pred             ---HHHHhhhCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCC-CCCHHHHHHHHHhccCccc----------------cC
Q 013144          246 ---PILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHP-QISKYELEYILREKQKPLL----------------MG  305 (449)
Q Consensus       246 ---~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----------------~~  305 (449)
                         ..+.+..|||+.|++.++..++..+ ..+..||+|+... +.+.++......+......                ..
T Consensus       184 ~~~~~~~~~~~w~~~f~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (481)
T TIGR00879       184 SGKVSLNNTLGWRIPLGLQLIPAGLLFL-GLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSI  262 (481)
T ss_pred             HHhhcCCCCccHHHHHHHHHHHHHHHHH-HHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHH
Confidence               6655677999999996665555444 3444566553210 1111111111100000000                00


Q ss_pred             CCCCCCCCchhHHHhhc---cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHH
Q 013144          306 NKHKPATVIPPFRRLLS---KMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGL  382 (449)
Q Consensus       306 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~  382 (449)
                      +.+..+..+..+.+..+   .+.++...+..+...........+.|.++++ .|++..+.+....+..++.+++.++.++
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~  341 (481)
T TIGR00879       263 EKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFEN-AGVSTDHAFLVSIIVGAVNFAFTFVAIF  341 (481)
T ss_pred             HHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHH-cCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence            00000111112222221   2223333333333333344556677777766 6999888888888999999999999999


Q ss_pred             HHHHHHHh
Q 013144          383 LSDMLIQR  390 (449)
Q Consensus       383 l~dr~g~~  390 (449)
                      +.||++||
T Consensus       342 l~d~~~~~  349 (481)
T TIGR00879       342 LVDRFGRR  349 (481)
T ss_pred             HHHHhcch
Confidence            99999988

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.97  E-value=2.1e-27  Score=227.06  Aligned_cols=289  Identities=17%  Similarity=0.161  Sum_probs=223.6

Q ss_pred             HHHHHHHHHHHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHH
Q 013144          101 VSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFL  180 (449)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~  180 (449)
                      +.+++...+..++.....++..|.+++++|+++.+.|++.+.+.+++.+++++.|++.||+|||+++.++.++++++.++
T Consensus         5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l   84 (410)
T TIGR00885         5 FALITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFL   84 (410)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence            45666777777888888899999999999999999999999999999999999999999999999999999999999988


Q ss_pred             hhhcc-chhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhh--------
Q 013144          181 TPWAA-DTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQ--------  251 (449)
Q Consensus       181 ~~~~~-~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~--------  251 (449)
                      +..+. .++++.+++.|++.|+|.|...+..+.++.+..|+++|++.+++.+...++|..+||.+++.+...        
T Consensus        85 ~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~  164 (410)
T TIGR00885        85 FWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQD  164 (410)
T ss_pred             HHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhh
Confidence            64431 168999999999999999999999999999999999999999999999999999999999887532        


Q ss_pred             ------------------hCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccCccccCCCCCCCCC
Q 013144          252 ------------------AGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATV  313 (449)
Q Consensus       252 ------------------~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (449)
                                        .+||++|++.+++.++..++..+. +. |+.++. +                  +  ++.+.
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~-~~-p~~~~~-~------------------~--~~~~~  221 (410)
T TIGR00885       165 VLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLT-KM-PALNHS-D------------------A--KQISF  221 (410)
T ss_pred             hhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cC-CCCCcc-c------------------c--ccccc
Confidence                              469999999888776655444322 21 111100 0                  0  00111


Q ss_pred             chhHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-CCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhCC
Q 013144          314 IPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVY-HIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGT  392 (449)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~  392 (449)
                      ..+.++++|+|+++...+..++.........++++.|.++.. +.+...++........+..+|+++++++.||+++|  
T Consensus       222 ~~~~~~~~~~~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~--  299 (410)
T TIGR00885       222 SASLSRLARIRHYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAH--  299 (410)
T ss_pred             hhhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH--
Confidence            124457888999988888888877777788899999997632 33444445566666677899999999999999887  


Q ss_pred             CchhhHHHHHHHHhHHHHHHHHHhhcccc
Q 013144          393 SVTLTRKILQSIGFIAPGIALIGLTAAKS  421 (449)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  421 (449)
                             ..+.+..+...+..+.....++
T Consensus       300 -------~~l~i~~~~~~~~~ll~~~~~~  321 (410)
T TIGR00885       300 -------KVLMAYAIIGMALCLGSIFAGG  321 (410)
T ss_pred             -------HHHHHHHHHHHHHHHHHHHcCC
Confidence                   2333444444444444444444

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.97  E-value=1.4e-27  Score=235.35  Aligned_cols=293  Identities=12%  Similarity=0.054  Sum_probs=211.9

Q ss_pred             chhHHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhhc-----CCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHH
Q 013144           94 TSERVKVVSMLALALALCNADRVVMSVAIVPLSLAH-----GWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMA  168 (449)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~  168 (449)
                      .+.++..+.++.++.+..+++....+.+.+.+..++     +.+..+.+++.+.+.++..++++++|+++||+|||+++.
T Consensus        11 ~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~   90 (502)
T TIGR00887        11 GWQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYG   90 (502)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence            456677888889999999999999999988887642     355667899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhccchh------HHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHH
Q 013144          169 WGVALWSLATFLTPWAADTS------LLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGL  242 (449)
Q Consensus       169 ~~~~~~~i~~~~~~~~~~~~------~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~  242 (449)
                      +++++..++.++++++  ++      ++.++++|+++|++.|...+....++.|++|+++|++++++.+....+|.++++
T Consensus        91 ~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~  168 (502)
T TIGR00887        91 MELIIMIIATVASGLS--PGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGA  168 (502)
T ss_pred             HHHHHHHHHHHHHHHc--cCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999998887  54      789999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHh-----------------------hhCchHHHHHHHHHHHHHHHHHHHhcCCCCCCC---CCCCHHHHHHHHH
Q 013144          243 VLSPILMS-----------------------QAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRH---PQISKYELEYILR  296 (449)
Q Consensus       243 ~l~~~l~~-----------------------~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~  296 (449)
                      .++..+..                       ..+||+.|.+.++.+++..+ ..+..||+|+..   .+.+++..+...+
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~-~~~~lpESpr~l~~~~~~~~~a~~~~~~  247 (502)
T TIGR00887       169 IVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALY-FRLTIPETPRYTADVAKDVEQAASDMSA  247 (502)
T ss_pred             HHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHH-HHHhCCCCHHHHHHhCcchHHHHHHHHH
Confidence            98876542                       13799999887776665444 445678888742   2211111111111


Q ss_pred             hccCc--cccCC----CCCCCCCchhHHHhhcc---ccH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccchh
Q 013144          297 EKQKP--LLMGN----KHKPATVIPPFRRLLSK---MPT----WSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQAS  363 (449)
Q Consensus       297 ~~~~~--~~~~~----~~~~~~~~~~~~~~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~  363 (449)
                      .....  ...++    +++++....++++++++   ++.    +.+....+.....+++...+.|.++++ .|++..+++
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~-~G~~~~~~~  326 (502)
T TIGR00887       248 VLQVKIEAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSA-IGYSPPAAT  326 (502)
T ss_pred             HhccccccCcccccchhccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHH-HcCCCCccc
Confidence            11100  00000    00011112356666653   222    222233344445566777788999976 588765332


Q ss_pred             h------------HhhHHHHHHHHHHHHHHHHHHHHHHh
Q 013144          364 W------------FSAVPWSVMAFTGYLGGLLSDMLIQR  390 (449)
Q Consensus       364 ~------------~~~~~~~~~~~~~~~~g~l~dr~g~~  390 (449)
                      .            ......++.+++.++.++++||+|||
T Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR  365 (502)
T TIGR00887       327 NNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRK  365 (502)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcch
Confidence            1            12333445677888999999999998

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.97  E-value=1.4e-27  Score=227.80  Aligned_cols=265  Identities=15%  Similarity=0.109  Sum_probs=205.2

Q ss_pred             HHHHHHHHHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhh
Q 013144          103 MLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTP  182 (449)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~  182 (449)
                      .++++.++..+.........+.+.++++.++.+.+++.+.+.+++.++.+++|+++||+|||++++++.++.+++.++++
T Consensus         7 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~   86 (393)
T PRK11195          7 AIMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLML   86 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHH
Confidence            34566666666555556666677889999999999999999999999999999999999999999999999999988887


Q ss_pred             hccchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchHHHHHHH
Q 013144          183 WAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFG  262 (449)
Q Consensus       183 ~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~  262 (449)
                      +.  .+.   ++.|+++|++.+...|+..+++.|++|+++|++++++.+....+|.++||.+++.+.+. .|+..+.+.+
T Consensus        87 ~~--~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~  160 (393)
T PRK11195         87 FG--IHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCA  160 (393)
T ss_pred             HH--HHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence            77  664   78899999999999999999999999999999999999999999999999999999886 4777777665


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccCccccCCCCCCCCCchhHHHhhccccHHHHHHHHHHHHHHHHH
Q 013144          263 LSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFV  342 (449)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (449)
                      ...++.. +..+..||.++++++.+.+..... +               +.+..++.++++|.+........+.......
T Consensus       161 ~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~-~---------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  223 (393)
T PRK11195        161 LIYLLAA-LFNLFIPRLGARRPGQSWNPIALL-R---------------DFFHACRVLWRDKLGRFSLAGTTLFWGAGAT  223 (393)
T ss_pred             HHHHHHH-HHHhcCCCCcccccccCCCHHHHH-H---------------HHHHHHHHHHhCchhHHHHHHHHHHHHHHHH
Confidence            5444333 333445554432221111100000 0               0012345678888776655555555555566


Q ss_pred             HHHHHHHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 013144          343 ILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR  390 (449)
Q Consensus       343 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~  390 (449)
                      .....|.|+++.+|.++.+.|+.....+++.+++.++.+++.||.+++
T Consensus       224 ~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~  271 (393)
T PRK11195        224 LRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVL  271 (393)
T ss_pred             HHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence            667778888888999999999999999999999999999998887665

>TIGR00897 2A0118 polyol permease family

Probab=99.96  E-value=2.9e-27  Score=226.74  Aligned_cols=266  Identities=12%  Similarity=0.045  Sum_probs=206.9

Q ss_pred             HHHHHHHHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhh-
Q 013144          104 LALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTP-  182 (449)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~-  182 (449)
                      ..++.+............++++.+++|.++.+.|++.+.+.++..+++++.|++.||+|||+++..+.++.+++.+++. 
T Consensus        18 ~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~   97 (402)
T TIGR00897        18 GYIGVVVFMTGDGLEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIV   97 (402)
T ss_pred             HHHHHHHHHHhhhhHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHH
Confidence            3334333444433444456667789999999999999999999999999999999999999999999999998876553 


Q ss_pred             --hccchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhh-HhHHHHHHHHHhhhCchHHHH
Q 013144          183 --WAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGN-AIGLVLSPILMSQAGIFGPFV  259 (449)
Q Consensus       183 --~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~-~~g~~l~~~l~~~~gwr~~f~  259 (449)
                        .. .++++.+++.|+++|++.+...+...+++.+++|+++|++++|+...+.++|. +++|++++.+.+..||+..+|
T Consensus        98 ~~~~-~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~  176 (402)
T TIGR00897        98 FGLG-HANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLW  176 (402)
T ss_pred             Hhcc-CccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHH
Confidence              21 15788899999999999988888888899999999999999999999999997 689999999988889776666


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccCccccCCCCCCCCCchhHHHhhccccHHHHHHHHHHHHHH
Q 013144          260 IFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWG  339 (449)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (449)
                      ......++..++.++..++.++.+++.+                   +.+.++....++.++|+|.++...+..++....
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (402)
T TIGR00897       177 SALAFVLTGGVIALFSNKDIFTPQHMQT-------------------REKFSELGKAATILFTNPNVLLGGMVRIINTIG  237 (402)
T ss_pred             HHHHHHHHHHHHHHhccCCCCCcccccC-------------------CcchhhHHHHHHHHHcChhHHHHHHHHHHHHHH
Confidence            5544433333334444443322111000                   000111123466789999999888888888888


Q ss_pred             HHHHHHHHHHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 013144          340 FFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR  390 (449)
Q Consensus       340 ~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~  390 (449)
                      .+...++.|.|+++ +|++..+.+.......++.+++.++.|+++||++||
T Consensus       238 ~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~  287 (402)
T TIGR00897       238 LFGFAVFLPMFVAE-LGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWM  287 (402)
T ss_pred             HHHHHHHHHHHHHH-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Confidence            88899999999977 799999999988889999999999999999999987

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.96  E-value=1.7e-27  Score=228.60  Aligned_cols=283  Identities=21%  Similarity=0.185  Sum_probs=207.3

Q ss_pred             HHHHHHHHHHHHHHHHhHhhhhhhhhh-hhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHH
Q 013144           98 VKVVSMLALALALCNADRVVMSVAIVP-LSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSL  176 (449)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i  176 (449)
                      ++.+..+++..++..++.....+.+|. +.+++|.++.+.|++.+++.++..+++++.|+++||+|||++++.+.++.++
T Consensus        14 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~   93 (399)
T PRK05122         14 TLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCAL   93 (399)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHH
Confidence            344556777777788888888888887 6788999999999999999999999999999999999999999999998888


Q ss_pred             HHHHhhhcc------chhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHh
Q 013144          177 ATFLTPWAA------DTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS  250 (449)
Q Consensus       177 ~~~~~~~~~------~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~  250 (449)
                      +.+.++++.      ..+++.+++.|+++|++.+...+...+++.|++|+++|++++++......+|.++|+.+++.+.+
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~  173 (399)
T PRK05122         94 SGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYH  173 (399)
T ss_pred             HHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHH
Confidence            776655431      02577899999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccCccccCCCCCCCCCchhHHHhhccccHHHHH
Q 013144          251 QAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSII  330 (449)
Q Consensus       251 ~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (449)
                      ..||++.+++.++..++..+.. .   +.|+.++..+                     +    ..++++.++  +++...
T Consensus       174 ~~g~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~---------------------~----~~~~~~~~~--~~~~~~  222 (399)
T PRK05122        174 WGGLAGLGLLIMLLALLGLLLA-R---PRPAVPPVKG---------------------E----RLPFRRVLG--RVWPYG  222 (399)
T ss_pred             cccHHHHHHHHHHHHHHHHHHH-h---cCCCCCCCCc---------------------c----chhHHHHHH--HHHHHH
Confidence            9999999887666554433222 1   1121111000                     0    012223332  222222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHhHHHH
Q 013144          331 VANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPG  410 (449)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~  410 (449)
                      ....+..........+.+.|+.+ .|+  .+.+.......++.+++.++.+++.||+++|         ..+..+....+
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~---------~~~~~~~~~~~  290 (399)
T PRK05122        223 MGLALASIGFGTIATFITLYYAA-RGW--DGAALALTLFGVAFVGARLLFGNLINRLGGL---------RVAIVSLLVEI  290 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-ccc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccH---------HHHHHHHHHHH
Confidence            33333444555667788888876 365  3456666778888899999999999999877         23344444445


Q ss_pred             HHHHHhhcccchh
Q 013144          411 IALIGLTAAKSPV  423 (449)
Q Consensus       411 ~~~~~~~~~~~~~  423 (449)
                      ++.+.+...++.+
T Consensus       291 ~~~~~~~~~~~~~  303 (399)
T PRK05122        291 LGLLLLWLAPSPW  303 (399)
T ss_pred             HHHHHHHHhccHH
Confidence            5544444444433

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.96  E-value=1.6e-27  Score=227.02  Aligned_cols=258  Identities=17%  Similarity=0.099  Sum_probs=205.3

Q ss_pred             HHHHHHHHhHhhhhhhhhh-hhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHH-HHHHHHHHHHHhhh
Q 013144          106 LALALCNADRVVMSVAIVP-LSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAW-GVALWSLATFLTPW  183 (449)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~-~~~~~~i~~~~~~~  183 (449)
                      +.++...+......+.+|. +++++|.++.+.|++.+.+.+...+.+++.|+++||+||||.++. +.++..++.+++++
T Consensus         4 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~   83 (375)
T TIGR00899         4 LVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAW   83 (375)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHh
Confidence            3456666666777777776 578899999999999999999999999999999999999887654 55666677788888


Q ss_pred             ccchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHH--HHHHHHhhhhhhHhHHHHHHHHHhhhCchHHHHHH
Q 013144          184 AADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARA--VAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIF  261 (449)
Q Consensus       184 ~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~--~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~  261 (449)
                      +  ++++.+++.|+++|.+.+...|...++..|+.|+++|++.  .+....+.++|..+||.+++.+.+.+|||+.|++.
T Consensus        84 ~--~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~  161 (375)
T TIGR00899        84 N--RNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTA  161 (375)
T ss_pred             c--chHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHH
Confidence            8  9999999999999988888889889999999887777654  67888889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccCccccCCCCCCCCCchhHHHhhccccHHHHHHHHHHHHHHHH
Q 013144          262 GLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFF  341 (449)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (449)
                      ++..++..++.++..||.|++.++.+                         ...+.++.+++|+++...+..++......
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (375)
T TIGR00899       162 ALAFVLCGVLVWLFLPSYPRGAPGAL-------------------------TRLEVRGLLASRDTRLLFVACTLMWGCNI  216 (375)
T ss_pred             HHHHHHHHHHHHHhCCCcccCccccc-------------------------CcchhhhhhcCcchHHHHHHHHHHHHHHH
Confidence            88877776666666666553221100                         00123346677777766665555555555


Q ss_pred             HHHHHHHHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 013144          342 VILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR  390 (449)
Q Consensus       342 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~  390 (449)
                      ....++|.|+++.+|.++.+.+.......+..+++.++.|++.||+++|
T Consensus       217 ~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~  265 (375)
T TIGR00899       217 LYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKR  265 (375)
T ss_pred             HHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcch
Confidence            6667889999888899999999888777777788889999999999988

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.96  E-value=3.6e-27  Score=232.94  Aligned_cols=285  Identities=17%  Similarity=0.172  Sum_probs=212.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHH
Q 013144           95 SERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALW  174 (449)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~  174 (449)
                      +++|+.+..+++..++..++.....+..|.+.+++|+++.+.+++.+.+.++..++.++.|+++||+|||++++.+.++.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~   95 (496)
T PRK03893         16 RAQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLF   95 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            45677888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhccchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCc
Q 013144          175 SLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGI  254 (449)
Q Consensus       175 ~i~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gw  254 (449)
                      +++.++++++  ++++.+++.|++.|++.+...+....++.|++|+++|++++++...+..+|..+++.+++.+.+..||
T Consensus        96 ~~~~~~~~~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w  173 (496)
T PRK03893         96 SVGTLACGFA--PGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGW  173 (496)
T ss_pred             HHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCH
Confidence            9999999998  99999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCC-CHHHHHHHHHhccCccccCCCCCCCCCchh---------HHHhh---
Q 013144          255 FGPFVIFGLSGFLWVLVWLSATSSTPDRHPQI-SKYELEYILREKQKPLLMGNKHKPATVIPP---------FRRLL---  321 (449)
Q Consensus       255 r~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~---  321 (449)
                      |+.|++.++..++ .++.....|+.++..++. ++.+.+...+...      .  .++.....         ....+   
T Consensus       174 ~~~f~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~------~--~~~~~~~~~~~~~~~~~~~~~~~~~  244 (496)
T PRK03893        174 RALFFIGILPIIF-ALWLRKNLPEAEDWKEKHAGKAPVRTMVDILY------R--GEHRIINILLTLAAAAALWFCFAGN  244 (496)
T ss_pred             HHHHHHHHHHHHH-HHHHHHhCCCchhhhhhccccccchhHHHHHh------c--chhHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999875443333 222223334332211000 0000000000000      0  00000000         00000   


Q ss_pred             ----------------------------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccchhhHhhHHHHHH
Q 013144          322 ----------------------------SKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVM  373 (449)
Q Consensus       322 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~  373 (449)
                                                  +.+......+..+......+....++|.|+++.+|++..+++.+.+...++.
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~  324 (496)
T PRK03893        245 LQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGA  324 (496)
T ss_pred             hcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Confidence                                        0000011111111111111235578999998778999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHh
Q 013144          374 AFTGYLGGLLSDMLIQR  390 (449)
Q Consensus       374 ~~~~~~~g~l~dr~g~~  390 (449)
                      +++.++.|++.||+++|
T Consensus       325 ~~g~~~~g~l~dr~g~~  341 (496)
T PRK03893        325 AVGCCVGGFLGDWLGTR  341 (496)
T ss_pred             HHHHHHHHHHHHHhcch
Confidence            99999999999999988

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.96  E-value=6.8e-27  Score=222.76  Aligned_cols=258  Identities=16%  Similarity=0.130  Sum_probs=207.1

Q ss_pred             HHHHHHHHHHHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHH
Q 013144          101 VSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFL  180 (449)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~  180 (449)
                      +..+.++.++.........+.+|.+.+++|.++.++|++.+.+.++..+++++.|+++||+|||+++..+.++.+++..+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~   87 (381)
T PRK03633          8 VLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAG   87 (381)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55566777778888889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchHHHHH
Q 013144          181 TPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVI  260 (449)
Q Consensus       181 ~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~  260 (449)
                      ++++  ++++.++++|+++|++.+...+...+.+.+..++++|+++++++..+.++|..+|+.+++.+.+...|...+ .
T Consensus        88 ~~~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~-~  164 (381)
T PRK03633         88 LGLM--VGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLPW-V  164 (381)
T ss_pred             HHHh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHH-H
Confidence            9998  999999999999999999988988888889999999999999999999999999999999987654333333 2


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccCccccCCCCCCCCCchhHHHhhccccHHHHHHHHHHHHHHH
Q 013144          261 FGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGF  340 (449)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (449)
                      .+........+ ++. +.++++.+                     +  +   ...++++.+|+|.++......+......
T Consensus       165 ~~~~~~~~~~~-~~~-~~~~~~~~---------------------~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (381)
T PRK03633        165 TGLVLAAILPL-LFT-RILNQQAE---------------------N--H---DSTSIWPMLKLRQARLGVNGCIISGIVL  216 (381)
T ss_pred             HHHHHHHHHHH-HHh-cccCCCCC---------------------C--C---CCCCHHHHHHhcchHHHHHHHHHHHHHH
Confidence            22222221111 221 11111100                     0  0   0123456788888776655555555556


Q ss_pred             HHHHHHHHHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 013144          341 FVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR  390 (449)
Q Consensus       341 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~  390 (449)
                      .....++|.|+++ .|.++.+++.......++.+++++..|++.||+++|
T Consensus       217 ~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~  265 (381)
T PRK03633        217 GSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRL  265 (381)
T ss_pred             HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcH
Confidence            6677889999987 599999999998898899999999999999999988

>TIGR00896 CynX cyanate transporter

Probab=99.96  E-value=2.8e-27  Score=223.32  Aligned_cols=244  Identities=16%  Similarity=0.196  Sum_probs=201.1

Q ss_pred             hhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhccchhHHHHHHH
Q 013144          116 VVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAM  195 (449)
Q Consensus       116 ~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~~  195 (449)
                      ...++.+|.+.+++|.+.++.+++.+.+.++..++.++.|+++||+|||+++.++.++..++.+.+ ..  ++++.+++.
T Consensus        17 ~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~--~~~~~l~~~   93 (355)
T TIGR00896        17 TSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SA--PGTALLFAG   93 (355)
T ss_pred             ccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-Hh--ccHHHHHHH
Confidence            567889999999999999999999999999999999999999999999999999999988888877 66  889999999


Q ss_pred             HHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhh--CchHHHHHHHHHHHHHHHHHH
Q 013144          196 RAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQA--GIFGPFVIFGLSGFLWVLVWL  273 (449)
Q Consensus       196 r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~--gwr~~f~~~~~~~~~~~~~~~  273 (449)
                      |++.|++.+...+....++.|++| ++|++++++.+....+|..+++.+++.+.+..  +||+.|.+.++..++..... 
T Consensus        94 ~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~~~~-  171 (355)
T TIGR00896        94 TALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLALLAW-  171 (355)
T ss_pred             HHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH-
Confidence            999999999888888889999996 68999999999999999999999999888765  39999887765544332222 


Q ss_pred             HhcCCCCCCCCCCCHHHHHHHHHhccCccccCCCCCCCCCchhHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013144          274 SATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNF  353 (449)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (449)
                        .|+.+++++.                    +   ++......++.+|+|.++...+..++....++....++|.|+++
T Consensus       172 --~~~~~~~~~~--------------------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~  226 (355)
T TIGR00896       172 --IPQVRRRVAA--------------------N---QTTTRLTPVRIWRSPLAWQVTVFFGLQSGLYYSLIGWLPAILIS  226 (355)
T ss_pred             --hhhhccccCC--------------------C---CCCCCCCCchhhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              2222211100                    0   00001123467888888887777777777788888999999988


Q ss_pred             hhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 013144          354 VYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR  390 (449)
Q Consensus       354 ~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~  390 (449)
                       .|++..+.+...+...++.++++++.|++.||+++|
T Consensus       227 -~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~  262 (355)
T TIGR00896       227 -HGASAATAGSLLALMQLAQAASALLIPALARRVKDQ  262 (355)
T ss_pred             -cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccc
Confidence             599999999999999999999999999999999654

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.96  E-value=3.5e-27  Score=227.55  Aligned_cols=285  Identities=16%  Similarity=0.115  Sum_probs=216.1

Q ss_pred             HHHHHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhh---
Q 013144          107 ALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPW---  183 (449)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~---  183 (449)
                      ..++..+......+.+|.+.++++.++.+.|++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++.+.   
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~  104 (417)
T PRK10489         25 ARFISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAF  104 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHH
Confidence            34555566667788889999999999999999999999999999999999999999999999988888777665432   


Q ss_pred             ccchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchHHHHHHHH
Q 013144          184 AADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGL  263 (449)
Q Consensus       184 ~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~  263 (449)
                      ...++++.+++.|+++|++.+...+...+++.|+.|+++|+++.++.....++|..+||.+++.+.+..||++.|++.++
T Consensus       105 ~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~  184 (417)
T PRK10489        105 LPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAA  184 (417)
T ss_pred             cCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHH
Confidence            11268899999999999999988899999999999999999999999999999999999999999998999999998777


Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccCccccCCCCCCCCCchhHHHhhccccHHHHHHHHHHHHHHHHHH
Q 013144          264 SGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVI  343 (449)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (449)
                      ..++..++.+ ..|+.++++++.+                    +..++....++..+++|.++...+..++.. .....
T Consensus       185 ~~~~~~~~~~-~l~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  242 (417)
T PRK10489        185 GTFITLLPLL-RLPALPPPPQPRE--------------------HPLRSLLAGFRFLLASPVVGGIALLGGLLT-MASAV  242 (417)
T ss_pred             HHHHHHHHHH-hCCCCCCCCcccc--------------------cchHHHHHHHHHHHcChHHHHHHHHHHHHH-HHHhH
Confidence            7665554443 3344332211000                    000111224556777887766555544433 24566


Q ss_pred             HHHHHHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHhHHHHHHHHHhhcccch
Q 013144          344 LSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSP  422 (449)
Q Consensus       344 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (449)
                      ..++|.|+++.+|.++...+++.....++.+++.++.+++.||.+++         ..+..+.+..+++++.+...++.
T Consensus       243 ~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~---------~~l~~~~~~~~~~~~~~~~~~~~  312 (417)
T PRK10489        243 RVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPG---------LLMLLSTLGSFLAVGLFGLMPMW  312 (417)
T ss_pred             HHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcc---------hHHHHHHHHHHHHHHHHHccchH
Confidence            78899999997899999999999999999999999999999875444         23344444445555555444443

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.96  E-value=9.2e-26  Score=215.81  Aligned_cols=268  Identities=15%  Similarity=0.095  Sum_probs=203.5

Q ss_pred             hhhhh-hhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhccchhHHHHHHH
Q 013144          117 VMSVA-IVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAM  195 (449)
Q Consensus       117 ~~~~~-~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~~  195 (449)
                      ...+. .+.+.+++|.+..+.|++.+.+.+...+.+++.|+++||+|||+++..+.++.+++.+++++.  ++++.+++.
T Consensus        28 ~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~--~~~~~l~~~  105 (400)
T PRK11646         28 VVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIA--HEPWLLWLS  105 (400)
T ss_pred             HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHh--ccHHHHHHH
Confidence            33444 445678999999999999999999999999999999999999999999999999999999988  899999999


Q ss_pred             HHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHh
Q 013144          196 RAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSA  275 (449)
Q Consensus       196 r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~  275 (449)
                      |+++|++.+...+...+++.|++|+++|++++++.....++|..+||.+++.+. .+|||+.|++.++..++..++..+.
T Consensus       106 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~  184 (400)
T PRK11646        106 CILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWL  184 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999889999999999999999999999999999999999999999998 6799999999887776655554444


Q ss_pred             cCCCCCCCCCCCHHHHHHHHHhccCccccCCCCCCCCCchhHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013144          276 TSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVY  355 (449)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (449)
                      .|+.++++.                         +++...++++.+++|.++...+..+...........++|.|+++. 
T Consensus       185 ~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-  238 (400)
T PRK11646        185 LPAYKLSTV-------------------------RTPVREGMTRVLRDKRFVTYVLTLTGYYMLAVQVMLMLPIMVNDI-  238 (400)
T ss_pred             CCccccccc-------------------------chhhHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHhhhhhHHhh-
Confidence            443211100                         001123566788898887766655554444444567889999886 


Q ss_pred             CCcccchhhHhhHHHHHHHHHHHHHHHHHHH-HHHhCCCchhhHHHHHHHHhHHHHHHHHHhhcccch
Q 013144          356 HIDLRQASWFSAVPWSVMAFTGYLGGLLSDM-LIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSP  422 (449)
Q Consensus       356 g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (449)
                      +.++.+.+++.....++...+....+++.|| .+.+         ..+..+.+..+++.+.+...++.
T Consensus       239 ~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~---------~~~~~~~~~~~~~~~~l~~~~~~  297 (400)
T PRK11646        239 AGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLE---------HRLMAGLLIMSLSMFPIGMVSNL  297 (400)
T ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh---------HHHHHHHHHHHHHHHHHHHhhhH
Confidence            4477788888777777666655555665554 4333         22234444455555555444443

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.96  E-value=7.1e-26  Score=218.14  Aligned_cols=263  Identities=19%  Similarity=0.142  Sum_probs=201.6

Q ss_pred             HHHHHHHHHHHHhHhhhhhhhhhhhhhcCCCchh-----hHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHH
Q 013144          102 SMLALALALCNADRVVMSVAIVPLSLAHGWSRSF-----SGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSL  176 (449)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i  176 (449)
                      ..++++.++.........+.+|.+.+++|.+..+     .|++.+++.++..++.+++|+++||+|||+++..+.++.++
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~   96 (408)
T PRK09874         17 TVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGI   96 (408)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHH
Confidence            3445566667777778888999999999988654     48999999999999999999999999999999999999999


Q ss_pred             HHHHhhhccchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchH
Q 013144          177 ATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFG  256 (449)
Q Consensus       177 ~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~  256 (449)
                      +.+++++.  ++++.+++.|++.|++.+ ..+....++.|++|+++|++++++......+|..++|.+++.+.+..|||+
T Consensus        97 ~~~~~~~~--~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~  173 (408)
T PRK09874         97 VMVLMGLA--QNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRP  173 (408)
T ss_pred             HHHHHHHH--hhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH
Confidence            99988888  999999999999999865 467788899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccCccccCCCCCCCCCchhHHHhhccccHHHHH-HHHHH
Q 013144          257 PFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSII-VANAM  335 (449)
Q Consensus       257 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  335 (449)
                      .|++.+++.++..+..++..+++++..++.++.                       ...+..+.+++++++... ...+.
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~  230 (408)
T PRK09874        174 VFFITASVLFLCFLVTLFCIRENFQPVSKKEML-----------------------HMREVVTSLKNPKLVLSLFVTTLI  230 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCcccccchhhh-----------------------HHHHHHHhCcCCchHHHHHHHHHH
Confidence            999988887776666666555543221110000                       001223455666665433 33333


Q ss_pred             HHHHHHHHHHHHHHHHHHhhCCccc---chhhHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 013144          336 HSWGFFVILSWMPIYFNFVYHIDLR---QASWFSAVPWSVMAFTGYLGGLLSDMLIQR  390 (449)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~g~s~~---~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~  390 (449)
                      ..........+++.|+.+..+....   ..+.+....+++.+++.+..|++.||++||
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~  288 (408)
T PRK09874        231 IQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPE  288 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            4444455667788888775332221   234555666778888899999999999988

>PRK12382 putative transporter; Provisional

Probab=99.95  E-value=4.6e-26  Score=218.10  Aligned_cols=256  Identities=17%  Similarity=0.147  Sum_probs=186.0

Q ss_pred             HHHHHHHHHHHHHhHhhhhhhhhh-hhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHH
Q 013144          101 VSMLALALALCNADRVVMSVAIVP-LSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATF  179 (449)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~  179 (449)
                      +..+.++.++.........+.+|. +.+++|.|+.++|++.+++.++..++++++|+++||+|||++++.+.+...++.+
T Consensus        17 ~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~   96 (392)
T PRK12382         17 LFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGL   96 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHH
Confidence            334444555666666677777775 5789999999999999999999999999999999999999999999887776654


Q ss_pred             Hh---hhc---cchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhC
Q 013144          180 LT---PWA---ADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG  253 (449)
Q Consensus       180 ~~---~~~---~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~g  253 (449)
                      ..   +..   ..++++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..+||++++.+.+..|
T Consensus        97 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g  176 (392)
T PRK12382         97 AYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFG  176 (392)
T ss_pred             HHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            32   221   115889999999999999999899999999999999999999999999999999999999999999899


Q ss_pred             chHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccCccccCCCCCCCCCchhHHHhhccccHHHHHHHH
Q 013144          254 IFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVAN  333 (449)
Q Consensus       254 wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (449)
                      ||+.+.+..+..++..... ...|+.++++                        +++    .+.++.++  .++...+..
T Consensus       177 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~------------------------~~~----~~~~~~~~--~~~~~~~~~  225 (392)
T PRK12382        177 FAALALTTMVLPLLAWAFN-GTVRKVPAHA------------------------GER----PSLWSVVG--LIWKPGLGL  225 (392)
T ss_pred             hHHHHHHHHHHHHHHHHHH-HhccCCCCCc------------------------ccC----chHHHHHH--HHHHhHHHH
Confidence            9988776554433322211 1112211100                        000    01112221  122222222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 013144          334 AMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR  390 (449)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~  390 (449)
                      ++..........+.|.|+++ .|++  ..+.......++.++++++.|++.||+++|
T Consensus       226 ~l~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~  279 (392)
T PRK12382        226 ALQGVGFAVIGTFVSLYFAS-KGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGV  279 (392)
T ss_pred             HHHHHHHhHHHHHHHHHHHh-cCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            33344555667788888877 4665  355666667777889999999999999987

>TIGR00898 2A0119 cation transport protein

Probab=99.95  E-value=7.1e-27  Score=231.23  Aligned_cols=282  Identities=16%  Similarity=0.113  Sum_probs=205.0

Q ss_pred             hhhhhhhhhcCCC---chhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhccchhHHHHHHHH
Q 013144          120 VAIVPLSLAHGWS---RSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMR  196 (449)
Q Consensus       120 ~~~~~l~~~~~~~---~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~~r  196 (449)
                      +..+.+.+|+|++   ..+.+++.+++.++..+++++.|+++||+|||++++++.++.+++.++++++  ++++.+++.|
T Consensus       110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~r  187 (505)
T TIGR00898       110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFS--PNYTVFLVFR  187 (505)
T ss_pred             cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHc--ccHHHHHHHH
Confidence            5678899999998   8999999999999999999999999999999999999999999999999999  9999999999


Q ss_pred             HHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHhc
Q 013144          197 AVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSAT  276 (449)
Q Consensus       197 ~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~  276 (449)
                      ++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.+++.+.+   ||+.|++.+++.++..+.. +..
T Consensus       188 ~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~~i~~~~~~~~~-~~~  263 (505)
T TIGR00898       188 LLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVSLPTFLFFLLS-WFV  263 (505)
T ss_pred             HHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHH-Hhc
Confidence            999999999999999999999999999999999999999999999999877653   9999999988877766655 556


Q ss_pred             CCCCCCCC-CCCHHHHHHHHHh----ccCccc-----c--CCCCCCCCCchhHHHhhccccHHHHHHHHHHHHHHHHHHH
Q 013144          277 SSTPDRHP-QISKYELEYILRE----KQKPLL-----M--GNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVIL  344 (449)
Q Consensus       277 ~~~~~~~~-~~~~~~~~~~~~~----~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (449)
                      ||+|+... +.+.++..+..++    ......     .  +++..++.....+++++++|.++...+...+..+......
T Consensus       264 ~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  343 (505)
T TIGR00898       264 PESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSY  343 (505)
T ss_pred             CCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHHHH
Confidence            77765321 1112221111111    100000     0  0000011112467789999988777665555444433333


Q ss_pred             HHHHHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHhHHHHHHHHHhhccc
Q 013144          345 SWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAK  420 (449)
Q Consensus       345 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (449)
                      ..++.++.. .+.+.   .......++..+++.++.+++.||+|||         ..+..+.+..+++++.+...+
T Consensus       344 ~~~~~~~~~-~~~~~---~~~~~~~~~~~i~~~~~~~~l~dr~grr---------~~~~~~~~~~~~~~l~~~~~~  406 (505)
T TIGR00898       344 YGLVLDLGN-LGGNI---YLDLFISGLVELPAKLITLLLIDRLGRR---------YTMAASLLLAGVALLLLLFVP  406 (505)
T ss_pred             HHHhccccc-cCCCh---HHHHHHHHHHHHHHHHHHHHHHHHhCCH---------HHHHHHHHHHHHHHHHHHHcC
Confidence            333333333 34442   2334455677788999999999999988         444555555555555554443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.95  E-value=5e-26  Score=216.68  Aligned_cols=283  Identities=13%  Similarity=0.042  Sum_probs=219.6

Q ss_pred             HHHHHHHHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHH----HHHHHHHHHHHH
Q 013144          104 LALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIM----AWGVALWSLATF  179 (449)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l----~~~~~~~~i~~~  179 (449)
                      +.+.++..+.......|.+|.+.+++|.|..++|++.+++.+...++++++|+++||+|||...    .++..+..+  .
T Consensus         9 l~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~--~   86 (382)
T TIGR00902         9 LALGFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA--A   86 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--H
Confidence            4456666677778888999999999999999999999999999999999999999999985433    222222222  2


Q ss_pred             HhhhccchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchHHHH
Q 013144          180 LTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFV  259 (449)
Q Consensus       180 ~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~  259 (449)
                      .+..+  ++++.+++.|+++|.+.+...|...++..++  +++|+++.|......++|.+++|++++.+.+.+|||..|+
T Consensus        87 ~~~~~--~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~  162 (382)
T TIGR00902        87 FSAGA--HNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILA  162 (382)
T ss_pred             HHHhh--hhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHH
Confidence            33456  8999999999999999888889988888765  4788999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccCccccCCCCCCCCCchhHHHhhccccHHHHHHHHHHHHHH
Q 013144          260 IFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWG  339 (449)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (449)
                      +.++..++. +..+...|+.+++++. +                    +++.....++++++|+|++|...+..++....
T Consensus       163 ~~~~~~~~~-~~~~~~~~~~~~~~~~-~--------------------~~~~~~~~~~~~~l~~~~~~~~l~~~~l~~~~  220 (382)
T TIGR00902       163 ILTAGLAFM-LIGFLIKPTIPPKDAI-P--------------------EDESQGDSAFIALLKNPMNLRFLAAVCLIQGA  220 (382)
T ss_pred             HHHHHHHHH-HHHHHcCCCCCCCccc-c--------------------ccccccchhHHHHHcChHHHHHHHHHHHHHHH
Confidence            876553332 2233333322221110 0                    00011123567899999999999888888888


Q ss_pred             HHHHHHHHHHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHhHHHHHHHHHhhcc
Q 013144          340 FFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAA  419 (449)
Q Consensus       340 ~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (449)
                      ......+.|.|+++ .|.++.++|.......++.+++.++.+++.||++.|         .++..+.+..++....+.+.
T Consensus       221 ~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~---------~~l~~~~~~~~~~~~~~~~~  290 (382)
T TIGR00902       221 HAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSAR---------DLLLISAIACVGRWAIIGAI  290 (382)
T ss_pred             HHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHH---------HHHHHHHHHHHHHHHHHHhH
Confidence            88899999999988 799999999998888888888999999999999888         45567777777777777666


Q ss_pred             cchhH
Q 013144          420 KSPVM  424 (449)
Q Consensus       420 ~~~~~  424 (449)
                      ++.+.
T Consensus       291 ~~~~~  295 (382)
T TIGR00902       291 EAFPL  295 (382)
T ss_pred             hhHHH
Confidence            65553

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.95  E-value=7.4e-26  Score=213.22  Aligned_cols=263  Identities=30%  Similarity=0.485  Sum_probs=231.8

Q ss_pred             HHHHHHHHHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhh
Q 013144          103 MLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTP  182 (449)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~  182 (449)
                      .+.+..+....+.....+..|.+.+++|.++.+.+++.+.+.++..++.++.|+++||+|||+.+..+.++..++.++..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~   82 (352)
T cd06174           3 LLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLA   82 (352)
T ss_pred             HHHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHH
Confidence            44566677788888899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchHHHHHHH
Q 013144          183 WAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFG  262 (449)
Q Consensus       183 ~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~  262 (449)
                      +.  ++++.+++.|++.|++.+...+...+++.|++|+++|++.+++......+|..+++.+++.+.+..+||+.+++.+
T Consensus        83 ~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  160 (352)
T cd06174          83 FA--SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILA  160 (352)
T ss_pred             Hh--ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            98  9999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccCccccCCCCCCCCCchhHHHhhccccHHHHHHHHHHHHHHHHH
Q 013144          263 LSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFV  342 (449)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (449)
                      +..++..+...+..                                               |.++...+..++.......
T Consensus       161 ~~~~~~~~~~~~~~-----------------------------------------------~~~~~~~~~~~~~~~~~~~  193 (352)
T cd06174         161 ILGLLLALLLLFLL-----------------------------------------------RLLLLLALAFFLLSFGYYG  193 (352)
T ss_pred             HHHHHHHHHHHHHH-----------------------------------------------HHHHHHHHHHHHHHhHHHH
Confidence            87776665554431                                               4567777888888888889


Q ss_pred             HHHHHHHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHH-HHHHHhHHHHHHHHHhhcccc
Q 013144          343 ILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKI-LQSIGFIAPGIALIGLTAAKS  421 (449)
Q Consensus       343 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  421 (449)
                      ...+.|.++++.+|.+..+.+.......++.+++.++.+++.||+++|         . .+..+.+...++.+.+...++
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---------~~~~~~~~~~~~i~~~~~~~~~~  264 (352)
T cd06174         194 LLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRR---------RLLLLIGLLLAALGLLLLALAPS  264 (352)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------hHHHHHHHHHHHHHHHHHHHhcc
Confidence            999999999997799999999999999999999999999999999988         3 445555566666665555544


Q ss_pred             hh
Q 013144          422 PV  423 (449)
Q Consensus       422 ~~  423 (449)
                      .+
T Consensus       265 ~~  266 (352)
T cd06174         265 LA  266 (352)
T ss_pred             HH
Confidence            33

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.95  E-value=7e-25  Score=209.66  Aligned_cols=253  Identities=15%  Similarity=0.085  Sum_probs=181.3

Q ss_pred             HHHHHHhHhhhhhhhhh-hhhhcCCCchhhHHHHHHHHH-HHHHhhccchhhhhhcCCchHH-HHHHHHHHHHHHHhhhc
Q 013144          108 LALCNADRVVMSVAIVP-LSLAHGWSRSFSGIVQSSFLW-GYLVSPIAGGTLVDYYGGKIIM-AWGVALWSLATFLTPWA  184 (449)
Q Consensus       108 ~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~g~~~s~~~~-~~~~~~~~~G~l~dr~Grr~~l-~~~~~~~~i~~~~~~~~  184 (449)
                      .++.........+.++. +.+++|.+++++|++.+...+ +..++.++.|+ .||+||||.+ ..+.++.+++..+.+++
T Consensus        24 ~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~  102 (393)
T PRK15011         24 AFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWN  102 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHh
Confidence            44444444455555555 678899999999999876655 55566655555 9999999875 45566666777778888


Q ss_pred             cchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchh--hHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchHHHHHHH
Q 013144          185 ADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTER--ARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFG  262 (449)
Q Consensus       185 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r--g~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~  262 (449)
                        ++++.+++.+.+.|...+...|...+++.|+.++++|  +...++...+.++|.++||++++.+.+++|||+.|++.+
T Consensus       103 --~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~  180 (393)
T PRK15011        103 --RNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAA  180 (393)
T ss_pred             --hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHH
Confidence              8999887666555544556788889999998876655  345678889999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccCccccCCCCCCCCCchhHHHhhcc-ccHHHHHHHHHHHHHHHH
Q 013144          263 LSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSK-MPTWSIIVANAMHSWGFF  341 (449)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  341 (449)
                      +..++..+..++..||.+++++... +                +   .    ..   ..++ +..+......+.......
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~-~----------------~---~----~~---~~~~~~~~~~~~~~~~~~~~~~~  233 (393)
T PRK15011        181 VAFIVCGVMVWLFLPSMRKELPLAT-G----------------T---L----EA---PRRNRRDTLLLFVICTLMWGTNS  233 (393)
T ss_pred             HHHHHHHHHHHhhcCccCCCCcccc-c----------------c---c----cc---cccccccHHHHHHHHHHHHHHHH
Confidence            8877776666666666543221100 0                0   0    00   0112 223333333344444555


Q ss_pred             HHHHHHHHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 013144          342 VILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR  390 (449)
Q Consensus       342 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~  390 (449)
                      .+..+.|.|+++.+|+++.+++.+.....++.+++.++.|+++||+++|
T Consensus       234 ~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~  282 (393)
T PRK15011        234 LYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKR  282 (393)
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH
Confidence            5667899999888899999999888777778888999999999999988

>PRK10054 putative transporter; Provisional

Probab=99.95  E-value=1.6e-25  Score=213.88  Aligned_cols=277  Identities=15%  Similarity=0.091  Sum_probs=209.4

Q ss_pred             HHHHHHHHHhHhhhhhhhh-hhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhh
Q 013144          105 ALALALCNADRVVMSVAIV-PLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPW  183 (449)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~  183 (449)
                      ....++.........+.++ .+.+++|.+..+.|++.+.+.++..+++++.|+++||+|||++++++.++.+++.++.++
T Consensus        13 ~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~   92 (395)
T PRK10054         13 LASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPL   92 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHH
Confidence            3344445555555555554 566789999999999999999999999999999999999999999999999999999988


Q ss_pred             ccchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchHHHHHHHH
Q 013144          184 AADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGL  263 (449)
Q Consensus       184 ~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~  263 (449)
                      .  ++++.++++|++.|.+.+...+...++..|..|+++|++++++.....++|.++||++++.+.+ .||+..|++.++
T Consensus        93 ~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~  169 (395)
T PRK10054         93 V--NNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAI  169 (395)
T ss_pred             H--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHH
Confidence            8  9999999999999988888888899999999999999999999999999999999999999875 699999999887


Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccCccccCCCCCCCCCchhHHHhhccccHHHHHHHHHHHHHHHHHH
Q 013144          264 SGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVI  343 (449)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (449)
                      +.++..+...+..|+.++++++.  +                   +  + ..+.++.+|+|.++...+..++........
T Consensus       170 ~~~i~~i~~~~~~~~~~~~~~~~--~-------------------~--~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  225 (395)
T PRK10054        170 CSAFPLVFIQIWVQRSEKAIATE--T-------------------G--S-VWSPSVLLQDKALLWFTCSGFLASFVSGAF  225 (395)
T ss_pred             HHHHHHHHHHHHHhccccccccc--h-------------------h--h-hhhhhhhccCceehHHHHHHHHHHHHHHHh
Confidence            77766555544444332211100  0                   0  0 012257788999988887777777666666


Q ss_pred             HHHHHHHHHHh--hCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHhHHHHHHHHHhh
Q 013144          344 LSWMPIYFNFV--YHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLT  417 (449)
Q Consensus       344 ~~~~~~~~~~~--~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (449)
                      ..+.+.|+...  .+.+....+.+.....+.........|++.||.++|         ..+..++...++....+.
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~---------~~l~~~~~~~~~~~~~~~  292 (395)
T PRK10054        226 ASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIR---------PLMTAGTLCFVIGLVGFI  292 (395)
T ss_pred             hhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCch---------hHHHHHHHHHHHHHHHHH
Confidence            66777777543  244555666776666666666677888999998777         333444444444444443

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.95  E-value=1.7e-25  Score=214.34  Aligned_cols=258  Identities=17%  Similarity=0.145  Sum_probs=200.6

Q ss_pred             HHHHHhHhhhhhhhhhhhhhcC--CCchhhHHHHHH-----HHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHh
Q 013144          109 ALCNADRVVMSVAIVPLSLAHG--WSRSFSGIVQSS-----FLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLT  181 (449)
Q Consensus       109 ~~~~~~~~~~~~~~~~l~~~~~--~~~~~~g~~~s~-----~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~  181 (449)
                      +.++++...++...+.+.+++.  .++.+.+.+.+.     ..++..+++++.|+++||+|||+++.++.++..++.+++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~   82 (394)
T TIGR00883         3 AVEWFDFYLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLI   82 (394)
T ss_pred             chhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            4567788888888888877754  456666665553     233334688999999999999999999999999999999


Q ss_pred             hhccchhHH--------HHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHH----
Q 013144          182 PWAADTSLL--------ALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILM----  249 (449)
Q Consensus       182 ~~~~~~~~~--------~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~----  249 (449)
                      +++  ++++        .+++.|+++|++.+...+...+++.|++|+++|++..++...+..+|.++++.++..+.    
T Consensus        83 ~~~--~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~  160 (394)
T TIGR00883        83 GLL--PSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLG  160 (394)
T ss_pred             hhC--CChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            998  7764        58899999999999999999999999999999999999999999999999999887664    


Q ss_pred             ----hhhCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccCccccCCCCCCCCCchhHHHhhcccc
Q 013144          250 ----SQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMP  325 (449)
Q Consensus       250 ----~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (449)
                          +..+||+.|++.+++.++..+. ....+|+++..+     +.                .+++....+.++.+++++
T Consensus       161 ~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~----------------~~~~~~~~~~~~~~~~~~  218 (394)
T TIGR00883       161 DDALLEWGWRIPFLVSAVLVLIGLYL-RRNLEETPVFEK-----AQ----------------EKHKKKRGPIRETLTKHR  218 (394)
T ss_pred             HHHhhccchHHHHHHHHHHHHHHHHH-HHhcCCChhHHH-----HH----------------hccccccCCHHHHHHhch
Confidence                3568999998877665544332 223333322110     00                000111234556677665


Q ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 013144          326 --TWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR  390 (449)
Q Consensus       326 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~  390 (449)
                        ++...+..++.....+....+.|.|+++.+|.++.+.+.......++.+++.++.|++.||++||
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~  285 (394)
T TIGR00883       219 KPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRR  285 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchH
Confidence              77777777777777888889999999887899999999999999999999999999999999988

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.95  E-value=2.7e-25  Score=211.80  Aligned_cols=278  Identities=12%  Similarity=0.029  Sum_probs=209.7

Q ss_pred             HHHHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCc----hHHHHHHHHHHHHHHHhhh
Q 013144          108 LALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGK----IIMAWGVALWSLATFLTPW  183 (449)
Q Consensus       108 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr----~~l~~~~~~~~i~~~~~~~  183 (449)
                      ++..........+.+|.+.+++|.+..++|++.+++.++..++++++|++.||+|||    +.+.+...+.  .......
T Consensus        13 ~~~~~~~~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~   90 (382)
T PRK11128         13 YFGYFFAYGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFG   90 (382)
T ss_pred             HHHHHHHHHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHh
Confidence            344445556788888999999999999999999999999999999999999999994    3333322222  2223334


Q ss_pred             ccchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchHHHHHHHH
Q 013144          184 AADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGL  263 (449)
Q Consensus       184 ~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~  263 (449)
                      .  +++|.+++.|++.|++.+...+...+++.++  .++|+++.+......++|.++||++++++.+++|||..|++.++
T Consensus        91 ~--~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~  166 (382)
T PRK11128         91 A--HSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTA  166 (382)
T ss_pred             c--ccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHH
Confidence            5  7899999999999999998899888888876  46788889999999999999999999999999999999988776


Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccCccccCCCCCCCCCchhHHHhhccccHHHHHHHHHHHHHHHHHH
Q 013144          264 SGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVI  343 (449)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (449)
                      ..++..+. .+..|+++++.++                    + ++.++...++++++|+|.+|...+..++........
T Consensus       167 ~~~~~~~~-~~~~~~~~~~~~~--------------------~-~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~  224 (382)
T PRK11128        167 GVASMLLG-QLLRPTIMPQGES--------------------R-QQESAGWPAWKALLKEPTVWRFLLCVSLLQGSHAAY  224 (382)
T ss_pred             HHHHHHHH-HHccCCCCCcccc--------------------c-cccccccchHHHHHcChhHHHHHHHHHHHHHHhHhH
Confidence            54444333 2333332111100                    0 000111246789999999998888777777777778


Q ss_pred             HHHHHHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHhHHHHHHHHHhhcccchh
Q 013144          344 LSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPV  423 (449)
Q Consensus       344 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (449)
                      ..+.|.|+++ .|.+..+.|.+.....++.++..++.+++.||+++|         ..+..+.+..++..+.+...++.+
T Consensus       225 ~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~---------~~l~~~~~~~~~~~~~~~~~~~~~  294 (382)
T PRK11128        225 YGFSAIYWQA-AGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSAR---------DLLLLSAICGVVRWGLMGSTTALP  294 (382)
T ss_pred             HHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH---------HHHHHHHHHHHHHHHHHHhhhhHH
Confidence            8888999977 699998999998888888888899999999999888         344555566666655555555544

>TIGR00901 2A0125 AmpG-related permease

Probab=99.95  E-value=5.4e-25  Score=207.92  Aligned_cols=252  Identities=13%  Similarity=0.083  Sum_probs=198.3

Q ss_pred             hhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhc-----CCchH-HHHHHHHHHHHHHHhhhcc-chh
Q 013144          116 VVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYY-----GGKII-MAWGVALWSLATFLTPWAA-DTS  188 (449)
Q Consensus       116 ~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~-----Grr~~-l~~~~~~~~i~~~~~~~~~-~~~  188 (449)
                      ...++..|.+.+|+|+|.+++|+..+. .+...+ .+++|+++||+     ||||. ++.+.++.++...+.++.. ..+
T Consensus         5 ~~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~   82 (356)
T TIGR00901         5 GLVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTD   82 (356)
T ss_pred             hhHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchh
Confidence            456778899999999999999999766 455555 89999999998     89986 5667777777766666652 146


Q ss_pred             HHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhC--------chHHHHH
Q 013144          189 LLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG--------IFGPFVI  260 (449)
Q Consensus       189 ~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~g--------wr~~f~~  260 (449)
                      ++.+.+..++.+++.+...+...+++.|++|+++|+++.++...+..+|.++++.+++.+.+..|        ||..|++
T Consensus        83 l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i  162 (356)
T TIGR00901        83 LPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFW  162 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHH
Confidence            66777888888999898899999999999999999999999999999999999999999988888        9999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccCccccCCCCCCCCCchhHHHhhcccc---HHHHHHHHHHHH
Q 013144          261 FGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMP---TWSIIVANAMHS  337 (449)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~  337 (449)
                      .++..++..+..++..||++++++. ++++.                   ++...++++++++|.   ++...+..++..
T Consensus       163 ~ai~~l~~~~~~~~~~~e~~~~~~~-~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (356)
T TIGR00901       163 TALLILPGLLVTLFLAKEPQEDASV-PKPLT-------------------QAVLKPIREFFQRKNMIQALLLLLLIVLYK  222 (356)
T ss_pred             HHHHHHHHHHHHHHhccCCCccccc-chhHH-------------------HHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence            8887777665555555553322111 10000                   001135667777775   777777777777


Q ss_pred             HHHHHHHHHHHHHHHHhhCCcccchhhHhhHHH-HHHHHHHHHHHHHHHHHHHh
Q 013144          338 WGFFVILSWMPIYFNFVYHIDLRQASWFSAVPW-SVMAFTGYLGGLLSDMLIQR  390 (449)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~-~~~~~~~~~~g~l~dr~g~~  390 (449)
                      ...+....+.|.|+++ +|+++.+.+......+ ++.+++.++++++.||+|+|
T Consensus       223 ~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~  275 (356)
T TIGR00901       223 LGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNIL  275 (356)
T ss_pred             HHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence            8888888999999998 7999999998887766 56788999999999999987

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.95  E-value=9.8e-25  Score=213.53  Aligned_cols=265  Identities=16%  Similarity=0.149  Sum_probs=206.4

Q ss_pred             HHHHHHHHHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhc-----CCchH-HHHHHHHHHH
Q 013144          103 MLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYY-----GGKII-MAWGVALWSL  176 (449)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~-----Grr~~-l~~~~~~~~i  176 (449)
                      .+++..+..+.........+|...++.|.+..++|.+ +.....+ ++.+++|+++||+     |||+. ++++.+..++
T Consensus        16 ~~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~   93 (491)
T PRK11010         16 ILLILGFASGLPLALTSGTLQAWMTVENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLV   93 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHH
Confidence            3444455566666688888999999999999999997 3344444 6899999999999     99985 6677777777


Q ss_pred             HHHHhhhc-cchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHh-hhCc
Q 013144          177 ATFLTPWA-ADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS-QAGI  254 (449)
Q Consensus       177 ~~~~~~~~-~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~-~~gw  254 (449)
                      +..++++. +.++++.+.+.+++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.++..+.+ ..||
T Consensus        94 ~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GW  173 (491)
T PRK11010         94 AIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGW  173 (491)
T ss_pred             HHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCH
Confidence            77777665 225788999999999999999999999999999999999999999999999999999999999988 5799


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccCccccCCCCCCCCCchhHHHhhccccHHHHHHHHH
Q 013144          255 FGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANA  334 (449)
Q Consensus       255 r~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (449)
                      |..|++.+++.++..+..++ .||+++..+. +++                   .++....++++.++++..|...+..+
T Consensus       174 r~~f~i~a~l~ll~~l~~~~-~~e~~~~~~~-~~~-------------------~~~~~~~~l~~~~~~~~~~~~ll~~~  232 (491)
T PRK11010        174 QGMYWLMAALLIPCIIATLL-APEPTDTIPV-PKT-------------------LEQAVVAPLRDFFGRNNAWLILLLIV  232 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHh-cCCCcccccc-ccc-------------------hhhhHHHHHHHHHcCcCHHHHHHHHH
Confidence            99999988877766554444 4554322110 000                   00011235677888888887776666


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhCCcccchhhHhh-HHHHHHHHHHHHHHHHHHHHHHh
Q 013144          335 MHSWGFFVILSWMPIYFNFVYHIDLRQASWFSA-VPWSVMAFTGYLGGLLSDMLIQR  390 (449)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~-~~~~~~~~~~~~~g~l~dr~g~~  390 (449)
                      +..........+.+.|+.+.+|++..+.+.... ...++.+++.+++|+++||+++|
T Consensus       233 l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~  289 (491)
T PRK11010        233 LYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLF  289 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            666666667778888887778999999999874 55578899999999999999987

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.94  E-value=4.8e-25  Score=212.96  Aligned_cols=321  Identities=21%  Similarity=0.185  Sum_probs=258.5

Q ss_pred             chhHHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHH
Q 013144           94 TSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVAL  173 (449)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~  173 (449)
                      ..+.|.+.+...+...........++...+.++++++.+..+++|+.++......+..++.+.+.||||.|.+.++|.++
T Consensus        41 GG~gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v  120 (509)
T KOG2504|consen   41 GGWGWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLV  120 (509)
T ss_pred             CCeeeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHH
Confidence            45567888888788887777778888999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhccchhHHHHHHHH-HHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhh
Q 013144          174 WSLATFLTPWAADTSLLALLAMR-AVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQA  252 (449)
Q Consensus       174 ~~i~~~~~~~~~~~~~~~l~~~r-~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~  252 (449)
                      .++|.++.+++  +++|++++.. ++.|+|.|+.+..+..++..|| +|+|+.+.|+..++.++|.++-|.+..++.+.+
T Consensus       121 ~~~g~~lssF~--~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~  197 (509)
T KOG2504|consen  121 AALGLLLSSFA--TSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYF-EKKRALATGIAVSGTGVGTVVFPPLLKYLLSKY  197 (509)
T ss_pred             HHHHHHHHHHH--hhHHHHHHHHHHHhhccchhhhcchhhhhhhHh-HHHHHHHHhhhhccCCcceeeHHHHHHHHHHHh
Confidence            99999999999  9999887764 8899999999999999999988 699999999999999999999999999999999


Q ss_pred             CchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHH------------Hhc--cCccc----------cCCCC
Q 013144          253 GIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYIL------------REK--QKPLL----------MGNKH  308 (449)
Q Consensus       253 gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~--~~~~~----------~~~~~  308 (449)
                      |||+.+++.+.+.+-..+......|..++..+. ..++.+...            ...  .....          .+..+
T Consensus       198 G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (509)
T KOG2504|consen  198 GWRGALLIFGGISLNVLVAGALLRPLSPPKKPN-EEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPD  276 (509)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCch-hhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCc
Confidence            999999999988877777777777644443222 000000000            000  00000          00000


Q ss_pred             CCC--CCchhH----HHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHH
Q 013144          309 KPA--TVIPPF----RRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGL  382 (449)
Q Consensus       309 ~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~  382 (449)
                      +..  ......    .+++++|.++.+.+...+...+++....++|.|..+ .|++..+++.++++.++..++++++.|+
T Consensus       277 ~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~-~g~~~~~aa~l~Siigi~~i~gRi~~G~  355 (509)
T KOG2504|consen  277 KWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAKS-LGLSSNDAAFLLSIIGVSDIIGRIILGL  355 (509)
T ss_pred             cccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCChhhhHHHHHHHHHhhhhhhhhhhh
Confidence            000  111111    478999999999999999999999999999999996 6999999999999999999999999999


Q ss_pred             HHHHHHHhCCCchhhHHHHHHHHhHHHHHHHHHhhcccchhHHH
Q 013144          383 LSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMAS  426 (449)
Q Consensus       383 l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (449)
                      +.|+...+       ++.+..++++..+++.+.....++.+..+
T Consensus       356 laD~~~~~-------~~~~~~~~ll~~gl~~~~~p~~~~~~~l~  392 (509)
T KOG2504|consen  356 LADKPGIR-------ALVLFLLTLLIAGLARLFLPFATTYVGLI  392 (509)
T ss_pred             hcCccccc-------hHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence            99998854       24666777788888887777776665333

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.94  E-value=1.2e-24  Score=210.21  Aligned_cols=288  Identities=17%  Similarity=0.151  Sum_probs=209.7

Q ss_pred             HHHHHHHHHHHHHHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHH
Q 013144           98 VKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLA  177 (449)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~  177 (449)
                      ...+...++.....++.....+..++.+..|+|- .....|+.+.+.++.+++.++.|+++|.||||+.++.+.++..+|
T Consensus        43 i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~diG~-~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG  121 (599)
T PF06609_consen   43 IASFAAFSLAVIAAYFVLVLPASILPYINADIGG-SDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVG  121 (599)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhH
Confidence            3344445555555556666667788999999995 577899999999999999999999999999999999999999999


Q ss_pred             HHHhhhccchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchHH
Q 013144          178 TFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGP  257 (449)
Q Consensus       178 ~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~  257 (449)
                      .++++.+  +|...++++..+.|+|.|... .....++|..|.|.|+...++.....-+...+++.++..+..+.+|||.
T Consensus       122 ~Iv~atA--~~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~  198 (599)
T PF06609_consen  122 SIVCATA--QNMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWI  198 (599)
T ss_pred             HHHhhcC--CcHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchH
Confidence            9999999  999999999999999987765 4566689999999999988888777666677888888877767799999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCCC---CCCCHHHHHHHHHh-------------------ccC---c-----------
Q 013144          258 FVIFGLSGFLWVLVWLSATSSTPDRH---PQISKYELEYILRE-------------------KQK---P-----------  301 (449)
Q Consensus       258 f~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-------------------~~~---~-----------  301 (449)
                      |++.+++..+.++..+++..++++++   ++.++.+.-+..+-                   ...   .           
T Consensus       199 ~~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lv  278 (599)
T PF06609_consen  199 FYIFIIWSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLV  278 (599)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHH
Confidence            99998877665554444433222211   11111111111000                   000   0           


Q ss_pred             --------cccCCCC-CCCCCchhHHHhhccc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc---chhhHhhH
Q 013144          302 --------LLMGNKH-KPATVIPPFRRLLSKM-PTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLR---QASWFSAV  368 (449)
Q Consensus       302 --------~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~---~~~~~~~~  368 (449)
                              +...|.. ..+....|. +++|++ .+...++..++....++....+.|......++-++.   ..++...+
T Consensus       279 iG~~~Lv~F~~wE~~~~~~~Pl~P~-~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~  357 (599)
T PF06609_consen  279 IGFVLLVAFVVWEWFGAPKDPLFPH-RLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSP  357 (599)
T ss_pred             HHHHHHHHHHHhhhhccCCCCcCCH-HHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhh
Confidence                    0111211 112333344 678874 455556677777777888888899988887777653   57788888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Q 013144          369 PWSVMAFTGYLGGLLSDMLIQR  390 (449)
Q Consensus       369 ~~~~~~~~~~~~g~l~dr~g~~  390 (449)
                      .+.+..++..+.|.+..++++-
T Consensus       358 ~~fg~~~g~~i~g~l~~~ir~~  379 (599)
T PF06609_consen  358 VGFGSCAGAVILGLLFSKIRHI  379 (599)
T ss_pred             HHHHHHHHHHHHHHHHHHccch
Confidence            8888899999999999888755

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.94  E-value=2.8e-24  Score=199.58  Aligned_cols=313  Identities=11%  Similarity=0.033  Sum_probs=223.7

Q ss_pred             hHhhhhhhhhhhhhhcCCCchh-hHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhccchhHHHH
Q 013144          114 DRVVMSVAIVPLSLAHGWSRSF-SGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLAL  192 (449)
Q Consensus       114 ~~~~~~~~~~~l~~~~~~~~~~-~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~l  192 (449)
                      -+...+.+.|.+.+++|+|+.+ .|.+.+++..+++++.++.|+++||+|.|+++.++.+.+++.+++.+++  +++..+
T Consensus        41 ~R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa--~Sl~~L  118 (511)
T TIGR00806        41 FRPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLG--TSVWHM  118 (511)
T ss_pred             hhchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence            3667788899999999999999 9999999999999999999999999999999999999999999999999  999999


Q ss_pred             HHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchHHHHHH--HHHHHHHHH
Q 013144          193 LAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIF--GLSGFLWVL  270 (449)
Q Consensus       193 ~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~--~~~~~~~~~  270 (449)
                      .+.|++.|++.|... +...++..|+|+++|+++.++..++..+|.++++++++. ...+|||+-+...  .+.+....+
T Consensus       119 ~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln~Isl~s~~~a~  196 (511)
T TIGR00806       119 QLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYSTLNIISLVFMTFSV  196 (511)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHHHHHHH
Confidence            999999999999988 999999999999999999999999999999999999999 5568999866553  223333444


Q ss_pred             HHHHhcCCCCCCCCCCCHHHHH-H---HHHhccCccccCCCC-CC-------CCCchhHHHhhccccHHHHHHHHHHHHH
Q 013144          271 VWLSATSSTPDRHPQISKYELE-Y---ILREKQKPLLMGNKH-KP-------ATVIPPFRRLLSKMPTWSIIVANAMHSW  338 (449)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (449)
                      ++.+++|.+++..-..++++.+ .   ..+...........+ .+       ...+..++...+||.+....+-..+...
T Consensus       197 ~~a~~LP~~~~sl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~n~~vl~WSlWwa~a~~  276 (511)
T TIGR00806       197 FLALFLKRPKRSLFFNRLEDVRGALPCELDQMVPGPGGKLEDYLGTCRDSFLVRMLSELVTIYRNPQLLLWSLWWVFNSA  276 (511)
T ss_pred             HHHHhCCCCchhhhhccccccccccccccccCCCCCccccchhhhhhhhHHHHHHHHHHHHHhcCcchhhhhHHHHHHhh
Confidence            4455556433321000000000 0   000000000000000 00       0123345666788999999999989888


Q ss_pred             HHHHHHHHHHHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHhHHHHHHHHHhhc
Q 013144          339 GFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTA  418 (449)
Q Consensus       339 ~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (449)
                      +++.+.+|......+..+-....-|.+-++..+.+.+..+..|++-.++.+-       ....+.+..++.+..++++..
T Consensus       277 g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~~-------~~l~l~v~s~~~~gll~~m~~  349 (511)
T TIGR00806       277 GYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWARW-------SKLLIAVVSAIQAGLVFWMSQ  349 (511)
T ss_pred             HHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchhh-------HHHHHHHHHHHHHHHhhhhhc
Confidence            9988888888877765332222345566666667777788888874444222       235555666666777777777


Q ss_pred             ccchhHHHHHHHHHHHhhh
Q 013144          419 AKSPVMASAWLTLAIGMKS  437 (449)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~  437 (449)
                      .++.|......++.-..+.
T Consensus       350 t~~Iw~~Y~~yvlf~~~y~  368 (511)
T TIGR00806       350 SHDIWVLYVTYVLFRGIYQ  368 (511)
T ss_pred             ccchHHHHHHHHHHHHHHH
Confidence            7777755444444433333

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.94  E-value=3.8e-25  Score=218.12  Aligned_cols=306  Identities=18%  Similarity=0.121  Sum_probs=218.8

Q ss_pred             HHHHHHHHHHHHHHHHh--Hhhhhhhhhhhhhhc-----CCCc--hhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHH
Q 013144           98 VKVVSMLALALALCNAD--RVVMSVAIVPLSLAH-----GWSR--SFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMA  168 (449)
Q Consensus        98 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~-----~~~~--~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~  168 (449)
                      ........+..+..+++  ....+++...+.++.     ..+.  .+.+|+.+...++..+++++.|+++|++|||+.++
T Consensus        44 ~~~~~~~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~  123 (513)
T KOG0254|consen   44 ILLALVAALGGLLFGYDGDIGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLL  123 (513)
T ss_pred             HHHHHHHHHHHHHhCcccccccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            34444445555555554  455566666666532     2222  35599999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHH
Q 013144          169 WGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPIL  248 (449)
Q Consensus       169 ~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l  248 (449)
                      ++.+++.++.++++++  +|+++++++|+++|+|.|......+.+++|..|++.||...+..+....+|..++..++...
T Consensus       124 ~~~~~~~iG~ii~~~a--~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~  201 (513)
T KOG0254|consen  124 LAVVLFLIGAIIIALA--PSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGT  201 (513)
T ss_pred             HHHHHHHHHHHHHHHh--hhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            9999999999999999  99999999999999999999999999999999999999999999999999999996655554


Q ss_pred             Hhh-hCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCC-CCHHHHHHHHHhccC--ccccC-----------CCCCCCCC
Q 013144          249 MSQ-AGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQ-ISKYELEYILREKQK--PLLMG-----------NKHKPATV  313 (449)
Q Consensus       249 ~~~-~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~-----------~~~~~~~~  313 (449)
                      .+. .+||..+.+..+.+++..+. .+..||+|+.--+ .+.++.+........  .....           .+......
T Consensus       202 ~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (513)
T KOG0254|consen  202 SKVYAGWRIPLGLALIPAVILALG-MLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEG  280 (513)
T ss_pred             ccCCccHHHHHHHHHHHHHHHHHH-HHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccc
Confidence            332 48999999999988888887 7777888865322 222222222221111  00000           00000000


Q ss_pred             chhHHHhh----ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHH
Q 013144          314 IPPFRRLL----SKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQ  389 (449)
Q Consensus       314 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~  389 (449)
                      ...+++++    +++.++.+.+..+.+..+.+....|.+.+++.. |.+... .......++...++.+++.++.||+||
T Consensus       281 ~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~-g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gR  358 (513)
T KOG0254|consen  281 KASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSA-GLKSDT-FLASIILGVVNFLGTLVATYLVDRFGR  358 (513)
T ss_pred             cccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhc-CCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            00122333    233455667777777777788888999998885 766443 555566777788888889999999999


Q ss_pred             hCCCchhhHHHHHHHHhHHHHHHHHHhh
Q 013144          390 RGTSVTLTRKILQSIGFIAPGIALIGLT  417 (449)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (449)
                      |         .+++.+...+.++.+++.
T Consensus       359 r---------~lll~s~~~m~~~~~~~~  377 (513)
T KOG0254|consen  359 R---------KLLLFGAAGMSICLVILA  377 (513)
T ss_pred             H---------HHHHHhHHHHHHHHHHHH
Confidence            8         566666666666555443

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.94  E-value=1.4e-23  Score=188.45  Aligned_cols=269  Identities=16%  Similarity=0.159  Sum_probs=227.7

Q ss_pred             HHHHHHHHHHHHHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHH
Q 013144           99 KVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLAT  178 (449)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~  178 (449)
                      ..+..+....++.++......+.+|.+++.++++..+++++...+..++.+.+++.|++.+|+|+|+.+++++.++++++
T Consensus        13 ~~~v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~   92 (422)
T COG0738          13 LAFVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGA   92 (422)
T ss_pred             eHHHHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            45566677777888888889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhc-cchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhh------
Q 013144          179 FLTPWA-ADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQ------  251 (449)
Q Consensus       179 ~~~~~~-~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~------  251 (449)
                      .+..-+ ...+|..++++-++.|.|.+...+.++.+++...++++-.+-+++.+.+.++|.++||++++.+..+      
T Consensus        93 ~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~  172 (422)
T COG0738          93 ALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTM  172 (422)
T ss_pred             HHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhcc
Confidence            987422 2278999999999999999999999999999999998889999999999999999999999998762      


Q ss_pred             -------------hCchHHHHHHHHHHHHHHHHHHHhc-CCCCCCCCCCCHHHHHHHHHhccCccccCCCCCCCCCchhH
Q 013144          252 -------------AGIFGPFVIFGLSGFLWVLVWLSAT-SSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPF  317 (449)
Q Consensus       252 -------------~gwr~~f~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (449)
                                   -.|+++|...+...++..+...... |+.++..+                       +..+......
T Consensus       173 ~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~~~-----------------------~~~~~~~~~~  229 (422)
T COG0738         173 SAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVAAP-----------------------SLGASGSAGL  229 (422)
T ss_pred             CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCcccc-----------------------cccccccchH
Confidence                         1388888887777666555444432 22221110                       0111111145


Q ss_pred             HHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 013144          318 RRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR  390 (449)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~  390 (449)
                      .+++++|+++...+..+++-.....+..|++.|+.+..|.+..++....+.++.+.++|++++.++..|+...
T Consensus       230 ~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~  302 (422)
T COG0738         230 SSLFQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPE  302 (422)
T ss_pred             HHHHhChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH
Confidence            6899999999999999999999999999999999997799999999999999999999999999999998776

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=7.6e-26  Score=201.33  Aligned_cols=264  Identities=20%  Similarity=0.164  Sum_probs=224.2

Q ss_pred             hhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhh
Q 013144          126 SLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGV  205 (449)
Q Consensus       126 ~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~g~g~  205 (449)
                      ..+++-.++++|++.+.+.+.+.+.+++.|.+.||+|+|-.+++|++++...++++++.  ++|+.++++|.+||+|.+.
T Consensus        98 ~~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg--~sy~~l~vAR~LQgvgsA~  175 (464)
T KOG3764|consen   98 AISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFG--NSYPMLFVARSLQGVGSAF  175 (464)
T ss_pred             ccCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHc--chhHHHHHHHHHhhhhHHH
Confidence            34456788999999999999999999999999999999999999999999999999999  9999999999999999999


Q ss_pred             hhhHHHHHHhhccCcch-hhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 013144          206 ALPAMNNMVARWFPQTE-RARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHP  284 (449)
Q Consensus       206 ~~~~~~~~i~~~~~~~~-rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (449)
                      .++.+.++++|.+|+++ |++++|+...+.++|..+||+.||.+.+..|.+.+|++.+++.++-..+.++..++...+..
T Consensus       176 ~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~~  255 (464)
T KOG3764|consen  176 ADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMDPD  255 (464)
T ss_pred             HHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccCcc
Confidence            99999999999998654 89999999999999999999999999999999999999999999988887777654333211


Q ss_pred             CCCHHHHHHHHHhccCccccCCCCCCCCCchhHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccchhh
Q 013144          285 QISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASW  364 (449)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~  364 (449)
                                               ......++++++++|.++.........+.......-.++.++.+.+..+..+.|.
T Consensus       256 -------------------------~~~~~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~  310 (464)
T KOG3764|consen  256 -------------------------STEQGTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGL  310 (464)
T ss_pred             -------------------------ccccCccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHhccCCCcceee
Confidence                                     1112236779999999998888777777777777788889888887755558999


Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHhHHHHHHHHHhhcccchh
Q 013144          365 FSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPV  423 (449)
Q Consensus       365 ~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (449)
                      .+....+...++..+.|.+.||++.-       |......+++..+++.....+.++..
T Consensus       311 ~fLp~~~~y~ig~~lfg~la~k~~~~-------~wl~~~~gl~~~G~~~~~iP~~~~~~  362 (464)
T KOG3764|consen  311 AFLPASLSYAIGTNLFGKLADKYPHL-------RWLLSLGGLATVGVSSGPIPFATSIA  362 (464)
T ss_pred             eecccccchhccCchHHHHHHhcCch-------hHHHHHHHHHHHHHHhchhHhhhhHH
Confidence            99999999999999999999999854       23455566666666666655554443

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.94  E-value=9.7e-24  Score=202.47  Aligned_cols=264  Identities=11%  Similarity=0.047  Sum_probs=204.2

Q ss_pred             HHHHHHHHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhc-----CCch-HHHHHHHHHHHH
Q 013144          104 LALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYY-----GGKI-IMAWGVALWSLA  177 (449)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~-----Grr~-~l~~~~~~~~i~  177 (449)
                      ....++..+.........+|.+.++.|++.+++|++..+...  .+..+++|+++||+     |||| .+.++.++.+++
T Consensus         4 ~~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~   81 (402)
T PRK11902          4 MLLLGFASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAAS   81 (402)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHH
Confidence            344556667777788888999999999999999999777765  69999999999999     8876 788888888888


Q ss_pred             HHHhhhcc-chhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhh-hCch
Q 013144          178 TFLTPWAA-DTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQ-AGIF  255 (449)
Q Consensus       178 ~~~~~~~~-~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~-~gwr  255 (449)
                      ..+.++.+ ..+++.+++..++.++..+...++..+++.|++|+++|+++.++...+..+|.++++.+++.+.+. .|||
T Consensus        82 ~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~  161 (402)
T PRK11902         82 IAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWG  161 (402)
T ss_pred             HHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHH
Confidence            77777762 245788888888889888999999999999999999999999999999999999999999999885 5999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccCccccCCCCCCCCCchhHHHhhccccHHHHHHHHHH
Q 013144          256 GPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAM  335 (449)
Q Consensus       256 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (449)
                      ..|++.+++.++..+.. +..||+++..++.+ +.                   +++...++++++|+|.++...+..++
T Consensus       162 ~~f~i~a~~~l~~~l~~-~~~~e~~~~~~~~~-~~-------------------~~~~~~~~~~l~~~~~~~~~l~~~~l  220 (402)
T PRK11902        162 NTYLLMAGLMLAGALTT-LWAPEPEVPARPPR-SL-------------------GEAVVGPLRDFFSRRGAWALLLLIVL  220 (402)
T ss_pred             HHHHHHHHHHHHHHHHH-HhcCCCcccccccc-hh-------------------HHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence            99999888776554443 34454432211100 00                   00122367789999998887776666


Q ss_pred             HHHHHHHHHHHHHHHHHHhhCCcccchhhHhhHHHH-HHHHHHHHHHHHHHHHHHh
Q 013144          336 HSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWS-VMAFTGYLGGLLSDMLIQR  390 (449)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~g~~  390 (449)
                      ..........+.+.++.+.+|+++.+.+++....+. +.+++.++++++.||+++|
T Consensus       221 ~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~  276 (402)
T PRK11902        221 YKLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLY  276 (402)
T ss_pred             HHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            655544444455566767689999999988766554 5788999999999999987

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.93  E-value=2.3e-24  Score=233.73  Aligned_cols=258  Identities=17%  Similarity=0.148  Sum_probs=196.4

Q ss_pred             hhhhhhhhhhhhhcCCCc--hhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHh---hhccchhHH
Q 013144          116 VVMSVAIVPLSLAHGWSR--SFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLT---PWAADTSLL  190 (449)
Q Consensus       116 ~~~~~~~~~l~~~~~~~~--~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~---~~~~~~~~~  190 (449)
                      .....+.+.+..+++.+.  ...+++.+++.+++.++++++|+++||+|||++++++.++..++.++.   ...  ++++
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~--~~~~  104 (1146)
T PRK08633         27 GHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYL--GWFW  104 (1146)
T ss_pred             HHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHH--ccHH
Confidence            344445555666666554  457999999999999999999999999999999999887766655543   334  6899


Q ss_pred             HHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhh--------h-CchHHHHHH
Q 013144          191 ALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQ--------A-GIFGPFVIF  261 (449)
Q Consensus       191 ~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~--------~-gwr~~f~~~  261 (449)
                      .++++|+++|++.+...++..+++.|++|+++|++++++...+..+|.++|+++++++.+.        + +|++.+.+.
T Consensus       105 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  184 (1146)
T PRK08633        105 LAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLV  184 (1146)
T ss_pred             HHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999876        2 345555444


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccCccccCCCCCCCCCchhHHHhhccccHHHHHHHHHHHHHHHH
Q 013144          262 GLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFF  341 (449)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (449)
                      ++...+..++..+..|+.++......+.+               .....+.....++.++++|.++...+..++......
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  249 (1146)
T PRK08633        185 LLAVAVLGLIFAYRLPKVPAAAPEVFDKK---------------KYLFPKLLWRNLKLLRSDRVLWLAIIGLSYFWFISQ  249 (1146)
T ss_pred             HHHHHHHHHHHHhcCcCCCCCCccccccc---------------ccccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence            44333333333444455543322110000               000011122356678888888888777777777777


Q ss_pred             HHHHHHHHHHHHhhCCccc-chhhHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 013144          342 VILSWMPIYFNFVYHIDLR-QASWFSAVPWSVMAFTGYLGGLLSDMLIQR  390 (449)
Q Consensus       342 ~~~~~~~~~~~~~~g~s~~-~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~  390 (449)
                      ....++|.|+.+.+|++.. ..+++.+...++.+++.++.+++.||++++
T Consensus       250 ~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~  299 (1146)
T PRK08633        250 LAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIEL  299 (1146)
T ss_pred             HHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEc
Confidence            7888999999998999998 899999999999999999999999998876

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.93  E-value=2.1e-23  Score=184.38  Aligned_cols=285  Identities=16%  Similarity=0.219  Sum_probs=234.7

Q ss_pred             HHHHHHHHHHHHHHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHH
Q 013144           98 VKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLA  177 (449)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~  177 (449)
                      +..+..+.+..+----.....++.++.+++|+|++.+..|+++++..++..+.+++..++..|+|.++.+..++++.++|
T Consensus        11 ~~li~gIvlia~NLR~~itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G   90 (395)
T COG2807          11 LLLLAGIVLIAFNLRPAITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAG   90 (395)
T ss_pred             hHHHHHHHHHHhccchhhhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHH
Confidence            44444444444444455678889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhccchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhh-CchH
Q 013144          178 TFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQA-GIFG  256 (449)
Q Consensus       178 ~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~-gwr~  256 (449)
                      ..+-..   .+.+.++.+-.+.|.|.+......+.++.+.|| |+-+..+|++++..++|..+++.+...+.++. |||.
T Consensus        91 ~~iR~~---~~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~  166 (395)
T COG2807          91 ILIRSL---GGLPLLFLGTLLAGAGIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRG  166 (395)
T ss_pred             HHHHhc---ccHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHH
Confidence            998765   377888999999999999999999999999996 78899999999999999999999999998887 7999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccCccccCCCCCCCCCchhHHHhhccccHHHHHHHHHHH
Q 013144          257 PFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMH  336 (449)
Q Consensus       257 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (449)
                      ...+.+.++++.+++++.-..+..  ..                        ..+....+-..++|+|..|.+.+.+.++
T Consensus       167 aL~~WAl~allAl~~WlPq~~r~~--~~------------------------~~~~~~~~~~~vw~~~~aW~vtLfmGlq  220 (395)
T COG2807         167 ALGFWALLALLALLIWLPQALREQ--AA------------------------SIATKLVSVRKVWRSPLAWQVTLFMGLQ  220 (395)
T ss_pred             HHHHHHHHHHHHHHHHhhhccccc--cc------------------------ccccccccccccccCchhHHHHHHHHhh
Confidence            999999999998887776531110  00                        0000111223689999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHhHHHHHHHHHh
Q 013144          337 SWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGL  416 (449)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (449)
                      +..+|....|+|.++.|. |+|+.++|.+.+...+.+++..+....+.+|...+        +.+.......+.++.+.+
T Consensus       221 S~~~Y~~~~WLP~ili~~-G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~--------r~~~~~~~~~~l~G~~G~  291 (395)
T COG2807         221 SLLYYIVIGWLPAILIDR-GLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQ--------RPLVVLALLLMLVGLVGL  291 (395)
T ss_pred             HHHHHHHHHHHHHHHHHc-CCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhccc--------chHHHHHHHHHHHHHHHH
Confidence            999999999999999995 99999999999999999999999999999986554        234444444445555555


Q ss_pred             hcccc
Q 013144          417 TAAKS  421 (449)
Q Consensus       417 ~~~~~  421 (449)
                      .+.+.
T Consensus       292 ~~~P~  296 (395)
T COG2807         292 LLAPG  296 (395)
T ss_pred             HHhhh
Confidence            44433

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.93  E-value=4e-24  Score=231.13  Aligned_cols=269  Identities=16%  Similarity=0.094  Sum_probs=200.1

Q ss_pred             HHHHHHHHHHHHhHhhhhhhh-hhhhhhcCCCc-hhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHH---HHHHHHH
Q 013144          102 SMLALALALCNADRVVMSVAI-VPLSLAHGWSR-SFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAW---GVALWSL  176 (449)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~-~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~---~~~~~~i  176 (449)
                      ...++..+..++....+.... ..+..+.+.+. ...++..+++.+++.++++++|+++||+|||+++..   +.++..+
T Consensus        18 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~   97 (1140)
T PRK06814         18 WTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAA   97 (1140)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHH
Confidence            334444444444444433332 23444444332 457888999999999999999999999999997633   2223333


Q ss_pred             HHHHhhhccchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchH
Q 013144          177 ATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFG  256 (449)
Q Consensus       177 ~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~  256 (449)
                      ..+++...  +++++++++|+++|++.+...|+..+++.+++|+++|++++|+.+++.++|.++||++++++....||++
T Consensus        98 ~~~~~~~~--~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~  175 (1140)
T PRK06814         98 LAIYGFHL--NSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVI  175 (1140)
T ss_pred             HHHHHHHH--hhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHH
Confidence            33334445  7999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccCccccCCCCCCCCCchhHHHhhccccHHHHHHHHHHH
Q 013144          257 PFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMH  336 (449)
Q Consensus       257 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (449)
                      .|+..++..++..++.++ .++.+...+......                 ...+.....++.+.++|.++...+..++.
T Consensus       176 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (1140)
T PRK06814        176 LVALLMGIAVLGWLASLF-IPKTGNAAPDLKIDR-----------------NIIRSTITLLKYAKADKRIWLAILGISWF  237 (1140)
T ss_pred             HHHHHHHHHHHHHHHHhh-CCCCCCCCCCCeecc-----------------chHHHHHHHHHHHhcCchHHHHHHHHHHH
Confidence            995555555544444433 444332211110000                 00001123567888999999998888888


Q ss_pred             HHHHHHHHHHHHHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 013144          337 SWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR  390 (449)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~  390 (449)
                      ++....+..++|.|+++.+|.++...+++.+..+++.+++.++.|+++++..++
T Consensus       238 ~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~  291 (1140)
T PRK06814        238 WLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITL  291 (1140)
T ss_pred             HHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceee
Confidence            888888889999999998999999999999999999999999999999876655

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.93  E-value=2.8e-23  Score=199.07  Aligned_cols=293  Identities=13%  Similarity=0.060  Sum_probs=205.8

Q ss_pred             HHHHHHHHHHHhHhhhhhhhhhh-hhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHh
Q 013144          103 MLALALALCNADRVVMSVAIVPL-SLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLT  181 (449)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~  181 (449)
                      .+....++.+.....+.+.+|.. .+++|.++.+.|++.+++.++..+++++.|+++||+|||+.++.++...+++....
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~   85 (396)
T TIGR00882         6 MFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPF   85 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence            34445555666666666676664 56789999999999999999999999999999999999999988777666544322


Q ss_pred             ---hhcc---chhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCch
Q 013144          182 ---PWAA---DTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIF  255 (449)
Q Consensus       182 ---~~~~---~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr  255 (449)
                         .+.+   .+.+..+++.+++.|++.+...+....+..|..  ++++..++......++|.++||.+++.+.+ .+||
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~  162 (396)
T TIGR00882        86 FIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFS-IDPQ  162 (396)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhc-cCch
Confidence               1120   023444567789999998888888888877754  344567788888889999999999998865 5999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccCccccCCCCCCCCCchhHHHhhccccHHHHHHHHHH
Q 013144          256 GPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAM  335 (449)
Q Consensus       256 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (449)
                      +.|++.+++.++..++.+...|++|++++      .+.    ..      +.++++....+.++++|+|.++...+..++
T Consensus       163 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~----~~------~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~  226 (396)
T TIGR00882       163 IVFWLGSGFALILMLLLMFAKPKAPSSAT------VAN----AL------GANASAFSLKLALELFRQRKFWMFVLYVVG  226 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCchhhh------hhc----cc------ccccCCCCHHHHHHHHcCCcHHHHHHHHHH
Confidence            99999888887766665554444332110      000    00      001112223467789999998877776666


Q ss_pred             HHHHHHHHHHHHHHHHHHhh---CCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHhHHHHHH
Q 013144          336 HSWGFFVILSWMPIYFNFVY---HIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIA  412 (449)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~---g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~  412 (449)
                      ....+.....+.+.|+++.+   +.+....+.......+..+++.+..+++.||+++|         ..+.++.+..++.
T Consensus       227 ~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~---------~~l~~~~~l~~l~  297 (396)
T TIGR00882       227 VACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAK---------NALLIAGTIMSVR  297 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hhHHHHHHHHHHH
Confidence            66666666677888888764   44555678888888888888999999999999988         2334444444444


Q ss_pred             HHHhhcccchh
Q 013144          413 LIGLTAAKSPV  423 (449)
Q Consensus       413 ~~~~~~~~~~~  423 (449)
                      .......++.+
T Consensus       298 ~~~~~~~~~~~  308 (396)
T TIGR00882       298 IIGSSFATTAL  308 (396)
T ss_pred             HHHHHhcCChH
Confidence            44444444444

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.93  E-value=2.6e-23  Score=182.94  Aligned_cols=340  Identities=15%  Similarity=0.100  Sum_probs=246.0

Q ss_pred             cchhHHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHH
Q 013144           93 ITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVA  172 (449)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~  172 (449)
                      ..+.+|........+.....+.....+.+.|.+.+..|.+..+..++......+..+++..+|.++|++|||+.+.+..+
T Consensus        72 fgrfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l  151 (528)
T KOG0253|consen   72 FGRFQWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFL  151 (528)
T ss_pred             cccchhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHH
Confidence            45667888888888888888888888889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhh
Q 013144          173 LWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQA  252 (449)
Q Consensus       173 ~~~i~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~  252 (449)
                      ..++..++.+.+  +|+..+.+.|.+.|+|.|+ .|...++-.|..|..+|+..+-.. ..+.+|.++...+...++.++
T Consensus       152 ~t~v~~~is~~s--pnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~  227 (528)
T KOG0253|consen  152 VTGVFGVISGAS--PNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNF  227 (528)
T ss_pred             HHHHHHHhhcCC--CCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999  9999999999999999999 999999999999999999888777 999999999999999999999


Q ss_pred             CchHHHHHHHHHHHHHHHHHHHhcCCCCCCC-CCCCHHH----HHHHHHhccCcccc-----------C---------CC
Q 013144          253 GIFGPFVIFGLSGFLWVLVWLSATSSTPDRH-PQISKYE----LEYILREKQKPLLM-----------G---------NK  307 (449)
Q Consensus       253 gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~-----------~---------~~  307 (449)
                      ||||.......+..+.+.+.+ ..||+|+-. .+.++.+    .+++.+.+++....           +         ..
T Consensus       228 gwr~~l~~~~~pl~~~a~f~~-w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~  306 (528)
T KOG0253|consen  228 GWRYLLFTSSTPLMFAARFLV-WVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKS  306 (528)
T ss_pred             hHHHHHHHHHhHHHHHHHHHh-hcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhh
Confidence            999998888766555555444 456666532 2222222    22222222221100           0         00


Q ss_pred             CCCCCCchhHHHhhcc---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--CC---------------ccc-chhhH-
Q 013144          308 HKPATVIPPFRRLLSK---MPTWSIIVANAMHSWGFFVILSWMPIYFNFVY--HI---------------DLR-QASWF-  365 (449)
Q Consensus       308 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~---------------s~~-~~~~~-  365 (449)
                      ...+........++..   +.........+...+.+++........++...  +.               ... ...+. 
T Consensus       307 ~a~ke~rg~~~nLlsp~lrkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrd  386 (528)
T KOG0253|consen  307 SAAKEVRGGTTNLLSPKLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRD  386 (528)
T ss_pred             ccccccccchHhhcChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHH
Confidence            1112233344444422   22333444455555556655544444444321  00               000 11111 


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHhHHHHHHHHHhhcccchhHHHHHHHHHHHhhhhccccccc
Q 013144          366 SAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLV  445 (449)
Q Consensus       366 ~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (449)
                      ..+..+....|.++.+++.||+|||         ..+...++..+++++.+....+......+++.+-++...++...++
T Consensus       387 llitslaefPGlLIt~~iverlGRK---------kTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYv  457 (528)
T KOG0253|consen  387 LLITSLAEFPGLLITGVIVERLGRK---------KTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYV  457 (528)
T ss_pred             HHHHHHhhCCchhHHHHHHHHhcch---------hHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEE
Confidence            3345667788999999999999999         5667777888888887777766666666777776676666666665


Q ss_pred             c
Q 013144          446 N  446 (449)
Q Consensus       446 ~  446 (449)
                      +
T Consensus       458 Y  458 (528)
T KOG0253|consen  458 Y  458 (528)
T ss_pred             e
Confidence            4

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.93  E-value=9.6e-24  Score=199.00  Aligned_cols=309  Identities=18%  Similarity=0.146  Sum_probs=222.4

Q ss_pred             HHHHHHHHHHHHHHHHhHhhhhhhhhhhh--------hhcC--CCch----hhHHHHHHHHHHHHHhhccchhhhhhcCC
Q 013144           98 VKVVSMLALALALCNADRVVMSVAIVPLS--------LAHG--WSRS----FSGIVQSSFLWGYLVSPIAGGTLVDYYGG  163 (449)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--------~~~~--~~~~----~~g~~~s~~~~~~~~~~~~~G~l~dr~Gr  163 (449)
                      ........++.+-.++....+++..+.+.        +++|  .++.    ..+.+.+.+.+|.++|++..|.++||+||
T Consensus        10 ~~~~~~~~~gsf~~Gy~~~~iNap~~~i~~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~GR   89 (485)
T KOG0569|consen   10 LLAVIVATLGSFQFGYNIGVVNAPQELIKSFINETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRFGR   89 (485)
T ss_pred             HHHHHHHHHhchhhhhhheecCchHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            33444455555666666666666554443        3345  3433    34677889999999999999999999999


Q ss_pred             chHHHHHHHHHHHHHHHhhhc-cchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHH
Q 013144          164 KIIMAWGVALWSLATFLTPWA-ADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGL  242 (449)
Q Consensus       164 r~~l~~~~~~~~i~~~~~~~~-~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~  242 (449)
                      |..++++.++..++.++..++ ..+++.+++++|++.|+..|......+.++.|..|.+.||....+.+.+..+|..++.
T Consensus        90 K~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~  169 (485)
T KOG0569|consen   90 KNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQ  169 (485)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHH
Confidence            999999999888887776554 1278999999999999999999999999999999999999999999999999999997


Q ss_pred             HHHHH--HHhhhCchHHHHHHHHHHHHHHHHHHHhcCCCCCCC--CCCCHHHHHHHHHhccCc-----------cccCCC
Q 013144          243 VLSPI--LMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRH--PQISKYELEYILREKQKP-----------LLMGNK  307 (449)
Q Consensus       243 ~l~~~--l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-----------~~~~~~  307 (449)
                      .++.-  +.+...|++.+.+..+++++..+.. ...||+|+.-  ++.+.+++.+..+.-...           ...+++
T Consensus       170 ~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l-~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~  248 (485)
T KOG0569|consen  170 VLGLPSLLGTEDLWPYLLAFPLIPALLQLALL-PFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEE  248 (485)
T ss_pred             HHccHHhcCCCcchHHHHHHHHHHHHHHHHHH-hcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHh
Confidence            76633  3344569999998888877766554 4568888642  233333333322211100           000111


Q ss_pred             CCCCCCchhHHHhhccccHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHH
Q 013144          308 HKPATVIPPFRRLLSKMPTWS-----IIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGL  382 (449)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~  382 (449)
                      +..+....++++++++|....     +.+....+..+.+....|...++++. |++..++.+.....++...+.++++.+
T Consensus       249 ~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~a-G~~~~~a~~an~~~g~v~~~~t~~~~~  327 (485)
T KOG0569|consen  249 ELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTA-GFTPEEAQYANLGIGIVNLLSTLVSPF  327 (485)
T ss_pred             ccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            122224456778888765433     33444445556677788888888884 999999999999999999999999999


Q ss_pred             HHHHHHHhCCCchhhHHHHHHHHhHHHHHHHHHhh
Q 013144          383 LSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLT  417 (449)
Q Consensus       383 l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (449)
                      +.||.|||         .+++.+..++.+..+.+.
T Consensus       328 lid~~gRR---------pLll~~~~~~~~~~~~~~  353 (485)
T KOG0569|consen  328 LIDRLGRR---------PLLLISLSLMAVALLLMS  353 (485)
T ss_pred             HHHhcCCc---------HHHHHHHHHHHHHHHHHH
Confidence            99999999         555655555555554443

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.93  E-value=1.6e-23  Score=203.32  Aligned_cols=300  Identities=19%  Similarity=0.158  Sum_probs=235.2

Q ss_pred             HHHHHHHHHHHHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHH
Q 013144          100 VVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATF  179 (449)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~  179 (449)
                      .+..++.+.+++.+...+.....+.+..++.-|+...+++.++..+...+.++++|.++||++||++++.+-++.++..+
T Consensus        11 ~Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~   90 (524)
T PF05977_consen   11 NFRRLWIAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVAL   90 (524)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH
Confidence            45556777788888888888888888888888999999999999999999999999999999999999999988776655


Q ss_pred             Hhhhc---cchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchH
Q 013144          180 LTPWA---ADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFG  256 (449)
Q Consensus       180 ~~~~~---~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~  256 (449)
                      +.++.   ...+.+.+++.-++.|++.+...|+.++++.|..|+++...+.++.+...++..++||.++|.+...+|-.+
T Consensus        91 ~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~  170 (524)
T PF05977_consen   91 LLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAA  170 (524)
T ss_pred             HHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence            44332   225789999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccCccccCCCCCCCCCchhHHHhhccccHHHHHHHHHHH
Q 013144          257 PFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMH  336 (449)
Q Consensus       257 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (449)
                      .|.+.++..++.++......++.+++  +..++                  +..+..+..++.+.++|.+....+..++.
T Consensus       171 ~f~inalsfl~~i~~l~~~~~~~~~~--~~~~e------------------~~~~~l~~G~ryv~~~~~l~~~l~~~~~~  230 (524)
T PF05977_consen  171 AFLINALSFLISILALLRWKPPPPPS--SLPRE------------------RFFSALREGLRYVRSSPPLRSVLLRSFLF  230 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHcccccccc--ccchh------------------hhhhhHHHHHHHHhcchHHHHHHHHHHHH
Confidence            99998776555444433332222111  11111                  01112234566666677777666666666


Q ss_pred             HHHHHHHHHHHHHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHhHHHHHHHHHh
Q 013144          337 SWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGL  416 (449)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (449)
                      ++....+...+|.+.++.+|.++...|++.+..++|.++|.++.+++.+|++++         .++..+.+..+++++.+
T Consensus       231 ~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~---------~lv~~~~~~~a~~~~~l  301 (524)
T PF05977_consen  231 NLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSR---------RLVLLASLLFALALLLL  301 (524)
T ss_pred             HHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcc---------hhhHHHHHHHHHHHHHH
Confidence            666666777899999999999999999999999999999999999988887765         34456666777777777


Q ss_pred             hcccchhHHHHH
Q 013144          417 TAAKSPVMASAW  428 (449)
Q Consensus       417 ~~~~~~~~~~~~  428 (449)
                      .+.++.+.....
T Consensus       302 al~~~~~~~~~~  313 (524)
T PF05977_consen  302 ALSPSFWLALIA  313 (524)
T ss_pred             hcchHHHHHHHH
Confidence            777666644333

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.92  E-value=3.7e-23  Score=199.71  Aligned_cols=289  Identities=13%  Similarity=0.043  Sum_probs=186.5

Q ss_pred             HHHHHHHhHhhhhhhhh-hhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhh-c
Q 013144          107 ALALCNADRVVMSVAIV-PLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPW-A  184 (449)
Q Consensus       107 ~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~-~  184 (449)
                      ..++.........+.++ .+.+++|+++.+.|++.+++.++..++++++|+++||+|||++++++..+.+++...... .
T Consensus        18 ~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~   97 (420)
T PRK09528         18 FFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYV   97 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH
Confidence            33444443344444444 456669999999999999999999999999999999999999998877666555432211 1


Q ss_pred             cch-----hHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchHHHH
Q 013144          185 ADT-----SLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFV  259 (449)
Q Consensus       185 ~~~-----~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~  259 (449)
                      ..+     .+...++++++.|.+.....+....+..+ . .++++..++......++|..++|++++.+.+ .+|++.|+
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~  174 (420)
T PRK09528         98 FAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIER-V-SRRSGFEYGRARMWGSLGWALCAFIAGILFN-INPQINFW  174 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHH-H-HhhccccchhhHHhhhHHHHHHHHHHHHHHh-cCchHhHH
Confidence            001     11112233444444333333333343322 2 3567788899999999999999999999876 48999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccCccccCCCCCCCCCchhHHHhhccccHHHHHHHHHHHHHH
Q 013144          260 IFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWG  339 (449)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (449)
                      +.++++++..++.++..++++++.... +++               ++++++....+.++.+|+|.++...+..+.....
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---------------~~~~~~~~~~~~~~~l~~~~~~~l~l~~~~~~~~  238 (420)
T PRK09528        175 LGSGSALILLVLLFFAKPDAPSTAKVA-NAL---------------GANASAVSLKDALALLKLPKFWFLVLYVIGVACF  238 (420)
T ss_pred             HHHHHHHHHHHHHhcccccccchhhhc-cch---------------hcccccccHHHHHHHccCCCeEeehHHHHHHHHH
Confidence            988877766666555544433221100 000               0011112234556788899887766655555555


Q ss_pred             HHHHHHHHHHHHHHhh---CCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHhHHHHHHHHHh
Q 013144          340 FFVILSWMPIYFNFVY---HIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGL  416 (449)
Q Consensus       340 ~~~~~~~~~~~~~~~~---g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (449)
                      ......+.|.|+.+.+   +.+..+.+.+.+...++.+++.++.|++.||+++|         ..+..+.++.++..++.
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~---------~~~~~~~~l~~~~~~l~  309 (420)
T PRK09528        239 YDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAK---------NALLLAGTIMAVRIIGS  309 (420)
T ss_pred             HHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc---------hhhHHHHHHHHHHHHHH
Confidence            5556667788777643   45556778888888888999999999999999998         23344444445555555


Q ss_pred             hcccchh
Q 013144          417 TAAKSPV  423 (449)
Q Consensus       417 ~~~~~~~  423 (449)
                      .+.++.+
T Consensus       310 ~~~~~~~  316 (420)
T PRK09528        310 GFATGPL  316 (420)
T ss_pred             HhcccHH
Confidence            5555544

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.91  E-value=1.1e-21  Score=191.15  Aligned_cols=162  Identities=15%  Similarity=0.176  Sum_probs=138.0

Q ss_pred             HHHHHHHHHHHHHhHhhhh-hhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhh-cCCchHHHHHHHHHHHHH
Q 013144          101 VSMLALALALCNADRVVMS-VAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDY-YGGKIIMAWGVALWSLAT  178 (449)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr-~Grr~~l~~~~~~~~i~~  178 (449)
                      +..+++..+...+..+... .....+.+++|.+..+.+++.+.+.....+..+++|+++|| +|||++++++.+++.++.
T Consensus        16 ~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~   95 (489)
T PRK10207         16 FFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGY   95 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHH
Confidence            4444445555555544444 45556678899999999999999999999999999999999 999999999999999999


Q ss_pred             HHhhhccchhHH-HHHHHHHHHhhhhhhhhhHHHHHHhhccCcc--hhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCch
Q 013144          179 FLTPWAADTSLL-ALLAMRAVVGLAEGVALPAMNNMVARWFPQT--ERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIF  255 (449)
Q Consensus       179 ~~~~~~~~~~~~-~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~--~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr  255 (449)
                      ++++++  ++.. .++++|+++|+|.|...+...+++.|.+|++  +|+.++++++.+.++|.++||.+++++.+++|||
T Consensus        96 ~~~~~~--~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~  173 (489)
T PRK10207         96 FMTGMS--LLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYS  173 (489)
T ss_pred             HHHHHh--ccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChH
Confidence            999988  6544 3558999999999999999999999999877  4588999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 013144          256 GPFVIFGLS  264 (449)
Q Consensus       256 ~~f~~~~~~  264 (449)
                      +.|++.++.
T Consensus       174 ~~F~i~~i~  182 (489)
T PRK10207        174 VTYNLCGAG  182 (489)
T ss_pred             HHHHHHHHH
Confidence            999986543

>PTZ00207 hypothetical protein; Provisional

Probab=99.90  E-value=2.5e-21  Score=188.66  Aligned_cols=295  Identities=12%  Similarity=0.049  Sum_probs=212.7

Q ss_pred             cchhHHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHH
Q 013144           93 ITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVA  172 (449)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~  172 (449)
                      ...++|..+.......... ...+.++...+.+++++|+|..+++++.+.. .....++++.|++.||+|+|++++++.+
T Consensus        22 ~e~~Rw~~lva~~~~~~~~-g~~y~fsv~s~~L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~l   99 (591)
T PTZ00207         22 NEPRRFALLVLGAFCSICT-SFMYAFNLISGAMQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMT   99 (591)
T ss_pred             cccchHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence            3456676666555544443 3445677888999999999999999998874 3455678789999999999999999999


Q ss_pred             HHHHHHHHhhhccc----hhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHH
Q 013144          173 LWSLATFLTPWAAD----TSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPIL  248 (449)
Q Consensus       173 ~~~i~~~~~~~~~~----~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l  248 (449)
                      +++++.++++++..    ++++.+.+.|++.|+|.+...+.+...+.+|+| ++||++.|+...+.++|.++.+.+...+
T Consensus       100 l~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l  178 (591)
T PTZ00207        100 VFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAF  178 (591)
T ss_pred             HHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999888621    489999999999999999999999999999996 8899999999999999997644444444


Q ss_pred             HhhhCchHHHHHHHHHHHHHHHHHHHhcCCCCCCC-----CCCCHHHHHHHH-Hhc---cCc------------------
Q 013144          249 MSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRH-----PQISKYELEYIL-REK---QKP------------------  301 (449)
Q Consensus       249 ~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-~~~---~~~------------------  301 (449)
                      .. .+|++.|++.+++.++..++++.+.+++|...     ++.++++..... ...   .++                  
T Consensus       179 ~~-~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~  257 (591)
T PTZ00207        179 FS-DNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIV  257 (591)
T ss_pred             HH-HhHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHH
Confidence            33 37899999998888887777777666554322     111222222000 000   000                  


Q ss_pred             --------------------------------cc--------------c-CC----------------CC--------C-
Q 013144          302 --------------------------------LL--------------M-GN----------------KH--------K-  309 (449)
Q Consensus       302 --------------------------------~~--------------~-~~----------------~~--------~-  309 (449)
                                                      ..              . ++                .+        + 
T Consensus       258 yl~~~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (591)
T PTZ00207        258 FLPLQGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDVDY  337 (591)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCcCCCccccccccccccccccccccccccccccC
Confidence                                            00              0 00                00        0 


Q ss_pred             C-CCCchhHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccc--hhhHhhHHHHHHHHHHHHHHHHHHH
Q 013144          310 P-ATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQ--ASWFSAVPWSVMAFTGYLGGLLSDM  386 (449)
Q Consensus       310 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~--~~~~~~~~~~~~~~~~~~~g~l~dr  386 (449)
                      . +.....+.+.+++..+|.+.+..++.......+...+.++.+..-|.+...  ...+.+..++.+.+|++..|.++..
T Consensus       338 ~~P~~~~t~~q~l~~~d~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~  417 (591)
T PTZ00207        338 IAPQFQETFIEGLKTARLWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIW  417 (591)
T ss_pred             CCCCCcchHHHHHhchhHHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHH
Confidence            0 001126778888999999999999998888888888888888742663322  2337789999999999999999955


Q ss_pred             HHHhC
Q 013144          387 LIQRG  391 (449)
Q Consensus       387 ~g~~~  391 (449)
                      ..+|+
T Consensus       418 ~~~~~  422 (591)
T PTZ00207        418 SQKRR  422 (591)
T ss_pred             HHhhc
Confidence            55554

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.90  E-value=5.1e-21  Score=186.47  Aligned_cols=311  Identities=12%  Similarity=0.078  Sum_probs=205.3

Q ss_pred             HHHHHHHHHHHHhHhhhhhhhhhh-hhh--cCCCchhhHHHHHHHHHHHHHhhccchhhhhh-cCCchHHHHHHHHHHHH
Q 013144          102 SMLALALALCNADRVVMSVAIVPL-SLA--HGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDY-YGGKIIMAWGVALWSLA  177 (449)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~l-~~~--~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr-~Grr~~l~~~~~~~~i~  177 (449)
                      ..+++..+...+..+...+.+|.+ .++  +|.+..+.+++.+.+.++..++++++|+++|| +|||++++++.++.+++
T Consensus        13 ~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g   92 (475)
T TIGR00924        13 FTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLG   92 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHH
Confidence            344455555556555666666665 445  89999999999999999999999999999999 89999999999999999


Q ss_pred             HHHhhhccchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcch---hhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCc
Q 013144          178 TFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTE---RARAVAIAMGGFTSGNAIGLVLSPILMSQAGI  254 (449)
Q Consensus       178 ~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~---rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gw  254 (449)
                      .++.+++  ++++.++++|++.|+|.|...+...++++|++|+++   |+.+++++..+.++|.++||.+++++.++.||
T Consensus        93 ~~~~~~~--~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~  170 (475)
T TIGR00924        93 HFMLAMS--IYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGY  170 (475)
T ss_pred             HHHHHhc--ccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence            9999988  888999999999999999999999999999998754   88899999999999999999999999998999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhcC---CCCCCCCCCCHHHHHHHHHhc----------cCccccCCCCC------------
Q 013144          255 FGPFVIFGLSGFLWVLVWLSATS---STPDRHPQISKYELEYILREK----------QKPLLMGNKHK------------  309 (449)
Q Consensus       255 r~~f~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~------------  309 (449)
                      ++.|++.++..++..+..++..+   +.|++.++.++++.+......          .......+...            
T Consensus       171 ~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (475)
T TIGR00924       171 HVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVTLAV  250 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            99999977655544443333222   122111111111111100000          00000000000            


Q ss_pred             -------CCCCchhHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc----chhhHhhHHHHHHHHHHH
Q 013144          310 -------PATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLR----QASWFSAVPWSVMAFTGY  378 (449)
Q Consensus       310 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~----~~~~~~~~~~~~~~~~~~  378 (449)
                             ..+......+..|...+..+.+...+....+....+.++.+.++..+.+..    ..+++.+...+..++..+
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p  330 (475)
T TIGR00924       251 IIFFFRLAFKPRLDAVARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSP  330 (475)
T ss_pred             HHHHHHHHHhccCCHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHH
Confidence                   000000000111222344455555566666666677788888775444322    266788888888888877


Q ss_pred             HHHHHHHHHHHhCCCchhhHHHHHHHHhHHHHHHHHHh
Q 013144          379 LGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGL  416 (449)
Q Consensus       379 ~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (449)
                      +..++..|+.||+.......|  +.++++..+++...+
T Consensus       331 ~~~~~~~~l~~~~~~~~~~~k--~~~G~~l~~~~~~~~  366 (475)
T TIGR00924       331 VLAMIWTRLGRKGKDPTTPLK--FTLGMLFCGASFLTF  366 (475)
T ss_pred             HHHHHHHHHHhCCCCCCcHHH--HHHHHHHHHHHHHHH
Confidence            777777777776332222222  244555555554443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.90  E-value=7.8e-22  Score=191.78  Aligned_cols=250  Identities=17%  Similarity=0.137  Sum_probs=191.7

Q ss_pred             hhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhh----cCCch-HHHHHHHHHHHHHHHhhhccc----hhHH
Q 013144          120 VAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDY----YGGKI-IMAWGVALWSLATFLTPWAAD----TSLL  190 (449)
Q Consensus       120 ~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr----~Grr~-~l~~~~~~~~i~~~~~~~~~~----~~~~  190 (449)
                      ...+.+.+++|+++.++|++.++..+..++..|+.|+++||    +|||| .++++....+++.+++...+.    ....
T Consensus        21 ~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~  100 (437)
T TIGR00792        21 YLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLV  100 (437)
T ss_pred             HHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHH
Confidence            35666778899999999999999999999999999999998    67744 677888888888887766621    1256


Q ss_pred             HHHHHHHHHhhhhhhhhhHHHHHHhhcc-CcchhhHHHHHHHHhhhhhhHhHHHHHHHHHh-------hhCchHHHHHHH
Q 013144          191 ALLAMRAVVGLAEGVALPAMNNMVARWF-PQTERARAVAIAMGGFTSGNAIGLVLSPILMS-------QAGIFGPFVIFG  262 (449)
Q Consensus       191 ~l~~~r~l~G~g~g~~~~~~~~~i~~~~-~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~-------~~gwr~~f~~~~  262 (449)
                      .+++.+++.+++.+...+...++..|.. ++++|++..++...+..+|..+++.+.+.+..       ..|||+.+++.+
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~  180 (437)
T TIGR00792       101 YAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLA  180 (437)
T ss_pred             HHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHH
Confidence            7788889999998888888888889987 57899999999999999998888777666553       357999999988


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccCccccCCCCCCCCCchhHHHhhccccHHHHHHHHHHHHHHHHH
Q 013144          263 LSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFV  342 (449)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (449)
                      ++.++..++.++..+|++++.+.                    +++++.+....++.++++|.++...+..++.....+.
T Consensus       181 ~l~~~~~~~~~~~~~e~~~~~~~--------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  240 (437)
T TIGR00792       181 LIGVVSLIICFFGTKERYSEIPK--------------------NIEKKLSLKQIFKALFKNDQLLILCLAYLFYNLAFNI  240 (437)
T ss_pred             HHHHHHHHHHHcCCEecCCCCCc--------------------ccccCCCHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence            88877766666665554421110                    0011122344677888999999888888877777776


Q ss_pred             HHHHHHHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 013144          343 ILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR  390 (449)
Q Consensus       343 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~  390 (449)
                      ...+.+.|.+..++ ++...+.+.....++.+++.++.+++.||+|+|
T Consensus       241 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~  287 (437)
T TIGR00792       241 KNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRK  287 (437)
T ss_pred             HcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH
Confidence            66666667666555 455667777777888999999999999999987

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00889 2A0110 nucleoside transporter

Probab=99.90  E-value=2.5e-21  Score=186.03  Aligned_cols=276  Identities=12%  Similarity=-0.029  Sum_probs=190.6

Q ss_pred             HHHHHHHHHHhHhhh-hhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCC-chHHHHHHHHHHHHHHHh
Q 013144          104 LALALALCNADRVVM-SVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGG-KIIMAWGVALWSLATFLT  181 (449)
Q Consensus       104 ~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Gr-r~~l~~~~~~~~i~~~~~  181 (449)
                      +++..+..+.....+ ++..+.+.+++|++..++|++.+++.++..++++++|+++||+|| |+++.++.++..++..+.
T Consensus         7 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~   86 (418)
T TIGR00889         7 LKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFA   86 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence            344455555555555 556666778899999999999999999999999999999999965 778888888888888888


Q ss_pred             hhccchhHHHHHHHHHHHhhhhhhhhhHHHHHHh--------hccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhC
Q 013144          182 PWAADTSLLALLAMRAVVGLAEGVALPAMNNMVA--------RWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG  253 (449)
Q Consensus       182 ~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~--------~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~g  253 (449)
                      .+.  ++++.+++.|++.|++.+...+...++..        |......|.+.+|      .+|.++||.+++.+....+
T Consensus        87 ~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~~  158 (418)
T TIGR00889        87 AQV--TTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIELS  158 (418)
T ss_pred             HHh--cCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcccch
Confidence            888  89999999999999987777766655532        2222223444444      4688888998888743333


Q ss_pred             chHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccCccccCCCCCCCCCchhHHHhhccccHHHHHHHH
Q 013144          254 IFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVAN  333 (449)
Q Consensus       254 wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (449)
                      |+ +|++.+++.++..++ .+..||.|+.+++.+.+                   .++....+.++++|+|+++...+..
T Consensus       159 ~~-~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~-------------------~~~~~~~~~~~~~k~~~~~~~~~~~  217 (418)
T TIGR00889       159 NI-QLYITAGSSALLGVF-ALTLPDIPVAKSTAKMS-------------------IKVMLGLDAFILFKNKRMAIFFFFS  217 (418)
T ss_pred             hH-HHHHHHHHHHHHHHH-HhcCCCCCCCccccccC-------------------HHHHhhhhHHHHhcCCCeeeHHHHH
Confidence            54 355555555554444 34456554321110000                   0000011345688899988887777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCcc--------cchhhHhhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Q 013144          334 AMHSWGFFVILSWMPIYFNFVYHIDL--------RQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIG  405 (449)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~g~s~--------~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~  405 (449)
                      ++..........+.+.|+++ .|.++        ...+...+...+..+++.++.|++.||+|+|         .++..+
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r---------~~l~~~  287 (418)
T TIGR00889       218 MLLGAPLQITNIFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIK---------KVMLLS  287 (418)
T ss_pred             HHHHhHHHHHHHhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcH---------HHHHHH
Confidence            77666666666778888877 36544        5568888888889999999999999999988         445555


Q ss_pred             hHHHHHHHHHhhc
Q 013144          406 FIAPGIALIGLTA  418 (449)
Q Consensus       406 ~~~~~~~~~~~~~  418 (449)
                      .+..++....+..
T Consensus       288 ~~~~~v~~~l~~~  300 (418)
T TIGR00889       288 LVAWALRFGFFAY  300 (418)
T ss_pred             HHHHHHHHHHHHH
Confidence            5555555444443

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.90  E-value=2.1e-20  Score=178.70  Aligned_cols=265  Identities=12%  Similarity=0.005  Sum_probs=202.3

Q ss_pred             HHHHHHHHHHHHHhHhhhhhhhhhhhhhcCCCchhhHHH--HHHHHHHHHHhhccc-hhhhhhcCCchHHHHHHHHH-HH
Q 013144          101 VSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIV--QSSFLWGYLVSPIAG-GTLVDYYGGKIIMAWGVALW-SL  176 (449)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~--~s~~~~~~~~~~~~~-G~l~dr~Grr~~l~~~~~~~-~i  176 (449)
                      +..+...++..+.......+.+|.+.++.|.+.+++|++  .++..+...+.++++ ++..||+||||..++.+.+. ++
T Consensus         3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~   82 (390)
T TIGR02718         3 VITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSA   82 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHH
Confidence            456667778888888899999999999999999999997  466788888888888 55799999999876665432 21


Q ss_pred             HHHHhh-hccchh-HHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCc
Q 013144          177 ATFLTP-WAADTS-LLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGI  254 (449)
Q Consensus       177 ~~~~~~-~~~~~~-~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gw  254 (449)
                      .....+ +....+ ..+++..-++.++..+...+...++..|..++++++...+....+..+|.++|+.+.+++.+..||
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw  162 (390)
T TIGR02718        83 CLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQ  162 (390)
T ss_pred             HHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH
Confidence            222222 211122 334455556677777888888888999999988889999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccCccccCCCCCCCCCchhHHHhhccccHHHHHHHHH
Q 013144          255 FGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANA  334 (449)
Q Consensus       255 r~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (449)
                      |..|++.+++.++..+..++..|+++++++.                        ++....++++++|+|.++...+..+
T Consensus       163 ~~~f~~~a~l~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~l~~~~~~~~~~~~~  218 (390)
T TIGR02718       163 RPAFLLVACVPLASLVCVLWLKDRAVASPEA------------------------PLARRASLFRFFRRPLAWSLLALAL  218 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCcCcccc------------------------chhhHHHHHHHHcCcCHHHHHHHHH
Confidence            9999999988777666655554443221110                        0001135678899999888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhCCcccchhhHhhHHHH-HHHHHHHHHHHHHHHHHHh
Q 013144          335 MHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWS-VMAFTGYLGGLLSDMLIQR  390 (449)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~g~~  390 (449)
                      +..........+.+.|+++ .|+++.+++......+. ..+++.++.|++.||+|+|
T Consensus       219 l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~  274 (390)
T TIGR02718       219 LSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLW  274 (390)
T ss_pred             HHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            8777788888899999988 59999999998887764 5667789999999999988

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.89  E-value=7.8e-22  Score=195.70  Aligned_cols=277  Identities=17%  Similarity=0.101  Sum_probs=194.6

Q ss_pred             hhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhh
Q 013144          126 SLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGV  205 (449)
Q Consensus       126 ~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~g~g~  205 (449)
                      .+.++.+.....+..+++.+|..+|++++|+++||+|||+++++++++..++.++.+++  +|++.+++.|+++|++.+.
T Consensus       110 ~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a--~~~~~~~~~Rfl~G~~~~~  187 (521)
T KOG0255|consen  110 WNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFA--PNYWMFLIFRFLSGFFGSG  187 (521)
T ss_pred             hceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHh--CcHHHHHHHHHHHHhhccc
Confidence            35566788899999999999999999999999999999999999999999999999999  9999999999999999999


Q ss_pred             hhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCC
Q 013144          206 ALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQ  285 (449)
Q Consensus       206 ~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (449)
                      ....+..++.|++++++|+.+..+ ......+..+++++++++..  +||+.+++..++.++.++. +++.+|.|+....
T Consensus       188 ~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~Es~rwl~~  263 (521)
T KOG0255|consen  188 PLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFLPPESPRWLLS  263 (521)
T ss_pred             hhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHccCcChHHHHH
Confidence            999999999999999999999999 88888888888888888877  8999999999988877666 5566677765322


Q ss_pred             -CCHHHHHHHHHhccC------cc----cc--C-C--CCCCCCCchhHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHH
Q 013144          286 -ISKYELEYILREKQK------PL----LM--G-N--KHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPI  349 (449)
Q Consensus       286 -~~~~~~~~~~~~~~~------~~----~~--~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (449)
                       .+.++..+..++..+      ..    ..  . +  ..........+.++++.|++....+...+..+.......-++.
T Consensus       264 ~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~y~gl~~  343 (521)
T KOG0255|consen  264 KGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSLVYYGLSL  343 (521)
T ss_pred             cCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHhHHHHhhhh
Confidence             222333322222110      00    00  0 0  0001112234667777775444444333333222222222222


Q ss_pred             HHHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHhHHHHHHHHHhhcccc
Q 013144          350 YFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKS  421 (449)
Q Consensus       350 ~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  421 (449)
                      .... +|.+   ........+.....+....+...|+.|||         .....+.+..+++++.......
T Consensus       344 ~~~~-lg~~---~~~~~~~~~~~~~p~~~~~~~~~~~~gR~---------~~~~~~~~~~~~~~~~~~~~~~  402 (521)
T KOG0255|consen  344 NVSG-LGGN---IYLNFTLSGLVELPAYFRNGLLLPEFGRR---------PPLFLSLFLAGIGLLLFGWLPD  402 (521)
T ss_pred             hhhh-cCch---HHHHHHHHHHHHhhHHHHHHHHHHHhCcH---------HHHHHHHHHHHHHHHHHHHhhc
Confidence            2222 2332   23333444446677777778999999888         5666666666666666655543

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.89  E-value=1.2e-21  Score=173.67  Aligned_cols=251  Identities=14%  Similarity=0.030  Sum_probs=168.4

Q ss_pred             hhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhh
Q 013144          127 LAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVA  206 (449)
Q Consensus       127 ~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~  206 (449)
                      +..+.+..-.|.+.+.+.+++.+.++.+|.++||||||+++++|++..++...+.+++  .|+..++++|++.|+..|. 
T Consensus        61 ~~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S--~~F~afv~aR~l~Gi~kgn-  137 (451)
T KOG2615|consen   61 EPDGASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALS--RNFAAFVLARFLGGIFKGN-  137 (451)
T ss_pred             CcccccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhhhccCc-
Confidence            3334456678999999999999999999999999999999999999999999999999  9997788889999999875 


Q ss_pred             hhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHh---hhCchHHH---HHHHHHHHHHHHHHHHhcCCCC
Q 013144          207 LPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS---QAGIFGPF---VIFGLSGFLWVLVWLSATSSTP  280 (449)
Q Consensus       207 ~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~---~~gwr~~f---~~~~~~~~~~~~~~~~~~~~~~  280 (449)
                      ..++.++++|.+++|+|+++++.++..+++|.++||.+|+++.+   ..|--+.+   ++..+++........++.||+-
T Consensus       138 l~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL  217 (451)
T KOG2615|consen  138 LSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETL  217 (451)
T ss_pred             hHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence            67789999999999999999999999999999999999999987   33322111   1222222221233344456654


Q ss_pred             CCCCCCCH-HHHHHHHHhccCccccCCCCCCCCCchhHHHhhccccHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013144          281 DRHPQISK-YELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTW-------SIIVANAMHSWGFFVILSWMPIYFN  352 (449)
Q Consensus       281 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~  352 (449)
                      +.+++.++ .+.++..+...      +. .+.+ +..-....||+...       .+.+..+.+...+..+.++.+.+..
T Consensus       218 ~~rk~~~~~~~~~~~~~~~~------~~-~~~~-~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~~~l~~  289 (451)
T KOG2615|consen  218 PLRKRNDEHSTLQEAADDRL------AL-LKFA-RIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENTVLFLTH  289 (451)
T ss_pred             cchhhcccccchhhhhhhhh------hh-cchh-hhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhhHHHhhc
Confidence            43333211 00111000000      00 0000 00111233443322       2233333333344444444444445


Q ss_pred             HhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHH
Q 013144          353 FVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLI  388 (449)
Q Consensus       353 ~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g  388 (449)
                      +.+|+++.+.|.+++..++...+.+.......+|.+
T Consensus       290 ~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~  325 (451)
T KOG2615|consen  290 GRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYK  325 (451)
T ss_pred             CccCCChhhheeeeehhhHHHHHHHHhccccccccc
Confidence            668999999999999998888877777766666654

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.88  E-value=3.1e-22  Score=181.59  Aligned_cols=338  Identities=13%  Similarity=0.127  Sum_probs=234.7

Q ss_pred             ccchhHHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhhc-C-------CCchhhHHHHHHHHHHHHHhhccchhhhhhcCC
Q 013144           92 FITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAH-G-------WSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGG  163 (449)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~-------~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Gr  163 (449)
                      ...+++...+.+..++.+.+.++..+++.+.+.+...+ |       .++...+.+..+..+|.++|++++|++.||+||
T Consensus        34 g~qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GR  113 (538)
T KOG0252|consen   34 GLQWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGR  113 (538)
T ss_pred             chhHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            34567788889999999999999999999988887654 2       455677899999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhh
Q 013144          164 KIIMAWGVALWSLATFLTPWAAD-----TSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGN  238 (449)
Q Consensus       164 r~~l~~~~~~~~i~~~~~~~~~~-----~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~  238 (449)
                      |+++...++++.++++++++...     .-.+++.+.|++.|+|.|+.+|.+.++.+|...+++||...+.+.+..++|.
T Consensus       114 K~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~Gi  193 (538)
T KOG0252|consen  114 KKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGI  193 (538)
T ss_pred             hhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhH
Confidence            99999999999999998877621     2377899999999999999999999999999999999999999999999999


Q ss_pred             HhHHHHHHHHHhhh---------------CchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccCccc
Q 013144          239 AIGLVLSPILMSQA---------------GIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLL  303 (449)
Q Consensus       239 ~~g~~l~~~l~~~~---------------gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (449)
                      ..|.+++-.+...+               =||..|.+.++++++... +.+..||+++...-.+++ .+...++.++...
T Consensus       194 laG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly-~Rl~M~Et~~Y~al~~~~-~~~a~~d~~k~~~  271 (538)
T KOG0252|consen  194 LAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLY-FRLKMPETARYTALVSKK-LKQAAGDMKKVLS  271 (538)
T ss_pred             hhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHH-hhhcCCcchhHHHHhhcC-Hhhhhhccccccc
Confidence            98888877664321               299998887777666443 344456655432111111 0011111111100


Q ss_pred             c---------CCCCCCCCCchhHHHhhcc---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccchhh-------
Q 013144          304 M---------GNKHKPATVIPPFRRLLSK---MPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASW-------  364 (449)
Q Consensus       304 ~---------~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~-------  364 (449)
                      .         ...+..++....+...+..   +.....+..+|+.-.++|....+....++. .|+.+.+..+       
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~-ig~~~~~~~~~~~~~vA  350 (538)
T KOG0252|consen  272 VDIEAESTAESDVPPPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSA-IGVIPSANTYHELFKVA  350 (538)
T ss_pred             cccchhhccccCCCCcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccHHHHHHHh-hccCCCcchHHHHHHHH
Confidence            0         0001111111122222222   456667778888888888888888888887 4776655444       


Q ss_pred             -HhhHH-HHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHhHHHHHHHHHhhcccc----hhHHHHHHHHHHHhhhh
Q 013144          365 -FSAVP-WSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKS----PVMASAWLTLAIGMKSF  438 (449)
Q Consensus       365 -~~~~~-~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~  438 (449)
                       ...+. ..+.+.|..+...++|++||+         ...+.+++++.+..+.+....+    .....++..+..++..+
T Consensus       351 ~~~~iia~~~~vPGyw~tv~~id~iGRk---------~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NF  421 (538)
T KOG0252|consen  351 EGNLIIAVCSTVPGYWFTVYFIDIIGRK---------YIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNF  421 (538)
T ss_pred             HHHHHHHHHccCCceeEEEEEeehhhhH---------HHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhc
Confidence             11111 122234556777899999998         7778888888888887776544    12223344445555555


Q ss_pred             ccc
Q 013144          439 SHS  441 (449)
Q Consensus       439 ~~~  441 (449)
                      +..
T Consensus       422 GPn  424 (538)
T KOG0252|consen  422 GPN  424 (538)
T ss_pred             CCC
Confidence            443

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.85  E-value=7.4e-19  Score=172.33  Aligned_cols=164  Identities=15%  Similarity=0.133  Sum_probs=133.4

Q ss_pred             HHHHHHHHHHHhHhhhhh-hhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhh-cCCchHHHHHHHHHHHHHHH
Q 013144          103 MLALALALCNADRVVMSV-AIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDY-YGGKIIMAWGVALWSLATFL  180 (449)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr-~Grr~~l~~~~~~~~i~~~~  180 (449)
                      .+++..+...+..+.+.. ....+.+++|.+..+.+++.+.+........+++|+++|| +|||++++++.++.+++..+
T Consensus        25 ~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l  104 (500)
T PRK09584         25 LIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYAL  104 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence            344444444444444444 4445668899999999999988887777777889999999 59999999999999999998


Q ss_pred             hhhccchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcch--hhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchHHH
Q 013144          181 TPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTE--RARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPF  258 (449)
Q Consensus       181 ~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~--rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f  258 (449)
                      ++++. ++.+.++++|+++|+|.|...+...+++.|++|+++  |+.++++++.+.++|..+||.+++++.+++|||+.|
T Consensus       105 ~~~~~-~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F  183 (500)
T PRK09584        105 VAWSG-HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAF  183 (500)
T ss_pred             HHHhc-ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHH
Confidence            88861 346677888999999999989999999999998643  556889999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 013144          259 VIFGLSGFL  267 (449)
Q Consensus       259 ~~~~~~~~~  267 (449)
                      ++.++..++
T Consensus       184 ~i~~i~~~i  192 (500)
T PRK09584        184 ALSVVGMLI  192 (500)
T ss_pred             HHHHHHHHH
Confidence            997754444

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.84  E-value=6.4e-18  Score=161.64  Aligned_cols=292  Identities=16%  Similarity=0.086  Sum_probs=197.1

Q ss_pred             HHHHHHHHHHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhh----hcCCchHHHHH-HHHHHH
Q 013144          102 SMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVD----YYGGKIIMAWG-VALWSL  176 (449)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~d----r~Grr~~l~~~-~~~~~i  176 (449)
                      +.++...+...+.+....+..+++.+++|.+..+.+++..+..+...+.+++.|+++|    |+|||+.++++ .....+
T Consensus         7 i~~~~~~~Giq~~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~   86 (477)
T TIGR01301         7 LRVASVAAGVQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAF   86 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHH
Confidence            3344444555666667777777788999999999999999999999999999999999    59999988875 666666


Q ss_pred             HHHHhhhccchhHH-----------------HHHHHHHHHhhhhhhhhhHHHHHHhhccCcchh--hHHHHHHHHhhhhh
Q 013144          177 ATFLTPWAADTSLL-----------------ALLAMRAVVGLAEGVALPAMNNMVARWFPQTER--ARAVAIAMGGFTSG  237 (449)
Q Consensus       177 ~~~~~~~~~~~~~~-----------------~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r--g~~~~~~~~~~~~G  237 (449)
                      +.++.+++  ++.+                 .++++-.+..++.....+...++++|.+|+++|  +.+.++.+...++|
T Consensus        87 ~l~ll~~~--~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG  164 (477)
T TIGR01301        87 AVILIGFA--ADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIG  164 (477)
T ss_pred             HHHHHHhC--chhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHH
Confidence            66777776  4432                 233333445557777888899999999998765  68999999999999


Q ss_pred             hHhHHHHHHHH--Hhhh-------------CchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccCcc
Q 013144          238 NAIGLVLSPIL--MSQA-------------GIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPL  302 (449)
Q Consensus       238 ~~~g~~l~~~l--~~~~-------------gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (449)
                      .++|+.++++.  .+.+             +.|+.|++.+++.++..++..+..+|.|...++..+++ +.         
T Consensus       165 ~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~-~~---------  234 (477)
T TIGR01301       165 NVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINS-EA---------  234 (477)
T ss_pred             HHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhh-hc---------
Confidence            99999999875  2222             56889999888877777777777777654221110000 00         


Q ss_pred             ccCCCCCCCCCchhHHHhhcc-----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhCCcccc----------hhhHh
Q 013144          303 LMGNKHKPATVIPPFRRLLSK-----MPTWSIIVANAMHSWGFFVILSWMPIYFNF-VYHIDLRQ----------ASWFS  366 (449)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~----------~~~~~  366 (449)
                         ++.++......+++++++     |.++.+++..++..++.+.+..|.+.|+.+ .++-++..          ..+..
T Consensus       235 ---~~~~~~~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l  311 (477)
T TIGR01301       235 ---APPSKHGEEAFFGELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGL  311 (477)
T ss_pred             ---ccccccchhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHH
Confidence               000011111123333322     568889999999999999999999999874 55543321          11233


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHhHHHHHHHHHh
Q 013144          367 AVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGL  416 (449)
Q Consensus       367 ~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (449)
                      ....+...+.+++..++.+|+|+|        |.+..++.+..++++...
T Consensus       312 ~~~s~~~~i~s~~l~~l~~~~g~~--------k~~~~~s~~~~~~~l~~~  353 (477)
T TIGR01301       312 MLNSVVLGITSIGMEKLCRGWGAG--------KRLWGIVNIILAICLAAT  353 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccc--------hhHHHHHHHHHHHHHHHH
Confidence            344445556666777777777743        234345544444444443

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.84  E-value=1.4e-24  Score=211.88  Aligned_cols=280  Identities=19%  Similarity=0.183  Sum_probs=193.7

Q ss_pred             HHHHHHHHHhHhhhhhhhhhhh--hhcCC---------CchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHH
Q 013144          105 ALALALCNADRVVMSVAIVPLS--LAHGW---------SRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVAL  173 (449)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~l~--~~~~~---------~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~  173 (449)
                      .++.+..+++....+...+...  ..+..         +..+.+++.+...+|..+|+++.|.++||+|||+.++++.++
T Consensus         6 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~   85 (451)
T PF00083_consen    6 SLGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALL   85 (451)
T ss_pred             HHHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhcccccccccccccccccccccccccc
Confidence            3445777777777766655544  22222         223578999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhccch---hHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHh
Q 013144          174 WSLATFLTPWAADT---SLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS  250 (449)
Q Consensus       174 ~~i~~~~~~~~~~~---~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~  250 (449)
                      ..++.++.+++  +   +++.+.++|+++|++.|...+....++.|..|+++|++..++.+.+..+|..++..++..+..
T Consensus        86 ~~i~~~~~~~~--~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~  163 (451)
T PF00083_consen   86 MIIGSILIAFA--PSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSY  163 (451)
T ss_pred             ccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999  8   999999999999999999999999999999999999999999999999999999888766644


Q ss_pred             hh---CchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCC-CHHHHHHHHHhccC------ccccC--CCCCCCCCchhHH
Q 013144          251 QA---GIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQI-SKYELEYILREKQK------PLLMG--NKHKPATVIPPFR  318 (449)
Q Consensus       251 ~~---gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~------~~~~~--~~~~~~~~~~~~~  318 (449)
                      ..   +||+.+++.++++++..+.. +..||+|+.--.. +.+|.++..++...      +..+.  +.++.++....++
T Consensus       164 ~~~~~~Wr~~~~~~~~~~l~~~~~~-~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (451)
T PF00083_consen  164 YSDNWGWRILLIFGAIPSLLVLLLR-FFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWR  242 (451)
T ss_pred             ccccccccccccccccccccccccc-cccccccceecccccccccccccccccccccccccccccccccccccccceeee
Confidence            33   49999999888887655544 5668888753222 22222222222100      00000  0001111113455


Q ss_pred             Hhhcccc----HHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 013144          319 RLLSKMP----TWSIIVANAMH-SWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR  390 (449)
Q Consensus       319 ~~~~~~~----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~  390 (449)
                      ++++++.    +........+. ..+.+....+.+.++++ .+.+..  -.......+...++.+++.++.||+|||
T Consensus       243 ~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr  316 (451)
T PF00083_consen  243 DLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFEN-AGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRR  316 (451)
T ss_pred             eccccccccccccccccccccccccccccccccccccccc-cccccc--cccccccccccccccccccccccccccc
Confidence            6666532    22222222222 33334455566666655 476655  2233344456677788888999999999

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.84  E-value=2.1e-18  Score=157.11  Aligned_cols=280  Identities=15%  Similarity=0.138  Sum_probs=225.9

Q ss_pred             ccchhHHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHH
Q 013144           92 FITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGV  171 (449)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~  171 (449)
                      +..++||.++++.++..+.+.+.+..+++........++ +....-|..-+|++.+....+++-|+.||+|-|..++++.
T Consensus        38 rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt  116 (480)
T KOG2563|consen   38 RVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGT  116 (480)
T ss_pred             ccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHH
Confidence            356788999999999999999999999999999988899 8888899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhccc----hhHH--HHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHH
Q 013144          172 ALWSLATFLTPWAAD----TSLL--ALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLS  245 (449)
Q Consensus       172 ~~~~i~~~~~~~~~~----~~~~--~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~  245 (449)
                      ...++|..+-..+..    +.++  ....+..+.+.+.-.....-..+..-||++++|..+..+-..+..+|.++|.++.
T Consensus       117 ~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llp  196 (480)
T KOG2563|consen  117 VLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLP  196 (480)
T ss_pred             HHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhcc
Confidence            999999998665521    3455  7778889999888877777778889999999999999999999999999999998


Q ss_pred             HHHHhhh------CchH--HHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccCccccCCCCCCCCCchhH
Q 013144          246 PILMSQA------GIFG--PFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPF  317 (449)
Q Consensus       246 ~~l~~~~------gwr~--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (449)
                      ..+..+-      .|..  .|+..+.++.+.+++..+..+++|+.++.......                 .+.+.....
T Consensus       197 pilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~~~-----------------~~~~f~~si  259 (480)
T KOG2563|consen  197 PILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQAAL-----------------QDASFPKSI  259 (480)
T ss_pred             ceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhhh-----------------hcCcHHHHH
Confidence            8887643      3544  35545555555555556666665554433221111                 122345678


Q ss_pred             HHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 013144          318 RRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR  390 (449)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~  390 (449)
                      ++.++++++....+.+.+....+++..+.+-.-+.. .|++...+|+......++++++.++.|.+.||.++-
T Consensus       260 ~~~~~n~~F~il~~~ygi~~g~F~~l~~~l~~~l~~-sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~f  331 (480)
T KOG2563|consen  260 KSCFKNRQFIILAICYGIGLGLFNSLSTLLNLALCP-SGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKF  331 (480)
T ss_pred             HHHHcCccHHHHHHHHhhhHHHHHHHHHHhhhcccc-ccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhH
Confidence            899999999999999888888888887777655555 377778999999999999999999999999998765

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.82  E-value=2.9e-17  Score=157.85  Aligned_cols=168  Identities=13%  Similarity=0.108  Sum_probs=132.0

Q ss_pred             HHHHHHHHHHHhHhhhhhhhhh-hhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhc-CCchHHHHHHHHHHHHHHH
Q 013144          103 MLALALALCNADRVVMSVAIVP-LSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYY-GGKIIMAWGVALWSLATFL  180 (449)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~~i~~~~  180 (449)
                      .++...+...+..+.+...+|. +.+++|.++.+.+.+.+.+.....++.+++|+++||+ |||++++++.++..++.++
T Consensus        13 ~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~ll   92 (493)
T PRK15462         13 YVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVV   92 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHH
Confidence            3444444445444455555554 4567899999999999999999999999999999999 9999999999999999887


Q ss_pred             hhhccchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcc--hhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchHHH
Q 013144          181 TPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQT--ERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPF  258 (449)
Q Consensus       181 ~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~--~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f  258 (449)
                      ++... .+...++++..+.++|.|...+...++++|.+|++  +|..++++...+.++|..++|.+.+++.+..||++.|
T Consensus        93 l~~~~-~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F  171 (493)
T PRK15462         93 LGASE-IHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGF  171 (493)
T ss_pred             HHHhh-cchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHH
Confidence            76541 12233444455556667777788889999999875  6999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 013144          259 VIFGLSGFLWVLV  271 (449)
Q Consensus       259 ~~~~~~~~~~~~~  271 (449)
                      .+.++..++.++.
T Consensus       172 ~iaaigm~l~li~  184 (493)
T PRK15462        172 GLAAVGMIAGLVI  184 (493)
T ss_pred             HHHHHHHHHHHHH
Confidence            9876544443333

>PRK09669 putative symporter YagG; Provisional

Probab=99.81  E-value=1.6e-17  Score=161.57  Aligned_cols=248  Identities=16%  Similarity=0.088  Sum_probs=175.1

Q ss_pred             hhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhh----cCCc-hHHHHHHHHHHHHHHHhhhcc----chhH
Q 013144          119 SVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDY----YGGK-IIMAWGVALWSLATFLTPWAA----DTSL  189 (449)
Q Consensus       119 ~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr----~Grr-~~l~~~~~~~~i~~~~~~~~~----~~~~  189 (449)
                      ......+.+++|++..++|.+.++..+..++..|+.|+++||    +||| +.++.+.+..++..++....+    ...+
T Consensus        30 ~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~  109 (444)
T PRK09669         30 LFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKI  109 (444)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHH
Confidence            345666778899999999999999999999999999999999    7874 556677777777776554442    1235


Q ss_pred             HHHHHHHHHHhhhhhhhhhHHHHHHhhcc-CcchhhHHHHHHHHhhhhhhHhHHHHHHHHHh-------hhCchHHHHHH
Q 013144          190 LALLAMRAVVGLAEGVALPAMNNMVARWF-PQTERARAVAIAMGGFTSGNAIGLVLSPILMS-------QAGIFGPFVIF  261 (449)
Q Consensus       190 ~~l~~~r~l~G~g~g~~~~~~~~~i~~~~-~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~-------~~gwr~~f~~~  261 (449)
                      +++++..++.+.+.........++.+|+. ++++|.+..++...+..+|..+++.+...+..       ..||+..+.+.
T Consensus       110 ~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~  189 (444)
T PRK09669        110 IYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVM  189 (444)
T ss_pred             HHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHH
Confidence            66777777777777777777889999998 56889999899888888888888776555443       24688888888


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccCccccCCCCCCCCCchhHHHhhccccHHHHHHHHHHHHHHHH
Q 013144          262 GLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFF  341 (449)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (449)
                      ++++++..++.++..+|.++..+                       +++.+...+++.++|||.++...+..++......
T Consensus       190 ~ii~~v~~~~~~~~~~e~~~~~~-----------------------~~~~~~~~~~~~~~~n~~~~~l~~~~~~~~~~~~  246 (444)
T PRK09669        190 GLLGVVLFFCCFFMTKERYTPEV-----------------------DNSSSVWKDLKLLLGNSQWRIMFIFNVVLLTAVV  246 (444)
T ss_pred             HHHHHHHHHHHhCCeEEecCCCC-----------------------cCCCCHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Confidence            77776665555554444321110                       0112234567888999999888877776666665


Q ss_pred             HHHHHHHHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 013144          342 VILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR  390 (449)
Q Consensus       342 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~  390 (449)
                      ......+.|.+...+. +...+.+.....+..+++.++.+++.||+|+|
T Consensus       247 ~~~~~~~y~~~~~~~~-~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~  294 (444)
T PRK09669        247 TRGGATLYYVNYVLLR-PDLATLFLVTGMIAGLFGALLSERLLGKFDRV  294 (444)
T ss_pred             HHhhhhheeeeeecCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH
Confidence            5555454444443332 23334444555567778888999999999988

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.81  E-value=4.1e-19  Score=151.16  Aligned_cols=281  Identities=15%  Similarity=0.207  Sum_probs=211.5

Q ss_pred             chhHHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhh-cCCchHHHHHHH
Q 013144           94 TSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDY-YGGKIIMAWGVA  172 (449)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr-~Grr~~l~~~~~  172 (449)
                      ..+|...+..+|+..+.+++.....+....++..|.+++.++..++.+.|.....+.+++.|++.|| +|-|..-++-+.
T Consensus        39 l~hr~m~lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~  118 (459)
T KOG4686|consen   39 LGHRFMALVFMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCI  118 (459)
T ss_pred             hhhHHHHHHHHHHhcccceeecCCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHH
Confidence            3456677788888888888888888888899999999999999999999999999999999999997 788888777788


Q ss_pred             HHHHHHHHhhhcc-chhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhh
Q 013144          173 LWSLATFLTPWAA-DTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQ  251 (449)
Q Consensus       173 ~~~i~~~~~~~~~-~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~  251 (449)
                      +..+|.++.+... .+.+|.+.++|++.|+|.-...++.+++...|+..|+.+.++|+..+...+|..+--.+.+++.+.
T Consensus       119 fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~  198 (459)
T KOG4686|consen  119 FVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDT  198 (459)
T ss_pred             HHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHH
Confidence            8888888765431 278999999999999998888889999999999999999999999999999998888888887765


Q ss_pred             hCch------H---HHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccCccccCCCCCCCCCchhHHHhhc
Q 013144          252 AGIF------G---PFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLS  322 (449)
Q Consensus       252 ~gwr------~---~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (449)
                      .+--      .   .....+...+..-++.....        ...++.+++..+..+..  ..++    ....+. .-+ 
T Consensus       199 ~~~~~~~~ghT~LG~~l~~~~~tc~~slical~l--------g~~D~rAerilh~e~g~--~Ge~----pkLtdv-~~f-  262 (459)
T KOG4686|consen  199 MGRMFPGVGHTLLGLWLCFEVKTCKQSLICALSL--------GLSDDRAERILHLEEGF--LGEE----PKLTDV-NTF-  262 (459)
T ss_pred             HHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHh--------hhhhhHHHHHHhhhcCc--ccCC----cccccc-ccc-
Confidence            4311      0   11111111111111111110        00111122222111110  0011    111111 111 


Q ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 013144          323 KMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR  390 (449)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~  390 (449)
                      .|.+|.+.++.++.+...+.+...-|.++++.+|+|+..++.+.+.......+..++.|.++||.|++
T Consensus       263 ~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n  330 (459)
T KOG4686|consen  263 YPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFN  330 (459)
T ss_pred             CccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcce
Confidence            47899999999999999999999999999999999999999999999888999999999999999988

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.81  E-value=3.6e-18  Score=165.25  Aligned_cols=269  Identities=18%  Similarity=0.218  Sum_probs=207.4

Q ss_pred             hhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhh----hcCCch-HHHHHHHHHHHHHHHhhhc-c-c----hh
Q 013144          120 VAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVD----YYGGKI-IMAWGVALWSLATFLTPWA-A-D----TS  188 (449)
Q Consensus       120 ~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~d----r~Grr~-~l~~~~~~~~i~~~~~~~~-~-~----~~  188 (449)
                      ...+.+.+.+|+++..+|++..+..+..++..|+.|.++|    |+|||| .++++....+++.+++... + .    ..
T Consensus        23 ~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~  102 (428)
T PF13347_consen   23 YLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAK  102 (428)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhH
Confidence            4466677788999999999999999999999999999999    899766 5567778888887776654 2 0    13


Q ss_pred             HHHHHHHHHHHhhhhhhhhhHHHHHHhhccC-cchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhh-------CchHHHHH
Q 013144          189 LLALLAMRAVVGLAEGVALPAMNNMVARWFP-QTERARAVAIAMGGFTSGNAIGLVLSPILMSQA-------GIFGPFVI  260 (449)
Q Consensus       189 ~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~-~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~-------gwr~~f~~  260 (449)
                      ..++.+..++..++.........++..|..+ +++|.+..+.-..+..+|.++...+.+.+.+.+       +|++..++
T Consensus       103 ~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v  182 (428)
T PF13347_consen  103 LVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALV  182 (428)
T ss_pred             HHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHH
Confidence            4456777777799989889999999999997 578999999999999999877777776665432       58999998


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccCccccCCCCCCCCCchhHHHhhccccHHHHHHHHHHHHHHH
Q 013144          261 FGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGF  340 (449)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (449)
                      .+++.++..++..+..+|.+++.                     .+++++.+.+..++.+++||.++...+..++.....
T Consensus       183 ~~iv~~v~~~i~~~~~ke~~~~~---------------------~~~~~~~~~~~~~~~~~~nr~~~~l~~~~~~~~~~~  241 (428)
T PF13347_consen  183 LAIVGLVFFLITFFFVKERSVEV---------------------TEQEKKISLRDSLRSLFRNRPFRILLLAFFLQWLAF  241 (428)
T ss_pred             HHHHHHHHhhhhhheeeeccccc---------------------cccccccccccchhhhcccchHHHHHHHHHHHHhhh
Confidence            88888887777777776621111                     122333445567889999999999999999988888


Q ss_pred             HHHHHHHHHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHhHHHHHHHHHhhcc
Q 013144          341 FVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAA  419 (449)
Q Consensus       341 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (449)
                      .......+.|.+...|.+ ...+.+.....++.+++.++.++++||+|+|+         ....+.+..+++.+.+.+.
T Consensus       242 ~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~---------~~~~~~~~~~~~~~~~~~~  310 (428)
T PF13347_consen  242 ALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKK---------VYIIGLLLAALGFLLLFFL  310 (428)
T ss_pred             hhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHcccee---------ehhhhHHHHHHHHHHHHHH
Confidence            888888899999887776 55677777888889999999999999999983         3344444444444444443

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.78  E-value=2e-16  Score=149.63  Aligned_cols=280  Identities=15%  Similarity=0.092  Sum_probs=202.5

Q ss_pred             HHHHHHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcC-CchHHHHHHHHHHHHHHHhhhc
Q 013144          106 LALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYG-GKIIMAWGVALWSLATFLTPWA  184 (449)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~G-rr~~l~~~~~~~~i~~~~~~~~  184 (449)
                      ..+++.++..+++.|..+..-++.|.|..|+|.+.+...+...++++++|.++||++ +|+.+.+..++.++........
T Consensus         9 ~~~f~~f~~~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~   88 (400)
T PF03825_consen    9 LMYFLYFFAYGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFS   88 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            345555666667777888888899999999999999999999999999999999986 5778878777777777666666


Q ss_pred             cchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHH-HHHHHhhhCc---hHHHHH
Q 013144          185 ADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVL-SPILMSQAGI---FGPFVI  260 (449)
Q Consensus       185 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l-~~~l~~~~gw---r~~f~~  260 (449)
                        ++++.+++.-++..+......|...++.-+...  +++.-.|-.-...++|.+++... ++.+....++   .+.+++
T Consensus        89 --~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i  164 (400)
T PF03825_consen   89 --SSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYI  164 (400)
T ss_pred             --ccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHH
Confidence              889988888888888888888888888888874  34455566666667777666543 2333333332   345555


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccCccccCCCCCCCCCchhHHHhhccccHHHHHHHHHHHHHHH
Q 013144          261 FGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGF  340 (449)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (449)
                      .+...++..... +..|+.|.+++.                    ++..++....+..+++|+|+++...+..++.....
T Consensus       165 ~~~~~~ll~~~~-l~lp~~~~~~~~--------------------~~~~~~~~~~~~~~llk~~~~~~Fll~~~l~~~~~  223 (400)
T PF03825_consen  165 AAILSLLLAGFA-LFLPKTPPKRSA--------------------KESVKKLLGLDALKLLKNPRFLVFLLAAFLIGISH  223 (400)
T ss_pred             HHHHHHHHHHHH-HhCCCCcccccc--------------------CCCcccccchHHHHHhcCccHHHHHHHHHHHHHHH
Confidence            555544433333 334555522111                    11111112224457999999999999888888888


Q ss_pred             HHHHHHHHHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHhHHHHHHHHHhhcc
Q 013144          341 FVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAA  419 (449)
Q Consensus       341 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (449)
                      .....+.+.|+++..|.+....+...++..+..++.-...+++..|+|.+         .++.++.+..++=..++...
T Consensus       224 ~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~---------~ll~~a~~~~~vR~~l~a~~  293 (400)
T PF03825_consen  224 AAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIK---------WLLLLALVAYAVRWLLYAYF  293 (400)
T ss_pred             HHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH---------HHHHHHHHHHHHHHHHHHHh
Confidence            88999999999996337777788877777778888888889999998877         56677777777776666665

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.77  E-value=9.7e-18  Score=163.49  Aligned_cols=292  Identities=16%  Similarity=0.147  Sum_probs=229.7

Q ss_pred             HHHHHHHHHHHHHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHH
Q 013144           99 KVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLAT  178 (449)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~  178 (449)
                      ..+.++++..+...+....+...+..+.+.|+++.++.|++.+.+-++..+...+..+..-|.-|-+.+-+|++++++++
T Consensus        97 ~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgs  176 (735)
T KOG3626|consen   97 MFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGS  176 (735)
T ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHH
Confidence            34556666677777777888888999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhc--------------------c---------------------------chh--HH-HHHHHHHHHhhhhhhhhh
Q 013144          179 FLTPWA--------------------A---------------------------DTS--LL-ALLAMRAVVGLAEGVALP  208 (449)
Q Consensus       179 ~~~~~~--------------------~---------------------------~~~--~~-~l~~~r~l~G~g~g~~~~  208 (449)
                      +++++-                    +                           ..+  ++ .++++.++.|+|....++
T Consensus       177 ll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~t  256 (735)
T KOG3626|consen  177 LLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFT  256 (735)
T ss_pred             HHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCcc
Confidence            997652                    0                           000  33 577889999999999999


Q ss_pred             HHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhh-------------------CchHHHHHHHHHHHHHH
Q 013144          209 AMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQA-------------------GIFGPFVIFGLSGFLWV  269 (449)
Q Consensus       209 ~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~-------------------gwr~~f~~~~~~~~~~~  269 (449)
                      .+.+|+-|...+++-+..+|+......+|.++|.++++++...+                   -|...|++.+.+.++..
T Consensus       257 lGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a  336 (735)
T KOG3626|consen  257 LGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSA  336 (735)
T ss_pred             CCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999986522                   26777888888888888


Q ss_pred             HHHHHhcCCCCCCCCCCCHHHHHHHHHhccCc-cccCCCCCCCCCchhHHHhhccccHHHHHHHHHHHHHHHHHHHHHHH
Q 013144          270 LVWLSATSSTPDRHPQISKYELEYILREKQKP-LLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMP  348 (449)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (449)
                      +..++++++.|+..++.+.++.+....+.... ......++-+.....++++++||.+...++...+....+.++.+++|
T Consensus       337 ~p~f~fPk~lp~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~tFlP  416 (735)
T KOG3626|consen  337 VPLFFFPKELPKSQKRKRARDLHVLKTESGGAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYITFLP  416 (735)
T ss_pred             HHHHhCcccCccccccchhhhhcccccccccccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHHhhH
Confidence            87777766666554432111111111111000 00000001123345678899999999999999999999999999999


Q ss_pred             HHHHHhhCCcccchhhHhhHHHHH-HHHHHHHHHHHHHHHHHh
Q 013144          349 IYFNFVYHIDLRQASWFSAVPWSV-MAFTGYLGGLLSDMLIQR  390 (449)
Q Consensus       349 ~~~~~~~g~s~~~~~~~~~~~~~~-~~~~~~~~g~l~dr~g~~  390 (449)
                      .|++..+|.++..+..+....++. ..+|.+++|++..|+.-+
T Consensus       417 KyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~  459 (735)
T KOG3626|consen  417 KYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLS  459 (735)
T ss_pred             HHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeeccc
Confidence            999999999999999988776664 477889999999988644

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.77  E-value=1.1e-16  Score=156.70  Aligned_cols=251  Identities=12%  Similarity=0.009  Sum_probs=176.8

Q ss_pred             hhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhh----hcCC-chHHHHHHHHHHHHHHHhhhccc--h--hHHH
Q 013144          121 AIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVD----YYGG-KIIMAWGVALWSLATFLTPWAAD--T--SLLA  191 (449)
Q Consensus       121 ~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~d----r~Gr-r~~l~~~~~~~~i~~~~~~~~~~--~--~~~~  191 (449)
                      ....+.+.+|+++.++|.+..+..+.-++..|+.|.++|    |+|| |+.++++.+..+++.+++...+.  +  .+..
T Consensus        29 l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~  108 (473)
T PRK10429         29 LMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVF  108 (473)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHH
Confidence            455566778999999999999999999999999999999    6698 56677788777777666544310  1  2456


Q ss_pred             HHHHHHHHhhhhhhhhhHHHHHHhhcc-CcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhh-------hCchHHHHHHHH
Q 013144          192 LLAMRAVVGLAEGVALPAMNNMVARWF-PQTERARAVAIAMGGFTSGNAIGLVLSPILMSQ-------AGIFGPFVIFGL  263 (449)
Q Consensus       192 l~~~r~l~G~g~g~~~~~~~~~i~~~~-~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~-------~gwr~~f~~~~~  263 (449)
                      +++..++.+++.....+...++..|.. ++++|.+..++-..+.++|..+.+.+...+.+.       .||+....+.++
T Consensus       109 ~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~  188 (473)
T PRK10429        109 VCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIA  188 (473)
T ss_pred             HHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHH
Confidence            667777888888888888999999999 589999999987777777766666555443332       246666666666


Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccCccccCCCCCCCCCchhHHHhhccccHHHHHHHHHHHHHHHHHH
Q 013144          264 SGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVI  343 (449)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (449)
                      +.++..+..++..+|.+......                  .+++++.+.+..++.+++||.++...+..++........
T Consensus       189 ~~~~~~~~~~~~~~e~~~~~~~~------------------~~~~~~~~~~~~~~~~~~n~~~~~ll~~~~~~~~~~~~~  250 (473)
T PRK10429        189 FFIVSTIITLRNVHEVYSSDNQV------------------SAEGSHLTLKDIVALIYKNDQLSCLLGMALAYNIASNII  250 (473)
T ss_pred             HHHHHHHHHHcCceecCCccccc------------------cccccCCCHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence            65555555555445442211000                  001112233445667778988888888888777777777


Q ss_pred             HHHHHHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 013144          344 LSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR  390 (449)
Q Consensus       344 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~  390 (449)
                      ..+.+.|++...+ +....+.+.....++.+++.++.+++.||+|+|
T Consensus       251 ~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk  296 (473)
T PRK10429        251 NGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKSLSRR  296 (473)
T ss_pred             hhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH
Confidence            6777766665433 445566666666788899999999999999988

>PRK09848 glucuronide transporter; Provisional

Probab=99.76  E-value=3.7e-16  Score=152.17  Aligned_cols=246  Identities=11%  Similarity=0.046  Sum_probs=159.9

Q ss_pred             hhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhc----CCchHH-HHHHHHHHHHHHHhhhcc-----chhHH
Q 013144          121 AIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYY----GGKIIM-AWGVALWSLATFLTPWAA-----DTSLL  190 (449)
Q Consensus       121 ~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~----Grr~~l-~~~~~~~~i~~~~~~~~~-----~~~~~  190 (449)
                      ....+.+.+|+++.++|.+.+...+..++..++.|+++||.    |||+.. +++.+...+..++....+     ....+
T Consensus        31 l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (448)
T PRK09848         31 LLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVV  110 (448)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHH
Confidence            44567778899999999999999999999999999999996    767644 555554544444432111     01234


Q ss_pred             HHHHHHHHHhhhhhhhhhHHHHHHhhccC-cchhhHHHHHHHHhhh-----hhhHhHHHHHHHHHhhh--CchHHHHHHH
Q 013144          191 ALLAMRAVVGLAEGVALPAMNNMVARWFP-QTERARAVAIAMGGFT-----SGNAIGLVLSPILMSQA--GIFGPFVIFG  262 (449)
Q Consensus       191 ~l~~~r~l~G~g~g~~~~~~~~~i~~~~~-~~~rg~~~~~~~~~~~-----~G~~~g~~l~~~l~~~~--gwr~~f~~~~  262 (449)
                      .+++..++.+++.+...+...++..+..+ +++|.+..++-..+.+     +|..++|.+++......  +|.....+.+
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~  190 (448)
T PRK09848        111 YAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTIVLA  190 (448)
T ss_pred             HHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHH
Confidence            45556677888888888777787777764 4678887766654433     44555555554321111  1211112223


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccCccccCCCCCCCCCchhHHHhhccccHHHHHHHHHHHHHHHHH
Q 013144          263 LSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFV  342 (449)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (449)
                      +++++..++.....||+++.+                        .++......++.++|||.++...+..++.......
T Consensus       191 v~~~~~~~~~~~~~~e~~~~~------------------------~~~~~~~~~~~~l~~n~~f~~~~~~~~~~~~~~~~  246 (448)
T PRK09848        191 IAGMVLYFICFKSTRENVVRI------------------------VAQPSLKISLQTLKRNRPLFMLCIGALCVLISTFA  246 (448)
T ss_pred             HHHHHHHHHHHcCcEeccCCC------------------------ccCCCHHHHHHHHhCCchHHHHHHHHHHHHHHHHH
Confidence            333332223333333332111                        01112334577899999999988888888888888


Q ss_pred             HHHHHHHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 013144          343 ILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR  390 (449)
Q Consensus       343 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~  390 (449)
                      .....|.|+++.+|.++...++......++.+++.++.+++.||+++|
T Consensus       247 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~  294 (448)
T PRK09848        247 VSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKK  294 (448)
T ss_pred             HhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH
Confidence            888888898888887766555555444566788899999999999987

>TIGR01272 gluP glucose/galactose transporter

Probab=99.76  E-value=3.6e-16  Score=143.74  Aligned_cols=182  Identities=12%  Similarity=0.076  Sum_probs=144.1

Q ss_pred             hhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhh---------------
Q 013144          187 TSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQ---------------  251 (449)
Q Consensus       187 ~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~---------------  251 (449)
                      .+|+.++++-++.|.|.+...+..+.++++..+++++++.+++.+.++++|..+||.+++.+...               
T Consensus         8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~   87 (310)
T TIGR01272         8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAE   87 (310)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHH
Confidence            78999999999999999999999999999999999999999999999999999999999988732               


Q ss_pred             -hCchHHHHHHHHHHHHHHHHHHHh-cCCCCCCCCCCCHHHHHHHHHhccCccccCCCCCCCCCchhHHHhhccccHHHH
Q 013144          252 -AGIFGPFVIFGLSGFLWVLVWLSA-TSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSI  329 (449)
Q Consensus       252 -~gwr~~f~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (449)
                       ..|+++|++.+.+.++..+++.+. .||.+++..    ++               . .+++.  ...++.+++|.++..
T Consensus        88 ~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~~~~----~~---------------~-~~~~~--~~~~~~~~~~~~~l~  145 (310)
T TIGR01272        88 AAKVHTPYLLLAGALAVLAIIFAFLPLPELQEADV----AR---------------V-SSGDT--TQKTSAFQFTHLVLG  145 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcccc----cc---------------c-ccccc--cchhhHHhhHHHHHH
Confidence             479999997766655544443333 222111100    00               0 00000  012246778888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh--hCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 013144          330 IVANAMHSWGFFVILSWMPIYFNFV--YHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR  390 (449)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~--~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~  390 (449)
                      .+..++......+...|++.|+.+.  +|+++.+++...+....+.++|+++++++.||+++|
T Consensus       146 ~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~  208 (310)
T TIGR01272       146 ALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQG  208 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH
Confidence            8888887778999999999999864  689999999999999999999999999999999987

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.76  E-value=4.3e-16  Score=144.61  Aligned_cols=291  Identities=16%  Similarity=0.121  Sum_probs=187.6

Q ss_pred             HHHHHHHHhHhhhhhhhhhhh-hhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHH--HHH-HHh
Q 013144          106 LALALCNADRVVMSVAIVPLS-LAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWS--LAT-FLT  181 (449)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~--i~~-~~~  181 (449)
                      +.++..++.++..-+..+... ++.|++.+++|.+.++..+...+.+++.|.++||+|.||-++..+.+..  .+. +..
T Consensus        14 ~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~   93 (412)
T PF01306_consen   14 LFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIY   93 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            334444444556666655544 4589999999999999999999999999999999997775544433222  222 222


Q ss_pred             hhcc--chhH-HHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchHHH
Q 013144          182 PWAA--DTSL-LALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPF  258 (449)
Q Consensus       182 ~~~~--~~~~-~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f  258 (449)
                      .+.+  ..|. ...+++-+..|+......|+.-+++.++.  ++.+.-.|-.-+..++|.+++..++|.+.+. +-...|
T Consensus        94 v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~i-~p~~~f  170 (412)
T PF01306_consen   94 VFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFNI-NPNIIF  170 (412)
T ss_dssp             THHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeeee-CccHHH
Confidence            2220  0222 23344444455555566677777777665  4556667777788899999999999999874 556788


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccCccccCCCCCCCCCchhHHHhhccccHHHHHHHHHHHHH
Q 013144          259 VIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSW  338 (449)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (449)
                      |+....+++..++.++..|+.+++.+..+..                ..++++....+..+++|+|++|.+.+.......
T Consensus       171 wi~s~~~~il~lll~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~l~k~~~fw~~~l~v~g~~~  234 (412)
T PF01306_consen  171 WIASAAAIILLLLLLLLKPDVPPQAEVADAL----------------GAKKDKVSLKDVLSLFKMRNFWFFVLFVIGVAA  234 (412)
T ss_dssp             HHHHHHHHHHHHHHHSS---SSSSS-SSTTS----------------SS------HHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCcCchhhhhhccc----------------ccCCCCCcHHHHHHHhcchhHHHHHHHHHHHHH
Confidence            8777666666655555554444332111100                111122223456689999999999988888777


Q ss_pred             HHHHHHHHHHHHHHHhh---CCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHhHHHHHHHHH
Q 013144          339 GFFVILSWMPIYFNFVY---HIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIG  415 (449)
Q Consensus       339 ~~~~~~~~~~~~~~~~~---g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (449)
                      .+..+...++.|++..+   +.+....|++.+...+..++...+.+++.+|+|.|         ..+.++..++.+=.++
T Consensus       235 ~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k---------~~Lllag~i~~iRi~~  305 (412)
T PF01306_consen  235 IYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAK---------NLLLLAGVIMAIRIIG  305 (412)
T ss_dssp             HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH---------HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChH---------hHHHHHHHHHHHHHHH
Confidence            88888777888887643   23445678888888888899999999999999998         4555555667777777


Q ss_pred             hhcccchhH
Q 013144          416 LTAAKSPVM  424 (449)
Q Consensus       416 ~~~~~~~~~  424 (449)
                      .+..++++.
T Consensus       306 ~~~~~~~~~  314 (412)
T PF01306_consen  306 SGFATNPWV  314 (412)
T ss_dssp             HHT--SHHH
T ss_pred             HhhhcchHH
Confidence            777777764

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR00788 fbt folate/biopterin transporter

Probab=99.75  E-value=1e-16  Score=155.93  Aligned_cols=294  Identities=12%  Similarity=-0.025  Sum_probs=189.3

Q ss_pred             HHHHHHHHHHHHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcC-----CchHHHHHHHHH
Q 013144          100 VVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYG-----GKIIMAWGVALW  174 (449)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~G-----rr~~l~~~~~~~  174 (449)
                      .+.++...++..+..........+.+.+++|+++++++...+...+...+-.+ +|+++||++     ||+.++++.++.
T Consensus        27 ~~~~~~~~y~~qGl~~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~  105 (468)
T TIGR00788        27 VLAIGLQVLFVKGIAGLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLG  105 (468)
T ss_pred             HHHHHHHHHHHhhHHHHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHH
Confidence            44455556666676644445566667778999999999999999999999766 999999998     778888887776


Q ss_pred             H-HHHHHhhhccchhH-HHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHH---HHHHHHhhhhhhHhHHHHHHHHH
Q 013144          175 S-LATFLTPWAADTSL-LALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARA---VAIAMGGFTSGNAIGLVLSPILM  249 (449)
Q Consensus       175 ~-i~~~~~~~~~~~~~-~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~---~~~~~~~~~~G~~~g~~l~~~l~  249 (449)
                      + +.....+..  ++. ....+..++.+++.+...+++.++..|..+ +++...   .++.....++|.++|+.++|.+.
T Consensus       106 ~~~~~~~l~~~--~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~  182 (468)
T TIGR00788       106 SAILYGLLPGK--VSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLL  182 (468)
T ss_pred             HHHHHHhcccc--cchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHH
Confidence            3 443334433  444 344458899999999999999999999998 555443   33444445689999999999999


Q ss_pred             hhhCchHHHHHHHHHHHHHHHHHHHhcCCCCC-CCCCCCHHHHHHHHHhccCccccCCCCCCCCCchhHHHhhccccHHH
Q 013144          250 SQAGIFGPFVIFGLSGFLWVLVWLSATSSTPD-RHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWS  328 (449)
Q Consensus       250 ~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (449)
                      +.++|+..|++.+++.++..+.. +..+|++. ..++..+++..........     .....++.....++.+++|.++.
T Consensus       183 ~~~~~~~~f~~~a~l~ll~~~~~-~~~~E~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~l~~~~i~~  256 (468)
T TIGR00788       183 DKTLTRILFLITAALLLLQLFVS-NLSKERRAFVRPRIGTYLEMNMALLTLG-----VLANVKVQILGLRGAIQLLEIAK  256 (468)
T ss_pred             HhcCcchHHHHHHHHHHHHHHHH-Hhcccccccccccccccchhhhhhhhhh-----HHHHHHHHHHHHHHHHhcHHHHH
Confidence            99999999999888877764443 44455431 1111000000000000000     00000011124556677888877


Q ss_pred             HHHHHHH-HHHHHHHHHHHHHHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHhH
Q 013144          329 IIVANAM-HSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFI  407 (449)
Q Consensus       329 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~  407 (449)
                      ..+..++ ...........+ .+.++..|+++.+.|......+++.+++..+.+++.+|++.|         .++.++.+
T Consensus       257 ~l~fifl~~~~~~~~~~~~f-~~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r---------~~l~~~~~  326 (468)
T TIGR00788       257 PLIFIFLSYANLPGASGSVF-CATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYR---------LLFGVTTL  326 (468)
T ss_pred             HHHHHHHHHhhcCCCCceeE-EEEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHH---------HHHHHHHH
Confidence            6555555 221111111111 122345799999999999999988899988888888888766         44455555


Q ss_pred             HHHHHH
Q 013144          408 APGIAL  413 (449)
Q Consensus       408 ~~~~~~  413 (449)
                      ..+++.
T Consensus       327 l~~~~~  332 (468)
T TIGR00788       327 LYTLSS  332 (468)
T ss_pred             HHHHHH
Confidence            444443

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.74  E-value=1.8e-19  Score=175.76  Aligned_cols=288  Identities=16%  Similarity=0.161  Sum_probs=3.0

Q ss_pred             HHHHHHHHHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhh
Q 013144          103 MLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTP  182 (449)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~  182 (449)
                      .+++..+...+........+..+.++|+++.++.|++.+.+-++..+..++..++.+|..|-+.+-++.+++++|+++++
T Consensus         7 ~~~~~~~~q~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~   86 (539)
T PF03137_consen    7 FLCLLGLFQMMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFA   86 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHh
Confidence            34444444466667778889999999999999999999999999999999999999998888999999999999999865


Q ss_pred             hcc------------------------c------------------------hhHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 013144          183 WAA------------------------D------------------------TSLLALLAMRAVVGLAEGVALPAMNNMV  214 (449)
Q Consensus       183 ~~~------------------------~------------------------~~~~~l~~~r~l~G~g~g~~~~~~~~~i  214 (449)
                      +-.                        +                        .-++.++++.++.|+|....++.+.+|+
T Consensus        87 lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYi  166 (539)
T PF03137_consen   87 LPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYI  166 (539)
T ss_dssp             -----------------------------------------------------------------SSS------------
T ss_pred             ccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeee
Confidence            420                        0                        0145688999999999999999999999


Q ss_pred             hhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhh---------------------C-chHHHHHHHHHHHHHHHHH
Q 013144          215 ARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQA---------------------G-IFGPFVIFGLSGFLWVLVW  272 (449)
Q Consensus       215 ~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~---------------------g-wr~~f~~~~~~~~~~~~~~  272 (449)
                      -|..++++-+..+|+..+...+|.++|.++++.+...+                     | |...|++.+.+.++..+..
T Consensus       167 DDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl  246 (539)
T PF03137_consen  167 DDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPL  246 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999998875421                     2 6667777777777777766


Q ss_pred             HHhcCCCCCCCCCCCHHHHHHHHHhcc-CccccCC------CCCCCCCchhHHHhhccccHHHHHHHHHHHHHHHHHHHH
Q 013144          273 LSATSSTPDRHPQISKYELEYILREKQ-KPLLMGN------KHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILS  345 (449)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (449)
                      ++++++-|...+..+.++.++...... ......+      ...-+......+++++||.+....+...+......++.+
T Consensus       247 ~~FPk~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G~~t  326 (539)
T PF03137_consen  247 FFFPKKLPGTSERQEEKESSERKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIVSGFAT  326 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HcCCccCCCcccccchhhhhhcchhhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH
Confidence            666555554411111111110000000 0000000      112344556778999999999999999999999999999


Q ss_pred             HHHHHHHHhhCCcccchhhHhhHHHH-HHHHHHHHHHHHHHHHHHh
Q 013144          346 WMPIYFNFVYHIDLRQASWFSAVPWS-VMAFTGYLGGLLSDMLIQR  390 (449)
Q Consensus       346 ~~~~~~~~~~g~s~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~g~~  390 (449)
                      +.|.|++..++.++.+++++.....+ +.++|.+++|++.+|++-+
T Consensus       327 F~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~  372 (539)
T PF03137_consen  327 FLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLS  372 (539)
T ss_dssp             ----------------------------------------------
T ss_pred             HHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCc
Confidence            99999999999999999988876665 5678889999999998654

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PRK11462 putative transporter; Provisional

Probab=99.73  E-value=6.7e-15  Score=143.14  Aligned_cols=245  Identities=13%  Similarity=0.075  Sum_probs=177.9

Q ss_pred             hhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhh----cCCch-HHHHHHHHHHHHHHHhhhccc----hhHHH
Q 013144          121 AIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDY----YGGKI-IMAWGVALWSLATFLTPWAAD----TSLLA  191 (449)
Q Consensus       121 ~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr----~Grr~-~l~~~~~~~~i~~~~~~~~~~----~~~~~  191 (449)
                      ....+.+.+|+++..+|.+..+.-+--++.-|+.|.++||    +|||| .++++.+..+++.+++...+.    .....
T Consensus        32 l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y  111 (460)
T PRK11462         32 MMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIY  111 (460)
T ss_pred             HHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHH
Confidence            4555667889999999999999999999999999999996    78765 555676778877776654421    11556


Q ss_pred             HHHHHHHHhhhhhhhhhHHHHHHhhccC-cchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhh-------CchHHHHHHHH
Q 013144          192 LLAMRAVVGLAEGVALPAMNNMVARWFP-QTERARAVAIAMGGFTSGNAIGLVLSPILMSQA-------GIFGPFVIFGL  263 (449)
Q Consensus       192 l~~~r~l~G~g~g~~~~~~~~~i~~~~~-~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~-------gwr~~f~~~~~  263 (449)
                      +++.-++..++.......-.++..|..+ +++|.+..++...+..+|..+++.+...+.+..       ||+....+.++
T Consensus       112 ~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~i  191 (460)
T PRK11462        112 AAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSV  191 (460)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHH
Confidence            6777777888888888888999999997 789999999999999999888888776655443       47777777777


Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccCccccCCCCCCCCCchhHHHhhccccHHHHHHHHHHHHHHHHHH
Q 013144          264 SGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVI  343 (449)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (449)
                      ++++..++.+...+|.++.++                        ++.+.+..++..++||.++.+....++........
T Consensus       192 i~~i~~~i~~~~~kE~~~~~~------------------------~~~~~~~~l~~~~~Nk~~~~l~~~~~~~~~~~~~~  247 (460)
T PRK11462        192 VAFMMLAFCFFTTKERVEAPP------------------------TTTSMREDLRDIWQNDQWRIVGLLTIFNILAVCVR  247 (460)
T ss_pred             HHHHHHHHHHhcceeccCCCc------------------------cCCCHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH
Confidence            666655555554444322110                        11123346678888988877776666666665555


Q ss_pred             HHHHHHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 013144          344 LSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR  390 (449)
Q Consensus       344 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~  390 (449)
                      ......|.+...|.. ...+.+.....++++++.++++++.||+++|
T Consensus       248 ~~~~~y~~~y~~g~~-~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk  293 (460)
T PRK11462        248 GGAMMYYVTWILGTP-EVFVAFLTTYCVGNLIGSALAKPLTDWKCKV  293 (460)
T ss_pred             HhHhhhhhhhhcCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHhChH
Confidence            555555555554433 3345566677788899999999999999887

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.71  E-value=1.5e-14  Score=135.70  Aligned_cols=272  Identities=16%  Similarity=0.137  Sum_probs=213.3

Q ss_pred             hhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhh----cCCc-hHHHHHHHHHHHHHHHhhhccc----hhHHH
Q 013144          121 AIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDY----YGGK-IIMAWGVALWSLATFLTPWAAD----TSLLA  191 (449)
Q Consensus       121 ~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr----~Grr-~~l~~~~~~~~i~~~~~~~~~~----~~~~~  191 (449)
                      ++-.+.+.+|+++..+|.+..+--+--++.-|+.|.++||    +||+ +.++.+.+..++.+.++-.+++    .+...
T Consensus        35 Ll~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~y  114 (467)
T COG2211          35 LLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIY  114 (467)
T ss_pred             HHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHH
Confidence            4455667789999999999999999999999999999996    7765 4677777888888888877742    35667


Q ss_pred             HHHHHHHHhhhhhhhhhHHHHHHhhccC-cchhhHHHHHHHHhhhhhhHhHHHHHHHHHh-------hhCchHHHHHHHH
Q 013144          192 LLAMRAVVGLAEGVALPAMNNMVARWFP-QTERARAVAIAMGGFTSGNAIGLVLSPILMS-------QAGIFGPFVIFGL  263 (449)
Q Consensus       192 l~~~r~l~G~g~g~~~~~~~~~i~~~~~-~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~-------~~gwr~~f~~~~~  263 (449)
                      .++...+.+++.......-.++.+|+.+ ++||.+..++-..+.++|..+...+...+..       ..||+...++.++
T Consensus       115 a~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~v  194 (467)
T COG2211         115 ALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGV  194 (467)
T ss_pred             HHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHH
Confidence            7888899999999888888999999985 7899999999999999998777777666654       3478888888888


Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccCccccCCCCCCCCCchhHHHhhccccHHHHHHHHHHHHHHHHHH
Q 013144          264 SGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVI  343 (449)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (449)
                      ++++..+.+++-.+|.+.+....                   ++..+.+....+..+++||.+...++..++...+.+..
T Consensus       195 i~~i~~l~~~~~v~ER~~~~~~~-------------------~~~~~~~~~~~~~~~~~Nrp~~~~l~~~l~~~~~~~i~  255 (467)
T COG2211         195 IGVILLLFCFFNVKERVVETQPT-------------------KTGVKLKLKDSFLLIFKNRPLLLLLLMNLLLFIAFNIR  255 (467)
T ss_pred             HHHHHHHHHHHHhhcccCccccC-------------------cccccccHHHHHHHHHccchHHHHHHHHHHHHHHHHHH
Confidence            88888888887776665432211                   11122333345567889999999999888888888888


Q ss_pred             HHHHHHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHhHHHHHHHHHhhccc
Q 013144          344 LSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAK  420 (449)
Q Consensus       344 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (449)
                      ......|.+..+|.+.............+.+++.++..++.+|+|+|         .+...+.++..++.+++.+.+
T Consensus       256 ~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk---------~~~~~~~~~~~i~~~~~~f~~  323 (467)
T COG2211         256 GSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKK---------KLFLIGLLLLAVGYLLLYFTP  323 (467)
T ss_pred             hhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchH---------HHHHHHHHHHHHHHHHHHhhc
Confidence            88889999888888888888888888888888899999999999998         444555555555555555554

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.69  E-value=7.6e-15  Score=136.47  Aligned_cols=176  Identities=15%  Similarity=0.242  Sum_probs=144.8

Q ss_pred             HHHHHHHHHHHHHhHhhhh-hhhhhhhhhcC----CCchhhHHHHHHHHHHHHHhhccchhhhhhc-CCchHHHHHHHHH
Q 013144          101 VSMLALALALCNADRVVMS-VAIVPLSLAHG----WSRSFSGIVQSSFLWGYLVSPIAGGTLVDYY-GGKIIMAWGVALW  174 (449)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~----~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~  174 (449)
                      +..+....+..-+..+-+. ...-++..+++    .+++++.-+.++|..-.-+..+++|+++||+ |+|+++..+.+++
T Consensus        23 l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~  102 (498)
T COG3104          23 LYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILM  102 (498)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence            3445555555555544433 33444444444    9999999999999999999999999999995 9999999999999


Q ss_pred             HHHHHHhhhccchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcch--hhHHHHHHHHhhhhhhHhHHHHHHHHHhhh
Q 013144          175 SLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTE--RARAVAIAMGGFTSGNAIGLVLSPILMSQA  252 (449)
Q Consensus       175 ~i~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~--rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~  252 (449)
                      .+|.++.+.....+...++++-++.++|.|..-+...++++|.+|+++  |-..++++.++.++|..++|.+.+++.+.+
T Consensus       103 ~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~  182 (498)
T COG3104         103 AIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINY  182 (498)
T ss_pred             HHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhh
Confidence            999999887711268889999999999999999999999999998643  888999999999999999999999999999


Q ss_pred             CchHHHHHHHHHHHHHHHHHHHhc
Q 013144          253 GIFGPFVIFGLSGFLWVLVWLSAT  276 (449)
Q Consensus       253 gwr~~f~~~~~~~~~~~~~~~~~~  276 (449)
                      ||...|...++-..+.++..++..
T Consensus       183 g~~~gF~~aavGm~~gl~~f~~~~  206 (498)
T COG3104         183 GWHVGFGLAAVGMIIGLVIFLLGR  206 (498)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHcc
Confidence            999999998877766666555544

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.69  E-value=8.6e-14  Score=134.30  Aligned_cols=242  Identities=18%  Similarity=0.116  Sum_probs=186.7

Q ss_pred             hhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHH-HHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhhhHHHH
Q 013144          134 SFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAW-GVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNN  212 (449)
Q Consensus       134 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~-~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~  212 (449)
                      +..++..++..+..++..|+.|.++|+-|+||.++. ..++..+.+.+..+....+++...+.-++.-++.+.......+
T Consensus        70 s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna  149 (477)
T PF11700_consen   70 SLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNA  149 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455788899999999999999999999997765544 4445555666666653356666666677777788888899999


Q ss_pred             HHhhccCcchh--------------------------hHHHHHHHHhhhhhhHhHHHHHHHHHhh--------hCchHHH
Q 013144          213 MVARWFPQTER--------------------------ARAVAIAMGGFTSGNAIGLVLSPILMSQ--------AGIFGPF  258 (449)
Q Consensus       213 ~i~~~~~~~~r--------------------------g~~~~~~~~~~~~G~~~g~~l~~~l~~~--------~gwr~~f  258 (449)
                      ++.|..+++++                          ++..+.-.....+|.++.-.+.-.+...        .+-|..+
T Consensus       150 ~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~  229 (477)
T PF11700_consen  150 YLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAF  229 (477)
T ss_pred             HhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHH
Confidence            99999998888                          8999998888889988887776665432        2358888


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCCCC-CCHHHHHHHHHhccCccccCCCCCCCCCchhHHHhhccccHHHHHHHHHHHH
Q 013144          259 VIFGLSGFLWVLVWLSATSSTPDRHPQ-ISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHS  337 (449)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (449)
                      .+.++.-++..+..++..|+.|+.++. ....-.....               +..+..+|++.|.|.+....+..++..
T Consensus       230 ~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~---------------~~l~~t~k~~~~~~~~~~fLia~~l~~  294 (477)
T PF11700_consen  230 LIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGF---------------KRLWRTFKEIRKLRQLFLFLIAYFLYS  294 (477)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHH---------------HHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence            888888888888778887777652211 1111111000               112235667777888999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 013144          338 WGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR  390 (449)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~  390 (449)
                      -+...+......|.++.+|++..+...+.....+.+++|.++.|++.||+|.|
T Consensus       295 dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k  347 (477)
T PF11700_consen  295 DGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPK  347 (477)
T ss_pred             HHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            99999999999999999999999999999999999999999999999999987

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.68  E-value=3.2e-16  Score=126.70  Aligned_cols=137  Identities=21%  Similarity=0.366  Sum_probs=124.1

Q ss_pred             HHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccC
Q 013144          140 QSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFP  219 (449)
Q Consensus       140 ~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~  219 (449)
                      .+.+.++..++.++.|++.||+|||+.+..+..+..++.++....  ++++.+.+.+++.|++.+...+....++.|.+|
T Consensus         4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~   81 (141)
T TIGR00880         4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS--SNITVLIIARFLQGFGAAFALVAGAALIADIYP   81 (141)
T ss_pred             EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCC
Confidence            455678889999999999999999999999999999999888888  899999999999999999999999999999999


Q ss_pred             cchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHhcCC
Q 013144          220 QTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSS  278 (449)
Q Consensus       220 ~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~  278 (449)
                      +++|++..++......+|..+++.+++.+.+..+|++.|++.++..++..+...+..||
T Consensus        82 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (141)
T TIGR00880        82 PEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE  140 (141)
T ss_pred             hhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            99999999999999999999999999999998999999999888777766666665543

>TIGR00889 2A0110 nucleoside transporter

Probab=99.68  E-value=1.5e-15  Score=146.16  Aligned_cols=160  Identities=14%  Similarity=0.072  Sum_probs=133.9

Q ss_pred             hhhhhhhhcCCC--------chhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhccc--hhHH
Q 013144          121 AIVPLSLAHGWS--------RSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAAD--TSLL  190 (449)
Q Consensus       121 ~~~~l~~~~~~~--------~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~--~~~~  190 (449)
                      ..+...++.|.+        ..+.+.+.++..++..++.++.|+++||+|+|+++.++.++.+++..+......  .+++
T Consensus       230 ~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~  309 (418)
T TIGR00889       230 FGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYA  309 (418)
T ss_pred             hHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHH
Confidence            334445555544        366799999999999999999999999999999999999999988776665311  1356


Q ss_pred             HHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHH-HhhhhhhHhHHHHHHHHHhh------hCchHHHHHHHH
Q 013144          191 ALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAM-GGFTSGNAIGLVLSPILMSQ------AGIFGPFVIFGL  263 (449)
Q Consensus       191 ~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~-~~~~~G~~~g~~l~~~l~~~------~gwr~~f~~~~~  263 (449)
                      .+++.+++.|++.+...+....++.|++|+++|++++|+.+ ....+|.++||+++|.+.++      +||++.|++.++
T Consensus       310 ~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~  389 (418)
T TIGR00889       310 LLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAG  389 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence            77888999999999888999999999999999999999997 67889999999999999987      469999999888


Q ss_pred             HHHHHHHHHHHhcCCCC
Q 013144          264 SGFLWVLVWLSATSSTP  280 (449)
Q Consensus       264 ~~~~~~~~~~~~~~~~~  280 (449)
                      +.++..++.+++.+|+.
T Consensus       390 ~~~i~~~l~~~~~~~~~  406 (418)
T TIGR00889       390 YIAILAVLFMIFFKYSH  406 (418)
T ss_pred             HHHHHHHHHHHHhCCcc
Confidence            88887777777777653

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.67  E-value=2.9e-14  Score=134.13  Aligned_cols=257  Identities=14%  Similarity=0.143  Sum_probs=185.2

Q ss_pred             hHHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhh--cCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCC-chHHHHHHH
Q 013144           96 ERVKVVSMLALALALCNADRVVMSVAIVPLSLA--HGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGG-KIIMAWGVA  172 (449)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Gr-r~~l~~~~~  172 (449)
                      .+|+.+.+..+..++......++.+..-+..++  .+.+.+..||+.++..++.+++++.+|++..|.+. |+.++.+.+
T Consensus        31 t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~i  110 (488)
T KOG2325|consen   31 TNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFL  110 (488)
T ss_pred             CchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHH
Confidence            347778888888888888877777666555555  77888999999999999999999999999999997 889999999


Q ss_pred             HHHHHHHHh-hhc--cchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHH
Q 013144          173 LWSLATFLT-PWA--ADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILM  249 (449)
Q Consensus       173 ~~~i~~~~~-~~~--~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~  249 (449)
                      +..+|+++. ++.  +....+.++++|++.|+|.|. .....+|+++-...++|.++++....+..+|.++||.++..+.
T Consensus       111 i~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n-~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~  189 (488)
T KOG2325|consen  111 IAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGN-FAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFT  189 (488)
T ss_pred             HHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCccc-HHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHh
Confidence            999999987 333  223788999999999999776 6778999999888899999999999999999999999988775


Q ss_pred             hhh--C-----------chHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccCccccCCCCCCCCCchh
Q 013144          250 SQA--G-----------IFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPP  316 (449)
Q Consensus       250 ~~~--g-----------wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (449)
                      ...  |           +..+-|+.+++.++.+++..+..+|.+++..+.+.++.++..         .+.++.+..+.+
T Consensus       190 ~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~d  260 (488)
T KOG2325|consen  190 PLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGIIDKKKRSVEEEK---------SDIEKVKKPKLD  260 (488)
T ss_pred             hhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCccccccccchhhc---------cchhhhccCChh
Confidence            421  2           334667788888888887777777776554322111110000         000011111111


Q ss_pred             HHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccchhhHhhH
Q 013144          317 FRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAV  368 (449)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~  368 (449)
                      +      +..+.+.+..+...+......+..+.+....++++..++....+.
T Consensus       261 ~------~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi  306 (488)
T KOG2325|consen  261 W------VAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGI  306 (488)
T ss_pred             H------HHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhh
Confidence            1      223445555556666666666777777777788877776555444

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.66  E-value=7.3e-14  Score=125.50  Aligned_cols=244  Identities=16%  Similarity=0.120  Sum_probs=171.7

Q ss_pred             hhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhccchhHHHHHHHH
Q 013144          117 VMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMR  196 (449)
Q Consensus       117 ~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~~r  196 (449)
                      ..+|..-.+-+++|.++.|++.+........++..++.|.++||+|||+.-++.+++.+++++.- ..  ++++.++++|
T Consensus        52 LQGpY~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k-~~--~~~~~L~~GR  128 (354)
T PF05631_consen   52 LQGPYLYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTK-HS--SNYPVLLLGR  128 (354)
T ss_pred             hhcchhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH-hc--cccHHHHHHH
Confidence            34444445557899999999999999999999999999999999999999999999999998754 44  7999999999


Q ss_pred             HHHhhhhhhhhhHHHHHHh-hc----cCcchhhHHHHHHH-HhhhhhhHhHHHHHHHHHhhhCc--hHHHHHHHHHHHHH
Q 013144          197 AVVGLAEGVALPAMNNMVA-RW----FPQTERARAVAIAM-GGFTSGNAIGLVLSPILMSQAGI--FGPFVIFGLSGFLW  268 (449)
Q Consensus       197 ~l~G~g~g~~~~~~~~~i~-~~----~~~~~rg~~~~~~~-~~~~~G~~~g~~l~~~l~~~~gw--r~~f~~~~~~~~~~  268 (449)
                      ++.|++......+-.++.. |.    +|++..+..++... ...++-.+++.+++..+.+..|.  ..+|....++.++.
T Consensus       129 vlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~  208 (354)
T PF05631_consen  129 VLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVA  208 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHH
Confidence            9999999999888877664 33    34344444444444 33344456666667777776654  78888877777776


Q ss_pred             HHHHHHhcCCCCCCCCCCCHHHHHHHHHhccCccccCCCCCCCCCchhHHHhhccccHHHHHHHHHHHHHHHHHHH-HHH
Q 013144          269 VLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVIL-SWM  347 (449)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  347 (449)
                      .+++....+|+..+..+..+                    ..+.....++.+.++|+++.+.++..+.-...+.+. .|.
T Consensus       209 ~~~I~~~W~ENyg~~~~~~~--------------------~~~~~~~a~~~i~~d~ril~LG~~qslFE~smy~FVflWt  268 (354)
T PF05631_consen  209 AVLILKTWPENYGDTSSSSS--------------------LSGSFREAWRAILSDPRILLLGLIQSLFEGSMYLFVFLWT  268 (354)
T ss_pred             HHHHHhcccccCCCcccccc--------------------hHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHheeeee
Confidence            66666655655433211110                    011112345677888999888887777776666655 555


Q ss_pred             HHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHH
Q 013144          348 PIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDM  386 (449)
Q Consensus       348 ~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr  386 (449)
                      |..- .  +-....-|++++.+.+..++|+.+..++..+
T Consensus       269 PaL~-~--~~~~~P~GlIFssFM~a~MlGS~lf~~l~s~  304 (354)
T PF05631_consen  269 PALD-P--DDEELPLGLIFSSFMVAMMLGSSLFSRLLSK  304 (354)
T ss_pred             ceec-C--CCCCCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence            5543 2  1223457888888888888888777655443

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.64  E-value=1.7e-13  Score=125.10  Aligned_cols=242  Identities=14%  Similarity=0.081  Sum_probs=179.1

Q ss_pred             hhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcC-----Cch-HHHHHHHHHHHHHHHhhhc----cc-------h
Q 013144          125 LSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYG-----GKI-IMAWGVALWSLATFLTPWA----AD-------T  187 (449)
Q Consensus       125 l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~G-----rr~-~l~~~~~~~~i~~~~~~~~----~~-------~  187 (449)
                      +..|++++....+.+.+...+... ..+.+|+.+|+.+     ||. -+..|.+..+.+..+.+++    ..       +
T Consensus         6 MIvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~   84 (403)
T PF03209_consen    6 MIVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGP   84 (403)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccc
Confidence            456899999999999998887765 5888899999998     775 4455555666555554433    11       1


Q ss_pred             h-HH--HHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchH---HHHHH
Q 013144          188 S-LL--ALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFG---PFVIF  261 (449)
Q Consensus       188 ~-~~--~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~---~f~~~  261 (449)
                      . .+  ...+...+.|+|.+...+...++++|..|+++|+++.++.....-+|.+++..+.+.+.+.+.-.-   .+...
T Consensus        85 ~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~  164 (403)
T PF03209_consen   85 FWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGV  164 (403)
T ss_pred             cHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHH
Confidence            2 22  344556789999999999999999999999999999999999999999999999999887665322   22223


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccCccccCCCCCCCCCchhHHHhhccccHHHHHHHHHHHHHHHH
Q 013144          262 GLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFF  341 (449)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (449)
                      +++.++..++..+-. |++..+..                  ..+++++......++++..+|+...+.+..++...+++
T Consensus       165 a~i~~~l~~ia~wg~-E~r~~~~~------------------~~~~~~~~~f~~a~~~~~~~~~a~~f~~fl~l~t~a~~  225 (403)
T PF03209_consen  165 ALIALLLNLIALWGQ-EPRRSRRA------------------AAAERPRPPFREAWRQVWASPQARRFFVFLFLGTLAFF  225 (403)
T ss_pred             HHHHHHHHHHHHHhc-ccCCcccc------------------cCCCCCCccHHHHHHHHHhCCChhHHHHHHHHHHHHHH
Confidence            333333333333322 22111111                  01233445556678888899999998888888888888


Q ss_pred             HHHHHHHHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHH
Q 013144          342 VILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDM  386 (449)
Q Consensus       342 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr  386 (449)
                      .-...+-.|-.+++|++..+...+....+.+.+++..+.|++..|
T Consensus       226 ~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~  270 (403)
T PF03209_consen  226 MQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSR  270 (403)
T ss_pred             hhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            888999999999999999999999999999999999999988763

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.64  E-value=2.7e-14  Score=137.10  Aligned_cols=156  Identities=19%  Similarity=0.175  Sum_probs=132.1

Q ss_pred             hhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHh
Q 013144          121 AIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVG  200 (449)
Q Consensus       121 ~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G  200 (449)
                      ..+.+.++.|.  .+.++..+.+.++..++.++.|++.||+|+|+.+..+..+.+++.++.++.  ++.+.+++..++.|
T Consensus       238 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~G  313 (399)
T PRK05122        238 FITLYYAARGW--DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLA--PSPWMALIGAALTG  313 (399)
T ss_pred             HHHHHHHHccc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHH
Confidence            33444445555  345677788899999999999999999999999999999888888888777  88888888999999


Q ss_pred             hhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHhcCCCC
Q 013144          201 LAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTP  280 (449)
Q Consensus       201 ~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~  280 (449)
                      ++.+...+.....+.|..|+++|+++.+++.....+|..+++.+.+.+.+..||++.|++.+.+.++..+..++..++.+
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (399)
T PRK05122        314 FGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYRRAP  393 (399)
T ss_pred             HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            99998888888888899999999999999999999999999999999999999999999988887776666665544333

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.63  E-value=5.5e-15  Score=140.60  Aligned_cols=149  Identities=15%  Similarity=0.077  Sum_probs=128.3

Q ss_pred             hhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHH
Q 013144          120 VAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVV  199 (449)
Q Consensus       120 ~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~  199 (449)
                      ...+++.++++.++.+.+++.+.+.++..++.++.|++.||+|||+.+.++.++..++.++..+.+..+...+++..++.
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (377)
T TIGR00890       226 GLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALV  305 (377)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHH
Confidence            34455667889999999999999999999999999999999999999999999999888877776212333455667888


Q ss_pred             hhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchHHHHHHHHHHHHH
Q 013144          200 GLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLW  268 (449)
Q Consensus       200 G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~  268 (449)
                      |++.+...+....++.|.+|+++|+++.|+......+|..++|.+.+.+.+..||++.|++.+++.++.
T Consensus       306 g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~  374 (377)
T TIGR00890       306 FFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS  374 (377)
T ss_pred             HHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence            998888888888999999999999999999999999999999999999999999999999887766553

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.63  E-value=5.3e-15  Score=142.93  Aligned_cols=151  Identities=13%  Similarity=0.094  Sum_probs=131.9

Q ss_pred             hcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhh
Q 013144          128 AHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVAL  207 (449)
Q Consensus       128 ~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~  207 (449)
                      +.+.+..+.|++.++..++..++.+++|++.||+|+|+.+..+.++.+++.++.+++  ++.+.+++.+++.|++.+...
T Consensus       256 ~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~--~~~~~~~~~~~l~g~~~~~~~  333 (420)
T PRK09528        256 TPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFA--TGPLEVSILKLLHAFEVPFLL  333 (420)
T ss_pred             ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHH
Confidence            346677789999999999999999999999999999999999999999998888888  899999999999999998888


Q ss_pred             hHHHHHHhhccCcchhhHHHHH-HHHhhhhhhHhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHhcCCCC
Q 013144          208 PAMNNMVARWFPQTERARAVAI-AMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTP  280 (449)
Q Consensus       208 ~~~~~~i~~~~~~~~rg~~~~~-~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~  280 (449)
                      +....++.|.+|++.|+...+. ++....+|.++++.+.|++.+..||+..|.+.+++.++..++.++..++++
T Consensus       334 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~~~  407 (420)
T PRK09528        334 VGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSGDR  407 (420)
T ss_pred             HHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            8888999999999999887665 667788999999999999999999999999988887766666665554433

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.62  E-value=4.2e-14  Score=135.35  Aligned_cols=153  Identities=11%  Similarity=0.014  Sum_probs=127.6

Q ss_pred             hhhhh-hhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHH
Q 013144          120 VAIVP-LSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAV  198 (449)
Q Consensus       120 ~~~~~-l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l  198 (449)
                      ...|. +++++|.++.+.+++.+...++..++.++.|+++||+|||+.+..+.+...+........  ++.+.+++.+++
T Consensus       237 ~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~l  314 (393)
T PRK15011        237 INMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMA--HSPAILLGLQLL  314 (393)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHH
Confidence            34454 456789999999999888888888899999999999999998887776666555555555  778888889999


Q ss_pred             HhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHh
Q 013144          199 VGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSA  275 (449)
Q Consensus       199 ~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~  275 (449)
                      .+++.|...+....+..|.+| ++|+++.++++...++|..+|+.+++.+.+.+||+..|++.+++.++..+..++.
T Consensus       315 ~~~~~g~~~~~~~~~~~~~~p-~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~  390 (393)
T PRK15011        315 NAIYIGILGGIGMLYFQDLMP-GQAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRI  390 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh
Confidence            999888877888888999997 5699999999999999999999999999999999999998887777766655544

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.60  E-value=4.1e-14  Score=142.68  Aligned_cols=140  Identities=17%  Similarity=0.166  Sum_probs=120.2

Q ss_pred             HHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhhhHHHHHHhh
Q 013144          137 GIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVAR  216 (449)
Q Consensus       137 g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~  216 (449)
                      .+...+..++..++.++.|+++||+|||++++++.++.+++.++.++.  ++...+++.+++.|++.+..++...++++|
T Consensus       598 ~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~--~s~~~ll~~~~l~g~~~~~~~~~~~a~~aE  675 (742)
T TIGR01299       598 YFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFG--NSESAMIALLCLFGGLSIAAWNALDVLTVE  675 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344567778999999999999999999999999999999999998888  888888888999999888889999999999


Q ss_pred             ccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHhcCCCC
Q 013144          217 WFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTP  280 (449)
Q Consensus       217 ~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~  280 (449)
                      ++|.++|++++|+..+...+|.++||++++.+.+. +...+|++.+++.++.+++.++ +||+.
T Consensus       676 l~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~ll~~~-LPET~  737 (742)
T TIGR01299       676 LYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGGLLALK-LPDTR  737 (742)
T ss_pred             HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHh-CCCCc
Confidence            99999999999999999999999999999988764 4567777777776665555554 36544

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.60  E-value=7.6e-14  Score=133.02  Aligned_cols=151  Identities=13%  Similarity=0.021  Sum_probs=134.2

Q ss_pred             hhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhccchhHHHHHHHH
Q 013144          117 VMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMR  196 (449)
Q Consensus       117 ~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~~r  196 (449)
                      .+....|.+.+++|.++.++|++.+...++..++.++.+++.||+|+|+.+.++.++..+..++.++.  ++.+.+++.+
T Consensus       223 ~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~q  300 (382)
T TIGR00902       223 AYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAI--EAFPLIFLLQ  300 (382)
T ss_pred             HHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhH--hhHHHHHHHH
Confidence            34445566667799999999999999999999999999999999999999999999999999999888  9999999999


Q ss_pred             HHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHH-HhhhhhhHhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHH
Q 013144          197 AVVGLAEGVALPAMNNMVARWFPQTERARAVAIAM-GGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLV  271 (449)
Q Consensus       197 ~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~-~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~  271 (449)
                      +++|+..|...+....++.+. |+++|+...++++ ...++|..+|+.++|.+.+++|+ ..|++.++++++..++
T Consensus       301 ~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~  374 (382)
T TIGR00902       301 ILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL  374 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence            999999999999999999998 9999999999986 57789999999999999999986 6677777777655443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.60  E-value=4.2e-14  Score=136.12  Aligned_cols=156  Identities=19%  Similarity=0.133  Sum_probs=130.4

Q ss_pred             hhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhccchhHHHHHHHHH
Q 013144          118 MSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRA  197 (449)
Q Consensus       118 ~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~  197 (449)
                      .....|.+.++.|.++.+.+++.+.+.++..++.++.|++.||+|||+.+..+.+..+++.++..+.  ++.+.+.+..+
T Consensus       239 ~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  316 (406)
T PRK11551        239 LLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAA--PSFAGMLLAGF  316 (406)
T ss_pred             HHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc--CcHHHHHHHHH
Confidence            3344677777889999999999999999999999999999999999999988777777777766666  77788888888


Q ss_pred             HHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhC-chHHHHHHHHHHHHHHHHHHHh
Q 013144          198 VVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG-IFGPFVIFGLSGFLWVLVWLSA  275 (449)
Q Consensus       198 l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~g-wr~~f~~~~~~~~~~~~~~~~~  275 (449)
                      +.|++.+...+...+++.|.+|+++|++.+|+.+....+|..+||.++|.+.++.+ |...++..+...++..+..++.
T Consensus       317 ~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (406)
T PRK11551        317 AAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLL  395 (406)
T ss_pred             HHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            99998888888999999999999999999999999999999999999999988754 5556666555555554544444

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.60  E-value=1.9e-13  Score=134.62  Aligned_cols=165  Identities=13%  Similarity=0.126  Sum_probs=124.2

Q ss_pred             hhhhhhhhhh-hhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHH-hhhccchhHHHHHH
Q 013144          117 VMSVAIVPLS-LAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFL-TPWAADTSLLALLA  194 (449)
Q Consensus       117 ~~~~~~~~l~-~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~-~~~~~~~~~~~l~~  194 (449)
                      ......|.+. +++|.+..+.++..+...++..++.++.|+++||+|||+++.++.++..++.+. ......++...+++
T Consensus       268 ~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (490)
T PRK10642        268 MLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFA  347 (490)
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence            3444556644 567888888888888899999999999999999999999988887654443332 11111156778888


Q ss_pred             HHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHH
Q 013144          195 MRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQA-GIFGPFVIFGLSGFLWVLVWL  273 (449)
Q Consensus       195 ~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~-gwr~~f~~~~~~~~~~~~~~~  273 (449)
                      ++++.|++.+........++.|.+|++.|+.++++......++..++|.+.+++.+.. +|+.++++..+.+++.++..+
T Consensus       348 ~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~  427 (490)
T PRK10642        348 GLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGV  427 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH
Confidence            9999999888777788889999999999999999855556666788999999888765 478777776666666555544


Q ss_pred             HhcCCCCCC
Q 013144          274 SATSSTPDR  282 (449)
Q Consensus       274 ~~~~~~~~~  282 (449)
                      + .||+|++
T Consensus       428 ~-~pes~~~  435 (490)
T PRK10642        428 T-MKETANR  435 (490)
T ss_pred             H-hccccCC
Confidence            4 4777654

>PRK12382 putative transporter; Provisional

Probab=99.59  E-value=1.1e-13  Score=132.56  Aligned_cols=152  Identities=18%  Similarity=0.217  Sum_probs=130.9

Q ss_pred             hhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHh
Q 013144          121 AIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVG  200 (449)
Q Consensus       121 ~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G  200 (449)
                      ..+...++.+.+  +.++..+.+.++..+++++.|++.||+|+|+.+..+..+.+++.++..+.  ++.+.+++..++.|
T Consensus       238 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~g  313 (392)
T PRK12382        238 FVSLYFASKGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLA--PTAWVALAGAALTG  313 (392)
T ss_pred             HHHHHHHhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHc--ccHHHHHHHHHHHH
Confidence            344444555654  35667777888889999999999999999999999999999988888777  78888888999999


Q ss_pred             hhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHhc
Q 013144          201 LAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSAT  276 (449)
Q Consensus       201 ~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~  276 (449)
                      ++.+...+...+.+.|.+|+++||++.++.+....+|..+||.+.+.+.++.||++.|++.+++.++..++.++..
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  389 (392)
T PRK12382        314 AGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTILSF  389 (392)
T ss_pred             HHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhhc
Confidence            9999888888899999999999999999999999999999999999999999999999998888777666665543

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.58  E-value=3.7e-14  Score=136.61  Aligned_cols=156  Identities=17%  Similarity=0.149  Sum_probs=130.8

Q ss_pred             hhhhhhhhhhcCCCch----hhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhccchhHHHHHH
Q 013144          119 SVAIVPLSLAHGWSRS----FSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLA  194 (449)
Q Consensus       119 ~~~~~~l~~~~~~~~~----~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~  194 (449)
                      .+..+.+..+.+.+..    ..+.+.++..++..++.+..|++.||+|||+.+..+..+..++.+...+.  ++.+.+++
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  316 (408)
T PRK09874        239 APILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFV--QTPLQLGI  316 (408)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHh--ccHHHHHH
Confidence            3444444444332322    34666677788888999999999999999999999999888888777777  78888899


Q ss_pred             HHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHH
Q 013144          195 MRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLS  274 (449)
Q Consensus       195 ~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~  274 (449)
                      .+++.|++.+...+...+++.+..|+++||+.+++......+|..+||.+++.+.+..||++.|++.+++.++..+..++
T Consensus       317 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~  396 (408)
T PRK09874        317 LRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWN  396 (408)
T ss_pred             HHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999998888777666655


Q ss_pred             hc
Q 013144          275 AT  276 (449)
Q Consensus       275 ~~  276 (449)
                      ..
T Consensus       397 ~~  398 (408)
T PRK09874        397 SL  398 (408)
T ss_pred             HH
Confidence            44

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.58  E-value=8.5e-14  Score=130.97  Aligned_cols=163  Identities=25%  Similarity=0.327  Sum_probs=144.8

Q ss_pred             HHHHHhHhhhhhhhhhhhhhc-CCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCch-HHHHHHHHHHHHHHHhhhccc
Q 013144          109 ALCNADRVVMSVAIVPLSLAH-GWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKI-IMAWGVALWSLATFLTPWAAD  186 (449)
Q Consensus       109 ~~~~~~~~~~~~~~~~l~~~~-~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~-~l~~~~~~~~i~~~~~~~~~~  186 (449)
                      +.............+.+.++. |.++.+.++..+...++..++.++.|++.||+|||+ .+..+..+..++.++....  
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--  262 (352)
T cd06174         185 FLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALA--  262 (352)
T ss_pred             HHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh--
Confidence            333344444555566666554 899999999999999999999999999999999999 9999999999999999888  


Q ss_pred             hhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchHHHHHHHHHHH
Q 013144          187 TSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGF  266 (449)
Q Consensus       187 ~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~  266 (449)
                      ++.+.+++..++.|++.+...+....++.|..|+++|++.+++......+|..+++.+.+.+.+..+|++.+++.+++.+
T Consensus       263 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~  342 (352)
T cd06174         263 PSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALAL  342 (352)
T ss_pred             ccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHH
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999988887


Q ss_pred             HHHHHHH
Q 013144          267 LWVLVWL  273 (449)
Q Consensus       267 ~~~~~~~  273 (449)
                      +..+...
T Consensus       343 i~~i~~~  349 (352)
T cd06174         343 LAALLLL  349 (352)
T ss_pred             HHHHHhe
Confidence            7666543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.57  E-value=1.6e-13  Score=132.57  Aligned_cols=161  Identities=14%  Similarity=0.060  Sum_probs=139.2

Q ss_pred             hhhhhhhhhh-cCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhccchhHHHHHHHHH
Q 013144          119 SVAIVPLSLA-HGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRA  197 (449)
Q Consensus       119 ~~~~~~l~~~-~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~  197 (449)
                      ....|.+.++ +|.++.+.|++.+...++..++.++.+++.||.++++.+..+.++.+++.++..+.  ++.+.+.++.+
T Consensus       243 ~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  320 (417)
T PRK10489        243 RVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLM--PMWILAVLCLA  320 (417)
T ss_pred             HHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHcc--chHHHHHHHHH
Confidence            3445666566 89999999999999999999999999999999888888888888888888887777  88888888899


Q ss_pred             HHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHhcC
Q 013144          198 VVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATS  277 (449)
Q Consensus       198 l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~  277 (449)
                      +.|++.+...+...+++.|..|++.||++++++.....+|..+|+.+.|.+.+..|++..+++.+...++..++.....+
T Consensus       321 ~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  400 (417)
T PRK10489        321 LFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLG  400 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhcc
Confidence            99999888788888999999999999999999999999999999999999999999999998888777666666666555


Q ss_pred             CCCC
Q 013144          278 STPD  281 (449)
Q Consensus       278 ~~~~  281 (449)
                      +.++
T Consensus       401 ~~~~  404 (417)
T PRK10489        401 ELRR  404 (417)
T ss_pred             cccc
Confidence            5443

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.56  E-value=2.9e-13  Score=128.78  Aligned_cols=148  Identities=13%  Similarity=0.048  Sum_probs=126.7

Q ss_pred             hhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhh
Q 013144          124 PLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAE  203 (449)
Q Consensus       124 ~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~g~  203 (449)
                      .+.+++|.++.+.+++.+...+...++.++.|++.||+|||+++.++.++..+......+.  ++.+.+++.+++.|++.
T Consensus       225 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~  302 (375)
T TIGR00899       225 LIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAAD--NSLWALLMLQLLNAIFI  302 (375)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence            3457789999999999888888888889999999999999999988887766666555566  78888888999999999


Q ss_pred             hhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHH
Q 013144          204 GVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLS  274 (449)
Q Consensus       204 g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~  274 (449)
                      +...+....++.|..|+ +++.++++......+|..++|.+++.+.+..||+..|++.++..++..++..+
T Consensus       303 g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~  372 (375)
T TIGR00899       303 GILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLL  372 (375)
T ss_pred             HHHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhe
Confidence            98888889999999874 66799999999999999999999999999999999999988877766655443

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.54  E-value=7.9e-13  Score=126.08  Aligned_cols=149  Identities=15%  Similarity=0.179  Sum_probs=124.2

Q ss_pred             hhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHh
Q 013144          121 AIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVG  200 (449)
Q Consensus       121 ~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G  200 (449)
                      .+|.+.++.|.++.+.+++.+...++..+++++.|++.||+|+|+++..+..+..++.+...    .. .......++.|
T Consensus       222 ~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~----~~-~~~~~~~~l~g  296 (381)
T PRK03633        222 LMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML----SQ-AAMAPALFILG  296 (381)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh----hh-HHHHHHHHHHH
Confidence            45666677899999999999999999999999999999999999999988888877665442    11 23345667788


Q ss_pred             hhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHH
Q 013144          201 LAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLS  274 (449)
Q Consensus       201 ~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~  274 (449)
                      ++.+...|...+++.|..|+++++...+......++|..+||.++|.+.++.||++.|++.+.+.++..+..+.
T Consensus       297 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~  370 (381)
T PRK03633        297 AAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLLR  370 (381)
T ss_pred             HHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHh
Confidence            87777889999999999998888888888888999999999999999999999999999988877765544433

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=99.54  E-value=9.6e-13  Score=125.65  Aligned_cols=305  Identities=19%  Similarity=0.164  Sum_probs=206.6

Q ss_pred             HHHHHHHHHHHHHHHHhHhhhhhhhhhhhhhcCCCch-hhHHHHH----HHHHHHHHhhccchhhhhhcCCchHHHHHHH
Q 013144           98 VKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRS-FSGIVQS----SFLWGYLVSPIAGGTLVDYYGGKIIMAWGVA  172 (449)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~g~~~s----~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~  172 (449)
                      +.+.....+-.+..++.........+...+.++.+.. ..+....    ...+...+.++..|.++||+|||..+....+
T Consensus        21 ~~~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~  100 (463)
T KOG2816|consen   21 RHLEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLPLF  100 (463)
T ss_pred             hHHHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHHH
Confidence            3444555555555555555556666666665543222 2233333    3367788899999999999999999999999


Q ss_pred             HHHHHHHHhhhccchhHHHHHHHHHHHhhhh--hhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHh
Q 013144          173 LWSLATFLTPWAADTSLLALLAMRAVVGLAE--GVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS  250 (449)
Q Consensus       173 ~~~i~~~~~~~~~~~~~~~l~~~r~l~G~g~--g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~  250 (449)
                      ...+..+...+.  . +|.++    +.|+..  +.....+.++++|....++|...+|+.......+..++|.+++.+..
T Consensus       101 ~~~l~~~~~~~~--~-~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~  173 (463)
T KOG2816|consen  101 GTILPALCLLFQ--G-YWFFL----LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVK  173 (463)
T ss_pred             HHHHhHHHHHHH--H-HHHhh----hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            999998888775  3 44444    444433  35577888999999999999999999999999999999999999999


Q ss_pred             hhCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccCccccCCCCCCCCCchhHHHhhccccHHHHH
Q 013144          251 QAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSII  330 (449)
Q Consensus       251 ~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (449)
                      ..|.-.+|.+.++..++..+..++..||+..++++.+...     ......  .....+..+.....+..-.+|..+.++
T Consensus       174 ~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~-----~~~~~~--~~~~~~~~~~~~~~~~~~~~r~~l~l~  246 (463)
T KOG2816|consen  174 FLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATL-----RELTPG--SLDSSHVADAFQSLTKVGPDRLLLLLL  246 (463)
T ss_pred             hcCchHHHHHHHHHHHHHHHHHhhccccccCccccccccc-----cccCCC--cccchhhhhhhhhhcccCCCccchHHH
Confidence            9999999999999998888888888888765543321000     000000  000001111111112222234555555


Q ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHH-HHHHHHHHhCCCchhhHHHHHHHHhHH
Q 013144          331 VANAMHSWGFFVILS-WMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGG-LLSDMLIQRGTSVTLTRKILQSIGFIA  408 (449)
Q Consensus       331 ~~~~~~~~~~~~~~~-~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g-~l~dr~g~~~~~~~~~~~~~~~~~~~~  408 (449)
                      +..++.......-.. ..+.|+...+++++.+.+.+.+.......+++++.. .+...++.+         .++..++..
T Consensus       247 l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~---------~~i~lGl~~  317 (463)
T KOG2816|consen  247 LVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEK---------RLISLGLLS  317 (463)
T ss_pred             HHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------hHhhHHHHH
Confidence            555544444333222 446778888999999999999999999999887766 677777777         366777777


Q ss_pred             HHHHHHHhhcccchhHH
Q 013144          409 PGIALIGLTAAKSPVMA  425 (449)
Q Consensus       409 ~~~~~~~~~~~~~~~~~  425 (449)
                      -.+....+.+....|..
T Consensus       318 ~~~~~~~~af~~~~w~~  334 (463)
T KOG2816|consen  318 EFLQLLLFAFATETWMM  334 (463)
T ss_pred             HHHHHHHHHHhccchhh
Confidence            77777777777666643

>PRK03545 putative arabinose transporter; Provisional

Probab=99.54  E-value=5.7e-13  Score=127.47  Aligned_cols=153  Identities=17%  Similarity=0.098  Sum_probs=126.0

Q ss_pred             hhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHH-HhhhccchhHHHHHHHHHHH
Q 013144          121 AIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATF-LTPWAADTSLLALLAMRAVV  199 (449)
Q Consensus       121 ~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~-~~~~~~~~~~~~l~~~r~l~  199 (449)
                      ..+.+.+++|.+..+.+++.+...++..++.++.|++.||+|||+.. .+..+..++.. +....  ++.+.+++..++.
T Consensus       228 ~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-~~~~~~~~~~~~l~~~~--~~~~~~~~~~~l~  304 (390)
T PRK03545        228 IEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLL-IAIALLLVCLLLLLPAA--NSEWHLSVLSIFW  304 (390)
T ss_pred             HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH-HHHHHHHHHHHHHHHHh--chHHHHHHHHHHH
Confidence            34445666899999999999999999999999999999999988754 44444444433 33445  7788888899999


Q ss_pred             hhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHhcC
Q 013144          200 GLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATS  277 (449)
Q Consensus       200 G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~  277 (449)
                      |++.+...+...+.+.+..| ++|+++++++.....+|..+||+++|.+.+++|++..|++.+++.++.++..+...+
T Consensus       305 g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  381 (390)
T PRK03545        305 GIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIFR  381 (390)
T ss_pred             HHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHcc
Confidence            99988777778888888876 688999999999999999999999999999999999999998888877776666554

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.54  E-value=2.5e-13  Score=133.04  Aligned_cols=172  Identities=17%  Similarity=0.078  Sum_probs=126.2

Q ss_pred             HHHHHHHHHHhHhhhhhhhhh-hhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhh
Q 013144          104 LALALALCNADRVVMSVAIVP-LSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTP  182 (449)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~  182 (449)
                      +++..++.+..........|. +.+++|.+..+.++..+...++..++.+++|+++||+|||+.+.....+..++..+..
T Consensus       263 ~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~  342 (467)
T PRK09556        263 LCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGV  342 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHH
Confidence            334444444443344555664 5577999999999999999999999999999999999999887765554444332222


Q ss_pred             hccchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhh-hhHhHHHHHHHHHh-----------
Q 013144          183 WAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTS-GNAIGLVLSPILMS-----------  250 (449)
Q Consensus       183 ~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~-G~~~g~~l~~~l~~-----------  250 (449)
                      +...++.+.+.+.+++.|++.............|.+|+++||.+.|+.+....+ |..++|.+.|.+.+           
T Consensus       343 ~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~  422 (467)
T PRK09556        343 YQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGY  422 (467)
T ss_pred             HHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccc
Confidence            221156667778888888654443434446777999999999999999988886 77999999999999           


Q ss_pred             -hhCchHHHHHHHHHHHHHHHHHHHh
Q 013144          251 -QAGIFGPFVIFGLSGFLWVLVWLSA  275 (449)
Q Consensus       251 -~~gwr~~f~~~~~~~~~~~~~~~~~  275 (449)
                       ..||+..|++.++..++..+..++.
T Consensus       423 ~~~~~~~~f~~~~~~~~~~~~~~~~~  448 (467)
T PRK09556        423 TLTGWAGTFAALDIAAIGCICLMAIV  448 (467)
T ss_pred             cccChHHHHHHHHHHHHHHHHHHHHH
Confidence             5789999998877766655544433

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.54  E-value=1.1e-13  Score=137.04  Aligned_cols=150  Identities=12%  Similarity=0.108  Sum_probs=119.2

Q ss_pred             hhhhhhhhh-hhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhccchhHHHHHHHH
Q 013144          118 MSVAIVPLS-LAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMR  196 (449)
Q Consensus       118 ~~~~~~~l~-~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~~r  196 (449)
                      ....+|.+. +++|.+..+.+++.+...++..++.++.|+++||+|||+++..+.++..++.++.......+.+.+.+..
T Consensus       294 ~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (496)
T PRK03893        294 IQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLL  373 (496)
T ss_pred             HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence            344566665 5899999999999999999999999999999999999999998887777665544433224455555555


Q ss_pred             HHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchHHHHHHHHHHHH
Q 013144          197 AVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFL  267 (449)
Q Consensus       197 ~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~  267 (449)
                      ++.++......+...+++.|.+|+++|++++++......+|..+||.+++.+.+..||+..+...+....+
T Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~~  444 (496)
T PRK03893        374 FFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLTF  444 (496)
T ss_pred             HHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH
Confidence            55554444445677788999999999999999999999999999999999999999999888765544433

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.53  E-value=7.4e-14  Score=136.02  Aligned_cols=152  Identities=14%  Similarity=0.061  Sum_probs=125.5

Q ss_pred             hhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhc--CCchHHHH--HHHHHHHHHHHhhhccchhHHHH
Q 013144          117 VMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYY--GGKIIMAW--GVALWSLATFLTPWAADTSLLAL  192 (449)
Q Consensus       117 ~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~--Grr~~l~~--~~~~~~i~~~~~~~~~~~~~~~l  192 (449)
                      .....++.+.+++|.+..+.+++.++..++..++.++.|+++||.  ++|+...+  +.++.+++.+++...  ++++.+
T Consensus       259 ~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~--~~~~~~  336 (455)
T TIGR00892       259 APIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALA--GDYTGL  336 (455)
T ss_pred             chHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHh--chHHHH
Confidence            334455666678899999999999999999999999999999984  34433333  334444555556666  889999


Q ss_pred             HHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHH
Q 013144          193 LAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQA-GIFGPFVIFGLSGFLWVL  270 (449)
Q Consensus       193 ~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~-gwr~~f~~~~~~~~~~~~  270 (449)
                      ++.+++.|++.+...+...+++.|.+|++++++.+++++....+|.++||.++|.+.+.. +|++.|++.+++.++..+
T Consensus       337 ~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~  415 (455)
T TIGR00892       337 VIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL  415 (455)
T ss_pred             HHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999998877 599999998877665544

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.53  E-value=9.7e-13  Score=125.87  Aligned_cols=163  Identities=15%  Similarity=0.106  Sum_probs=129.1

Q ss_pred             hhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhccchhHHHHHHHH
Q 013144          117 VMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMR  196 (449)
Q Consensus       117 ~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~~r  196 (449)
                      ......|.+.+++|.+..+.|+..+.+.++..++.++.|++.||+|||+.+..+..+..++..+....+ ++...+.  -
T Consensus       223 ~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~--~  299 (393)
T PRK09705        223 SLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLP-LQLPVLW--A  299 (393)
T ss_pred             HHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHcc-chHHHHH--H
Confidence            444456666667899999999999999999999999999999999999999998888777766554331 3322222  2


Q ss_pred             HHHhhhhhhhhhHHHHHHhhccC-cchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhC-chHHHHHHHHHHHHHHHHHHH
Q 013144          197 AVVGLAEGVALPAMNNMVARWFP-QTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG-IFGPFVIFGLSGFLWVLVWLS  274 (449)
Q Consensus       197 ~l~G~g~g~~~~~~~~~i~~~~~-~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~g-wr~~f~~~~~~~~~~~~~~~~  274 (449)
                      ++.|++.+...+.......+..+ +++|++..++.+....++..++|.+.+++.+..| |...|++.++.+++..+....
T Consensus       300 ~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  379 (393)
T PRK09705        300 MVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLR  379 (393)
T ss_pred             HHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Confidence            46688888888887777777775 5789999999999999999999999999999876 888888877777776666666


Q ss_pred             hcCCCCCC
Q 013144          275 ATSSTPDR  282 (449)
Q Consensus       275 ~~~~~~~~  282 (449)
                      ..||++.+
T Consensus       380 ~~~~~~~~  387 (393)
T PRK09705        380 FAPARFPQ  387 (393)
T ss_pred             hccccccc
Confidence            66665543

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.52  E-value=8.2e-12  Score=113.94  Aligned_cols=243  Identities=14%  Similarity=0.102  Sum_probs=183.9

Q ss_pred             CchhhHHHHHHHHHHHHHhhccchhhhhhcCCch-HHHHHHHHHHHHHHHhhhccc-hhHHHHHHHHHHHhhhhhhhhhH
Q 013144          132 SRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKI-IMAWGVALWSLATFLTPWAAD-TSLLALLAMRAVVGLAEGVALPA  209 (449)
Q Consensus       132 ~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~-~l~~~~~~~~i~~~~~~~~~~-~~~~~l~~~r~l~G~g~g~~~~~  209 (449)
                      +.+..+...++..+..++.+|+.|.++|+.|+|| .+-+...+..++..+..+.+. +.++..++.-.+..++.....+.
T Consensus        56 ~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vf  135 (438)
T COG2270          56 STAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVF  135 (438)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhhee
Confidence            3456788888999999999999999999999665 555555566666666677743 34555666778889998888999


Q ss_pred             HHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHH------------------hhhCchHHHHHHHHHHHHHHHH
Q 013144          210 MNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILM------------------SQAGIFGPFVIFGLSGFLWVLV  271 (449)
Q Consensus       210 ~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~------------------~~~gwr~~f~~~~~~~~~~~~~  271 (449)
                      -.+++.+..++++-++..++-.....+|..+.-++.-...                  +...-|.++.+.++..++..+-
T Consensus       136 yds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iP  215 (438)
T COG2270         136 YDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALP  215 (438)
T ss_pred             hhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhH
Confidence            9999999999988888888877777777766655532211                  1123677888888887777777


Q ss_pred             HHHhcCCCCCCCCCCCHHHHHHHHHhccCccccCCCCCCCCCchhHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013144          272 WLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYF  351 (449)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (449)
                      .++..++.++...... .....               .-++.+..+++..+++.+....+..++..=+.++.......|.
T Consensus       216 m~~~v~~~~~~~~~~~-~~l~~---------------g~k~L~~t~k~i~~~~~i~~FLiA~~~~~DGv~til~~~~~fg  279 (438)
T COG2270         216 MILNVHDAEKISSPPP-TALRN---------------GFKELKSTFKEIRGRKNLVLFLIARFFYIDGVNTILAMGGVFG  279 (438)
T ss_pred             HHhcccccccccccch-HHHHH---------------HHHHHHHHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            7777666654321110 00000               0011234677888888999999999999999999999999999


Q ss_pred             HHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 013144          352 NFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR  390 (449)
Q Consensus       352 ~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~  390 (449)
                      ...+|++..+..++.....+.++++.++.|++.||+|.|
T Consensus       280 ~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k  318 (438)
T COG2270         280 AADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSK  318 (438)
T ss_pred             HHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            988999999999999999999999999999999999988

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.52  E-value=5.5e-13  Score=127.66  Aligned_cols=163  Identities=17%  Similarity=0.104  Sum_probs=119.2

Q ss_pred             HHHHHHhHhhhhhhhhhh-hhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCch--HHH------HHHHHHHHHH
Q 013144          108 LALCNADRVVMSVAIVPL-SLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKI--IMA------WGVALWSLAT  178 (449)
Q Consensus       108 ~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~--~l~------~~~~~~~i~~  178 (449)
                      .+.............|.+ .+++|.++.+.+++.+...++..++.++.|++.||+|||+  ...      .+.++..+..
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (399)
T TIGR00893       224 QFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLM  303 (399)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHH
Confidence            333333444444455554 5668999999999999999999999999999999999996  111      1111111112


Q ss_pred             HHhhhccchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhC-chHH
Q 013144          179 FLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG-IFGP  257 (449)
Q Consensus       179 ~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~g-wr~~  257 (449)
                      ......  ++.+..+....+.+++.+ ..+...+++.|.+|+++|+++.++......+|..++|.+.+.+.+..| |++.
T Consensus       304 ~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~  380 (399)
T TIGR00893       304 FATNYV--NIPYAALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGA  380 (399)
T ss_pred             HHhccc--hhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHH
Confidence            222222  355555555555555555 789999999999999999999999999999999999999999999988 9999


Q ss_pred             HHHHHHHHHHHHHHHH
Q 013144          258 FVIFGLSGFLWVLVWL  273 (449)
Q Consensus       258 f~~~~~~~~~~~~~~~  273 (449)
                      |++.++..++..+..+
T Consensus       381 ~~~~~~~~~~~~~~~~  396 (399)
T TIGR00893       381 LMVVAALALIGALSYL  396 (399)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9988877766655544

>PRK03699 putative transporter; Provisional

Probab=99.52  E-value=4.6e-13  Score=128.28  Aligned_cols=156  Identities=12%  Similarity=0.088  Sum_probs=129.6

Q ss_pred             hhhhhhhhhh-hhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhccchhHHHHHHH
Q 013144          117 VMSVAIVPLS-LAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAM  195 (449)
Q Consensus       117 ~~~~~~~~l~-~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~~  195 (449)
                      .+....|.+. +++|.+..+.+++.+.+.++..++.++.|+++||+|||+.+.....+..+...+....  ++.+.+.+.
T Consensus       223 ~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~  300 (394)
T PRK03699        223 TFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNT--DDPSHLLYA  300 (394)
T ss_pred             HHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHc--CCchHHHHH
Confidence            3444556555 6789999999999999999999999999999999999999988888777776666666  777777778


Q ss_pred             HHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHh
Q 013144          196 RAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSA  275 (449)
Q Consensus       196 r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~  275 (449)
                      .++.|++.+...+...++..|..| ++++...+.......+|..++|.+.+.+.+..||+..+++.+++.++..+.+...
T Consensus       301 ~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  379 (394)
T PRK03699        301 ILGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCILL  379 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHHH
Confidence            889999888888888888888775 5567888998889999999999999999999999999998877766665544443

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.51  E-value=2e-13  Score=130.62  Aligned_cols=158  Identities=13%  Similarity=0.117  Sum_probs=122.4

Q ss_pred             HHHHHhHhhhhhhhhhhh-hhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHH--HHhhhcc
Q 013144          109 ALCNADRVVMSVAIVPLS-LAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLAT--FLTPWAA  185 (449)
Q Consensus       109 ~~~~~~~~~~~~~~~~l~-~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~--~~~~~~~  185 (449)
                      +.............|.+. +++|.++.+.++..+...++..++.++.|+++||+|||+.+..+..+..+..  ++..+..
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~  308 (394)
T TIGR00883       229 IATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLD  308 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            333333444445556554 6789999999999999999999999999999999999998776555444433  2222221


Q ss_pred             chhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHH-HHhhhhhhHhHHHHHHHHHhhhC-chHHHHHHHH
Q 013144          186 DTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIA-MGGFTSGNAIGLVLSPILMSQAG-IFGPFVIFGL  263 (449)
Q Consensus       186 ~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~-~~~~~~G~~~g~~l~~~l~~~~g-wr~~f~~~~~  263 (449)
                      .++.+.+++..++.|++.+...+...+++.|.+|+++|+++.++. .....+|..++|.+++.+.++.| |++.++..+.
T Consensus       309 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~  388 (394)
T TIGR00883       309 SGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAA  388 (394)
T ss_pred             CCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHH
Confidence            256777778889999999888999999999999999999999984 56667899999999999999988 8888777665


Q ss_pred             HHH
Q 013144          264 SGF  266 (449)
Q Consensus       264 ~~~  266 (449)
                      .++
T Consensus       389 ~~l  391 (394)
T TIGR00883       389 LAL  391 (394)
T ss_pred             HHH
Confidence            443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.51  E-value=4.3e-13  Score=131.91  Aligned_cols=181  Identities=17%  Similarity=0.108  Sum_probs=136.2

Q ss_pred             HHHHHHHHHHHHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHH
Q 013144          100 VVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATF  179 (449)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~  179 (449)
                      .+....+..+.............|.+.+++|.+..+.++......++..++.++.|+++||+|||+.+.++.++.+++.+
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~  364 (481)
T TIGR00879       285 LFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLF  364 (481)
T ss_pred             HHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            33334444443333334445566778888999998899999999999999999999999999999999999888888877


Q ss_pred             Hhhh---ccch------hHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHh
Q 013144          180 LTPW---AADT------SLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS  250 (449)
Q Consensus       180 ~~~~---~~~~------~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~  250 (449)
                      +.++   ...+      +...+....++.+.......+....++.|.+|+++|++++++......+|.++++.+.+.+.+
T Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~  444 (481)
T TIGR00879       365 VLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLE  444 (481)
T ss_pred             HHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6652   1112      333333333333333333456677788999999999999999999999999999999999999


Q ss_pred             hhCchHHHHHHHHHHHHHHHHHHHhcCCCC
Q 013144          251 QAGIFGPFVIFGLSGFLWVLVWLSATSSTP  280 (449)
Q Consensus       251 ~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~  280 (449)
                      +.||++.|++.++++++..++.++..||++
T Consensus       445 ~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~  474 (481)
T TIGR00879       445 SIGVGGVFIFFGGLNVLGLIFVYFFLPETK  474 (481)
T ss_pred             hcCccceehhHHHHHHHHHHHHheecccCC
Confidence            999999999988888877777666665544

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00897 2A0118 polyol permease family

Probab=99.50  E-value=1.7e-12  Score=124.65  Aligned_cols=160  Identities=13%  Similarity=0.109  Sum_probs=123.7

Q ss_pred             hHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHH-HHHHHHHHHHHHhhhc---cchhH
Q 013144          114 DRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMA-WGVALWSLATFLTPWA---ADTSL  189 (449)
Q Consensus       114 ~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~-~~~~~~~i~~~~~~~~---~~~~~  189 (449)
                      .........|.+.+++|.+..+.+++.+...++..++.+..|+++||+|||+.+. .+.+..+++.+.+.+.   ..++.
T Consensus       237 ~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~  316 (402)
T TIGR00897       237 GLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSF  316 (402)
T ss_pred             HHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcH
Confidence            3334445667777889999999999999999999999999999999999988764 3333333333332221   11467


Q ss_pred             HHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchHHHHHHHHHHHHHH
Q 013144          190 LALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWV  269 (449)
Q Consensus       190 ~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~  269 (449)
                      +.+++..++.|++.+...+ ....+.|..| ++||++.|+.+....+|..++|.+++.+.+..||+..|++.+++.++..
T Consensus       317 ~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~  394 (402)
T TIGR00897       317 AVALIIAIALGIFLAGYVP-LAAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSA  394 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence            7777888999998887555 4566777654 6899999999999999999999999999999999999999888877766


Q ss_pred             HHHHHh
Q 013144          270 LVWLSA  275 (449)
Q Consensus       270 ~~~~~~  275 (449)
                      ++..+.
T Consensus       395 ~~~~~~  400 (402)
T TIGR00897       395 FLTAFI  400 (402)
T ss_pred             HHHHHh
Confidence            655543

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.49  E-value=2.4e-12  Score=124.89  Aligned_cols=162  Identities=14%  Similarity=-0.065  Sum_probs=112.9

Q ss_pred             hhhhhhhhhhh-hhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhc--CCchHH-HHHHHHHHHHHHHhhhccchhHHH
Q 013144          116 VVMSVAIVPLS-LAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYY--GGKIIM-AWGVALWSLATFLTPWAADTSLLA  191 (449)
Q Consensus       116 ~~~~~~~~~l~-~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~--Grr~~l-~~~~~~~~i~~~~~~~~~~~~~~~  191 (449)
                      .......|.+. +++|.+..+.++..+.+.++..++.++.|+++||+  ++|+.. ....+...+........+..+...
T Consensus       260 ~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (434)
T PRK11663        260 AAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPFASYVM  339 (434)
T ss_pred             HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcccccHHH
Confidence            34444455554 67899999999999999999999999999999999  333322 221111111111111111134444


Q ss_pred             HHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHH
Q 013144          192 LLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLV  271 (449)
Q Consensus       192 l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~  271 (449)
                      +.+..+..|++...........+.|.+|+++|+.++|+.+....+|.+++|.+.+.+.+..||+..|++.++++++..+.
T Consensus       340 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~  419 (434)
T PRK11663        340 QAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALL  419 (434)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence            44444555554333233345667899999999999999999999999999999999999999999999998888777666


Q ss_pred             HHHhcC
Q 013144          272 WLSATS  277 (449)
Q Consensus       272 ~~~~~~  277 (449)
                      .++..+
T Consensus       420 ~~~~~~  425 (434)
T PRK11663        420 LLPFLN  425 (434)
T ss_pred             HHHHHh
Confidence            655543

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.48  E-value=3.1e-12  Score=121.96  Aligned_cols=145  Identities=19%  Similarity=0.081  Sum_probs=123.9

Q ss_pred             hhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHh
Q 013144          121 AIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVG  200 (449)
Q Consensus       121 ~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G  200 (449)
                      ..+.+.++.|.++.+.|++.+...++..+..++.|++.||+|+|+.+..+.++.+++.++.+..  ++.+.+++..++.|
T Consensus       227 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~g  304 (382)
T PRK11128        227 FSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGST--TALPWLIVIQILHC  304 (382)
T ss_pred             HHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHH
Confidence            3345556789999999999999999999999999999999999999999999999988888888  89999999999999


Q ss_pred             hhhhhhhhHHHHHHhhccCcchhhHHHHHHH-HhhhhhhHhHHHHHHHHHhhhCchHHHHHHHHHHHHHH
Q 013144          201 LAEGVALPAMNNMVARWFPQTERARAVAIAM-GGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWV  269 (449)
Q Consensus       201 ~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~-~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~  269 (449)
                      ++.+...+....++.+. +++++++..++.. ....+|..+||.++|.+.+.+|+ ..|+..+++.++.+
T Consensus       305 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~~  372 (382)
T PRK11128        305 GTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPAL  372 (382)
T ss_pred             HHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHH
Confidence            99999899999999887 5677789999886 55678889999999999999887 46666666555443

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.46  E-value=2.4e-12  Score=125.58  Aligned_cols=159  Identities=11%  Similarity=0.004  Sum_probs=111.1

Q ss_pred             hhhhhhhhhh-hhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhc--CCchHH-HHHHHHHHHHHHHhhhccchhHHHH
Q 013144          117 VMSVAIVPLS-LAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYY--GGKIIM-AWGVALWSLATFLTPWAADTSLLAL  192 (449)
Q Consensus       117 ~~~~~~~~l~-~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~--Grr~~l-~~~~~~~~i~~~~~~~~~~~~~~~l  192 (449)
                      ......|.+. +++|.+..+.++....+.++..++.++.|+++||+  |||+.. .....+..++.++..+....+.+.+
T Consensus       271 ~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  350 (452)
T PRK11273        271 GILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVD  350 (452)
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHH
Confidence            3444566654 45789999999999999999999999999999999  555432 2223333333333222211345555


Q ss_pred             HHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhH-hHHHHHHHHHhhhCchHHHHHHHHHHHHHHHH
Q 013144          193 LAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNA-IGLVLSPILMSQAGIFGPFVIFGLSGFLWVLV  271 (449)
Q Consensus       193 ~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~-~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~  271 (449)
                      .++.++.|.+..........+..|.+|+++||++.|+.+....+|.. ++|.+.+.+.+..||+..|++.++.+++.++.
T Consensus       351 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~  430 (452)
T PRK11273        351 MACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVIL  430 (452)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence            55555566544333334455678999999999999999988888765 47999999999999999999888777666555


Q ss_pred             HHHh
Q 013144          272 WLSA  275 (449)
Q Consensus       272 ~~~~  275 (449)
                      ....
T Consensus       431 ~~~~  434 (452)
T PRK11273        431 LIVV  434 (452)
T ss_pred             HHHH
Confidence            4443

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.46  E-value=8.1e-13  Score=127.08  Aligned_cols=136  Identities=13%  Similarity=0.077  Sum_probs=115.3

Q ss_pred             hhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHH-HhhhccchhHHHHHHHHHHHhh
Q 013144          123 VPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATF-LTPWAADTSLLALLAMRAVVGL  201 (449)
Q Consensus       123 ~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~-~~~~~~~~~~~~l~~~r~l~G~  201 (449)
                      +.+.+++|.+..+.+++.+...++..++.++.|++.||+|||+.+.++.++..+..+ +....  ++.+.+.+..++.|+
T Consensus       263 ~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  340 (405)
T TIGR00891       263 TYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIG--ANVAVLGLGLFFQQM  340 (405)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhC--CchHHHHHHHHHHHH
Confidence            345567899999999999999999999999999999999999999888776644333 33334  677777777788888


Q ss_pred             hhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhC-chHHHHH
Q 013144          202 AEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG-IFGPFVI  260 (449)
Q Consensus       202 g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~g-wr~~f~~  260 (449)
                      ..+...+...+++.|.+|+++|++++|+......+|..++|+++|.+.++.| |+..+..
T Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~  400 (405)
T TIGR00891       341 LVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALAS  400 (405)
T ss_pred             HHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHh
Confidence            7777788888999999999999999999999999999999999999999988 8776655

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.45  E-value=7e-11  Score=116.07  Aligned_cols=155  Identities=14%  Similarity=0.060  Sum_probs=122.9

Q ss_pred             hhhhhhhhcCCCchhhHHHHH-HHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHh---hhccchhHHHHHHHH
Q 013144          121 AIVPLSLAHGWSRSFSGIVQS-SFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLT---PWAADTSLLALLAMR  196 (449)
Q Consensus       121 ~~~~l~~~~~~~~~~~g~~~s-~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~---~~~~~~~~~~l~~~r  196 (449)
                      ..|.+.+++|.+..+.+++.. ...++..++.++.|+++||+|+|+.+.++.++.+++.++.   +.. .++.+.+.+.-
T Consensus       245 ~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~-~~~~~~l~~~~  323 (491)
T PRK11010        245 TTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSIT-DKNLYSMGAAV  323 (491)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc-cccHHHHHHHH
Confidence            344556778999999999974 6678999999999999999999998877666555544332   232 14555566666


Q ss_pred             HHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHhc
Q 013144          197 AVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSAT  276 (449)
Q Consensus       197 ~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~  276 (449)
                      +++.++.|...+...++..+..+++.++...++.+....+|..+++.+.|.+.+..||+..|.+.++++++..+......
T Consensus       324 ~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~  403 (491)
T PRK11010        324 FFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCR  403 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence            77666666666777888899999999999999999999999999999999999999999999998888887766665553

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=99.44  E-value=4.5e-10  Score=104.19  Aligned_cols=304  Identities=13%  Similarity=0.067  Sum_probs=202.1

Q ss_pred             hhhhhhhhh-cCCCchhhH-HHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhccchhHHHHHHHHH
Q 013144          120 VAIVPLSLA-HGWSRSFSG-IVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRA  197 (449)
Q Consensus       120 ~~~~~l~~~-~~~~~~~~g-~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~  197 (449)
                      ...|.+.+. .|++..|+. -+.-...-.+.+..++...+.|..|.|++++++.+...+...+..+.  ++...+-+..+
T Consensus        25 fl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~--~sv~~mq~~q~  102 (412)
T PF01770_consen   25 FLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFG--TSVLAMQLMQF  102 (412)
T ss_pred             cchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH--CcHHHHHHHHH
Confidence            344555554 788888775 45556666777888889999999999999999999999999998888  99999999999


Q ss_pred             HHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhh--CchHHHHHHHHHHHHHHHHHHHh
Q 013144          198 VVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQA--GIFGPFVIFGLSGFLWVLVWLSA  275 (449)
Q Consensus       198 l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~--gwr~~f~~~~~~~~~~~~~~~~~  275 (449)
                      +.|++.+. ..+-++++-...|+++-.++.+...+..-+|..++.++|..+....  .++..+++......+..+..++ 
T Consensus       103 ~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~f-  180 (412)
T PF01770_consen  103 FYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALF-  180 (412)
T ss_pred             HHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH-
Confidence            99999886 7778888888889999999999999999999999999999887643  3455555544333333333333 


Q ss_pred             cCCCCCCCCCCCH----HH-----HHHHHHhccCc-cccCCCC-CCC-------CCchhHHHhhccccHHHHHHHHHHHH
Q 013144          276 TSSTPDRHPQISK----YE-----LEYILREKQKP-LLMGNKH-KPA-------TVIPPFRRLLSKMPTWSIIVANAMHS  337 (449)
Q Consensus       276 ~~~~~~~~~~~~~----~~-----~~~~~~~~~~~-~~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (449)
                      .|..++..-..++    .+     .+...+..+.. ....+.. .+.       ..+..+++..++|.++...+...+..
T Consensus       181 LP~~~~S~~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSlWWa~at  260 (412)
T PF01770_consen  181 LPMPKRSLFFHRKPPAEQDANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSLWWAFAT  260 (412)
T ss_pred             cCCCCcccceeccCccccccccccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence            4544432111000    00     00000000000 0000000 000       12334566778899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHh--hCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHhHHHHHHHHH
Q 013144          338 WGFFVILSWMPIYFNFV--YHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIG  415 (449)
Q Consensus       338 ~~~~~~~~~~~~~~~~~--~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (449)
                      .+++.+.++......+.  -+-...--|.+-+...+.+.++.+..|++..++.+.       ....+.+..+..+..++.
T Consensus       261 cgy~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~-------~~l~l~~~S~l~a~~L~l  333 (412)
T PF01770_consen  261 CGYYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRW-------GELALGVFSLLQAGLLFL  333 (412)
T ss_pred             hHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHH-------HHHHHHHHHHHHHHHHHH
Confidence            99988888888887775  122233346666777777788888888885555443       224445555666677777


Q ss_pred             hhcccchhHHHHHHHHHHH
Q 013144          416 LTAAKSPVMASAWLTLAIG  434 (449)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~  434 (449)
                      +...++.+......++..+
T Consensus       334 m~~t~~Iwv~Y~~yIif~~  352 (412)
T PF01770_consen  334 MSFTGNIWVCYAGYIIFRS  352 (412)
T ss_pred             HHHhhHHHHHHHHHHHHHH
Confidence            7777676655444444333

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.44  E-value=2.7e-12  Score=124.42  Aligned_cols=143  Identities=13%  Similarity=0.080  Sum_probs=108.2

Q ss_pred             hhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhccchhHHHHHHHHH
Q 013144          118 MSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRA  197 (449)
Q Consensus       118 ~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~  197 (449)
                      .....|.+.++.|.++.+.+.+.+...++..++.++.|++.||+|||+.+..+.++..+..++......++...+.+..+
T Consensus       250 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (426)
T PRK12307        250 IFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLF  329 (426)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHH
Confidence            34456766677899999999999999999999999999999999999999988887776655544331123322222222


Q ss_pred             HHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchHHHHH
Q 013144          198 VVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVI  260 (449)
Q Consensus       198 l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~  260 (449)
                      ..+++.....+..+.++.|.+|+++||+++|+......+|..++|.+.+.+.+..|+....++
T Consensus       330 ~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~~~~  392 (426)
T PRK12307        330 GLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAALTF  392 (426)
T ss_pred             HHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHHHHH
Confidence            233332333456677889999999999999999999999999999999999998887654443

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.44  E-value=6.8e-12  Score=123.59  Aligned_cols=164  Identities=18%  Similarity=0.060  Sum_probs=124.2

Q ss_pred             hhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhccchh-H-HHHHH
Q 013144          117 VMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTS-L-LALLA  194 (449)
Q Consensus       117 ~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~-~-~~l~~  194 (449)
                      ......|.+.+++|.+....++......+...++.++.|+++||+|||++++.+.++.+++.++.+.....+ . ...+.
T Consensus       289 ~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~  368 (479)
T PRK10077        289 VVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALL  368 (479)
T ss_pred             HHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHH
Confidence            334456778788898888788888888889999999999999999999999999999988887765431111 1 12233


Q ss_pred             HHHHHhhhhhh-hhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHH------hhhCchHHHHHHHHHHHH
Q 013144          195 MRAVVGLAEGV-ALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILM------SQAGIFGPFVIFGLSGFL  267 (449)
Q Consensus       195 ~r~l~G~g~g~-~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~------~~~gwr~~f~~~~~~~~~  267 (449)
                      +-++.+++.+. ..+....++.|.+|+++|+.++|+......+|.++++.+.+.+.      +..+|++.|++.++++++
T Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (479)
T PRK10077        369 SMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVL  448 (479)
T ss_pred             HHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHH
Confidence            33444444443 34678899999999999999999999999999998876665443      577899999998887777


Q ss_pred             HHHHHHHhcCCCC
Q 013144          268 WVLVWLSATSSTP  280 (449)
Q Consensus       268 ~~~~~~~~~~~~~  280 (449)
                      ..++.++..||++
T Consensus       449 ~~~~~~~~~~e~~  461 (479)
T PRK10077        449 AALFMWKFVPETK  461 (479)
T ss_pred             HHHHHHhccccCC
Confidence            7766666666544

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.44  E-value=1.1e-11  Score=114.36  Aligned_cols=165  Identities=20%  Similarity=0.209  Sum_probs=137.2

Q ss_pred             HHHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhccchh
Q 013144          109 ALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTS  188 (449)
Q Consensus       109 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~  188 (449)
                      +........++.+-|.+.+..|.+.+.++++.-+|.++..++.++.|++.|| +.|+.+.....+..+..+...+.. ++
T Consensus       222 l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~-~~  299 (394)
T COG2814         222 LFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTG-AS  299 (394)
T ss_pred             HHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhc-ch
Confidence            3334444577788899999999999999999999999999999999999999 999999888787777777665552 56


Q ss_pred             HHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchHHHHHHHHHHHHH
Q 013144          189 LLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLW  268 (449)
Q Consensus       189 ~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~  268 (449)
                      .+..++.-++.|++.+.........+++ .-++.++.+.++....+++|..+|..+||.+.+++|+....++.+++.++.
T Consensus       300 ~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a  378 (394)
T COG2814         300 PALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLA  378 (394)
T ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Confidence            6667777777888777666666666666 336899999999999999999999999999999999999999999988887


Q ss_pred             HHHHHHhc
Q 013144          269 VLVWLSAT  276 (449)
Q Consensus       269 ~~~~~~~~  276 (449)
                      .++.+...
T Consensus       379 ~~~~~~~~  386 (394)
T COG2814         379 LLLALLSA  386 (394)
T ss_pred             HHHHHHHH
Confidence            77666554

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.42  E-value=6.6e-12  Score=120.44  Aligned_cols=143  Identities=13%  Similarity=0.091  Sum_probs=124.0

Q ss_pred             CCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhhhH
Q 013144          130 GWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPA  209 (449)
Q Consensus       130 ~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~  209 (449)
                      +.+....|++.+...+...++.+..|++.||+|+|+.+.++.++.+++..+.+.+  ++.+.+++.++++|++.+.....
T Consensus       250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~~~  327 (396)
T TIGR00882       250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFA--TTALEVVILKMLHAFEVPFLLVG  327 (396)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHHH
Confidence            5566778999999999999999999999999999999999999999888877777  88998999999999998877777


Q ss_pred             HHHHHhhccCcchhhHHHHH-HHHhhhhhhHhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHH
Q 013144          210 MNNMVARWFPQTERARAVAI-AMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLS  274 (449)
Q Consensus       210 ~~~~i~~~~~~~~rg~~~~~-~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~  274 (449)
                      ...++.+..+++.++...+. .+....+|..+++.++|++.+..||+..|++.+++.++..++..+
T Consensus       328 ~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~  393 (396)
T TIGR00882       328 CFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLISVF  393 (396)
T ss_pred             HHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            77888888888888877766 667899999999999999999999999999988887776665544

>PRK09952 shikimate transporter; Provisional

Probab=99.41  E-value=1.8e-11  Score=118.81  Aligned_cols=152  Identities=11%  Similarity=0.047  Sum_probs=114.2

Q ss_pred             hhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhh
Q 013144          124 PLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWA--ADTSLLALLAMRAVVGL  201 (449)
Q Consensus       124 ~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~--~~~~~~~l~~~r~l~G~  201 (449)
                      .+.+++|.+......+.....+...++.++.|+++||+|||+++..+.++..++.+.....  ..++.+.+++..++.|+
T Consensus       276 y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  355 (438)
T PRK09952        276 YSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANI  355 (438)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            4456788888776666666777778888999999999999999888877665554333221  11345555566677788


Q ss_pred             hhhhhhhHHHHHHhhccCcchhhHHHHHHHH-hhhhhhHhHHHHHHHHHhhh--CchHHHHHHHHHHHHHHHHHHHh
Q 013144          202 AEGVALPAMNNMVARWFPQTERARAVAIAMG-GFTSGNAIGLVLSPILMSQA--GIFGPFVIFGLSGFLWVLVWLSA  275 (449)
Q Consensus       202 g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~-~~~~G~~~g~~l~~~l~~~~--gwr~~f~~~~~~~~~~~~~~~~~  275 (449)
                      +.+...+...++++|.+|.+.|+.+.++... +..+|..++|.+.+.+.+..  +|+..+...++.+++..+..+..
T Consensus       356 ~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~  432 (438)
T PRK09952        356 AHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLM  432 (438)
T ss_pred             HHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence            8888888899999999999999999888554 45589999999999998754  48888887777777666665543

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.40  E-value=4.6e-12  Score=119.96  Aligned_cols=132  Identities=17%  Similarity=0.235  Sum_probs=119.4

Q ss_pred             hhhhhhhhh-cCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhccch-hHHHHHHHHH
Q 013144          120 VAIVPLSLA-HGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADT-SLLALLAMRA  197 (449)
Q Consensus       120 ~~~~~l~~~-~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~-~~~~l~~~r~  197 (449)
                      ...|.+.++ +|.++.+.+++.+...++..++.++.+++.||+|||+.+..+.++.+++..+..+.  + +++.+++..+
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  309 (365)
T TIGR00900       232 ALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLT--PPNFPLFLVLWF  309 (365)
T ss_pred             HHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhh--chhHHHHHHHHH
Confidence            455666655 89999999999999999999999999999999999999999888888888887777  5 4888899999


Q ss_pred             HHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhC
Q 013144          198 VVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG  253 (449)
Q Consensus       198 l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~g  253 (449)
                      +.|++.+...+...+++.|..|+++|+++.++......+|..+++.++|.+.+..|
T Consensus       310 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g  365 (365)
T TIGR00900       310 AIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG  365 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999999999999999999999999999988654

>TIGR00895 2A0115 benzoate transport

Probab=99.40  E-value=3.1e-12  Score=122.62  Aligned_cols=137  Identities=21%  Similarity=0.225  Sum_probs=111.6

Q ss_pred             HHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhccchhH
Q 013144          110 LCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSL  189 (449)
Q Consensus       110 ~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~  189 (449)
                      .............|.+.+++|.++.+.+++.+...++..++.++.|++.||+|||+.+....+......++....  ++.
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  338 (398)
T TIGR00895       261 MLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTL--FSP  338 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHh--hCH
Confidence            333334444555678888899999999999999999999999999999999999955444443333333333324  677


Q ss_pred             HHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHH
Q 013144          190 LALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPIL  248 (449)
Q Consensus       190 ~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l  248 (449)
                      +.+++..++.|++.+...+...+++.|.+|+++|++++|+......+|..+||.++|.+
T Consensus       339 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       339 TLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            77888889999999999999999999999999999999999999999999999999875

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.40  E-value=2.4e-11  Score=118.74  Aligned_cols=153  Identities=20%  Similarity=0.198  Sum_probs=137.5

Q ss_pred             hhhhhhhhh-hhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhccchhHHHHHHHH
Q 013144          118 MSVAIVPLS-LAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMR  196 (449)
Q Consensus       118 ~~~~~~~l~-~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~~r  196 (449)
                      +...+|.+. +++|.++..+|++.+.+.+|..+++++.+++.+|+++++.+..+.++.+++.+..+++  ++.+..++.-
T Consensus       237 ~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~--~~~~~~~~~l  314 (524)
T PF05977_consen  237 VWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALS--PSFWLALIAL  314 (524)
T ss_pred             HHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcc--hHHHHHHHHH
Confidence            334567665 5689999999999999999999999999999999999999999999999999999999  9999999999


Q ss_pred             HHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHH
Q 013144          197 AVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVW  272 (449)
Q Consensus       197 ~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~  272 (449)
                      ++.|++.....+...+.+.+..|++.||+.++++.+....+..+|..+.|.+.+.+|.+..+.+.++..++..++.
T Consensus       315 ~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~  390 (524)
T PF05977_consen  315 FLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIA  390 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence            9999999998999999999999999999999999999999999999999999999999999888776555444443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.39  E-value=3.7e-11  Score=116.12  Aligned_cols=159  Identities=14%  Similarity=0.160  Sum_probs=137.9

Q ss_pred             HhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCc--hHHHHHHHHHHHHHHHhhh--------c
Q 013144          115 RVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGK--IIMAWGVALWSLATFLTPW--------A  184 (449)
Q Consensus       115 ~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr--~~l~~~~~~~~i~~~~~~~--------~  184 (449)
                      ..+.........+++|++..+...+.-...+..+++++++|++.||+|.|  ++++++++++.+..+...+        .
T Consensus       298 ~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~  377 (477)
T PF11700_consen  298 NTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGL  377 (477)
T ss_pred             HHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCc
Confidence            34445555666679999999999999999999999999999999999999  8888888888665555444        4


Q ss_pred             cchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhC-chHHHHHHHH
Q 013144          185 ADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG-IFGPFVIFGL  263 (449)
Q Consensus       185 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~g-wr~~f~~~~~  263 (449)
                        ++-+.+.+.-++.|+..|..++.+.++.+|+.|+++.+..+|++....-....+||.+.+.+.+..| -|+.+....+
T Consensus       378 --~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~  455 (477)
T PF11700_consen  378 --KSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLV  455 (477)
T ss_pred             --ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHH
Confidence              7888899999999999999999999999999999999999999999999999999999999999877 8999888877


Q ss_pred             HHHHHHHHHHHh
Q 013144          264 SGFLWVLVWLSA  275 (449)
Q Consensus       264 ~~~~~~~~~~~~  275 (449)
                      +.++.+++.++.
T Consensus       456 lf~~gl~ll~~v  467 (477)
T PF11700_consen  456 LFLIGLILLFFV  467 (477)
T ss_pred             HHHHHHHHHhhc
Confidence            777766665544

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK10054 putative transporter; Provisional

Probab=99.38  E-value=1.3e-11  Score=118.14  Aligned_cols=152  Identities=16%  Similarity=0.113  Sum_probs=125.0

Q ss_pred             hhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhh
Q 013144          127 LAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVA  206 (449)
Q Consensus       127 ~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~  206 (449)
                      ++.+.+....+++.+.+.+......++.|++.||+++|+.+..++.+.+++.....+.. ++.+.+++..++.|+|.+..
T Consensus       237 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~  315 (395)
T PRK10054        237 ADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSG-NSLLLWGMSAAVFTVGEIIY  315 (395)
T ss_pred             cccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcc-hHHHHHHHHHHHHHHHHHHH
Confidence            45566777888888888888888888999999999999999999988888887776531 57777788899999999988


Q ss_pred             hhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHhcCCCC
Q 013144          207 LPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTP  280 (449)
Q Consensus       207 ~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~  280 (449)
                      .|...+++.+..|++.|+++.+..+ ...+|..+||.++|.+.++.|....|++.+....+..++.+.-.+|+|
T Consensus       316 ~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (395)
T PRK10054        316 APGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLMLKGMRARP  388 (395)
T ss_pred             HhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHHhccccCc
Confidence            8999999999999999999998765 566899999999999999999999998877666665555554444433

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.38  E-value=2.1e-11  Score=116.69  Aligned_cols=150  Identities=18%  Similarity=0.121  Sum_probs=115.7

Q ss_pred             hhhhhhhhcCCCchhhHHHHHHHH-HHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhh-c---cchhHHHHHHH
Q 013144          121 AIVPLSLAHGWSRSFSGIVQSSFL-WGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPW-A---ADTSLLALLAM  195 (449)
Q Consensus       121 ~~~~l~~~~~~~~~~~g~~~s~~~-~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~-~---~~~~~~~l~~~  195 (449)
                      ..+.+.+|.|.++.++|++..... ....++.++.|++.||+|+|+.+.++.++.++..+.... .   ..++...+...
T Consensus       230 ~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (390)
T TIGR02718       230 LSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSC  309 (390)
T ss_pred             HhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHH
Confidence            345555678999999999988876 466778899999999999999998877766443332221 1   01334445555


Q ss_pred             HHHHhhhhhhhhhHHHHHHhhccCc-chhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchHHHHHHHHHHHHHHH
Q 013144          196 RAVVGLAEGVALPAMNNMVARWFPQ-TERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVL  270 (449)
Q Consensus       196 r~l~G~g~g~~~~~~~~~i~~~~~~-~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~  270 (449)
                      ..+.+++.|...+...+.+.+..++ +++++.+++.+...++|..+||.++|.+.+..||+..|++.+++.++..+
T Consensus       310 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~  385 (390)
T TIGR02718       310 SAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL  385 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence            6667777787778888887777766 78999999999999999999999999999999999999987776665443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK10504 putative transporter; Provisional

Probab=99.36  E-value=2e-11  Score=120.01  Aligned_cols=139  Identities=13%  Similarity=0.142  Sum_probs=116.2

Q ss_pred             hhhhhhhhhhhh-hcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhcc-chhHHHHH
Q 013144          116 VVMSVAIVPLSL-AHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAA-DTSLLALL  193 (449)
Q Consensus       116 ~~~~~~~~~l~~-~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~-~~~~~~l~  193 (449)
                      .......|.+.+ .+|.++.+.++....+.++..++.++.|++.||+|||+++..+.++.+++..+..+.. .++.+.+.
T Consensus       278 ~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (471)
T PRK10504        278 GMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLP  357 (471)
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHH
Confidence            344445666554 5899999999999999999999999999999999999999999998888876665532 13444555


Q ss_pred             HHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCc
Q 013144          194 AMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGI  254 (449)
Q Consensus       194 ~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gw  254 (449)
                      +..++.|++.+...+....++.+..|+++++.+.++.+....+|..+|+.+++.+.+..|+
T Consensus       358 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g~  418 (471)
T PRK10504        358 FVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFGQ  418 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            6678889999988899999999999999999999999999999999999999999887665

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.36  E-value=1.1e-11  Score=120.59  Aligned_cols=176  Identities=18%  Similarity=0.177  Sum_probs=156.5

Q ss_pred             HHHHHHHHHHHHHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcC--CchHHHHHHHHHHH
Q 013144           99 KVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYG--GKIIMAWGVALWSL  176 (449)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~G--rr~~l~~~~~~~~i  176 (449)
                      ..+..+.+...+...........+|...++++.++.+.+.+.++..+...++.++.|+++|+..  ++.+..+++++.++
T Consensus       298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl  377 (509)
T KOG2504|consen  298 PKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGL  377 (509)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHH
Confidence            4455666666667777778888899999999999999999999999999999999999999988  55688888888888


Q ss_pred             HHHHhhhccchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhC-ch
Q 013144          177 ATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG-IF  255 (449)
Q Consensus       177 ~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~g-wr  255 (449)
                      +.+.+++.  ++++.+.....+.|++.|........++.|..+.++-..+.|+...+.+++.++||+++|.+.+..| |.
T Consensus       378 ~~~~~p~~--~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~  455 (509)
T KOG2504|consen  378 ARLFLPFA--TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYD  455 (509)
T ss_pred             HHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCee
Confidence            88889999  9999999999999999999988888999999999999999999999999999999999999988877 99


Q ss_pred             HHHHHHHHHHHHHHHHHHHhc
Q 013144          256 GPFVIFGLSGFLWVLVWLSAT  276 (449)
Q Consensus       256 ~~f~~~~~~~~~~~~~~~~~~  276 (449)
                      ..|+..++..++..+++++..
T Consensus       456 ~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  456 HAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             eehhhcChHHHHHHHHHHHhH
Confidence            999998888777776655553

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.35  E-value=2.3e-11  Score=118.33  Aligned_cols=132  Identities=17%  Similarity=0.170  Sum_probs=110.6

Q ss_pred             hhhhhh-hcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHh
Q 013144          122 IVPLSL-AHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVG  200 (449)
Q Consensus       122 ~~~l~~-~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G  200 (449)
                      .+.+.+ .++ ++.+.+++.+...++..++.+++++++||+|+|+++.++.++.+++.++..+.. ++.+.+++..++.|
T Consensus       245 ~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g  322 (437)
T TIGR00792       245 QVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAG-SNLPLILVLIILAG  322 (437)
T ss_pred             hheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcc-hhHHHHHHHHHHHH
Confidence            344333 334 566778888888999999999999999999999999999998888877766652 46677788888999


Q ss_pred             hhhhhhhhHHHHHHhhccC-------cchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCch
Q 013144          201 LAEGVALPAMNNMVARWFP-------QTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIF  255 (449)
Q Consensus       201 ~g~g~~~~~~~~~i~~~~~-------~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr  255 (449)
                      ++.+...+...++++|..+       ++++|.+.|+.+....+|..+++.+.+.+.+..||.
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~~  384 (437)
T TIGR00792       323 FGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGYV  384 (437)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            9999999999999998865       456899999999999999999999999999887773

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK15075 citrate-proton symporter; Provisional

Probab=99.34  E-value=6.8e-11  Score=114.78  Aligned_cols=142  Identities=17%  Similarity=0.077  Sum_probs=104.4

Q ss_pred             Hhhhhhhhhhhhh-hcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHH-h-hhccchhHHH
Q 013144          115 RVVMSVAIVPLSL-AHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFL-T-PWAADTSLLA  191 (449)
Q Consensus       115 ~~~~~~~~~~l~~-~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~-~-~~~~~~~~~~  191 (449)
                      ........|.+.+ .+|.+..+.++....+.++..++.++.|+++||+|||+++..+.++..+.... . .....+++..
T Consensus       254 ~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (434)
T PRK15075        254 FYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFAR  333 (434)
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHH
Confidence            3344455666544 47999999999999999999999999999999999999888765544332211 1 1111145555


Q ss_pred             HHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhh-hhhhHhHHHHHHHHHhhhCchH
Q 013144          192 LLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGF-TSGNAIGLVLSPILMSQAGIFG  256 (449)
Q Consensus       192 l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~-~~G~~~g~~l~~~l~~~~gwr~  256 (449)
                      +.+..++.|++.+...+....++.|.+|+++|+.++++..... .++..++|.+.+.+.++.|+++
T Consensus       334 ~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~~  399 (434)
T PRK15075        334 MLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDKA  399 (434)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCch
Confidence            5555666777777777777788999999999999999865444 4457789999999999888653

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.34  E-value=6e-11  Score=110.59  Aligned_cols=153  Identities=14%  Similarity=0.116  Sum_probs=133.1

Q ss_pred             hhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhh
Q 013144          127 LAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVA  206 (449)
Q Consensus       127 ~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~  206 (449)
                      ++-+.++...|.+.+...+.-++.-.+..++.+|+|.|+.++++.+++.+=.++++++  ++.+.+.+.+.+.|+-.+..
T Consensus       252 ~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~--~~~~~i~~~klLH~~e~~l~  329 (412)
T PF01306_consen  252 QSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFA--TNPWVISLIKLLHALEFPLL  329 (412)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT----SHHHHHHHHHHHHHHHHHH
T ss_pred             cccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhh--cchHHHHHHHHHHHHHHHHH
Confidence            3334456789999999999999999999999999999999999999999999999999  99999999999999999999


Q ss_pred             hhHHHHHHhhccCcchhhHHHHHH-HHhhhhhhHhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 013144          207 LPAMNNMVARWFPQTERARAVAIA-MGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPD  281 (449)
Q Consensus       207 ~~~~~~~i~~~~~~~~rg~~~~~~-~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~  281 (449)
                      ......|+++.+|++..++...+. +...++|..+.+.++|.+.|+.|.+.+|++.+.+.++..++..+..+++++
T Consensus       330 lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~~  405 (412)
T PF01306_consen  330 LVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDKK  405 (412)
T ss_dssp             HHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SSS
T ss_pred             HHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCCc
Confidence            999999999999988888888774 688899999999999999999999999999999888888887777755443

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.34  E-value=1e-11  Score=122.74  Aligned_cols=164  Identities=20%  Similarity=0.066  Sum_probs=109.5

Q ss_pred             hhhhhhhhhhhhcCCCchhhHH------------HHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhc
Q 013144          117 VMSVAIVPLSLAHGWSRSFSGI------------VQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWA  184 (449)
Q Consensus       117 ~~~~~~~~l~~~~~~~~~~~g~------------~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~  184 (449)
                      ......|.+.++.|.+....+.            ......++..++.++.++++||+|||++++++.++.+++.++.++.
T Consensus       306 ~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~  385 (502)
T TIGR00887       306 GVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFA  385 (502)
T ss_pred             ccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHH
Confidence            3344467777777776543221            2334445666788889999999999999998888877776665543


Q ss_pred             cc--hhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhh----------h
Q 013144          185 AD--TSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQ----------A  252 (449)
Q Consensus       185 ~~--~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~----------~  252 (449)
                      ..  ++...+...-+...++.....+....+.+|.+|.+.|+++.++......+|.+++|.+.+++.+.          .
T Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  465 (502)
T TIGR00887       386 YNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGI  465 (502)
T ss_pred             HHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccc
Confidence            10  11111121112222222233556677889999999999999999999999999999999998873          3


Q ss_pred             CchHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 013144          253 GIFGPFVIFGLSGFLWVLVWLSATSSTPD  281 (449)
Q Consensus       253 gwr~~f~~~~~~~~~~~~~~~~~~~~~~~  281 (449)
                      ++...|++.++.+++..+.. ++.||++.
T Consensus       466 ~~~~~~~i~~~~~~~~~i~~-~~lpEt~~  493 (502)
T TIGR00887       466 WMGHVLEIFALFMFLGILFT-LLIPETKG  493 (502)
T ss_pred             cchHHHHHHHHHHHHHHHHh-eEeccCCC
Confidence            45667787777776655544 45566543

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.34  E-value=3e-11  Score=117.37  Aligned_cols=161  Identities=11%  Similarity=-0.029  Sum_probs=110.7

Q ss_pred             hhhhhhhhh-hcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHH---HHHHHhhhccchhHHHHHH
Q 013144          119 SVAIVPLSL-AHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWS---LATFLTPWAADTSLLALLA  194 (449)
Q Consensus       119 ~~~~~~l~~-~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~---i~~~~~~~~~~~~~~~l~~  194 (449)
                      ....|.+.+ ..|.++.+.++...++.++..++.++.|+++||+|+++....+..+..   ++.++.......+.+...+
T Consensus       271 ~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (438)
T TIGR00712       271 LDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMI  350 (438)
T ss_pred             HHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHHH
Confidence            334555544 478999999999999999999999999999999975442223332221   1222222221124444444


Q ss_pred             HHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhh-hHhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHH
Q 013144          195 MRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSG-NAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWL  273 (449)
Q Consensus       195 ~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G-~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~  273 (449)
                      .-++.|++.............|.+|+++|+.+.|+.+....+| .++||.+.|.+.++.||.+.|++.+...++..+..+
T Consensus       351 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~  430 (438)
T TIGR00712       351 CMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI  430 (438)
T ss_pred             HHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHH
Confidence            4455565433322333456789999999999999998887776 578999999999999999999988777777666666


Q ss_pred             HhcCCC
Q 013144          274 SATSST  279 (449)
Q Consensus       274 ~~~~~~  279 (449)
                      +..+|+
T Consensus       431 ~~~~~~  436 (438)
T TIGR00712       431 VVMIGE  436 (438)
T ss_pred             HHHhhc
Confidence            666554

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.33  E-value=5.5e-11  Score=114.46  Aligned_cols=154  Identities=14%  Similarity=0.034  Sum_probs=121.3

Q ss_pred             hhh-hhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhcc---chhHHHHHHHHH
Q 013144          122 IVP-LSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAA---DTSLLALLAMRA  197 (449)
Q Consensus       122 ~~~-l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~---~~~~~~l~~~r~  197 (449)
                      .|. +.+++|.++.+.++......++..++.++.|++.||+|+|+.+.++.++..++.++.++.+   .++++.+++.-+
T Consensus       238 ~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  317 (406)
T PRK15402        238 SPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLS  317 (406)
T ss_pred             hHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHH
Confidence            444 3567899999999998888889999999999999999999999999888877777665531   146777788889


Q ss_pred             HHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHhc
Q 013144          198 VVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSAT  276 (449)
Q Consensus       198 l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~  276 (449)
                      +.|+|.+...+......... ++++||+..+..+....+|..+|+.+++.+.+..++....+..++.+++.++......
T Consensus       318 ~~g~g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (406)
T PRK15402        318 LYAFGIGLANAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLWLLLVRIFL  395 (406)
T ss_pred             HHHHHHHHHhhhHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999988777766665444 4589999999999999999999999999998888877766665555555444444443

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.33  E-value=3.2e-11  Score=114.72  Aligned_cols=142  Identities=15%  Similarity=0.012  Sum_probs=105.3

Q ss_pred             hhhhhhhh-hhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCC-chHHH-HHH-HHHHHHHHHhhhccchhHHHH
Q 013144          117 VMSVAIVP-LSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGG-KIIMA-WGV-ALWSLATFLTPWAADTSLLAL  192 (449)
Q Consensus       117 ~~~~~~~~-l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Gr-r~~l~-~~~-~~~~i~~~~~~~~~~~~~~~l  192 (449)
                      ......|. +.+++|.++.+.++..+...++..++.++.|++.||+++ |+... ... ....++..........+.+.+
T Consensus       234 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (379)
T TIGR00881       234 GILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMD  313 (379)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHH
Confidence            33434444 456789999999999999999999999999999998643 33222 222 122222222222111456666


Q ss_pred             HHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchHHH
Q 013144          193 LAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPF  258 (449)
Q Consensus       193 ~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f  258 (449)
                      .+..++.|+......+....++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..||++.|
T Consensus       314 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f  379 (379)
T TIGR00881       314 LICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGAF  379 (379)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence            677777887666666677788999999999999999999999999999999999999999999764

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=99.33  E-value=4.5e-11  Score=104.27  Aligned_cols=152  Identities=18%  Similarity=0.098  Sum_probs=126.1

Q ss_pred             HHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHH
Q 013144           97 RVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSL  176 (449)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i  176 (449)
                      ||..+......... ....+.++..-|++++++|+|.+|...+.+...+|..+ .++.|.+.|++|++.++++|.+...+
T Consensus         1 rW~~l~a~~~v~~~-~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~   78 (250)
T PF06813_consen    1 RWLSLVASIWVQLC-SGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFV   78 (250)
T ss_pred             ChhhHHHHHHHHHh-cCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            46655555555543 34567788889999999999999999999999999987 58889999999999999999999999


Q ss_pred             HHHHhhhcc-----chhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhh
Q 013144          177 ATFLTPWAA-----DTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQ  251 (449)
Q Consensus       177 ~~~~~~~~~-----~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~  251 (449)
                      |..+...+.     ..++|.+.+..++.|.+.+...+++.....+.|| ++||.+.|+.-...+++..+-..+...+.+.
T Consensus        79 GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~  157 (250)
T PF06813_consen   79 GYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGD  157 (250)
T ss_pred             HHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCC
Confidence            988766541     2578889888899999888777887777778897 6899999999999999988887777766554

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.33  E-value=1.8e-11  Score=111.55  Aligned_cols=179  Identities=20%  Similarity=0.118  Sum_probs=144.6

Q ss_pred             HHHHHHHHHHHHHHHhHhhhhhhhhh-hhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhc--CCchHHH-HHHHHH
Q 013144           99 KVVSMLALALALCNADRVVMSVAIVP-LSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYY--GGKIIMA-WGVALW  174 (449)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~--Grr~~l~-~~~~~~  174 (449)
                      ..+.+++++++..+..++.+.--.|. +.|..|.+...+++..+.+-.+...+.+++|+++||+  |||..+. +.++..
T Consensus       252 k~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i  331 (448)
T COG2271         252 KLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLI  331 (448)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence            35667778888888888777766665 5567799999999999999999999999999999996  7776544 444444


Q ss_pred             HHHHHHhhhccchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhh-hhHhHHHHHHHHHhhhC
Q 013144          175 SLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTS-GNAIGLVLSPILMSQAG  253 (449)
Q Consensus       175 ~i~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~-G~~~g~~l~~~l~~~~g  253 (449)
                      .++.+..-+++..|+++..++-++.|+..-+..-..-....|..|++--|.+.|+.+.+..+ |.+.+....+++.+.+|
T Consensus       332 ~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~g  411 (448)
T COG2271         332 TASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWG  411 (448)
T ss_pred             HHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCC
Confidence            44455555554457788899999999988777777888889999999999999999999998 99999999999999999


Q ss_pred             chHHHHHHHHHHHHHHHHHHHhcC
Q 013144          254 IFGPFVIFGLSGFLWVLVWLSATS  277 (449)
Q Consensus       254 wr~~f~~~~~~~~~~~~~~~~~~~  277 (449)
                      |...|++..+.+++..++......
T Consensus       412 W~g~Fi~~~~~a~l~~lll~~~~~  435 (448)
T COG2271         412 WDGGFIVLSIAALLAILLLLPVWN  435 (448)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHh
Confidence            999999987777766665555543

>TIGR01272 gluP glucose/galactose transporter

Probab=99.32  E-value=1.9e-10  Score=105.88  Aligned_cols=154  Identities=16%  Similarity=0.144  Sum_probs=117.2

Q ss_pred             HHHHHHHHHhHhhhhhhhhhhhh---hcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHh
Q 013144          105 ALALALCNADRVVMSVAIVPLSL---AHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLT  181 (449)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~  181 (449)
                      .+..++............+.+.+   .+|.++.+.++..+.+..+..++.+..+++.||+|+|+++.++..+..++.++.
T Consensus       146 ~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~  225 (310)
T TIGR01272       146 ALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGA  225 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence            34444433333343433344333   368999999999999999999999999999999999999988888888877666


Q ss_pred             hhccchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchHHHHHH
Q 013144          182 PWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIF  261 (449)
Q Consensus       182 ~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~  261 (449)
                      ...  ++... ..+-++.|++.+..+|...+...+..|+ +.+.+.++. ....+|.+++|++.|.+.+..|.+..|++.
T Consensus       226 ~~~--~~~~~-~~~~~l~g~~~s~i~P~~~s~a~~~~~~-~~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~  300 (310)
T TIGR01272       226 ALT--HGYVA-MWFVLALGLFNSIMFPTIFSLALNALGR-HTSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALP  300 (310)
T ss_pred             HHc--CCHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHH
Confidence            555  44332 2355588999999999999999998864 456666765 556789999999999999999999888754


Q ss_pred             HH
Q 013144          262 GL  263 (449)
Q Consensus       262 ~~  263 (449)
                      .+
T Consensus       301 ~~  302 (310)
T TIGR01272       301 VP  302 (310)
T ss_pred             HH
Confidence            43

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.31  E-value=2.1e-10  Score=109.71  Aligned_cols=146  Identities=16%  Similarity=0.162  Sum_probs=117.7

Q ss_pred             hhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHH-HHHHHHHhhhccchhHHHHHHHHHHHh
Q 013144          122 IVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVAL-WSLATFLTPWAADTSLLALLAMRAVVG  200 (449)
Q Consensus       122 ~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~-~~i~~~~~~~~~~~~~~~l~~~r~l~G  200 (449)
                      .|.+.+++|.++.+.+++...+.++..++.++.|++.||.+ |+.++.+..+ .....++....  ++.+.+.+..++.|
T Consensus       240 ~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~-~~~l~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~l~G  316 (394)
T PRK10213        240 RPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSV-KLALAGAPLVLAVSALVLTLWG--SDKIVATGVAIIWG  316 (394)
T ss_pred             HHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHH
Confidence            46677788999999999999999999999999999999964 4444444444 33334444455  67888888899999


Q ss_pred             hhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHH
Q 013144          201 LAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLV  271 (449)
Q Consensus       201 ~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~  271 (449)
                      ++.+...+...+++.+..| +++++..++......+|..+|+.++|.+.+..|++..++..+.+.++..+.
T Consensus       317 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~  386 (394)
T PRK10213        317 LTFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLTALL  386 (394)
T ss_pred             HHHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHH
Confidence            9999989999989999887 567788888888899999999999999999999999988877665554433

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.31  E-value=1.8e-10  Score=109.95  Aligned_cols=152  Identities=14%  Similarity=0.024  Sum_probs=113.1

Q ss_pred             hhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHh
Q 013144          121 AIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVG  200 (449)
Q Consensus       121 ~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G  200 (449)
                      ..|.+.+.+|.++.+.+++.+...++..++.++.|++.||+|+|+.+..+..+.+++.++..... ++.+..++..++.+
T Consensus       222 ~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~  300 (382)
T PRK10091        222 IKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFG-GMKTASLIFAFICC  300 (382)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHH
Confidence            34556667899999999999999999999999999999999999999998888888776554321 45566666666777


Q ss_pred             hhhhhhhhHHH-HHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhh-hCchHHHHHHHHHHHHHHHHHHHh
Q 013144          201 LAEGVALPAMN-NMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQ-AGIFGPFVIFGLSGFLWVLVWLSA  275 (449)
Q Consensus       201 ~g~g~~~~~~~-~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~-~gwr~~f~~~~~~~~~~~~~~~~~  275 (449)
                      ++.....+... ....+..+++.++...  ......+|..+||.++|.+.+. .+|++.+.+.+++.++........
T Consensus       301 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (382)
T PRK10091        301 AGLFALSAPLQILLLQNAKGGELLGAAG--GQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLY  375 (382)
T ss_pred             HHHHhhhHHHHHHHHHhCCcchHHHHHH--HHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHHH
Confidence            76554444334 3444544555555543  3567889999999999999985 689999999877766555444443

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=99.28  E-value=5.5e-09  Score=104.58  Aligned_cols=157  Identities=18%  Similarity=0.243  Sum_probs=128.4

Q ss_pred             hhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhh-cCCchHHHHHHHHHHHHHHHhhhccch------hHHHH
Q 013144          120 VAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDY-YGGKIIMAWGVALWSLATFLTPWAADT------SLLAL  192 (449)
Q Consensus       120 ~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr-~Grr~~l~~~~~~~~i~~~~~~~~~~~------~~~~l  192 (449)
                      .....+.+.+|.+...+..+...+....-+.++++|.++|+ +|+++.++++.++..+|.++.++...+      .....
T Consensus         9 iLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~   88 (654)
T TIGR00926         9 ILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLD   88 (654)
T ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHH
Confidence            34445556789999999999999999999999999999997 699999999999999999887765211      12346


Q ss_pred             HHHHHHHhhhhhhhhhHHHHHHhhccCcc---hhhHHHHHHHHhhhhhhHhHHHHHHHHHhhh-------CchHHHHHHH
Q 013144          193 LAMRAVVGLAEGVALPAMNNMVARWFPQT---ERARAVAIAMGGFTSGNAIGLVLSPILMSQA-------GIFGPFVIFG  262 (449)
Q Consensus       193 ~~~r~l~G~g~g~~~~~~~~~i~~~~~~~---~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~-------gwr~~f~~~~  262 (449)
                      +++-.+..+|.|++-+...+...|-++++   +|-..+.++..+.++|+.+++++.+++.+..       +|...|.+.+
T Consensus        89 l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~  168 (654)
T TIGR00926        89 LLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPA  168 (654)
T ss_pred             HHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHH
Confidence            67788899999999999999999999754   4778899999999999999999999887443       6999999988


Q ss_pred             HHHHHHHHHHHHhc
Q 013144          263 LSGFLWVLVWLSAT  276 (449)
Q Consensus       263 ~~~~~~~~~~~~~~  276 (449)
                      +..++..++.....
T Consensus       169 i~m~ia~lvf~~g~  182 (654)
T TIGR00926       169 ILMILALIVFMAGS  182 (654)
T ss_pred             HHHHHHHHHHHHhc
Confidence            88777666655443

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.28  E-value=2e-10  Score=110.31  Aligned_cols=149  Identities=17%  Similarity=0.125  Sum_probs=109.8

Q ss_pred             hhhhhhhcCCCchhhHHHHHHH-HHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHh---hhccchhHHHHHHHH-
Q 013144          122 IVPLSLAHGWSRSFSGIVQSSF-LWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLT---PWAADTSLLALLAMR-  196 (449)
Q Consensus       122 ~~~l~~~~~~~~~~~g~~~s~~-~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~---~~~~~~~~~~l~~~r-  196 (449)
                      .+.+.+++|.++.+.+++.+.. .++..++.++.|++.||+|+|+.+.++.++..+..+..   ++.+ ++.+.+++.- 
T Consensus       233 ~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~-~~~~~~~~~~~  311 (402)
T PRK11902        233 TTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTP-KHLWTMALAIG  311 (402)
T ss_pred             HHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC-CcHHHHHHHHH
Confidence            3456677899999999998665 45688999999999999999998887777666554433   3331 3555555544 


Q ss_pred             ---HHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHH
Q 013144          197 ---AVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWL  273 (449)
Q Consensus       197 ---~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~  273 (449)
                         +..|++.+...+....++.+.+|.+++    ++.+...++|..+++.++|.+.+.+||+..|.+.++++++..++.+
T Consensus       312 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~  387 (402)
T PRK11902        312 IENLCGGMGTAAFVALLMALCNRSFSATQY----ALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLW  387 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCcHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence               456666777777888888888876654    4455556777777777899999999999999998888877655554


Q ss_pred             Hh
Q 013144          274 SA  275 (449)
Q Consensus       274 ~~  275 (449)
                      ..
T Consensus       388 ~~  389 (402)
T PRK11902        388 LM  389 (402)
T ss_pred             HH
Confidence            43

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.28  E-value=3.5e-10  Score=109.70  Aligned_cols=156  Identities=17%  Similarity=0.090  Sum_probs=101.5

Q ss_pred             hhhhhhh-hhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhh--hccchhHHHHHH
Q 013144          118 MSVAIVP-LSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTP--WAADTSLLALLA  194 (449)
Q Consensus       118 ~~~~~~~-l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~--~~~~~~~~~l~~  194 (449)
                      ....+|. +.+++|.+..+.++..++..++..++.++.|+++||+|||+.+.++.++.++..+...  ....++....+.
T Consensus       262 ~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (432)
T PRK10406        262 FTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFG  341 (432)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence            3344555 4456899998999999988888899999999999999999988777665443332111  110023333222


Q ss_pred             HHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhh-hhHhHHHHHHHHHhhhC-chHHHHHHHHHHHHHHHHH
Q 013144          195 MRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTS-GNAIGLVLSPILMSQAG-IFGPFVIFGLSGFLWVLVW  272 (449)
Q Consensus       195 ~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~-G~~~g~~l~~~l~~~~g-wr~~f~~~~~~~~~~~~~~  272 (449)
                      .-.+.+++.+...+....+++|++|++.|+.+.|+.....++ .....|.+.+.+ +..| |...+++.++..++..+..
T Consensus       342 ~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l-~~~g~~~~~~~~~~~~~~i~~~~~  420 (432)
T PRK10406        342 LVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSL-KSIGMETAFFWYVTLMAVVAFLVS  420 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHH-HHhCCCcHHHHHHHHHHHHHHHHH
Confidence            223333334444456778899999999999999998866554 344477777755 4445 5556666555555555544


Q ss_pred             HH
Q 013144          273 LS  274 (449)
Q Consensus       273 ~~  274 (449)
                      ++
T Consensus       421 ~~  422 (432)
T PRK10406        421 LM  422 (432)
T ss_pred             HH
Confidence            44

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.28  E-value=8.7e-11  Score=112.60  Aligned_cols=151  Identities=16%  Similarity=0.134  Sum_probs=119.4

Q ss_pred             hhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhh-cCCchHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHH
Q 013144          120 VAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDY-YGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAV  198 (449)
Q Consensus       120 ~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr-~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l  198 (449)
                      ...|.+.++.+.++.+.+++.+...++..++..+.+++.|| ++.++.+..+.++.+++.++.++.  ++++.+++..++
T Consensus       229 ~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~l  306 (400)
T PRK11646        229 LMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMV--SNLQQLFTLICL  306 (400)
T ss_pred             HhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHH
Confidence            34666666655577889999888887777666666777765 666777788888888888877777  888888888888


Q ss_pred             HhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhh---C-chHHHHHHHHHHHHHHHHH
Q 013144          199 VGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQA---G-IFGPFVIFGLSGFLWVLVW  272 (449)
Q Consensus       199 ~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~---g-wr~~f~~~~~~~~~~~~~~  272 (449)
                      .|++.+...|...+++.|..|+++||+.+|+.+....+|..+||.++|.+.++.   + -...++..++++++..+..
T Consensus       307 ~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (400)
T PRK11646        307 FYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLLAL  384 (400)
T ss_pred             HHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHHHH
Confidence            999988888999999999999999999999999999999999999999998874   3 3455555555555544443

>TIGR00898 2A0119 cation transport protein

Probab=99.26  E-value=3e-10  Score=112.69  Aligned_cols=149  Identities=19%  Similarity=0.108  Sum_probs=114.4

Q ss_pred             hhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhh
Q 013144          126 SLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGV  205 (449)
Q Consensus       126 ~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~g~g~  205 (449)
                      .++++.+..   +......+....+.++.+++.||+|||+.+.++.++.+++.++..+.+..+.+..++.-++.+++.+.
T Consensus       350 ~~~~~~~~~---~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (505)
T TIGR00898       350 LGNLGGNIY---LDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITS  426 (505)
T ss_pred             ccccCCChH---HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH
Confidence            344454432   33345566777888899999999999999999999999988887776322335556666777788788


Q ss_pred             hhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHhcCCCC
Q 013144          206 ALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTP  280 (449)
Q Consensus       206 ~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~  280 (449)
                      ..+..+.+..|.+|++.|+.++|+.+....+|.+++|.+.+ + ...++..++++.+...++..++.++ .||+.
T Consensus       427 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~-lpet~  498 (505)
T TIGR00898       427 AFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFGGLALLAGILTLF-LPETK  498 (505)
T ss_pred             HHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHHHHHHHHHHHHHc-CcCCC
Confidence            88889999999999999999999999999999999999988 4 3456777888877777776665544 45543

>TIGR00896 CynX cyanate transporter

Probab=99.26  E-value=2e-10  Score=108.42  Aligned_cols=133  Identities=17%  Similarity=0.086  Sum_probs=107.7

Q ss_pred             hhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhc-CCchHHHHHHHHHHHHHHHhhhccchhHHHHHHHH
Q 013144          118 MSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYY-GGKIIMAWGVALWSLATFLTPWAADTSLLALLAMR  196 (449)
Q Consensus       118 ~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~~r  196 (449)
                      .....|.+.++.|.+..+.+++.+...++..++.++.|++.||+ +||+.+.++..+.+++.++..+.  ++..... .-
T Consensus       216 ~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~  292 (355)
T TIGR00896       216 LIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFA--PMHGLWA-WA  292 (355)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHh--hhhHHHH-HH
Confidence            34456766677899999999999999999999999999999999 56777778888888887777666  4322222 35


Q ss_pred             HHHhhhhhhhhhHHHHHHhhccC-cchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhC
Q 013144          197 AVVGLAEGVALPAMNNMVARWFP-QTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG  253 (449)
Q Consensus       197 ~l~G~g~g~~~~~~~~~i~~~~~-~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~g  253 (449)
                      ++.|++.|...+...+.+.+..+ +++++...++.+....+|..++|.+.|.+.++.|
T Consensus       293 ~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g  350 (355)
T TIGR00896       293 LVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG  350 (355)
T ss_pred             HHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            67899999988888787765554 5667899999999899999999999999998876

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.25  E-value=4.7e-10  Score=106.40  Aligned_cols=166  Identities=17%  Similarity=0.202  Sum_probs=127.6

Q ss_pred             HHhHhhhhhhhhhhhhhcC-CCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhccchhHH
Q 013144          112 NADRVVMSVAIVPLSLAHG-WSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLL  190 (449)
Q Consensus       112 ~~~~~~~~~~~~~l~~~~~-~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~  190 (449)
                      ......+....+...++.| .+....+.+.+...++=++.-...+++..|+|.|+++.++++..++=..+.+... ++.+
T Consensus       220 ~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~-~~~~  298 (400)
T PF03825_consen  220 GISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFS-DPWP  298 (400)
T ss_pred             HHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhc-CCcH
Confidence            3333344444555566776 6777788888888888889999999999999999999999999999888877662 2322


Q ss_pred             H----HHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHH-hhhhhhHhHHHHHHHHHhhhCch------HHHH
Q 013144          191 A----LLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMG-GFTSGNAIGLVLSPILMSQAGIF------GPFV  259 (449)
Q Consensus       191 ~----l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~-~~~~G~~~g~~l~~~l~~~~gwr------~~f~  259 (449)
                      .    .++...++|+..|..+..+..++.+..|++.|+++.++++. ..++|..+|..++|++.+++|-+      ..+.
T Consensus       299 ~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~  378 (400)
T PF03825_consen  299 FIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFL  378 (400)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHH
Confidence            2    23345679999999999999999999999999999999876 56899999999999999987744      3445


Q ss_pred             HHHHHHHHHHHHHHHhcCC
Q 013144          260 IFGLSGFLWVLVWLSATSS  278 (449)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~  278 (449)
                      +.+.+.++..++.++..+|
T Consensus       379 v~a~~~~~~~~~f~~~fk~  397 (400)
T PF03825_consen  379 VFAVMALVILVLFVILFKP  397 (400)
T ss_pred             HHHHHHHHHHHHHHhhccC
Confidence            5555555555555444443

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.25  E-value=1.3e-10  Score=114.04  Aligned_cols=148  Identities=17%  Similarity=0.026  Sum_probs=105.5

Q ss_pred             hhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCc-------hHHHHHHHHHHHHHHHhhhccchhHHHHHHHH
Q 013144          124 PLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGK-------IIMAWGVALWSLATFLTPWAADTSLLALLAMR  196 (449)
Q Consensus       124 ~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr-------~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~~r  196 (449)
                      .+.+++|.+..+.+++.+++.++..++.++.|+++||+|||       ..+.+..++.++..++.+..  ++.+..++.-
T Consensus       278 ~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~--~~~~~~~~~~  355 (476)
T PLN00028        278 YFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRA--NSLGAAIVVM  355 (476)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhccc--chHHHHHHHH
Confidence            34567899999999999999999999999999999999865       23333333333444444445  5666666666


Q ss_pred             HHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHh
Q 013144          197 AVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSA  275 (449)
Q Consensus       197 ~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~  275 (449)
                      ++.+++.+...+...+++.+.. +++||...|+...+..+|..+++.+.+ ..+..+|+..|++.+++.++..++.++.
T Consensus       356 ~l~~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~  432 (476)
T PLN00028        356 ILFSIFVQAACGATFGIVPFVS-RRSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFI  432 (476)
T ss_pred             HHHHHHHHHhhhhhcccCcccC-hhhchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhe
Confidence            6777776666666667777765 478999999987777677766665543 1123469999999887777766655554

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.24  E-value=5.8e-11  Score=112.90  Aligned_cols=181  Identities=17%  Similarity=0.105  Sum_probs=138.8

Q ss_pred             HHHHHHHHHHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHh
Q 013144          102 SMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLT  181 (449)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~  181 (449)
                      ..+.+......-+..........+-++-|++..++.+......+...+..+.+..+.||+|||+.++.+..+..+..+++
T Consensus       273 i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~  352 (485)
T KOG0569|consen  273 IGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLM  352 (485)
T ss_pred             HHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH
Confidence            33333333333444455566677888889999999999999999999999999999999999999999999999988876


Q ss_pred             hhccc--hhH--H---HHHHHHHHHhhhhh-hhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhC
Q 013144          182 PWAAD--TSL--L---ALLAMRAVVGLAEG-VALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG  253 (449)
Q Consensus       182 ~~~~~--~~~--~---~l~~~r~l~G~g~g-~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~g  253 (449)
                      .....  ...  |   ..+++.++..++.+ +.-|...-+.+|.+|++.|+.++++......+..++-...-..+.+.+|
T Consensus       353 ~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g  432 (485)
T KOG0569|consen  353 SIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIG  432 (485)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            55411  111  1   12334444333333 2367888999999999999999999999999988888888778877777


Q ss_pred             chHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 013144          254 IFGPFVIFGLSGFLWVLVWLSATSSTPDRH  283 (449)
Q Consensus       254 wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~  283 (449)
                      - +.|+..++.+++..+..++..||++.+.
T Consensus       433 ~-~~filF~i~~~~~~i~~~~~lPETkgr~  461 (485)
T KOG0569|consen  433 P-YVFILFVIPLAIFLIYLYRYLPETKGRT  461 (485)
T ss_pred             c-hhhHHHHHHHHHHHHHHHHhCcccCCCC
Confidence            6 7888888898888888899998887543

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=99.22  E-value=3.1e-10  Score=109.22  Aligned_cols=160  Identities=18%  Similarity=0.117  Sum_probs=129.2

Q ss_pred             hhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcC-----CchHHHHHHHHHHHHHHHhhhccc--hhHH
Q 013144          118 MSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYG-----GKIIMAWGVALWSLATFLTPWAAD--TSLL  190 (449)
Q Consensus       118 ~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~G-----rr~~l~~~~~~~~i~~~~~~~~~~--~~~~  190 (449)
                      .....+.+++++|+++.+.....+...+...+ .+++|.++|-+.     ||+-++++.++..++.+.++..+.  .+..
T Consensus         9 ~~~~~~~l~~~l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~   87 (433)
T PF03092_consen    9 RLAIYPFLKDDLGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAA   87 (433)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhh
Confidence            34567889999999999999999888888755 555799999863     556677777777666665555421  4577


Q ss_pred             HHHHHHHHHhhhhhhhhhHHHHHHhhccC--cchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchHHHHHHHHHHHHH
Q 013144          191 ALLAMRAVVGLAEGVALPAMNNMVARWFP--QTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLW  268 (449)
Q Consensus       191 ~l~~~r~l~G~g~g~~~~~~~~~i~~~~~--~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~  268 (449)
                      ...+.-++..+|.+....++-+++.|...  ++.||...+.......+|.+++..++|.+.+..++++.|.+.+++..+.
T Consensus        88 ~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~  167 (433)
T PF03092_consen   88 IAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLM  167 (433)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHH
Confidence            77777888999999999999999999983  3448889999999999999999999999999999999999988887777


Q ss_pred             HHHHHHhcCC
Q 013144          269 VLVWLSATSS  278 (449)
Q Consensus       269 ~~~~~~~~~~  278 (449)
                      .+..++..+|
T Consensus       168 ~~~~~~~~~e  177 (433)
T PF03092_consen  168 LIVALFLLEE  177 (433)
T ss_pred             HHHHHHhhhh
Confidence            7666676665

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PRK09848 glucuronide transporter; Provisional

Probab=99.22  E-value=4.5e-10  Score=109.53  Aligned_cols=138  Identities=19%  Similarity=0.153  Sum_probs=110.7

Q ss_pred             hhhhhhhhh-hhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhccchhHHHHHHH
Q 013144          117 VMSVAIVPL-SLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAM  195 (449)
Q Consensus       117 ~~~~~~~~l-~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~~  195 (449)
                      ......+.+ ++.+|.++...++......++..++.++++++.||+|+|+++.++.++..++.++..+.+..+++.+++.
T Consensus       246 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~  325 (448)
T PRK09848        246 AVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVA  325 (448)
T ss_pred             HHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHH
Confidence            333344544 4456766655555555556778889999999999999999999999998888877776533577778888


Q ss_pred             HHHHhhhhhhhhhHHHHHHhhccCcc-------hhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCc
Q 013144          196 RAVVGLAEGVALPAMNNMVARWFPQT-------ERARAVAIAMGGFTSGNAIGLVLSPILMSQAGI  254 (449)
Q Consensus       196 r~l~G~g~g~~~~~~~~~i~~~~~~~-------~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gw  254 (449)
                      .++.|+|.+...+...++.+|..|.+       ++|...++.+....+|..+|+.+.+.+.+..|+
T Consensus       326 ~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~  391 (448)
T PRK09848        326 LAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGY  391 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            88999999999999999999988754       359999999999999999999999998877665

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.21  E-value=1.9e-10  Score=110.71  Aligned_cols=159  Identities=14%  Similarity=0.027  Sum_probs=109.4

Q ss_pred             HHHHHHHHHhHhhhhhhhhhhhhhc--CCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchH-HHHHHHHHHHHHHHh
Q 013144          105 ALALALCNADRVVMSVAIVPLSLAH--GWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKII-MAWGVALWSLATFLT  181 (449)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~-l~~~~~~~~i~~~~~  181 (449)
                      .+.+++.......+...+|.+.+++  +.+..+.++..+...++..++.++.|+++||++||+. +....++..++.++.
T Consensus       248 ~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~  327 (412)
T TIGR02332       248 TLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLA  327 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHH
Confidence            3333444444445556677777764  5677889999999999999999999999999998774 444444444443322


Q ss_pred             hhccchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhC-chHHHHH
Q 013144          182 PWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG-IFGPFVI  260 (449)
Q Consensus       182 ~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~g-wr~~f~~  260 (449)
                      ...  ++....+++-.+.++|.....+.......|.+|+++|+.+.|+.+....+|.+++|.+.+.+.+..| |++.|++
T Consensus       328 ~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~  405 (412)
T TIGR02332       328 SAT--DHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWF  405 (412)
T ss_pred             Hhc--CCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHH
Confidence            222  2222222222233333333344445555788999999999999999999999999999999999875 9999987


Q ss_pred             HHHHH
Q 013144          261 FGLSG  265 (449)
Q Consensus       261 ~~~~~  265 (449)
                      .++..
T Consensus       406 ~~~~~  410 (412)
T TIGR02332       406 VAALL  410 (412)
T ss_pred             HHHHH
Confidence            66543

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.20  E-value=4.5e-10  Score=102.70  Aligned_cols=173  Identities=17%  Similarity=0.117  Sum_probs=130.0

Q ss_pred             HHHHHHHHHHHhHhhhhhhhhh-hhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHh
Q 013144          103 MLALALALCNADRVVMSVAIVP-LSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLT  181 (449)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~  181 (449)
                      .+++.++..+.....++..+|. ++++|++++.+.|.+...+.+...+..+.+|+++||+|.+|++.+....++++..+.
T Consensus       222 ~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l  301 (417)
T COG2223         222 LLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALL  301 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHH
Confidence            3444444444444455555555 567899999999999999999999999999999999999999999999999988887


Q ss_pred             hhccc-----hhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhC-ch
Q 013144          182 PWAAD-----TSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG-IF  255 (449)
Q Consensus       182 ~~~~~-----~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~g-wr  255 (449)
                      .+..+     .+....++.-+..++..|.-......++..++| ++-|.+.|+.+...++|...-|..-+...+..| +.
T Consensus       302 ~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~-~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~  380 (417)
T COG2223         302 SLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFP-KETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYT  380 (417)
T ss_pred             HccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHH-hhhhHHHHHHHHhccccccchhHHHHHHHHhcccHH
Confidence            66521     233333333333444444444456677777885 588999999999999999999999898888777 89


Q ss_pred             HHHHHHHHHHHHHHHHHHHhc
Q 013144          256 GPFVIFGLSGFLWVLVWLSAT  276 (449)
Q Consensus       256 ~~f~~~~~~~~~~~~~~~~~~  276 (449)
                      ..|++.....++..+..+...
T Consensus       381 ~~f~~~~~~~~~a~v~~~~~y  401 (417)
T COG2223         381 GAFMLLLAFYLVALVLTWALY  401 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999998887777666544443

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.20  E-value=4e-10  Score=123.02  Aligned_cols=143  Identities=17%  Similarity=0.179  Sum_probs=122.5

Q ss_pred             hhhhhhhcCCCch-hhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHh
Q 013144          122 IVPLSLAHGWSRS-FSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVG  200 (449)
Q Consensus       122 ~~~l~~~~~~~~~-~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G  200 (449)
                      .+.+.+.+|.+.. +.+++.+...++..++.++.|++.||+++|+++.++.++.+++.++..+.  .+.+.++++.++.|
T Consensus       256 ~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g  333 (1146)
T PRK08633        256 PAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTA--PSLASVLVLFFLFG  333 (1146)
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHH
Confidence            3445567899998 99999999999999999999999999999999999999888888888887  78888889999999


Q ss_pred             hhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhh-hCchHHHHHHHHHHH
Q 013144          201 LAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQ-AGIFGPFVIFGLSGF  266 (449)
Q Consensus       201 ~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~-~gwr~~f~~~~~~~~  266 (449)
                      ++.+...+...+++.+..|+++||+++++.+....+|.++++.+++.+... +++...|++.+.+.+
T Consensus       334 ~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  400 (1146)
T PRK08633        334 FSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTL  400 (1146)
T ss_pred             HHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence            999998999999999999999999999999999999998888888776542 345556665554443

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.19  E-value=4.1e-10  Score=103.01  Aligned_cols=154  Identities=16%  Similarity=0.179  Sum_probs=131.4

Q ss_pred             hhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhccchhHHHHHHHHH
Q 013144          118 MSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRA  197 (449)
Q Consensus       118 ~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~  197 (449)
                      .......-..++|++..+..++.....+..+++++++|++.||+|.|+++..++++..+.++..-+.  ..-..+.++-.
T Consensus       272 l~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~--~~~~~f~i~gl  349 (438)
T COG2270         272 LAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFL--EGELDFWILGL  349 (438)
T ss_pred             HHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHc--cccHHHHHHHH
Confidence            3334444556999999999999999999999999999999999999999999999999998887777  66666677778


Q ss_pred             HHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhC-chHHHHHHHHHHHHHHHHHH
Q 013144          198 VVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG-IFGPFVIFGLSGFLWVLVWL  273 (449)
Q Consensus       198 l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~g-wr~~f~~~~~~~~~~~~~~~  273 (449)
                      +.|+..|..+..+.++.++..|+++-++.+|+++.....+..+||.+.+.+.+..| -|..+....++..+.+++.+
T Consensus       350 l~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~  426 (438)
T COG2270         350 LVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLL  426 (438)
T ss_pred             HHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEE
Confidence            99999999999999999999999999999999999999999999999999988654 67777666555555444433

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.18  E-value=1.3e-09  Score=107.56  Aligned_cols=131  Identities=22%  Similarity=0.277  Sum_probs=112.5

Q ss_pred             hhhh-hhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhc-cchhHHHHHHHHH
Q 013144          120 VAIV-PLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWA-ADTSLLALLAMRA  197 (449)
Q Consensus       120 ~~~~-~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~-~~~~~~~l~~~r~  197 (449)
                      ...| .+++.+|.++.+.|+....+.++..++.++.|++.||+|+|+.+..+.++.+++.++.... ..++.+...+..+
T Consensus       280 ~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~  359 (495)
T PRK14995        280 LLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMA  359 (495)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence            3444 4555689999999999999999999999999999999999999999998888877655432 1245666777889


Q ss_pred             HHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHh
Q 013144          198 VVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS  250 (449)
Q Consensus       198 l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~  250 (449)
                      +.|+|.|...+.....+.+..|+++++.+.++.+...++|..+|+.+.+.+.+
T Consensus       360 l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~  412 (495)
T PRK14995        360 LLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLS  412 (495)
T ss_pred             HHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999899999999999999999999999999999999999988865

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.17  E-value=4.7e-10  Score=110.72  Aligned_cols=134  Identities=15%  Similarity=0.229  Sum_probs=114.6

Q ss_pred             hhhhhhhh-hhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhh--ccchhHHHHHHH
Q 013144          119 SVAIVPLS-LAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPW--AADTSLLALLAM  195 (449)
Q Consensus       119 ~~~~~~l~-~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~--~~~~~~~~l~~~  195 (449)
                      ....|.+. +.+|.++.+.++......++..++.++.|++.||+|||+.+.++..+.+++..+..+  .+..+++.+++.
T Consensus       275 ~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (485)
T TIGR00711       275 FYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALP  354 (485)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHH
Confidence            33455544 457999999999999999999999999999999999999999999988888887662  222467777788


Q ss_pred             HHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhh
Q 013144          196 RAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQA  252 (449)
Q Consensus       196 r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~  252 (449)
                      .++.|+|.+...+.......+..|+++|+.+.++.+....+|..+|+.+.+.+.++.
T Consensus       355 ~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~~  411 (485)
T TIGR00711       355 QFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTNR  411 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999888777888888899999999999999999999999999999987653

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.16  E-value=1.7e-09  Score=103.40  Aligned_cols=160  Identities=16%  Similarity=0.103  Sum_probs=110.3

Q ss_pred             hhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhc-c---chhHHHH
Q 013144          117 VMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWA-A---DTSLLAL  192 (449)
Q Consensus       117 ~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~-~---~~~~~~l  192 (449)
                      .++..+|.+.++ ..+.........+..+...+..+++|+++||+|+|+++.++.+...++....... +   ..+++.+
T Consensus       270 g~s~~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~  348 (462)
T PRK15034        270 GFSAGFAMLAKT-QFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAF  348 (462)
T ss_pred             HHHHHHHHHHHH-HcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHH
Confidence            344445554433 2233333333445678888999999999999999999999998777776442222 1   1356666


Q ss_pred             HHHHHHHhhhhhhhhhHHHHHHhhccCc---------------------chhhHHHHHHHHhhhhhhHhHHHHHHHHHhh
Q 013144          193 LAMRAVVGLAEGVALPAMNNMVARWFPQ---------------------TERARAVAIAMGGFTSGNAIGLVLSPILMSQ  251 (449)
Q Consensus       193 ~~~r~l~G~g~g~~~~~~~~~i~~~~~~---------------------~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~  251 (449)
                      .+.-+...++.|........++.+++|+                     ++-|.+.|+.+....+|..+-|.+-+...+.
T Consensus       349 ~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~  428 (462)
T PRK15034        349 YAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNM  428 (462)
T ss_pred             HHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHH
Confidence            6666665566666666777788888864                     2578899999999999999999887777766


Q ss_pred             hC-chHHHHHHHHHHHHHHHHHHHhcC
Q 013144          252 AG-IFGPFVIFGLSGFLWVLVWLSATS  277 (449)
Q Consensus       252 ~g-wr~~f~~~~~~~~~~~~~~~~~~~  277 (449)
                      .| +...|+...+..++..++.+...-
T Consensus       429 ~g~~~~~~~~~~~~~~~~~~~~w~~y~  455 (462)
T PRK15034        429 TGSPVGAMKVFLIFYIVCVLLTWLVYG  455 (462)
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHHHhc
Confidence            44 888888877776666665555543

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.15  E-value=2.4e-09  Score=102.59  Aligned_cols=134  Identities=16%  Similarity=0.077  Sum_probs=97.0

Q ss_pred             hhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhh
Q 013144          125 LSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEG  204 (449)
Q Consensus       125 l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~g~g  204 (449)
                      +.+++|.++.+.+.+.+...++..++.++.|++.||+|||+.+.++..+..++.++..+.  ++.+..++.-.+.+.|.+
T Consensus       230 ~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~g~~  307 (392)
T PRK10473        230 LMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALS--PSHAVSLFGITLICAGFS  307 (392)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence            456789999999999999999999999999999999999999999999988888887776  555444444444444444


Q ss_pred             hhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchHHHHHHHHHH
Q 013144          205 VALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSG  265 (449)
Q Consensus       205 ~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~  265 (449)
                      ...+.  ....+..|.++|+   +..+....++..+|+.+++++.+..|+.....+.+++.
T Consensus       308 ~~~~~--~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~~~~~~~  363 (392)
T PRK10473        308 VGFGV--AMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLGISAWNMLIGILI  363 (392)
T ss_pred             HHhHH--HHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence            33333  2334455544543   44445566788888888888888888876555554433

>PRK10133 L-fucose transporter; Provisional

Probab=99.15  E-value=2.2e-09  Score=103.98  Aligned_cols=140  Identities=11%  Similarity=0.100  Sum_probs=113.8

Q ss_pred             hhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhh
Q 013144          126 SLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGV  205 (449)
Q Consensus       126 ~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~g~g~  205 (449)
                      ++.+|.++.+.++....+.++..++.++.|++.||+|+|+++..+.++..++.++..+.  ++.+ .+..-.+.|++.+.
T Consensus       287 ~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~--~~~~-~~~~~~l~glg~~~  363 (438)
T PRK10133        287 EEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA--GGHV-GLIALTLCSAFMSI  363 (438)
T ss_pred             hhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc--CChH-HHHHHHHHHHHHHH
Confidence            45689999999999999999999999999999999999999999988887777666665  4432 34556789999999


Q ss_pred             hhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhC-chHHHHHHHHHHHHHHH
Q 013144          206 ALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG-IFGPFVIFGLSGFLWVL  270 (449)
Q Consensus       206 ~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~g-wr~~f~~~~~~~~~~~~  270 (449)
                      .+|...+...|..| ++.+.+.++... ..+|..++|.+.|.+.+..| -|..|++..+..+....
T Consensus       364 i~P~~~s~a~~~~~-~~~~~as~l~~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~~  427 (438)
T PRK10133        364 QYPTIFSLGIKNLG-QDTKYGSSFIVM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI  427 (438)
T ss_pred             HHHHHHHHHHcccc-hhhccchhHHhH-HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence            99999999999886 456777777764 44788889999999999887 78888765555444333

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=99.14  E-value=1.8e-07  Score=89.66  Aligned_cols=273  Identities=10%  Similarity=-0.051  Sum_probs=172.7

Q ss_pred             HHHHHHHHHHHHHhHhhhhhhhhhhhhhcCC-----CchhhHHHHHHHHHHHHHh-hccchhhhhhcCCchHHHHHHHHH
Q 013144          101 VSMLALALALCNADRVVMSVAIVPLSLAHGW-----SRSFSGIVQSSFLWGYLVS-PIAGGTLVDYYGGKIIMAWGVALW  174 (449)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~g~~~s~~~~~~~~~-~~~~G~l~dr~Grr~~l~~~~~~~  174 (449)
                      +..+.+..++..++.+    ++-++++.+.+     ....+.++-+...+...+. .++.+++++|++|++++-+....+
T Consensus         9 ~~~~~l~fF~il~~Y~----iLR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F   84 (472)
T TIGR00769         9 FLPLFLMFFCILFNYT----ILRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPF   84 (472)
T ss_pred             HHHHHHHHHHHHHHHH----HHHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHH
Confidence            3344444444444333    34556666654     3467899999888877776 888999999999999988887777


Q ss_pred             HHHHHHhhhc--cch---------------------------hHHHHHHHHHHHhhhhhhhhh-HHHHHHhhccCcchhh
Q 013144          175 SLATFLTPWA--ADT---------------------------SLLALLAMRAVVGLAEGVALP-AMNNMVARWFPQTERA  224 (449)
Q Consensus       175 ~i~~~~~~~~--~~~---------------------------~~~~l~~~r~l~G~g~g~~~~-~~~~~i~~~~~~~~rg  224 (449)
                      .+...++++.  +.+                           +.|...+..+...+-...... .-..+++|.++.++-.
T Consensus        85 ~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qak  164 (472)
T TIGR00769        85 LGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAK  164 (472)
T ss_pred             HHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence            7776665554  101                           133333444455555455554 7788999999999999


Q ss_pred             HHHHHHHHhhhhhhHhHHHHHHHHHhh--------hCch----HHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHH
Q 013144          225 RAVAIAMGGFTSGNAIGLVLSPILMSQ--------AGIF----GPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELE  292 (449)
Q Consensus       225 ~~~~~~~~~~~~G~~~g~~l~~~l~~~--------~gwr----~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (449)
                      |..++++.+.++|.++++.+..++.+.        ..|.    +.+.+.++.+++...+.....+....+++..+.++  
T Consensus       165 Rfy~l~~~ganlg~i~sg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--  242 (472)
T TIGR00769       165 RFYALFGLGANVALIFSGRTIKYFSKLRASLGPGVDGWHVSLKNLMVIVICSGLAIILLYWWVNRNVLTDPRSYNPAL--  242 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccccchhh--
Confidence            999999999999999999998888731        1242    23333333334433333333222211111111110  


Q ss_pred             HHHHhccCccccCCCCCCCCCchhHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccc----hhhHhhH
Q 013144          293 YILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQ----ASWFSAV  368 (449)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~----~~~~~~~  368 (449)
                                ...+++++.+....++.++++|.++.+++...+++...+.+....-..+.+.+ -++.+    .|.+...
T Consensus       243 ----------~~~k~k~k~~~~es~k~i~~S~yL~~ia~~vi~y~~~~nlve~~~k~~v~~~~-p~~~~~~~f~g~~~~~  311 (472)
T TIGR00769       243 ----------KEKKVKPKMSTMESLKFLVSSPYILDLALLVIAYGISINLVEVTWKSKLKAQY-PSPNEYSAFMGDFSTW  311 (472)
T ss_pred             ----------ccccCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHH
Confidence                      00122234455678899999999999888888887777777665555555543 23322    3334455


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Q 013144          369 PWSVMAFTGYLGGLLSDMLIQR  390 (449)
Q Consensus       369 ~~~~~~~~~~~~g~l~dr~g~~  390 (449)
                      .++..++.+++.+++.+|+|-+
T Consensus       312 ~gi~tl~~~l~~~~l~~~~Gw~  333 (472)
T TIGR00769       312 TGVVSVTMMLLSGNVIRKYGWL  333 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHH
Confidence            5566666677778999999877

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.14  E-value=2.7e-09  Score=102.08  Aligned_cols=140  Identities=19%  Similarity=0.153  Sum_probs=114.1

Q ss_pred             hhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhh
Q 013144          124 PLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAE  203 (449)
Q Consensus       124 ~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~g~  203 (449)
                      .+.+.+|.++.+.|++.+...++..++++..+++.||+++|+++..+.. .++..++.++.  ++++..++..++.|++.
T Consensus       231 ~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~--~~~~~~~~~~~~~G~~~  307 (393)
T PRK11195        231 WAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMALQ--HSLLPAYPLLILIGALG  307 (393)
T ss_pred             HHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHHH--hHHHHHHHHHHHHHHhh
Confidence            4556789999999999999999999999999999999999998888753 44444455555  77887888888999999


Q ss_pred             hhhhhHHHHHHhhccCcch-hhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchHHHHHHHHHHHH
Q 013144          204 GVALPAMNNMVARWFPQTE-RARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFL  267 (449)
Q Consensus       204 g~~~~~~~~~i~~~~~~~~-rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~  267 (449)
                      +...+...+.+.+..|++. +|++.++.+...++|..++..+.+.+ ...|-+..+++.+...++
T Consensus       308 g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  371 (393)
T PRK11195        308 GFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPVVAVIVGFGLLV  371 (393)
T ss_pred             hhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHH
Confidence            9888888888888766554 79999999999999999999998865 567877777665444333

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.13  E-value=1.9e-09  Score=102.88  Aligned_cols=138  Identities=15%  Similarity=0.168  Sum_probs=103.6

Q ss_pred             hhhh-hhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhcc---chhHHHHHHHH
Q 013144          121 AIVP-LSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAA---DTSLLALLAMR  196 (449)
Q Consensus       121 ~~~~-l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~---~~~~~~l~~~r  196 (449)
                      ..|. +.+++|.++.+.+++.+...++..++.++.|++.||+|+|+.+..+..+..++.++..+..   .++.+.+++..
T Consensus       228 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (385)
T TIGR00710       228 GAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPM  307 (385)
T ss_pred             cChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            3444 4457899999999999999999999999999999999999999988888877776655431   12345556667


Q ss_pred             HHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhh-hhHhHHHHHHHHHhhhCchHHHHH
Q 013144          197 AVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTS-GNAIGLVLSPILMSQAGIFGPFVI  260 (449)
Q Consensus       197 ~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~-G~~~g~~l~~~l~~~~gwr~~f~~  260 (449)
                      ++.|++.+...+.......|..| ++|+++.++.+..... |.+.++.++ .+.+..+|...+..
T Consensus       308 ~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~-~~~~~~~~~~~~~~  370 (385)
T TIGR00710       308 MFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVS-LIHGNTAWPMSLSC  370 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHH-hccccChHHHHHHH
Confidence            88999999889999999999886 6899999998776654 555555544 44443344433333

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.10  E-value=8.8e-10  Score=103.77  Aligned_cols=126  Identities=19%  Similarity=0.225  Sum_probs=109.0

Q ss_pred             hhhhhhhhh-hhhcCCC-chhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhccc-hhHHHHH
Q 013144          117 VMSVAIVPL-SLAHGWS-RSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAAD-TSLLALL  193 (449)
Q Consensus       117 ~~~~~~~~l-~~~~~~~-~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~-~~~~~l~  193 (449)
                      ......|.+ .+++|.+ ..+.+++.+...+...++.++.|++.||+|+|+.+........++.+...+... ++....+
T Consensus       224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (352)
T PF07690_consen  224 GFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWLI  303 (352)
T ss_dssp             HHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHHH
T ss_pred             HhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            355556664 8889999 799999999999999999999999999999998888888888877777665521 2557777


Q ss_pred             HHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHH
Q 013144          194 AMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGL  242 (449)
Q Consensus       194 ~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~  242 (449)
                      +.-++.|++.+...+....++.|.+|+++||++.|+.....++|..+||
T Consensus       304 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  304 IALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            7889999999999999999999999999999999999999999999987

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK09669 putative symporter YagG; Provisional

Probab=99.09  E-value=2.4e-09  Score=104.35  Aligned_cols=123  Identities=9%  Similarity=0.147  Sum_probs=98.2

Q ss_pred             chhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhhhHHHH
Q 013144          133 RSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNN  212 (449)
Q Consensus       133 ~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~  212 (449)
                      +...+.+.....+...++.+++++++||+|+|+.+.++.++..+..+...+.+.++.+.+++..++.|++.+...+...+
T Consensus       263 ~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~a  342 (444)
T PRK09669        263 PDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWS  342 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445666677788888999999999999999999988876665444333332267888888889999999999999999


Q ss_pred             HHhhccCc-------chhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCch
Q 013144          213 MVARWFPQ-------TERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIF  255 (449)
Q Consensus       213 ~i~~~~~~-------~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr  255 (449)
                      +++|..+.       +..|...+..+....+|..+|+.+++.+.+..|+.
T Consensus       343 m~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy~  392 (444)
T PRK09669        343 MFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDYV  392 (444)
T ss_pred             HHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            99998852       23467889999999999999999999998877763

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.09  E-value=9.2e-10  Score=107.96  Aligned_cols=172  Identities=14%  Similarity=0.076  Sum_probs=113.5

Q ss_pred             HHHHHHHHHHHHhHhhhhhhhhhh-hhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHH--------HHHHH
Q 013144          102 SMLALALALCNADRVVMSVAIVPL-SLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIM--------AWGVA  172 (449)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l--------~~~~~  172 (449)
                      ...++..+........+...+|.+ .+.+|.+..+.+++.++..++..++.++.|+++||+++|+..        ..+..
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~  343 (465)
T TIGR00894       264 WAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIG  343 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence            333444444444444444455654 566899999999999999999999999999999998755321        11111


Q ss_pred             HH--HHHHHHhhhccchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHh
Q 013144          173 LW--SLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS  250 (449)
Q Consensus       173 ~~--~i~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~  250 (449)
                      ..  ++..+..... ..+.+..++.-.+.+.+.+...+.......|..| +.+|.+.++.+....+|..++|.+.+.+.+
T Consensus       344 ~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~  421 (465)
T TIGR00894       344 GLGPGIFAYALPYL-SAAFYLTIIILTLANAVSSGPLAGVLINSLDLAP-RFLGFIKGITGLPGFIGGLIASTLAGNILS  421 (465)
T ss_pred             HHHHHHHHHHHHHc-CCchHHHHHHHHHHHHHhhhhhhhhhhchhhcCh-hHHHHHHHHHHHHHHHHHHHHHHhhheeeC
Confidence            11  1111111111 1344444555555566555555555556667775 589999999999999999999999998876


Q ss_pred             hh---CchHHHHHHHHHHHHHHHHHHHh
Q 013144          251 QA---GIFGPFVIFGLSGFLWVLVWLSA  275 (449)
Q Consensus       251 ~~---gwr~~f~~~~~~~~~~~~~~~~~  275 (449)
                      ..   +|+..|++.++..++..++..+.
T Consensus       422 ~~~~~~~~~~f~~~~~~~~i~~i~~~~~  449 (465)
T TIGR00894       422 QDSKNVWLIVFLIMAFVNILCVIFYLIF  449 (465)
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHeeee
Confidence            43   48889988887777766555443

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.09  E-value=1.1e-09  Score=97.72  Aligned_cols=131  Identities=18%  Similarity=0.186  Sum_probs=97.3

Q ss_pred             HHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhccchhH--HHHHHHHHHHhhhhhhhhhHHHHHHhhccCc
Q 013144          143 FLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSL--LALLAMRAVVGLAEGVALPAMNNMVARWFPQ  220 (449)
Q Consensus       143 ~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~--~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~  220 (449)
                      ..+.-.-|.++.+++.||+|||+.|..+.++++++.++......+|.  .+++.+|++...    .+.+.++|..|.+|.
T Consensus       390 tslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg----~fqvaYvYtPEVyPT  465 (528)
T KOG0253|consen  390 TSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISG----AFQVAYVYTPEVYPT  465 (528)
T ss_pred             HHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhc----hheEEEEecCcccch
Confidence            44556678889999999999999999999999999988766632332  234555655443    355678899999999


Q ss_pred             chhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHhcCCC
Q 013144          221 TERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSST  279 (449)
Q Consensus       221 ~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~  279 (449)
                      +-|+...|..+....+|.++.|+++  +.....-..+..+.+..+++..+...+++-|+
T Consensus       466 avRatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiEt  522 (528)
T KOG0253|consen  466 AVRATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFPIET  522 (528)
T ss_pred             hhhhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheeeeecc
Confidence            9999999999999999999999998  33333444455556666666666655554443

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.09  E-value=5.4e-09  Score=102.54  Aligned_cols=141  Identities=13%  Similarity=-0.011  Sum_probs=109.2

Q ss_pred             hHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhh---ccchhHH
Q 013144          114 DRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPW---AADTSLL  190 (449)
Q Consensus       114 ~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~---~~~~~~~  190 (449)
                      .........+.+.+....++...+++.+...++..++.+++++++||+|+|+.+.++..+..++.+...+   ...++.+
T Consensus       246 ~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (473)
T PRK10429        246 ASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNAL  325 (473)
T ss_pred             HHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHH
Confidence            3334444445555544445667778888888899999999999999999999999888877766555432   2225677


Q ss_pred             HHHHHHHHHhhhhhhhhhHHHHHHhhccC-------cchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCc
Q 013144          191 ALLAMRAVVGLAEGVALPAMNNMVARWFP-------QTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGI  254 (449)
Q Consensus       191 ~l~~~r~l~G~g~g~~~~~~~~~i~~~~~-------~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gw  254 (449)
                      .+++.-++.|++.+...+...++++|..+       .++.|..++.......+|..+++.+.|.+.+..|+
T Consensus       326 ~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy  396 (473)
T PRK10429        326 LIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY  396 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            77888889999999999999999999965       33356689999999999999999999999887665

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=99.08  E-value=6.6e-09  Score=95.59  Aligned_cols=157  Identities=31%  Similarity=0.497  Sum_probs=129.5

Q ss_pred             HHHHHhHhhhhhhhhhhhhhcCCCc--hhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhccc
Q 013144          109 ALCNADRVVMSVAIVPLSLAHGWSR--SFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAAD  186 (449)
Q Consensus       109 ~~~~~~~~~~~~~~~~l~~~~~~~~--~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~  186 (449)
                      +....+........+.+..+++.+.  ...++..+.+.++..++.++.|.+.||+|||+.+..+.....++.+++++.  
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~--   89 (338)
T COG0477          12 LLLGLDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALA--   89 (338)
T ss_pred             HHHHHhcchHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhC--
Confidence            3333566666777888888877666  589999999999999999999999999999998888887766666777776  


Q ss_pred             hh--HHHHHHHHHHHhhhhhhhhhHHHHHHhhccCc-chhhHHHHHHHH-hhhhhhHhHHHHHHHHHhh--hCchHHHHH
Q 013144          187 TS--LLALLAMRAVVGLAEGVALPAMNNMVARWFPQ-TERARAVAIAMG-GFTSGNAIGLVLSPILMSQ--AGIFGPFVI  260 (449)
Q Consensus       187 ~~--~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~-~~rg~~~~~~~~-~~~~G~~~g~~l~~~l~~~--~gwr~~f~~  260 (449)
                      .+  .+.+++.|+++|++.+...+...+++.|+.|+ ++|+...+.... ...+|..+++.+++.+...  .+||+.|..
T Consensus        90 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (338)
T COG0477          90 PNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLL  169 (338)
T ss_pred             ccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence            54  99999999999999999999999999999987 689999999888 5888999999888777654  579997776


Q ss_pred             HHHHHHH
Q 013144          261 FGLSGFL  267 (449)
Q Consensus       261 ~~~~~~~  267 (449)
                      .......
T Consensus       170 ~~~~~~~  176 (338)
T COG0477         170 AALLGLL  176 (338)
T ss_pred             HHHHHHH
Confidence            6655543

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.08  E-value=1.7e-09  Score=117.84  Aligned_cols=147  Identities=15%  Similarity=0.126  Sum_probs=118.4

Q ss_pred             hhhhh-hhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhc---------------
Q 013144          121 AIVPL-SLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWA---------------  184 (449)
Q Consensus       121 ~~~~l-~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~---------------  184 (449)
                      ..|.+ .+.+|.++.+.|++.+++.++.+++.++.|++.|++++++.+..+.++.+++.+..++.               
T Consensus       247 ~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  326 (1140)
T PRK06814        247 QLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSIL  326 (1140)
T ss_pred             HhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchh
Confidence            44554 45589999999999999999999999999999999888877766666666555433331               


Q ss_pred             ---cchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHh-hhCchHHHHH
Q 013144          185 ---ADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS-QAGIFGPFVI  260 (449)
Q Consensus       185 ---~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~-~~gwr~~f~~  260 (449)
                         ..++.+.+++..++.|++.+...+...+++.+.+|+++||+++|+.++...+|..+++++++.+.+ ..++...+++
T Consensus       327 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~  406 (1140)
T PRK06814        327 VFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILF  406 (1140)
T ss_pred             hhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence               015667788889999999999999999999999999999999999999999999999999999874 4566766666


Q ss_pred             HHHHHHH
Q 013144          261 FGLSGFL  267 (449)
Q Consensus       261 ~~~~~~~  267 (449)
                      .+++.++
T Consensus       407 ~~~~~~~  413 (1140)
T PRK06814        407 IALANLI  413 (1140)
T ss_pred             HHHHHHH
Confidence            5554433

>TIGR00901 2A0125 AmpG-related permease

Probab=99.08  E-value=9e-10  Score=104.07  Aligned_cols=119  Identities=14%  Similarity=0.118  Sum_probs=97.4

Q ss_pred             hhhhhhhhhhhhcCCCchhhHHHHHHHH-HHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhc--cc-------
Q 013144          117 VMSVAIVPLSLAHGWSRSFSGIVQSSFL-WGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWA--AD-------  186 (449)
Q Consensus       117 ~~~~~~~~l~~~~~~~~~~~g~~~s~~~-~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~--~~-------  186 (449)
                      ......|.+.+++|.++.+.+.+.+... ++..++.+++|++.||+|||+.+..+.++.+++..+..+.  ..       
T Consensus       227 ~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (356)
T TIGR00901       227 AATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITF  306 (356)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCccccccc
Confidence            3444556665669999999998888766 6788999999999999999999998888887776654432  11       


Q ss_pred             hhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhh
Q 013144          187 TSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFT  235 (449)
Q Consensus       187 ~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~  235 (449)
                      ++.+.+..+.++.+++.+...+...+++.|.+|+++||+.+|+.++..+
T Consensus       307 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       307 PHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             chHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence            2457788888999999999999999999999999999999999887654

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.06  E-value=4.5e-09  Score=101.85  Aligned_cols=152  Identities=16%  Similarity=0.103  Sum_probs=124.3

Q ss_pred             HHHHHHHHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhh
Q 013144          104 LALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPW  183 (449)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~  183 (449)
                      +.+..++............+.+.++.--++...+.+..+..++..++.+++++++||+|+|+++..+.++.+++.++..+
T Consensus       230 l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~  309 (428)
T PF13347_consen  230 LLLAFFLQWLAFALMNTFLPYYFTYVLGNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFF  309 (428)
T ss_pred             HHHHHHHHHhhhhhhhhHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHH
Confidence            33334444444445555566666553224467888889999999999999999999999999999999999999999888


Q ss_pred             ccchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCc-------chhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCch
Q 013144          184 AADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQ-------TERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIF  255 (449)
Q Consensus       184 ~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~-------~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr  255 (449)
                      .+.++.+.+++.-++.|++.+..++...++++|..+.       ++.|...+..+....+|..+++.+.+.+.+..|+.
T Consensus       310 ~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy~  388 (428)
T PF13347_consen  310 LGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGYD  388 (428)
T ss_pred             HHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCcC
Confidence            8224999999999999999999999999999999863       34589999999999999999999999988766653

>PRK11043 putative transporter; Provisional

Probab=99.06  E-value=8.8e-09  Score=99.01  Aligned_cols=135  Identities=19%  Similarity=0.234  Sum_probs=103.6

Q ss_pred             hhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHh---hhccchhHHHHHHHH
Q 013144          120 VAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLT---PWAADTSLLALLAMR  196 (449)
Q Consensus       120 ~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~---~~~~~~~~~~l~~~r  196 (449)
                      ...|.+.+++|.++.+.|+....+.++..++.+..+++.||+|+|+.+....+..+++.+..   .....++.+.+++..
T Consensus       224 ~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (401)
T PRK11043        224 TGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPF  303 (401)
T ss_pred             HHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence            34566677789999999999888999999999999999999999987666555544443322   221114566666777


Q ss_pred             HHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCch
Q 013144          197 AVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIF  255 (449)
Q Consensus       197 ~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr  255 (449)
                      .+.|++.+...+...+...|..| ++||++.++.+.....+...++.+.+.+.+.....
T Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~  361 (401)
T PRK11043        304 CVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALISTPLLT  361 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCCChhH
Confidence            88899999889988888888775 68999999999988888888888888886643333

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.06  E-value=5.7e-09  Score=98.56  Aligned_cols=159  Identities=12%  Similarity=0.034  Sum_probs=108.4

Q ss_pred             HHHHHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCc---hHHH-HHHHHHHHHHHHhh
Q 013144          107 ALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGK---IIMA-WGVALWSLATFLTP  182 (449)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr---~~l~-~~~~~~~i~~~~~~  182 (449)
                      ..++.......+..-+|.+.++.|.+.. .+...++..+...++   .++++||.+||   +... ...++.++...+.+
T Consensus       200 ~~~~~~~~~~~~~~wlp~~L~~~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~  275 (368)
T TIGR00903       200 ILGFGVALFDNLAIWLEAALRPAGLEDI-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAFFLALA  275 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            3333344444445567777777777754 566655555555555   47788877654   3323 23444444444445


Q ss_pred             hccchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchHHHHHHH
Q 013144          183 WAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFG  262 (449)
Q Consensus       183 ~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~  262 (449)
                      +.  .+....++.-.+.|++.....+...++.+|.+|++.|+++.|+.+....+|.+++|.+.+.+..  |-+..|.+.+
T Consensus       276 ~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~  351 (368)
T TIGR00903       276 FE--LNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLA  351 (368)
T ss_pred             Hc--cccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHH
Confidence            44  4444555556677777777778888999999999999999999999999999999999887773  7777888877


Q ss_pred             HHHHHHHHHHH
Q 013144          263 LSGFLWVLVWL  273 (449)
Q Consensus       263 ~~~~~~~~~~~  273 (449)
                      +..++..+..+
T Consensus       352 ~~~~i~~~~~~  362 (368)
T TIGR00903       352 ILITIAFAIAL  362 (368)
T ss_pred             HHHHHHHHHHH
Confidence            77776665544

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.05  E-value=3.2e-09  Score=91.51  Aligned_cols=164  Identities=15%  Similarity=0.124  Sum_probs=118.4

Q ss_pred             HHHHHHHHHHHHHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHH-
Q 013144           99 KVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLA-  177 (449)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~-  177 (449)
                      .++.+++..+.+..+...  ...-..+++++|+++...+.+.+......++.+++.|.++||+|++-..+.+..+..+. 
T Consensus       267 w~~~iicv~yyva~fPFi--~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~  344 (459)
T KOG4686|consen  267 WVLVIICVLYYVAWFPFI--TLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLG  344 (459)
T ss_pred             HHHHHHHHHHHHHHHHHh--hhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHH
Confidence            445555555555544333  23344578899999999999999888889999999999999999998777666655444 


Q ss_pred             HHHhhhccchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhC---c
Q 013144          178 TFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG---I  254 (449)
Q Consensus       178 ~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~g---w  254 (449)
                      -....+    +++.=+++-.+.|+............++...|+++.|.+.|..++..++|..+.|++++++.+.-|   |
T Consensus       345 H~~l~F----t~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~  420 (459)
T KOG4686|consen  345 HSGLFF----TFLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDN  420 (459)
T ss_pred             hhhHHh----hhccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhh
Confidence            333333    233334556677887766555566778888999999999999999999999999999999998655   4


Q ss_pred             hHHHHH-HHHHHHHH
Q 013144          255 FGPFVI-FGLSGFLW  268 (449)
Q Consensus       255 r~~f~~-~~~~~~~~  268 (449)
                      --.|.+ .+.+++..
T Consensus       421 le~ffl~~~~~aL~s  435 (459)
T KOG4686|consen  421 LEAFFLIIGLMALTS  435 (459)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            334443 34444443

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=99.04  E-value=1.2e-08  Score=94.00  Aligned_cols=272  Identities=17%  Similarity=0.150  Sum_probs=162.9

Q ss_pred             HHHHHHHHHHHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhh----cCCchHHHH-HHHHHH
Q 013144          101 VSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDY----YGGKIIMAW-GVALWS  175 (449)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr----~Grr~~l~~-~~~~~~  175 (449)
                      ++.+....+...+.+..-....+++.+++|++....+.+.-...+...+.+++.|..+||    |||||.++. +.+...
T Consensus        34 li~v~~ia~Gvqf~wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~  113 (498)
T KOG0637|consen   34 LISVASIAAGVQFGWALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIA  113 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHH
Confidence            334444444445555555566788888999999999999999999999999999999995    898875554 445556


Q ss_pred             HHHHHhhhccchh-----------------HHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhH-HHHHHHHhhhhh
Q 013144          176 LATFLTPWAADTS-----------------LLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERAR-AVAIAMGGFTSG  237 (449)
Q Consensus       176 i~~~~~~~~~~~~-----------------~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~-~~~~~~~~~~~G  237 (449)
                      ++.++.+++  .+                 ...++++--+.=++.-.....+-+++.|...++++.+ +.+.+..+..+|
T Consensus       114 ~~l~Lig~a--aDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avG  191 (498)
T KOG0637|consen  114 VSLFLIGYA--ADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVG  191 (498)
T ss_pred             HHHhhhhhH--hhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhc
Confidence            666666665  32                 2334444445555555778889999999997776666 999999999999


Q ss_pred             hHhHHHHHHHHHhhhCchHHH---------HHHHHHHHHHHHHHHHhcCCC------CCCCCCCCHHHHHHHHHhccCcc
Q 013144          238 NAIGLVLSPILMSQAGIFGPF---------VIFGLSGFLWVLVWLSATSST------PDRHPQISKYELEYILREKQKPL  302 (449)
Q Consensus       238 ~~~g~~l~~~l~~~~gwr~~f---------~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~  302 (449)
                      ..+|..+++++    +|+-.|         ..++.+-.....-+.+...++      +.++++..+.  ++.        
T Consensus       192 nvLGY~~g~y~----~~~~~~~Ft~~~~~~~~C~~~~~~~~~~v~L~~i~~~~~l~~~~~~~~s~~~--~~~--------  257 (498)
T KOG0637|consen  192 NVLGYALGSYL----GLYKIFPFTLTTACDLYCANLKLCFFLEVTLLLIETSESLWYPQEKPLSPKG--TTA--------  257 (498)
T ss_pred             ceeeeeccccc----CceEEeehHHHHHHHHHHHHHHHHHHHhhhhhheecccccccccccCCCCCc--ccc--------
Confidence            99999988744    544221         111111111111111111111      1111111110  000        


Q ss_pred             ccCCCCCCCCCchh-HHHhh-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhCCcccc---------------hh-
Q 013144          303 LMGNKHKPATVIPP-FRRLL-SKMPTWSIIVANAMHSWGFFVILSWMPIYFNF-VYHIDLRQ---------------AS-  363 (449)
Q Consensus       303 ~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~---------------~~-  363 (449)
                        +.+..+...... +..+. ..|..|.+++...+...+.+.+..+...++.+ .++-++..               .| 
T Consensus       258 --~~~~~~~~~~~e~fG~~~~mpr~m~~L~i~~lltW~a~f~f~LF~TDfmG~~vy~GDp~a~~~S~a~~~Y~~GV~~G~  335 (498)
T KOG0637|consen  258 --RSKSSKLPFLLEIFGALKVMPRPMRMLLIVTLLTWIAWFPFLLFDTDFMGREVYGGDPKADENSEAKKLYNAGVRMGC  335 (498)
T ss_pred             --cccccCcchHHHHhchHhhCChhHHHHHHHHHHHHHHHHHHHHHHHHhcchHhhCCCCCCCcchhHHHHHHhccccch
Confidence              000000000001 11111 23568888899999888888888888887754 34443321               11 


Q ss_pred             hHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 013144          364 WFSAVPWSVMAFTGYLGGLLSDMLIQR  390 (449)
Q Consensus       364 ~~~~~~~~~~~~~~~~~g~l~dr~g~~  390 (449)
                      +=+.+..+...+.+...-++.+|+|-|
T Consensus       336 ~GL~ins~~lgi~S~~~~~l~~~~g~r  362 (498)
T KOG0637|consen  336 LGLMLNSIVLGIYSLLVEKLSRKFGTR  362 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence            223344555666677788888888854

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.03  E-value=1e-08  Score=97.61  Aligned_cols=122  Identities=17%  Similarity=0.099  Sum_probs=88.6

Q ss_pred             hhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhh
Q 013144          124 PLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWA--ADTSLLALLAMRAVVGL  201 (449)
Q Consensus       124 ~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~--~~~~~~~l~~~r~l~G~  201 (449)
                      .+.+++|.++.+.+++.+...++..++.++.|++.||+|||+.+.++..+..+..+.....  ...+++.+.++-.+.+.
T Consensus       220 ~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (377)
T PRK11102        220 VYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVG  299 (377)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            3456689999999999999999999999999999999999999988887654433322111  01355555555556566


Q ss_pred             hhhhhhhHHHHHHhhccCcchhhHHHHHHHHh-hhhhhHhHHHHHH
Q 013144          202 AEGVALPAMNNMVARWFPQTERARAVAIAMGG-FTSGNAIGLVLSP  246 (449)
Q Consensus       202 g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~-~~~G~~~g~~l~~  246 (449)
                      +.+........++.|..| ++++.+.++.... ..+|..+++.+++
T Consensus       300 ~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~  344 (377)
T PRK11102        300 CVSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSL  344 (377)
T ss_pred             HHHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            666666667777888776 8899999987553 4566666666544

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.01  E-value=2.1e-08  Score=98.21  Aligned_cols=141  Identities=16%  Similarity=0.039  Sum_probs=114.6

Q ss_pred             hHHHHHHHHHHHHHhhccchh----hhhh-cCCchHH--HHHHHHHHHHHHHhhhc-------cchhHHHHHHHHHHHhh
Q 013144          136 SGIVQSSFLWGYLVSPIAGGT----LVDY-YGGKIIM--AWGVALWSLATFLTPWA-------ADTSLLALLAMRAVVGL  201 (449)
Q Consensus       136 ~g~~~s~~~~~~~~~~~~~G~----l~dr-~Grr~~l--~~~~~~~~i~~~~~~~~-------~~~~~~~l~~~r~l~G~  201 (449)
                      .+++.+...+...+.+++..+    +.+| .+.+...  .+|+++.+++.+..++.       ...|++++++..++.|+
T Consensus       314 ~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~  393 (475)
T TIGR00924       314 VIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTL  393 (475)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence            788999999999999888664    4444 2333433  77888888887776641       01699999999999999


Q ss_pred             hhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHhc
Q 013144          202 AEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSAT  276 (449)
Q Consensus       202 g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~  276 (449)
                      |.....|...+++.+..|++.||+++|++.....+|..+++.+........+|.+.|...++..++..++.++..
T Consensus       394 ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  468 (475)
T TIGR00924       394 GELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMV  468 (475)
T ss_pred             HHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999988877777899888888877776666655543

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.92  E-value=6.8e-09  Score=97.48  Aligned_cols=153  Identities=16%  Similarity=0.180  Sum_probs=136.4

Q ss_pred             hhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHh
Q 013144          121 AIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVG  200 (449)
Q Consensus       121 ~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G  200 (449)
                      .+-.-.||++..+..-|........+-++.-++.+++..|+|+-+++.+++.+..+=.+.....  +|.|+.+-..+++|
T Consensus       393 FLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L--~n~W~vLPieilqg  470 (618)
T KOG3762|consen  393 FLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYL--QNPWMVLPIEILQG  470 (618)
T ss_pred             HHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHh--cCchheeeHHHHHH
Confidence            3344457778788888888888888888899999999999999999999999999999888888  99999999999999


Q ss_pred             hhhhhhhhHHHHHHhhccCcchhhHHHHHHH-HhhhhhhHhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHh
Q 013144          201 LAEGVALPAMNNMVARWFPQTERARAVAIAM-GGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSA  275 (449)
Q Consensus       201 ~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~-~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~  275 (449)
                      +..+.+|.++.+|+++..||+-|..+.++.+ ...++|-.+|.++||.+.+.+|-|..|.+.++.+++.+++....
T Consensus       471 it~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~i  546 (618)
T KOG3762|consen  471 ITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFISI  546 (618)
T ss_pred             HHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999985 66789999999999999999999999999998888776655544

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.90  E-value=1.2e-07  Score=85.26  Aligned_cols=178  Identities=16%  Similarity=0.109  Sum_probs=138.5

Q ss_pred             ccchhHHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhc-CCchHHHHH
Q 013144           92 FITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYY-GGKIIMAWG  170 (449)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~-Grr~~l~~~  170 (449)
                      ++++..|.+.....+-.+    ..++.-.-+|.+..|.|+|+.+.|++.+...+......+....+.+|. .+|+..+..
T Consensus       205 w~~~~aW~vtLfmGlqS~----~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~  280 (395)
T COG2807         205 WRSPLAWQVTLFMGLQSL----LYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLA  280 (395)
T ss_pred             ccCchhHHHHHHHHhhHH----HHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHH
Confidence            444555665544444333    334555568999999999999999999999999999999999999965 578888888


Q ss_pred             HHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccC-cchhhHHHHHHHHhhhhhhHhHHHHHHHHH
Q 013144          171 VALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFP-QTERARAVAIAMGGFTSGNAIGLVLSPILM  249 (449)
Q Consensus       171 ~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~-~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~  249 (449)
                      .+++.+|.+.+.+.+.++++..   -++.|+|.|..++.+..++.+-.+ +++-+...++.+....+=..+||.+.|++.
T Consensus       281 ~~~~l~G~~G~~~~P~~~~~lw---~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lh  357 (395)
T COG2807         281 LLLMLVGLVGLLLAPGQLPILW---ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLH  357 (395)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHH---HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHH
Confidence            8888888888877743333333   489999999999999999998875 455566777777777777889999999999


Q ss_pred             hhh-CchHHHHHHHHHHHHHHHHHHHhc
Q 013144          250 SQA-GIFGPFVIFGLSGFLWVLVWLSAT  276 (449)
Q Consensus       250 ~~~-gwr~~f~~~~~~~~~~~~~~~~~~  276 (449)
                      |.. +|+...+..+...++..+.-+..-
T Consensus       358 Da~gsw~~~~~~l~~~~i~m~i~Gl~a~  385 (395)
T COG2807         358 DATGSWSAPLVLLALATLLMLIFGLRAG  385 (395)
T ss_pred             HhcCChHHHHHHHHHHHHHHHHHHhhcc
Confidence            875 499999888888777776665543

>TIGR00788 fbt folate/biopterin transporter

Probab=98.89  E-value=2.4e-08  Score=97.49  Aligned_cols=127  Identities=14%  Similarity=0.163  Sum_probs=112.0

Q ss_pred             hhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhcc--------chhHHHHHHHHHH
Q 013144          127 LAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAA--------DTSLLALLAMRAV  198 (449)
Q Consensus       127 ~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~--------~~~~~~l~~~r~l  198 (449)
                      +.+|.++.+.|++.....++.+++....+++.+|++.|+++.++.++.+++.+......        .++.+.++..-++
T Consensus       281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l  360 (468)
T TIGR00788       281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSII  360 (468)
T ss_pred             ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHH
Confidence            56899999999999999999999999999999999999999999999998876543110        0334456666789


Q ss_pred             HhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhC
Q 013144          199 VGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG  253 (449)
Q Consensus       199 ~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~g  253 (449)
                      .+++.+........++.+..|++++|...++..+..++|..+++.+++.+.++.|
T Consensus       361 ~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g  415 (468)
T TIGR00788       361 AEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG  415 (468)
T ss_pred             HHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999999999999999999999999999998877

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.88  E-value=6.9e-09  Score=93.93  Aligned_cols=165  Identities=18%  Similarity=0.163  Sum_probs=129.6

Q ss_pred             HHHHHhHhhhhhhhhh-hhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcC--CchHHHHHHHHHHHHHHHhhhcc
Q 013144          109 ALCNADRVVMSVAIVP-LSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYG--GKIIMAWGVALWSLATFLTPWAA  185 (449)
Q Consensus       109 ~~~~~~~~~~~~~~~~-l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~G--rr~~l~~~~~~~~i~~~~~~~~~  185 (449)
                      ..........-|.++. +.|.+..+..+.|+..--..+.+.++..+.|.++||++  |-.....+++..++.+....++ 
T Consensus       280 ~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~-  358 (464)
T KOG3764|consen  280 TFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFA-  358 (464)
T ss_pred             hhccchHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhh-
Confidence            3344444455555555 56677866779999999999999999999999999999  5344455555555556666777 


Q ss_pred             chhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcc------hhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchHHHH
Q 013144          186 DTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQT------ERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFV  259 (449)
Q Consensus       186 ~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~------~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~  259 (449)
                       +++.++++-++..|++.+...........+..+.+      -.|..-++....+.+|.++||.++|.+.+..|++|...
T Consensus       359 -~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~  437 (464)
T KOG3764|consen  359 -TSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMT  437 (464)
T ss_pred             -hhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHH
Confidence             99999999999999998887777666666666543      34788899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q 013144          260 IFGLSGFLWVLVWLSA  275 (449)
Q Consensus       260 ~~~~~~~~~~~~~~~~  275 (449)
                      +.++..++...+..++
T Consensus       438 iig~~n~iyapvl~ll  453 (464)
T KOG3764|consen  438 IIGILNLIYAPVLLLL  453 (464)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999888777665554

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.87  E-value=1.3e-07  Score=90.84  Aligned_cols=137  Identities=12%  Similarity=0.179  Sum_probs=103.1

Q ss_pred             hhhhhhhhhc--CCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhccchhHHHHHHHHH
Q 013144          120 VAIVPLSLAH--GWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRA  197 (449)
Q Consensus       120 ~~~~~l~~~~--~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~  197 (449)
                      ..++...++.  +.+....+...+.+..+..++.++.+++.||+++|+++.++.++..+..++..+.  ++... +..-+
T Consensus       253 s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~--~~~~~-~~~l~  329 (410)
T TIGR00885       253 TFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFA--GGHVG-LYCLT  329 (410)
T ss_pred             HHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc--CChHH-HHHHH
Confidence            3344444443  4444555666777778899999999999999999999999999999888888877  55444 56667


Q ss_pred             HHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhh------CchHHHHHH
Q 013144          198 VVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQA------GIFGPFVIF  261 (449)
Q Consensus       198 l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~------gwr~~f~~~  261 (449)
                      +.|++.+..+|...++..+..+++.+....++.. . .+|..++|++.|.+.|..      +.+..|++.
T Consensus       330 ~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~-~-~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~  397 (410)
T TIGR00885       330 LCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVM-A-IIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILP  397 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHH-H-HhccchHHHHHHHHHHHhcccccCccchHHHHH
Confidence            8888888889999999999997555433333333 3 399999999999999954      477777763

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK11462 putative transporter; Provisional

Probab=98.87  E-value=1.5e-07  Score=91.79  Aligned_cols=123  Identities=15%  Similarity=0.171  Sum_probs=88.7

Q ss_pred             CchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhhhHHH
Q 013144          132 SRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMN  211 (449)
Q Consensus       132 ~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~  211 (449)
                      ++...+++.+.+.++.+++.+++++++||+|+|+++..+..+..+..++..+.+..+...+++.-++.|++.+...+...
T Consensus       261 ~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~  340 (460)
T PRK11462        261 TPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQW  340 (460)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455677788888999999999999999999998776655544444443333223343445555677888877777777


Q ss_pred             HHHhhccC-------cchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCc
Q 013144          212 NMVARWFP-------QTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGI  254 (449)
Q Consensus       212 ~~i~~~~~-------~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gw  254 (449)
                      ++++|..+       .++.|..++.......+|..+|+.+++.+.+..|+
T Consensus       341 ~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy  390 (460)
T PRK11462        341 VMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGY  390 (460)
T ss_pred             HHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            78887765       33346666777788999999999999998876665

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.86  E-value=1.1e-07  Score=91.29  Aligned_cols=127  Identities=17%  Similarity=0.142  Sum_probs=96.3

Q ss_pred             hhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHH-HHHHHHHHhhhccchhHHHHHHHHHHHhhh
Q 013144          124 PLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVA-LWSLATFLTPWAADTSLLALLAMRAVVGLA  202 (449)
Q Consensus       124 ~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~-~~~i~~~~~~~~~~~~~~~l~~~r~l~G~g  202 (449)
                      .+.+.+|.++.+.+++.....++..++.++.+++.||++++........ +..+...........+.+.+.+..++.|++
T Consensus       233 ~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  312 (394)
T PRK11652        233 LMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFG  312 (394)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence            3444589999999999999999999999999999999984333222222 222222222221114567778888999999


Q ss_pred             hhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhh
Q 013144          203 EGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQ  251 (449)
Q Consensus       203 ~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~  251 (449)
                      .+...+...++..|.+| +++|.+.++.+....+|..+++.+++.+...
T Consensus       313 ~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~  360 (394)
T PRK11652        313 AGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQT  360 (394)
T ss_pred             HHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            99999999999999886 6889999999999999999999998887654

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.83  E-value=4.5e-07  Score=85.92  Aligned_cols=148  Identities=17%  Similarity=0.116  Sum_probs=120.4

Q ss_pred             HHHHHHHhHhhhhhhhhhhhh-hcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhcc
Q 013144          107 ALALCNADRVVMSVAIVPLSL-AHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAA  185 (449)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~  185 (449)
                      ..++........+.......+ -+|.++.+..+.......+..++.+++.++.+|+|+|+++.++.++..++.++..+.+
T Consensus       244 ~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~  323 (467)
T COG2211         244 MNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTP  323 (467)
T ss_pred             HHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhc
Confidence            444444444455555555443 4577777888888888888888899999999999999999999999999999988886


Q ss_pred             chhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCc-------chhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCc
Q 013144          186 DTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQ-------TERARAVAIAMGGFTSGNAIGLVLSPILMSQAGI  254 (449)
Q Consensus       186 ~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~-------~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gw  254 (449)
                      .++.+.+++..++.++|.+...+...++++|..+-       +.-|...+....+.-+|.+++..+.+++.+..|+
T Consensus       324 ~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~Gy  399 (467)
T COG2211         324 AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIGY  399 (467)
T ss_pred             CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            56899999999999999999999999999988642       3347888888888889999999998888776654

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.81  E-value=1.5e-07  Score=92.74  Aligned_cols=138  Identities=14%  Similarity=0.028  Sum_probs=105.0

Q ss_pred             hhHHHHHHHHHHHHHhhccc----hhhhhhcCCchHHHHHHHHHHHHHHHhhhccchh---------HHHHHHHHHHHhh
Q 013144          135 FSGIVQSSFLWGYLVSPIAG----GTLVDYYGGKIIMAWGVALWSLATFLTPWAADTS---------LLALLAMRAVVGL  201 (449)
Q Consensus       135 ~~g~~~s~~~~~~~~~~~~~----G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~---------~~~l~~~r~l~G~  201 (449)
                      ..+++.+...+...+..++.    +++.+|++..+.+.+++++.+++.+..++.  .+         .++++...++.|+
T Consensus       317 ~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~--~~~~~~~~~vs~~~~~~~~~l~~~  394 (500)
T PRK09584        317 EPEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLG--AKFANDAGIVSVNWLIASYGLQSI  394 (500)
T ss_pred             CHHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHH--HHhcCCCCccCHHHHHHHHHHHHH
Confidence            35677777776666666665    666777777788999999999998887766  44         5688999999999


Q ss_pred             hhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHh----------hhCchHHHHHHHHHHHHHHHH
Q 013144          202 AEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS----------QAGIFGPFVIFGLSGFLWVLV  271 (449)
Q Consensus       202 g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~----------~~gwr~~f~~~~~~~~~~~~~  271 (449)
                      |.+...|...+++.+..|++.||+++|++.....+|..++..+......          ..+..+.|...++.+++..++
T Consensus       395 ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~  474 (500)
T PRK09584        395 GELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVL  474 (500)
T ss_pred             HHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999998888777777777666543211          113567787777766554444


Q ss_pred             HHH
Q 013144          272 WLS  274 (449)
Q Consensus       272 ~~~  274 (449)
                      .+.
T Consensus       475 ~~~  477 (500)
T PRK09584        475 MLL  477 (500)
T ss_pred             HHH
Confidence            443

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=98.78  E-value=5.5e-06  Score=78.65  Aligned_cols=288  Identities=13%  Similarity=0.008  Sum_probs=166.7

Q ss_pred             HHHHHHHHHHHHHhHhhhhhhhhhhhhhcCC-CchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHH
Q 013144          101 VSMLALALALCNADRVVMSVAIVPLSLAHGW-SRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATF  179 (449)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~  179 (449)
                      ...+....++...+.-++....+.+..+..- +---.+...-.-.+..+++++..|.+.||..|.+++-.+.+..-++..
T Consensus         4 ~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~   83 (432)
T PF06963_consen    4 LWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVA   83 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHH
Confidence            3456677778888888888888887777642 333445555566677788888999999999999987777665444433


Q ss_pred             Hhhh------ccch-------hHHHHHHHHHHHhhhhhhh-hhHHHHHHhhcc------CcchhhHHHHHHHHhhhhhhH
Q 013144          180 LTPW------AADT-------SLLALLAMRAVVGLAEGVA-LPAMNNMVARWF------PQTERARAVAIAMGGFTSGNA  239 (449)
Q Consensus       180 ~~~~------~~~~-------~~~~l~~~r~l~G~g~g~~-~~~~~~~i~~~~------~~~~rg~~~~~~~~~~~~G~~  239 (449)
                      +.+.      ...+       -+..+++.-.+.|.-.-.. .....++=.||.      +++.+.+.++..--.=-+--+
T Consensus        84 ~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckl  163 (432)
T PF06963_consen   84 ASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKL  163 (432)
T ss_pred             HHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHH
Confidence            2211      1101       1122222222222211111 111222223443      334455666666555566789


Q ss_pred             hHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHH----HhcCCCCCCCCCCCHHHHHHHHHhccCccccCCC-------C
Q 013144          240 IGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWL----SATSSTPDRHPQISKYELEYILREKQKPLLMGNK-------H  308 (449)
Q Consensus       240 ~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~  308 (449)
                      ++|++.|.+.+..+.+...++.+...++..++=+    ...+..|+-..+.++++.+...+...........       +
T Consensus       164 laPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (432)
T PF06963_consen  164 LAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFLLARVYNSVPALAVKKRSSESESSSDEESSSESSSDPSILKRLWN  243 (432)
T ss_pred             HHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHhcCCCCCccccccccccccccccchhhHHHHHHH
Confidence            9999999999988988888777777666544322    2222333221111111100000000000000000       0


Q ss_pred             CCCCCchhHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHH
Q 013144          309 KPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLI  388 (449)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g  388 (449)
                      .-+....+|+..+++|.+.......++ ++...++...+..|+... |+++...|.+-....+.++.+.++..++.+|+|
T Consensus       244 ~~~~~~~~w~~Y~~q~vflas~alalL-Y~TVLsf~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riG  321 (432)
T PF06963_consen  244 PLRTIIRGWRTYFRQPVFLASFALALL-YFTVLSFGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIG  321 (432)
T ss_pred             HHHHHhccHHHHHhCHHHHHHHHHHHH-HHHHhcCcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            001123355666766655544444444 444566778889999986 999999999999999999999999999999998


Q ss_pred             Hh
Q 013144          389 QR  390 (449)
Q Consensus       389 ~~  390 (449)
                      ..
T Consensus       322 lv  323 (432)
T PF06963_consen  322 LV  323 (432)
T ss_pred             ch
Confidence            65

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.77  E-value=7.1e-08  Score=91.44  Aligned_cols=113  Identities=15%  Similarity=0.083  Sum_probs=87.8

Q ss_pred             hhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhccch--hHHHHHHHHHHHhh
Q 013144          124 PLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADT--SLLALLAMRAVVGL  201 (449)
Q Consensus       124 ~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~--~~~~l~~~r~l~G~  201 (449)
                      .+.+.+|.++.+.+++.+...++..++.++.|++.||+|+|+.+..+......+..+..+...+  +.+.+++.-.+.++
T Consensus       251 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (366)
T TIGR00886       251 FFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVALFF  330 (366)
T ss_pred             HHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHH
Confidence            4456689999999999999999999999999999999999988887777766666555443212  56665555566666


Q ss_pred             hhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhh
Q 013144          202 AEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSG  237 (449)
Q Consensus       202 g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G  237 (449)
                      +.|...+...+++.+..| +++|.+.|+.+...++|
T Consensus       331 ~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       331 FSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG  365 (366)
T ss_pred             Hhccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence            666666667778888886 79999999999887776

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.74  E-value=3.9e-07  Score=83.27  Aligned_cols=160  Identities=19%  Similarity=0.213  Sum_probs=127.4

Q ss_pred             HHHHHHHHHhHhhhhhhhhhhhhh-cCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhh
Q 013144          105 ALALALCNADRVVMSVAIVPLSLA-HGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPW  183 (449)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~  183 (449)
                      .++.|+...........++.+.++ .|.++.+.+...+.+..+.++|.++.-++..|+...|.+.+..++..+-++..++
T Consensus       242 vl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l  321 (422)
T COG0738         242 VLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVAL  321 (422)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444455555566666555 8999999999999999999999999999999999999999999888888888888


Q ss_pred             ccchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchHHHHHHHH
Q 013144          184 AADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGL  263 (449)
Q Consensus       184 ~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~  263 (449)
                      .  ++...+ .+-++.|+..+..+|...+...+..| ++ ....|..-....+|.++-|.+.|++.|..|-...+.....
T Consensus       322 ~--~g~v~~-~~l~~ig~F~simfPTIfslal~~l~-~~-ts~~s~~l~maivGGAiiP~l~G~i~d~~g~~~~~~~~pl  396 (422)
T COG0738         322 I--GGVVAL-YALFLIGLFNSIMFPTIFSLALKNLG-EH-TSVGSGLLVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPL  396 (422)
T ss_pred             h--cChHHH-HHHHHHHHHhHHHHHHHHHHHHhccC-cc-ccccceeeeeheecchHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            8  775444 44578899999999999999999998 34 3444445555678999999999999999998888886666


Q ss_pred             HHHHHH
Q 013144          264 SGFLWV  269 (449)
Q Consensus       264 ~~~~~~  269 (449)
                      +|.+.+
T Consensus       397 lc~lyV  402 (422)
T COG0738         397 LCYLYV  402 (422)
T ss_pred             HHHHHH
Confidence            666655

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.67  E-value=1.8e-06  Score=79.58  Aligned_cols=154  Identities=16%  Similarity=0.078  Sum_probs=124.3

Q ss_pred             hhhhhhh-hhhcCCCchhhHHHHHHHHHHHHHhhccchhhhh-hcCCchHHHHHHHHHHHHHHHhhhc-cchhHHHHHHH
Q 013144          119 SVAIVPL-SLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVD-YYGGKIIMAWGVALWSLATFLTPWA-ADTSLLALLAM  195 (449)
Q Consensus       119 ~~~~~~l-~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~d-r~Grr~~l~~~~~~~~i~~~~~~~~-~~~~~~~l~~~  195 (449)
                      .+++.++ .+-||++..+..-+...+..|..++-...|++.. |.++|+.-.+++....++..+..++ ...+.+.+...
T Consensus       228 D~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~  307 (403)
T PF03209_consen  228 DVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPG  307 (403)
T ss_pred             HHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHH
Confidence            3444444 4558999999999999999999999999999988 6778888888888888877664443 22678899999


Q ss_pred             HHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhh----------hCchHHHHHHHHHH
Q 013144          196 RAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQ----------AGIFGPFVIFGLSG  265 (449)
Q Consensus       196 r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~----------~gwr~~f~~~~~~~  265 (449)
                      -++.|++.|.......+..-+...+++-|..+|.+.....++..+|..+++.+.|.          .+|-.+|.+-++..
T Consensus       308 ~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll  387 (403)
T PF03209_consen  308 VFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLL  387 (403)
T ss_pred             HHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999998763          23555666665555


Q ss_pred             HHHHHHH
Q 013144          266 FLWVLVW  272 (449)
Q Consensus       266 ~~~~~~~  272 (449)
                      ++.+++.
T Consensus       388 ~~a~~ll  394 (403)
T PF03209_consen  388 LAALVLL  394 (403)
T ss_pred             HHHHHHH
Confidence            5444433

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.66  E-value=2.8e-10  Score=111.23  Aligned_cols=163  Identities=16%  Similarity=0.172  Sum_probs=111.9

Q ss_pred             hhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhh--hc-cch-----h
Q 013144          117 VMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTP--WA-ADT-----S  188 (449)
Q Consensus       117 ~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~--~~-~~~-----~  188 (449)
                      ......+.+.++.+.+..  -+......+...++.++...+.||+|||+.++.+..+.+++.+..+  .. ..+     +
T Consensus       271 ~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (451)
T PF00083_consen  271 FIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWS  348 (451)
T ss_pred             cccccccccccccccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            444456777777777666  2222344455566777778999999999999999999888877764  11 111     2


Q ss_pred             HHHHHHHHHH-HhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchHHHHHHHHHHHH
Q 013144          189 LLALLAMRAV-VGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFL  267 (449)
Q Consensus       189 ~~~l~~~r~l-~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~  267 (449)
                      +..+...... .+++. +..+....+.+|.+|.+.|+.+.++......++.++++.+...+.+..+-...+++.+.++++
T Consensus       349 ~~~i~~~~l~~~~~~~-g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i  427 (451)
T PF00083_consen  349 ILSIVFLALFFAFFSL-GWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLI  427 (451)
T ss_pred             cccceeeeeccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHH
Confidence            2222222221 22222 335666788899999999999999999999999999999888887776634556666666666


Q ss_pred             HHHHHHHhcCCCCCC
Q 013144          268 WVLVWLSATSSTPDR  282 (449)
Q Consensus       268 ~~~~~~~~~~~~~~~  282 (449)
                      ..++.+++.||+..+
T Consensus       428 ~~i~~~~~lpET~g~  442 (451)
T PF00083_consen  428 AIIFVYFFLPETKGK  442 (451)
T ss_pred             HHhheeEEEeeCCCC
Confidence            667777777877653

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.66  E-value=1.1e-06  Score=86.17  Aligned_cols=140  Identities=16%  Similarity=0.026  Sum_probs=107.5

Q ss_pred             hHHHHHHHHHHHHHhhccchhhhhhcCCchH-------HHHHHHHHHHHHHHhh-----hc---cchhHHHHHHHHHHHh
Q 013144          136 SGIVQSSFLWGYLVSPIAGGTLVDYYGGKII-------MAWGVALWSLATFLTP-----WA---ADTSLLALLAMRAVVG  200 (449)
Q Consensus       136 ~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~-------l~~~~~~~~i~~~~~~-----~~---~~~~~~~l~~~r~l~G  200 (449)
                      .+++.+...+...+..++.+++.||+|+|+.       +.+|+++.+++.+..+     +.   ...++++++..-++.|
T Consensus       311 ~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g  390 (489)
T PRK10207        311 PVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQS  390 (489)
T ss_pred             HHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHH
Confidence            4667777778888889999999999999974       7778787777764321     11   1146788888999999


Q ss_pred             hhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHh----------hhCchHHHHHHHHHHHHHHH
Q 013144          201 LAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS----------QAGIFGPFVIFGLSGFLWVL  270 (449)
Q Consensus       201 ~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~----------~~gwr~~f~~~~~~~~~~~~  270 (449)
                      +|.+...+...+++.+..|++.++.++|++.....+|..+|..++.....          .-...+.|...++.+++..+
T Consensus       391 ~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v  470 (489)
T PRK10207        391 LGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAV  470 (489)
T ss_pred             HHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999888865521          01245666666666655555


Q ss_pred             HHHHh
Q 013144          271 VWLSA  275 (449)
Q Consensus       271 ~~~~~  275 (449)
                      +.+..
T Consensus       471 ~~~~~  475 (489)
T PRK10207        471 VMALM  475 (489)
T ss_pred             HHHHH
Confidence            44443

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.65  E-value=1.3e-06  Score=84.10  Aligned_cols=151  Identities=12%  Similarity=-0.002  Sum_probs=100.5

Q ss_pred             hhhhhhhhhh-hhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhc---cchhHHHH
Q 013144          117 VMSVAIVPLS-LAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWA---ADTSLLAL  192 (449)
Q Consensus       117 ~~~~~~~~l~-~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~---~~~~~~~l  192 (449)
                      .+....|.+. +.+|.++.+.++.......+..++..+.+++.++.++++.+.....+..++.++....   ..++++.+
T Consensus       236 ~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~~~  315 (413)
T PRK15403        236 SWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWPHVWLWS  315 (413)
T ss_pred             HHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHccccHHHH
Confidence            4444556554 4569999999999888888888888888887755555444333333333333322211   11445556


Q ss_pred             HHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchHHHHHHHHHHHHHH
Q 013144          193 LAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWV  269 (449)
Q Consensus       193 ~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~  269 (449)
                      ++..++.|+|.+...+......- .-....+|++.++.+.....+..+++.+++++.++ +-++.|...+++..+..
T Consensus       316 ~~~~~l~~~G~~~~~p~~~~~al-~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~  390 (413)
T PRK15403        316 VLGTSLYAFGIGLIFPTLFRFTL-FSNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFN-GGRLPFHLLAVVAGVIV  390 (413)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHh-ccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHHHHH
Confidence            77888899999888887775332 22233579999999998888999999999988766 66777766655544433

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.64  E-value=3.6e-06  Score=79.88  Aligned_cols=106  Identities=15%  Similarity=0.135  Sum_probs=94.5

Q ss_pred             HHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccC
Q 013144          140 QSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFP  219 (449)
Q Consensus       140 ~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~  219 (449)
                      .++....+.++.++.+.+.|+.|.|+.|.++..++....+..-+   .|-+.+++.-.+.|+|.+..+..--.+++|..+
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~---~N~y~~yfssallG~Gaallw~GqG~ylt~~st  132 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF---PNSYYLYFSSALLGFGAALLWTGQGGYLTSNST  132 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh---cchHHHHHHHHHhhhhHHheecccceehhhcCC
Confidence            67778888899999999999999999999999999988877654   578888999999999999999999999999999


Q ss_pred             cchhhHHHHHHHHhhhhhhHhHHHHHHHH
Q 013144          220 QTERARAVAIAMGGFTSGNAIGLVLSPIL  248 (449)
Q Consensus       220 ~~~rg~~~~~~~~~~~~G~~~g~~l~~~l  248 (449)
                      ++++.+..++.......+.++|..+...+
T Consensus       133 ~~tie~Nisi~Wai~~~~li~Ggi~l~~~  161 (461)
T KOG3098|consen  133 RETIERNISIFWAIGQSSLIIGGIILFIY  161 (461)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhhhHhheee
Confidence            99999999999999988888887665444

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=98.64  E-value=1.1e-05  Score=75.28  Aligned_cols=137  Identities=15%  Similarity=0.176  Sum_probs=105.0

Q ss_pred             hHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhhhHHHHHHh
Q 013144          136 SGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVA  215 (449)
Q Consensus       136 ~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~  215 (449)
                      .+.+.-+-.+...+..+.+.++.+|+.-+.=..++.++..++.++.+++  ++.+.=+++-++.+++.|........+..
T Consensus        61 t~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~--~~v~~~l~Gv~las~ssg~GE~tfL~lt~  138 (402)
T PF02487_consen   61 TGAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFS--PSVWVRLLGVVLASLSSGLGEVTFLSLTH  138 (402)
T ss_pred             chHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeec--cchhHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence            3445556667777777778888999886666666777888899999998  99999999999999999988888888654


Q ss_pred             hccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCc--hHHHHHHHHHHHHHHHHHHHhcCCCC
Q 013144          216 RWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGI--FGPFVIFGLSGFLWVLVWLSATSSTP  280 (449)
Q Consensus       216 ~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gw--r~~f~~~~~~~~~~~~~~~~~~~~~~  280 (449)
                       .+++    ..++-++++.+.++++|+..-..+.+ .|+  |..+.+...+.++..+..++..|.++
T Consensus       139 -~y~~----~~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~L~~~~  199 (402)
T PF02487_consen  139 -FYGK----SSLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFLLPSPP  199 (402)
T ss_pred             -hcCc----cccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence             5653    35788999999999999888766666 565  77888877777666666666665443

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=98.61  E-value=0.00017  Score=69.81  Aligned_cols=280  Identities=11%  Similarity=-0.005  Sum_probs=166.7

Q ss_pred             HHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHH-HHHHhhccchhhhhhcCCchHHHHHHHHHH
Q 013144           97 RVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLW-GYLVSPIAGGTLVDYYGGKIIMAWGVALWS  175 (449)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~-~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~  175 (449)
                      .+..+..+.+..++..++....-..-..+.-.- ..+..+.++=....+ +..+...+..+++++++|.+++-+....+.
T Consensus        22 E~~k~~~l~~m~f~i~f~y~~lR~~KD~lvvt~-~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~  100 (491)
T PF03219_consen   22 ELKKFLPLALMFFFILFNYTILRDLKDTLVVTA-QGAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFL  100 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCeEEEec-CChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            344555566666666655444433332222111 145566666554444 344556778999999999998887777777


Q ss_pred             HHHHHhhhc--c-----ch----------------------hHHHHHHHHHHHhhhhhhhhh-HHHHHHhhccCcchhhH
Q 013144          176 LATFLTPWA--A-----DT----------------------SLLALLAMRAVVGLAEGVALP-AMNNMVARWFPQTERAR  225 (449)
Q Consensus       176 i~~~~~~~~--~-----~~----------------------~~~~l~~~r~l~G~g~g~~~~-~~~~~i~~~~~~~~rg~  225 (449)
                      ....+.++.  |     ++                      +.|.+.+..+..-+-.....+ .-..+.+|.++.+|-.+
T Consensus       101 ~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKR  180 (491)
T PF03219_consen  101 GFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKR  180 (491)
T ss_pred             HHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            666665553  0     01                      122223333333333333333 45788999999999999


Q ss_pred             HHHHHHHhhhhhhHhHHHHHHHHHh---------hhCchHHHHH----HHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHH
Q 013144          226 AVAIAMGGFTSGNAIGLVLSPILMS---------QAGIFGPFVI----FGLSGFLWVLVWLSATSSTPDRHPQISKYELE  292 (449)
Q Consensus       226 ~~~~~~~~~~~G~~~g~~l~~~l~~---------~~gwr~~f~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (449)
                      ..+++..+.++|.+++..+..++.+         ...|...+..    ..+.+++...+.....++..+++...+...  
T Consensus       181 fYpl~g~ganigli~sG~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~v~~~g~~i~~~~~~~~~~vl~~~~~~~~~~--  258 (491)
T PF03219_consen  181 FYPLFGLGANIGLIFSGQLTSYFSSFLRKSLPAGVDAWELSLNSLMGIVLILGIVIILLYRYMNKNVLTDPRFYPSAK--  258 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccchhhh--
Confidence            9999999999999999999888877         1235543322    122222222222222222111111100000  


Q ss_pred             HHHHhccCccccCCCCCCCCCchhHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccc----hhhHhhH
Q 013144          293 YILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQ----ASWFSAV  368 (449)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~----~~~~~~~  368 (449)
                                ....++++.+....++.++|+|.+..+++...+++...+.+....-..+++.+. ++.+    .|.....
T Consensus       259 ----------~~kk~k~k~s~~es~k~l~kS~yL~~Ia~lvi~Ygi~inLvE~~wK~~lk~~~~-~~~~ysafmG~~~~~  327 (491)
T PF03219_consen  259 ----------KKKKKKPKMSLKESFKLLLKSKYLLCIALLVIAYGISINLVEVVWKSQLKQLYP-DPNDYSAFMGKFSSW  327 (491)
T ss_pred             ----------cccccCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CchHHHHHHHHHHHH
Confidence                      011233444556788889999999999998888888888777666666666443 3322    3445556


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Q 013144          369 PWSVMAFTGYLGGLLSDMLIQR  390 (449)
Q Consensus       369 ~~~~~~~~~~~~g~l~dr~g~~  390 (449)
                      .++..++..++++.+.+|+|-+
T Consensus       328 tGivtii~~~l~~~iir~~GW~  349 (491)
T PF03219_consen  328 TGIVTIIMMFLSSNIIRRFGWR  349 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHH
Confidence            6666777778888999988877

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=98.61  E-value=2.3e-06  Score=69.08  Aligned_cols=109  Identities=14%  Similarity=0.168  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhc
Q 013144          138 IVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARW  217 (449)
Q Consensus       138 ~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~  217 (449)
                      .-.++......+++++.+.+.+++|.|+.++++.+.+.+-.... +.  ++.+.++.+-++.|++.+..++....++.+.
T Consensus        41 ~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~--~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~  117 (156)
T PF05978_consen   41 YSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FY--PNSYTLYPASALLGFGAALLWTAQGTYLTSY  117 (156)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-Hh--hhHHHHHHHHHHHhhhhHHhhHhhhHHHHHc
Confidence            34455666677777888899999999999999999998766554 44  7889999999999999999999999999999


Q ss_pred             cCcchhhHHHHHHHHhhhhhhHhHHHHHHHHH
Q 013144          218 FPQTERARAVAIAMGGFTSGNAIGLVLSPILM  249 (449)
Q Consensus       218 ~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~  249 (449)
                      .++++|++..+++......+.++|.++.-.+.
T Consensus       118 s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~  149 (156)
T PF05978_consen  118 STEETIGRNTGIFWAIFQSSLIFGNLFLFFIF  149 (156)
T ss_pred             CCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999988888887765553

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.60  E-value=2.7e-07  Score=88.99  Aligned_cols=176  Identities=13%  Similarity=0.059  Sum_probs=121.3

Q ss_pred             HHHHHHHHHHHHHHHhHhhhhhhhhhh-hhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCC---------chHHH
Q 013144           99 KVVSMLALALALCNADRVVMSVAIVPL-SLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGG---------KIIMA  168 (449)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Gr---------r~~l~  168 (449)
                      ..+..+++..+........+...+|.. .+-+|.+..+.|++.++..+...+..+++|.++||.-+         |-.-.
T Consensus       258 ~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~  337 (466)
T KOG2532|consen  258 PPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNT  337 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHh
Confidence            345566666676666666766667775 45689999999999999999999999999999998855         22334


Q ss_pred             HHHHHHHHHHHHhhhccchhH-HHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHH
Q 013144          169 WGVALWSLATFLTPWAADTSL-LALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPI  247 (449)
Q Consensus       169 ~~~~~~~i~~~~~~~~~~~~~-~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~  247 (449)
                      ++....+++.+..++..+.+. ..+.+.-+..++ .|...+..+.-..|.. +++-+..+|+.+....+..+++|.+.+.
T Consensus       338 i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~-~g~~~~Gf~~~~~~~a-pq~a~~l~g~~~~~~~~~~~~~P~~vg~  415 (466)
T KOG2532|consen  338 IAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGL-SGFNISGFYKNHQDIA-PQHAGFVMGIINFVGALAGFIAPLLVGI  415 (466)
T ss_pred             HHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHH-cccchhhhHhhhhhcc-chHHHHHHHHHHHHHHHHHHHHHHheee
Confidence            444455555555555532122 222222222222 2222333333344445 5888999999999999999999999999


Q ss_pred             HHh---hhCchHHHHHHHHHHHHHHHHHHHhc
Q 013144          248 LMS---QAGIFGPFVIFGLSGFLWVLVWLSAT  276 (449)
Q Consensus       248 l~~---~~gwr~~f~~~~~~~~~~~~~~~~~~  276 (449)
                      +..   ...||++|++.+++.++..+++.++-
T Consensus       416 ~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f~  447 (466)
T KOG2532|consen  416 IVTDNTREEWRIVFLIAAGILIVGNIIFLFFG  447 (466)
T ss_pred             EeCCCCHHHHHHHHHHHHHHHHHhchheeEee
Confidence            984   34799999999988888776655554

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.57  E-value=1.7e-07  Score=86.68  Aligned_cols=182  Identities=15%  Similarity=0.044  Sum_probs=129.3

Q ss_pred             HHHHHHHHHHHHHHHhHhhhhhhhhhhhhhcCCCchhhHH--------HHHHHHH-HHHHhhccchhhhhhcCCchHHHH
Q 013144           99 KVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGI--------VQSSFLW-GYLVSPIAGGTLVDYYGGKIIMAW  169 (449)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~--------~~s~~~~-~~~~~~~~~G~l~dr~Grr~~l~~  169 (449)
                      ..+...+...|+.-...+..+.....+.+.++..+.....        ...+... ++..+-.+...++|+.|||+..+.
T Consensus       304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~  383 (538)
T KOG0252|consen  304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLM  383 (538)
T ss_pred             HHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHh
Confidence            5566667777777666777777777787777664443322        2222233 333477788899999999999999


Q ss_pred             HHHHHHHHHHHhhhccch--hHHHHHHHHHHHhhhh-hhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHH
Q 013144          170 GVALWSLATFLTPWAADT--SLLALLAMRAVVGLAE-GVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSP  246 (449)
Q Consensus       170 ~~~~~~i~~~~~~~~~~~--~~~~l~~~r~l~G~g~-g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~  246 (449)
                      +.+++.+..+..+....+  +-..+++...+..+.. -+.......+-+|.+|.+-|+.+-|+..+..-.|.++|...-.
T Consensus       384 GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~  463 (538)
T KOG0252|consen  384 GFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFL  463 (538)
T ss_pred             hHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhh
Confidence            999999999988877221  1222222222222221 1223445566789999999999999999999999999999999


Q ss_pred             HHHh-----hhCchHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 013144          247 ILMS-----QAGIFGPFVIFGLSGFLWVLVWLSATSSTPD  281 (449)
Q Consensus       247 ~l~~-----~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~  281 (449)
                      .+.+     ..|.|++|++.+...++..+..+++ ||+..
T Consensus       464 ~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~-pEtk~  502 (538)
T KOG0252|consen  464 YLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLI-PETKG  502 (538)
T ss_pred             HhhhccCCccccchHHHHHHHHHHHHhHheeEEe-ecccc
Confidence            9998     7899999999999888877766655 45443

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.57  E-value=1.6e-06  Score=74.56  Aligned_cols=141  Identities=15%  Similarity=0.088  Sum_probs=95.3

Q ss_pred             HhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhccchhHHHHHH
Q 013144          115 RVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLA  194 (449)
Q Consensus       115 ~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~  194 (449)
                      ....+|..-.+-+.++....++|.+........++...+.|-++|+.|||+.-+.-++.+.++++- -.+  +.|-.+++
T Consensus        53 DWLQgPYvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCiT-KhS--pqYkVLmV  129 (454)
T KOG4332|consen   53 DWLQGPYVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCIT-KHS--PQYKVLMV  129 (454)
T ss_pred             hhhcCceeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHHh-hcC--CceEEEee
Confidence            334556666677888888999999988888888999999999999999999655555555444432 234  88999999


Q ss_pred             HHHHHhhhhhhhhhHHHHHH-hhccCcchhhHHHHHHH--------HhhhhhhHhHHHHHHHHHhhhC--chHHHHH
Q 013144          195 MRAVVGLAEGVALPAMNNMV-ARWFPQTERARAVAIAM--------GGFTSGNAIGLVLSPILMSQAG--IFGPFVI  260 (449)
Q Consensus       195 ~r~l~G~g~g~~~~~~~~~i-~~~~~~~~rg~~~~~~~--------~~~~~G~~~g~~l~~~l~~~~g--wr~~f~~  260 (449)
                      +|++-|+..+..+.+--++. .|.-  ++|+.-.-+..        .+..+-.+++.+.+..+.+.++  --.+|-.
T Consensus       130 GR~LGGiaTsLLFSaFEsWliaEHn--ekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdA  204 (454)
T KOG4332|consen  130 GRVLGGIATSLLFSAFESWLIAEHN--EKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDA  204 (454)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHhh--hccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHH
Confidence            99999999998888777654 4443  23332222221        2233344555556666666554  3344433

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=98.54  E-value=2.6e-07  Score=65.31  Aligned_cols=80  Identities=20%  Similarity=0.196  Sum_probs=73.6

Q ss_pred             HHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhccchhHH
Q 013144          111 CNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLL  190 (449)
Q Consensus       111 ~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~  190 (449)
                      .+..+..+++.+|.+++|.++|.++.||+.++..+|+.+|++...++.++..+++.+..+.+...+..+.+++.  ++.+
T Consensus         4 mGigRFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~--~~~~   81 (85)
T PF06779_consen    4 MGIGRFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALT--HSFW   81 (85)
T ss_pred             hhhHHHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH--hchH
Confidence            35677889999999999999999999999999999999999999999999888999999999999999999998  7766


Q ss_pred             HH
Q 013144          191 AL  192 (449)
Q Consensus       191 ~l  192 (449)
                      .+
T Consensus        82 ~w   83 (85)
T PF06779_consen   82 LW   83 (85)
T ss_pred             HH
Confidence            54

Note that many members are hypothetical proteins.

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.49  E-value=6.7e-06  Score=80.93  Aligned_cols=149  Identities=13%  Similarity=0.090  Sum_probs=110.5

Q ss_pred             HHHHHHHHHHHHHHhHhhhhhhhhhhhhh-cCCCc---hhhHHHHHHHHHHHHHhhccchhhhhhcCCc-hHHHHHHHHH
Q 013144          100 VVSMLALALALCNADRVVMSVAIVPLSLA-HGWSR---SFSGIVQSSFLWGYLVSPIAGGTLVDYYGGK-IIMAWGVALW  174 (449)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~---~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr-~~l~~~~~~~  174 (449)
                      .+.+..+..++.++.........|..... ++-+.   ...++....+.++..+++.+.|.+.-+++|- +.++++.+++
T Consensus       311 ~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~  390 (599)
T PF06609_consen  311 GFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLM  390 (599)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHH
Confidence            34444455555555555666666665443 34333   3578888899999999999999999988864 4556777777


Q ss_pred             HHHHHHhhhccchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHH
Q 013144          175 SLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPIL  248 (449)
Q Consensus       175 ~i~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l  248 (449)
                      .++..+++....+|....+..-++.|+|.|...........-..|+++-|.+.++..+...+|+.+|..+...+
T Consensus       391 ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I  464 (599)
T PF06609_consen  391 TAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAI  464 (599)
T ss_pred             HHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            76655555443356666677788999999998888888888888999999999999999999999988776444

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=98.44  E-value=2.4e-06  Score=76.15  Aligned_cols=281  Identities=15%  Similarity=0.058  Sum_probs=177.7

Q ss_pred             hcCCCchhhH-HHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhh
Q 013144          128 AHGWSRSFSG-IVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVA  206 (449)
Q Consensus       128 ~~~~~~~~~g-~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~  206 (449)
                      +.++++.++. =+.-...-.+.+.-++.=.+.|..--|+++++-.+.......+.-+.  ++.+.+=+.-++.|...+. 
T Consensus        35 ~~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g--~sV~~mQvlE~FyG~~tAa-  111 (433)
T KOG3810|consen   35 DKNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFG--PSVKAMQVLEFFYGPATAA-  111 (433)
T ss_pred             CCCccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhc--CCchheeeehhhcChHHHH-
Confidence            4456655543 11222233334444445568999999999888888777788888888  9999999999999998765 


Q ss_pred             hhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhC--chHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 013144          207 LPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG--IFGPFVIFGLSGFLWVLVWLSATSSTPDRHP  284 (449)
Q Consensus       207 ~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~g--wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (449)
                      ..+-++++-+..+++++.++.+..-+..-.|..+|..++..+.....  +...-++......+..+ +.++.|..++..-
T Consensus       112 EIAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~-~A~fLP~v~rSl~  190 (433)
T KOG3810|consen  112 EIAYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVL-LALFLPRVKRSLY  190 (433)
T ss_pred             HHhhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHH-HHhhCCCCchhhh
Confidence            67788889888999999999999999999999999999988876433  33333333222222223 3334444442211


Q ss_pred             CCCHHHHHHHHHhccCccccCCCCCCCC-----------CchhHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013144          285 QISKYELEYILREKQKPLLMGNKHKPAT-----------VIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNF  353 (449)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (449)
                      ...++++.. ..+.      ++...+.+           .+..+....++|++....+...+...+++....+......+
T Consensus       191 f~~~~~~~~-v~~~------e~~~~~~~~~~~l~~~~~~l~~~l~~~y~np~ll~WSlWwAl~scg~~QV~nY~Q~LW~~  263 (433)
T KOG3810|consen  191 FHRLEDKIS-VGDL------EEMNPQASYMSYLRGAFVLLWRDLQECYSNPRLLKWSLWWALASCGYYQVTNYTQILWKE  263 (433)
T ss_pred             hhcccccce-eccc------hhcCccchhhHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHhhchhHHHHHHHHHHHHh
Confidence            111111000 0000      00111111           12244566688999999999999888998888888777776


Q ss_pred             hhCCcccch----hhHhhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHhHHHHHHHHHhhcccchhHHHHHH
Q 013144          354 VYHIDLRQA----SWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWL  429 (449)
Q Consensus       354 ~~g~s~~~~----~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (449)
                      ..   +..+    |..=++..+.++++.+..|.+.-.+.|.       +..++.++.+..+..++.+....+.|...+..
T Consensus       264 ~~---~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~-------g~~ll~~~s~~~agllf~m~~t~~Iw~~Ya~y  333 (433)
T KOG3810|consen  264 VA---PNPANVYNGAVEAVSTLLGAIAALAAGYLNINWNRW-------GDLLLAVGSAVQAGLLFIMAQTQHIWVCYAGY  333 (433)
T ss_pred             hC---CCchhhhcCHHHHHHHHHHHHHHHHHHheeeccchh-------hHHHHHHHHHHhhhhhhhhhcccceehhhhhH
Confidence            52   2222    3344455566677777777775555444       35677777777777777777777766444333

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.44  E-value=7.5e-06  Score=81.28  Aligned_cols=177  Identities=16%  Similarity=0.092  Sum_probs=114.4

Q ss_pred             HHHHHHHHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhh
Q 013144          104 LALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPW  183 (449)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~  183 (449)
                      +.+..+.............+.+.+..|.+... .+...+..+...++..+...+.||+|||+.++.+...+.++.++++.
T Consensus       300 ~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~  378 (513)
T KOG0254|consen  300 LLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAV  378 (513)
T ss_pred             HHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHH
Confidence            33333333344445555667777777766443 55555666667777777799999999999999999999999988765


Q ss_pred             ccch-----------hHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhh
Q 013144          184 AADT-----------SLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQA  252 (449)
Q Consensus       184 ~~~~-----------~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~  252 (449)
                      ....           ....+...-+.......+..+....+.+|.+|.+-|+++.++......+...+-......+.+..
T Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~  458 (513)
T KOG0254|consen  379 VGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEAL  458 (513)
T ss_pred             HHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            5100           11222222222222233335566678899999999999999988777766655544444444444


Q ss_pred             CchHHHHHHHHHHHHHHH-HHHHhcCCCCC
Q 013144          253 GIFGPFVIFGLSGFLWVL-VWLSATSSTPD  281 (449)
Q Consensus       253 gwr~~f~~~~~~~~~~~~-~~~~~~~~~~~  281 (449)
                      ++...|...+..+.+... ..++..||+..
T Consensus       459 ~~~~~f~~f~~~~~~~~~~fv~~~~pETkg  488 (513)
T KOG0254|consen  459 GIGGTFGYFGGICLLSLIIFVFFFVPETKG  488 (513)
T ss_pred             cccchHHHHHHHHHHHHHHHheEEcccCCC
Confidence            456677776666666666 56666666654

>PTZ00207 hypothetical protein; Provisional

Probab=98.40  E-value=9.9e-06  Score=80.15  Aligned_cols=173  Identities=12%  Similarity=0.010  Sum_probs=125.2

Q ss_pred             HHHHHHHHHHHHHHhHhhhhhhhhhhhhhc-CC-CchhhHH-HHHHHHHHHHHhhccchhhhhh---------cCCchHH
Q 013144          100 VVSMLALALALCNADRVVMSVAIVPLSLAH-GW-SRSFSGI-VQSSFLWGYLVSPIAGGTLVDY---------YGGKIIM  167 (449)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~-~~~~~g~-~~s~~~~~~~~~~~~~G~l~dr---------~Grr~~l  167 (449)
                      -+++++...++.......+..-+.++.+.+ |. .+.+... +++++.++..+|.+..|.+...         +.|--.+
T Consensus       354 d~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l  433 (591)
T PTZ00207        354 RLWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIAL  433 (591)
T ss_pred             hHHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHH
Confidence            344555555555555555556677788888 65 2232233 7899999999999999988721         2222234


Q ss_pred             HHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhH-HHHHH
Q 013144          168 AWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIG-LVLSP  246 (449)
Q Consensus       168 ~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g-~~l~~  246 (449)
                      .+..+ +.++.++.++.  -....+++.-++.|++.|..++.....++|+|. |+-|+-..+......+|..+- ..+.|
T Consensus       434 ~~~~~-~~~~~lll~~~--~p~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G  509 (591)
T PTZ00207        434 FIPSV-CIITMLTLFLT--LPKAALPLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYG  509 (591)
T ss_pred             HHHHH-HHHHHHHHHHH--CCccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHH
Confidence            44444 67777776666  333789999999999999999999999999998 999999999999999998776 56777


Q ss_pred             HHHhhh----------C---chHHHHHHHHHHHHHHHHHHHhc
Q 013144          247 ILMSQA----------G---IFGPFVIFGLSGFLWVLVWLSAT  276 (449)
Q Consensus       247 ~l~~~~----------g---wr~~f~~~~~~~~~~~~~~~~~~  276 (449)
                      .+.+.-          |   +|.+|++.+.+++...+....+.
T Consensus       510 ~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~  552 (591)
T PTZ00207        510 EWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVH  552 (591)
T ss_pred             HHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhhee
Confidence            776532          2   78899998888887777655543

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.40  E-value=2.7e-05  Score=75.35  Aligned_cols=142  Identities=12%  Similarity=0.001  Sum_probs=114.8

Q ss_pred             HHHHHHHHHHHHhhccchhhhhhcCC-chHHHHHHHHHHHHHHHhhhccchh---------------------HHHHHHH
Q 013144          138 IVQSSFLWGYLVSPIAGGTLVDYYGG-KIIMAWGVALWSLATFLTPWAADTS---------------------LLALLAM  195 (449)
Q Consensus       138 ~~~s~~~~~~~~~~~~~G~l~dr~Gr-r~~l~~~~~~~~i~~~~~~~~~~~~---------------------~~~l~~~  195 (449)
                      |....+.+...+.+++.-++.+|+|+ |++..++.++.+++.....+.  ++                     .+..++.
T Consensus       309 ~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  386 (477)
T TIGR01301       309 FGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLV--TYVAKNSRYYDGDGESLPPPTGIKASALIV  386 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHH--HhhhhccccccccccccCcchhhHHHHHHH
Confidence            44455666666777788889999995 777799988888887777655  32                     3777888


Q ss_pred             HHHHhhhhhhhhhHHHHHHhhccCc--chhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhC--chHHHHHHHHHHHHHHHH
Q 013144          196 RAVVGLAEGVALPAMNNMVARWFPQ--TERARAVAIAMGGFTSGNAIGLVLSPILMSQAG--IFGPFVIFGLSGFLWVLV  271 (449)
Q Consensus       196 r~l~G~g~g~~~~~~~~~i~~~~~~--~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~g--wr~~f~~~~~~~~~~~~~  271 (449)
                      -.+.|+..+.....-++++++..++  ++.|..+|+++.+..+.+++..+..|.+.+.+|  -.+.+.+.++..++..+.
T Consensus       387 ~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~  466 (477)
T TIGR01301       387 FAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLL  466 (477)
T ss_pred             HHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHH
Confidence            8999999999999999999999984  556999999999999999999988888766655  566788888888888888


Q ss_pred             HHHhcCCCCC
Q 013144          272 WLSATSSTPD  281 (449)
Q Consensus       272 ~~~~~~~~~~  281 (449)
                      .++..|+++.
T Consensus       467 ~~~~~~~~~~  476 (477)
T TIGR01301       467 ALILLPRPRV  476 (477)
T ss_pred             HHHhCCCCCC
Confidence            8888877654

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=98.40  E-value=2e-05  Score=71.38  Aligned_cols=263  Identities=13%  Similarity=0.029  Sum_probs=155.6

Q ss_pred             HHHHHHHHHHHHHHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhh-----hcCCchHHHH-HH
Q 013144           98 VKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVD-----YYGGKIIMAW-GV  171 (449)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~d-----r~Grr~~l~~-~~  171 (449)
                      ...+..+.+.+.+.+...+... .+|.+.+.-|.|-++.+...-++.  -..--++|.++.|     |+||||.-++ +.
T Consensus        30 ~~~illLl~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~a~fS~ay~--P~sLKllWaPiVDs~y~k~~GrrksWvvp~q  106 (510)
T KOG3574|consen   30 RSSILLLLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQAIFSFAYW--PFSLKLLWAPIVDSVYSKRFGRRKSWVVPCQ  106 (510)
T ss_pred             hhhHHHHHHHHHHcCCchhHhh-hhHHHhcCCCcchhhhhhhhhhhh--HHHHHHHHHhhhHHHHHHhhccccceeeehH
Confidence            3455666677777777777777 889988877888777665543221  1234567888999     9999984332 22


Q ss_pred             HHHHHHHHHhhhc---------cchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHH
Q 013144          172 ALWSLATFLTPWA---------ADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGL  242 (449)
Q Consensus       172 ~~~~i~~~~~~~~---------~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~  242 (449)
                      .+.+....+.+.-         ..++...+....++.-+..+.-..+.-.+.-.+..+++-|.+......+.+.|.++|.
T Consensus       107 ~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~  186 (510)
T KOG3574|consen  107 YLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGN  186 (510)
T ss_pred             HHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhc
Confidence            2222222222211         1134444545556667777777777777777888888887777776666666666665


Q ss_pred             HHHHHHHh-------hhCch---------HHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccCccccCC
Q 013144          243 VLSPILMS-------QAGIF---------GPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGN  306 (449)
Q Consensus       243 ~l~~~l~~-------~~gwr---------~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (449)
                      .+--.+-.       ..+|.         ..+++.+.+.++...+..+..+|+++...+   +                .
T Consensus       187 ~ifLaL~s~dF~N~y~rs~P~~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke~~~~~~~---e----------------~  247 (510)
T KOG3574|consen  187 VVFLALESPDFCNTYLRSIPLDQGFITLAGYLWFWGALFIVATTLVALLKKENDESVDE---E----------------L  247 (510)
T ss_pred             ceeeEecChhhhhHHHhcCcCccceEEhhHHHHHHHHHHHHHHHHHHHhcCCCchhhhh---h----------------h
Confidence            44322221       11222         233444555555555555554444432100   0                0


Q ss_pred             CCCCCCCchhHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHH
Q 013144          307 KHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDM  386 (449)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr  386 (449)
                      +..-+....-++++++-|.+...+......=.++.+-....+.-+.| .|++..+.++...+.    +..+++.++...|
T Consensus       248 ~~~i~~~yk~l~~vLklk~v~~la~i~lt~K~gf~a~da~t~LkLle-~Gv~ke~Lal~~v~~----~plqI~l~~~~gk  322 (510)
T KOG3574|consen  248 ELGIHESYKLLRDVLKLKSVRWLAGILLTGKLGFQAADALTSLKLLE-HGVPKEELALIAVPL----VPLQIALPLYIGK  322 (510)
T ss_pred             hcCHHHHHHHHHHHHcCccHHHHHHHHHHHHHHhhhhhhccchHHHH-cCCChhHheeeeeeh----hhHHHhhhhhhee
Confidence            00111112245677788888888888777778888888888888888 499988877766443    3344444444444


Q ss_pred             H
Q 013144          387 L  387 (449)
Q Consensus       387 ~  387 (449)
                      +
T Consensus       323 ~  323 (510)
T KOG3574|consen  323 W  323 (510)
T ss_pred             e
Confidence            3

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.31  E-value=2.9e-06  Score=59.60  Aligned_cols=71  Identities=18%  Similarity=0.108  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHH
Q 013144          104 LALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALW  174 (449)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~  174 (449)
                      +-..+++.+...+...|.++...++.|+|+.++|.+.++..+...++++++|.++||+++++.++....+.
T Consensus         5 lk~~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~   75 (77)
T PF12832_consen    5 LKAFYFFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM   75 (77)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence            34455666666677778888888899999999999999999999999999999999999999877766554

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=98.27  E-value=0.0042  Score=58.91  Aligned_cols=279  Identities=10%  Similarity=-0.020  Sum_probs=169.9

Q ss_pred             HHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhhcC---CCchhhHHHHHHHHH-HHHHhhccchhhhhhcCCchHHHHHHH
Q 013144           97 RVKVVSMLALALALCNADRVVMSVAIVPLSLAHG---WSRSFSGIVQSSFLW-GYLVSPIAGGTLVDYYGGKIIMAWGVA  172 (449)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~g~~~s~~~~-~~~~~~~~~G~l~dr~Grr~~l~~~~~  172 (449)
                      .+..+..+.+..++..+.....    -.+.+.+.   ..+..+.++-+...+ +..+..++.+++.+++.+.+++-+.+.
T Consensus        25 E~~kflpl~Ll~f~I~~ny~~l----R~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~  100 (509)
T COG3202          25 ELKKFLPLALLFFCILFNYNLL----RSLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILG  100 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH----HHhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence            4445555555555555554443    34444443   356677888888888 777888899999999999999988888


Q ss_pred             HHHHHHHHhhhcc-------chh-----------------------HHHHHHHHHHHhhhhhhhhh-HHHHHHhhccCcc
Q 013144          173 LWSLATFLTPWAA-------DTS-----------------------LLALLAMRAVVGLAEGVALP-AMNNMVARWFPQT  221 (449)
Q Consensus       173 ~~~i~~~~~~~~~-------~~~-----------------------~~~l~~~r~l~G~g~g~~~~-~~~~~i~~~~~~~  221 (449)
                      .+....+++++.-       +++                       .|...+..++.-+-...... .-.....|.+..+
T Consensus       101 ~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~  180 (509)
T COG3202         101 FFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIE  180 (509)
T ss_pred             HHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence            8888877777641       011                       13333333333333333333 5567788999999


Q ss_pred             hhhHHHHHHHHhhhhhhHhHHHHHHHHHhhh-C---------chHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHH
Q 013144          222 ERARAVAIAMGGFTSGNAIGLVLSPILMSQA-G---------IFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYEL  291 (449)
Q Consensus       222 ~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~-g---------wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (449)
                      |-.|..++++.+.+++..++..+..++..+. .         .+..+.+.+..+++.+.+..+.-+...+++.......+
T Consensus       181 eakRFy~lf~l~~ni~lllsg~~~~~~~k~~~~~~~~~~~~~~~~~~~vi~~~~~i~~~l~~~~~r~il~~~~f~~~~~~  260 (509)
T COG3202         181 EAKRFYPLFGLGANISLLLSGEVTSWLSKHRDALASEFKDLLLQILFIVIVILGIIAILLYRYINRNVLTDPLFYLRAKK  260 (509)
T ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHHHhhchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhHHHhc
Confidence            9999999999999999999998888886521 1         23334444444444444444443333332221100000


Q ss_pred             HHHHHhccCccccCCCCCCCCCchhHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccch---hhHhhH
Q 013144          292 EYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQA---SWFSAV  368 (449)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~---~~~~~~  368 (449)
                                 .++.++.+......++.+.|+|.++.+++...+++.+.+.+....-.-.++.+.......   |.+...
T Consensus       261 -----------kk~~~k~k~~~~~s~k~i~~SkyL~~ial~vl~Y~v~inLvE~~wKs~ik~~~~~~~~~~~f~~~~~~~  329 (509)
T COG3202         261 -----------KKKKKKLKLGLIESFKMILRSKYLGAIALLVLAYGVSINLVEGVWKSGIKELYPTTNEYTAFMGRFQIW  329 (509)
T ss_pred             -----------ccccccccCcHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcCChhHHHHHHHHHHHH
Confidence                       001222334455678888899999999988888888877776444343444333332233   333444


Q ss_pred             HHHH-HHHHHHHHHHHHHHHHHh
Q 013144          369 PWSV-MAFTGYLGGLLSDMLIQR  390 (449)
Q Consensus       369 ~~~~-~~~~~~~~g~l~dr~g~~  390 (449)
                      .++. .++...+++.+.+|.|..
T Consensus       330 tgvv~~v~~~~~~s~~ir~~GW~  352 (509)
T COG3202         330 TGVVSLVVFLFPGSNLIRRVGWF  352 (509)
T ss_pred             HHHHHHHHHHhhhHHHHHHhhHH
Confidence            4444 344556778888888765

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.18  E-value=3.8e-06  Score=81.41  Aligned_cols=160  Identities=13%  Similarity=0.085  Sum_probs=105.4

Q ss_pred             HHHHHHHHHHHHHHhHhhhhhhhhhhhhh-cCCCchhhHHHHHHHHHHHHHhhccchhhhhh----cCCchHHHHHHHHH
Q 013144          100 VVSMLALALALCNADRVVMSVAIVPLSLA-HGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDY----YGGKIIMAWGVALW  174 (449)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr----~Grr~~l~~~~~~~  174 (449)
                      .+...++..++.....+.+...+|.+.++ .|.+..+.+.+.+.+.++.+++.+++|+++||    ..+|......+.++
T Consensus       274 ~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~  353 (495)
T KOG2533|consen  274 GVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLY  353 (495)
T ss_pred             hHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            34556666666777777777788887777 56899999999999999999999999999999    67777766666665


Q ss_pred             HHHH-HHhhhccchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchh-hHHHHHHHHhhhhhhHhHH-HHHHHHHhh
Q 013144          175 SLAT-FLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTER-ARAVAIAMGGFTSGNAIGL-VLSPILMSQ  251 (449)
Q Consensus       175 ~i~~-~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r-g~~~~~~~~~~~~G~~~g~-~l~~~l~~~  251 (449)
                      .+.. +.....  .+......+-+..+.+.+...+......++...++.| -...+....+.+.+.++++ ..-+.....
T Consensus       354 ~~~g~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~  431 (495)
T KOG2533|consen  354 AIIGAISLLAA--AVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDAPR  431 (495)
T ss_pred             HHHHHHHHHhh--ccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcccccCcc
Confidence            5554 433333  3344444444444455556667777777777755443 3334444444444444433 333444455


Q ss_pred             hCchHHHHHH
Q 013144          252 AGIFGPFVIF  261 (449)
Q Consensus       252 ~gwr~~f~~~  261 (449)
                      ++|-+.|+..
T Consensus       432 y~~~~~f~~~  441 (495)
T KOG2533|consen  432 YGWGAVFYML  441 (495)
T ss_pred             hhhhhHHHHH
Confidence            7888888543

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.14  E-value=3e-05  Score=70.46  Aligned_cols=123  Identities=20%  Similarity=0.203  Sum_probs=111.6

Q ss_pred             hhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcC--CchHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhh
Q 013144          126 SLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYG--GKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAE  203 (449)
Q Consensus       126 ~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~G--rr~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~g~  203 (449)
                      .+.+|.++.|.|-+.+...+...+.+....+..||..  -+..+..++.+..-..++.+.+  +....++++-.+-.+..
T Consensus       289 ~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~--~~~~~l~~~s~l~sf~~  366 (451)
T KOG2615|consen  289 HGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLA--RTPVVLYLGSTLKSFST  366 (451)
T ss_pred             cCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhcc--ccchhhhHHHHHHHHHH
Confidence            3779999999999999999999999999999999998  7778888887777777777788  88889999999999999


Q ss_pred             hhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHh
Q 013144          204 GVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS  250 (449)
Q Consensus       204 g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~  250 (449)
                      +...+....++....|+++||..+|+..+...++-++||+++|.+..
T Consensus       367 A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~  413 (451)
T KOG2615|consen  367 ASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFS  413 (451)
T ss_pred             HHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEE
Confidence            99999999999999999999999999999999999999999988754

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=98.13  E-value=0.00025  Score=70.80  Aligned_cols=160  Identities=15%  Similarity=0.105  Sum_probs=110.9

Q ss_pred             hhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhccchhH-HHHHHHHHHH
Q 013144          121 AIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSL-LALLAMRAVV  199 (449)
Q Consensus       121 ~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~-~~l~~~r~l~  199 (449)
                      .++.....+|.+......+...   .........+...|++|||..+..+..+..++.++.++...... +...+...+.
T Consensus       340 gl~~~~~~lg~~~~~~~~~~~~---~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (521)
T KOG0255|consen  340 GLSLNVSGLGGNIYLNFTLSGL---VELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLG  416 (521)
T ss_pred             hhhhhhhhcCchHHHHHHHHHH---HHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHH
Confidence            3444445566544333333332   44444445589999999999999999999999999888732222 2455556666


Q ss_pred             hhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHhcCCC
Q 013144          200 GLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSST  279 (449)
Q Consensus       200 G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~  279 (449)
                      .++.+..+.....+.+|.+|...|..+.+..+....+|.+++|.+...... ......+.+.+..+.+..++..++.||+
T Consensus       417 ~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~lpet  495 (521)
T KOG0255|consen  417 KFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQ-MFPLLGLILFGWLALLLGLLSLLLLPET  495 (521)
T ss_pred             HHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcccchHHHHHHHHHHHHHHHHhcCccc
Confidence            666666777779999999999999999999999999999999998766544 2222233334555566666665677777


Q ss_pred             CCCCC
Q 013144          280 PDRHP  284 (449)
Q Consensus       280 ~~~~~  284 (449)
                      .....
T Consensus       496 ~~~~l  500 (521)
T KOG0255|consen  496 KGKPL  500 (521)
T ss_pred             CCCCC
Confidence            65544

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=98.12  E-value=0.00017  Score=70.26  Aligned_cols=134  Identities=16%  Similarity=0.067  Sum_probs=98.9

Q ss_pred             hhHHHHHHHHHHHHHhhccchhhhhhcCC--ch-----HHHHHHHHHHHHHHHhhhc----c---chhHHHHHHHHHHHh
Q 013144          135 FSGIVQSSFLWGYLVSPIAGGTLVDYYGG--KI-----IMAWGVALWSLATFLTPWA----A---DTSLLALLAMRAVVG  200 (449)
Q Consensus       135 ~~g~~~s~~~~~~~~~~~~~G~l~dr~Gr--r~-----~l~~~~~~~~i~~~~~~~~----~---~~~~~~l~~~r~l~G  200 (449)
                      ..+|..++..+...+.+|+.+++=.|.+|  |.     =+.+|+++.+++.+...++    .   ..+.+++++..++++
T Consensus       309 p~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t  388 (493)
T PRK15462        309 PTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMG  388 (493)
T ss_pred             CHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHH
Confidence            46788899999888888888888677633  21     2778888888887666432    1   136788999999999


Q ss_pred             hhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhh-hhhhHhHHHHHHHHHhh------------hCchHHHHHHHHHHHH
Q 013144          201 LAEGVALPAMNNMVARWFPQTERARAVAIAMGGF-TSGNAIGLVLSPILMSQ------------AGIFGPFVIFGLSGFL  267 (449)
Q Consensus       201 ~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~-~~G~~~g~~l~~~l~~~------------~gwr~~f~~~~~~~~~  267 (449)
                      +|.-...|...+.+++..|++.||+.+|.+.... .+|..++..+++.....            ..+...|...+..+++
T Consensus       389 ~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~  468 (493)
T PRK15462        389 FAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTSQASFDASGAINYSINAYIEVFDQITWGALA  468 (493)
T ss_pred             HHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccccccchhhhHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999996643 57777766666555210            1244566666665554


Q ss_pred             H
Q 013144          268 W  268 (449)
Q Consensus       268 ~  268 (449)
                      .
T Consensus       469 ~  469 (493)
T PRK15462        469 C  469 (493)
T ss_pred             H
Confidence            4

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.02  E-value=4.7e-05  Score=53.49  Aligned_cols=62  Identities=16%  Similarity=0.178  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 013144          328 SIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR  390 (449)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~  390 (449)
                      .+-..+++.+.+...+..++|.|+++ .|+++.++|.+.++..+..+++.++.|+++||.+++
T Consensus         4 ~lk~~yf~~f~~~g~~~Pfl~~~~~~-~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~   65 (77)
T PF12832_consen    4 PLKAFYFFYFAALGCLYPFLPLYLKQ-LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKR   65 (77)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHhhhh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcc
Confidence            44556777788888889999999998 599999999999999999999999999999999988

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=97.94  E-value=0.00012  Score=70.65  Aligned_cols=126  Identities=20%  Similarity=0.230  Sum_probs=112.3

Q ss_pred             hhhhhhhcCCCchhhHHHHHHHHHHHHHhhccch-hhhhhcCCchHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHh
Q 013144          122 IVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGG-TLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVG  200 (449)
Q Consensus       122 ~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G-~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G  200 (449)
                      .-.+...++.++.+.+...+...+...+++++.. .+...+|-|++..+|++...+...+.+++  ++.|+++...++.+
T Consensus       265 ~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~--~~~w~~~~~~v~~~  342 (463)
T KOG2816|consen  265 LLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFA--TETWMMFAAGVVVA  342 (463)
T ss_pred             EEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHh--ccchhhhHHHHHHH
Confidence            4556678999999999888888888888888776 78888999999999999999999999999  99999999998888


Q ss_pred             hhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHh
Q 013144          201 LAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS  250 (449)
Q Consensus       201 ~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~  250 (449)
                      +. +...|...+.++.+..++++|+++++.+....+...++|.+-+.+..
T Consensus       343 ~~-~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~  391 (463)
T KOG2816|consen  343 LA-GIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFA  391 (463)
T ss_pred             hh-cchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHH
Confidence            86 55689999999999999999999999999999999999998877754

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=97.92  E-value=5.1e-05  Score=72.05  Aligned_cols=111  Identities=20%  Similarity=0.234  Sum_probs=90.8

Q ss_pred             hHHHHHHHHHHHHHHHhhhccch-------hHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcc---hhhHHHHHHHHhh
Q 013144          165 IIMAWGVALWSLATFLTPWAADT-------SLLALLAMRAVVGLAEGVALPAMNNMVARWFPQT---ERARAVAIAMGGF  234 (449)
Q Consensus       165 ~~l~~~~~~~~i~~~~~~~~~~~-------~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~---~rg~~~~~~~~~~  234 (449)
                      |+++++.+++.+|.++..++..+       +.+.++++-.+.++|.|+.-|...++++|-++++   +|...+.++..+.
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            57888999999998885444111       2467899999999999999999999999999765   5788899999999


Q ss_pred             hhhhHhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHh
Q 013144          235 TSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSA  275 (449)
Q Consensus       235 ~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~  275 (449)
                      ++|..++..+.+++-++.||.+.|.+.++..++..+..+..
T Consensus        82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~  122 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSG  122 (372)
T ss_dssp             HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCC
T ss_pred             hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999888877766655544

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=97.85  E-value=8e-05  Score=70.80  Aligned_cols=84  Identities=17%  Similarity=0.128  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHH-HHHHHHHHH
Q 013144          101 VSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWG-VALWSLATF  179 (449)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~-~~~~~i~~~  179 (449)
                      +..+=+.++..+.....+.|.++.+-+++|+++.+.|.+++.-.+..+++.|++|.++|||-+||.++++ .+......+
T Consensus        13 l~~~k~f~~~~~~~~g~l~pll~vy~kQLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a~f   92 (618)
T KOG3762|consen   13 LIVAKLFYLFFGARFGSLFPLLAVYFKQLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTATF   92 (618)
T ss_pred             hheeeeeeeeeeecccccchHHHHHHHHcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence            3344445555666667788888899999999999999999999999999999999999999876655554 555555566


Q ss_pred             Hhhhc
Q 013144          180 LTPWA  184 (449)
Q Consensus       180 ~~~~~  184 (449)
                      +..+.
T Consensus        93 ll~fv   97 (618)
T KOG3762|consen   93 LLVFV   97 (618)
T ss_pred             heeec
Confidence            65555

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=97.83  E-value=0.0015  Score=61.39  Aligned_cols=142  Identities=11%  Similarity=-0.031  Sum_probs=93.2

Q ss_pred             HHHHHHHHHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHH---H
Q 013144          103 MLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLAT---F  179 (449)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~---~  179 (449)
                      -+.+.++..+.....+.+.+.. ..++.-...+..+....|.+|..++.--...+  |+-+-+++.+-.++..+..   .
T Consensus       251 PL~lVY~aEY~InqGv~~tl~f-p~~~~~~r~~Y~~Y~~~YQ~GVFISRSS~~~~--rir~lwils~LQ~~nl~~~~l~s  327 (402)
T PF02487_consen  251 PLFLVYFAEYFINQGVAPTLLF-PNSFFSPRDQYRWYQLLYQLGVFISRSSLPFF--RIRRLWILSLLQVINLVFLLLQS  327 (402)
T ss_pred             HHHHHHHHHHHHHhchHHHhcC-CccCCCHHHHHHHHHHHHHHHHhhhhcceeee--ehhhHHHHHHHHHHHHHHHHHHH
Confidence            3445555555443333322211 12233345677888888888877775433222  3322232222222222222   2


Q ss_pred             HhhhccchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHH
Q 013144          180 LTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILM  249 (449)
Q Consensus       180 ~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~  249 (449)
                      +.-+.  ++.|.+++.-+..|+..|..++.....+.|-.|+++|..++|..+.+-++|..++..++-.+-
T Consensus       328 ~~~fi--psi~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le  395 (402)
T PF02487_consen  328 WYRFI--PSIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE  395 (402)
T ss_pred             HHHHh--hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            23344  789999999999999999999999999999999999999999999999999999988876653

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=97.77  E-value=0.0024  Score=60.67  Aligned_cols=284  Identities=11%  Similarity=0.012  Sum_probs=142.2

Q ss_pred             HHHHHHHHHHHHhHhhhhhhhhhhhhh--cCCCchhhHHHHH---HHHHHHHHhhccchhhhhhcCCchHHHH------H
Q 013144          102 SMLALALALCNADRVVMSVAIVPLSLA--HGWSRSFSGIVQS---SFLWGYLVSPIAGGTLVDYYGGKIIMAW------G  170 (449)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~g~~~s---~~~~~~~~~~~~~G~l~dr~Grr~~l~~------~  170 (449)
                      .++.+.+++.+...+.....+|.+.++  -+++.+|.|...-   -|.+=..=++++=.....|+||||..++      |
T Consensus         3 ~lL~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~~~fSla~~PfSlKlLWaPiVDs~y~~~~GRRKSWiiP~Q~l~g   82 (544)
T PF13000_consen    3 ALLVLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQAIFSLASYPFSLKLLWAPIVDSVYSKRIGRRKSWIIPIQYLSG   82 (544)
T ss_pred             eHHHHHHHHcCcccccccccchhhhccccCCCChhHheeeeeeechhHHHHhhhhhhhhhcccccCCcchhhhHHHHHHH
Confidence            345666777776666655667887777  5777777765432   1222222222222344448999985443      3


Q ss_pred             HHHHHHHHHH----------hhhcc--c---h--hHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHh
Q 013144          171 VALWSLATFL----------TPWAA--D---T--SLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGG  233 (449)
Q Consensus       171 ~~~~~i~~~~----------~~~~~--~---~--~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~  233 (449)
                      ..+..++.-.          -....  .   +  +...+....++.=+-.+.-..+.-.+.-.+..+++++.+..-...+
T Consensus        83 ~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqtvG  162 (544)
T PF13000_consen   83 ILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTCQTVG  162 (544)
T ss_pred             HHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHHHHhH
Confidence            3222222222          00000  0   0  1112223332333333444444555555566778887777766666


Q ss_pred             hhhhhHhHHHHHHHHHhh-h---Cch------------HHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHh
Q 013144          234 FTSGNAIGLVLSPILMSQ-A---GIF------------GPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILRE  297 (449)
Q Consensus       234 ~~~G~~~g~~l~~~l~~~-~---gwr------------~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (449)
                      .+.|..++..+--.+.+. +   =+|            .-..+.+.+.++..+...++.+|.|......+.+..+.....
T Consensus       163 ~~~Gyfls~tvFlalns~~f~Nky~r~~p~~~glvtl~~yl~fwg~~~l~~T~~v~~~k~E~~~~~~~~~~~~~~~~~~~  242 (544)
T PF13000_consen  163 QTAGYFLSFTVFLALNSPDFCNKYLRSTPSDEGLVTLSGYLKFWGWVFLIVTILVAFFKKEKPHSESLPKIEPINKSDGK  242 (544)
T ss_pred             hhhhHHHHHHHHHhhCCHHHHHHhcccCCCCCCeeeHHHHHHHHHHHHHHHHHHHheEeecccccccCcccccccccccc
Confidence            666666665554433221 0   011            112334444445555555666665532211110100000000


Q ss_pred             ccC---ccccCC---CCCCCCCc---hhHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccchhhHhhH
Q 013144          298 KQK---PLLMGN---KHKPATVI---PPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAV  368 (449)
Q Consensus       298 ~~~---~~~~~~---~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~  368 (449)
                      .+.   +....+   .++....+   ..+.+++|-|.+..+.+..+..-.++.........-+.+ .|++.++.+....+
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~i~~~Y~~l~~ilkLp~V~~li~ilL~~KigF~a~da~T~LKLlE-kG~~KE~LAl~~li  321 (544)
T PF13000_consen  243 SKEISIEYDESDVISTEEILSIKDVYKSLWKILKLPNVQTLIIILLTAKIGFQANDAVTSLKLLE-KGLSKEDLALLVLI  321 (544)
T ss_pred             ccccceecccccccchhhhhhHHHHHHHHHHHHcCchHHHHHHHHHHHHhccccchhhhHHHHHH-cCCCHHHhHHHHHH
Confidence            000   000000   00111112   233456677888888888888777777777777777778 59999887766544


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Q 013144          369 PWSVMAFTGYLGGLLSDMLIQR  390 (449)
Q Consensus       369 ~~~~~~~~~~~~g~l~dr~g~~  390 (449)
                          .+...++.|+++.|+-+.
T Consensus       322 ----~~P~qii~~~~~~Kws~g  339 (544)
T PF13000_consen  322 ----DFPFQIILPYYIGKWSAG  339 (544)
T ss_pred             ----hhhHHHHHHHHhhhhhcC
Confidence                566667777777776543

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=97.66  E-value=0.00081  Score=66.72  Aligned_cols=179  Identities=16%  Similarity=0.082  Sum_probs=135.0

Q ss_pred             HHHHHHHHHHHHHHHHHhH-hhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhc-CCchHHHHHHHHH
Q 013144           97 RVKVVSMLALALALCNADR-VVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYY-GGKIIMAWGVALW  174 (449)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~  174 (449)
                      .|.....+.......-+.. +.....+..+.+++|.....+.-..+.+........+..+.++|-| ||-+++.++.++.
T Consensus        35 ~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~  114 (571)
T KOG1237|consen   35 GWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLIS  114 (571)
T ss_pred             hhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            4444444433333333332 3346777888889998888888899999999999999999999975 8999999999999


Q ss_pred             HHHHHHhhhc-------c-----------ch-----hHHHHHHHHHHHhhhhhhhhhHHHHHHhhccC---cc---hhhH
Q 013144          175 SLATFLTPWA-------A-----------DT-----SLLALLAMRAVVGLAEGVALPAMNNMVARWFP---QT---ERAR  225 (449)
Q Consensus       175 ~i~~~~~~~~-------~-----------~~-----~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~---~~---~rg~  225 (449)
                      .+|.++..+.       +           ++     ....++.+.-+..+|.|+.-+...++-+|-++   ++   .+..
T Consensus       115 ~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~  194 (571)
T KOG1237|consen  115 LLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPS  194 (571)
T ss_pred             HHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCccc
Confidence            9987654333       0           00     13356777778888999999999999999997   32   2347


Q ss_pred             HHHHHHHhhhhhhHhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHh
Q 013144          226 AVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSA  275 (449)
Q Consensus       226 ~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~  275 (449)
                      .+.++....++|..++..+..++=++.||.+.|.+..+..++.+++++..
T Consensus       195 fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g  244 (571)
T KOG1237|consen  195 FFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPG  244 (571)
T ss_pred             chhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcC
Confidence            88899999999999999988888778899999999887776665554443

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=97.62  E-value=0.0025  Score=60.62  Aligned_cols=142  Identities=16%  Similarity=0.080  Sum_probs=108.7

Q ss_pred             hhhHHHHHHHHHHHHHhhccchhhhhhcCCc-------hHHHHHHHHHHHHHHHhhhc--------cchhHHHHHHHHHH
Q 013144          134 SFSGIVQSSFLWGYLVSPIAGGTLVDYYGGK-------IIMAWGVALWSLATFLTPWA--------ADTSLLALLAMRAV  198 (449)
Q Consensus       134 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr-------~~l~~~~~~~~i~~~~~~~~--------~~~~~~~l~~~r~l  198 (449)
                      -..+|..+...+..++.+++..++-.+.++|       .-+-+++.+.+.+.++....        ...+.++++...++
T Consensus       324 vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l  403 (498)
T COG3104         324 VPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVL  403 (498)
T ss_pred             cCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHH
Confidence            4568899999999999999988888885554       23455556666555544332        12479999999999


Q ss_pred             HhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHH------HHhhhCchHHHHHHHHHHHHHHHHH
Q 013144          199 VGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPI------LMSQAGIFGPFVIFGLSGFLWVLVW  272 (449)
Q Consensus       199 ~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~------l~~~~gwr~~f~~~~~~~~~~~~~~  272 (449)
                      +++|.=+..|++.+++....|++-.+.+++.+......|..++..+++.      ..+...-...|+..+..+++..+..
T Consensus       404 ~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~  483 (498)
T COG3104         404 QSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGILL  483 (498)
T ss_pred             HHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999998888887773      3344456667777777776666554


Q ss_pred             HHh
Q 013144          273 LSA  275 (449)
Q Consensus       273 ~~~  275 (449)
                      +..
T Consensus       484 ~~~  486 (498)
T COG3104         484 LLL  486 (498)
T ss_pred             HHh
Confidence            444

>PRK03612 spermidine synthase; Provisional

Probab=97.58  E-value=0.0054  Score=60.56  Aligned_cols=141  Identities=19%  Similarity=0.205  Sum_probs=86.7

Q ss_pred             hhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHH---HHHHHhhhc-c-chh-HHHHHHHHHHHh
Q 013144          127 LAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWS---LATFLTPWA-A-DTS-LLALLAMRAVVG  200 (449)
Q Consensus       127 ~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~---i~~~~~~~~-~-~~~-~~~l~~~r~l~G  200 (449)
                      .-+|-+..+.+.+.+++.+|.++|+.+.+++.++.-++.. .+-+.+..   ++..+.... . ... ...++..-++.|
T Consensus        43 ~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~-~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~  121 (521)
T PRK03612         43 YLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFV-AVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIG  121 (521)
T ss_pred             HHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3468888899999999999999999999887643222221 11111111   111111111 0 011 122344456778


Q ss_pred             hhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHH-hhhCchHHHHHHHHHHHHHH
Q 013144          201 LAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILM-SQAGIFGPFVIFGLSGFLWV  269 (449)
Q Consensus       201 ~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~-~~~gwr~~f~~~~~~~~~~~  269 (449)
                      +..|+..|....+..+.. .++-+...|-......+|.++|.++.+++. ..+|-....++.+.+.++..
T Consensus       122 ~l~G~~~Pl~~~~~~~~~-~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a  190 (521)
T PRK03612        122 LLIGMEIPLLMRILQRIR-DQHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAA  190 (521)
T ss_pred             HHHHHHHHHHHHHHHhcc-ccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            888888888777776543 234567788899999999999999988865 46775544444444444333

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=97.48  E-value=0.03  Score=50.34  Aligned_cols=68  Identities=18%  Similarity=0.185  Sum_probs=52.2

Q ss_pred             HHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhcc
Q 013144          148 LVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWF  218 (449)
Q Consensus       148 ~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~  218 (449)
                      +..+++.+.+..++|-|+++.++...+...-..- +-  +.+..++-.-...|+|.+..+..--+|+++..
T Consensus        72 ~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA~N-l~--pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g  139 (390)
T KOG3097|consen   72 IDSSMFMPLLIRFLGTKWTMVLAVFPYALYIAAN-LE--PRYETLVPAGLVLGMAAGPIWASKGTYLTPMG  139 (390)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhh-cc--hhHHhhccHHHhhccccccccccCcceecHHH
Confidence            3444444589999999999999998887654433 22  78999999999999999988877667766655

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.30  E-value=0.00033  Score=65.43  Aligned_cols=178  Identities=12%  Similarity=0.074  Sum_probs=110.2

Q ss_pred             HHHHHHHHHHHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCC-chHHHHHHHHHHHHHH
Q 013144          101 VSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGG-KIIMAWGVALWSLATF  179 (449)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Gr-r~~l~~~~~~~~i~~~  179 (449)
                      +.++.+.+.......+.....+......-|.+....|++.....++.++++.+.|.+.||... |.++++......++..
T Consensus       268 F~il~~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~  347 (480)
T KOG2563|consen  268 FIILAICYGIGLGLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTL  347 (480)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            333444444444444455555554445556677889999999999999999999999999874 4555555555555532


Q ss_pred             H-hhhc-cchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhC----
Q 013144          180 L-TPWA-ADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG----  253 (449)
Q Consensus       180 ~-~~~~-~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~g----  253 (449)
                      . .-+. .....+.++....+.|++.....|...-+-.|..-|..-+.-.|+.....++=.++-..+-+.+.+..+    
T Consensus       348 ~l~~~t~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~  427 (480)
T KOG2563|consen  348 MLLTCTLFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGN  427 (480)
T ss_pred             HHHHhhccCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCC
Confidence            2 1111 012345566677788888888899888888887654544566666665555555555555566655555    


Q ss_pred             chHHHHHHHHHHHHHHHHHHHhcCC
Q 013144          254 IFGPFVIFGLSGFLWVLVWLSATSS  278 (449)
Q Consensus       254 wr~~f~~~~~~~~~~~~~~~~~~~~  278 (449)
                      |...-+.....+++.+++..+..|+
T Consensus       428 ~~~~~i~~~~~~~l~~~lva~~r~~  452 (480)
T KOG2563|consen  428 TFPANIFLTVSALLGAILVAFFRPD  452 (480)
T ss_pred             CccchhHhHHHHHHHHHHHhhhhhh
Confidence            3333344444445555555555443

>TIGR00806 rfc RFC reduced folate carrier

Probab=97.04  E-value=0.0054  Score=58.74  Aligned_cols=70  Identities=14%  Similarity=-0.053  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHhhCCcccc-hhhHhhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHhHHHHHHHHHhhcccch
Q 013144          344 LSWMPIYFNFVYHIDLRQ-ASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSP  422 (449)
Q Consensus       344 ~~~~~~~~~~~~g~s~~~-~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (449)
                      ..+...++.+.+|++..+ .|.+...+..+..+..+.+|+++||+|.|         .++..+.+.-++..++..+..+.
T Consensus        45 ~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K---------~vL~l~~l~Wsl~t~L~~fa~Sl  115 (511)
T TIGR00806        45 ESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYK---------PVLVLQALSFVCVWLLLLLGTSV  115 (511)
T ss_pred             HHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCch---------HHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445666678999999 99999999999999999999999999988         45566666666666666555443

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.04  E-value=0.0037  Score=60.51  Aligned_cols=145  Identities=14%  Similarity=0.101  Sum_probs=109.6

Q ss_pred             CCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhc--------cchhHHHHHHHHHHHhhh
Q 013144          131 WSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWA--------ADTSLLALLAMRAVVGLA  202 (449)
Q Consensus       131 ~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~--------~~~~~~~l~~~r~l~G~g  202 (449)
                      .++...|.+..+..++..++..+.....-+..-|+++..+.++..+..+.-...        +.++.+..+.--++..+.
T Consensus       252 fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~  331 (433)
T PF03092_consen  252 FSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVI  331 (433)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHH
Confidence            888999999999999999999999888888898999988888877766542211        012334444455777777


Q ss_pred             hhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCc--------hHHHHHHHHHHHHHHHHHHH
Q 013144          203 EGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGI--------FGPFVIFGLSGFLWVLVWLS  274 (449)
Q Consensus       203 ~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gw--------r~~f~~~~~~~~~~~~~~~~  274 (449)
                      .+..+-....+++|..|+..-|...++..+..++|..++..++..+.+.++.        .+..++..+..++.+.+..+
T Consensus       332 ~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~ll~l  411 (433)
T PF03092_consen  332 GMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPLLFL  411 (433)
T ss_pred             HHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHHH
Confidence            7777888899999999999999999999999999999999999999887762        23334444445444444434


Q ss_pred             h
Q 013144          275 A  275 (449)
Q Consensus       275 ~  275 (449)
                      +
T Consensus       412 L  412 (433)
T PF03092_consen  412 L  412 (433)
T ss_pred             c
Confidence            4

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=97.03  E-value=0.008  Score=52.31  Aligned_cols=101  Identities=17%  Similarity=0.207  Sum_probs=59.1

Q ss_pred             chhhHHHHHHHHhhhhhhHhHHHHHHHH---Hh--hhCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHH
Q 013144          221 TERARAVAIAMGGFTSGNAIGLVLSPIL---MS--QAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYIL  295 (449)
Q Consensus       221 ~~rg~~~~~~~~~~~~G~~~g~~l~~~l---~~--~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (449)
                      |+|+....+...+.++|.++.-+.--.-   .+  .-.|++++.+.+++.++.+++..++-.+-....+. ++++     
T Consensus         2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~ifGk~fd~~~~~-~k~~-----   75 (267)
T PF07672_consen    2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIFGKNFDIYSPK-EKQE-----   75 (267)
T ss_pred             CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcc-cccc-----
Confidence            5666666777777788877654432111   11  23599999999888877777666664332221111 0110     


Q ss_pred             HhccCccccCCCCCCCCCchhHHHhhccccHHHHHHHHHHHH
Q 013144          296 REKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHS  337 (449)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (449)
                                .++.+........+.+|++..|...+.+....
T Consensus        76 ----------k~~~~~~~~~s~~~~LK~K~tw~w~~~Yg~wL  107 (267)
T PF07672_consen   76 ----------KENSTLSKKPSYKSILKEKETWKWILIYGIWL  107 (267)
T ss_pred             ----------cccccccccchHHHHHccchHHHHHHHHHHHh
Confidence                      01111222357789999999998887766543

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=97.01  E-value=0.0091  Score=57.10  Aligned_cols=144  Identities=17%  Similarity=0.074  Sum_probs=102.8

Q ss_pred             HHHHHHHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhc
Q 013144          105 ALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWA  184 (449)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~  184 (449)
                      .++..+-++..-.++..+......-|+++..+|..-+...+....+.+...++.+|+|..+.=+++.....+...++..+
T Consensus       264 s~alalLY~TVLsf~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~  343 (432)
T PF06963_consen  264 SFALALLYFTVLSFGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVS  343 (432)
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHH
Confidence            33333333333334455555555559999999999999999999999999999999999887777766544443333221


Q ss_pred             ---cc-----hhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHH
Q 013144          185 ---AD-----TSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPIL  248 (449)
Q Consensus       185 ---~~-----~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l  248 (449)
                         +.     .+...++.+-.+.=+|.=+......-++.|..|+++||...|.-.+..++--.+-..++-.+
T Consensus       344 ~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~  415 (432)
T PF06963_consen  344 FWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIF  415 (432)
T ss_pred             HhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence               11     24555555555666665566788889999999999999999999998888877776665433

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.85  E-value=0.078  Score=50.93  Aligned_cols=143  Identities=13%  Similarity=0.135  Sum_probs=96.6

Q ss_pred             HHHHHHHHHhHhhhhhhhhhh---hhhcCCCchh-hHHHHHHHHHHHHHhhccchhhhh---hcCCchHHHHHHHHHHHH
Q 013144          105 ALALALCNADRVVMSVAIVPL---SLAHGWSRSF-SGIVQSSFLWGYLVSPIAGGTLVD---YYGGKIIMAWGVALWSLA  177 (449)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~-~g~~~s~~~~~~~~~~~~~G~l~d---r~Grr~~l~~~~~~~~i~  177 (449)
                      ....+..+.....+....|.-   ....+.+... .+.-.-...++..++..+.+.+.+   ++||++.+.++.++..++
T Consensus       246 ~~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~  325 (461)
T KOG3098|consen  246 FPFFFYTGLETSFWISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIG  325 (461)
T ss_pred             HHHHHHHHHHHHHHHhccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHH
Confidence            333344444444444444442   2223333322 233333444555555566666664   589999999999999998


Q ss_pred             HHHhhhcc----------------chhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhH
Q 013144          178 TFLTPWAA----------------DTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIG  241 (449)
Q Consensus       178 ~~~~~~~~----------------~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g  241 (449)
                      .++.-...                .+++...++.-++.|++.+......+.++++.. +++|..+.++.-.-..++..++
T Consensus       326 ~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~  404 (461)
T KOG3098|consen  326 FLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVA  404 (461)
T ss_pred             HHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHH
Confidence            88765441                135777888899999999999999999999999 6889999999988888888776


Q ss_pred             HHHHHHH
Q 013144          242 LVLSPIL  248 (449)
Q Consensus       242 ~~l~~~l  248 (449)
                      -......
T Consensus       405 ~f~~~~~  411 (461)
T KOG3098|consen  405 FFFSPYL  411 (461)
T ss_pred             hhhhhhh
Confidence            6655443

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=96.83  E-value=0.01  Score=42.16  Aligned_cols=77  Identities=17%  Similarity=0.205  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHhHHHHHHHHHh
Q 013144          337 SWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGL  416 (449)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (449)
                      ..+-+.+...+|...++ .++|..+++++.+...++.++|.+...++.++..++         .++..+++...+.++.+
T Consensus         5 GigRFayTplLP~M~~~-~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~---------~~~~~~l~~~~~~~~~m   74 (85)
T PF06779_consen    5 GIGRFAYTPLLPLMQAD-GGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPR---------RLLRAGLLLTVLSTAAM   74 (85)
T ss_pred             hhHHHHHHhHhHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHH---------HHHHHHHHHHHHHHHHH
Confidence            44566777788888877 599999999999999999999999999988875544         45567777777777777


Q ss_pred             hcccchh
Q 013144          417 TAAKSPV  423 (449)
Q Consensus       417 ~~~~~~~  423 (449)
                      ...++.+
T Consensus        75 a~~~~~~   81 (85)
T PF06779_consen   75 ALTHSFW   81 (85)
T ss_pred             HHHhchH
Confidence            7665554

Note that many members are hypothetical proteins.

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=96.66  E-value=0.13  Score=49.67  Aligned_cols=113  Identities=15%  Similarity=0.092  Sum_probs=77.2

Q ss_pred             hhHHHHHHHHHHHHHhhccchhhhhhcCCc--hHHHHHH--HHHHHHHHHhhhcc-------chhHHHHHHHHHHHhhhh
Q 013144          135 FSGIVQSSFLWGYLVSPIAGGTLVDYYGGK--IIMAWGV--ALWSLATFLTPWAA-------DTSLLALLAMRAVVGLAE  203 (449)
Q Consensus       135 ~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr--~~l~~~~--~~~~i~~~~~~~~~-------~~~~~~l~~~r~l~G~g~  203 (449)
                      ..-.....+.++-.+|..+..+.. .-++|  ++++.+.  +++.-..++|..-+       .++-+..++.-++.|+..
T Consensus       308 ~~~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltn  386 (437)
T TIGR00939       308 YPIICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSN  386 (437)
T ss_pred             HHHHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhh
Confidence            334566778888888887554331 11223  3332222  22333333443221       146666777799999999


Q ss_pred             hhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHH
Q 013144          204 GVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPIL  248 (449)
Q Consensus       204 g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l  248 (449)
                      |-....+..+..+..++++|..+..+...+..+|..+|..++-.+
T Consensus       387 Gy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~~  431 (437)
T TIGR00939       387 GYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFLF  431 (437)
T ss_pred             hHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998876544

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=96.55  E-value=0.011  Score=55.66  Aligned_cols=126  Identities=17%  Similarity=0.083  Sum_probs=76.4

Q ss_pred             CCCchhhHHHHHHHHHHHHHhhccchhhhhhc----CCchHHHHHHHHHHHHH------HHhhhccchhHHHHHHHHHHH
Q 013144          130 GWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYY----GGKIIMAWGVALWSLAT------FLTPWAADTSLLALLAMRAVV  199 (449)
Q Consensus       130 ~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~----Grr~~l~~~~~~~~i~~------~~~~~~~~~~~~~l~~~r~l~  199 (449)
                      |.+..+.-++..+...+..+|.+.+|.++||+    .+-....+.-+..+.+.      +.+......+...+.+.-++.
T Consensus       279 ~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~~~~~il~~~  358 (493)
T KOG1330|consen  279 GFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTSSSMIFGLILFLV  358 (493)
T ss_pred             CCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            44555666777888899999999999999993    22122222222222222      111111112333333344455


Q ss_pred             hhhhhh-hhhHHHHHHhhccCcchhhHHHHHHHHhhh-hhhHhHHHHHHHHHhh-hCch
Q 013144          200 GLAEGV-ALPAMNNMVARWFPQTERARAVAIAMGGFT-SGNAIGLVLSPILMSQ-AGIF  255 (449)
Q Consensus       200 G~g~g~-~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~-~G~~~g~~l~~~l~~~-~gwr  255 (449)
                      |.-... .+....-+..|..|+++|..+.++-..... +|.+-+|.+.|.+.++ .||+
T Consensus       359 g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l~g~~  417 (493)
T KOG1330|consen  359 GETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKLRGYK  417 (493)
T ss_pred             HHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHhhCCC
Confidence            554432 234455667888999999999999765554 5666677688898886 4676

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=96.29  E-value=0.0092  Score=57.36  Aligned_cols=84  Identities=13%  Similarity=0.199  Sum_probs=66.9

Q ss_pred             HHHHHHHH-HHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchHHHHHHHHHHHH
Q 013144          189 LLALLAMR-AVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFL  267 (449)
Q Consensus       189 ~~~l~~~r-~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~  267 (449)
                      .+.+++.. ++.|.+.-.......++-+|...+++++.+.++++.....+..+||++...+....|.|+...+.+...++
T Consensus       387 ~~~~l~~~i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~  466 (488)
T KOG2325|consen  387 LILYLISFIVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLV  466 (488)
T ss_pred             hhhheeehhheeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHH
Confidence            34445553 46777777777788899999999999999999999999999999999999999999999888776555444


Q ss_pred             HHHHH
Q 013144          268 WVLVW  272 (449)
Q Consensus       268 ~~~~~  272 (449)
                      ...++
T Consensus       467 ~~~l~  471 (488)
T KOG2325|consen  467 VAALW  471 (488)
T ss_pred             HHHHH
Confidence            44433

>TIGR00805 oat sodium-independent organic anion transporter

Probab=96.08  E-value=0.015  Score=59.31  Aligned_cols=69  Identities=7%  Similarity=-0.052  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHhHHHHHHHHHhhc
Q 013144          341 FVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTA  418 (449)
Q Consensus       341 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (449)
                      .++....-..+++.++++..+.|++.+.+.++.+++.++.+++.||.+||+         .+.++.++.+++.++++.
T Consensus        49 ~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~---------~i~~g~ll~~lg~ll~al  117 (633)
T TIGR00805        49 NGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPI---------VIGIGCAIMGLGSFLLSL  117 (633)
T ss_pred             HHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcce---------EEEecHHHHHHHHHHHhC
Confidence            333333333445568999999999999999999999999999999999883         334555555555554433

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=95.88  E-value=0.16  Score=47.71  Aligned_cols=120  Identities=13%  Similarity=-0.009  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHH----HhhccchhhhhhcCCchHHHHHHHHHHH
Q 013144          101 VSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYL----VSPIAGGTLVDYYGGKIIMAWGVALWSL  176 (449)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~----~~~~~~G~l~dr~Grr~~l~~~~~~~~i  176 (449)
                      ..+.++..+.....+..+..+.++..+++-.+.. .-.....+.+...    +....-..+.-|.-+| +.........+
T Consensus        20 ~~i~~llGiG~LlpWN~fiTa~~y~~~~~~~~~~-~~~F~~~~~~~a~i~~ll~~~~n~~~~~~~~~~-~~~~l~~~~il   97 (406)
T KOG1479|consen   20 YLIFLLLGIGTLLPWNMFITASDYYYYRFPGYHN-SKNFTSSYTLAAQIPLLLFNLLNAFLNTRLRTR-VGYLLSLIAIL   97 (406)
T ss_pred             HHHHHHHhcccccchHhhhccHHHHHhhcCCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            3344444445556677777778888777643333 3333333444333    4444444445552222 11111111111


Q ss_pred             HHHHhhhc-------cchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchh
Q 013144          177 ATFLTPWA-------ADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTER  223 (449)
Q Consensus       177 ~~~~~~~~-------~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~r  223 (449)
                      ..+.+.++       ....++..++.-.+.|++.|......+...++ +|++.-
T Consensus        98 ~i~~l~~~~v~~~~~~~~ff~vt~~~vv~~~~a~a~~qgs~~G~a~~-~P~~yt  150 (406)
T KOG1479|consen   98 FIVTLDLALVKTDTWTNGFFLVTLIIVVLLNLANAVVQGSLYGLAGL-FPSEYT  150 (406)
T ss_pred             HHHHHHHHhhccCCccchhHHHHHHHHHHHhhhhhhhccchhhhhhc-CCHHHH
Confidence            11222222       12356677777888899988888887777775 555554

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=95.76  E-value=0.21  Score=48.32  Aligned_cols=52  Identities=12%  Similarity=0.171  Sum_probs=36.8

Q ss_pred             hHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHH
Q 013144          188 SLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVL  244 (449)
Q Consensus       188 ~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l  244 (449)
                      .++..++.-++.|++.+.......++.+ .+|++    .++.+..+.+++++++.++
T Consensus       105 ~f~~~~~~v~~~g~~~~~~q~s~~gla~-~fp~~----~~~a~~~G~g~aGv~~s~~  156 (437)
T TIGR00939       105 FFVTTMASVVIINSGMALLQGSLFGLAG-VFPST----YSSAVMSGQGLAGVLTSLA  156 (437)
T ss_pred             HHHHHHHHHHHHHhhhhhhcccchhhcc-cCCHH----HHHHHHhcchhHHHHHHHH
Confidence            5777778888999999998888888777 56644    3455556666666665544

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=95.51  E-value=0.0036  Score=62.08  Aligned_cols=153  Identities=14%  Similarity=0.120  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHhHhhhhhhhh-hhhhhcCCCchhhHHHHHHHHH-HHHHhhccchhhhhhcC--CchHHHHHHHHH
Q 013144           99 KVVSMLALALALCNADRVVMSVAIV-PLSLAHGWSRSFSGIVQSSFLW-GYLVSPIAGGTLVDYYG--GKIIMAWGVALW  174 (449)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~g~~~s~~~~-~~~~~~~~~G~l~dr~G--rr~~l~~~~~~~  174 (449)
                      ..+....++.....+....+....| .+..+|++++++++++..+..+ +.++|.+++|++..|+.  .|+.+....+..
T Consensus       305 p~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~  384 (539)
T PF03137_consen  305 PVFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVS  384 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHH
Confidence            3445555555555555545555554 4566899999999999876666 66789999999999985  455554444444


Q ss_pred             HHHHHHh---hhc-------------c------------------------------------chhHHHHHHHHHHHhhh
Q 013144          175 SLATFLT---PWA-------------A------------------------------------DTSLLALLAMRAVVGLA  202 (449)
Q Consensus       175 ~i~~~~~---~~~-------------~------------------------------------~~~~~~l~~~r~l~G~g  202 (449)
                      .++.++.   .+.             .                                    ++.+..+++..++.-+.
T Consensus       385 ~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~  464 (539)
T PF03137_consen  385 IVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFF  464 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHH
Confidence            4443320   000             0                                    01234455555555555


Q ss_pred             hhhhhhHHHHHHhhccCcchhhHHHHHHHHhhh-hhhHhHHHHHHHHHhh
Q 013144          203 EGVALPAMNNMVARWFPQTERARAVAIAMGGFT-SGNAIGLVLSPILMSQ  251 (449)
Q Consensus       203 ~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~-~G~~~g~~l~~~l~~~  251 (449)
                      .+...+.....+-+..|+++|..++|+...... +|.+-||++-|.+.|.
T Consensus       465 ~~~~~~p~~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~  514 (539)
T PF03137_consen  465 TFMSQVPSTLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDS  514 (539)
T ss_dssp             --------------------------------------------------
T ss_pred             HHhcccchheeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence            555555666666688899999999999876554 6889999999998875

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=95.46  E-value=0.45  Score=43.91  Aligned_cols=37  Identities=19%  Similarity=0.208  Sum_probs=34.4

Q ss_pred             hhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 013144          354 VYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR  390 (449)
Q Consensus       354 ~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~  390 (449)
                      .+|++..+++.++........+...+.|.+.||+|||
T Consensus        63 ~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk   99 (354)
T PF05631_consen   63 SYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRK   99 (354)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence            4799999999999998888999999999999999998

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=95.21  E-value=0.58  Score=36.55  Aligned_cols=37  Identities=22%  Similarity=0.128  Sum_probs=27.4

Q ss_pred             HhhhhhhHhHHHHHHHHHhhhCchHHHHHHHHHHHHH
Q 013144          232 GGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLW  268 (449)
Q Consensus       232 ~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~  268 (449)
                      ....++..++.++.+.+.+..|.|..+........+.
T Consensus         5 ~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~   41 (141)
T TIGR00880         5 AGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLS   41 (141)
T ss_pred             EeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHH
Confidence            3456788888899999999999888877655444433

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=95.18  E-value=0.1  Score=46.60  Aligned_cols=140  Identities=16%  Similarity=0.156  Sum_probs=96.4

Q ss_pred             hHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhhhHHHHHHh
Q 013144          136 SGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVA  215 (449)
Q Consensus       136 ~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~  215 (449)
                      .|.+.-+-.+...+..+.+....||+.--.=..+..++.+.+.++.+++  ++.++-+.+-.+..++.|.-...-.++-+
T Consensus        64 tg~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs--~s~~~sL~GV~~aSissGlGEiTFL~lss  141 (409)
T KOG3880|consen   64 TGAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFS--NSVPMSLLGVVFASISSGLGEITFLALSS  141 (409)
T ss_pred             cchhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEec--cchhHHHhhhhhhhhcCCcceeehhhhhc
Confidence            3445555556666666777778888654444455667777888888898  99999899888988888876655555443


Q ss_pred             hccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhh--hCchHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 013144          216 RWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQ--AGIFGPFVIFGLSGFLWVLVWLSATSSTPDR  282 (449)
Q Consensus       216 ~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~--~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~  282 (449)
                      . +|    ...++-++.+.+.++++|..--..+.+.  +.-|.+.++...+.++.....++.+++++..
T Consensus       142 ~-Y~----~~~i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL~~pes~  205 (409)
T KOG3880|consen  142 R-YP----SIVIAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFLLKSPESV  205 (409)
T ss_pred             c-CC----CceeccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHheeCCCccc
Confidence            3 33    2446677777888888887766666663  4577888887777777777777776655443

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=93.74  E-value=0.66  Score=44.02  Aligned_cols=99  Identities=12%  Similarity=0.054  Sum_probs=73.7

Q ss_pred             CchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHH--HHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhhhH
Q 013144          132 SRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWG--VALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPA  209 (449)
Q Consensus       132 ~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~--~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~  209 (449)
                      +..--|.+-++..+..+++++..|++-.++.+..-+.++  .++.+...++++..  +|.|..+++.++.+...-...+.
T Consensus       283 ~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t--~~Iwv~Y~~yIif~~~y~fliTi  360 (412)
T PF01770_consen  283 ESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFT--GNIWVCYAGYIIFRSLYMFLITI  360 (412)
T ss_pred             CcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHH
Confidence            334458888899999999999999997777775544433  34444555566677  89999999999888888877888


Q ss_pred             HHHHHhhccCcchhhHHHHHHHH
Q 013144          210 MNNMVARWFPQTERARAVAIAMG  232 (449)
Q Consensus       210 ~~~~i~~~~~~~~rg~~~~~~~~  232 (449)
                      +..-++.....+.-|..+|+...
T Consensus       361 A~~qIA~~l~~e~yaLVFGiNtf  383 (412)
T PF01770_consen  361 ASFQIAKNLSEERYALVFGINTF  383 (412)
T ss_pred             HHHHHHHhccccceeeeeeeHHH
Confidence            88878877776777777766544

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=92.54  E-value=0.67  Score=40.94  Aligned_cols=67  Identities=19%  Similarity=0.127  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHhHHHHHHHHHh
Q 013144          339 GFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGL  416 (449)
Q Consensus       339 ~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (449)
                      ..|.+..|.|. +++.+|+|..+...+.....++..+ .++.|.+.|+.|.+         ..+.++.+...++...+
T Consensus        17 t~Y~Fs~yS~~-Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~---------~~l~iG~~~~~~GY~~~   83 (250)
T PF06813_consen   17 TTYTFSAYSPQ-LKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPW---------VVLLIGAVLGFVGYGLL   83 (250)
T ss_pred             cccchhhhhHH-HHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchH---------HHHHHHHHHHHHHHHHH
Confidence            44555566655 4556899999999988888888876 48889999999988         44455554444444433

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=92.41  E-value=2.3  Score=41.22  Aligned_cols=66  Identities=9%  Similarity=-0.009  Sum_probs=53.5

Q ss_pred             HHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchH
Q 013144          191 ALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFG  256 (449)
Q Consensus       191 ~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~  256 (449)
                      .+++.-++..+..-..+++..++-+.+.+|.-=|..|.+.++..++|+-.-..+.-.+++.+-++.
T Consensus       407 lvI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~fT~~~  472 (544)
T PF13000_consen  407 LVIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDYFTVAT  472 (544)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhhccccc
Confidence            344556778888888889999999999999999999999999999998877777666766655543

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=92.40  E-value=2.2  Score=43.61  Aligned_cols=152  Identities=14%  Similarity=0.129  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHHHHHhHhhhhhhhhh-hhhhcCCCchhhHHHHHHHH-HHHHHhhccchhhhhhcC--CchHHHHHHHHHH
Q 013144          100 VVSMLALALALCNADRVVMSVAIVP-LSLAHGWSRSFSGIVQSSFL-WGYLVSPIAGGTLVDYYG--GKIIMAWGVALWS  175 (449)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~g~~~s~~~-~~~~~~~~~~G~l~dr~G--rr~~l~~~~~~~~  175 (449)
                      ++.+..++..+......-+...+|- +.++|+.+.+.+..+.+... -+.++|.+++|++..|+-  .|.+..+.++...
T Consensus       393 if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~  472 (735)
T KOG3626|consen  393 IFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSV  472 (735)
T ss_pred             hHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHH
Confidence            3444555555555544444455554 56679999999999886544 455788889999999874  4444444444433


Q ss_pred             HHHHH---hhh---------------------------------------------------------------------
Q 013144          176 LATFL---TPW---------------------------------------------------------------------  183 (449)
Q Consensus       176 i~~~~---~~~---------------------------------------------------------------------  183 (449)
                      +..+.   ..+                                                                     
T Consensus       473 l~l~~~~~~~~igC~~~~~aG~~~~y~~~~~~~~~~~~~s~Cn~~C~C~~~~~~PVCg~~G~tY~SpChAGC~~~~~~~~  552 (735)
T KOG3626|consen  473 LSLLFYSLLFFIGCESSPVAGVTNSYEGSPAFTSHENPFSSCNSDCSCDTSEYEPVCGENGITYFSPCHAGCTESSGTSD  552 (735)
T ss_pred             HHHHHHHHHHEecCCCCcccceecCCCCCCccccCCCchhhhhcCCCCCCcCcCcccCCCCCEEeChhhhCCcccccCCC
Confidence            33332   100                                                                     


Q ss_pred             ----------cc------------------chhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhh
Q 013144          184 ----------AA------------------DTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFT  235 (449)
Q Consensus       184 ----------~~------------------~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~  235 (449)
                                .+                  +..+..+++.-++.-+..+...+..+.++-+..++++|..++|+..+...
T Consensus       553 ~~~~ytnCsCv~~~~~~~~~a~~G~C~~~c~~~~~~Fl~~~~~~sf~~~~~~~p~~~i~LR~V~~e~ks~AlG~~~~~ir  632 (735)
T KOG3626|consen  553 GNTIYTNCSCVPTNKNGNGSAKKGYCPNDCCRQFLIFLALFAIGSFIGALGAVPGMLIVLRCVPPEEKSFALGFQWMLIR  632 (735)
T ss_pred             CceeeccccccccccCCCceeecCCCCCCcchhhHHHHHHHHHHHHHHHhccCcceEEEEEccCchhchhhhHHHHHHHH
Confidence                      00                  01123344444444444444456666677788899999999999876655


Q ss_pred             -hhhHhHHHHHHHHHhh
Q 013144          236 -SGNAIGLVLSPILMSQ  251 (449)
Q Consensus       236 -~G~~~g~~l~~~l~~~  251 (449)
                       +|.+-+|++-|+++|.
T Consensus       633 llg~IPsPIifG~~ID~  649 (735)
T KOG3626|consen  633 LLGFIPSPIIFGAVIDT  649 (735)
T ss_pred             HHhcCCchHhhhhhHhh
Confidence             7999999999999873

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=92.32  E-value=0.67  Score=47.35  Aligned_cols=100  Identities=10%  Similarity=0.056  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHH-HHhCCCchhhHHHHHHHHhHHHHHHHHHhh
Q 013144          339 GFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDML-IQRGTSVTLTRKILQSIGFIAPGIALIGLT  417 (449)
Q Consensus       339 ~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (449)
                      .+|++...+..|+.+.+|++...+..+...+....-+..+++|++.|++ |++         ..+..+.++..++..++.
T Consensus         2 syYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~---------~tIl~~~ii~~lG~~lla   72 (654)
T TIGR00926         2 SYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKF---------KTILYLSIVYVVGHALLS   72 (654)
T ss_pred             ceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH---------HHHHHHHHHHHHHHHHHH
Confidence            4566777888888888899988888888888777888889999999985 555         233333333344443333


Q ss_pred             cccch----hHHHHHHHHHHHhhhhccccccccc
Q 013144          418 AAKSP----VMASAWLTLAIGMKSFSHSGFLVNL  447 (449)
Q Consensus       418 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~  447 (449)
                      ....+    ........+++.+...+.+++-.+.
T Consensus        73 i~a~~~~~~~~~~~~~l~gLaLia~G~GgiKp~v  106 (654)
T TIGR00926        73 FGAIPSSGHPLHDLLDLLGLALIALGTGGIKPCV  106 (654)
T ss_pred             hccCcccccchHHHHHHHHHHHHHhhccccccCc
Confidence            32111    1112223455556666666655443

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=92.30  E-value=1.3  Score=39.88  Aligned_cols=140  Identities=16%  Similarity=0.011  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHHHhHhhhhhhhhh-hhhhcCCC-chhhHHHHHHHHHHHHHhhccchhhhhhcCC-ch-----HHHHHHHH
Q 013144          102 SMLALALALCNADRVVMSVAIVP-LSLAHGWS-RSFSGIVQSSFLWGYLVSPIAGGTLVDYYGG-KI-----IMAWGVAL  173 (449)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~-~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Gr-r~-----~l~~~~~~  173 (449)
                      +-++..++..++........+-. -.+.+..+ ++|.-|....|.+|..+..-     +-++=+ +.     .+-.-.++
T Consensus       254 vPL~~VY~~EY~INQGl~ell~F~c~~g~sls~~sqYRwyqvlYQlGVFiSRS-----S~~~~~~p~l~~LailQ~vNl~  328 (409)
T KOG3880|consen  254 VPLALVYFAEYFINQGLAELLLFPCSHGFSLSKDSQYRWYQVLYQLGVFISRS-----SINLFTMPYLWLLAILQFVNLL  328 (409)
T ss_pred             HHHHHHHHHHHHHhhhhHhhEEeccccCCccchhhcchhhheeeeeeEEEEec-----cceEEechHHHHHHHHHHHHHH
Confidence            33455555555443332222111 12333333 34678888888876544332     222211 11     12222333


Q ss_pred             HHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHH
Q 013144          174 WSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPIL  248 (449)
Q Consensus       174 ~~i~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l  248 (449)
                      +.+...+..+.  +++|..++.-+.-|+-.|..++...--+.+-.++++|-.+++.....-++|..++..++-.+
T Consensus       329 ff~~~a~~~ft--psi~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl  401 (409)
T KOG3880|consen  329 FFLLQAWYWFT--PSIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL  401 (409)
T ss_pred             HHHHHHHHHhc--cHHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence            44444556666  89999999999999998988888887777777889999999999999898888887766444

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=91.69  E-value=2.1  Score=40.47  Aligned_cols=112  Identities=16%  Similarity=0.065  Sum_probs=79.0

Q ss_pred             CchhhHHHHHH-HHHHHHHhhccchhhhhhcCCchHHHHHHH-HHHHHHHH-h------hhccchhHHHHHHHHHHHhhh
Q 013144          132 SRSFSGIVQSS-FLWGYLVSPIAGGTLVDYYGGKIIMAWGVA-LWSLATFL-T------PWAADTSLLALLAMRAVVGLA  202 (449)
Q Consensus       132 ~~~~~g~~~s~-~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~-~~~i~~~~-~------~~~~~~~~~~l~~~r~l~G~g  202 (449)
                      ++...-++... +.+.-.+|.+.+.++-+.= ||+..+..++ ...+-.+. |      .+-  .+-+++++.-.+.|+.
T Consensus       280 ~~~y~~~~~~l~fN~~d~vG~~~a~~~~~~~-~r~l~i~v~lR~lfiPlF~~cn~~~~~v~~--~~~~~~~~l~~~lgls  356 (406)
T KOG1479|consen  280 GDWYALLLVFLSFNVFDLIGSILAALLTWPD-PRKLTIPVLLRLLFIPLFLLCNYPPLPVVF--ESDGWFIFLMSLLGLS  356 (406)
T ss_pred             chhhHHHHHHHHhHHHHHhhhhhhhcccCCC-CceehHHHHHHHHHHHHHHHhccCCCCcee--cCchHHHHHHHHHHhc
Confidence            34445556666 8888888877776666653 4443333222 33333333 1      112  5777888889999999


Q ss_pred             hhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHH
Q 013144          203 EGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSP  246 (449)
Q Consensus       203 ~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~  246 (449)
                      .|-.......+..+-.|++++-.+-.+.......|...|..++.
T Consensus       357 nGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s~  400 (406)
T KOG1479|consen  357 NGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLSW  400 (406)
T ss_pred             cchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            99999999999999999999988888888888888888877654

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=91.61  E-value=0.064  Score=49.40  Aligned_cols=110  Identities=15%  Similarity=0.034  Sum_probs=3.8

Q ss_pred             HHHHHHHHHHHHhhccchhhhhh-cCCchHHHHHH--HHHHHHHHHhhhcc--------chhHHHHHHHHHHHhhhhhhh
Q 013144          138 IVQSSFLWGYLVSPIAGGTLVDY-YGGKIIMAWGV--ALWSLATFLTPWAA--------DTSLLALLAMRAVVGLAEGVA  206 (449)
Q Consensus       138 ~~~s~~~~~~~~~~~~~G~l~dr-~Grr~~l~~~~--~~~~i~~~~~~~~~--------~~~~~~l~~~r~l~G~g~g~~  206 (449)
                      .....+.++-.+|..+.++..=+ -.+|++...+.  +++.-..++|...+        .+|-+..++.-++.|+..|-.
T Consensus       186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl  265 (309)
T PF01733_consen  186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYL  265 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchh
Confidence            34567888888888877764211 12444443221  12222222231110        145566777889999999999


Q ss_pred             hhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHH
Q 013144          207 LPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPI  247 (449)
Q Consensus       207 ~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~  247 (449)
                      .+.+..+..+..++++|..+-.+...+..+|..+|..++-.
T Consensus       266 ~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls~~  306 (309)
T PF01733_consen  266 STLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLSFL  306 (309)
T ss_dssp             -HHHH------------------------------------
T ss_pred             hhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999888877543

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=90.10  E-value=0.032  Score=48.31  Aligned_cols=61  Identities=13%  Similarity=0.044  Sum_probs=41.9

Q ss_pred             HHHHHHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhh---------hhhcCCchH
Q 013144          106 LALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTL---------VDYYGGKII  166 (449)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l---------~dr~Grr~~  166 (449)
                      .+.+.+-....++-..+-.+.++.|+++.....+.-+..+.-++..++.|..         .||+|||+.
T Consensus        24 vGHmlNDitAScWFTYlllfltqiglsp~~~AmlML~GQVtda~st~ftGi~~d~nll~~~idr~G~~~~   93 (412)
T KOG4830|consen   24 VGHMLNDITASCWFTYLLLFLTQIGLSPSSRAMLMLIGQVTDAISTPFTGIFSDSNLLPACIDRIGRRMS   93 (412)
T ss_pred             hhHHHhhHHHHHHHHHHHHHHHHhcCCcchhHHHHHhhHHHHHHhcccccccccccccHHHhhhhcceee
Confidence            3444444444444444445556778888888888888888888888888644         569999874

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=89.95  E-value=0.3  Score=46.34  Aligned_cols=128  Identities=13%  Similarity=0.007  Sum_probs=91.6

Q ss_pred             HHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhhhHHHHHHhh
Q 013144          137 GIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVAR  216 (449)
Q Consensus       137 g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~  216 (449)
                      .|-..++.+...+.+....++.+|+|-|+.+..+...+.++..+.+..  ++.+....-+...|+-.+.....-...+++
T Consensus       335 ~~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~--~~~~~~~~~~~~~G~~~~~~~~~p~~l~~~  412 (498)
T KOG0637|consen  335 CLGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLV--LNTYVVLSHRSTAGILSSPLLTVPYGALAL  412 (498)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhh--hhHHHHHHHHhhcceeecchhcccHHHHHH
Confidence            466667888888999999999999998777777777788888888878  888888888888886666555555555544


Q ss_pred             ccCc-----------------------chhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhC-chHHHHHHHHHHH
Q 013144          217 WFPQ-----------------------TERARAVAIAMGGFTSGNAIGLVLSPILMSQAG-IFGPFVIFGLSGF  266 (449)
Q Consensus       217 ~~~~-----------------------~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~g-wr~~f~~~~~~~~  266 (449)
                      +.-.                       ..+|...|+.++...+.+++.....|.+.+..| =+.+-+..++.++
T Consensus       413 y~~~g~~~a~t~~~pf~~~s~~~~~sg~g~G~~~gvln~~I~ipQvivs~~~Gp~~~~~G~~~~~~~~~~a~s~  486 (498)
T KOG0637|consen  413 YAILGIPLAITFSIPFALASIEIGNSGLGQGLDLGVLNCAIVIPQVLVSLGLGPLDQLFGGGNLPAFVSGAVAL  486 (498)
T ss_pred             HHHhCCccccccccccccccccccCccCCCCceeeeeeeeeeehhheeeccccchhhhcCCcchhHHHHHHHHH
Confidence            3211                       224677778888888888888887787777665 3444344444433

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=89.59  E-value=25  Score=35.52  Aligned_cols=30  Identities=17%  Similarity=-0.051  Sum_probs=16.4

Q ss_pred             cccchhhHhhHHHHHHHHHHHHHHHHHHHH
Q 013144          358 DLRQASWFSAVPWSVMAFTGYLGGLLSDML  387 (449)
Q Consensus       358 s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~  387 (449)
                      ++...+..+..++++..+--++.+....|+
T Consensus       323 ~~~~g~~~l~~~gLG~~~Plll~~~~~~~~  352 (571)
T PRK00293        323 DLLLGGLTLYLLALGMGLPLILITTFGNKL  352 (571)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            344455566666666655455555555444

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=89.28  E-value=23  Score=34.71  Aligned_cols=72  Identities=13%  Similarity=0.060  Sum_probs=56.4

Q ss_pred             HHHHhhhhhhhhhHHHHHHhhccC-cchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchHHHHHHHHHHHH
Q 013144          196 RAVVGLAEGVALPAMNNMVARWFP-QTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFL  267 (449)
Q Consensus       196 r~l~G~g~g~~~~~~~~~i~~~~~-~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~  267 (449)
                      -++.|+........--..+.+.+| +++|...+|-++...++..++..++++.+.+.+||.....+.-++.++
T Consensus       273 vi~y~~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~~~a~i~Pii~li  345 (472)
T TIGR00769       273 VIAYGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWLTAALITPLVMLL  345 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            345666666667777778888886 457899999999998888878888889999999999888776655544

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]

Probab=85.54  E-value=28  Score=31.56  Aligned_cols=81  Identities=14%  Similarity=0.076  Sum_probs=49.7

Q ss_pred             chhHHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhh---cCCchHHHHH
Q 013144           94 TSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDY---YGGKIIMAWG  170 (449)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr---~Grr~~l~~~  170 (449)
                      ..++....+++.+++++.-...+..+-.+..+.+.+|.-....++..++......      .+-.++   ||.||.=+++
T Consensus        20 ~~r~l~~~~~L~~~f~~iE~i~g~~s~SlaLLADa~Hml~D~~al~lal~A~~~a------~r~~~~~~TfGy~R~eiLa   93 (296)
T COG1230          20 NERRLLIALLLNLAFMLIEIIGGLLTGSLALLADALHMLSDALALLLALIAIKLA------RRPATKRFTFGYKRLEILA   93 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHHHh------cCCCCCCCCccHhHHHHHH
Confidence            3444555566666666666666677777788888888766666666665544432      233333   7888766666


Q ss_pred             HHHHHHHHHH
Q 013144          171 VALWSLATFL  180 (449)
Q Consensus       171 ~~~~~i~~~~  180 (449)
                      .++.++..+.
T Consensus        94 a~~nav~Li~  103 (296)
T COG1230          94 AFLNALLLIV  103 (296)
T ss_pred             HHHHHHHHHH
Confidence            5555554443

>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter

Probab=85.31  E-value=17  Score=36.31  Aligned_cols=71  Identities=8%  Similarity=0.200  Sum_probs=34.4

Q ss_pred             HHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHH
Q 013144          318 RRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQ  389 (449)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~  389 (449)
                      .++||.|+- ...+..+...............++.-..-+++..-|.+.....+..++.+.++|+.+-|+-+
T Consensus       252 gDVFR~P~~-~~lls~lvG~G~Qll~~~~~~~~~a~~g~~~~~~rg~l~t~~i~~y~~~~~iaGy~S~~~yk  322 (521)
T PF02990_consen  252 GDVFRPPKH-PMLLSALVGTGIQLLFMALVTLFFAALGFLSPNNRGSLLTAAIILYALTSFIAGYVSARLYK  322 (521)
T ss_pred             HHHhcCcCC-chHHHhHhcchhhhhHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            477887762 22222222222222233333333333222455555555555555566666677777666644

Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=85.19  E-value=9.1  Score=34.04  Aligned_cols=135  Identities=13%  Similarity=0.075  Sum_probs=83.2

Q ss_pred             hHHHHHHHHHHHHHhhccchhhhhhcCCc--hHHHHHHHHHHHHHHHhh----hccc-hhHHHHHHHHHHHhhhhhhhhh
Q 013144          136 SGIVQSSFLWGYLVSPIAGGTLVDYYGGK--IIMAWGVALWSLATFLTP----WAAD-TSLLALLAMRAVVGLAEGVALP  208 (449)
Q Consensus       136 ~g~~~s~~~~~~~~~~~~~G~l~dr~Grr--~~l~~~~~~~~i~~~~~~----~~~~-~~~~~l~~~r~l~G~g~g~~~~  208 (449)
                      -|.+.+.++++.++|+-+..++..|-..|  ..+.+..++..+...+..    .++. .+...=+++..+.-.+.|..+|
T Consensus       284 hGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwP  363 (454)
T KOG4332|consen  284 HGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWP  363 (454)
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcch
Confidence            48999999999999999998888876665  345555444444433322    2211 1222224555556667788999


Q ss_pred             HHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchHHHHHHHHHHHHHHH
Q 013144          209 AMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVL  270 (449)
Q Consensus       209 ~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~  270 (449)
                      ....+=+++.|++.|...+.++-.-.++=..++-..--.=....+-|..|-++.+...+..+
T Consensus       364 SimkmRsqyIPEearstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~~~~~a~i  425 (454)
T KOG4332|consen  364 SIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSAFLFVASI  425 (454)
T ss_pred             HHHHHHHhhCCHHHHhhhhhheechhhHhhhhhheecccccCccccchhhhhhHHHHHHHHH
Confidence            99999999999999999998876554443333211100000012456777776665554433

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=84.63  E-value=15  Score=32.48  Aligned_cols=101  Identities=14%  Similarity=0.195  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHHHhhccchhhhhh-cCCchHHH----HHHHHHHHHHHHhhhc-cch--hHHHHHHHHHHHhhhhhhhhh
Q 013144          137 GIVQSSFLWGYLVSPIAGGTLVDY-YGGKIIMA----WGVALWSLATFLTPWA-ADT--SLLALLAMRAVVGLAEGVALP  208 (449)
Q Consensus       137 g~~~s~~~~~~~~~~~~~G~l~dr-~Grr~~l~----~~~~~~~i~~~~~~~~-~~~--~~~~l~~~r~l~G~g~g~~~~  208 (449)
                      ....-++..|..+|.+..|++... +.||+.+.    .++++..+..+..+.. ..+  ++..+++.-++.|+..=+..+
T Consensus       144 ~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ~  223 (267)
T PF07672_consen  144 PIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQG  223 (267)
T ss_pred             HHHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhhH
Confidence            445556777777888888888775 45555333    3344444444432121 112  466788888888887544444


Q ss_pred             HHHHHHhhcc--CcchhhHHHHHHHHhhhhhhHh
Q 013144          209 AMNNMVARWF--PQTERARAVAIAMGGFTSGNAI  240 (449)
Q Consensus       209 ~~~~~i~~~~--~~~~rg~~~~~~~~~~~~G~~~  240 (449)
                      +...+=-|+=  .|++-|..+|+   .+++|.++
T Consensus       224 ViL~lPhEyK~~~pk~ig~~Fg~---iWGfGY~~  254 (267)
T PF07672_consen  224 VILNLPHEYKGYNPKKIGIQFGL---IWGFGYIF  254 (267)
T ss_pred             HHhcChhhhcCCCcceehhHHHH---HHHHHHHH
Confidence            4333333322  33444444444   44555443

>KOG2881 consensus Predicted membrane protein [Function unknown]

Probab=84.38  E-value=28  Score=30.56  Aligned_cols=16  Identities=19%  Similarity=0.171  Sum_probs=9.0

Q ss_pred             HHHHHHHHHHHHHHHh
Q 013144          375 FTGYLGGLLSDMLIQR  390 (449)
Q Consensus       375 ~~~~~~g~l~dr~g~~  390 (449)
                      +..+-+-+++.|+..|
T Consensus       255 lAVigGk~lAskIS~r  270 (294)
T KOG2881|consen  255 LAVIGGKYLASKISVR  270 (294)
T ss_pred             HHHhhhHHHhhhheeE
Confidence            3333444567777766

>PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length

Probab=83.59  E-value=27  Score=29.88  Aligned_cols=41  Identities=20%  Similarity=0.267  Sum_probs=24.2

Q ss_pred             chhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchHHHHHHH
Q 013144          221 TERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFG  262 (449)
Q Consensus       221 ~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~  262 (449)
                      +++.+.-.......-++..+|..+++.+.+..+.+ ..++.+
T Consensus       158 ~~~~~~~~~~~~~~i~~f~~Ga~~ga~l~~~~~~~-al~~~~  198 (209)
T PF06912_consen  158 KDRALRRALRYLLIILSFFIGAILGALLYRRLGFW-ALLLPA  198 (209)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHH
Confidence            33333444455556667777777777777777753 334333

The function of this family is unknown although a few members are thought to be membrane proteins.

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=83.21  E-value=39  Score=31.41  Aligned_cols=152  Identities=18%  Similarity=0.198  Sum_probs=87.5

Q ss_pred             hhhhhhhhhhhhc-CCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHH-------HHHhhhccchh
Q 013144          117 VMSVAIVPLSLAH-GWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLA-------TFLTPWAADTS  188 (449)
Q Consensus       117 ~~~~~~~~l~~~~-~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~-------~~~~~~~~~~~  188 (449)
                      +.-.++..+...+ |-.--|.+.+.+.|.....+|+...-++.|---.-+.+..-.++..++       .+.+++-..++
T Consensus        25 vyElal~tLatyLlG~~Ilq~S~Iia~yl~amGlGs~~sry~~dd~~~~~Fv~vElllgligg~Sa~~ly~~FA~~~~~~  104 (508)
T COG4262          25 VYELALGTLATYLLGGGILQTSLIIAGYLAAMGLGSLLSRYVLDDAALARFVDVELLLGLIGGVSAAALYLLFALESAPS  104 (508)
T ss_pred             HHHHHHHHHHHHhcCCceeehHHHHHHHHHHhchhhhhhccccCchHHHHHHHHHHHHHHhccchHHHHHHHHHhccchH
Confidence            3334444555544 556678899999999999999998888777533322222222222221       11222222357


Q ss_pred             HHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHH-HhhhCchHHHHHHHHHHHH
Q 013144          189 LLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPIL-MSQAGIFGPFVIFGLSGFL  267 (449)
Q Consensus       189 ~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l-~~~~gwr~~f~~~~~~~~~  267 (449)
                      -+.+++.-++.|.-.|...|..+.++..-.  .+-....+.....-.+|...+.++-.++ ....|---.-...+++.++
T Consensus       105 ~~Vly~lt~vIG~LVG~EiPL~mrml~~r~--a~~k~~~s~vl~~DYLGal~~gLl~p~lllP~LGl~rta~laG~~Nl~  182 (508)
T COG4262         105 RLVLYALTAVIGVLVGAEIPLLMRMLQRRQ--AKAKDLGSRVLTLDYLGALAGGLLWPFLLLPRLGLVRTAALAGLCNLA  182 (508)
T ss_pred             HHHHHHHHHHHHHHHhcchHHHHHHHHHHH--HHHHhhhhhhhhhHhhhhhhHHHHHHHHHhhhhccHHHHHHHHHHHHH
Confidence            888899999999999999999999888722  1222222333333556666666655554 3344533333334444444


Q ss_pred             HHH
Q 013144          268 WVL  270 (449)
Q Consensus       268 ~~~  270 (449)
                      ..+
T Consensus       183 aAv  185 (508)
T COG4262         183 AAV  185 (508)
T ss_pred             HHH
Confidence            443

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=81.87  E-value=7.5  Score=36.47  Aligned_cols=139  Identities=9%  Similarity=-0.055  Sum_probs=85.1

Q ss_pred             hhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHH----HHHHHHHHHHhhhc---c------
Q 013144          119 SVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWG----VALWSLATFLTPWA---A------  185 (449)
Q Consensus       119 ~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~----~~~~~i~~~~~~~~---~------  185 (449)
                      ..+.+.-.-|.|++..+.+++.-...-..++.+...|.+....-+-.+.+-+    .....+...+....   .      
T Consensus       285 da~t~LkLle~Gv~ke~Lal~~v~~~plqI~l~~~~gk~ta~~~pl~~~lka~~~R~~~~~~~t~Lv~~~~~~~~~~G~~  364 (510)
T KOG3574|consen  285 DALTSLKLLEHGVPKEELALIAVPLVPLQIALPLYIGKWTAGPRPLNVFLKAVPYRLGGGLVQTALVWWTPTLGHSDGTF  364 (510)
T ss_pred             hhccchHHHHcCCChhHheeeeeehhhHHHhhhhhheeecCCCCcchHHHHhhhHHHHHHHHHHHHHhhhcccccCCCce
Confidence            3344555568899999888877444444444444455554422111111111    11111111111111   0      


Q ss_pred             chhHHH-HHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchHH
Q 013144          186 DTSLLA-LLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGP  257 (449)
Q Consensus       186 ~~~~~~-l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~  257 (449)
                      ...+.. ++....+.+...-..+...++..+++.+|.--|..|.+.+...++|.-.-..+...+.+.++|.-+
T Consensus       365 ~~~~~il~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~ltv~~C  437 (510)
T KOG3574|consen  365 PRGYYILLITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLADGLTVKQC  437 (510)
T ss_pred             eechHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcccCceeec
Confidence            012333 344466777767777888999999999999999999999999999998888888888887777644

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	449
1pw4_A	451	Crystal Structure Of The Glycerol-3-Phosphate Trans		1e-04

>pdb|1PW4|A Chain A, Crystal Structure Of The Glycerol-3-Phosphate Transporter From E.Coli Length = 451

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 98/254 (38%), Gaps = 24/254 (9%)
Query: 123 VPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWS---LATF 179
           +P  +  G+SR   G   S     Y  S    G++ D    ++ +  G+ L +   L   
Sbjct: 51  MPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMG 110
Query: 180 LTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNA 239
             PWA  +S+  +  +  + G  +G+  P     +  W+ Q ER   V++       G  
Sbjct: 111 FVPWAT-SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGG 169
Query: 240 IGLVLSPILMS-----QAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRH--PQISKYELE 292
           I  +L  + M+      A ++ P         L  L   +    TP     P I +Y+ +
Sbjct: 170 IPPLLFLLGMAWFNDWHAALYMP----AFCAILVALFAFAMMRDTPQSCGLPPIEEYKND 225
Query: 293 Y--ILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIY 350
           Y     EK +  L   +     V+P   +LL     W I +AN       + IL W P Y
Sbjct: 226 YPDDYNEKAEQELTAKQIFMQYVLP--NKLL-----WYIAIANVFVYLLRYGILDWSPTY 278
Query: 351 FNFVYHIDLRQASW 364
              V H  L ++SW
Sbjct: 279 LKEVKHFALDKSSW 292

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	449
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	7e-54
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	4e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	5e-04

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score =  185 bits (471), Expect = 7e-54
 Identities = 60/345 (17%), Positives = 118/345 (34%), Gaps = 23/345 (6%)

Query: 97  RVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGT 156
           R ++   +    A     R   ++A+ P  +  G+SR   G   S     Y  S    G+
Sbjct: 26  RWQIFLGIFFGYAAYYLVRKNFALAM-PYLVEQGFSRGDLGFALSGISIAYGFSKFIMGS 84

Query: 157 LVDYYGGKIIMAWGVALWSLATFLTPWA--ADTSLLALLAMRAVVGLAEGVALPAMNNMV 214
           + D    ++ +  G+ L +       +   A +S+  +  +  + G  +G+  P     +
Sbjct: 85  VSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTM 144

Query: 215 ARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQA-----GIFGPFVIFGLSGFLWV 269
             W+ Q ER   V++    +   + +G  + P+L                +      L  
Sbjct: 145 VHWWSQKERGGIVSV----WNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVA 200

Query: 270 LVWLSATSSTPD--RHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTW 327
           L   +    TP     P I +Y+ +Y     +K      + +        + +L     W
Sbjct: 201 LFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKA-----EQELTAKQIFMQYVLPNKLLW 255

Query: 328 SIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDML 387
            I +AN       + IL W P Y   V H  L ++SW   +          L G +SD +
Sbjct: 256 YIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV 315

Query: 388 IQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLA 432
            +     T    +      +     +  +  A +P +    + + 
Sbjct: 316 FRGNRGATGVFFMT----LVTIATIVYWMNPAGNPTVDMICMIVI 356

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375

 Score = 51.1 bits (123), Expect = 4e-07
 Identities = 37/295 (12%), Positives = 88/295 (29%), Gaps = 36/295 (12%)

Query: 141 SSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVG 200
            ++L  Y VS +  G + D  G + ++  G++++ LAT +      +SL  L+A  A+ G
Sbjct: 42  GAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT--SSLTVLIAASAMQG 99

Query: 201 LAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG---IFGP 257
           +  GV       +    + +T+   A ++   G      +  ++  +L +       +  
Sbjct: 100 MGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLF 159

Query: 258 FVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPF 317
            ++        +  W+  T        ++        L                     +
Sbjct: 160 LLVLCAGVTFSMARWMPETRPVDAPRTRL--------LTS-------------------Y 192

Query: 318 RRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTG 377
           + L         ++       G     +   +    V  +     S    +P        
Sbjct: 193 KTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAF--- 249

Query: 378 YLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLA 432
             G   +    +R +++     I   +  +   I           ++  A L   
Sbjct: 250 -FGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFF 303

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 2e-05
 Identities = 33/255 (12%), Positives = 64/255 (25%), Gaps = 93/255 (36%)

Query: 180 LTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARW-------FPQTERARAVAIAMG 232
           L      T+   L ++     +AE     ++ + +A W         +       ++   
Sbjct: 318 LPREVLTTNPRRL-SI-----IAE-----SIRDGLATWDNWKHVNCDKLTTIIESSLN-- 364

Query: 233 GFTSGNAIGLVLSPILMSQAGIFGPFVIF--------GLSGFLW---------VLVWLSA 275
                     VL P    +  +F    +F         L   +W         V+V    
Sbjct: 365 ----------VLEPAEYRK--MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH 412

Query: 276 TSSTPDRHPQISKYELEYI-LREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANA 334
             S  ++ P+ S   +  I L  K K       H         R ++         +   
Sbjct: 413 KYSLVEKQPKESTISIPSIYLELKVKLENEYALH---------RSIVDHYN-----IPKT 458

Query: 335 MHSWGFFVILSWMPIYFNFVYHI-----------------DLRQASWFSA------VPWS 371
             S            Y +  +H+                 D R   +           W+
Sbjct: 459 FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR---FLEQKIRHDSTAWN 515

Query: 372 VMAFTGYLGGLLSDM 386
               +G +   L  +
Sbjct: 516 A---SGSILNTLQQL 527

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Length = 438

 Score = 41.1 bits (96), Expect = 5e-04
 Identities = 45/329 (13%), Positives = 92/329 (27%), Gaps = 29/329 (8%)

Query: 119 SVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLAT 178
            + +     A   +   +G++QS+F +GY + PI  G L+     K  +  G+ L++L  
Sbjct: 46  DILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGA 105

Query: 179 FL-TPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSG 237
            L  P A   +    L    ++    G    A N  V    P++     + +    F   
Sbjct: 106 ALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNL-AQTF--- 161

Query: 238 NAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKY-------- 289
           N+ G +++ +      I              +     +           + Y        
Sbjct: 162 NSFGAIIAVVFGQSL-ILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVL 220

Query: 290 ---ELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSW 346
               L  + +         +  K  +      RL         ++A   +        S+
Sbjct: 221 LVALLIMLTKFPALQSDNHSDAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSY 280

Query: 347 MPIYFN-FVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIG 405
           +  Y    +  +    A+ +            + G  L               K+L +  
Sbjct: 281 LIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAP--------HKVLAAYA 332

Query: 406 FIAPGIALIGLTAAKSPVMASAWLTLAIG 434
            IA  + LI      +             
Sbjct: 333 LIAMALCLISAF---AGGHVGLIALTLCS 358

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	449
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	100.0
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	100.0
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.98
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.96
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.96
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.92
2xut_A	524	Proton/peptide symporter family protein; transport	99.89
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.66
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.55
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.55
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.37
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.37
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.22
2xut_A	524	Proton/peptide symporter family protein; transport	98.99

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=100.00  E-value=1.6e-34  Score=279.45  Aligned_cols=296  Identities=15%  Similarity=0.132  Sum_probs=249.2

Q ss_pred             hHHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHH
Q 013144           96 ERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWS  175 (449)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~  175 (449)
                      +++..+..+++..+..+++.....+..|.+.+++|++..+.|++.+.+.++..++.+++|+++||+|||++++++.++.+
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~  102 (438)
T 3o7q_A           23 SYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYA  102 (438)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHH
Confidence            34566667777888888888899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHh---hhccchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHH-hh
Q 013144          176 LATFLT---PWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILM-SQ  251 (449)
Q Consensus       176 i~~~~~---~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~-~~  251 (449)
                      ++.+++   +++  ++++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.++++.+++.+. +.
T Consensus       103 ~~~~~~~~~~~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  180 (438)
T 3o7q_A          103 LGAALFWPAAEI--MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSN  180 (438)
T ss_dssp             HHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTS
T ss_pred             HHHHHHHhcccc--ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            999999   888  999999999999999999999999999999999999999999999999999999999999998 55


Q ss_pred             hC-------------------------chHHHHHHHHHHHHHHHHHHHh-cCCCCCCCCCCCHHHHHHHHHhccCccccC
Q 013144          252 AG-------------------------IFGPFVIFGLSGFLWVLVWLSA-TSSTPDRHPQISKYELEYILREKQKPLLMG  305 (449)
Q Consensus       252 ~g-------------------------wr~~f~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (449)
                      .+                         ||+.|++.+++.++..++.++. .||.+++.+                     
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~---------------------  239 (438)
T 3o7q_A          181 VPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNH---------------------  239 (438)
T ss_dssp             SCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCC---------------------
T ss_pred             cccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccccc---------------------
Confidence            44                         9999988877766655554443 232222110                     


Q ss_pred             CCCCCCCCchhHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHH
Q 013144          306 NKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIY-FNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLS  384 (449)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~  384 (449)
                      ++++++....++++++|+|.++...+..++..........++|.| +++.+|++..+++.......++.+++.++.+++.
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~  319 (438)
T 3o7q_A          240 SDAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLI  319 (438)
T ss_dssp             CCSSTTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            111223334577889999999999999898888889999999999 8888899999999999999999999999999999


Q ss_pred             HHHHHhCCCchhhHHHHHHHHhHHHHHHHHHhhcccchh
Q 013144          385 DMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPV  423 (449)
Q Consensus       385 dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (449)
                      ||+++|         ..+..+.+..+++++.+...++.+
T Consensus       320 ~r~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~  349 (438)
T 3o7q_A          320 SRFAPH---------KVLAAYALIAMALCLISAFAGGHV  349 (438)
T ss_dssp             HHSCHH---------HHHHHHHHHHHHHHHHHHHCCHHH
T ss_pred             HHhcch---------HHHHHHHHHHHHHHHHHHHcCCcH
Confidence            999988         344455555556655555555444

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=100.00  E-value=1.8e-34  Score=280.22  Aligned_cols=291  Identities=19%  Similarity=0.217  Sum_probs=245.6

Q ss_pred             cchhHHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHH
Q 013144           93 ITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVA  172 (449)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~  172 (449)
                      .++.++..+..+++..+...++...+.+.+|.+.+++ .+..+.|++.+++.++..++++++|+++||+|||++++++.+
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~  100 (451)
T 1pw4_A           22 YRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLI  100 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHH
Confidence            3455677888888899999999999999999999999 999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhh----ccchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHH
Q 013144          173 LWSLATFLTPW----AADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPIL  248 (449)
Q Consensus       173 ~~~i~~~~~~~----~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l  248 (449)
                      +.+++.+++++    +  ++++.++++|+++|++.+...+...+++.|++|+++|++++++...+..+|.+++|.+++.+
T Consensus       101 ~~~~~~~~~~~~~~~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  178 (451)
T 1pw4_A          101 LAAAVMLFMGFVPWAT--SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG  178 (451)
T ss_dssp             HHHHHHHHHHHCHHHH--SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcc--ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999    8  89999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhC-chHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccCccccCCCCCCCCCch-hHHHhhccccH
Q 013144          249 MSQAG-IFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIP-PFRRLLSKMPT  326 (449)
Q Consensus       249 ~~~~g-wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  326 (449)
                      .+..| ||+.|++.+++.++..++.++..||+|++.+..+.++.+...+.. .   ..+++++..... ..++.+++|.+
T Consensus       179 ~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~  254 (451)
T 1pw4_A          179 MAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDD-Y---NEKAEQELTAKQIFMQYVLPNKLL  254 (451)
T ss_dssp             HHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-----------------CCTHHHHHHTSSCHHH
T ss_pred             HHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhccccccc-c---hhhhhcccccccchHHHHHcCHHH
Confidence            89898 999999999888877777777777766543221111100000000 0   000011111111 24678899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHH--HHh
Q 013144          327 WSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDML--IQR  390 (449)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--g~~  390 (449)
                      +...+..++.....+.+..++|.|+++.+|+++.++++......++.+++.++.|++.||+  ++|
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~  320 (451)
T 1pw4_A          255 WYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNR  320 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            9999999999999999999999999998899999999999999999999999999999999  776

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.98  E-value=3.5e-32  Score=257.62  Aligned_cols=263  Identities=14%  Similarity=0.148  Sum_probs=233.1

Q ss_pred             HHHHHHHHHHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHh
Q 013144          102 SMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLT  181 (449)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~  181 (449)
                      .++++..+...++...+.+..|.+.+++|.++.+.+++.+.+.++..+++++.|+++||+|||+++.++.++.+++.++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~   82 (375)
T 2gfp_A            3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVA   82 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence            45667777888888899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchHHHHHH
Q 013144          182 PWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIF  261 (449)
Q Consensus       182 ~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~  261 (449)
                      +++  ++++.+++.|+++|++.+...+...+++.|++|+++|++++++.+....+|..++|.+++.+.+..|||+.|++.
T Consensus        83 ~~~--~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~  160 (375)
T 2gfp_A           83 VTT--SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFL  160 (375)
T ss_dssp             HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred             HHh--ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHH
Confidence            999  999999999999999999999999999999999999999999999999999999999999999888999999998


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccCccccCCCCCCCCCchhHHHhhccccHHHHHHHHHHHHHHHH
Q 013144          262 GLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFF  341 (449)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (449)
                      +++.++..+...+..||+++++++                        +++...++++++|+|.++...+..++......
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (375)
T 2gfp_A          161 LVLCAGVTFSMARWMPETRPVDAP------------------------RTRLLTSYKTLFGNSGFNCYLLMLIGGLAGIA  216 (375)
T ss_dssp             HHHHHHHHCCCCCSSCCCSTTTCC------------------------CCCTTTCSTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCcccCCCCcc------------------------cccHHHHHHHHhcCcchHHHHHHHHHHHHHHH
Confidence            888777665445555555432211                        01122345678889999999999999898999


Q ss_pred             HHHHHHHHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 013144          342 VILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR  390 (449)
Q Consensus       342 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~  390 (449)
                      .+..+.|.|+++.+|+++.+++.......++.+++.++.+++.||.+++
T Consensus       217 ~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~  265 (375)
T 2gfp_A          217 AFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL  265 (375)
T ss_dssp             HHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999998899999999999999999999999999999998864

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.96  E-value=6.5e-29  Score=243.77  Aligned_cols=293  Identities=15%  Similarity=0.127  Sum_probs=211.3

Q ss_pred             chhHHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhhcCC--------CchhhHHHHHHHHHHHHHhhccchhhhhhcCCch
Q 013144           94 TSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGW--------SRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKI  165 (449)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~  165 (449)
                      +++.+.+..+.+++.++.++|...++.+++.+.++++.        +..+.|++.+++.+|..++++++|+++||+|||+
T Consensus         7 ~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~   86 (491)
T 4gc0_A            7 SSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRD   86 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence            34556666777888899999999999999999887743        3456789999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhh------------------ccchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHH
Q 013144          166 IMAWGVALWSLATFLTPW------------------AADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAV  227 (449)
Q Consensus       166 ~l~~~~~~~~i~~~~~~~------------------~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~  227 (449)
                      +++++.+++.++++++++                  +  +|+++++++|+++|+|.|...+....+++|+.|+++|++..
T Consensus        87 ~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a--~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~  164 (491)
T 4gc0_A           87 SLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLA--GYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLV  164 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGG--GCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhH
Confidence            999999999999999884                  5  89999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhhHhHHHHHHHHHhh--------hCchHHHHHHHHHHHHHHHHHHHhcCCCCCCC-CCCCHHHHHHHHHhc
Q 013144          228 AIAMGGFTSGNAIGLVLSPILMSQ--------AGIFGPFVIFGLSGFLWVLVWLSATSSTPDRH-PQISKYELEYILREK  298 (449)
Q Consensus       228 ~~~~~~~~~G~~~g~~l~~~l~~~--------~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  298 (449)
                      ++.+.+..+|.++++.++..+...        .+||+.+.+..+..++..+ ..+..||+|+.. .+.+.++..+..++.
T Consensus       165 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~peSp~~L~~~~~~~~a~~~l~~~  243 (491)
T 4gc0_A          165 SFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLM-LLYTVPESPRWLMSRGKQEQAEGILRKI  243 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHH-HGGGSCCCHHHHHHTTCHHHHHHHHHHH
T ss_pred             HhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhh-hhhcCCCChHHHHHcCchhHHHHhHHHh
Confidence            999999999999999998887653        2467676666665555443 445567777532 111112111111100


Q ss_pred             cCc-c-----cc-CCCCCCCCCchhHHHhhccccHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCcccchhhHhhHHH
Q 013144          299 QKP-L-----LM-GNKHKPATVIPPFRRLLSKMPTWSII-VANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPW  370 (449)
Q Consensus       299 ~~~-~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~  370 (449)
                      ... .     .. .+...+..........++.++..... ...+.+..+.+.+..+.+.+.+. .+.+...........+
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  322 (491)
T 4gc0_A          244 MGNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKT-LGASTDIALLQTIIVG  322 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-SSCCHHHHHHHHHHHH
T ss_pred             cCCchhHHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHh-cCCCccchhhHHHHHH
Confidence            000 0     00 00000000001112233334443333 33344444556666677766666 5777777777778888


Q ss_pred             HHHHHHHHHHHHHHHHHHHh
Q 013144          371 SVMAFTGYLGGLLSDMLIQR  390 (449)
Q Consensus       371 ~~~~~~~~~~g~l~dr~g~~  390 (449)
                      +..+++.++.+++.||+|||
T Consensus       323 ~~~~~~~~~~~~l~dr~Grr  342 (491)
T 4gc0_A          323 VINLTFTVLAIMTVDKFGRK  342 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHCSH
T ss_pred             HHHHHHHHHHHHHHHhhcCc
Confidence            88999999999999999998

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.96  E-value=3e-27  Score=231.94  Aligned_cols=283  Identities=14%  Similarity=0.145  Sum_probs=203.6

Q ss_pred             cCCCchhhHHHHHHHHHHHHHhhccchhhhhh-cCCchHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhh
Q 013144          129 HGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDY-YGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVAL  207 (449)
Q Consensus       129 ~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr-~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~  207 (449)
                      +|.+..+.+++.+.+.++..++++++|+++|| +|||+++.++.++.+++.++++++  ++++.++++|+++|++.+...
T Consensus        49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~  126 (491)
T 4aps_A           49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALP--FGASALFGSIILIIIGTGFLK  126 (491)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSC--CSTTHHHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999 899999999999999999999999  999999999999999999999


Q ss_pred             hHHHHHHhhccCcch--hhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHhcCCCCCCC--
Q 013144          208 PAMNNMVARWFPQTE--RARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRH--  283 (449)
Q Consensus       208 ~~~~~~i~~~~~~~~--rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~--  283 (449)
                      +...++++|++|+++  |+.++++++.+.++|..++|.+++.+.+..|||+.|++.++..++..+..++..++..++.  
T Consensus       127 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (491)
T 4aps_A          127 PNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYL  206 (491)
T ss_dssp             HHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCS
T ss_pred             chHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCccccccccc
Confidence            999999999999988  7888999999999999999999999999999999999987776665555544433222111  


Q ss_pred             ---CCCCHHHHHHHHHhc----------------cCccccCCC-----------------CCCCCCchhHHHhhccccHH
Q 013144          284 ---PQISKYELEYILREK----------------QKPLLMGNK-----------------HKPATVIPPFRRLLSKMPTW  327 (449)
Q Consensus       284 ---~~~~~~~~~~~~~~~----------------~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~  327 (449)
                         ...++++.++..+..                .......+.                 ...+.......+..+....+
T Consensus       207 ~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (491)
T 4aps_A          207 RPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYI  286 (491)
T ss_dssp             CCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHH
T ss_pred             CCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence               111222222211110                000000000                 00000000001111223345


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHhH
Q 013144          328 SIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFI  407 (449)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~  407 (449)
                      ...+..++....+.....++|.|+++..+.+....+.......++.+++.++.+++.||++||+...    ...+..+.+
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~----~~~~~~~~~  362 (491)
T 4aps_A          287 PLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSS----PTKFAVGLM  362 (491)
T ss_dssp             HHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---C----HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCc----hHHHHHHHH
Confidence            5555566666666667788899999877888788899999999999999999999999999884321    122334444


Q ss_pred             HHHHHHHHhh
Q 013144          408 APGIALIGLT  417 (449)
Q Consensus       408 ~~~~~~~~~~  417 (449)
                      ..+++++.+.
T Consensus       363 ~~~~~~~~~~  372 (491)
T 4aps_A          363 FAGLSFLLMA  372 (491)
T ss_dssp             HHHHHHTTTH
T ss_pred             HHHHHHHHHH
Confidence            4455544443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.92  E-value=9.3e-25  Score=209.45  Aligned_cols=280  Identities=14%  Similarity=0.075  Sum_probs=185.9

Q ss_pred             Hhhhhhhhhh-hhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHH---HHhhhccchhHH
Q 013144          115 RVVMSVAIVP-LSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLAT---FLTPWAADTSLL  190 (449)
Q Consensus       115 ~~~~~~~~~~-l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~---~~~~~~~~~~~~  190 (449)
                      .....+.+|. +++++|.++.+.|++.+.+.++..++++++|+++||+|||++++++..+.+++.   ..+.+.  +...
T Consensus        23 ~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~--~~~~  100 (417)
T 2cfq_A           23 MGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFG--PLLQ  100 (417)
T ss_dssp             HHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHH--HHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence            3344455555 566799999999999999999999999999999999999999999888776532   222232  2221


Q ss_pred             -HHHHHHHHHhhhhhhhhhHHHHHHhhccCc--chhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchHHHHHHHHHHHH
Q 013144          191 -ALLAMRAVVGLAEGVALPAMNNMVARWFPQ--TERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFL  267 (449)
Q Consensus       191 -~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~--~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~  267 (449)
                       .++..+++.|++.+...+.....+.++.++  ++|+...+.......+|..++|.+++++.+ .+||+.|++.++..++
T Consensus       101 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~  179 (417)
T 2cfq_A          101 YNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALI  179 (417)
T ss_dssp             TTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTT
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHH
Confidence             244566666666665554444445555433  456777888888899999999999999987 5899999987666544


Q ss_pred             HHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccCccccCCCCCCCCCchhHHHhhccccHHHHHHHHHHHHHHHHHHHHHH
Q 013144          268 WVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWM  347 (449)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (449)
                      ..+..++..||+++..+..+                ..+.++++....++++++|+|.++...+..+.....+..+..++
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (417)
T 2cfq_A          180 LAVLLFFAKTDAPSSATVAN----------------AVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQF  243 (417)
T ss_dssp             HHHHSCSSCCCCSCSSCSSS----------------SSSSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCccccccccccc----------------ccccccccccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHH
Confidence            44333333333322110000                00001112223456678899998877776665555666666778


Q ss_pred             HHHHHHhhCC---cccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHhHHHHHHHHHhhcccch
Q 013144          348 PIYFNFVYHI---DLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSP  422 (449)
Q Consensus       348 ~~~~~~~~g~---s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (449)
                      |.|+.+.++.   +....++......++.+++.++.++++||+|||         .++..+.+..++..+.+...++.
T Consensus       244 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~---------~~l~~~~~~~~~~~~~~~~~~~~  312 (417)
T 2cfq_A          244 ANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGK---------NALLLAGTIMSVRIIGSSFATSA  312 (417)
T ss_dssp             HHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH---------HHHHHHHHHHHHHHHHHTTCCSH
T ss_pred             HHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHH---------HHHHHHHHHHHHHHHHHHHhccH
Confidence            9888775442   234456777777788889999999999999988         33444555555555555544443

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.89  E-value=2.5e-22  Score=198.53  Aligned_cols=165  Identities=18%  Similarity=0.184  Sum_probs=143.0

Q ss_pred             HHHHHhHhhhhhhh-hhhhhhcC------CCchhhHHHHHHHHHHHHHhhccchhhhhhc-CCchHHHHHHHHHHHHHHH
Q 013144          109 ALCNADRVVMSVAI-VPLSLAHG------WSRSFSGIVQSSFLWGYLVSPIAGGTLVDYY-GGKIIMAWGVALWSLATFL  180 (449)
Q Consensus       109 ~~~~~~~~~~~~~~-~~l~~~~~------~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~~i~~~~  180 (449)
                      +...+..+...+.+ +.+.+++|      .+..+.+++.+++.++..++.++.|+++||+ |||+++.++.++.+++.++
T Consensus        22 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~  101 (524)
T 2xut_A           22 ACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAF  101 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence            33333333333333 44677889      9999999999999999999999999999999 9999999999999999999


Q ss_pred             hhhccch-hHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHH---HHHhhhhhhHhHHHHHHHHHhhhCchH
Q 013144          181 TPWAADT-SLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAI---AMGGFTSGNAIGLVLSPILMSQAGIFG  256 (449)
Q Consensus       181 ~~~~~~~-~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~---~~~~~~~G~~~g~~l~~~l~~~~gwr~  256 (449)
                      ++++  + +++.++++|++.|++.+...+...+++.|++|+++|+++.+.   ...+.++|.++||.+++.+.+..|||+
T Consensus       102 ~~~~--~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~  179 (524)
T 2xut_A          102 LAIF--EHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAV  179 (524)
T ss_dssp             HHHT--SSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHH
T ss_pred             HHHh--cccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHH
Confidence            9998  8 999999999999999999999999999999999999876666   899999999999999999999899999


Q ss_pred             HHHHHHHHHHHHHHHHHHh
Q 013144          257 PFVIFGLSGFLWVLVWLSA  275 (449)
Q Consensus       257 ~f~~~~~~~~~~~~~~~~~  275 (449)
                      .|++.+++.++..+..++.
T Consensus       180 ~f~~~~~~~~~~~~~~~~~  198 (524)
T 2xut_A          180 AFGIPGVLMFVATVFFWLG  198 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            9999888776655555443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.66  E-value=1.3e-15  Score=147.30  Aligned_cols=169  Identities=11%  Similarity=-0.034  Sum_probs=142.3

Q ss_pred             HHHHHHHhHhhhhhhhhhhhhh-cCCCchhhHHHHHHHHHHHHHhhccchhhhhhc--CCchHHHHHHHHHH-HHHHHhh
Q 013144          107 ALALCNADRVVMSVAIVPLSLA-HGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYY--GGKIIMAWGVALWS-LATFLTP  182 (449)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~--Grr~~l~~~~~~~~-i~~~~~~  182 (449)
                      ..++............|.+.++ +|.+..+.+++.+...++..++.++.|++.||+  |||+.+.++.++.. ++.++..
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (451)
T 1pw4_A          260 ANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYW  339 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH
Confidence            3333444444555566666555 899999999999999999999999999999999  99999988887777 6777666


Q ss_pred             hccchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhh-hhHhHHHHHHHHHhhhCchHHHHHH
Q 013144          183 WAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTS-GNAIGLVLSPILMSQAGIFGPFVIF  261 (449)
Q Consensus       183 ~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~-G~~~g~~l~~~l~~~~gwr~~f~~~  261 (449)
                      +.+..+.+.+.+..++.|++.+...+....++.|.+|+++|+++.++......+ |..++|.+.+.+.+..||+..|++.
T Consensus       340 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~  419 (451)
T 1pw4_A          340 MNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVM  419 (451)
T ss_dssp             SCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHH
T ss_pred             HhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence            653347888888889999999988999999999999999999999999999999 9999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHh
Q 013144          262 GLSGFLWVLVWLSA  275 (449)
Q Consensus       262 ~~~~~~~~~~~~~~  275 (449)
                      +++.++..++.++.
T Consensus       420 ~~~~~~~~~~~~~~  433 (451)
T 1pw4_A          420 IGGSILAVILLIVV  433 (451)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            88877766655554

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.55  E-value=1.2e-13  Score=132.82  Aligned_cols=148  Identities=11%  Similarity=0.118  Sum_probs=124.4

Q ss_pred             hhhhhhhhh-h-hhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhccchhHHHHHH
Q 013144          117 VMSVAIVPL-S-LAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLA  194 (449)
Q Consensus       117 ~~~~~~~~l-~-~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~  194 (449)
                      ......|.+ . +.+|.+..+.+++.+...++..++.++.|+++||+|||+++.++.++..++.++..+.  ++.+.++.
T Consensus       276 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  353 (438)
T 3o7q_A          276 ACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA--GGHVGLIA  353 (438)
T ss_dssp             HHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHH
T ss_pred             HHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHc--CCcHHHHH
Confidence            444444544 4 4459999999999999999999999999999999999999999999999999888887  77665554


Q ss_pred             HHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhC-chHHHHHHHHHHHHHH
Q 013144          195 MRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG-IFGPFVIFGLSGFLWV  269 (449)
Q Consensus       195 ~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~g-wr~~f~~~~~~~~~~~  269 (449)
                      . ++.|++.+...+...++..|.+|++ ++.+.++.. ...+|..++|.+.+.+.+..| ++..|++.++..++..
T Consensus       354 ~-~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~  426 (438)
T 3o7q_A          354 L-TLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIF  426 (438)
T ss_dssp             H-HHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHH
T ss_pred             H-HHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            4 8899999999999999999999855 888888877 566999999999999999999 9999988665544433

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.55  E-value=5.2e-14  Score=134.59  Aligned_cols=146  Identities=14%  Similarity=0.093  Sum_probs=125.5

Q ss_pred             chhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhhhHHHH
Q 013144          133 RSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNN  212 (449)
Q Consensus       133 ~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~  212 (449)
                      ....++..+...++..++.++.|+++||+|||+++..+.++.+++.++.++.  ++.+.+++..++.+++.+...+....
T Consensus       258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~  335 (417)
T 2cfq_A          258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA--TSALEVVILKTLHMFEVPFLLVGCFK  335 (417)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC--CSHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566888888888999999999999999999999999999888888777777  78888888888889888777778889


Q ss_pred             HHhhccCcchhhHHHHH-HHHhhhhhhHhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHhcCCCC
Q 013144          213 MVARWFPQTERARAVAI-AMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTP  280 (449)
Q Consensus       213 ~i~~~~~~~~rg~~~~~-~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~  280 (449)
                      ++.|.+|++.|+.+.++ ++....+|..++|.++|.+.+..|+...|.+.++++++..++.++..++++
T Consensus       336 ~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~  404 (417)
T 2cfq_A          336 YITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG  404 (417)
T ss_dssp             HHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred             HHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence            99999999999999999 488888999999999999999888999999888887777666665555443

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.37  E-value=2.9e-11  Score=118.02  Aligned_cols=171  Identities=19%  Similarity=0.095  Sum_probs=128.0

Q ss_pred             HHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhcc---ch
Q 013144          111 CNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAA---DT  187 (449)
Q Consensus       111 ~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~---~~  187 (449)
                      .......+....+.+.+..+.+............+...++.++.+++.||+|||+.++.+.....++.+..+...   .+
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~  368 (491)
T 4gc0_A          289 QFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAP  368 (491)
T ss_dssp             HHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccc
Confidence            333344455556777788888888888888888899999999999999999999999999888888776654331   12


Q ss_pred             hHHHHHHH-HHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHH------hhhCchHHHHH
Q 013144          188 SLLALLAM-RAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILM------SQAGIFGPFVI  260 (449)
Q Consensus       188 ~~~~l~~~-r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~------~~~gwr~~f~~  260 (449)
                      +...++.. -+..+++. ...+....+.+|.+|.+.|+.++|+......+|..+++.+...+.      ...++.+.|++
T Consensus       369 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i  447 (491)
T 4gc0_A          369 GIVALLSMLFYVAAFAM-SWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWI  447 (491)
T ss_dssp             HHHHHHHHHHHHHHHHT-TTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHH
T ss_pred             hHHHHHHHHHHHHHHHh-HHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence            22222222 22233332 345677899999999999999999999999999999888776653      24567888999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCC
Q 013144          261 FGLSGFLWVLVWLSATSSTPDR  282 (449)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~  282 (449)
                      .+.++++..++.+++.||++.+
T Consensus       448 ~~~~~~~~~i~~~~~~PETkg~  469 (491)
T 4gc0_A          448 YGCMGVLAALFMWKFVPETKGK  469 (491)
T ss_dssp             HHHHHHHHHHHHHHHCCCCTTC
T ss_pred             HHHHHHHHHHHHHheecCCCCC
Confidence            9999888888888888887653

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.37  E-value=7e-13  Score=129.56  Aligned_cols=161  Identities=16%  Similarity=0.075  Sum_probs=125.5

Q ss_pred             hhhhhhhhhh-hhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHH-----HHHHHHHHHHHHhhhcc-----
Q 013144          117 VMSVAIVPLS-LAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMA-----WGVALWSLATFLTPWAA-----  185 (449)
Q Consensus       117 ~~~~~~~~l~-~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~-----~~~~~~~i~~~~~~~~~-----  185 (449)
                      ......+... +.++.+..+.+++.+...++..++.++.|++.||+|||+...     .+.++.+++.++.++..     
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (491)
T 4aps_A          301 QGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGT  380 (491)
T ss_dssp             GGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCC
T ss_pred             hccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            3344444443 446766678889999999999999999999999999987655     77777777776665530     


Q ss_pred             --chhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchHHHHHHHH
Q 013144          186 --DTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGL  263 (449)
Q Consensus       186 --~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~  263 (449)
                        ..+.+.+++.-++.|++.+...+....++.|.+|+++|+.+.|+......+|..+++.+.+.+.+ .++.+.|++.++
T Consensus       381 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~  459 (491)
T 4aps_A          381 SGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGL  459 (491)
T ss_dssp             CTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHH
T ss_pred             CCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHH
Confidence              12777888888999999999999999999999999999999999999999999999999888765 477888888887


Q ss_pred             HHHHHHHHHHHhcCC
Q 013144          264 SGFLWVLVWLSATSS  278 (449)
Q Consensus       264 ~~~~~~~~~~~~~~~  278 (449)
                      ++++..++.++..++
T Consensus       460 ~~~~~~~~~~~~~~~  474 (491)
T 4aps_A          460 GSVVLGIVLVFLSKR  474 (491)
T ss_dssp             HHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHH
Confidence            777766666665544

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.22  E-value=7.4e-12  Score=117.77  Aligned_cols=153  Identities=16%  Similarity=0.044  Sum_probs=117.4

Q ss_pred             HHHHHHHhHhhhhhhhhhhhhh-cCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHH-HHHHHH--Hhh
Q 013144          107 ALALCNADRVVMSVAIVPLSLA-HGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVAL-WSLATF--LTP  182 (449)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~-~~i~~~--~~~  182 (449)
                      ..+.............|.+.++ +|.++.+.+++.+...++..++.++.|++.||+|++  +..+..+ ..++..  ...
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~~  284 (375)
T 2gfp_A          207 MLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLMWIPD  284 (375)
T ss_dssp             HHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHh
Confidence            3334444444555566666555 899999999999999999999999999999999883  2333322 222222  122


Q ss_pred             hccchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchHHHHHHH
Q 013144          183 WAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFG  262 (449)
Q Consensus       183 ~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~  262 (449)
                      ....++.+.+++..++.|++.+...+...+++.|..| ++|+++.++.+....+|..++|.+.+.+.+..+|+..+++.+
T Consensus       285 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~  363 (375)
T 2gfp_A          285 WFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTL  363 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred             hhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence            2111477778888899999999999999999999998 899999999999999999999999999988878887777643

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.99  E-value=7.3e-10  Score=109.05  Aligned_cols=144  Identities=14%  Similarity=0.036  Sum_probs=104.2

Q ss_pred             hhHHHHHHHHHHHHHhhccchhhh----hhcCCc----hHHHHHHHHHHHHHHHhhhcc-------chhHHHHHHHHHHH
Q 013144          135 FSGIVQSSFLWGYLVSPIAGGTLV----DYYGGK----IIMAWGVALWSLATFLTPWAA-------DTSLLALLAMRAVV  199 (449)
Q Consensus       135 ~~g~~~s~~~~~~~~~~~~~G~l~----dr~Grr----~~l~~~~~~~~i~~~~~~~~~-------~~~~~~l~~~r~l~  199 (449)
                      ..+++.+...++..++.++.+++.    ||.|+|    +.+.++.++.+++.++.++..       ..+.+.+++..++.
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  415 (524)
T 2xut_A          336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALL  415 (524)
T ss_dssp             CHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Confidence            466777777777778888887775    555543    567778888888877776641       13677788889999


Q ss_pred             hhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhh--Cc---------hHHHHHHHHHHHHH
Q 013144          200 GLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQA--GI---------FGPFVIFGLSGFLW  268 (449)
Q Consensus       200 G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~--gw---------r~~f~~~~~~~~~~  268 (449)
                      |++.+...+...+++.|.+|+++||+++|+......+|..+||.+.+.+.+..  +|         +..|++.+.+.++.
T Consensus       416 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  495 (524)
T 2xut_A          416 TFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILA  495 (524)
T ss_dssp             HHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999887632  23         33366666666666


Q ss_pred             HHHHHHhcCC
Q 013144          269 VLVWLSATSS  278 (449)
Q Consensus       269 ~~~~~~~~~~  278 (449)
                      .++.++..++
T Consensus       496 ~~~~~~~~~~  505 (524)
T 2xut_A          496 AIVFALYARS  505 (524)
T ss_dssp             HHHHC-----
T ss_pred             HHHHHHHHHH
Confidence            5555555443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	449
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	2e-17
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	9e-06
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	0.003

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 81.7 bits (200), Expect = 2e-17
 Identities = 59/338 (17%), Positives = 116/338 (34%), Gaps = 9/338 (2%)

Query: 97  RVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGT 156
           R ++   +    A     R   ++A+ P  +  G+SR   G   S     Y  S    G+
Sbjct: 23  RWQIFLGIFFGYAAYYLVRKNFALAM-PYLVEQGFSRGDLGFALSGISIAYGFSKFIMGS 81

Query: 157 LVDYYGGKIIMAWGVALWSLATFLTPW--AADTSLLALLAMRAVVGLAEGVALPAMNNMV 214
           + D    ++ +  G+ L +       +   A +S+  +  +  + G  +G+  P     +
Sbjct: 82  VSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTM 141

Query: 215 ARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLS 274
             W+ Q ER   V++       G  I  +L  + M+    +   +      F  +LV L 
Sbjct: 142 VHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMP--AFCAILVALF 199

Query: 275 ATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANA 334
           A +   D         +E    +         + +        + +L     W I +AN 
Sbjct: 200 AFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANV 259

Query: 335 MHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSV 394
                 + IL W P Y   V H  L ++SW   +          L G +SD + +     
Sbjct: 260 FVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGA 319

Query: 395 TLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLA 432
           T     +  +  +     +  +  A +P +    + + 
Sbjct: 320 T----GVFFMTLVTIATIVYWMNPAGNPTVDMICMIVI 353

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 45.5 bits (106), Expect = 9e-06
 Identities = 34/314 (10%), Positives = 81/314 (25%), Gaps = 4/314 (1%)

Query: 116 VVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWS 175
                  + L   +  S+S +GI+ ++     L+     G L D  G +  + W +    
Sbjct: 25  AYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGML 84

Query: 176 LATFL----TPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAM 231
           +                 + + ++   + L       A                    A 
Sbjct: 85  VMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRAR 144

Query: 232 GGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYEL 291
                G A+G  +  I+ +    F  ++  G +  L VL++ + T +        +    
Sbjct: 145 MFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGAN 204

Query: 292 EYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYF 351
                 K    L          +       +               +      + +  Y 
Sbjct: 205 HSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYV 264

Query: 352 NFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGI 411
             +  +      +F+ +  + +     L    + M ++   S   T  +   I       
Sbjct: 265 TTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMF 324

Query: 412 ALIGLTAAKSPVMA 425
            +  L       + 
Sbjct: 325 EVPFLLVGCFKYIT 338

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 37.1 bits (84), Expect = 0.003
 Identities = 24/221 (10%), Positives = 60/221 (27%), Gaps = 3/221 (1%)

Query: 54  VGLRTIVGCRVRTGVSSNDKSFDLAPNEDEALAPNFLEFITSERVKVVSMLALALALCNA 113
           +    +   +     S+   +   A +   +L      F   +   +   +       + 
Sbjct: 179 ILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDV 238

Query: 114 DRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVAL 173
                +                 G V +               +++  GGK  +     +
Sbjct: 239 FDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTI 298

Query: 174 WSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMG- 232
            S+    + +A  TS L ++ ++ +        L      +   F     A    +    
Sbjct: 299 MSVRIIGSSFA--TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCF 356

Query: 233 GFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWL 273
                     VL+  +    G  G +++ GL    + L+ +
Sbjct: 357 FKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISV 397

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	449
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	100.0
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.89
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.66
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.57

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.1e-33  Score=271.60  Aligned_cols=294  Identities=18%  Similarity=0.220  Sum_probs=244.2

Q ss_pred             cchhHHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHH
Q 013144           93 ITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVA  172 (449)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~  172 (449)
                      .++.+|.++..++++++..+++...++.+.|.+. |+|+|.+++|++.+++.+++.++++++|+++||+|||+++.++.+
T Consensus        19 ~~~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~   97 (447)
T d1pw4a_          19 YRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLI   97 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence            4566788888889999999999999998888876 589999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhcc--chhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHh
Q 013144          173 LWSLATFLTPWAA--DTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS  250 (449)
Q Consensus       173 ~~~i~~~~~~~~~--~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~  250 (449)
                      +.+++.++++++.  .++++.+++.|++.|++.|...+...+++.|++|+++|++++++.+.+..+|..+++.+++.+..
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~  177 (447)
T d1pw4a_          98 LAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMA  177 (447)
T ss_dssp             HHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred             HHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhh
Confidence            9999999888761  13678899999999999999999999999999999999999999999999999999999988776


Q ss_pred             hh-CchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccCccccCCCCCCCCCchhHHHhhccccHHHH
Q 013144          251 QA-GIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSI  329 (449)
Q Consensus       251 ~~-gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (449)
                      .. +||+.|++.+++.++..++.++..+++|+.......++.+....+..   ....+++........+..++++.++..
T Consensus       178 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (447)
T d1pw4a_         178 WFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDY---NEKAEQELTAKQIFMQYVLPNKLLWYI  254 (447)
T ss_dssp             HTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC----------------CCTHHHHHHTSSCHHHHHH
T ss_pred             hhhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhhhhcccch---hhccccccchhhHHHHHHHcCchHHHH
Confidence            54 79999999998888888888888777776543322221110000000   000111222333456678889999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 013144          330 IVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR  390 (449)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~  390 (449)
                      ....++.....+....+.|.|+.+.++++..+.+.......++.+++.++.|++.||++|+
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  315 (447)
T d1pw4a_         255 AIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRG  315 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT
T ss_pred             HHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhcccc
Confidence            9999999999999999999999998899999999999999999999999999999999876

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=2.3e-21  Score=182.33  Aligned_cols=299  Identities=13%  Similarity=0.018  Sum_probs=200.4

Q ss_pred             HHHHHHHHHHHhHhhhhhhhhh-hhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHh
Q 013144          103 MLALALALCNADRVVMSVAIVP-LSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLT  181 (449)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~  181 (449)
                      .+.+..+...+......+.+|. +.+++|+|++++|++.+++.++..++++++|+++||+|||++++++..+..++..+.
T Consensus        11 ~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~   90 (417)
T d1pv7a_          11 MFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPF   90 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence            3444445555566666777776 677899999999999999999999999999999999999999999999999988888


Q ss_pred             hhccchhHHH----HHHHHHHHhhhhhhhhhHHHHHHhhccCc--chhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCch
Q 013144          182 PWAADTSLLA----LLAMRAVVGLAEGVALPAMNNMVARWFPQ--TERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIF  255 (449)
Q Consensus       182 ~~~~~~~~~~----l~~~r~l~G~g~g~~~~~~~~~i~~~~~~--~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr  255 (449)
                      .+.  .+...    .++.+.+.+.+.+...........+..++  +++....+........+..+++.+++.+.+. +|+
T Consensus        91 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~  167 (417)
T d1pv7a_          91 FIF--IFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI-NNQ  167 (417)
T ss_dssp             HHH--THHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH-CHH
T ss_pred             HHh--hhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccc-ccc
Confidence            776  54443    34556666666555555544444444432  3456677788888899999999999998765 666


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccCccccCCCCCCCCCchhHHHhhccccHHHHHHHHHH
Q 013144          256 GPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAM  335 (449)
Q Consensus       256 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (449)
                      +.+........+..++.++..++.++..+..+++                ++.+++.......+.++++..+........
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (417)
T d1pv7a_         168 FVFWLGSGCALILAVLLFFAKTDAPSSATVANAV----------------GANHSAFSLKLALELFRQPKLWFLSLYVIG  231 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHH----------------HSCCCCCCHHHHHHHTTSSHHHHHHHHHHH
T ss_pred             ccccchhhHHHHHHHHHHHHhcccccchhhhhhh----------------hhhcccccccccccccccccccchhhhhHH
Confidence            6666666666666666666666655443332221                111222233344455556655555555444


Q ss_pred             HHHHHHHHHHHHHHHHHHh---hCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHhHHHHHH
Q 013144          336 HSWGFFVILSWMPIYFNFV---YHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIA  412 (449)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~---~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~  412 (449)
                      ............+.+....   .+.+....+.......++..++..+.+++.||.+++         ..+..+.+..++.
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~---------~~~~~~~~~~~~~  302 (417)
T d1pv7a_         232 VSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGK---------NALLLAGTIMSVR  302 (417)
T ss_dssp             HHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHH---------HHHHHHHHHHHHH
T ss_pred             HHHHHHhhhccccccccccccccccchhhhcccccccccccccchhhhhhhhcccccc---------cchhhhHHHHHHh
Confidence            4444444444444433321   233445566777778888899999999999999988         4556666667777


Q ss_pred             HHHhhcccchhHHHHHH
Q 013144          413 LIGLTAAKSPVMASAWL  429 (449)
Q Consensus       413 ~~~~~~~~~~~~~~~~~  429 (449)
                      .+.+...++.+......
T Consensus       303 ~~~~~~~~~~~~~~~~~  319 (417)
T d1pv7a_         303 IIGSSFATSALEVVILK  319 (417)
T ss_dssp             HHHHHTCCCHHHHHHHH
T ss_pred             hhccccccccchhhHHH
Confidence            77777776666444333

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.66  E-value=4.5e-16  Score=145.55  Aligned_cols=158  Identities=13%  Similarity=0.076  Sum_probs=139.2

Q ss_pred             hhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHH
Q 013144          120 VAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVV  199 (449)
Q Consensus       120 ~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~  199 (449)
                      .......++.+.+....+...+...++..++..+.+++.||+|+|+.+.++.++.+++.++.++.  ++.+.+++..++.
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~  322 (417)
T d1pv7a_         245 NFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA--TSALEVVILKTLH  322 (417)
T ss_dssp             HHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTC--CCHHHHHHHHHHH
T ss_pred             ccccccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccc--cccchhhHHHHHH
Confidence            33444445555677788899999999999999999999999999999999999999999999999  9999999999999


Q ss_pred             hhhhhhhhhHHHHHHhhccCcchhhHHHHHH-HHhhhhhhHhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHhcCC
Q 013144          200 GLAEGVALPAMNNMVARWFPQTERARAVAIA-MGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSS  278 (449)
Q Consensus       200 G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~-~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~  278 (449)
                      |++.+...+...+++.|.+|+++|+++.++. +....+|..++|.++|++.+..||++.|++.+++.++..++..+..++
T Consensus       323 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~  402 (417)
T d1pv7a_         323 MFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSG  402 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            9999999999999999999999999999986 456779999999999999999999999999988888777776666544


Q ss_pred             C
Q 013144          279 T  279 (449)
Q Consensus       279 ~  279 (449)
                      +
T Consensus       403 ~  403 (417)
T d1pv7a_         403 P  403 (417)
T ss_dssp             S
T ss_pred             C
Confidence            3

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.57  E-value=2.5e-14  Score=135.53  Aligned_cols=155  Identities=12%  Similarity=-0.007  Sum_probs=123.0

Q ss_pred             hhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHH---HHHHHHHhhhccchhHHHHHHHHH
Q 013144          121 AIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVAL---WSLATFLTPWAADTSLLALLAMRA  197 (449)
Q Consensus       121 ~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~---~~i~~~~~~~~~~~~~~~l~~~r~  197 (449)
                      ....+.+.++.+..+.++..+...++..++.++.|++.||++||+........   ..++.++.......+.+..++.-+
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (447)
T d1pw4a_         272 SPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMI  351 (447)
T ss_dssp             HHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHH
T ss_pred             hhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence            34446667899999999999999999999999999999999987644333332   233333333333367888888888


Q ss_pred             HHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhh-hhHhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHh
Q 013144          198 VVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTS-GNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSA  275 (449)
Q Consensus       198 l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~-G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~  275 (449)
                      +.|++.+...+....+..|.+|++.||.+.|+.+....+ |.+++|.+.+.+.+..||+..|++.+...++..++..+.
T Consensus       352 ~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  430 (447)
T d1pw4a_         352 VIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV  430 (447)
T ss_dssp             HHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence            999999888999999999999999999999999887776 567789999999999999999988777766655554444