Citrus Sinensis ID: 013161

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------45
MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADEEGEYEDEEEGELEHHI
cccEEEEEcccccccccccEEEEcccccccccccccccccccccccccEEEEcccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccEEEEcccccccccHHHHHHHHHHHcccccccEEEEEEccccccccccccccccccccccccccEEEEEcHHHHHHHHHHcccccccccccHHHHHHHHHHcccccccccccccccHHHHHcccccccccccccccccccccccccccccccHHHHHHHHccccccEEEcccccccHHHHHHHccccccHHHHHHHHHHHHHccccccccccccccEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccc
ccEEEEEEEcccccHHHHHHHHHHHHHccccccccccccccccHcHEEEEEEccccccEccEEEEEEcccccHHHEcccccccccccccEEEcccccccccccccccHHHHHHHHHHHHHHHHHHccccccEEEEEEccccccccHHHHHHHHHHHHHccccccEEEEEEcccccccEEEccccHEEEHHHHEccccEEEEEccHHHHHHHHHHccccccccccHHHHHHHHHHHHcEEEcccccccccHHHHHHHccccccEcccccccccccccccHHHHHccHHHHHHHHccHHHHHHHcccccccEEEEEEEEcccccHHHHHHHHHHHHcccccEEEEccccccEEEEEccccccccEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHccc
mreilhvqggqcgnqigSKFWEVVCdehgidptgryigtsdlQLERVNVYYneascgrfvpravlmdlepgtmdsvrtgpygqifrpdnfvfgqsgagnnwakghytEGAELIDAVLDVVRKEAencdclqgfqvchslgggtgsgmGTLLISKIReeypdrmmltfsvfpspkvsdtvvepynATLSVHQLVENadecmvldnealYDICFRTlklttpsfgdlNHLISATMSGvtcclrfpgqlnsDLRKLAVnlipfprlhffmvgfapltsrgsqqyraltVPELTQQMWDAKNmmcaadprhgryltaSAMFRGKMSTKEVDEQMINVQNKNSSYFVEwipnnvkssvcdipprglsmastfignSTSIQEMFRRVSEQFTAMFRRKAFLHWytgegmdemEFTEAESNMNDLVSEYQQYQdatadeegeyedeeegelehhi
mreilhvqggqcgnqigSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHslgggtgsgMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADEEGEYEDeeegelehhi
MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHslgggtgsgmgtllISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAdeegeyedeeegeleHHI
****LHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFR***********MINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEG**********************************************
*REILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ**********************
MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ**********************
MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT*******************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMExxxxxxxxxxxxxxxxxxxxxTADEEGEYEDEEEGELEHHI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query448 2.2.26 [Sep-21-2011]
Q43594447 Tubulin beta-1 chain OS=O yes no 0.984 0.986 0.990 0.0
Q43697445 Tubulin beta-5 chain OS=Z N/A no 0.982 0.988 0.990 0.0
Q9ZPN7446 Tubulin beta-4 chain OS=E N/A no 0.986 0.991 0.986 0.0
Q41785445 Tubulin beta-8 chain OS=Z N/A no 0.982 0.988 0.988 0.0
P93176447 Tubulin beta chain OS=Hor N/A no 0.984 0.986 0.981 0.0
P29502440 Tubulin beta-3 chain (Fra N/A no 0.975 0.993 0.981 0.0
Q9ZPN9448 Tubulin beta-2 chain OS=E N/A no 1.0 1.0 0.973 0.0
Q6VAF8430 Tubulin beta-3 chain OS=G N/A no 0.946 0.986 0.990 0.0
P18025446 Tubulin beta-1 chain OS=Z N/A no 0.959 0.964 0.965 0.0
Q9ZRB2445 Tubulin beta-1 chain OS=T N/A no 0.962 0.968 0.986 0.0
>sp|Q43594|TBB1_ORYSJ Tubulin beta-1 chain OS=Oryza sativa subsp. japonica GN=TUBB1 PE=2 SV=2 Back     alignment and function desciption
 Score =  924 bits (2389), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/441 (99%), Positives = 441/441 (100%)

Query: 1   MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFV 60
           MREILH+QGGQCGNQIGSKFWEVVCDEHGIDPTGRY+GTSDLQLERVNVYYNEASCGRFV
Sbjct: 1   MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGTSDLQLERVNVYYNEASCGRFV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
           PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVV
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
           RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180

Query: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCL 240
           EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCL
Sbjct: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCL 240

Query: 241 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMM 300
           RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMM
Sbjct: 241 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMM 300

Query: 301 CAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRG 360
           CAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRG
Sbjct: 301 CAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRG 360

Query: 361 LSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420
           LSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
Sbjct: 361 LSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420

Query: 421 EYQQYQDATADEEGEYEDEEE 441
           EYQQYQDATADEEG+YEDEEE
Sbjct: 421 EYQQYQDATADEEGDYEDEEE 441
Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha-chain.
Oryza sativa subsp. japonica (taxid: 39947)
>sp|Q43697|TBB5_MAIZE Tubulin beta-5 chain OS=Zea mays GN=TUBB5 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZPN7|TBB4_ELEIN Tubulin beta-4 chain OS=Eleusine indica GN=TUBB4 PE=2 SV=1 Back     alignment and function description
>sp|Q41785|TBB8_MAIZE Tubulin beta-8 chain OS=Zea mays GN=TUBB8 PE=2 SV=1 Back     alignment and function description
>sp|P93176|TBB_HORVU Tubulin beta chain OS=Hordeum vulgare GN=TUBB PE=2 SV=1 Back     alignment and function description
>sp|P29502|TBB3_PEA Tubulin beta-3 chain (Fragment) OS=Pisum sativum GN=TUBB3 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZPN9|TBB2_ELEIN Tubulin beta-2 chain OS=Eleusine indica GN=TUBB2 PE=2 SV=1 Back     alignment and function description
>sp|Q6VAF8|TBB3_GOSHI Tubulin beta-3 chain OS=Gossypium hirsutum PE=2 SV=1 Back     alignment and function description
>sp|P18025|TBB1_MAIZE Tubulin beta-1 chain OS=Zea mays GN=TUBB1 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZRB2|TBB1_WHEAT Tubulin beta-1 chain OS=Triticum aestivum GN=TUBB1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query448
223453022447 beta-tubulin 3 [Gossypium hirsutum] 0.995 0.997 0.986 0.0
224086779448 tubulin, beta chain [Populus trichocarpa 0.988 0.988 0.984 0.0
115436006447 Os01g0282800 [Oryza sativa Japonica Grou 0.984 0.986 0.990 0.0
153799901446 beta-tubulin [Eucalyptus grandis] 0.988 0.993 0.988 0.0
224137646450 tubulin, beta chain [Populus trichocarpa 0.988 0.984 0.984 0.0
162462765445 tubulin beta-5 chain [Zea mays] gi|89284 0.982 0.988 0.990 0.0
8928423446 RecName: Full=Tubulin beta-4 chain; AltN 0.986 0.991 0.986 0.0
51988176448 beta tubulin [Setaria viridis] 0.984 0.984 0.988 0.0
242054715447 hypothetical protein SORBIDRAFT_03g03749 0.984 0.986 0.986 0.0
118488147446 unknown [Populus trichocarpa] 0.984 0.988 0.986 0.0
>gi|223453022|gb|ACM89775.1| beta-tubulin 3 [Gossypium hirsutum] Back     alignment and taxonomy information
 Score =  928 bits (2398), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/446 (98%), Positives = 444/446 (99%)

Query: 1   MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFV 60
           MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIG+SDLQLERVNVYYNEASCGRFV
Sbjct: 1   MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGSSDLQLERVNVYYNEASCGRFV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
           PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120

Query: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
           RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180

Query: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCL 240
           EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCL
Sbjct: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCL 240

Query: 241 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMM 300
           RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMM
Sbjct: 241 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMM 300

Query: 301 CAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRG 360
           CAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRG
Sbjct: 301 CAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRG 360

Query: 361 LSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420
           LSMASTF+GNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
Sbjct: 361 LSMASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420

Query: 421 EYQQYQDATADEEGEYEDEEEGELEH 446
           EYQQYQDATADEEGEYEDEE+ + EH
Sbjct: 421 EYQQYQDATADEEGEYEDEEDLDEEH 446

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224086779|ref|XP_002307960.1| tubulin, beta chain [Populus trichocarpa] gi|222853936|gb|EEE91483.1| tubulin, beta chain [Populus trichocarpa] Back     alignment and taxonomy information
>gi|115436006|ref|NP_001042761.1| Os01g0282800 [Oryza sativa Japonica Group] gi|74053560|sp|Q43594.2|TBB1_ORYSJ RecName: Full=Tubulin beta-1 chain; AltName: Full=Beta-1-tubulin gi|13486716|dbj|BAB39951.1| putative tubulin beta-4 chain [Oryza sativa Japonica Group] gi|15408819|dbj|BAB64211.1| putative beta-tubulin 4 [Oryza sativa Japonica Group] gi|113532292|dbj|BAF04675.1| Os01g0282800 [Oryza sativa Japonica Group] gi|125525429|gb|EAY73543.1| hypothetical protein OsI_01426 [Oryza sativa Indica Group] gi|215768577|dbj|BAH00806.1| unnamed protein product [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|153799901|gb|ABS50669.1| beta-tubulin [Eucalyptus grandis] Back     alignment and taxonomy information
>gi|224137646|ref|XP_002322609.1| tubulin, beta chain [Populus trichocarpa] gi|118486106|gb|ABK94896.1| unknown [Populus trichocarpa] gi|222867239|gb|EEF04370.1| tubulin, beta chain [Populus trichocarpa] Back     alignment and taxonomy information
>gi|162462765|ref|NP_001105458.1| tubulin beta-5 chain [Zea mays] gi|8928421|sp|Q43697.1|TBB5_MAIZE RecName: Full=Tubulin beta-5 chain; AltName: Full=Beta-5-tubulin gi|398849|emb|CAA52720.1| beta-5 tubulin [Zea mays] gi|414877096|tpg|DAA54227.1| TPA: tubulin beta-8 chain isoform 1 [Zea mays] gi|414877097|tpg|DAA54228.1| TPA: tubulin beta-8 chain isoform 2 [Zea mays] gi|414877098|tpg|DAA54229.1| TPA: tubulin beta-8 chain isoform 3 [Zea mays] Back     alignment and taxonomy information
>gi|8928423|sp|Q9ZPN7.1|TBB4_ELEIN RecName: Full=Tubulin beta-4 chain; AltName: Full=Beta-4-tubulin gi|4415996|gb|AAD20181.1| beta-tubulin 4 [Eleusine indica] Back     alignment and taxonomy information
>gi|51988176|emb|CAE52516.1| beta tubulin [Setaria viridis] Back     alignment and taxonomy information
>gi|242054715|ref|XP_002456503.1| hypothetical protein SORBIDRAFT_03g037490 [Sorghum bicolor] gi|241928478|gb|EES01623.1| hypothetical protein SORBIDRAFT_03g037490 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|118488147|gb|ABK95893.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query448
TAIR|locus:2177003449 TUB6 "beta-6 tubulin" [Arabido 0.959 0.957 0.951 2.7e-226
TAIR|locus:505006632449 TUB8 "tubulin beta 8" [Arabido 0.959 0.957 0.939 1.1e-222
TAIR|locus:2172254450 TUB2 "tubulin beta chain 2" [A 0.959 0.955 0.930 2.9e-222
TAIR|locus:2172214450 TUB3 "tubulin beta chain 3" [A 0.959 0.955 0.930 2.9e-222
TAIR|locus:2043082449 TUB7 "tubulin beta-7 chain" [A 0.959 0.957 0.927 3e-220
TAIR|locus:2005724447 TUB1 "tubulin beta-1 chain" [A 0.959 0.961 0.921 3.4e-219
TAIR|locus:2198661449 TUB5 "tubulin beta-5 chain" [A 0.959 0.957 0.904 5.7e-217
TAIR|locus:2158755444 TUB4 "tubulin beta chain 4" [A 0.959 0.968 0.890 5.3e-214
TAIR|locus:2133084444 TUB9 "tubulin beta-9 chain" [A 0.957 0.966 0.895 1.1e-213
GENEDB_PFALCIPARUM|PF10_0084445 PF10_0084 "tubulin beta chain, 0.959 0.966 0.855 2.3e-206
TAIR|locus:2177003 TUB6 "beta-6 tubulin" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2184 (773.9 bits), Expect = 2.7e-226, P = 2.7e-226
 Identities = 409/430 (95%), Positives = 414/430 (96%)

Query:     1 MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFV 60
             MREILH+QGGQCGNQIGSKFWEVVCDEHGIDPTGRY+G SDLQLERVNVYYNEASCGR+V
Sbjct:     1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGNSDLQLERVNVYYNEASCGRYV 60

Query:    61 PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
             PRA+LMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV
Sbjct:    61 PRAILMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120

Query:   121 RKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
             RKEAENCDCLQGFQVCH              ISKIREEYPDRMMLTFSVFPSPKVSDTVV
Sbjct:   121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180

Query:   181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCL 240
             EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCL
Sbjct:   181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCL 240

Query:   241 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMM 300
             RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWD+KNMM
Sbjct:   241 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDSKNMM 300

Query:   301 CAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRG 360
             CAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDI PRG
Sbjct:   301 CAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIAPRG 360

Query:   361 LSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420
             LSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
Sbjct:   361 LSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420

Query:   421 EYQQYQDATA 430
             EYQQYQDATA
Sbjct:   421 EYQQYQDATA 430
GO:0003924 "GTPase activity" evidence=IEA
GO:0005198 "structural molecule activity" evidence=IEA
GO:0005525 "GTP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0005874 "microtubule" evidence=IEA
GO:0006184 "GTP catabolic process" evidence=IEA
GO:0007017 "microtubule-based process" evidence=IEA;ISS
GO:0007018 "microtubule-based movement" evidence=IEA
GO:0043234 "protein complex" evidence=IEA
GO:0051258 "protein polymerization" evidence=IEA
GO:0009409 "response to cold" evidence=IEP
GO:0005200 "structural constituent of cytoskeleton" evidence=ISS
GO:0015630 "microtubule cytoskeleton" evidence=ISS
GO:0005886 "plasma membrane" evidence=IDA
GO:0009651 "response to salt stress" evidence=IEP;RCA
GO:0000271 "polysaccharide biosynthetic process" evidence=RCA
GO:0006084 "acetyl-CoA metabolic process" evidence=RCA
GO:0006094 "gluconeogenesis" evidence=RCA
GO:0006096 "glycolysis" evidence=RCA
GO:0006833 "water transport" evidence=RCA
GO:0006972 "hyperosmotic response" evidence=RCA
GO:0007010 "cytoskeleton organization" evidence=RCA
GO:0007030 "Golgi organization" evidence=RCA
GO:0009266 "response to temperature stimulus" evidence=RCA
GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA
GO:0009825 "multidimensional cell growth" evidence=RCA
GO:0009932 "cell tip growth" evidence=RCA
GO:0010162 "seed dormancy process" evidence=RCA
GO:0010498 "proteasomal protein catabolic process" evidence=RCA
GO:0010817 "regulation of hormone levels" evidence=RCA
GO:0016126 "sterol biosynthetic process" evidence=RCA
GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA
GO:0019344 "cysteine biosynthetic process" evidence=RCA
GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA
GO:0046686 "response to cadmium ion" evidence=RCA
GO:0048767 "root hair elongation" evidence=RCA
GO:0071555 "cell wall organization" evidence=RCA
TAIR|locus:505006632 TUB8 "tubulin beta 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2172254 TUB2 "tubulin beta chain 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2172214 TUB3 "tubulin beta chain 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043082 TUB7 "tubulin beta-7 chain" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2005724 TUB1 "tubulin beta-1 chain" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2198661 TUB5 "tubulin beta-5 chain" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158755 TUB4 "tubulin beta chain 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2133084 TUB9 "tubulin beta-9 chain" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
GENEDB_PFALCIPARUM|PF10_0084 PF10_0084 "tubulin beta chain, putative" [Plasmodium falciparum (taxid:5833)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q40665TBB3_ORYSJNo assigned EC number0.95810.95980.9641yesno
P33630TBB1_ANEPHNo assigned EC number0.93960.96200.9729N/Ano
Q41785TBB8_MAIZENo assigned EC number0.98860.98210.9887N/Ano
P29514TBB6_ARATHNo assigned EC number0.98370.95980.9576yesno
P29516TBB8_ARATHNo assigned EC number0.97200.95980.9576nono
Q41783TBB6_MAIZENo assigned EC number0.98830.95980.9641N/Ano
P37392TBB1_LUPALNo assigned EC number0.96970.95980.9619N/Ano
P11482TBB1_VOLCANo assigned EC number0.92320.95980.9706N/Ano
Q8H7U1TBB2_ORYSJNo assigned EC number0.97200.95980.9619yesno
Q56YW9TBB2_ARATHNo assigned EC number0.96270.95980.9555nono
Q9ZRA9TBB4_WHEATNo assigned EC number0.95110.95980.9662N/Ano
Q9ZRA8TBB5_WHEATNo assigned EC number0.98130.95980.9619N/Ano
P29515TBB7_ARATHNo assigned EC number0.96050.96200.9599yesno
P93176TBB_HORVUNo assigned EC number0.98180.98430.9865N/Ano
Q76FS2TBB8_ORYSJNo assigned EC number0.94400.95750.9618nono
P45960TBB4_ORYSJNo assigned EC number0.98830.95980.9619yesno
Q41784TBB7_MAIZENo assigned EC number0.95110.95980.9662N/Ano
Q76FS3TBB6_ORYSJNo assigned EC number0.99060.95310.9617yesno
Q9ZPP0TBB1_ELEINNo assigned EC number0.95580.95980.9662N/Ano
P12460TBB2_SOYBNNo assigned EC number0.95580.95980.9576nono
P29500TBB1_PEANo assigned EC number0.94650.95980.9555N/Ano
Q43594TBB1_ORYSJNo assigned EC number0.99090.98430.9865yesno
Q39445TBB_CICARNo assigned EC number0.93980.95980.9576N/Ano
P12411TBB1_ARATHNo assigned EC number0.95350.95980.9619nono
P29502TBB3_PEANo assigned EC number0.98160.97540.9931N/Ano
Q40106TBB2_LUPALNo assigned EC number0.96510.95980.9598N/Ano
P29501TBB2_PEANo assigned EC number0.95320.95530.9574N/Ano
P29513TBB5_ARATHNo assigned EC number0.93730.95980.9576nono
P46263TBB1_SOLTUNo assigned EC number0.94670.95750.9512N/Ano
P46264TBB2_SOLTUNo assigned EC number0.94670.95750.9491N/Ano
P46265TBB5_ORYSJNo assigned EC number0.95810.95980.9619yesno
Q9ASR0TBB3_ARATHNo assigned EC number0.96270.95980.9555nono
P18025TBB1_MAIZENo assigned EC number0.96510.95980.9641N/Ano
P18026TBB2_MAIZENo assigned EC number0.97660.95750.9662N/Ano
Q39697TBB2_DAUCANo assigned EC number0.93400.97990.9887N/Ano
P37832TBB7_ORYSJNo assigned EC number0.95330.95750.9662yesno
Q43695TBB3_MAIZENo assigned EC number0.93480.95980.9662N/Ano
O04386TBB_CHLINNo assigned EC number0.92090.95980.9706N/Ano
Q43697TBB5_MAIZENo assigned EC number0.99090.98210.9887N/Ano
Q9ZPN8TBB3_ELEINNo assigned EC number0.95340.95980.9641N/Ano
Q9ZPN9TBB2_ELEINNo assigned EC number0.97321.01.0N/Ano
P04690TBB_CHLRENo assigned EC number0.92320.95980.9706N/Ano
Q6VAF8TBB3_GOSHINo assigned EC number0.99050.94640.9860N/Ano
Q6VAF6TBB6_GOSHINo assigned EC number0.94440.95980.9555N/Ano
Q6VAF7TBB5_GOSHINo assigned EC number0.94900.96420.9707N/Ano
Q6VAF4TBB9_GOSHINo assigned EC number0.95830.96420.9707N/Ano
Q9ZPN7TBB4_ELEINNo assigned EC number0.98640.98660.9910N/Ano
Q9ZRB2TBB1_WHEATNo assigned EC number0.98600.96200.9685N/Ano
Q9ZRB0TBB3_WHEATNo assigned EC number0.95340.95980.9662N/Ano
Q9ZRB1TBB2_WHEATNo assigned EC number0.98130.95980.9619N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query448
PLN00220447 PLN00220, PLN00220, tubulin beta chain; Provisiona 0.0
cd02187425 cd02187, beta_tubulin, The tubulin superfamily inc 0.0
PTZ00010445 PTZ00010, PTZ00010, tubulin beta chain; Provisiona 0.0
COG5023443 COG5023, COG5023, Tubulin [Cytoskeleton] 0.0
cd06059382 cd06059, Tubulin, The tubulin superfamily includes 1e-178
cd02186434 cd02186, alpha_tubulin, The tubulin superfamily in 1e-163
PTZ00335448 PTZ00335, PTZ00335, tubulin alpha chain; Provision 1e-156
PLN00221450 PLN00221, PLN00221, tubulin alpha chain; Provision 1e-147
cd00286328 cd00286, Tubulin_FtsZ, Tubulin/FtsZ: Family includ 1e-144
cd02188431 cd02188, gamma_tubulin, Gamma-tubulin is a ubiquit 1e-130
PLN00222454 PLN00222, PLN00222, tubulin gamma chain; Provision 1e-111
cd02190379 cd02190, epsilon_tubulin, The tubulin superfamily 1e-108
PTZ00387465 PTZ00387, PTZ00387, epsilon tubulin; Provisional 1e-102
pfam00091210 pfam00091, Tubulin, Tubulin/FtsZ family, GTPase do 3e-79
smart00864192 smart00864, Tubulin, Tubulin/FtsZ family, GTPase d 5e-75
cd02189446 cd02189, delta_tubulin, The tubulin superfamily in 1e-72
pfam03953126 pfam03953, Tubulin_C, Tubulin C-terminal domain 8e-69
smart00865120 smart00865, Tubulin_C, Tubulin/FtsZ family, C-term 1e-23
cd02202349 cd02202, FtsZ_type2, FtsZ is a GTPase that is simi 7e-09
cd06060493 cd06060, misato, Human Misato shows similarity wit 1e-06
cd02191303 cd02191, FtsZ, FtsZ is a GTPase that is similar to 4e-04
TIGR00065349 TIGR00065, ftsZ, cell division protein FtsZ 0.004
>gnl|CDD|215107 PLN00220, PLN00220, tubulin beta chain; Provisional Back     alignment and domain information 
 Score = 1044 bits (2700), Expect = 0.0
 Identities = 430/446 (96%), Positives = 437/446 (97%)

Query: 1   MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFV 60
           MREILH+QGGQCGNQIG+KFWEVVCDEHGIDPTG Y G SDLQLER+NVYYNEAS GR+V
Sbjct: 1   MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGTYHGDSDLQLERINVYYNEASGGRYV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
           PRAVLMDLEPGTMDSVR+GPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVV
Sbjct: 61  PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
           RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180

Query: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCL 240
           EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCL
Sbjct: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCL 240

Query: 241 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMM 300
           RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMM
Sbjct: 241 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMM 300

Query: 301 CAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRG 360
           CAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP+G
Sbjct: 301 CAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKG 360

Query: 361 LSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420
           L MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
Sbjct: 361 LKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420

Query: 421 EYQQYQDATADEEGEYEDEEEGELEH 446
           EYQQYQDATADEEGEYEDEEE E   
Sbjct: 421 EYQQYQDATADEEGEYEDEEEEEEYE 446

Length = 447
>gnl|CDD|100016 cd02187, beta_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|240228 PTZ00010, PTZ00010, tubulin beta chain; Provisional Back     alignment and domain information
>gnl|CDD|227356 COG5023, COG5023, Tubulin [Cytoskeleton] Back     alignment and domain information
>gnl|CDD|100023 cd06059, Tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|100015 cd02186, alpha_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|185562 PTZ00335, PTZ00335, tubulin alpha chain; Provisional Back     alignment and domain information
>gnl|CDD|177802 PLN00221, PLN00221, tubulin alpha chain; Provisional Back     alignment and domain information
>gnl|CDD|100014 cd00286, Tubulin_FtsZ, Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation Back     alignment and domain information
>gnl|CDD|100017 cd02188, gamma_tubulin, Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily Back     alignment and domain information
>gnl|CDD|215108 PLN00222, PLN00222, tubulin gamma chain; Provisional Back     alignment and domain information
>gnl|CDD|100019 cd02190, epsilon_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|240395 PTZ00387, PTZ00387, epsilon tubulin; Provisional Back     alignment and domain information
>gnl|CDD|215710 pfam00091, Tubulin, Tubulin/FtsZ family, GTPase domain Back     alignment and domain information
>gnl|CDD|214867 smart00864, Tubulin, Tubulin/FtsZ family, GTPase domain Back     alignment and domain information
>gnl|CDD|100018 cd02189, delta_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|217812 pfam03953, Tubulin_C, Tubulin C-terminal domain Back     alignment and domain information
>gnl|CDD|214868 smart00865, Tubulin_C, Tubulin/FtsZ family, C-terminal domain Back     alignment and domain information
>gnl|CDD|100022 cd02202, FtsZ_type2, FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>gnl|CDD|100024 cd06060, misato, Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria Back     alignment and domain information
>gnl|CDD|100020 cd02191, FtsZ, FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>gnl|CDD|232805 TIGR00065, ftsZ, cell division protein FtsZ Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 448
COG5023443 Tubulin [Cytoskeleton] 100.0
PLN00221450 tubulin alpha chain; Provisional 100.0
PTZ00335448 tubulin alpha chain; Provisional 100.0
PTZ00010445 tubulin beta chain; Provisional 100.0
PLN00220447 tubulin beta chain; Provisional 100.0
cd02188431 gamma_tubulin Gamma-tubulin is a ubiquitous phylog 100.0
PLN00222454 tubulin gamma chain; Provisional 100.0
cd02187425 beta_tubulin The tubulin superfamily includes five 100.0
cd02186434 alpha_tubulin The tubulin superfamily includes fiv 100.0
PTZ00387465 epsilon tubulin; Provisional 100.0
KOG1374448 consensus Gamma tubulin [Cytoskeleton] 100.0
cd02190379 epsilon_tubulin The tubulin superfamily includes f 100.0
cd02189446 delta_tubulin The tubulin superfamily includes fiv 100.0
cd06059382 Tubulin The tubulin superfamily includes five dist 100.0
KOG1376407 consensus Alpha tubulin [Cytoskeleton] 100.0
KOG1375369 consensus Beta tubulin [Cytoskeleton] 100.0
cd00286328 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin 100.0
cd06060493 misato Human Misato shows similarity with Tubulin/ 100.0
PF00091216 Tubulin: Tubulin/FtsZ family, GTPase domain; Inter 100.0
smart00864192 Tubulin Tubulin/FtsZ family, GTPase domain. This d 100.0
cd02202349 FtsZ_type2 FtsZ is a GTPase that is similar to the 99.98
KOG2530483 consensus Members of tubulin/FtsZ family [Cytoskel 99.97
cd02191303 FtsZ FtsZ is a GTPase that is similar to the eukar 99.95
TIGR00065349 ftsZ cell division protein FtsZ. This family consi 99.93
cd02201304 FtsZ_type1 FtsZ is a GTPase that is similar to the 99.92
PRK13018378 cell division protein FtsZ; Provisional 99.91
PF03953126 Tubulin_C: Tubulin C-terminal domain; InterPro: IP 99.89
PRK09330384 cell division protein FtsZ; Validated 99.88
PF14881180 Tubulin_3: Tubulin domain 99.85
COG0206338 FtsZ Cell division GTPase [Cell division and chrom 99.57
PF10644115 Misat_Tub_SegII: Misato Segment II tubulin-like do 99.51
smart00865120 Tubulin_C Tubulin/FtsZ family, C-terminal domain. 98.33
PF13809345 Tubulin_2: Tubulin like 97.58
>COG5023 Tubulin [Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=4.6e-130  Score=937.98  Aligned_cols=431  Identities=54%  Similarity=1.013  Sum_probs=420.6

Q ss_pred             CEeEEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCcCCccccccccccccccCCCCCCccceeecCCCCCccccccccC
Q 013161            1 MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGP   80 (448)
Q Consensus         1 M~EIitiq~Gq~gnqIG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~~~~~~   80 (448)
                      ||||||||+||||||||.+||+++|+||||.++|.+....+.+.++.++||+|++.++|+||||+||+||++|+.+++++
T Consensus         1 mREIItlq~GQcGnQiG~~fWe~~c~EHGI~~~G~~~~~~~~~~er~~vfF~e~~~~k~vPRaI~vDLEP~vid~v~~g~   80 (443)
T COG5023           1 MREIITLQVGQCGNQIGNAFWETLCLEHGIGPDGTLLDSSDEGDERFDVFFYEASDGKFVPRAILVDLEPGVIDQVRNGP   80 (443)
T ss_pred             CceeEEEecccchhHHHHHHHHHHHHhhCcCCCCCCCCCcccccccccceeeecCCCccccceEEEecCcchHhhhccCc
Confidence            99999999999999999999999999999999999766666667899999999999999999999999999999999999


Q ss_pred             CCcccCCCceeecccCCCCCCccCcccchhhhHHHHHHHHHHHhhhcCCCCceeEEecCCCCccccchHHHHHHHHhhcC
Q 013161           81 YGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYP  160 (448)
Q Consensus        81 ~~~~~~~~~~~~~~~~~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~s~~GGTGSG~~s~lle~l~deyp  160 (448)
                      |+.+|+|+++++||+|+|||||+|+|++|+++.|+++|+|||++|.||.||||+++||+|||||||+|+.|+|.|+++||
T Consensus        81 y~~lf~Pen~i~gkegAgNnwA~GhYtvG~e~~ddvmd~IrreAd~cD~LqGF~l~HS~gGGTGSG~GslLLerl~~eyp  160 (443)
T COG5023          81 YGSLFHPENIIFGKEGAGNNWARGHYTVGKEIIDDVMDMIRREADGCDGLQGFLLLHSLGGGTGSGLGSLLLERLREEYP  160 (443)
T ss_pred             cccccChhheeeccccccccccccccchhHHHHHHHHHHHHHHhhcCccccceeeeeeccCcCcccHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceeEEEEEecCCCCCCccchhhHHHHHHHHHhhcCCeeEEecChhhhhhhcccccCCCCCccchhHHHHHHhhcCcccc
Q 013161          161 DRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCL  240 (448)
Q Consensus       161 ~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~  240 (448)
                      ||.+.+++|+|.++.++++|||||++|++++|.|+||+++++||++|+++|.+.+++.+|+|.++|++||++++++|.++
T Consensus       161 kK~~~tfSV~P~p~~Sd~VVePYNsvLt~h~l~ensD~tf~~DNeal~di~~~~L~i~~P~y~~lN~LIs~VmSsvTtsl  240 (443)
T COG5023         161 KKIKLTFSVFPAPKVSDVVVEPYNSVLTLHRLLENSDCTFVVDNEALYDICRRNLRIQNPSYDDLNQLISTVMSSVTTSL  240 (443)
T ss_pred             hhheeEEEeccCCccCcceecccHHHHHHHHHHhcCCceEEechHHHHHHHHHhcCCCCCChHHHHHHHHHHHHhhhhee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCccchhhhhccccccCCccccccccccccccccccccccCHHHHHHhccCCCCcccccCCCCCcceeeecccCCc
Q 013161          241 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGK  320 (448)
Q Consensus       241 r~~~~~~~~~~~l~~~L~P~p~~~fl~~s~~p~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~  320 (448)
                      ||||++|.|+.+|.++|||+|++||+.++|+|++.+....+++.++.++++++|+|+|||++|+|+.|+|++++.++||+
T Consensus       241 RfpG~ln~dl~~~~~nLVP~PrlHF~l~sytP~~s~~~~~~~~~sv~evt~~~f~p~N~mv~~dpr~g~y~~~~~l~rG~  320 (443)
T COG5023         241 RFPGYLNVDLRSIQTNLVPYPRLHFPLVSYTPFTSDGSAAHEKNSVSEVTNQLFDPKNQMVSCDPRKGRYMAVCLLFRGD  320 (443)
T ss_pred             ecCccccchHHHHHhcCCCCCcccccccccCcccchhhHHHhcccHHHHHHHHhCcccceeeecCCCCeeeehhHHHhcC
Confidence            99999999999999999999999999999999999988899999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHhhhccCCcccccccCCCcceeecCCCC---CCCCcceEeecCChhhHHHHHHHHHHHHhhccccccccc
Q 013161          321 MSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP---RGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHW  397 (448)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~---~~~~~s~~~l~N~t~i~~~l~~l~~~~~~m~~kkAflH~  397 (448)
                      +.++++++++.+++.|+...|++|+|+++++++|.++|   ...+.++|+|+|+|+|.+.|+++.++|++||+|||||||
T Consensus       321 v~~~dV~~a~~~v~~k~~~~Fv~W~P~~~~vai~~~~P~~~~~~~~s~~~lsNtTsi~e~fkr~~~qFd~mf~krAFlhw  400 (443)
T COG5023         321 VDPRDVSRAVTRVQSKRTIQFVEWCPTGFKVAICKRPPSEPAEVDVSGCMLSNTTSIAEAFKRIDDQFDLMFKKRAFLHW  400 (443)
T ss_pred             CCHHHHHHHHHHHHhcCcccccccCCcceeeeeeccCCcccccceeeeEeecCcHHHHHHHHHhhhHHHHHHHhhHHHHH
Confidence            99999999999999999999999999999999999998   777899999999999999999999999999999999999


Q ss_pred             ccCCCCChhhHHHHHHHHHHHHHHHHHHHhcccc
Q 013161          398 YTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAD  431 (448)
Q Consensus       398 Y~~~Gmee~eF~ea~~~l~~l~~~Y~~~~~~~~~  431 (448)
                      |+++|||++||.||+++++++.++|+++++...+
T Consensus       401 Y~~egmee~EFsEare~~~~L~~eY~~~~~~s~~  434 (443)
T COG5023         401 YVGEGMEEGEFSEAREDVADLEEEYEAAEQDSYL  434 (443)
T ss_pred             HhhccCcccchhhHHHHHHHHHHHHHHhcccccc
Confidence            9999999999999999999999999999765543

>PLN00221 tubulin alpha chain; Provisional Back     alignment and domain information
>PTZ00335 tubulin alpha chain; Provisional Back     alignment and domain information
>PTZ00010 tubulin beta chain; Provisional Back     alignment and domain information
>PLN00220 tubulin beta chain; Provisional Back     alignment and domain information
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily Back     alignment and domain information
>PLN00222 tubulin gamma chain; Provisional Back     alignment and domain information
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>PTZ00387 epsilon tubulin; Provisional Back     alignment and domain information
>KOG1374 consensus Gamma tubulin [Cytoskeleton] Back     alignment and domain information
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>KOG1376 consensus Alpha tubulin [Cytoskeleton] Back     alignment and domain information
>KOG1375 consensus Beta tubulin [Cytoskeleton] Back     alignment and domain information
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation Back     alignment and domain information
>cd06060 misato Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria Back     alignment and domain information
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins Back     alignment and domain information
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain Back     alignment and domain information
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>KOG2530 consensus Members of tubulin/FtsZ family [Cytoskeleton] Back     alignment and domain information
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>TIGR00065 ftsZ cell division protein FtsZ Back     alignment and domain information
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>PRK13018 cell division protein FtsZ; Provisional Back     alignment and domain information
>PF03953 Tubulin_C: Tubulin C-terminal domain; InterPro: IPR018316 This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins Back     alignment and domain information
>PRK09330 cell division protein FtsZ; Validated Back     alignment and domain information
>PF14881 Tubulin_3: Tubulin domain Back     alignment and domain information
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning] Back     alignment and domain information
>PF10644 Misat_Tub_SegII: Misato Segment II tubulin-like domain; InterPro: IPR019605 The misato protein contains three distinct, conserved domains, segments I, II and III and is involved in the regulation of mitochondrial distribution and morphology [] Back     alignment and domain information
>smart00865 Tubulin_C Tubulin/FtsZ family, C-terminal domain Back     alignment and domain information
>PF13809 Tubulin_2: Tubulin like Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query448
4f61_B445 Tubulin:stathmin-Like Domain Complex Length = 445 0.0
1ffx_B445 Tubulin:stathmin-Like Domain Complex Length = 445 0.0
2xrp_A445 Human Doublecortin N-Dc Repeat (1mjd) And Mammalian 0.0
4drx_B431 Gtp-Tubulin In Complex With A Darpin Length = 431 0.0
3du7_B445 Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domai 0.0
1z2b_B445 Tubulin-Colchicine-Vinblastine: Stathmin-Like Domai 0.0
4i4t_B445 Crystal Structure Of Tubulin-rb3-ttl-zampanolide Co 0.0
3ryc_B445 Tubulin: Rb3 Stathmin-Like Domain Complex Length = 0.0
1tub_B427 Tubulin Alpha-Beta Dimer, Electron Diffraction Leng 0.0
4ffb_B463 A Tog:alphaBETA-Tubulin Complex Structure Reveals C 0.0
4drx_A437 Gtp-Tubulin In Complex With A Darpin Length = 437 3e-99
4i4t_A450 Crystal Structure Of Tubulin-rb3-ttl-zampanolide Co 3e-99
3ryc_A451 Tubulin: Rb3 Stathmin-Like Domain Complex Length = 3e-99
1sa0_A451 Tubulin-Colchicine: Stathmin-Like Domain Complex Le 1e-98
1z2b_A448 Tubulin-Colchicine-Vinblastine: Stathmin-Like Domai 1e-98
3du7_A449 Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domai 2e-98
3hkb_A451 Tubulin: Rb3 Stathmin-Like Domain Complex Length = 2e-98
1ffx_A451 Tubulin:stathmin-Like Domain Complex Length = 451 3e-98
2xrp_B452 Human Doublecortin N-Dc Repeat (1mjd) And Mammalian 6e-98
1jff_A451 Refined Structure Of Alpha-Beta Tubulin From Zinc-I 6e-98
1tub_A440 Tubulin Alpha-Beta Dimer, Electron Diffraction Leng 6e-98
4ffb_A447 A Tog:alphaBETA-Tubulin Complex Structure Reveals C 1e-97
2btq_B426 Structure Of Btubab Heterodimer From Prosthecobacte 3e-84
3cb2_A475 Crystal Structure Of Human Gamma-Tubulin Bound To G 3e-75
1z5v_A474 Crystal Structure Of Human Gamma-Tubulin Bound To G 3e-75
2bto_A473 Structure Of Btuba From Prosthecobacter Dejongeii L 1e-73
>pdb|4F61|B Chain B, Tubulin:stathmin-Like Domain Complex Length = 445 Back     alignment and structure 
Iteration: 1

 Score =  778 bits (2010), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/430 (82%), Positives = 395/430 (91%)
Query: 1   MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFV 60
           MREI+H+Q GQCGNQIG+KFWEV+ DEHGIDPTG Y G SDLQLER+NVYYNEA+  ++V
Sbjct: 1   MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYV 60
Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
           PRA+L+DLEPGTMDSVR+GP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+D+VLDVV
Sbjct: 61  PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 121 RKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
           RKE+E+CDCLQGFQ+ H              ISKIREEYPDR+M TFSV PSPKVSDTVV
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV 180
Query: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCL 240
           EPYNATLSVHQLVEN DE   +DNEALYDICFRTLKLTTP++GDLNHL+SATMSGVT CL
Sbjct: 181 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 241 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMM 300
           RFPGQLN+DLRKLAVN++PFPRLHFFM GFAPLTSRGSQQYRALTVPELTQQM+D+KNMM
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 300
Query: 301 CAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRG 360
            A DPRHGRYLT +A+FRG+MS KEVDEQM+NVQNKNSSYFVEWIPNNVK++VCDIPPRG
Sbjct: 301 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG 360
Query: 361 LSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420
           L M++TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
Sbjct: 361 LKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420
Query: 421 EYQQYQDATA 430
           EYQQYQDATA
Sbjct: 421 EYQQYQDATA 430
>pdb|1FFX|B Chain B, Tubulin:stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|2XRP|A Chain A, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian Tubulin (1jff And 3hke) Docked Into The 8-Angstrom Cryo-Em Map Of Doublecortin-Stabilised Microtubules Length = 445 Back     alignment and structure
>pdb|4DRX|B Chain B, Gtp-Tubulin In Complex With A Darpin Length = 431 Back     alignment and structure
>pdb|3DU7|B Chain B, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|1Z2B|B Chain B, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|4I4T|B Chain B, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex Length = 445 Back     alignment and structure
>pdb|3RYC|B Chain B, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|1TUB|B Chain B, Tubulin Alpha-Beta Dimer, Electron Diffraction Length = 427 Back     alignment and structure
>pdb|4FFB|B Chain B, A Tog:alphaBETA-Tubulin Complex Structure Reveals Conformation-Based Mechanisms For A Microtubule Polymerase Length = 463 Back     alignment and structure
>pdb|4DRX|A Chain A, Gtp-Tubulin In Complex With A Darpin Length = 437 Back     alignment and structure
>pdb|4I4T|A Chain A, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex Length = 450 Back     alignment and structure
>pdb|3RYC|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|1SA0|A Chain A, Tubulin-Colchicine: Stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|1Z2B|A Chain A, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain Complex Length = 448 Back     alignment and structure
>pdb|3DU7|A Chain A, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain Complex Length = 449 Back     alignment and structure
>pdb|3HKB|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|1FFX|A Chain A, Tubulin:stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|2XRP|B Chain B, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian Tubulin (1jff And 3hke) Docked Into The 8-Angstrom Cryo-Em Map Of Doublecortin-Stabilised Microtubules Length = 452 Back     alignment and structure
>pdb|1JFF|A Chain A, Refined Structure Of Alpha-Beta Tubulin From Zinc-Induced Sheets Stabilized With Taxol Length = 451 Back     alignment and structure
>pdb|1TUB|A Chain A, Tubulin Alpha-Beta Dimer, Electron Diffraction Length = 440 Back     alignment and structure
>pdb|4FFB|A Chain A, A Tog:alphaBETA-Tubulin Complex Structure Reveals Conformation-Based Mechanisms For A Microtubule Polymerase Length = 447 Back     alignment and structure
>pdb|2BTQ|B Chain B, Structure Of Btubab Heterodimer From Prosthecobacter Dejongeii Length = 426 Back     alignment and structure
>pdb|3CB2|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To Gdp Length = 475 Back     alignment and structure
>pdb|1Z5V|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To Gtpgammas Length = 474 Back     alignment and structure
>pdb|2BTO|A Chain A, Structure Of Btuba From Prosthecobacter Dejongeii Length = 473 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query448
3ryc_B445 Tubulin beta chain; alpha-tubulin, beta-tubulin, G 0.0
3cb2_A475 Gamma-1-tubulin, tubulin gamma-1 chain; lattice, m 0.0
2bto_A473 Tubulin btuba; bacterial tubulin, polymerization, 0.0
3ryc_A451 Tubulin alpha chain; alpha-tubulin, beta-tubulin, 0.0
2btq_B426 Tubulin btubb; structural protein, cytoskeletal pr 0.0
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
3v3t_A360 Cell division GTPase FTSZ, diverged; TUBZ, tubulin 2e-07
4ei7_A389 Plasmid replication protein REPX; GTP hydrolase, p 2e-05
>3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3hke_B* 3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B* 1z2b_B* 2xrp_A* 1tvk_B* 1tub_B* 1jff_B* 1ia0_B* 1ffx_B* 1sa0_B* 1sa1_B* ... Length = 445 Back     alignment and structure
 Score =  815 bits (2107), Expect = 0.0
 Identities = 376/443 (84%), Positives = 419/443 (94%)

Query: 1   MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFV 60
           MREI+H+Q GQCGNQIG+KFWEV+ DEHGIDPTG Y G SDLQLER+NVYYNEA+  ++V
Sbjct: 1   MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
           PRA+L+DLEPGTMDSVR+GP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+D+VLDVV
Sbjct: 61  PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120

Query: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
           RKE+E+CDCLQGFQ+ HSLGGGTGSGMGTLLISKIREEYPDR+M TFSV PSPKVSDTVV
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV 180

Query: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCL 240
           EPYNATLSVHQLVEN DE   +DNEALYDICFRTLKLTTP++GDLNHL+SATMSGVT CL
Sbjct: 181 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240

Query: 241 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMM 300
           RFPGQLN+DLRKLAVN++PFPRLHFFM GFAPLTSRGSQQYRALTVPELTQQM+D+KNMM
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 300

Query: 301 CAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRG 360
            A DPRHGRYLT + +FRG+MS KEVDEQM+N+QNKNSSYFVEWIPNNVK++VCDIPPRG
Sbjct: 301 AACDPRHGRYLTVATIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRG 360

Query: 361 LSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420
           L M+STFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
Sbjct: 361 LKMSSTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420

Query: 421 EYQQYQDATADEEGEYEDEEEGE 443
           EYQQYQDATADE+GE+E+EE  +
Sbjct: 421 EYQQYQDATADEQGEFEEEEGED 443
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule, nucleation, GTPase, lateral interaction, structural protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB: 1z5v_A* 1z5w_A* Length = 475 Back     alignment and structure
>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton, protein COM cytoskeletal protein; HET: GTP; 2.5A {Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB: 2btq_A* Length = 473 Back     alignment and structure
>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3hke_A* 3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A* 3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* 2p4n_A* 1jff_A* 2wbe_A* 3dco_A* ... Length = 451 Back     alignment and structure
>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex, bacterial tubulin, cytoskeleton, polymerization, verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter dejongeii} Length = 426 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3v3t_A Cell division GTPase FTSZ, diverged; TUBZ, tubulin/FTSZ related, rossmann fold, GTP bindi structural protein; 2.30A {Clostridium botulinum C} Length = 360 Back     alignment and structure
>4ei7_A Plasmid replication protein REPX; GTP hydrolase, plasmid segregation; HET: GDP; 1.90A {Bacillus cereus} PDB: 4ei8_A 4ei9_A* Length = 389 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query448
3ryc_B445 Tubulin beta chain; alpha-tubulin, beta-tubulin, G 100.0
3ryc_A451 Tubulin alpha chain; alpha-tubulin, beta-tubulin, 100.0
3cb2_A475 Gamma-1-tubulin, tubulin gamma-1 chain; lattice, m 100.0
2btq_B426 Tubulin btubb; structural protein, cytoskeletal pr 100.0
2bto_A473 Tubulin btuba; bacterial tubulin, polymerization, 100.0
1w5f_A353 Cell division protein FTSZ; complete proteome, GTP 100.0
2vap_A364 FTSZ, cell division protein FTSZ homolog 1; polyme 100.0
1ofu_A320 FTSZ, cell division protein FTSZ; bacterial cell d 100.0
2vaw_A394 FTSZ, cell division protein FTSZ; bacterial cell d 100.0
2r75_1338 Cell division protein FTSZ; GTPase, tubulin-like, 100.0
1rq2_A382 Cell division protein FTSZ; cell cycle, tubulin, G 100.0
2vxy_A382 FTSZ, cell division protein FTSZ; GTP-binding, nuc 100.0
3m89_A427 FTSZ/tubulin-related protein; partition, TUBZ, GTP 100.0
3v3t_A360 Cell division GTPase FTSZ, diverged; TUBZ, tubulin 99.96
4dxd_A396 Cell division protein FTSZ; rossmann fold, GTPase, 99.96
4ei7_A389 Plasmid replication protein REPX; GTP hydrolase, p 99.73
3r4v_A315 Putative uncharacterized protein; tubulin, unknown 99.29
2e4h_B36 Tubulin alpha-ubiquitous chain; cytoskeleton, CAP- 96.33
>3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3ut5_B* 4eb6_B* 4f6r_B* 4f61_B* 3hke_B* 3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B* 1z2b_B* 2xrp_A* 4aqv_B* 4aqw_B* 4atu_A* ... Back     alignment and structure
Probab=100.00  E-value=1.3e-122  Score=944.85  Aligned_cols=442  Identities=86%  Similarity=1.382  Sum_probs=421.7

Q ss_pred             CEeEEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCcCCccccccccccccccCCCCCCccceeecCCCCCccccccccC
Q 013161            1 MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGP   80 (448)
Q Consensus         1 M~EIitiq~Gq~gnqIG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~~~~~~   80 (448)
                      |||||+||+||||||||.+||+++|.||+|+++|.+..+.+.+.+++++||+|+..++|+||||||||||++|+++++++
T Consensus         1 mrEii~i~vGQcGnQiG~~~We~~~~EHgi~~~g~~~~~~~~~~~~~~~fF~e~~~~~~vpRavlvDlEp~vid~i~~g~   80 (445)
T 3ryc_B            1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVPRAILVDLEPGTMDSVRSGP   80 (445)
T ss_dssp             CCEEEEEEEHHHHHHHHHHHHHHHHHHTTBCTTSBBCCSCTHHHHTGGGTEEECSTTBEEECEEEEESSSHHHHHHHTST
T ss_pred             CceEEEEecCCcHHHHHHHHHHHHHHHhCCCCCCCccCCccccccchhhccccCCCCccccceeEecCCchhhhhhhccc
Confidence            99999999999999999999999999999999999987777677889999999999999999999999999999999999


Q ss_pred             CCcccCCCceeecccCCCCCCccCcccchhhhHHHHHHHHHHHhhhcCCCCceeEEecCCCCccccchHHHHHHHHhhcC
Q 013161           81 YGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYP  160 (448)
Q Consensus        81 ~~~~~~~~~~~~~~~~~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~s~~GGTGSG~~s~lle~l~deyp  160 (448)
                      ++++|+|+++++|++|+|||||+|||+.|+++.|+++|+||+++|+||.||||+++||+|||||||+|+.|++.|+++||
T Consensus        81 ~~~lf~p~~~i~g~~gAgNN~A~G~yt~G~e~~d~v~d~IRk~~E~cd~lqGf~i~hSlgGGTGSG~gs~lle~L~~ey~  160 (445)
T 3ryc_B           81 FGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYP  160 (445)
T ss_dssp             TGGGSCGGGEEECSSCCTTCHHHHHHSHHHHHHHHHHHHHHHHHHTCSSEEEEEEEEESSSSHHHHHHHHHHHHHHHHCT
T ss_pred             ccceecccceEEccccccCCccccchhhhHHHHHHHHHHHHHHHHcCCccceEEEEeecCCCCCCcHHHHHHHHHHHHcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceeEEEEEecCCCCCCccchhhHHHHHHHHHhhcCCeeEEecChhhhhhhcccccCCCCCccchhHHHHHHhhcCcccc
Q 013161          161 DRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCL  240 (448)
Q Consensus       161 ~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~  240 (448)
                      ++.+++++|+|++..++++++|||++|++++|.+++|+++++||++|+++|.+.+++.+++|.++|++||++++++|.++
T Consensus       161 kk~~~~~sV~Psp~~s~~vvepYNa~Lsl~~L~e~sD~~~~iDNeaL~~ic~~~l~i~~p~y~~lN~lIa~~~s~iT~sl  240 (445)
T 3ryc_B          161 DRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL  240 (445)
T ss_dssp             TSEEEEEEEECCGGGCSCTTHHHHHHHHHHHHHHHCSEEEEEEHHHHHHHHHHTSCCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccceEEEEeCCccccccccchhhhhhHhhhhcccceeEeecchhHHHHHHhccCCCCCcchhhHHHHHhcchhhcccc
Confidence            99999999999987889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCccchhhhhccccccCCccccccccccccccccccccccCHHHHHHhccCCCCcccccCCCCCcceeeecccCCc
Q 013161          241 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGK  320 (448)
Q Consensus       241 r~~~~~~~~~~~l~~~L~P~p~~~fl~~s~~p~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~  320 (448)
                      ||||++|.|+.+|.+||||||++||+.++++|+++.....++++++.+|++++|+++|+|++|+|++|||+|+++++||+
T Consensus       241 Rf~G~lN~Dl~~l~tnLVP~PrlhF~~~s~aP~~s~~~~~~~~~sv~elt~~~f~~~n~m~~~dp~~gky~a~~~~~RG~  320 (445)
T 3ryc_B          241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMMAACDPRHGRYLTVATIFRGR  320 (445)
T ss_dssp             HSCCSSSCSHHHHHHHHCSSTTCCEEEEEEESCCCTTCCCCCCCCHHHHHHHTTSGGGBSSSCCGGGSCEEEEEEEEEES
T ss_pred             ccCcccccCHHHHhhcccCCCceeeeccccCcccccchhhhccCCHHHHHHHHHhhcCCeeecCCCCCcceeeeeeeecC
Confidence            99999999999999999999999999999999998877888999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHhhhccCCcccccccCCCcceeecCCCCCCCCcceEeecCChhhHHHHHHHHHHHHhhcccccccccccC
Q 013161          321 MSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTG  400 (448)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~l~~~~~~m~~kkAflH~Y~~  400 (448)
                      +.++++.+++.+++.|++..|++|+|+++|+++|+++|.++++++++|+|+|+|.+.|+++.+||++||+||||||||++
T Consensus       321 v~~kdv~~~i~~ik~k~~~~Fv~W~p~~~k~~i~~~pp~~~~~s~~~lsNsTaI~~~~~rl~~kFd~m~~krAFvHwY~~  400 (445)
T 3ryc_B          321 MSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSSTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTG  400 (445)
T ss_dssp             CCHHHHHHHHHHHHHHTGGGBCTTSTTCEEEEEESSCCTTCSEEEEEEEEEGGGHHHHHHHHHHHHHHHTTTTTTHHHHT
T ss_pred             CChHHHHHHHHHHHhhCcccCcccCCCceeeeeeccCCcccceeeeeecCcHHHHHHHHHHHHHHHhhhhcccchhhhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCChhhHHHHHHHHHHHHHHHHHHHhcccccCCCCccccccc
Q 013161          401 EGMDEMEFTEAESNMNDLVSEYQQYQDATADEEGEYEDEEEGE  443 (448)
Q Consensus       401 ~Gmee~eF~ea~~~l~~l~~~Y~~~~~~~~~~~~~~~~~~~~~  443 (448)
                      |||||+||.||+++|++|+++|+++++...|++++ .+++++|
T Consensus       401 eGmee~eF~EA~e~l~~L~~eY~~~~~~~~~~~~~-~~~~~~~  442 (445)
T 3ryc_B          401 EGMDEMEFTEAESNMNDLVSEYQQYQDATADEQGE-FEEEEGE  442 (445)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHHHHHHCCTTC-----------
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHHHHhccCCcccc-ccchhhh
Confidence            99999999999999999999999998877655433 3344443
>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3ut5_A* 4eb6_A* 4f61_A* 4f6r_A* 3hke_A* 3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A* 3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* ... Back     alignment and structure
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule, nucleation, GTPase, lateral interaction, structural protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB: 1z5v_A* 1z5w_A* Back     alignment and structure
>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex, bacterial tubulin, cytoskeleton, polymerization, verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter dejongeii} Back     alignment and structure
>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton, protein COM cytoskeletal protein; HET: GTP; 2.5A {Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB: 2btq_A* Back     alignment and structure
>1w5f_A Cell division protein FTSZ; complete proteome, GTP-binding, multigene family, septation, tubulin, filament, Z-ring, GTPase, domain swapped; HET: G2P; 2.0A {Thermotoga maritima} SCOP: c.32.1.1 d.79.2.1 Back     alignment and structure
>2vap_A FTSZ, cell division protein FTSZ homolog 1; polymerization, tubulin homolog, GTPase, septation, cell cycle, GTP-binding; HET: GDP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.32.1.1 d.79.2.1 PDB: 1w59_A 1w58_1* 1w5a_A* 1w5b_A* 1fsz_A* 1w5e_A* Back     alignment and structure
>1ofu_A FTSZ, cell division protein FTSZ; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.32.1.1 d.79.2.1 Back     alignment and structure
>2vaw_A FTSZ, cell division protein FTSZ; bacterial cell division protein, tubulin homolog, nucleotide-binding, GTPase, septation, cytoplasm; HET: GDP; 2.90A {Pseudomonas aeruginosa} SCOP: c.32.1.1 d.79.2.1 Back     alignment and structure
>2r75_1 Cell division protein FTSZ; GTPase, tubulin-like, inhibitor, cell cycle; HET: 01G; 1.40A {Aquifex aeolicus} PDB: 2r6r_1* Back     alignment and structure
>1rq2_A Cell division protein FTSZ; cell cycle, tubulin, GTPase, signaling protein; HET: CIT; 1.86A {Mycobacterium tuberculosis} SCOP: c.32.1.1 d.79.2.1 PDB: 1rlu_A* 1rq7_A* 2q1y_A* 2q1x_A* Back     alignment and structure
>2vxy_A FTSZ, cell division protein FTSZ; GTP-binding, nucleotide-binding, septation, cytoplasm, B.subtilis, cell cycle; HET: CIT; 1.7A {Bacillus subtilis} PDB: 2vam_A* 2rhj_A* 2rhh_A* 2rhl_A* 2rho_A* Back     alignment and structure
>3m89_A FTSZ/tubulin-related protein; partition, TUBZ, GTP-binding, nucleotide-BIND structural protein; HET: GSP; 2.00A {Bacillus thuringiensis} PDB: 3m8k_A 2xka_A* 2xkb_A* Back     alignment and structure
>3v3t_A Cell division GTPase FTSZ, diverged; TUBZ, tubulin/FTSZ related, rossmann fold, GTP bindi structural protein; 2.30A {Clostridium botulinum C} Back     alignment and structure
>4dxd_A Cell division protein FTSZ; rossmann fold, GTPase, GTP binding, cell cycle-inhibitor COM; HET: GDP 9PC; 2.01A {Staphylococcus aureus} PDB: 3vo8_A* Back     alignment and structure
>4ei7_A Plasmid replication protein REPX; GTP hydrolase, plasmid segregation; HET: GDP; 1.90A {Bacillus cereus} PDB: 4ei8_A 4ei9_A* Back     alignment and structure
>3r4v_A Putative uncharacterized protein; tubulin, unknown function; HET: GDP; 1.67A {Pseudomonas phage 201phi2-1} PDB: 3rb8_A* Back     alignment and structure
>2e4h_B Tubulin alpha-ubiquitous chain; cytoskeleton, CAP-Gly, complex structure, solution structure, CLIP, structural protein; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 448
d1tubb1243 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus 1e-137
d1tuba1245 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus 1e-125
d2btoa1244 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthec 1e-119
d1tubb2184 d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Su 5e-98
d1tuba2195 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (S 3e-91
d2btoa2180 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosth 3e-85
d1ofua1198 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Ps 8e-07
d2vapa1209 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Ar 2e-05
d1rq2a1198 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Myc 0.001
>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 243 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Tubulin beta-subunit
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  390 bits (1004), Expect = e-137
 Identities = 206/243 (84%), Positives = 228/243 (93%)

Query: 1   MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFV 60
           MREI+H+Q GQCGNQIG+KFWEV+ DEHGIDPTG Y G SDLQLER+NVYYNEA+  ++V
Sbjct: 1   MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
           PRA+L+DLEPGTMDSVR+GP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+D+VLDVV
Sbjct: 61  PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120

Query: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
           RKE+E+CDCLQGFQ+ HSLGGGTGSGMGTLLISKIREEYPDR+M TFSV PSPKVSDTVV
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV 180

Query: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCL 240
           EPYNATLSVHQLVEN DE   +DNEALYDICFRTLKLTTP++GDLNHL+SATMSGVT CL
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240

Query: 241 RFP 243
           RFP
Sbjct: 241 RFP 243
>d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 245 Back     information, alignment and structure
>d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Length = 244 Back     information, alignment and structure
>d1tubb2 d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 184 Back     information, alignment and structure
>d1tuba2 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 195 Back     information, alignment and structure
>d2btoa2 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Length = 180 Back     information, alignment and structure
>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]} Length = 198 Back     information, alignment and structure
>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 209 Back     information, alignment and structure
>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Mycobacterium tuberculosis [TaxId: 1773]} Length = 198 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query448
d1tubb1243 Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 982 100.0
d1tuba1245 Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 98 100.0
d2btoa1244 Tubulin alpha-subunit {Prosthecobacter dejongeii [ 100.0
d1tubb2184 Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 982 100.0
d1tuba2195 Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 98 100.0
d2btoa2180 Tubulin alpha-subunit {Prosthecobacter dejongeii [ 100.0
d1w5fa1194 Cell-division protein FtsZ {Thermotoga maritima [T 99.72
d1ofua1198 Cell-division protein FtsZ {Pseudomonas aeruginosa 99.72
d1rq2a1198 Cell-division protein FtsZ {Mycobacterium tubercul 99.7
d2vapa1209 Cell-division protein FtsZ {Archaeon Methanococcus 99.7
>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Tubulin beta-subunit
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=1.8e-75  Score=553.52  Aligned_cols=243  Identities=85%  Similarity=1.401  Sum_probs=237.2

Q ss_pred             CEeEEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCcCCccccccccccccccCCCCCCccceeecCCCCCccccccccC
Q 013161            1 MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGP   80 (448)
Q Consensus         1 M~EIitiq~Gq~gnqIG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~~~~~~   80 (448)
                      |||||+||+||||||||.+||+++++||+++++|....+.+....+.++||+|+..++|+||||+||+||++|+++++++
T Consensus         1 MrEiI~iqvGQcGnQIG~~fw~~~~~Eh~i~~~g~~~~~~~~~~~~~~~~f~e~~~~~~~pRav~iD~Ep~vi~~i~~~~   80 (243)
T d1tubb1           1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYVPRAILVDLEPGTMDSVRSGP   80 (243)
T ss_dssp             CCEEEEEECHHHHHHHHHHHGGGTTTSCCSSCCCSSSSCCCCSSCCSSCCSSTTTTSTTCCCCEECCSSSHHHHHHSSSS
T ss_pred             CCcEEEEeccChHHHHHHHHHHHHHHHcCCCCCCCCCCCcccchhccccccccCCCCccccceeEecCCcchhhhhccCc
Confidence            99999999999999999999999999999999998877777677788999999999999999999999999999999999


Q ss_pred             CCcccCCCceeecccCCCCCCccCcccchhhhHHHHHHHHHHHhhhcCCCCceeEEecCCCCccccchHHHHHHHHhhcC
Q 013161           81 YGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYP  160 (448)
Q Consensus        81 ~~~~~~~~~~~~~~~~~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~s~~GGTGSG~~s~lle~l~deyp  160 (448)
                      ++++|++++++.+++|+|||||+||+..|+++.|+++|+|||++|+||++|||+++||++||||||+|++|+|.|+|+||
T Consensus        81 ~~~~f~~~~~i~~~~gagNNwA~Gy~~~G~~~~d~i~d~iRk~~E~cD~l~gf~~~hSl~GGTGSGlGs~l~e~L~d~yp  160 (243)
T d1tubb1          81 FGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYP  160 (243)
T ss_dssp             SCCCCSSSCCCCTTCCCCSSTHHHHTSHHHHHHHHHHHHHHHHHHSSSCEEEEEEECCTTCSTTTTTHHHHHHHHHHHCS
T ss_pred             cccccCccceEEcccCcccceeeeeeccCHHHHHHHHHHHHHHHHhCCCcCceEEEeeccCccccchHHHHHHHHhhhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceeEEEEEecCCCCCCccchhhHHHHHHHHHhhcCCeeEEecChhhhhhhcccccCCCCCccchhHHHHHHhhcCcccc
Q 013161          161 DRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCL  240 (448)
Q Consensus       161 ~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~  240 (448)
                      ++.+++++|+|++..+++++||||++|+|++|.+++|+++++||++|+++|.+.++++.++|+++|++||+.|+++|+++
T Consensus       161 ~~~~~~~~V~P~~~~~~vvvqpYNtvLsl~~L~~~ad~v~~~dN~al~~i~~~~~~~~~~s~~~~N~~Ia~~ls~~T~s~  240 (243)
T d1tubb1         161 DRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL  240 (243)
T ss_dssp             SSCEEECCCCCCTTCSCSSTTHHHHHHHHHHHSSSEEEECCCCHHHHHHHTTTTSCCSSCCHHHHHHHHHHHHHHHHTBT
T ss_pred             cceEEEEeecCCcccCcccccchHHHHhHHHHHhhCCeEEEeeHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhcc
Confidence            99999999999977899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCC
Q 013161          241 RFP  243 (448)
Q Consensus       241 r~~  243 (448)
                      |||
T Consensus       241 RFP  243 (243)
T d1tubb1         241 RFP  243 (243)
T ss_dssp             TBS
T ss_pred             cCC
Confidence            998
>d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Back     information, alignment and structure
>d1tubb2 d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1tuba2 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2btoa2 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Back     information, alignment and structure
>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure