Citrus Sinensis ID: 013166

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------45
Protein Sequence
MNSVFSADDFSDSFLSSPSPPPASFHALPMNRSQSEWELEKFLQEVTVSPRAISSSSASDNSVPAVIGPSVMSKSRAYEIGDDDVVEIKKSHRDQSLDPPVIPSSTAPVDSDEYRAYLKTKLDLACAAVALRTAPVKPEDKSSLIENQTQAAKPSELGSQAMATVNVSTAHDALGTHPKADFRPLGSADLPAVQARPAAQVRQSTSGSSREDSDDDELEGDTETIEGLDSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGLNPLLLARSDVPGVGMPLVNVPLDASRNATHPMQPNPNQFFHQAIPSISTPTPNHQSLDSSFPSNIQLPTVGNPQSDRGGKNMTETSPLQHAVGLEHVPQGVGHRVSPPGAVPGWDTGLPHAGSKNNKQR
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEHccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccEEEEEccccccccccccccccccccccccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mnsvfsaddfsdsflsspspppasfhalpmnrsqSEWELEKFLQEvtvspraissssasdnsvpavigpsvmsksrayeigddDVVEIKkshrdqsldppvipsstapvdsdEYRAYLKTKLDLACAAVAlrtapvkpedksslienqtqaakpselgsqAMATVNVSTahdalgthpkadfrplgsadlpavqarpaaqvrqstsgssredsdddelegdtetiegldsVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTglnplllarsdvpgvgmplvnvpldasrnathpmqpnpnqffhqaipsistptpnhqsldssfpsniqlptvgnpqsdrggknmtetsplqhavglehvpqgvghrvsppgavpgwdtglphagsknnkqr
Flexible Loop (DISEMBL)
mnsvfsaddfsdsflsSPSPPPASFHALPMNRSQSEWELEKFLQEVTVSPraissssasdnsvpavigpsvmsksrAYEIGDDDVVEIKKshrdqsldppvipsstapvdsDEYRAYLKTKLDLACAAVALRtapvkpedksslIENQTQAAKPSELGSQAMATVNVSTAHDALGTHPKADFRPLGSADLPAVqarpaaqvrqstsgssredsdddelegdtetiegldsvddkrarrmlsnresarrsrrrkqAHLNEletqagqlraEHSSLLKGLTDvnqkydesavnnrilkadIETLRAKVKMAEEtvkrvtglnplllarsdvpgvGMPLVNVPLDASRNATHPMQPNPNQFFHQAIPSISTPTPNHQSLDSSFPSNIQLPTVGNPQSDRGGKNMTETSPLQHAVGLEHVPQGVGHRVSPPGAVPgwdtglphagsknnkqr
Low Complexity Region (SEG)
MNSVfsaddfsdsflsspspppasfhalpMNRSQSEWELEKFLQEVTvspraissssasdnsvpavIGPSVMSKSRAYEIGDDDVVEIKKSHRDQSLDPPVIPSSTAPVDSDEYRAYLKTKLDLACAAVALRTAPVKPEDKSSLIENQTQAAKPSELGSQAMATVNVSTAHDALGTHPKADFRPLGSADLpavqarpaaqvrqstsgssredsdddelegdtetiegLDSVDDKRARRMLsnresarrsrrrKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGLNPLLLARSDVPGVGMPLVNVPLDASRNATHPMQPNPNQFFHQAIPSISTPTPNHQSLDSSFPSNIQLPTVGNPQSDRGGKNMTETSPLQHAVGLEHVPQGVGHRVSPPGAVPGWDTGLPHAGSKNNKQR
Disordered region (IsUnstruct)
*****************************************************************************************************************YRAYLKTKLDLACAAVALRT*******************************************************************************************************************************************************YDESAVNNRILKADIETLRAKVKMAEETVKRVTGLNPLLLARSDVPGVGMPLVNV*************************************************************************************************************
Disordered Region (DISOPRED)
**SVFSADDFSDSF*******************************************************************************************************************************************************************************************************************************************RRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR*************************************************************************************************************************************************
Disordered Region (DISEMBL)
*******************PPPASFHALPMNRSQSEWELEKFLQEVTV***************PAVIGPSVMSKSRAYEIGDDDVVEIKKSHRDQSLDPPVIPSSTAPVDSDEYRAYLKTKLDLACAAVALRTAPVKPEDKSSLIENQTQAAKPSELGSQAMATVNVSTAHDALGTHPKADFRPLGSADLPA******************************ETIEGLDSVDDKRARRM***************AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGLNPLLLARSDVPGVGMPLVNVPLDASRNATHPMQPNPNQFFHQAIPSIST*********SSFPSNIQLPTVGNPQSDRGGKNMTETSPLQHAVGLEHVPQGVGHRVSPPGAVPGWDTGLPH*********
Disordered Region (DISPRO)
**SVFSADDFSDSFLS*******************EWELEKFLQEVTV*********************************************************TAPVDSDEYRAYLKTKLDLACAAVALRTAP*****************************************************D*****************************************************************AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGLNPLLLARSDVPGVG**LVNVPLDASRNATHPMQPNPNQFFHQAIPSISTPTPNHQSLDSSFPSNIQLPTVG*****************Q*********QGVGHRVSPPGAVPGWDTGLPH*********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNSVFSADDFSDSFLSSPSPPPASFHALPMNRSQSEWELEKFLQEVTVSPRAISSSSASDNSVPAVIGPSVMSKSRAYEIGDDDVVEIKKSHRDQSLDPPVIPSSTAPVDSDEYRAYLKTKLDLACAAVALRTAPVKPEDKSSLIENQTQAAKPSELGSQAMATVNVSTAHDALGTHPKADFRPLGSADLPAVQARPAAQVRQSTSGSSREDSDDDELEGDTETIEGLDSVDDKRARRMLSNxxxxxxxxxxxxxxxxxxxxxxxxxxxxHSSLLKGLTDVNQKYDESAVNxxxxxxxxxxxxxxxxxxxxxxxxxxxxNPLLLARSDVPGVGMPLVNVPLDASRNATHPMQPNPNQFFHQAIPSISTPTPNHQSLDSSFPSNIQLPTVGNPQSDRGGKNMTETSPLQHAVGLEHVPQGVGHRVSPPGAVPGWDTGLPHAGSKNNKQR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	448	2.2.26 [Sep-21-2011]
Q99090	401	Light-inducible protein C	N/A	no	0.852	0.952	0.444	1e-62
O22763	411	Basic leucine zipper 10 O	yes	no	0.863	0.941	0.411	5e-54
Q9M1G6	403	Basic leucine zipper 25 O	no	no	0.738	0.821	0.444	3e-47
B9DGI8	314	Basic leucine zipper 63 O	no	no	0.486	0.694	0.440	2e-40
Q9FUD3	277	Basic leucine zipper 9 OS	no	no	0.305	0.494	0.482	2e-25
P12959	453	Regulatory protein opaque	N/A	no	0.223	0.220	0.544	7e-24
P23922	349	Transcription factor HBP-	N/A	no	0.165	0.212	0.459	4e-08
Q9SJN0	442	Protein ABSCISIC ACID-INS	no	no	0.167	0.169	0.412	7e-07
P24068	151	Ocs element-binding facto	N/A	no	0.207	0.615	0.339	1e-06
P42777	270	G-box-binding factor 4 OS	no	no	0.125	0.207	0.482	4e-06

>sp|Q99090|CPRF2_PETCR Light-inducible protein CPRF2 OS=Petroselinum crispum GN=CPRF2 PE=2 SV=2

 Score =  241 bits (614), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 193/434 (44%), Positives = 259/434 (59%), Gaps = 52/434 (11%)

Query: 1   MNSVFSADDFSDSFLSSPSPPPASFHALPMNRSQSEWELEKFLQEVTVSPRAISSSSASD 60
           M+ VFS +D SD F S P+   +S   L MNRS SEW  + FLQ+          +SA +
Sbjct: 1   MDRVFSVEDISDQFWSPPAREDSS--KLVMNRSDSEWAFQSFLQQ----------ASALE 48

Query: 61  NSVPAVIGPSVMSKSRAYEIGDDDVVEIKKSHRDQSLDPPVIPSSTAPVDSDEYRAYLKT 120
           +S P    P  ++       GD     +K        +P  IP++  PVDS++Y+AYLK+
Sbjct: 49  SSQPLPSDPVPVA-------GD-----VK--------NPVEIPANV-PVDSEDYQAYLKS 87

Query: 121 KLDLACAAVAL-RTAPVKPEDKSSLIENQTQAAKPSELGSQAMATVNVSTAHDALGTHPK 179
           +LDLACAAVAL R + +KP+D ++L++N +QA+  S+L SQ        + HD      K
Sbjct: 88  RLDLACAAVALTRASSLKPQDSAALLDNGSQASNTSQLVSQVPPK---GSGHDLSKEEDK 144

Query: 180 ADFRPLGSADLPAVQARPAAQVRQSTSGSSREDSDDD-ELEGDTETIEGLDSVDDKRARR 238
                  +  LPA+Q + A QV+ +TSGSSR+ SDDD ELEG+TET    D  D KR RR
Sbjct: 145 EALAATATPLLPALQKKSAIQVKSTTSGSSRDHSDDDDELEGETETTRNGDPSDAKRVRR 204

Query: 239 MLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKAD 298
           MLSNRESARRSRRRKQAH+ ELETQ  QLR E+SSLLK LTD++Q+Y+++AV+NR+LKAD
Sbjct: 205 MLSNRESARRSRRRKQAHMTELETQVSQLRVENSSLLKRLTDISQRYNDAAVDNRVLKAD 264

Query: 299 IETLRAKVKMAEETVKRVTGLNPLLLAR-SDVPGVGM-PLVNVPLDASRNATHPMQPNPN 356
           IET+RAKVKMAEETVKRVTGLNP+  +  S++  +GM      P D S + T   Q    
Sbjct: 265 IETMRAKVKMAEETVKRVTGLNPMFQSMSSEISTIGMQSFSGSPSDTSADTT---QDGSK 321

Query: 357 QFFHQAIPSISTPTPNHQSLDSSFPSNIQLPTVGNPQSDRG-----GKNMTETSPLQHAV 411
           Q F+Q  P+   P  + Q + +     +Q+P V N Q         G  M  TS +Q   
Sbjct: 322 QHFYQPAPTSHMPAQD-QKIQNGL---LQVPPVDNLQQHSASGPVEGNKMERTSSMQRVA 377

Query: 412 GLEHVPQGVGHRVS 425
            LEH+ + +   VS
Sbjct: 378 SLEHLQKRIRGGVS 391

Binds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Petroselinum crispum (taxid: 4043)

>sp|O22763|BZP10_ARATH Basic leucine zipper 10 OS=Arabidopsis thaliana GN=BZIP10 PE=1 SV=2

 Score =  212 bits (539), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 183/445 (41%), Positives = 238/445 (53%), Gaps = 58/445 (13%)

Query: 1   MNSVFSADDFSDSFLSSPSPP--PAS---FHALPMNRSQSEWELEKFLQEVTVSPRAISS 55
           MNS+FS DDFSD F  +P  P  P S     A  +++SQ EW  E FL+E++ S  A+SS
Sbjct: 1   MNSIFSIDDFSDPFWETPPIPLNPDSSKPVTADEVSQSQPEWTFEMFLEEISSS--AVSS 58

Query: 56  SSASDNSVPAVIG----PSVMSKSRAYEIGDDDVVEIKKSHRDQSLDPPVIPSSTAPVDS 111
               +N+  A++G     S+ S S   +  DD     + S       P  + + T  VDS
Sbjct: 59  EPLGNNN-NAIVGVSSAQSLPSVSGQNDFEDDSRFRDRDSGNLDCAAP--MTTKTVIVDS 115

Query: 112 DEYRAYLKTKLDLACA-AVALRTAPVKPEDKSSLIENQTQAAKPSELGSQAMATVNVSTA 170
           D+YR  LK KL+  CA  V+LR   VKPED +S  E Q Q  + S L             
Sbjct: 116 DDYRRVLKNKLETECATVVSLRVGSVKPEDSTSSPETQLQPVQSSPL------------T 163

Query: 171 HDALGTHPKADFRPLGSADLPAVQARPAAQVRQSTSGSSREDSDDDELEGDTETIEGLDS 230
              LG           ++ LPA   +    ++Q TSGSSRE SDD++L+ + ET   L  
Sbjct: 164 QGELGV----------TSSLPAEVKKTGVSMKQVTSGSSREYSDDEDLDEENETTGSLKP 213

Query: 231 VDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAV 290
            D K++RRMLSNRESARRSRRRKQ   ++LETQ   L+ EHSSLLK L+++N KYDE+AV
Sbjct: 214 EDVKKSRRMLSNRESARRSRRRKQEQTSDLETQVNDLKGEHSSLLKQLSNMNHKYDEAAV 273

Query: 291 NNRILKADIETLRAKVKMAEETVKRVTGLNPLLLARSDVPGVGMPLVNVPLDASRNATHP 350
            NRILKADIETLRAKVKMAEETVKRVTG+NP+LL RS                + N   P
Sbjct: 274 GNRILKADIETLRAKVKMAEETVKRVTGMNPMLLGRSS-------------GHNNNNRMP 320

Query: 351 MQPNPNQFFHQAIPSISTPTPNHQSLDSSFPSNIQLPTVGNPQSDRGGKNMTETSPLQHA 410
           +  N        IP+       H +L+     NI +PT+  P   R G N     P Q +
Sbjct: 321 ITGNNRMDSSSIIPAYQP----HSNLNHMSNQNIGIPTILPP---RLGNNFA-APPSQTS 372

Query: 411 VGLEHVPQGVGHRVSPPGAVPGWDT 435
             L+ +  G  H V+P     GW+T
Sbjct: 373 SPLQRIRNGQNHHVTPSANPYGWNT 397

Transcription factor that binds to the C-box-like motif (5'-TGCTGACGTCA-3') and G-box-like motif (5'-CCACGTGGCC-3'), ABRE elements, of gene promoters. Binds to the 5'-ACGT-3' motif of seed storage protein (SSP) encoding gene promoters (e.g. At2S and CRU3) and promotes their expression in seeds when in complex with ABI3 and BZIP53. Involved in the defense responses to the biotrophic pathogen Hyaloperonospora parasitica and oxidative stress responses; mediates positively cell death.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M1G6|BZP25_ARATH Basic leucine zipper 25 OS=Arabidopsis thaliana GN=BZIP25 PE=1 SV=1

 Score =  189 bits (481), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 175/394 (44%), Positives = 223/394 (56%), Gaps = 63/394 (15%)

Query: 1   MNSVFSADDFSDSFLSSPSPPPASFH----------ALPMNRSQSEWELEKFLQEVTVSP 50
           M+ VFS DD ++SF   P+P P+             A  M RSQSEW   + + E++ S 
Sbjct: 1   MHIVFSVDDLTESFWPVPAPAPSPGSSSTPSPTQNVADGMTRSQSEWAFHRLINELSGS- 59

Query: 51  RAISSSSASDNSVPAVIGPSVMSKSRAYEIGDD--DVVEIKK--SHRDQSLDP------- 99
                SS + N++     P V S SR  E  D+  DVVEI+K  +HR   +D        
Sbjct: 60  ----DSSPTTNTIERS-PPPVQSLSRLEETVDETEDVVEIQKPQNHRRLPVDDQGKNRNR 114

Query: 100 -----PVIPSSTAPVDSDEYRAYLKTKLDLACAAVALRTAPVKPEDKSSLIENQTQAAKP 154
                PV  S+   VD ++Y A LK+KL+LACAAVA R   VKPED S+   NQ      
Sbjct: 115 APSSDPVDSSAPVVVDPNQYHAILKSKLELACAAVARRVGTVKPEDSSASASNQ------ 168

Query: 155 SELGSQAMATVNVSTAHDALGTHPKADFRPLGSADLPAVQARPAAQVRQSTSGSSREDSD 214
                QA  ++   T+  A        F P  S      Q +P    RQ TS SSR+DSD
Sbjct: 169 ----KQAQGSIVAQTSPGASSVR----FSPTTS-----TQKKPDVPARQ-TSISSRDDSD 214

Query: 215 DDELEGDTETIEGLDSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSL 274
           DD+L+GD +  +  D    KRARRMLSNRESARRSRRRKQ  +NE +TQ GQLRAEHS+L
Sbjct: 215 DDDLDGDADNGDPTDV---KRARRMLSNRESARRSRRRKQEQMNEFDTQVGQLRAEHSTL 271

Query: 275 LKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGLNPLLLARSDVPGVGM 334
           +  L+D+N KYD +AV+NRIL+ADIETLR KVKMAEETVKRVTG+NPL  +R   P +G+
Sbjct: 272 INRLSDMNHKYDAAAVDNRILRADIETLRTKVKMAEETVKRVTGVNPLHWSR---PNMGI 328

Query: 335 PLVNVPLDASRNATHPMQPNPNQFFHQAIPSIST 368
           P  N P     +A+  + PN N     A  S +T
Sbjct: 329 PFSNTP-----SASSSIPPNSNHILKPANSSTNT 357

Transcription factor that binds to the 5'-ACGT-3' box, especially present in G-box-like motif (5'-CCACGTGGCC-3'), ABRE elements, of seed storage protein (SSP) encoding gene promoters (e.g. At2S and CRU3) and promotes their expression in seeds when in complex with ABI3 and BZIP53.

Arabidopsis thaliana (taxid: 3702)

>sp|B9DGI8|BZP63_ARATH Basic leucine zipper 63 OS=Arabidopsis thaliana GN=BZIP63 PE=1 SV=1

 Score =  167 bits (422), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 130/295 (44%), Positives = 165/295 (55%), Gaps = 77/295 (26%)

Query: 30  MNRSQSEWELEKFLQEVTVSPRAISSSSASDNSVPAVIGPSVMSKSRAYEIGDDDVVEIK 89
           +NRS SEW   +F+QE        SS++A D       G SV S                
Sbjct: 24  LNRSASEWAFNRFIQE--------SSAAADDGESTTACGVSVSS---------------- 59

Query: 90  KSHRDQSLDPPVIPSSTAPVDSDEYRAYLKTKLDLACAAVAL-RTAPVKPEDKSSLIENQ 148
                    PP +P     VDS+EYRA+LK+KL+LACAAVA+ R   +KP+D S   +N 
Sbjct: 60  ---------PPNVP-----VDSEEYRAFLKSKLNLACAAVAMKRGTFIKPQDTSGRSDNG 105

Query: 149 TQAAKPSELGSQAMATVNVSTAHDALGTHPKADFRPLGSADLPAVQARPAAQVRQSTSGS 208
              A  SE  S A +                    P+ S+ +              TSGS
Sbjct: 106 --GANESEQASLASSKAT-----------------PMMSSAI--------------TSGS 132

Query: 209 SREDSDDDELEGDTETIEGLDSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLR 268
             E S D+E E D ET   ++  + KR +RMLSNRESARRSRRRKQAHL+ELETQ  QLR
Sbjct: 133 --ELSGDEE-EADGET--NMNPTNVKRVKRMLSNRESARRSRRRKQAHLSELETQVSQLR 187

Query: 269 AEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGLNPLL 323
            E+S L+KGLTDV Q +++++V NR+LKA+IETLRAKVKMAEETVKR+TG NP+ 
Sbjct: 188 VENSKLMKGLTDVTQTFNDASVENRVLKANIETLRAKVKMAEETVKRLTGFNPMF 242

Transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FUD3|BZIP9_ARATH Basic leucine zipper 9 OS=Arabidopsis thaliana GN=BZIP9 PE=1 SV=1

 Score =  117 bits (293), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/143 (48%), Positives = 95/143 (66%), Gaps = 6/143 (4%)

Query: 187 SADLPAVQARPAAQ--VRQSTSGSSREDSDDDELEGDTETIEGLDSVDD-KRARRMLSNR 243
           SAD P    +P  +  VR++TSGSS  +SDD++ E +    E  +  +D KR RRM SNR
Sbjct: 72  SADSPVSANKPEVRGGVRRTTSGSSHVNSDDEDAETEAGQSEMTNDPNDLKRIRRMNSNR 131

Query: 244 ESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303
           ESA+RSRRRKQ +L +LETQ   L+ ++S+L K L D  Q++  +  NNR+LK+D+ETLR
Sbjct: 132 ESAKRSRRRKQEYLVDLETQVDSLKGDNSTLYKQLIDATQQFRSAGTNNRVLKSDVETLR 191

Query: 304 AKVKMAEETVKR---VTGLNPLL 323
            KVK+AE+ V R    + LN LL
Sbjct: 192 VKVKLAEDLVARGSLTSSLNQLL 214

Transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|P12959|OP2_MAIZE Regulatory protein opaque-2 OS=Zea mays GN=O2 PE=1 SV=1

 Score =  112 bits (279), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 55/101 (54%), Positives = 78/101 (77%), Gaps = 1/101 (0%)

Query: 216 DELEGDTETIEGLDSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLL 275
           ++++G+ E I G     ++R R+  SNRESARRSR RK AHL ELE Q  QL+AE+S LL
Sbjct: 210 EDMDGEVE-ILGFKMPTEERVRKKESNRESARRSRYRKAAHLKELEDQVAQLKAENSCLL 268

Query: 276 KGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRV 316
           + +  +NQKY+++ V+NR+L+AD+ETLRAKVKM E+++KRV
Sbjct: 269 RRIAALNQKYNDANVDNRVLRADMETLRAKVKMGEDSLKRV 309

Involved in the regulation of the endosperm-specific production of albumin b-32 and other zein proteins. It is a trans-acting transcriptional activator that binds to the consensus sequence 5'-GATGAYRTGR-3'.

Zea mays (taxid: 4577)

>sp|P23922|HBP1A_WHEAT Transcription factor HBP-1a OS=Triticum aestivum PE=2 SV=1

 Score = 59.7 bits (143), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/74 (45%), Positives = 46/74 (62%)

Query: 226 EGLDSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKY 285
           E  D  + K+ +R LSNRESARRSR RKQA   EL  +A  L++E+SSL   L  + ++Y
Sbjct: 246 EQWDERELKKQKRKLSNRESARRSRLRKQAECEELGQRAEALKSENSSLRIELDRIKKEY 305

Query: 286 DESAVNNRILKADI 299
           +E    N  LKA +
Sbjct: 306 EELLSKNTSLKAKL 319

Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.

Triticum aestivum (taxid: 4565)

>sp|Q9SJN0|ABI5_ARATH Protein ABSCISIC ACID-INSENSITIVE 5 OS=Arabidopsis thaliana GN=ABI5 PE=1 SV=1

 Score = 55.8 bits (133), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 48/80 (60%), Gaps = 5/80 (6%)

Query: 214 DDDELEGDTETIEG-LDSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHS 272
           D   L G    ++G ++ V ++R RRM+ NRESA RSR RKQA+  ELE +  QL+ E++
Sbjct: 336 DMGGLRGRKRVVDGPVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENA 395

Query: 273 SLLKGLTDV----NQKYDES 288
            L   L ++     Q+Y ES
Sbjct: 396 QLKHALAELERKRKQQYFES 415

Participates in ABA-regulated gene expression during seed development and subsequent vegetative stage by acting as the major mediator of ABA repression of growth. Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter and to the ABRE of the Em1 and Em6 genes promoters. Can also trans-activate its own promoter, suggesting that it is autoregulated. Plays a role in sugar-mediated senescence.

Arabidopsis thaliana (taxid: 3702)

>sp|P24068|OCS1_MAIZE Ocs element-binding factor 1 OS=Zea mays GN=OBF1 PE=2 SV=2

 Score = 54.7 bits (130), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 54/103 (52%), Gaps = 10/103 (9%)

Query: 234 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNR 293
           +R +R LSNRESARRSR RKQ HL+EL  +  +L+A+++ +     D+  +Y      N 
Sbjct: 26  RREKRRLSNRESARRSRLRKQQHLDELVQEVARLQADNARVAARARDIASQYTRVEQENT 85

Query: 294 ILKADIETLRAKVKMAEETVKRVTGLNPLLLARSDVPGVGMPL 336
           +L+A           A E   R+  +N +L    +  GV M +
Sbjct: 86  VLRA----------RAAELGDRLRSVNEVLRLVEEFSGVAMDI 118

May contribute to developmentally specific patterns of gene expression. Binds specifically to ocs elements which are transcriptional enhancer found in the promoters of several plant genes. OCSBF-1 is able to bind to a site within each half of the ocs element as well as to animal AP-1 and CREB sites.

Zea mays (taxid: 4577)

>sp|P42777|GBF4_ARATH G-box-binding factor 4 OS=Arabidopsis thaliana GN=GBF4 PE=1 SV=1

 Score = 53.1 bits (126), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/56 (48%), Positives = 37/56 (66%)

Query: 225 IEGLDSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTD 280
           +E +D    +R +RM+ NRESA RSR RKQA+  ELET A +L  E+  LLK + +
Sbjct: 180 MEAMDKAAAQRQKRMIKNRESAARSRERKQAYQVELETLAAKLEEENEQLLKEIEE 235

Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	448
255559911	441	DNA binding protein, putative [Ricinus c	0.946	0.961	0.475	2e-84
118486477	445	unknown [Populus trichocarpa]	0.959	0.966	0.514	2e-83
444300790	444	bZIP transcription factor family protein	0.886	0.894	0.438	1e-71
225451342	423	PREDICTED: light-inducible protein CPRF2	0.870	0.921	0.459	2e-71
16797791	450	bZIP transcription factor [Nicotiana tab	0.899	0.895	0.438	3e-71
147796457	446	hypothetical protein VITISV_022136 [Viti	0.899	0.903	0.448	3e-69
351720703	417	bZIP protein [Glycine max] gi|183014149|	0.897	0.964	0.435	5e-69
351725229	404	bZIP transcription factor bZIP89 [Glycin	0.879	0.975	0.438	1e-68
225437201	452	PREDICTED: light-inducible protein CPRF2	0.941	0.933	0.436	2e-68
298204854	383	unnamed protein product [Vitis vinifera]	0.683	0.798	0.504	2e-66

>gi|255559911|ref|XP_002520974.1| DNA binding protein, putative [Ricinus communis] gi|223539811|gb|EEF41391.1| DNA binding protein, putative [Ricinus communis]

 Score =  319 bits (817), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 221/465 (47%), Positives = 281/465 (60%), Gaps = 41/465 (8%)

Query: 1   MNSVFSADDFSDSFLSSPSPPPASFHALPMNRSQSEWELEKFLQEVTVSPRAISSSSASD 60
           MNS+FS DDFSD    +P           M RS SEWELEKFL+E    P + S    ++
Sbjct: 1   MNSIFSVDDFSDLLWQAP-----------MTRSASEWELEKFLEEF---PASSSICDNNN 46

Query: 61  NSVPAVIGPSVMSKSRAYEIGDDDVVEIKKSH-RDQSLDPPVIPSSTAPVDSDEYRAYLK 119
           N    V  P  ++ S+  EI +D+VVEI+K     Q LD   +P    P D+D Y A+LK
Sbjct: 47  NDTTTVAVPKSLTSSKRREICEDEVVEIEKVEINSQPLDRAPLP---PPEDTDGYHAFLK 103

Query: 120 TKLDLACAAVAL---RTAPVKPED-KSSLIENQTQAAKPSELGSQAMATVNVSTAHDALG 175
           ++LDLACAA A    R + VKPE   SS  E+Q    K  E GS  ++       H    
Sbjct: 104 SQLDLACAAAAAAKSRDSSVKPEGVSSSFAEDQRVINKNCESGSSPVS----GNGHGITK 159

Query: 176 THPKADFRPLGSADLPAVQARPAAQ---VRQSTSGSSREDSDDDELEGDTETIEGLDSVD 232
              +AD    GS  LPA+ + P  Q   VRQ+TSGSSREDSDDDELEGDTET + +D  D
Sbjct: 160 GQNEADG---GSLRLPALPSMPRKQEVPVRQATSGSSREDSDDDELEGDTETNDNMDPAD 216

Query: 233 DKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNN 292
           +KRARRM SNRESARRSRRRKQA LNELE Q GQLR E +SLL  LTD+N+K DE++V+N
Sbjct: 217 EKRARRMQSNRESARRSRRRKQAQLNELEAQVGQLRDERTSLLTRLTDINKKCDEASVDN 276

Query: 293 RILKADIETLRAKVKMAEETVKRVTGLNPLLLARSDVPGVGMPLVNVPLDASRNATHPMQ 352
           RIL A+IETLR KVKMAE+ VKRVTGLNP++LARS++P +GM  V    D S N   PMQ
Sbjct: 277 RILNANIETLRTKVKMAEDQVKRVTGLNPMVLARSNMPNMGMQFVAGQTDVSANVAVPMQ 336

Query: 353 PNPNQFFHQAIPSISTPTPNHQSLDSSFPSNIQLPTVGNPQSDRGGKNMTETSPLQHAVG 412
           PN N FFH ++P +++  P+ Q L +S P+N   P       + G  N+   +PLQ   G
Sbjct: 337 PNNNHFFHHSVPDLTSGAPHLQRLSNSCPNNSVTPLATPLPVNNGTSNIGGIAPLQQVTG 396

Query: 413 ---------LEHVPQGVGHRVSPPGAVPGWDTGLPHAGSKNNKQR 448
                    L+HV +  G  VSPP +V   + GL    +K+NK++
Sbjct: 397 AQNMTDVPPLQHVQKQTGPTVSPPASVLICNKGLSQPVAKDNKKK 441

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118486477|gb|ABK95078.1| unknown [Populus trichocarpa]

 Score =  316 bits (809), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 238/463 (51%), Positives = 289/463 (62%), Gaps = 33/463 (7%)

Query: 1   MNSVFSADDFSDSFLSSPSPPPASFHALPMNRSQSEWELEKFLQEVTVSPRAISSSSASD 60
           MNSVFS DDFSD F  SP P      A  MNRS+SEW LEKFLQEV+      ++S +SD
Sbjct: 1   MNSVFSVDDFSDPFWPSPPPS-PPSTAPAMNRSESEWALEKFLQEVS------AASVSSD 53

Query: 61  NSVPAVIGPSVMSKSRAYEI----GDDDVVEIKKSHRDQSLDPPVIPSSTAPVDSDEYRA 116
            ++ A   PS +S+S    I    G+D+VVEI K         P+  + T P+DSDEYRA
Sbjct: 54  TNIAA---PSALSQSSTSSIPPENGEDEVVEITKHPNPHPQ--PLGRNLTNPIDSDEYRA 108

Query: 117 YLKTKLDLACAAVAL--RTAPVKPEDKSSLIENQTQAAKPSELGSQAMATVNVSTAHDAL 174
           +LK+KLD AC A A+   +  +KPED SSL+E+Q  AA    LG+QA       T H   
Sbjct: 109 FLKSKLDRACTAAAMSRESDVIKPEDFSSLLEDQRLAAGNVSLGTQAF-----RTGHGIS 163

Query: 175 GTHPKADFRPLGSADLPAVQARPAAQVRQSTSGSSREDSDDDELEGDTETIEGLDSVDDK 234
                AD    G   LP  Q +   Q RQ+TSGSSREDSDDD+LEGDT T E  D  D K
Sbjct: 164 MAQIGADGGSPGIPALPTAQKKQEVQTRQTTSGSSREDSDDDDLEGDTGTNENRDPTDAK 223

Query: 235 RARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRI 294
           R RRM SNRESARRSRRRKQA LNE ETQ GQLR E SSLL   TDV+QK D ++V+NRI
Sbjct: 224 RVRRMQSNRESARRSRRRKQAQLNERETQVGQLRDERSSLLSRFTDVHQKCDAASVDNRI 283

Query: 295 LKADIETLRAKVKMAEETVKRVTGLNPLLLARSDVPGVGMPLVNVPLDASRNATHPMQPN 354
           LKADIETLRAKVKM EE VKRVTGLNP+LL   +VP  GMP V   +DAS N   PMQPN
Sbjct: 284 LKADIETLRAKVKMVEEQVKRVTGLNPMLLPGFNVPSPGMPFVGGQVDASTNVAVPMQPN 343

Query: 355 PNQFFHQAIPSISTPTPNHQSLDSSFPSNIQLPTVGNPQSDRGGKNMTETSPLQHAVG-- 412
           P+QFFHQ +  I++  P+ Q L++SFP+N+ LP   NPQ+D G  N    + ++   G  
Sbjct: 344 PHQFFHQPVHGITSAAPHLQRLNNSFPNNL-LPLATNPQTDNGTSNNGGMASMKLTAGGR 402

Query: 413 -------LEHVPQGVGHRVSPPGAVPGWDTGLPHAGSKNNKQR 448
                   + V + VG    P GAVP  D+GLPH   K+ K++
Sbjct: 403 GLGAMPSTQQVQKQVGSTGGPAGAVPMCDSGLPHVFGKDGKKK 445

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|444300790|gb|AGD98704.1| bZIP transcription factor family protein 6 [Camellia sinensis]

 Score =  276 bits (707), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 205/468 (43%), Positives = 270/468 (57%), Gaps = 71/468 (15%)

Query: 1   MNSVFSADDFSDSFLSSPSP-------------PPASFHALPMNRSQSEWELEKFLQEVT 47
           M+ VFS DD +D F S P+P               +  H   MNRS+SEW  ++FLQE  
Sbjct: 1   MDRVFSVDDMADQFWS-PAPVRLPMTAEEETTSSSSKVHPTMMNRSESEWAFQRFLQE-- 57

Query: 48  VSPRAISSSSASDNSV--PAVIGPSVMSKSRAYEIGDDDVVEIKKS------------HR 93
                     A +N+    +   PS  + + +  I ++DVVEIK              HR
Sbjct: 58  ----------ARNNTTHSESESSPSASAVASSSAIPENDVVEIKDQPQPQPQPQPRAQHR 107

Query: 94  D---------QSLDPPVIPSSTAPVDSDEYRAYLKTKLDLACAAVAL-RTAPVKPEDKSS 143
                      S+ PP +P     VDS+EY+A+LK++L+LACAAVAL R + VK ++   
Sbjct: 108 QSTNQQTASFNSVAPPNVP-----VDSEEYQAFLKSRLNLACAAVALTRASFVKSQESPI 162

Query: 144 LIENQTQAAKPSELGSQAMATVNVSTAHDALGTHPKADFRPLGSADLPAVQARPAAQVRQ 203
           + +N +QA+   +LG QA+      + +       K    PLG   LPA++ +   QV+ 
Sbjct: 163 VADNGSQASSTGQLGMQALGE---GSGYGLPKGQDKDVIGPLGIPSLPAMEKKSVVQVKS 219

Query: 204 STSGSSREDSDDDELEGDTETIEGLDSVDDKRARRMLSNRESARRSRRRKQAHLNELETQ 263
           +TSGSSRE SDDDE EG+TET    D  D KR RRMLSNRESARRSRRRKQAHL ELETQ
Sbjct: 220 TTSGSSREQSDDDEAEGETET-NNTDPTDAKRVRRMLSNRESARRSRRRKQAHLTELETQ 278

Query: 264 AGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGLNPLL 323
             QLR E+SSLLK L+D++QKY+ESAV+NR+LKAD+ETLRAKVKMAEETVKRVTGLNPL 
Sbjct: 279 VSQLRVENSSLLKRLSDISQKYNESAVDNRVLKADVETLRAKVKMAEETVKRVTGLNPLF 338

Query: 324 LARSDVPGVGMP-LVNVPLDASRNATHPMQPNPN-QFFHQAIPSISTPTPNHQS-LDSSF 380
            A SD+  + MP   + P D S +A  P+Q  PN Q F+Q     S    NH S +++ F
Sbjct: 339 QAMSDMSTMSMPSFADSPSDTSADAAVPVQDVPNQQHFYQ-----SAANNNHMSRIENDF 393

Query: 381 PSNIQLPTVGNPQSDRGGKNMTETSPLQHAVGLEHVPQGVGHRVSPPG 428
              + +P+  N Q   G K M  T+ +Q    LEH+ + +    SP G
Sbjct: 394 ---VDIPSAENEQQSPGNK-MGRTASMQRVASLEHLQKRIRGDASPCG 437

Source: Camellia sinensis

Species: Camellia sinensis

Genus: Camellia

Family: Theaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451342|ref|XP_002279520.1| PREDICTED: light-inducible protein CPRF2-like [Vitis vinifera]

 Score =  276 bits (705), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 209/455 (45%), Positives = 272/455 (59%), Gaps = 65/455 (14%)

Query: 1   MNSVFSADDFSDSFLSSPSPPPASFHALPMNRSQSEWELEKFLQEVTVSPRAISSSSASD 60
           M+ VFS D+  + F +SP    +S     MNRS SEW  ++FLQE +  P + S S++  
Sbjct: 1   MDRVFSVDEIPEQFWASPPS--SSKEPSQMNRSASEWAFQRFLQESSSPPSSSSVSASGP 58

Query: 61  NSVPAVIGPSVMSKSRAYEIGDDDVVEIKKSHRD--------------QSLDPPVIPSST 106
           ++                   ++DVVE+K    D               SLDPP      
Sbjct: 59  SA-------------------ENDVVELKVPIDDPKPTPAPPAPPAPATSLDPP----PN 95

Query: 107 APVDSDEYRAYLKTKLDLACAAVAL-RTAPVKPEDKSSLIENQTQAAKPSELGSQAMATV 165
            P+DS+EY+A+LK++L+LACAAVAL R + VKP+D ++L +  +QA+K S+L SQA    
Sbjct: 96  VPIDSEEYQAFLKSRLNLACAAVALSRASFVKPQDSAALADTGSQASKTSQLRSQAPCK- 154

Query: 166 NVSTAHDALGTHPKADFRPLGSADLPAVQARPAAQVRQSTSGSSREDSDDDELEGDTETI 225
              + +D  G   K    PLG   LPA+Q +  AQ+R +TS SSRE SDDDE+EG+TETI
Sbjct: 155 --GSGYDLSGAPDKEAGGPLGIPSLPAMQKKAGAQLRPTTSESSREHSDDDEVEGETETI 212

Query: 226 EGLDSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKY 285
           E +D  D KR RRMLSNRESARRSRRRKQAHL ELETQ  QLR E+SSLLK LTD++QKY
Sbjct: 213 ENMDPADAKRVRRMLSNRESARRSRRRKQAHLTELETQVAQLRLENSSLLKRLTDISQKY 272

Query: 286 DESAVNNRILKADIETLRAKVKMAEETVKRVTGLNPLLLARSDVPGVGM-PLVNVPLDAS 344
           +E+AV+NR+LKAD+ETLRAKVKMAEETVKRVTGLNPL    S++   GM      P D S
Sbjct: 273 NEAAVDNRVLKADVETLRAKVKMAEETVKRVTGLNPLFQTMSEISMAGMHSFDGSPSDTS 332

Query: 345 RNATHPMQPNPNQFFHQAIPS---IST--PTPNHQSLD-SSFPSNIQLPTVGNPQSDRGG 398
            +A  P+Q  P Q F+ + PS   IST  P  N+   D SS  S +Q P       ++ G
Sbjct: 333 ADAAVPVQDEPKQHFYPS-PSDNLISTHDPRINNGLADVSSVESVLQNPAAAGAAGNKMG 391

Query: 399 KNMTETSPLQHAVGLEHV----------PQGVGHR 423
           +    T+ LQ    LEH+          PQG G++
Sbjct: 392 R----TASLQRVASLEHLQKRIRGAVNGPQGSGNQ 422

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|16797791|gb|AAL27150.1| bZIP transcription factor [Nicotiana tabacum]

 Score =  275 bits (703), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 205/468 (43%), Positives = 264/468 (56%), Gaps = 65/468 (13%)

Query: 1   MNSVFSA-DDFSDSFLSSP--------SPPPASF--HALPMNRSQSEWELEKFLQEVTVS 49
           M  VFS  DD  D F S+P        SP  A+   ++  MNRS SEW  ++FLQE T +
Sbjct: 1   MERVFSMEDDIGDHFWSTPPTADLGVDSPTAAAAVSYSKMMNRSSSEWAFQRFLQEATAA 60

Query: 50  PRAISSSSASDNSVPAVIGPSVMSKSRAYEIGDDDVVEIKKSHRDQSLDPPVIPSSTA-- 107
             + SS             P  M+ S +     +DVVEIK    D++L  P +  STA  
Sbjct: 61  GTSTSSPPQ----------PPTMTASSSSSSHQNDVVEIK----DENLSIPNLNPSTALN 106

Query: 108 ---------------PVDSDEYRAYLKTKLDLACAAVAL-RTAPVKPEDKSSLIENQTQA 151
                           VDS+EY+A+LK++L LACAAVAL R   + P+D  S   +    
Sbjct: 107 SKPASSFGLAPPPNIAVDSEEYQAFLKSQLHLACAAVALTRGKSLNPQDSGSTAHD---- 162

Query: 152 AKPSELGSQAMATVNVST---AHDALGTHPKADFRPLGSADLPAVQARPAAQVRQSTSGS 208
            K SE  S A +  +VST     +      K    P+G   LP VQ +P  QVR +TSGS
Sbjct: 163 -KGSETASAAQSGSHVSTLGSGQEVAKIQDKDAGGPVGIPSLPPVQKKPVVQVRSTTSGS 221

Query: 209 SREDSDDDELEGDTETIEGLDSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLR 268
           SRE SDDDE EG+ ET +G+D  D KR RRMLSNRESARRSRRRKQAHL ELETQ  QLR
Sbjct: 222 SREQSDDDEAEGEAETTQGMDPADAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLR 281

Query: 269 AEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGLNPLLLARSD 328
            E+SSLLK LTD++QKY+E+AV+NR+LKAD+ETLR KVKMAEETVKRVTGLNPL  A S+
Sbjct: 282 VENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRTKVKMAEETVKRVTGLNPLFQAMSE 341

Query: 329 VPGVGMP-LVNVPLDASRNATHPMQPNPNQFFHQAIPSISTPT--PNHQSLDSSFPSNIQ 385
           +  + MP     P D S +A  P+Q +P   ++Q  P+   PT  P  Q+        + 
Sbjct: 342 ISSMVMPSYSGSPSDTSADAAVPVQDDPKHHYYQQPPNNLMPTHDPRIQN------GMVD 395

Query: 386 LPTVGNPQSD-----RGGKNMTETSPLQHAVGLEHVPQGVGHRVSPPG 428
           +P + N + +      GG  M  T+ +Q    LEH+ + +   VS  G
Sbjct: 396 VPPIENVEQNPATAAVGGNKMGRTTSMQRVASLEHLQKRIRGEVSSCG 443

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147796457|emb|CAN74806.1| hypothetical protein VITISV_022136 [Vitis vinifera]

 Score =  269 bits (687), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 204/455 (44%), Positives = 267/455 (58%), Gaps = 52/455 (11%)

Query: 1   MNSVFSADDFSDSFLSSPSPPPASFHALPMNRSQSEWELEKFLQEVTVSPRAISSSSA-- 58
           M+ VFS D+  + F +SP        +  MNRS SEW  ++FLQE +  P + S S++  
Sbjct: 1   MDRVFSVDEIPEQFWASPPSSSKE-PSSQMNRSASEWAFQRFLQESSSPPSSSSVSASGP 59

Query: 59  -SDNSVPAVIGPSVMSKSRAYEIGDDDVVEIKKSHRDQSLDPPVIPSSTAPVDSDEYRAY 117
            ++N V  +  P            DD            SLDPP       P+DS+EY+A+
Sbjct: 60  SAENDVVELKVPI-----------DDPKPTPAPPAPATSLDPP----PNVPIDSEEYQAF 104

Query: 118 LKTKLDLACAAVAL------------------RTAPVKPEDKSSLIENQTQAAKPSELGS 159
           LK++L+LACAAVAL                  + + VKP+D ++L +  +QA+K S+L S
Sbjct: 105 LKSRLNLACAAVALSRVTVDQLPLPLHKLQIIQASFVKPQDSAALADTGSQASKTSQLRS 164

Query: 160 QAMATVNVSTAHDALGTHPKADFRPLGSADLPAVQARPAAQVRQSTSGSSREDSDDDELE 219
           QA       + +D  G   K    PLG   LPA+Q +  AQ+R +TS SSRE SDDDE+E
Sbjct: 165 QAPCK---GSGYDLSGAPDKEAGGPLGIPSLPAMQKKAGAQLRPTTSESSREHSDDDEVE 221

Query: 220 GDTETIEGLDSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLT 279
           G+TETIE +D  D KR RRMLSNRESARRSRRRKQAHL ELETQ  QLR E+SSLLK LT
Sbjct: 222 GETETIENMDPADAKRVRRMLSNRESARRSRRRKQAHLTELETQVAQLRLENSSLLKRLT 281

Query: 280 DVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGLNPLLLARSDVPGVGM-PLVN 338
           D++QKY+E+AV+NR+LKAD+ETLRAKVKMAEETVKRVTGLNPL    S++   GM     
Sbjct: 282 DISQKYNEAAVDNRVLKADVETLRAKVKMAEETVKRVTGLNPLFQTMSEISMAGMHSFDG 341

Query: 339 VPLDASRNATHPMQPNPNQFFHQAIPS---IST--PTPNHQSLD-SSFPSNIQLPTVGNP 392
            P D S +A  P+Q  P Q F+ + PS   IST  P  N+   D SS  S +Q P     
Sbjct: 342 SPSDTSADAAVPVQDEPKQHFYPS-PSDNLISTHDPRINNGLADVSSVESVLQNPAAAGA 400

Query: 393 QSDRGGKNMTETSPLQHAVGLEHVPQGVGHRVSPP 427
             ++ G+    T+ LQ    LEH+ + +   V+ P
Sbjct: 401 AGNKMGR----TASLQRVASLEHLQKRIRGAVNGP 431

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351720703|ref|NP_001237953.1| bZIP protein [Glycine max] gi|183014149|dbj|BAG24402.1| bZIP protein [Glycine max]

 Score =  268 bits (685), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 191/439 (43%), Positives = 265/439 (60%), Gaps = 37/439 (8%)

Query: 1   MNSVFSADDFSDSFLSSPSPPPASFH-ALPMNRSQSEWELEKFLQEVTVSPRAISSSSAS 59
           M+ VFS DD SD F   P  P +  + +  M+RS SEW  ++F+QE + S  +  SSS+ 
Sbjct: 1   MDRVFSVDDISDHFWPPPPIPVSGANTSSQMSRSASEWAFQRFIQEASASAPSPPSSSSP 60

Query: 60  DNSVPAVIGPSVMSKSRAYEIGDDDVVEIKK-SHRDQSLDPPVIPSSTAPV--DSDEYRA 116
            + V               EI D         SH        V+PS   PV  DS+EY+A
Sbjct: 61  ADVV-------------FVEIDDQPKPTPPPPSHGG------VLPSDPGPVALDSEEYQA 101

Query: 117 YLKTKLDLACAAVAL-RTAPVKPEDKSSLIENQTQAAKPSELGSQAMATVNVSTAHDALG 175
           +LK+KL+LACAAVA+ R +  K +D S   +  +Q   PS +GSQ  +  ++ + +D   
Sbjct: 102 FLKSKLNLACAAVAMTRGSLAKSQDPSPFSDGGSQPTNPSLVGSQTTSKGSIPSGNDQSK 161

Query: 176 THPKADFRPLGSADLPAVQARPAAQVRQSTSGSSREDSDDDELEGDTETIEGLDSVDDKR 235
              K    P+G   +PA+Q +PA  +R STSGSSRE SDD+++EG+T   +  D  D KR
Sbjct: 162 LQDKDINAPVGIPSIPAIQKKPAVAIRPSTSGSSREQSDDEDIEGETSMNDNTDPADVKR 221

Query: 236 ARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRIL 295
            RRMLSNRESARRSRRRKQAHL +LETQ  QLR E+S+LLK LTDV+QKY +SAV+NR+L
Sbjct: 222 VRRMLSNRESARRSRRRKQAHLTDLETQVSQLRGENSTLLKRLTDVSQKYSDSAVDNRVL 281

Query: 296 KADIETLRAKVKMAEETVKRVTGLNPLLLARSDVPGVGMPLVN--VPLDASRNATHPMQP 353
           KAD+ETLRAKVKMAEETVKR+TGLNP+  A SD+  +G+P  +   P D S +A+ P+Q 
Sbjct: 282 KADVETLRAKVKMAEETVKRITGLNPMPHAMSDISSLGLPSFDGRSPSDTSADASVPVQD 341

Query: 354 NPNQFFHQAIPSISTPTPNHQSLDSSFPSNIQLPTVGNPQSDR-----GGKNMTETSPLQ 408
           +P+  F+Q  P+++ P P+H  + ++    I   ++ N Q        GG  + +T+ LQ
Sbjct: 342 DPHHHFYQ--PTLNNPIPSHDPIVNNGLGGIS--SIENVQQQNAAAVVGGNKIGQTASLQ 397

Query: 409 HAVGLEHVPQGVGHRVSPP 427
               LEH+ + +  R  PP
Sbjct: 398 RVASLEHLQKRI--RGGPP 414

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725229|ref|NP_001237085.1| bZIP transcription factor bZIP89 [Glycine max] gi|113367196|gb|ABI34655.1| bZIP transcription factor bZIP89 [Glycine max]

 Score =  266 bits (681), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 187/426 (43%), Positives = 255/426 (59%), Gaps = 32/426 (7%)

Query: 1   MNSVFSADDFSDSFLSSPSPPPASFH-ALPMNRSQSEWELEKFLQEVTVSPRAISSSSAS 59
           M+ VFS DD SD F   P  P +  + +  M+RS SEW  ++F+QE + S  +  SSS+ 
Sbjct: 1   MDRVFSVDDISDHFWPPPPIPVSGANTSSQMSRSASEWAFQRFIQEASASAPSPPSSSSP 60

Query: 60  DNSVPAVIGPSVMSKSRAYEIGDDDVVEIKKSHRDQSLDPPVIPSSTAPV--DSDEYRAY 117
            + V   I             G                   V+PS   PV  DS+EY+A+
Sbjct: 61  ADVVFVEIDDQPKPTPPPPSHGG------------------VLPSDPGPVALDSEEYQAF 102

Query: 118 LKTKLDLACAAVAL-RTAPVKPEDKSSLIENQTQAAKPSELGSQAMATVNVSTAHDALGT 176
           LK+KL+LACAAVA+ R +  K +D S   E  +Q   PS + SQ  +  ++ + +D    
Sbjct: 103 LKSKLNLACAAVAMTRGSLAKSQDPSPFSEGGSQPTNPSLVESQTTSKGSIPSENDPSKL 162

Query: 177 HPKADFRPLGSADLPAVQARPAAQVRQSTSGSSREDSDDDELEGDTETIEGLDSVDDKRA 236
             K    P+G   +PA+Q +PA  +R STSGSSRE SDD+++EG+T   +  D  D KR 
Sbjct: 163 QDKDTNVPVGIPSIPAMQKKPAVAIRPSTSGSSREQSDDEDIEGETSMNDNTDPADVKRV 222

Query: 237 RRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILK 296
           RRMLSNRESARRSRRRKQAHL +LETQ  QLR E+S+LLK LTDV+QKY +SAV+NR+LK
Sbjct: 223 RRMLSNRESARRSRRRKQAHLTDLETQVSQLRGENSTLLKRLTDVSQKYSDSAVDNRVLK 282

Query: 297 ADIETLRAKVKMAEETVKRVTGLNPLLLARSDVPGVGMPLVN--VPLDASRNATHPMQPN 354
           AD+ETLR KVKMAEETVKR+TGLNPLL A SD+  +G+P  +   P D S +A  P+Q +
Sbjct: 283 ADVETLRTKVKMAEETVKRITGLNPLLHAMSDISSLGLPSFDGRSPSDTSADAAVPVQDD 342

Query: 355 PNQFFHQAIPSISTPTPNHQSLDSSFPSNIQLPTVGNPQSDR----GGKNMTETSPLQHA 410
           P+  F+Q  P+ + P P+H  + ++    I   ++ N Q +     GG  M +T+ LQ  
Sbjct: 343 PHHHFYQ--PTSTNPIPSHDPIVNNGLGGIS--SIENVQQNAAVVLGGNKMGQTASLQRV 398

Query: 411 VGLEHV 416
             LEH+
Sbjct: 399 ASLEHL 404

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225437201|ref|XP_002281328.1| PREDICTED: light-inducible protein CPRF2-like [Vitis vinifera]

 Score =  265 bits (678), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 208/476 (43%), Positives = 274/476 (57%), Gaps = 54/476 (11%)

Query: 1   MNSVFSADDFSDSFLSSPSPPPASFHALPMNRSQSEWELEKFLQEVTVSPRA------IS 54
           M SVFS+DD    + +  +   A      M+R  SEW LEKFL E + S  A      +S
Sbjct: 1   MESVFSSDDLEAMWTAVTAGTSAG-----MSRISSEWMLEKFLLEASSSSPASSTSCPVS 55

Query: 55  SSSASDNSVPAVIGPSVMSKSRAYEIG--------DDDVVEIKKSHRDQSLDPPVIPSST 106
           + S        V  P   + + A            DD+VVEIK             PS  
Sbjct: 56  AVSQCPAPYADVTAPYAAAAAAAQSSSSKSRPRGEDDEVVEIKVRSP---------PSDQ 106

Query: 107 APVDSDEYRAYLKTKLDLACAAVAL-RTAPVKPED------------KSSLIENQTQAAK 153
            P +  +++A+L+ +LDLACAAVAL R + VKP++            + S +  QTQ+ K
Sbjct: 107 PPENPVDHQAFLRKRLDLACAAVALSRESGVKPQESAVKPQESAVKPQESALSMQTQS-K 165

Query: 154 PSELGSQAMATVNVSTAHDALGTHPKADFRPLGSADLPAVQARPAAQVRQSTSGSSREDS 213
           PS+LGSQA+ATV+    H    T  K +   LG       Q +  AQV  +TSGSSRE S
Sbjct: 166 PSQLGSQAVATVD--PGHVFPITQDKVEGGSLGIPASATSQNKSGAQVITTTSGSSRELS 223

Query: 214 DDDELEGDTETIEGLDSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSS 273
           DDDELEG+T+T   +D  D+KRARRMLSNRESARRSRRRKQ HL+ELETQ  QL  E+SS
Sbjct: 224 DDDELEGETDTTGNMDPADEKRARRMLSNRESARRSRRRKQEHLSELETQVSQLGVENSS 283

Query: 274 LLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGLNPLLLARSDVPGVG 333
           LLK LTD+NQKY+E+AV+NR+LKAD+ETLR KV+MAE+ VKRVTGL  LL A  D+P +G
Sbjct: 284 LLKRLTDINQKYNEAAVDNRVLKADVETLRTKVRMAEDAVKRVTGLTSLLPAIPDIPSMG 343

Query: 334 MPLV-NVPLDASRNATHPMQPNPNQFFHQAIPSISTPTPNHQSLDSSFPSNI-QLPTVGN 391
           MP V N   + S +A  P+Q + N F H  +P+     P+ Q L++ FP+N   LPT  +
Sbjct: 344 MPFVNNTSSNTSADAAVPVQRDSNHFIHPPVPNNLIAPPHDQRLNNGFPTNCPPLPT-ES 402

Query: 392 PQSDRGGKNMTETSPLQHAVGLEHVPQGVGHRVSPPGAVPGWDTGLPHAGSKNNKQ 447
             +  G KNM +TSP+Q+   +  V  G     +P G +PGWD+   H  +    Q
Sbjct: 403 LLNGAGPKNMPQTSPMQN---VSRVCVG----ANPCGVMPGWDSVPSHVTTNIKNQ 451

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298204854|emb|CBI34161.3| unnamed protein product [Vitis vinifera]

 Score =  259 bits (662), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 176/349 (50%), Positives = 226/349 (64%), Gaps = 43/349 (12%)

Query: 1   MNSVFSADDFSDSFLSSPSPPPASFHALPMNRSQSEWELEKFLQEVTVSPRAISSSSASD 60
           M+ VFS D+  + F +SP    +S     MNRS SEW  ++FLQE +  P + S S++  
Sbjct: 1   MDRVFSVDEIPEQFWASPPS--SSKEPSQMNRSASEWAFQRFLQESSSPPSSSSVSASGP 58

Query: 61  NSVPAVIGPSVMSKSRAYEIGDDDVVEIKKSHRD--------------QSLDPPVIPSST 106
           ++                   ++DVVE+K    D               SLDPP      
Sbjct: 59  SA-------------------ENDVVELKVPIDDPKPTPAPPAPPAPATSLDPP----PN 95

Query: 107 APVDSDEYRAYLKTKLDLACAAVAL-RTAPVKPEDKSSLIENQTQAAKPSELGSQAMATV 165
            P+DS+EY+A+LK++L+LACAAVAL R + VKP+D ++L +  +QA+K S+L SQA    
Sbjct: 96  VPIDSEEYQAFLKSRLNLACAAVALSRASFVKPQDSAALADTGSQASKTSQLRSQAPCK- 154

Query: 166 NVSTAHDALGTHPKADFRPLGSADLPAVQARPAAQVRQSTSGSSREDSDDDELEGDTETI 225
              + +D  G   K    PLG   LPA+Q +  AQ+R +TS SSRE SDDDE+EG+TETI
Sbjct: 155 --GSGYDLSGAPDKEAGGPLGIPSLPAMQKKAGAQLRPTTSESSREHSDDDEVEGETETI 212

Query: 226 EGLDSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKY 285
           E +D  D KR RRMLSNRESARRSRRRKQAHL ELETQ  QLR E+SSLLK LTD++QKY
Sbjct: 213 ENMDPADAKRVRRMLSNRESARRSRRRKQAHLTELETQVAQLRLENSSLLKRLTDISQKY 272

Query: 286 DESAVNNRILKADIETLRAKVKMAEETVKRVTGLNPLLLARSDVPGVGM 334
           +E+AV+NR+LKAD+ETLRAKVKMAEETVKRVTGLNPL    S++   GM
Sbjct: 273 NEAAVDNRVLKADVETLRAKVKMAEETVKRVTGLNPLFQTMSEISMAGM 321

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	448
TAIR|locus:505006398	403	BZIP25 "basic leucine zipper 2	0.375	0.416	0.445	7.7e-48
TAIR|locus:2184251	314	BZO2H3 "AT5G28770" [Arabidopsi	0.243	0.347	0.522	1.4e-41
TAIR|locus:2149403	277	BZIP9 "AT5G24800" [Arabidopsis	0.227	0.368	0.409	2e-12
TAIR|locus:2053124	171	bZIP2 "AT2G18160" [Arabidopsis	0.283	0.742	0.255	5.9e-05

TAIR|locus:505006398 BZIP25 "basic leucine zipper 25" [Arabidopsis thaliana (taxid:3702)]

 Score = 339 (124.4 bits), Expect = 7.7e-48, Sum P(2) = 7.7e-48
 Identities = 81/182 (44%), Positives = 107/182 (58%)

Query:   229 DSVDDKRARRMLXXXXXXXXXXXXKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDES 288
             D  D KRARRML            KQ  +NE +TQ GQLRAEHS+L+  L+D+N KYD +
Sbjct:   226 DPTDVKRARRMLSNRESARRSRRRKQEQMNEFDTQVGQLRAEHSTLINRLSDMNHKYDAA 285

Query:   289 AVNNRILKADIETLRAKVKMAEETVKRVTGLNPLLLARSDVPGVGMPLVNVPLDASRNAT 348
             AV+NRIL+ADIETLR KVKMAEETVKRVTG+NPL  +R   P +G+P  N P     +A+
Sbjct:   286 AVDNRILRADIETLRTKVKMAEETVKRVTGVNPLHWSR---PNMGIPFSNTP-----SAS 337

Query:   349 HPMQPNPNQFFHQAIPSISTPT--PNHQSLDSS--FPSNIQLPTVGNPQSDRGGKNMTET 404
               + PN N     A  S +T      +Q ++++   P  +    + NP +     N+ ET
Sbjct:   338 SSIPPNSNHILKPANSSTNTSAGLAQNQRVETANFLPEQVNREGMQNPFAP--DSNLYET 395

Query:   405 SP 406
              P
Sbjct:   396 LP 397

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:2000693 "positive regulation of seed maturation" evidence=IDA

GO:0007165 "signal transduction" evidence=RCA

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009755 "hormone-mediated signaling pathway" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

TAIR|locus:2184251 BZO2H3 "AT5G28770" [Arabidopsis thaliana (taxid:3702)]

 Score = 283 (104.7 bits), Expect = 1.4e-41, Sum P(3) = 1.4e-41
 Identities = 59/113 (52%), Positives = 80/113 (70%)

Query:   234 KRARRMLXXXXXXXXXXXXKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNR 293
             KR +RML            KQAHL+ELETQ  QLR E+S L+KGLTDV Q +++++V NR
Sbjct:   153 KRVKRMLSNRESARRSRRRKQAHLSELETQVSQLRVENSKLMKGLTDVTQTFNDASVENR 212

Query:   294 ILKADIETLRAKVKMAEETVKRVTGLNPLLLARSDVPGVGMPLVNVPLDASRN 346
             +LKA+IETLRAKVKMAEETVKR+TG NP+     ++P + +  V++P + S +
Sbjct:   213 VLKANIETLRAKVKMAEETVKRLTGFNPMF---HNMPQI-VSTVSLPSETSNS 261

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IPI

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0071333 "cellular response to glucose stimulus" evidence=IEP

GO:0071215 "cellular response to abscisic acid stimulus" evidence=IEP

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

TAIR|locus:2149403 BZIP9 "AT5G24800" [Arabidopsis thaliana (taxid:3702)]

 Score = 184 (69.8 bits), Expect = 2.0e-12, P = 2.0e-12
 Identities = 43/105 (40%), Positives = 58/105 (55%)

Query:   229 DSVDDKRARRMLXXXXXXXXXXXXKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDES 288
             D  D KR RRM             KQ +L +LETQ   L+ ++S+L K L D  Q++  +
Sbjct:   117 DPNDLKRIRRMNSNRESAKRSRRRKQEYLVDLETQVDSLKGDNSTLYKQLIDATQQFRSA 176

Query:   289 AVNNRILKADIETLRAKVKMAEETVKR---VTGLNPLLLARSDVP 330
               NNR+LK+D+ETLR KVK+AE+ V R    + LN LL      P
Sbjct:   177 GTNNRVLKSDVETLRVKVKLAEDLVARGSLTSSLNQLLQTHLSPP 221

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0071333 "cellular response to glucose stimulus" evidence=IEP

GO:0042803 "protein homodimerization activity" evidence=IPI

TAIR|locus:2053124 bZIP2 "AT2G18160" [Arabidopsis thaliana (taxid:3702)]

 Score = 114 (45.2 bits), Expect = 5.9e-05, P = 5.9e-05
 Identities = 33/129 (25%), Positives = 56/129 (43%)

Query:   230 SVDDKRARRMLXXXXXXXXXXXXKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESA 289
             +VD+++ +RML            KQ H+++L  Q  QL  ++  +L  LT  +Q Y +  
Sbjct:    27 TVDERKRKRMLSNRESARRSRMRKQKHVDDLTAQINQLSNDNRQILNSLTVTSQLYMKIQ 86

Query:   290 VNNRILKADIETLRAKVKMAEETVKRVTGLNPLLLARSDVPGVGMPLVNVPLDASRNATH 349
               N +L A +E L  +++   E V  V   N        + G G     V +D   +  +
Sbjct:    87 AENSVLTAQMEELSTRLQSLNEIVDLVQS-NGAGFGVDQIDGCGFDDRTVGIDGYYDDMN 145

Query:   350 PMQPNPNQF 358
              M  N N +
Sbjct:   146 -MMSNVNHW 153


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.310   0.127   0.361    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      448       355   0.00080  117 3  11 23  0.49    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  604 (64 KB)
  Total size of DFA:  213 KB (2118 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  32.98u 0.08s 33.06t   Elapsed:  00:00:01
  Total cpu time:  32.98u 0.08s 33.06t   Elapsed:  00:00:01
  Start:  Thu May  9 23:18:09 2013   End:  Thu May  9 23:18:10 2013

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0046982 "protein heterodimerization activity" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O22763	BZP10_ARATH	No assigned EC number	0.4112	0.8638	0.9416	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	448
pfam12498	112	pfam12498, bZIP_C, Basic leucine-zipper C terminal	2e-23
smart00338	65	smart00338, BRLZ, basic region leucin zipper	7e-16
pfam00170	64	pfam00170, bZIP_1, bZIP transcription factor	2e-11
cd12193	54	cd12193, B_zip1, basic leucine zipper DNA-binding	2e-06
pfam07716	54	pfam07716, bZIP_2, Basic region leucine zipper	2e-06
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.002
TIGR04211	198	TIGR04211, SH3_and_anchor, SH3 domain protein	0.004

>gnl|CDD|221605 pfam12498, bZIP_C, Basic leucine-zipper C terminal

 Score = 94.1 bits (234), Expect = 2e-23
 Identities = 49/128 (38%), Positives = 64/128 (50%), Gaps = 16/128 (12%)

Query: 301 TLRAKVKMAEETVKRVTGLNPLLLARSDVPGVGMPLVNVPLDASRNATHPMQPNPNQFFH 360
           TLRAKVKMAE+TVKRVTGLNPLL A S++  +GMP    P DAS +A+ P+Q N + +F 
Sbjct: 1   TLRAKVKMAEDTVKRVTGLNPLLQAISEMSSMGMPFSG-PSDASSDASVPIQDNSSNYFQ 59

Query: 361 QAIPSISTPTPNHQSLDSSFPSNIQLPTVGNPQSDRGGKNMTETSPLQHAVGLEHVPQGV 420
           Q   +      + Q         +   T G          M  T  LQ    LEH+ + +
Sbjct: 60  QPAVNPGITVHDDQPE-------LGGATAGGK--------MGRTPSLQRVASLEHLQKRI 104

Query: 421 GHRVSPPG 428
              VS   
Sbjct: 105 RGGVSSST 112

This family of proteins is found in eukaryotes. Proteins in this family are typically between 174 and 411 amino acids in length. The family is found in association with pfam00170. There is a conserved KVK sequence motif. There is a single completely conserved residue K that may be functionally important. Various bZIP proteins have been found and shown to play a role in seed-specific gene expression. bZIP binds to the alpha-globulin gene promoter, but not to promoters of other major storage genes such as glutelin, prolamin and albumin. Length = 112

>gnl|CDD|197664 smart00338, BRLZ, basic region leucin zipper

 Score = 71.4 bits (176), Expect = 7e-16
 Identities = 25/62 (40%), Positives = 37/62 (59%)

Query: 232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVN 291
           D+KR RR   NRE+ARRSR RK+A + ELE +  QL AE+  L K +  + ++ ++    
Sbjct: 3   DEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSE 62

Query: 292 NR 293
             
Sbjct: 63  LE 64

Length = 65

>gnl|CDD|201054 pfam00170, bZIP_1, bZIP transcription factor

 Score = 59.3 bits (144), Expect = 2e-11
 Identities = 23/47 (48%), Positives = 32/47 (68%)

Query: 232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGL 278
           + KR RR   NRE+ARRSR RK+A++ ELE +  +L AE+ +L   L
Sbjct: 3   ELKRERRRQKNREAARRSRLRKKAYIEELEEKVKELEAENKTLRSEL 49

The Pfam entry includes the basic region and the leucine zipper region. Length = 64

>gnl|CDD|213400 cd12193, B_zip1, basic leucine zipper DNA-binding and multimerization region of GCN4 and related proteins

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 20/42 (47%), Positives = 28/42 (66%)

Query: 233 DKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSL 274
           D RAR+   NRE+ARRSR RK   + +LE +  +L +E+S L
Sbjct: 1   DPRARKRARNREAARRSRARKMERMKQLEDKVEELTSENSDL 42

Basic leucine zipper (bZIP) transcription factors act in networks of homo- and hetero-dimers in the regulation in a diverse set of cellular pathways. Classical leucine zippers have alpha helices with leucine residues 7 amino acids apart, which stabilize dimerization with a parallel leucine zipper domain. Dimerization creates a pair of basic regions that bind DNA and undergo conformational change. GCN4 was identified in Saccharomyces cerevisiae from mutations in a deficiency in activation with the general amino acid control pathway. GCN4 encodes a trans-activator of amino acid biosynthetic genes containing 2 acidic activation domains and a C-terminal bZIP domain, comprised of a basic alpha-helical DNA-binding region and a coiled-coil dimerization region. Length = 54

>gnl|CDD|203738 pfam07716, bZIP_2, Basic region leucine zipper

 Score = 44.1 bits (105), Expect = 2e-06
 Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLK 276
           D+ R RR   N E+ARRSR +K+    ELE +  +L  E++ L +
Sbjct: 3   DEYRDRRR-RNNEAARRSREKKKQREEELEERVKELEEENAQLRQ 46

Length = 54

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 40.8 bits (96), Expect = 0.002
 Identities = 20/132 (15%), Positives = 49/132 (37%), Gaps = 23/132 (17%)

Query: 198 AAQVRQSTSGSSREDSDDDELEGDTETIEGLDSVDDKRARRMLSNRESARRSRRRK-QAH 256
             ++ +  +   +  ++ +ELE + E        ++++ R  L+   +  +      +A 
Sbjct: 321 EERLAKLEAEIDKLLAEIEELEREIE--------EERKRRDKLTEEYAELKEELEDLRAE 372

Query: 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRIL--------------KADIETL 302
           L E++ +  + R E     + L  + ++ +E       L               A I  +
Sbjct: 373 LEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGI 432

Query: 303 RAKVKMAEETVK 314
            AK+   EE  +
Sbjct: 433 EAKINELEEEKE 444

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein

 Score = 38.1 bits (89), Expect = 0.004
 Identities = 17/83 (20%), Positives = 34/83 (40%)

Query: 238 RMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKA 297
           R LS+  SAR      Q  L EL+ +  +L+ + + L +   ++ Q+          L+ 
Sbjct: 56  RYLSDTPSARERLPELQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQK 115

Query: 298 DIETLRAKVKMAEETVKRVTGLN 320
           ++  ++     A E  +    L 
Sbjct: 116 ELARIKQLSANAIELDEENRELR 138

Members of this protein family have a signal peptide, a strongly conserved SH3 domain, a variable region, and then a C-terminal hydrophobic transmembrane alpha helix region. Length = 198

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	448
PF12498	115	bZIP_C: Basic leucine-zipper C terminal; InterPro:	99.94
smart00338	65	BRLZ basic region leucin zipper.	99.32
PF00170	64	bZIP_1: bZIP transcription factor cAMP response el	99.27
KOG4005	292	consensus Transcription factor XBP-1 [Transcriptio	99.23
KOG4343	655	consensus bZIP transcription factor ATF6 [Transcri	99.19
PF07716	54	bZIP_2: Basic region leucine zipper; InterPro: IPR	98.97
KOG0709	472	consensus CREB/ATF family transcription factor [Tr	98.95
KOG3584	348	consensus cAMP response element binding protein an	98.92
KOG0837	279	consensus Transcriptional activator of the JUN fam	98.03
PF03131	92	bZIP_Maf: bZIP Maf transcription factor; InterPro:	98.01
KOG4196	135	consensus bZIP transcription factor MafK [Transcri	96.97
KOG4571	294	consensus Activating transcription factor 4 [Trans	96.84
KOG3119	269	consensus Basic region leucine zipper transcriptio	96.69
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	96.43
KOG3863	604	consensus bZIP transcription factor NRF1 [Transcri	96.25
TIGR02449	65	conserved hypothetical protein TIGR02449. Members	96.25
PRK10884	206	SH3 domain-containing protein; Provisional	95.79
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	95.79
PF07989	75	Microtub_assoc: Microtubule associated; InterPro:	95.41
PF06156	107	DUF972: Protein of unknown function (DUF972); Inte	95.4
PF02183	45	HALZ: Homeobox associated leucine zipper; InterPro	95.32
TIGR02449	65	conserved hypothetical protein TIGR02449. Members	94.76
PRK13169	110	DNA replication intiation control protein YabA; Re	94.7
PF14197	69	Cep57_CLD_2: Centrosome localisation domain of PPC	94.6
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	94.57
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	94.52
PF06156	107	DUF972: Protein of unknown function (DUF972); Inte	94.52
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	94.4
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	94.37
PRK13729	475	conjugal transfer pilus assembly protein TraB; Pro	94.3
PRK13169	110	DNA replication intiation control protein YabA; Re	94.28
COG4467	114	Regulator of replication initiation timing [Replic	94.25
PF04899	70	MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 Th	93.59
PRK10884	206	SH3 domain-containing protein; Provisional	93.56
PRK11637	428	AmiB activator; Provisional	93.53
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	93.04
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	93.01
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	92.98
PRK15422	79	septal ring assembly protein ZapB; Provisional	92.6
PRK11637	428	AmiB activator; Provisional	92.31
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	92.17
PRK15422	79	septal ring assembly protein ZapB; Provisional	92.0
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	91.62
COG2433	652	Uncharacterized conserved protein [Function unknow	91.57
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	91.47
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	91.14
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	91.08
TIGR03752	472	conj_TIGR03752 integrating conjugative element pro	90.77
COG4026	290	Uncharacterized protein containing TOPRIM domain,	90.7
PF14197	69	Cep57_CLD_2: Centrosome localisation domain of PPC	90.56
COG4026	290	Uncharacterized protein containing TOPRIM domain,	90.55
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	90.54
PF02403	108	Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal dom	90.45
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	90.21
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	90.11
PF06785	401	UPF0242: Uncharacterised protein family (UPF0242);	90.05
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	90.04
PF13747	89	DUF4164: Domain of unknown function (DUF4164)	89.84
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	89.74
PF05266	190	DUF724: Protein of unknown function (DUF724); Inte	89.52
TIGR03495	135	phage_LysB phage lysis regulatory protein, LysB fa	89.39
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	89.17
KOG4005	292	consensus Transcription factor XBP-1 [Transcriptio	88.81
PF10186	302	Atg14: UV radiation resistance protein and autopha	88.8
PRK09039	343	hypothetical protein; Validated	88.72
PF12808	52	Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2	88.55
PF10224	80	DUF2205: Predicted coiled-coil protein (DUF2205);	88.45
PF02183	45	HALZ: Homeobox associated leucine zipper; InterPro	88.4
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	88.34
PF14662	193	CCDC155: Coiled-coil region of CCDC155	88.22
PF04880	166	NUDE_C: NUDE protein, C-terminal conserved region;	88.05
PF10805	106	DUF2730: Protein of unknown function (DUF2730); In	87.79
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	87.78
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	87.75
KOG1962	216	consensus B-cell receptor-associated protein and r	87.66
PF12329	74	TMF_DNA_bd: TATA element modulatory factor 1 DNA b	87.54
PF08647	96	BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR01395	87.53
TIGR00219	283	mreC rod shape-determining protein MreC. MreC (mur	87.18
PRK04406	75	hypothetical protein; Provisional	86.85
COG4467	114	Regulator of replication initiation timing [Replic	86.83
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	86.81
PF12329	74	TMF_DNA_bd: TATA element modulatory factor 1 DNA b	86.7
PRK02119	73	hypothetical protein; Provisional	86.52
PRK00888	105	ftsB cell division protein FtsB; Reviewed	86.45
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	86.44
PF04102	69	SlyX: SlyX; InterPro: IPR007236 The SlyX protein h	86.28
PRK05431	425	seryl-tRNA synthetase; Provisional	86.28
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	86.26
PHA02562	562	46 endonuclease subunit; Provisional	85.35
COG4942	420	Membrane-bound metallopeptidase [Cell division and	85.28
KOG3119	269	consensus Basic region leucine zipper transcriptio	85.12
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	85.1
PF11180	192	DUF2968: Protein of unknown function (DUF2968); In	84.98
KOG4196	135	consensus bZIP transcription factor MafK [Transcri	84.86
PF06785	401	UPF0242: Uncharacterised protein family (UPF0242);	84.84
KOG1414	395	consensus Transcriptional activator FOSB/c-Fos and	84.66
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	84.64
PF15035	182	Rootletin: Ciliary rootlet component, centrosome c	84.62
PF14662	193	CCDC155: Coiled-coil region of CCDC155	84.61
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	84.59
KOG0982	502	consensus Centrosomal protein Nuf [Cell cycle cont	84.52
COG4942	420	Membrane-bound metallopeptidase [Cell division and	84.51
PRK04325	74	hypothetical protein; Provisional	84.5
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	84.03
KOG1853	333	consensus LIS1-interacting protein NUDE [Cytoskele	83.93
PF05837	106	CENP-H: Centromere protein H (CENP-H); InterPro: I	83.93
PF00170	64	bZIP_1: bZIP transcription factor cAMP response el	83.89
PRK00846	77	hypothetical protein; Provisional	83.86
PRK09039	343	hypothetical protein; Validated	83.71
PF12777	344	MT: Microtubule-binding stalk of dynein motor; Int	83.68
PRK02793	72	phi X174 lysis protein; Provisional	83.63
KOG4403	575	consensus Cell surface glycoprotein STIM, contains	83.15
PF10805	106	DUF2730: Protein of unknown function (DUF2730); In	83.08
PF10226	195	DUF2216: Uncharacterized conserved proteins (DUF22	83.01
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	82.97
PF07407	420	Seadorna_VP6: Seadornavirus VP6 protein; InterPro:	82.9
PF10211	189	Ax_dynein_light: Axonemal dynein light chain; Inte	82.77
smart00338	65	BRLZ basic region leucin zipper.	82.73
PF05266	190	DUF724: Protein of unknown function (DUF724); Inte	82.7
PF12711	86	Kinesin-relat_1: Kinesin motor; InterPro: IPR02465	82.63
PF06810	155	Phage_GP20: Phage minor structural protein GP20; I	82.53
PF10211	189	Ax_dynein_light: Axonemal dynein light chain; Inte	82.53
PF06632	342	XRCC4: DNA double-strand break repair and V(D)J re	82.52
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	82.48
PF10205	102	KLRAQ: Predicted coiled-coil domain-containing pro	82.46
PF15294	278	Leu_zip: Leucine zipper	82.42
TIGR03752	472	conj_TIGR03752 integrating conjugative element pro	82.36
KOG1414	395	consensus Transcriptional activator FOSB/c-Fos and	82.3
PRK05431	425	seryl-tRNA synthetase; Provisional	81.97
PF11577	68	NEMO: NF-kappa-B essential modulator NEMO; InterPr	81.94
PF00038	312	Filament: Intermediate filament protein; InterPro:	81.92
PRK00295	68	hypothetical protein; Provisional	81.83
KOG0288	459	consensus WD40 repeat protein TipD [General functi	81.58
PF04102	69	SlyX: SlyX; InterPro: IPR007236 The SlyX protein h	81.57
PHA03162	135	hypothetical protein; Provisional	81.55
PF04977	80	DivIC: Septum formation initiator; InterPro: IPR00	81.4
smart00340	44	HALZ homeobox associated leucin zipper.	81.33
PRK13922	276	rod shape-determining protein MreC; Provisional	81.3
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	81.17
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	81.14
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	80.76
PF07058	351	Myosin_HC-like: Myosin II heavy chain-like; InterP	80.74
PRK02119	73	hypothetical protein; Provisional	80.67
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	80.65
PRK13922	276	rod shape-determining protein MreC; Provisional	80.62
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	80.47
PLN02678	448	seryl-tRNA synthetase	80.44
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	80.3
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	80.29
PF07412	200	Geminin: Geminin; InterPro: IPR022786 This family	80.03
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	80.02
PF03962	188	Mnd1: Mnd1 family; InterPro: IPR005647 This family	80.02

>PF12498 bZIP_C: Basic leucine-zipper C terminal; InterPro: IPR020983 Basic leucine-zipper (bZIP) proteins are found in eukaryotes

Probab=99.94  E-value=6.4e-28  Score=211.01  Aligned_cols=114  Identities=39%  Similarity=0.604  Sum_probs=97.9

Q ss_pred             HHHHHHHHHHHHHHHHhhcchhhhhccCCCCCCCCCCCCCCccCcCCCCCCCCCCCccccccCCCCCCCCCCCCCCCCCC
Q 013166          301 TLRAKVKMAEETVKRVTGLNPLLLARSDVPGVGMPLVNVPLDASRNATHPMQPNPNQFFHQAIPSISTPTPNHQSLDSSF  380 (448)
Q Consensus       301 ~Lr~kLk~aE~~v~Rl~~ln~~l~~~~~~~~~~~p~~~~~~~~s~~~~vp~q~~~~~~~~~~~~~~~~~~~~~~~~~n~~  380 (448)
                      +||+|||||||+|+|++++|++|+++.++++++|||.++++|+.+++++|||+++.|||+++.++.+++..+     |. 
T Consensus         1 TLRAKVKMAEe~VkRvTg~n~~~~~~~~~ss~~~p~~~~~s~~~~~~~~Piq~~~~~~~~~~~~~~~i~~~~-----~~-   74 (115)
T PF12498_consen    1 TLRAKVKMAEETVKRVTGMNPMFQAISQMSSMGMPFSSSPSPADSSAAVPIQDNSNNYFHQPNPNPTISVHG-----NN-   74 (115)
T ss_pred             ChhHHHHHHHHHHHHHhccCccccccccCCCCCCCCCCCcccccccccCCccCCchhhccCCCCCCCcCCCC-----cc-
Confidence            499999999999999999999999999999999999999999888899999999999999988888876322     11 


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccCCccCCC
Q 013166          381 PSNIQLPTVGNPQSDRGGKNMTETSPLQHAVGLEHVPQGVGHRVSPP  427 (448)
Q Consensus       381 ~~~~~~p~~~~~q~~~~~~~m~~~~s~q~vaslehlqkr~~~~~~~~  427 (448)
                          +.+.   ++...++.||+|+++|||||||||||||||+|+++|
T Consensus        75 ----~~~~---~~~~~~~~~~~~t~smqrvaslEhlQkri~~g~~~~  114 (115)
T PF12498_consen   75 ----DNPE---PGGAFVGGKMGRTASMQRVASLEHLQKRIRGGPTSS  114 (115)
T ss_pred             ----cccc---cccccccccccCCccCccchhHHHHHHHhcCCCCCC
Confidence                1221   122347889999999999999999999999998765

They are typically between 174 and 411 amino acids in length. Various bZIP proteins have been found and shown to play a role in seed-specific gene expression. bZIP binds to the alpha-globulin gene promoter, but not to promoters of other major storage genes such as glutelin, prolamin and albumin []. This entry represents a C-terminal domain found in bZIP proteins. It is found in association with PF00170 from PFAM. There is a conserved KVK sequence motif and a single completely conserved residue K that may be functionally important.

>smart00338 BRLZ basic region leucin zipper

Probab=99.32  E-value=1.1e-11  Score=97.67  Aligned_cols=62  Identities=40%  Similarity=0.547  Sum_probs=54.7

Q ss_pred             hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          231 VDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNN  292 (448)
Q Consensus       231 ~d~KR~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN  292 (448)
                      .++|+.||+++||+||++||.||++|+.+||.+|..|+.+|..|..++..|..++..+..+|
T Consensus         2 ~~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~   63 (65)
T smart00338        2 EDEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL   63 (65)
T ss_pred             ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            36799999999999999999999999999999999999999999999987666665555544

>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization

Probab=99.27  E-value=2.4e-11  Score=95.55  Aligned_cols=61  Identities=39%  Similarity=0.571  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNN  292 (448)
Q Consensus       232 d~KR~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN  292 (448)
                      +.|+.+|+++||+||++||.||++|+++|+.+|..|+.+|..|..++..|...+..|..+|
T Consensus         3 ~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~   63 (64)
T PF00170_consen    3 EDKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN   63 (64)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            5789999999999999999999999999999999999999999999998888888887776

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....

>KOG4005 consensus Transcription factor XBP-1 [Transcription]

Probab=99.23  E-value=7.6e-11  Score=114.82  Aligned_cols=79  Identities=27%  Similarity=0.382  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAE  310 (448)
Q Consensus       232 d~KR~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE  310 (448)
                      |+|-.||+++||.+|+.+|.|||+++++||.+|..|..||+.|+.+.+.|+.+.+.|.++|.+|..+++.||+.|..+.
T Consensus        67 EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~  145 (292)
T KOG4005|consen   67 EEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELK  145 (292)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhH
Confidence            7899999999999999999999999999999999999999999999999999999999999999999999998876653

>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]

Probab=99.19  E-value=3e-11  Score=127.69  Aligned_cols=70  Identities=36%  Similarity=0.424  Sum_probs=67.4

Q ss_pred             CCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          227 GLDSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILK  296 (448)
Q Consensus       227 ~~d~~d~KR~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lk  296 (448)
                      .+|++-.||+.|||+|||||..||+|||+|+..||.+++.|..||+.|+++...|++++..++.||.+||
T Consensus       274 ~~d~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~k  343 (655)
T KOG4343|consen  274 GSDIKVLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLK  343 (655)
T ss_pred             ccCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCcccc
Confidence            4677889999999999999999999999999999999999999999999999999999999999999996

>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization

Probab=98.97  E-value=3.6e-09  Score=81.04  Aligned_cols=51  Identities=39%  Similarity=0.629  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQ  283 (448)
Q Consensus       232 d~KR~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q  283 (448)
                      ++++.||+ +||++|++||.||++++.+|+.+|..|+.+|..|..++..|.+
T Consensus         3 ~~~~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~   53 (54)
T PF07716_consen    3 EEKRERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLER   53 (54)
T ss_dssp             HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            67888888 9999999999999999999999999999999999998887654

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....

>KOG0709 consensus CREB/ATF family transcription factor [Transcription]

Probab=98.95  E-value=1e-09  Score=115.00  Aligned_cols=73  Identities=33%  Similarity=0.433  Sum_probs=67.2

Q ss_pred             chHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          230 SVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMA  309 (448)
Q Consensus       230 ~~d~KR~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~a  309 (448)
                      +...||.||+|+|.+||+.||+|||.|++.||.+|.....||++|.+++.       .|+.+|+.|-+|+..|++.+.+.
T Consensus       247 EriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~-------~Le~~N~sLl~qL~klQt~v~q~  319 (472)
T KOG0709|consen  247 ERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVE-------ELELSNRSLLAQLKKLQTLVIQV  319 (472)
T ss_pred             HHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHH-------HHhhccHHHHHHHHHHHHHHhhc
Confidence            34679999999999999999999999999999999999999999988887       57899999999999999988773

>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]

Probab=98.92  E-value=1.9e-09  Score=107.66  Aligned_cols=58  Identities=29%  Similarity=0.512  Sum_probs=53.0

Q ss_pred             CchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          229 DSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYD  286 (448)
Q Consensus       229 d~~d~KR~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~  286 (448)
                      +..-.||+-|++||||+||.+|+|||+|++.||.+|..|+.+|..|-++|..|.+-|.
T Consensus       286 ee~trKRevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtLKeLYc  343 (348)
T KOG3584|consen  286 EEATRKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTLKELYC  343 (348)
T ss_pred             hhhhhHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHhh
Confidence            3446888999999999999999999999999999999999999999999998887664

>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]

Probab=98.03  E-value=1.7e-05  Score=78.74  Aligned_cols=49  Identities=29%  Similarity=0.457  Sum_probs=42.2

Q ss_pred             HHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          232 DDKRARR-MLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTD  280 (448)
Q Consensus       232 d~KR~RR-mlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~  280 (448)
                      |..|..| .++|||.|.+||.||.+||..||.+|..|..+|..|...+..
T Consensus       203 e~~kleRkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~  252 (279)
T KOG0837|consen  203 EKIKLERKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSK  252 (279)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHH
Confidence            4444444 799999999999999999999999999999999888777664

>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell

Probab=98.01  E-value=1.2e-07  Score=79.86  Aligned_cols=59  Identities=37%  Similarity=0.501  Sum_probs=48.8

Q ss_pred             hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          231 VDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESA  289 (448)
Q Consensus       231 ~d~KR~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~  289 (448)
                      .+.|.+||.++||.+|++||.||..++.+|+.++..|+.+...|..++..+.+.+..+.
T Consensus        27 ~~lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~l~~e~~~lk   85 (92)
T PF03131_consen   27 AELKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSELRQERDELK   85 (92)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36799999999999999999999999999999999888877777777666555444433

MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.

>KOG4196 consensus bZIP transcription factor MafK [Transcription]

Probab=96.97  E-value=0.0065  Score=55.29  Aligned_cols=65  Identities=23%  Similarity=0.359  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAE  310 (448)
Q Consensus       232 d~KR~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE  310 (448)
                      -.|.+||-++||=-|+-+|-|+.++-.+||.+...|..|..              .|..||..++.++..|+.|++.+.
T Consensus        51 rlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~--------------~L~~e~s~~~~E~da~k~k~e~l~  115 (135)
T KOG4196|consen   51 RLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVE--------------KLKEENSRLRRELDAYKSKYEALQ  115 (135)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56888899999999999999999888777776655444433              455666677777777777665443

>KOG4571 consensus Activating transcription factor 4 [Transcription]

Probab=96.84  E-value=0.017  Score=58.69  Aligned_cols=52  Identities=23%  Similarity=0.349  Sum_probs=41.9

Q ss_pred             HHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          232 DDKRARR-MLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQ  283 (448)
Q Consensus       232 d~KR~RR-mlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q  283 (448)
                      +.|+.|| .+.|..+|-|=|+||++..++|+.++..|+.+|.+|+.++..+.+
T Consensus       224 ~~~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~ler  276 (294)
T KOG4571|consen  224 PEKKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELER  276 (294)
T ss_pred             chHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555555 455555699999999999999999999999999999988875443

>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]

Probab=96.69  E-value=0.0069  Score=60.47  Aligned_cols=45  Identities=22%  Similarity=0.399  Sum_probs=37.8

Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          236 ARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTD  280 (448)
Q Consensus       236 ~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~  280 (448)
                      .-|.-+|=+++||||.+.++...++..+|..|+.||..|+.++..
T Consensus       196 ~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~  240 (269)
T KOG3119|consen  196 KERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQ  240 (269)
T ss_pred             HHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344457889999999999999999999999998888888777764

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=96.43  E-value=0.052  Score=44.75  Aligned_cols=61  Identities=21%  Similarity=0.221  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKR  315 (448)
Q Consensus       255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~R  315 (448)
                      +-++.||.+|..+-.....|..++..|.++...+..+|..|+.+...|+.......+.++-
T Consensus         4 E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~   64 (72)
T PF06005_consen    4 ELLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRS   64 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4578899999988888888888888888888888888888888888887766665544443

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]

Probab=96.25  E-value=0.0084  Score=65.86  Aligned_cols=64  Identities=25%  Similarity=0.341  Sum_probs=50.2

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          235 RARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK  305 (448)
Q Consensus       235 R~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~k  305 (448)
                      =+||.=|||.+|+++|+||...|..||.+|..|+.|-.+|+++-.       .+...=.+++.++..|-.+
T Consensus       491 DIRRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er~-------~~d~~L~~~kqqls~L~~~  554 (604)
T KOG3863|consen  491 DIRRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRERD-------ELDSTLGVMKQQLSELYQE  554 (604)
T ss_pred             ccccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence            356788999999999999999999999999999999888876644       3344445566666666444

>TIGR02449 conserved hypothetical protein TIGR02449

Probab=96.25  E-value=0.048  Score=44.38  Aligned_cols=61  Identities=21%  Similarity=0.160  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 013166          257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGLN  320 (448)
Q Consensus       257 LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~~ln  320 (448)
                      +..|+.+|.+|-.....|+.++..|.++...+..|++.|..+++.-|.||   |.++.||.++.
T Consensus         2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rv---EamI~RLk~le   62 (65)
T TIGR02449         2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKV---EAMITRLKALE   62 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhhhc
Confidence            56677777777777777777777777777778888888887777777664   45677776653

Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.

>PRK10884 SH3 domain-containing protein; Provisional

Probab=95.79  E-value=0.11  Score=50.38  Aligned_cols=63  Identities=11%  Similarity=0.173  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013166          255 AHLNELETQAGQLRA----EHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVT  317 (448)
Q Consensus       255 ~~LeeLE~qV~~Le~----ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~  317 (448)
                      +.+++|+.++..+..    +...|..++....+.+..|..+|..|+.++..++.++..++...+++.
T Consensus       100 ~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~  166 (206)
T PRK10884        100 NQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQ  166 (206)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444443333    334445555555666666777777777777777777766665555554

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=95.79  E-value=0.079  Score=49.88  Aligned_cols=57  Identities=14%  Similarity=0.205  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 013166          263 QAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGL  319 (448)
Q Consensus       263 qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~~l  319 (448)
                      ....|+.||..|..++..|++++..|..||..|..++..+....+++-.+++|.+.+
T Consensus        98 ~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RARkl  154 (161)
T TIGR02894        98 SDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRARKL  154 (161)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            477888999999999999999999999999999999999999988888888887754

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division []

Probab=95.41  E-value=0.16  Score=42.12  Aligned_cols=61  Identities=23%  Similarity=0.312  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013166          257 LNELETQAGQLRAEHSSLLKGLTDVNQKYD--------ESAVNNRILKADIETLRAKVKMAEETVKRVT  317 (448)
Q Consensus       257 LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~--------~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~  317 (448)
                      |.+.+.+++.|+.||=.|+-+|-.|.+++.        .+..+|-.||.++..|++.|+.....+..+.
T Consensus         2 lrEqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~   70 (75)
T PF07989_consen    2 LREQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLKEAE   70 (75)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            568899999999999999999999998877        3577999999999999999888877766543

>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication

Probab=95.40  E-value=0.097  Score=46.07  Aligned_cols=53  Identities=26%  Similarity=0.370  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEE  311 (448)
Q Consensus       259 eLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~  311 (448)
                      +|=.++..|+.....|..++..|+.+...+..||..|+.+...||.+|...+.
T Consensus         5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~   57 (107)
T PF06156_consen    5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ   57 (107)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            34455666666666666666666777777778888888888888877766554

SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.

>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []

Probab=95.32  E-value=0.051  Score=41.09  Aligned_cols=42  Identities=24%  Similarity=0.444  Sum_probs=35.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          266 QLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVK  307 (448)
Q Consensus       266 ~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk  307 (448)
                      +|+.+...|+.....|...|..|..||..|++++..|..++.
T Consensus         2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~   43 (45)
T PF02183_consen    2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ   43 (45)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            577788888888888888888888889999988888877764

; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>TIGR02449 conserved hypothetical protein TIGR02449

Probab=94.76  E-value=0.27  Score=40.10  Aligned_cols=57  Identities=16%  Similarity=0.194  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEE  311 (448)
Q Consensus       255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~  311 (448)
                      +.++.|-....+|+.||..|+.++..+...-..|...|..=+.+|+.|=.+|+.+|.
T Consensus         7 ~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~leq   63 (65)
T TIGR02449         7 AQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALEQ   63 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence            457778888888888888888888888888888888888888888888888777663

Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.

>PRK13169 DNA replication intiation control protein YabA; Reviewed

Probab=94.70  E-value=0.2  Score=44.47  Aligned_cols=51  Identities=22%  Similarity=0.292  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMA  309 (448)
Q Consensus       259 eLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~a  309 (448)
                      +|=.++..|+.....|..++..|.+....+..||..|+.+...||.+|...
T Consensus         5 elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~   55 (110)
T PRK13169          5 EIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL   55 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            444556666666666666666666666677777777777777777776654

>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89

Probab=94.60  E-value=0.35  Score=39.59  Aligned_cols=55  Identities=18%  Similarity=0.274  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKM  308 (448)
Q Consensus       254 q~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~  308 (448)
                      +.+++-|..+++..+.+|..|..+-.....++..+-.+|..|+++++.|+++|..
T Consensus        11 r~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~   65 (69)
T PF14197_consen   11 RNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEE   65 (69)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567778888888888888888888888888888888888888888888877654

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=94.57  E-value=0.28  Score=46.44  Aligned_cols=68  Identities=16%  Similarity=0.166  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADI  299 (448)
Q Consensus       232 d~KR~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql  299 (448)
                      ..++++.+...+..-+.-.......+.++..-+..|..|...|.-++..+.+++..+..||+.|-.+.
T Consensus       114 ~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rw  181 (194)
T PF08614_consen  114 KERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERW  181 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444555555555555555555555555555555555555555554444

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=94.52  E-value=0.69  Score=50.92  Aligned_cols=83  Identities=18%  Similarity=0.288  Sum_probs=66.5

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          234 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETV  313 (448)
Q Consensus       234 KR~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v  313 (448)
                      |....+++-..........-+.+++.|+.++...+.++..|..+...+......+..|+..|+.+..+++.++..+|+.+
T Consensus       150 kE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi  229 (546)
T PF07888_consen  150 KEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDI  229 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445667777777777777788888888888888888888888888888888888899999888888888888887666


Q ss_pred             HHH
Q 013166          314 KRV  316 (448)
Q Consensus       314 ~Rl  316 (448)
                      .-+
T Consensus       230 ~~l  232 (546)
T PF07888_consen  230 KTL  232 (546)
T ss_pred             HHH
Confidence            554

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication

Probab=94.52  E-value=0.19  Score=44.29  Aligned_cols=50  Identities=30%  Similarity=0.414  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA  304 (448)
Q Consensus       255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~  304 (448)
                      ..+.+||.++..|-.+...|+.++..+.++...|..||..||..+.++..
T Consensus         8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~   57 (107)
T PF06156_consen    8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ   57 (107)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            56889999999999999999999999999999999999999999999876

SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=94.40  E-value=0.64  Score=38.36  Aligned_cols=54  Identities=13%  Similarity=0.226  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMA  309 (448)
Q Consensus       256 ~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~a  309 (448)
                      .+..+-..+..|+.|+..|+.+...+.+....|..+|..|+.+-.....+|..+
T Consensus        12 ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~L   65 (72)
T PF06005_consen   12 KIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSL   65 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345556667777777777777777777888888888888888888887777654

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.37  E-value=0.3  Score=40.64  Aligned_cols=53  Identities=13%  Similarity=0.282  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKM  308 (448)
Q Consensus       256 ~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~  308 (448)
                      -+.=|.-+|..|+.+|..|..+...+++....|..+|..||.+-...+.+|..
T Consensus        19 TI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrs   71 (79)
T COG3074          19 TITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRA   71 (79)
T ss_pred             HHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556778889999999999999999999999999999999988887665543

>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional

Probab=94.30  E-value=0.1  Score=56.32  Aligned_cols=48  Identities=19%  Similarity=0.271  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL  302 (448)
Q Consensus       255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~L  302 (448)
                      ..+++||.+++.|+.|.+.|.++..++++++..++.||..|+++++.+
T Consensus        76 ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~  123 (475)
T PRK13729         76 VTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKAL  123 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence            467899999999999999999999999999999999999999998554

>PRK13169 DNA replication intiation control protein YabA; Reviewed

Probab=94.28  E-value=0.22  Score=44.21  Aligned_cols=50  Identities=28%  Similarity=0.383  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA  304 (448)
Q Consensus       255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~  304 (448)
                      ..+..||.++..|-.+...|+.++..+.++...|..||..||..+.++..
T Consensus         8 d~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~~   57 (110)
T PRK13169          8 DALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELEA   57 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            46789999999999999999999999999999999999999999999844

>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]

Probab=94.25  E-value=0.17  Score=45.12  Aligned_cols=50  Identities=24%  Similarity=0.300  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKM  308 (448)
Q Consensus       259 eLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~  308 (448)
                      ++=.+|..|+.....|.+++..+.+++..+..||..|+-+.+.||.+|..
T Consensus         5 eiFd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~   54 (114)
T COG4467           5 EIFDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE   54 (114)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence            34456777777778888888888899999999999999999999998877

>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids []

Probab=93.59  E-value=1.1  Score=37.05  Aligned_cols=60  Identities=15%  Similarity=0.336  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013166          258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVT  317 (448)
Q Consensus       258 eeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~  317 (448)
                      ..||.-=+..+..-......+..++..+.....+|..|++++..|..+|..+.+.+.||.
T Consensus        10 ~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rLs   69 (70)
T PF04899_consen   10 SALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLERLS   69 (70)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            333333344455566677778888888888899999999999999999999999999885

>PRK10884 SH3 domain-containing protein; Provisional

Probab=93.56  E-value=1.3  Score=43.09  Aligned_cols=52  Identities=6%  Similarity=0.066  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV  306 (448)
Q Consensus       255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kL  306 (448)
                      ++..+|+.++..+..+...|..++..|++++..+..+++.|++++..++..+
T Consensus       118 ~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~  169 (206)
T PRK10884        118 QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTI  169 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444455555555444444555555555555555566666666666655443

>PRK11637 AmiB activator; Provisional

Probab=93.53  E-value=1.6  Score=45.92  Aligned_cols=57  Identities=18%  Similarity=0.140  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          249 SRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK  305 (448)
Q Consensus       249 SR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~k  305 (448)
                      -...-...+..|+.++..++.+...+..++..+++++..+..+=..|+.++..++..
T Consensus        69 ~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~  125 (428)
T PRK11637         69 QRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERL  125 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344445555555555555555555555555555555544444444444444333

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=93.04  E-value=2  Score=40.66  Aligned_cols=69  Identities=25%  Similarity=0.415  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q 013166          254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGLNPL  322 (448)
Q Consensus       254 q~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~~ln~~  322 (448)
                      ...+...+.++..|+.++..|..++..+...+......|..|+.++..|+-.+.++|+...+|..-|.-
T Consensus       108 ~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~  176 (194)
T PF08614_consen  108 EKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRE  176 (194)
T ss_dssp             ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344556666677777777777777777777777777777777777777777777777777777666643

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=93.01  E-value=2.7  Score=37.98  Aligned_cols=75  Identities=21%  Similarity=0.406  Sum_probs=36.1

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          235 RARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVK  314 (448)
Q Consensus       235 R~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~  314 (448)
                      +..|=...||..-....++...++.|+..+..|+.++..+..++..+..+...       |+.++..+...++...+.+.
T Consensus        46 ~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~-------l~~~~~~~~~~~k~~kee~~  118 (151)
T PF11559_consen   46 QRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQ-------LQKQLKSLEAKLKQEKEELQ  118 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence            33344445555555555555555555555555555555555544444444433       33344444444444444444


Q ss_pred             HH
Q 013166          315 RV  316 (448)
Q Consensus       315 Rl  316 (448)
                      |+
T Consensus       119 kl  120 (151)
T PF11559_consen  119 KL  120 (151)
T ss_pred             HH
Confidence            44

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=92.98  E-value=3.7  Score=37.11  Aligned_cols=68  Identities=16%  Similarity=0.249  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          249 SRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRV  316 (448)
Q Consensus       249 SR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl  316 (448)
                      +|.|-..+.++|..++..|+.++..|...+..|..++..+..+...+..+...|..+++.++...+..
T Consensus        46 ~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~  113 (151)
T PF11559_consen   46 QRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQE  113 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555566666666666666666666666666666666666666666666666666666555544

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=92.60  E-value=1.6  Score=37.02  Aligned_cols=38  Identities=13%  Similarity=0.158  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRI  294 (448)
Q Consensus       257 LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~  294 (448)
                      ++.||.+|.+.-....-|.-++..|.++...+..++..
T Consensus         6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~   43 (79)
T PRK15422          6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQN   43 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566665554444444444444444444444443333

>PRK11637 AmiB activator; Provisional

Probab=92.31  E-value=2.2  Score=44.85  Aligned_cols=72  Identities=17%  Similarity=0.168  Sum_probs=45.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          242 NRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETV  313 (448)
Q Consensus       242 NRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v  313 (448)
                      ..+....-....+..+.+++.++..|..+...+..++..+++++..+..+=..|..++..+++++...++.+
T Consensus        55 qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l  126 (428)
T PRK11637         55 DIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLL  126 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444445556666666677777777777777777777777777766777777777777766654443

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=92.17  E-value=2.4  Score=41.52  Aligned_cols=17  Identities=18%  Similarity=0.208  Sum_probs=6.2

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 013166          261 ETQAGQLRAEHSSLLKG  277 (448)
Q Consensus       261 E~qV~~Le~ENs~L~~q  277 (448)
                      +.+++.|+.+|..|...
T Consensus        62 ~~e~e~L~~~~~~l~~~   78 (251)
T PF11932_consen   62 EREIENLEVYNEQLERQ   78 (251)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33333333333333333

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=92.00  E-value=1.2  Score=37.81  Aligned_cols=52  Identities=15%  Similarity=0.293  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVK  307 (448)
Q Consensus       256 ~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk  307 (448)
                      -+.=|..+|+.|+.+|..|..++..+......|..+|..||.+-.....+|.
T Consensus        19 tI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr   70 (79)
T PRK15422         19 TITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQ   70 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455667788888888888888888777788888888888888877765543

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=91.62  E-value=4.9  Score=40.24  Aligned_cols=52  Identities=19%  Similarity=0.297  Sum_probs=39.1

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          233 DKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQK  284 (448)
Q Consensus       233 ~KR~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~  284 (448)
                      .+-.+++..-.+.+++.=.-++..+++|+.+|.+++.+.+.++.++..++.+
T Consensus        30 ~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~k   81 (239)
T COG1579          30 RKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEK   81 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555666666777777777788888888888888888888888877776643

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=91.57  E-value=2.3  Score=47.47  Aligned_cols=83  Identities=20%  Similarity=0.334  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHh-hcchhhhhc-cC
Q 013166          254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRIL---KADIETLRAKVKMAEETVKRVT-GLNPLLLAR-SD  328 (448)
Q Consensus       254 q~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~L---kaql~~Lr~kLk~aE~~v~Rl~-~ln~~l~~~-~~  328 (448)
                      +.+..+|+.++..|+.++..|..++..+..+...-.-.++.+   ..++..|+.+|......|+.|. .|+.+.... .+
T Consensus       435 ~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k~~~lE  514 (652)
T COG2433         435 EEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELRKMRKLE  514 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            345677777777777888888887777776655444444433   3556666666666555555553 233333222 24


Q ss_pred             CCCCCCCC
Q 013166          329 VPGVGMPL  336 (448)
Q Consensus       329 ~~~~~~p~  336 (448)
                      .+|-++|+
T Consensus       515 ~sG~g~pv  522 (652)
T COG2433         515 LSGKGTPV  522 (652)
T ss_pred             hcCCCcce
Confidence            55666665

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=91.47  E-value=1.4  Score=40.58  Aligned_cols=49  Identities=27%  Similarity=0.345  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          255 AHLNELETQAGQLRAEHSSLLKGL--TDVNQKYDESAVNNRILKADIETLR  303 (448)
Q Consensus       255 ~~LeeLE~qV~~Le~ENs~L~~ql--~~l~q~~~~L~~EN~~Lkaql~~Lr  303 (448)
                      ..+.+|+.++..|+.|...|...+  .+|......+..|+..|..++..|+
T Consensus        86 ~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~  136 (169)
T PF07106_consen   86 EELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLR  136 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444433  2333444444444444444444444

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=91.14  E-value=2.2  Score=39.11  Aligned_cols=19  Identities=21%  Similarity=0.513  Sum_probs=10.3

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 013166          297 ADIETLRAKVKMAEETVKR  315 (448)
Q Consensus       297 aql~~Lr~kLk~aE~~v~R  315 (448)
                      ..++.|.+++.++|+.+.+
T Consensus        73 ~~~E~l~rriq~LEeele~   91 (143)
T PF12718_consen   73 SNAEQLNRRIQLLEEELEE   91 (143)
T ss_pred             HhHHHHHhhHHHHHHHHHH
Confidence            3444566666665555544

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=91.08  E-value=7.1  Score=37.66  Aligned_cols=58  Identities=29%  Similarity=0.379  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESA  289 (448)
Q Consensus       232 d~KR~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~  289 (448)
                      +....++.+.+-+.-+.+-..-+.++..++.++..|+-|+..|..++..+.+....|.
T Consensus        70 e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~  127 (201)
T PF13851_consen   70 EVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELY  127 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5556677888888888887777888888888888888888888888887777666553

>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family

Probab=90.77  E-value=1.5  Score=47.59  Aligned_cols=61  Identities=20%  Similarity=0.348  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESA-VNNRILKADIETLRAKVKMAEETVKRV  316 (448)
Q Consensus       256 ~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~-~EN~~Lkaql~~Lr~kLk~aE~~v~Rl  316 (448)
                      ++..|+.+-+.|+.||+.|+++...+.+++.... .+...|..+.+.|..++..++..++.|
T Consensus        74 ~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l  135 (472)
T TIGR03752        74 RLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQL  135 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4577888888899999999888888888877644 677778777777777666655444443

Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=90.70  E-value=2.6  Score=42.21  Aligned_cols=50  Identities=24%  Similarity=0.334  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV  306 (448)
Q Consensus       257 LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kL  306 (448)
                      ++++..+...|..++..|..++..++.++..+..||..|......|--++
T Consensus       144 l~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev  193 (290)
T COG4026         144 LEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEV  193 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHH
Confidence            44444444445555555555555555555566666666554444433333

>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89

Probab=90.56  E-value=2  Score=35.20  Aligned_cols=52  Identities=19%  Similarity=0.277  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013166          267 LRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTG  318 (448)
Q Consensus       267 Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~~  318 (448)
                      |+.++..|+.++..+.+++.....+|..|+.+-.....+|.++-..+..|..
T Consensus         3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~   54 (69)
T PF14197_consen    3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKE   54 (69)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555555555555555555555555555555555555555444444443

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=90.55  E-value=1.9  Score=43.10  Aligned_cols=64  Identities=22%  Similarity=0.322  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          253 KQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRV  316 (448)
Q Consensus       253 Kq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl  316 (448)
                      =+...+++..+++.+..|+..|.++++.++.+|..+...=..|+.+...|..+++.+...|-+|
T Consensus       133 ~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L  196 (290)
T COG4026         133 LKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDL  196 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHH
Confidence            3456678888888888899999998888888877777666666666666666666655555444

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=90.54  E-value=4  Score=36.40  Aligned_cols=57  Identities=18%  Similarity=0.246  Sum_probs=39.1

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          234 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAV  290 (448)
Q Consensus       234 KR~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~  290 (448)
                      -+.+-+..-.|..+-|+..=.+.-++|+..+..|+.++.++.+++.+|+.++..+..
T Consensus        16 n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~   72 (107)
T PF09304_consen   16 NRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARR   72 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345556666777777777666666777777777777777777777777766666544

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6

Probab=90.45  E-value=5.1  Score=34.14  Aligned_cols=77  Identities=19%  Similarity=0.313  Sum_probs=37.6

Q ss_pred             HHHHhhHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHH
Q 013166          238 RMLSNRESARRSRRRKQ------AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDE----------SAVNNRILKADIET  301 (448)
Q Consensus       238 RmlsNRESARRSR~RKq------~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~----------L~~EN~~Lkaql~~  301 (448)
                      .+..|.+.-+.+-.+|.      ..+-+|..+...|..+-..|+.+-..+..++..          +..+=..|+.++..
T Consensus         6 ~ir~n~e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~   85 (108)
T PF02403_consen    6 LIRENPEEVRENLKKRGGDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKE   85 (108)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHH
T ss_pred             HHHhCHHHHHHHHHHcCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHH
Confidence            33446666666555553      334444444455555555555544444444443          44444445555555


Q ss_pred             HHHHHHHHHHHHH
Q 013166          302 LRAKVKMAEETVK  314 (448)
Q Consensus       302 Lr~kLk~aE~~v~  314 (448)
                      |..++..+++.+.
T Consensus        86 le~~~~~~e~~l~   98 (108)
T PF02403_consen   86 LEEQLKELEEELN   98 (108)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            5555555444433

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=90.21  E-value=5.3  Score=39.11  Aligned_cols=22  Identities=18%  Similarity=0.294  Sum_probs=8.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 013166          258 NELETQAGQLRAEHSSLLKGLT  279 (448)
Q Consensus       258 eeLE~qV~~Le~ENs~L~~ql~  279 (448)
                      +++..+...|..+...|..++.
T Consensus        45 d~~~~e~~~L~~e~~~l~~e~e   66 (251)
T PF11932_consen   45 DQWDDEKQELLAEYRQLEREIE   66 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344444333333333333

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.11  E-value=2.6  Score=42.79  Aligned_cols=62  Identities=23%  Similarity=0.327  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          250 RRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEE  311 (448)
Q Consensus       250 R~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~  311 (448)
                      -..+...+.+|+..+..++.+...|..++..+..+...+..++..+++++..|..++..+++
T Consensus        33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~   94 (265)
T COG3883          33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKE   94 (265)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556778888899999999999999999999999999999999999999999888888753

>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function

Probab=90.05  E-value=1.6  Score=45.82  Aligned_cols=56  Identities=20%  Similarity=0.260  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          249 SRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA  304 (448)
Q Consensus       249 SR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~  304 (448)
                      -=+|-+.+...||.-+.+++.||..|..+++.+.+++.+.+.|+..|..++.+-.+
T Consensus       121 vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~la  176 (401)
T PF06785_consen  121 VFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALA  176 (401)
T ss_pred             HHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHH
Confidence            44677788888999999999999999999999999999999999988666655433

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=90.04  E-value=2.3  Score=43.87  Aligned_cols=60  Identities=20%  Similarity=0.223  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013166          258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVT  317 (448)
Q Consensus       258 eeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~  317 (448)
                      -+|+.+++++..||..|...|......-..|.+|...|+.+..+...-|..+++.++.++
T Consensus       244 vdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~lR  303 (306)
T PF04849_consen  244 VDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKTLR  303 (306)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            334444444444444444444444444444444444444444444444455566666554

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PF13747 DUF4164: Domain of unknown function (DUF4164)

Probab=89.84  E-value=8.6  Score=32.81  Aligned_cols=71  Identities=20%  Similarity=0.257  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL  302 (448)
Q Consensus       232 d~KR~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~L  302 (448)
                      -.+|..+.+.+=|++=..|.-+.....+|+.+++.|....+.|..+|.....++..++.-|+.+...+...
T Consensus         9 al~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a   79 (89)
T PF13747_consen    9 ALTRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSA   79 (89)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            46788888888898888888888888999999999999999999999998888888888888776665554

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=89.74  E-value=4.1  Score=36.71  Aligned_cols=14  Identities=29%  Similarity=0.472  Sum_probs=6.6

Q ss_pred             HHHHHHHHHHHHHH
Q 013166          290 VNNRILKADIETLR  303 (448)
Q Consensus       290 ~EN~~Lkaql~~Lr  303 (448)
                      .++..|++++..|+
T Consensus        96 E~veEL~~Dv~DlK  109 (120)
T PF12325_consen   96 EEVEELRADVQDLK  109 (120)
T ss_pred             HHHHHHHHHHHHHH
Confidence            34444555444443

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana

Probab=89.52  E-value=7.7  Score=37.37  Aligned_cols=60  Identities=18%  Similarity=0.140  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVN  291 (448)
Q Consensus       232 d~KR~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~E  291 (448)
                      +.+-.+..|....+-+-.+.+.+.+...|+.++..-+.++..+..++..+.+++..+..+
T Consensus        87 nV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~  146 (190)
T PF05266_consen   87 NVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQ  146 (190)
T ss_pred             ccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence            566677777778888888888888888888888766444544444444444444444443

>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family

Probab=89.39  E-value=5.4  Score=36.77  Aligned_cols=72  Identities=18%  Similarity=0.131  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhccC
Q 013166          257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGLNPLLLARSD  328 (448)
Q Consensus       257 LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~~ln~~l~~~~~  328 (448)
                      ++.....+...+..+..+..+|..+......-..+-..|+.++....+.+...|..+.||...|.-|..+.+
T Consensus        28 ~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~lR~Wa~   99 (135)
T TIGR03495        28 LERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKRENEDLRRWAD   99 (135)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHhc
Confidence            444445566777777788888888877777777788889999999999999999999999999988887754

Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=89.17  E-value=6.7  Score=44.61  Aligned_cols=37  Identities=19%  Similarity=0.208  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          260 LETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILK  296 (448)
Q Consensus       260 LE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lk  296 (448)
                      +..+..+|+.|...|+.++...++++..++.|.+.|+
T Consensus       543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr  579 (697)
T PF09726_consen  543 CRQRRRQLESELKKLRRELKQKEEQIRELESELQELR  579 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455556666666666666655555555555554443

; GO: 0016021 integral to membrane

>KOG4005 consensus Transcription factor XBP-1 [Transcription]

Probab=88.81  E-value=5.8  Score=40.07  Aligned_cols=75  Identities=17%  Similarity=0.268  Sum_probs=53.3

Q ss_pred             hHHHHHHHHH-----HhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          231 VDDKRARRML-----SNRESARRSRRRKQ-AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA  304 (448)
Q Consensus       231 ~d~KR~RRml-----sNRESARRSR~RKq-~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~  304 (448)
                      .+.||.|-.+     +.|.-|   |+-+. ..+.||+.+-..|+.||..|+.+...|--+.+++..+=..|++++.+|..
T Consensus        70 ~~RrKLKNRVAAQtaRDrKKa---Rm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~  146 (292)
T KOG4005|consen   70 VQRRKLKNRVAAQTARDRKKA---RMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQ  146 (292)
T ss_pred             HHHHHHHHHHHHhhhhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHH
Confidence            3666666433     233333   33333 34678888888888888888888888888888888888888888888877


Q ss_pred             HHHH
Q 013166          305 KVKM  308 (448)
Q Consensus       305 kLk~  308 (448)
                      ...+
T Consensus       147 ~~~~  150 (292)
T KOG4005|consen  147 QQQH  150 (292)
T ss_pred             HHHH
Confidence            7655

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=88.80  E-value=13  Score=36.17  Aligned_cols=12  Identities=8%  Similarity=0.421  Sum_probs=4.7

Q ss_pred             HHHHHHHHHHHH
Q 013166          296 KADIETLRAKVK  307 (448)
Q Consensus       296 kaql~~Lr~kLk  307 (448)
                      +..+..++.++.
T Consensus       125 ~~~~~~~~~~l~  136 (302)
T PF10186_consen  125 QNELEERKQRLS  136 (302)
T ss_pred             HHHHHHHHHHHH
Confidence            333333444433

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PRK09039 hypothetical protein; Validated

Probab=88.72  E-value=5.3  Score=41.40  Aligned_cols=60  Identities=20%  Similarity=0.262  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHh
Q 013166          258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAE-ETVKRVT  317 (448)
Q Consensus       258 eeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE-~~v~Rl~  317 (448)
                      .+...+|..|+.|...|+.++..++..+..++.+.+..+.+++.|.++|..+- +.+..|.
T Consensus       133 se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~  193 (343)
T PRK09039        133 ARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELN  193 (343)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445566777777777777777777778888888888888888888777653 2244443

>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi

Probab=88.55  E-value=1.1  Score=35.10  Aligned_cols=50  Identities=30%  Similarity=0.419  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          252 RKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA  304 (448)
Q Consensus       252 RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~  304 (448)
                      |++.+|+||+.++..-+ |...+  .-....+.+..+..||+.|++++.-++.
T Consensus         1 kw~~Rl~ELe~klkaer-E~R~~--d~~~a~~rl~~l~~EN~~Lr~eL~~~r~   50 (52)
T PF12808_consen    1 KWLLRLEELERKLKAER-EARSL--DRSAARKRLSKLEGENRLLRAELERLRS   50 (52)
T ss_pred             CHHHHHHHHHHHHHHhH-HhccC--CchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            46778888887766533 22111  2234566777889999999999887753

In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].

>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure

Probab=88.45  E-value=3.2  Score=35.16  Aligned_cols=45  Identities=20%  Similarity=0.266  Sum_probs=35.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL  302 (448)
Q Consensus       258 eeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~L  302 (448)
                      ++|..++..|+.--..|..++..++..+..|..||..|..=|..|
T Consensus        19 ~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nL   63 (80)
T PF10224_consen   19 EELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNL   63 (80)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566777788888888888888888888888888888888777776

The exact function is unknown.

>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []

Probab=88.40  E-value=1.9  Score=32.61  Aligned_cols=39  Identities=28%  Similarity=0.371  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          273 SLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEE  311 (448)
Q Consensus       273 ~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~  311 (448)
                      +|......|...|..|..+|..|+.+.+.|+++|..+..
T Consensus         2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~   40 (45)
T PF02183_consen    2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKE   40 (45)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            466778899999999999999999999999988766543

; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=88.34  E-value=2.7  Score=38.77  Aligned_cols=51  Identities=25%  Similarity=0.354  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Q 013166          257 LNELETQAGQLRAEHSSLLKGLTDVNQKY--DESAVNNRILKADIETLRAKVK  307 (448)
Q Consensus       257 LeeLE~qV~~Le~ENs~L~~ql~~l~q~~--~~L~~EN~~Lkaql~~Lr~kLk  307 (448)
                      +.+|..++..|+.++..|..++..|....  .+|..+-..|+.++.+|..+|.
T Consensus        81 i~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~  133 (169)
T PF07106_consen   81 IKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLE  133 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56677777777777766666666655443  2233333334444444444333

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=88.22  E-value=3.6  Score=40.05  Aligned_cols=50  Identities=18%  Similarity=0.272  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKM  308 (448)
Q Consensus       259 eLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~  308 (448)
                      +|-..|..|+.-|..|..++..|...+..++..|..|..++..|+.++++
T Consensus         5 dL~~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s   54 (193)
T PF14662_consen    5 DLLSCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKS   54 (193)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444445555455554444444444445555555555555555554444

>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins

Probab=88.05  E-value=0.84  Score=43.29  Aligned_cols=46  Identities=17%  Similarity=0.276  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV  306 (448)
Q Consensus       257 LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kL  306 (448)
                      |+|+|.+.++--.+|.-|..+|+    +-..|..++++||.++.+|+..+
T Consensus         2 LeD~EsklN~AIERnalLE~ELd----EKE~L~~~~QRLkDE~RDLKqEl   47 (166)
T PF04880_consen    2 LEDFESKLNQAIERNALLESELD----EKENLREEVQRLKDELRDLKQEL   47 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHCH--------------
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence            78999999999999999999984    45678999999999999999888

Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.

>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins

Probab=87.79  E-value=5.5  Score=34.72  Aligned_cols=61  Identities=13%  Similarity=0.251  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          253 KQAHLNELETQAGQLRAEHSSLLKGLTDV--NQKYDESAVNNRILKADIETLRAKVKMAEETV  313 (448)
Q Consensus       253 Kq~~LeeLE~qV~~Le~ENs~L~~ql~~l--~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v  313 (448)
                      |+..++.|+.++......-+.|..++..+  .+.++.|..+=..++-++.+|+++++-....+
T Consensus        33 ~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~   95 (106)
T PF10805_consen   33 KREDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQL   95 (106)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            34555555555554444444444444444  44444444444444444555544444443333

The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=87.78  E-value=14  Score=38.04  Aligned_cols=69  Identities=20%  Similarity=0.344  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 013166          252 RKQAHLNELETQAGQLRAEHSSLLKGLTDVNQK-------YDESAVNNRILKADIETLRAKVKMAEETVKRVTGLN  320 (448)
Q Consensus       252 RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~-------~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~~ln  320 (448)
                      +..+.|++||.+...|..|...|..+...+.++       ++.+..+-..+..+...|..++..+.+.++||...|
T Consensus        61 ~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ktN  136 (314)
T PF04111_consen   61 ELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRKTN  136 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            334444555555555544444444444444332       333333333344555555556666666777776665

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=87.75  E-value=8.9  Score=43.04  Aligned_cols=56  Identities=21%  Similarity=0.353  Sum_probs=38.2

Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          240 LSNRESARRSRRRKQAHLNELETQAGQLR------------------------AEHSSLLKGLTDVNQKYDESAVNNRIL  295 (448)
Q Consensus       240 lsNRESARRSR~RKq~~LeeLE~qV~~Le------------------------~ENs~L~~ql~~l~q~~~~L~~EN~~L  295 (448)
                      +.|.+.--+--..+..+|.+||.++..++                        ..|..|+.+|..++..|..|.++|-.|
T Consensus       107 v~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~el  186 (617)
T PF15070_consen  107 VENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTNENMEL  186 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHh
Confidence            33444333333366777888877666444                        357888999999999999999998433

>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]

Probab=87.66  E-value=4.2  Score=40.21  Aligned_cols=60  Identities=12%  Similarity=0.191  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhc
Q 013166          267 LRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGLNPLLLAR  326 (448)
Q Consensus       267 Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~~ln~~l~~~  326 (448)
                      |+.||..+..++..++.+......+=..+..++.+|+.+.....++.+||..-|+-||..
T Consensus       149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~  208 (216)
T KOG1962|consen  149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQ  208 (216)
T ss_pred             hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence            333444444444444433333333333344444444444444455567776666666544

>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures

Probab=87.54  E-value=8.3  Score=31.80  Aligned_cols=60  Identities=22%  Similarity=0.258  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013166          258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVT  317 (448)
Q Consensus       258 eeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~  317 (448)
                      .+=..++.+|..|-..|..+.-.+...+..|...|..+..++..|..++..++..+..+.
T Consensus         8 ~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~   67 (74)
T PF12329_consen    8 AEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLE   67 (74)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344456666666666666666666666666666666666666666666666665555543

The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.

>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions []

Probab=87.53  E-value=17  Score=31.10  Aligned_cols=76  Identities=16%  Similarity=0.103  Sum_probs=62.8

Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Q 013166          236 ARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL---RAKVKMAEE  311 (448)
Q Consensus       236 ~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~L---r~kLk~aE~  311 (448)
                      ..+|...++..+..=..|+..+..||.++..|..|-..-.+++-.+.+....+..||+.|+.++..=   -.+|+..|.
T Consensus         5 L~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~~E~   83 (96)
T PF08647_consen    5 LVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKETEK   83 (96)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            4567777888888889999999999999999999999999999999999999999999998777653   334444443

>TIGR00219 mreC rod shape-determining protein MreC

Probab=87.18  E-value=2.2  Score=43.07  Aligned_cols=35  Identities=23%  Similarity=0.214  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Q 013166          263 QAGQLRAEHSSLLKGLTDVNQKYDE----SAVNNRILKA  297 (448)
Q Consensus       263 qV~~Le~ENs~L~~ql~~l~q~~~~----L~~EN~~Lka  297 (448)
                      .+.+|+.||.+|++++..+++++..    +..||.+||+
T Consensus        67 ~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~  105 (283)
T TIGR00219        67 DVNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRE  105 (283)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566777888888877766444333    4445554443

MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.

>PRK04406 hypothetical protein; Provisional

Probab=86.85  E-value=5.5  Score=33.08  Aligned_cols=44  Identities=9%  Similarity=0.200  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL  302 (448)
Q Consensus       259 eLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~L  302 (448)
                      .|+.++..|+....-+...+..|++-...-..+-..|+.++..|
T Consensus         8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L   51 (75)
T PRK04406          8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYV   51 (75)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444433333333334444444444

>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]

Probab=86.83  E-value=2.6  Score=37.79  Aligned_cols=47  Identities=23%  Similarity=0.310  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIET  301 (448)
Q Consensus       255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~  301 (448)
                      ..+.+||.++..|-.|...|++.+..+.+....|..||..||..+..
T Consensus         8 d~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~   54 (114)
T COG4467           8 DQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE   54 (114)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence            46789999999999999999999999999999999999999999988

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=86.81  E-value=52  Score=36.81  Aligned_cols=30  Identities=10%  Similarity=0.243  Sum_probs=16.9

Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          238 RMLSNRESARRSRRRKQAHLNELETQAGQL  267 (448)
Q Consensus       238 RmlsNRESARRSR~RKq~~LeeLE~qV~~L  267 (448)
                      .+..-|+..+.+....+..+.+|..++..+
T Consensus       354 q~~qEk~~l~~~~e~~k~~ie~L~~el~~~  383 (546)
T PF07888_consen  354 QWAQEKQALQHSAEADKDEIEKLSRELQML  383 (546)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            345555555555566666666666555433

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures

Probab=86.70  E-value=9  Score=31.59  Aligned_cols=64  Identities=22%  Similarity=0.316  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          252 RKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKR  315 (448)
Q Consensus       252 RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~R  315 (448)
                      -|-+.+..|..+-..|....-.+...+..|+.+...++.+...|+.+++.+..++..+++...+
T Consensus         9 EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~~   72 (74)
T PF12329_consen    9 EKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLKR   72 (74)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            3667888888888888888888888888888888888888888988888888888877765543

The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.

>PRK02119 hypothetical protein; Provisional

Probab=86.52  E-value=5.6  Score=32.82  Aligned_cols=24  Identities=21%  Similarity=0.185  Sum_probs=11.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          255 AHLNELETQAGQLRAEHSSLLKGL  278 (448)
Q Consensus       255 ~~LeeLE~qV~~Le~ENs~L~~ql  278 (448)
                      +++.+||.++..++.-...|...+
T Consensus         9 ~Ri~~LE~rla~QE~tie~LN~~v   32 (73)
T PRK02119          9 NRIAELEMKIAFQENLLEELNQAL   32 (73)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555555555444444443333

>PRK00888 ftsB cell division protein FtsB; Reviewed

Probab=86.45  E-value=2.6  Score=36.80  Aligned_cols=42  Identities=19%  Similarity=0.175  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          272 SSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETV  313 (448)
Q Consensus       272 s~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v  313 (448)
                      ..|.+++..++++...+..+|..|+.++..|+..-...|+.+
T Consensus        30 ~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~A   71 (105)
T PRK00888         30 WRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERA   71 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHH
Confidence            344455555555555566667777777777765444555443

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=86.44  E-value=25  Score=32.62  Aligned_cols=41  Identities=22%  Similarity=0.238  Sum_probs=17.4

Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          239 MLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLT  279 (448)
Q Consensus       239 mlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~  279 (448)
                      ...|++.+-+=-.-+++.+..|+.++..+..+...|...+.
T Consensus        36 ~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~   76 (140)
T PF10473_consen   36 SQENKECLILDAENSKAEIETLEEELEELTSELNQLELELD   76 (140)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444444444433333333

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function

Probab=86.28  E-value=3.8  Score=33.15  Aligned_cols=32  Identities=19%  Similarity=0.222  Sum_probs=20.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYD  286 (448)
Q Consensus       255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~  286 (448)
                      ++|.+||.++..++.-...|...+..-++++.
T Consensus         4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~   35 (69)
T PF04102_consen    4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQID   35 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56777777777777766666666554443333

It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.

>PRK05431 seryl-tRNA synthetase; Provisional

Probab=86.28  E-value=13  Score=39.60  Aligned_cols=61  Identities=18%  Similarity=0.320  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNN---RILKADIETLRAKVKMAEETVKRV  316 (448)
Q Consensus       256 ~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN---~~Lkaql~~Lr~kLk~aE~~v~Rl  316 (448)
                      .+-+|..+..+|..+...|+.+...+..++..+...+   ..|++++.+|+.+++.+|+..+.+
T Consensus        29 ~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~   92 (425)
T PRK05431         29 ELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDEL   92 (425)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555555555555555555555444322111   134555555555555555444443

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=86.26  E-value=6  Score=40.45  Aligned_cols=57  Identities=19%  Similarity=0.259  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEE  311 (448)
Q Consensus       255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~  311 (448)
                      ..|..|..++..+..+...+++++..++.++..+..+-..+.++..+|+..+..++.
T Consensus       209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~  265 (325)
T PF08317_consen  209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEK  265 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455566666666666666666666666666666666666666666666655555543

>PHA02562 46 endonuclease subunit; Provisional

Probab=85.35  E-value=15  Score=39.32  Aligned_cols=39  Identities=15%  Similarity=0.220  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILK  296 (448)
Q Consensus       258 eeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lk  296 (448)
                      ..|+.++..|+.++..+..++..+..++..+..+-..+.
T Consensus       361 ~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~  399 (562)
T PHA02562        361 KKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELV  399 (562)
T ss_pred             HHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444444444444444444444443

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=85.28  E-value=17  Score=39.26  Aligned_cols=70  Identities=24%  Similarity=0.318  Sum_probs=44.0

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          234 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAE  310 (448)
Q Consensus       234 KR~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE  310 (448)
                      |+++-+.++=+.-.++....++....|+.+++.|+.++..|..++..       ...++..++++|..+..++..++
T Consensus        38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~-------s~~~l~~~~~~I~~~~~~l~~l~  107 (420)
T COG4942          38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIE-------TADDLKKLRKQIADLNARLNALE  107 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhHHHHHHhhHHHHHHHHHHHH
Confidence            55565666655555566666666777777777777777777666664       45555555555555555555544

>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]

Probab=85.12  E-value=5.2  Score=40.24  Aligned_cols=58  Identities=10%  Similarity=0.159  Sum_probs=36.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEET  312 (448)
Q Consensus       255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~  312 (448)
                      +|.+-.++....++..-..=+.+..++.++...|+.||..||.+++.|++.+.-+.+.
T Consensus       194 ~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~  251 (269)
T KOG3119|consen  194 EYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRL  251 (269)
T ss_pred             HHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444445544444455556677777788888888888888887776655443

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=85.10  E-value=28  Score=31.19  Aligned_cols=65  Identities=20%  Similarity=0.215  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          246 ARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAE  310 (448)
Q Consensus       246 ARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE  310 (448)
                      .--||.-.+..+..|+..+..++..+..|.++-..|+.....|..+|..+-..+.+|+++|..+.
T Consensus         7 l~as~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~   71 (107)
T PF09304_consen    7 LEASQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEAR   71 (107)
T ss_dssp             -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33455556666677777777777777777776666776677777777777667777766665543

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function

Probab=84.98  E-value=28  Score=34.04  Aligned_cols=77  Identities=13%  Similarity=0.199  Sum_probs=57.7

Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          236 ARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEET  312 (448)
Q Consensus       236 ~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~  312 (448)
                      +-++..-.+-..|.-..-++++..|...+..-+.+-.....+-..++++...|..|.+.+++++..|+++|..++..
T Consensus       107 R~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q  183 (192)
T PF11180_consen  107 RAQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQ  183 (192)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566666666677777777888888888877777777777777777788888888888888888888777776644

>KOG4196 consensus bZIP transcription factor MafK [Transcription]

Probab=84.86  E-value=10  Score=35.06  Aligned_cols=66  Identities=14%  Similarity=0.146  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 013166          254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGLN  320 (448)
Q Consensus       254 q~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~~ln  320 (448)
                      ++.+-.|..+-..|+..--...+++..++|+ ++|+.+|..|.+|++.|+..+..+..+.+-+..-.
T Consensus        46 reEVvrlKQrRRTLKNRGYA~sCR~KRv~Qk-~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~  111 (135)
T KOG4196|consen   46 REEVVRLKQRRRTLKNRGYAQSCRVKRVQQK-HELEKEKAELQQQVEKLKEENSRLRRELDAYKSKY  111 (135)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455556666667777777777888777665 68999999999999999999888877777665444

>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function

Probab=84.84  E-value=14  Score=39.00  Aligned_cols=80  Identities=19%  Similarity=0.309  Sum_probs=53.6

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHH
Q 013166          233 DKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVN--------------QKYDESAVNNRILKAD  298 (448)
Q Consensus       233 ~KR~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~--------------q~~~~L~~EN~~Lkaq  298 (448)
                      .-|+|++.-|-|--|.-|.    -+++-+.+.++|+..|+.|..+|..++              .-...+..||..|+.+
T Consensus        74 q~kirk~~e~~eglr~i~e----s~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlq  149 (401)
T PF06785_consen   74 QTKIRKITEKDEGLRKIRE----SVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQ  149 (401)
T ss_pred             HHHHHHHHhccHHHHHHHH----HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHh
Confidence            3456666666666665553    344445556777778888777766544              3344567899999999


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 013166          299 IETLRAKVKMAEETVKRV  316 (448)
Q Consensus       299 l~~Lr~kLk~aE~~v~Rl  316 (448)
                      +.+|.+.++..|++..-|
T Consensus       150 L~~l~~e~~Ekeeesq~L  167 (401)
T PF06785_consen  150 LDALQQECGEKEEESQTL  167 (401)
T ss_pred             HHHHHHHHhHhHHHHHHH
Confidence            999988886665554443

>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]

Probab=84.66  E-value=0.049  Score=57.10  Aligned_cols=51  Identities=25%  Similarity=0.283  Sum_probs=44.1

Q ss_pred             CchHHHHHHHHHHhhHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 013166          229 DSVDDKRARRMLSNRESARR---SRRRKQAHLNELETQAGQLR-AEHSSLLKGLT  279 (448)
Q Consensus       229 d~~d~KR~RRmlsNRESARR---SR~RKq~~LeeLE~qV~~Le-~ENs~L~~ql~  279 (448)
                      ...+.|+..|+++|+..|.+   +|.||+.+...|..+|+.|+ .++..|..++.
T Consensus       149 ~~~~~~~~~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~l~~~is  203 (395)
T KOG1414|consen  149 PEPEEKRLLRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSPLSPQIS  203 (395)
T ss_pred             CcchHHHHhhccccccccCCCCCCccccccccccccchHhhcCCCCCcccCcccc
Confidence            45689999999999999999   99999999999999999999 77766554444

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=84.64  E-value=10  Score=35.22  Aligned_cols=46  Identities=24%  Similarity=0.367  Sum_probs=18.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR  303 (448)
Q Consensus       258 eeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr  303 (448)
                      .+++.++..++.....+...+....+++..+......+..++.+|+
T Consensus       105 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~  150 (191)
T PF04156_consen  105 QELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ  150 (191)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333444444444444444444444

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion

Probab=84.62  E-value=8.6  Score=36.80  Aligned_cols=61  Identities=18%  Similarity=0.218  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVK  314 (448)
Q Consensus       254 q~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~  314 (448)
                      ..+|++=..+...|..-|.-|+.+++........|..++..|+.+...|+.+|..-|....
T Consensus        66 l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~  126 (182)
T PF15035_consen   66 LIRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWR  126 (182)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456666677888888888888888888888888888888888888888888777665443

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=84.61  E-value=7.6  Score=37.85  Aligned_cols=41  Identities=15%  Similarity=0.217  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKAD  298 (448)
Q Consensus       258 eeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaq  298 (448)
                      ++|+..-..|..||..|...+..+.+....|..|+..|+.+
T Consensus        11 ~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q   51 (193)
T PF14662_consen   11 EDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQ   51 (193)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333344444443333333333333333333333333

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=84.59  E-value=14  Score=31.01  Aligned_cols=51  Identities=14%  Similarity=0.152  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK  305 (448)
Q Consensus       255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~k  305 (448)
                      +-++.||.+|++.-.-..-|.-++..|.++.+.|..|-..++...+.|+++
T Consensus         4 Ev~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~e   54 (79)
T COG3074           4 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERE   54 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHH
Confidence            346778888776555555555555555555555544444444444444444

>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=84.52  E-value=11  Score=40.82  Aligned_cols=55  Identities=18%  Similarity=0.213  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAE  310 (448)
Q Consensus       256 ~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE  310 (448)
                      ..+.|+.++++|+.||..|+..+..|...+..+..+-..+-.+++.||-++....
T Consensus       298 e~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq  352 (502)
T KOG0982|consen  298 EKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQ  352 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence            4566778899999999999999999999999999999888888888888776644

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=84.51  E-value=13  Score=40.19  Aligned_cols=45  Identities=18%  Similarity=0.278  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          246 ARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAV  290 (448)
Q Consensus       246 ARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~  290 (448)
                      .+..+.+=+.+|.+||.++..++.+.......+..+++++..+..
T Consensus        57 ~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~  101 (420)
T COG4942          57 QQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNA  101 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHH
Confidence            334444445566666666666666655555555554444444433

>PRK04325 hypothetical protein; Provisional

Probab=84.50  E-value=6.8  Score=32.36  Aligned_cols=24  Identities=21%  Similarity=0.144  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          256 HLNELETQAGQLRAEHSSLLKGLT  279 (448)
Q Consensus       256 ~LeeLE~qV~~Le~ENs~L~~ql~  279 (448)
                      ++.+||.++..++.-...|...+.
T Consensus        10 Ri~~LE~klAfQE~tIe~LN~vv~   33 (74)
T PRK04325         10 RITELEIQLAFQEDLIDGLNATVA   33 (74)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            366666666666655555544443

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=84.03  E-value=8.7  Score=34.63  Aligned_cols=9  Identities=22%  Similarity=0.567  Sum_probs=3.4

Q ss_pred             HHHHHHHHH
Q 013166          296 KADIETLRA  304 (448)
Q Consensus       296 kaql~~Lr~  304 (448)
                      +.++.+|+.
T Consensus        74 ~~el~~l~~   82 (120)
T PF12325_consen   74 EQELEELQQ   82 (120)
T ss_pred             HHHHHHHHH
Confidence            333333333

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]

Probab=83.93  E-value=18  Score=37.15  Aligned_cols=24  Identities=21%  Similarity=0.080  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          287 ESAVNNRILKADIETLRAKVKMAE  310 (448)
Q Consensus       287 ~L~~EN~~Lkaql~~Lr~kLk~aE  310 (448)
                      .|+-+|..+++..+.|++.+..+|
T Consensus        95 ~Leddlsqt~aikeql~kyiReLE  118 (333)
T KOG1853|consen   95 QLEDDLSQTHAIKEQLRKYIRELE  118 (333)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456666666666666666555443

>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules

Probab=83.93  E-value=11  Score=33.00  Aligned_cols=68  Identities=16%  Similarity=0.277  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhh
Q 013166          255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGLNPLL  323 (448)
Q Consensus       255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~~ln~~l  323 (448)
                      +.|.+++.+--.+...|.+|..++..+.++...-.. +-.++.++..++++++.......-+.+.-+.+
T Consensus        17 ~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~-~~~~~~~l~~~~~~lk~~r~~~~v~k~v~q~l   84 (106)
T PF05837_consen   17 EKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQRE-DEELSEKLEKLEKELKKSRQRWRVMKNVFQAL   84 (106)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555556666666666666655555444333 56677888888888887776655555543333

Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus

>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization

Probab=83.89  E-value=5.2  Score=31.38  Aligned_cols=36  Identities=19%  Similarity=0.388  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          276 KGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEE  311 (448)
Q Consensus       276 ~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~  311 (448)
                      ..+..|..++..|..+|..|+.++..|...+..+..
T Consensus        26 ~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~   61 (64)
T PF00170_consen   26 QYIEELEEKVEELESENEELKKELEQLKKEIQSLKS   61 (64)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            345556666666667777777666666666555543

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....

>PRK00846 hypothetical protein; Provisional

Probab=83.86  E-value=8.4  Score=32.46  Aligned_cols=48  Identities=17%  Similarity=0.169  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV  306 (448)
Q Consensus       259 eLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kL  306 (448)
                      +|+.++..|+....-...-+..|++.......+-..|+.++..|..||
T Consensus        10 ~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL   57 (77)
T PRK00846         10 ALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDL   57 (77)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444444444444445555555554333

>PRK09039 hypothetical protein; Validated

Probab=83.71  E-value=15  Score=38.07  Aligned_cols=59  Identities=12%  Similarity=0.147  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRV  316 (448)
Q Consensus       258 eeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl  316 (448)
                      ..|+.++..++.+..+...++..|++++..|..+...|.+.+..++++.+.++..++.+
T Consensus       119 ~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L  177 (343)
T PRK09039        119 GELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADL  177 (343)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444455555555555555555555555555555544444444443

>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases

Probab=83.68  E-value=6.8  Score=40.33  Aligned_cols=63  Identities=27%  Similarity=0.428  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013166          256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTG  318 (448)
Q Consensus       256 ~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~~  318 (448)
                      .+...+.++...+.+...|..++..|+.+|.....+...|..++.....+|..|+..+.-|.+
T Consensus       229 ~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~  291 (344)
T PF12777_consen  229 ELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSG  291 (344)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcc
Confidence            455566666677777777777888888888888888889999999888888888777665543

The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.

>PRK02793 phi X174 lysis protein; Provisional

Probab=83.63  E-value=7.9  Score=31.80  Aligned_cols=25  Identities=28%  Similarity=0.218  Sum_probs=13.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          255 AHLNELETQAGQLRAEHSSLLKGLT  279 (448)
Q Consensus       255 ~~LeeLE~qV~~Le~ENs~L~~ql~  279 (448)
                      ++|.+||.++..++.-...|...+.
T Consensus         8 ~Ri~~LE~~lafQe~tIe~Ln~~v~   32 (72)
T PRK02793          8 ARLAELESRLAFQEITIEELNVTVT   32 (72)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556666666665555555544443

>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]

Probab=83.15  E-value=11  Score=41.01  Aligned_cols=76  Identities=24%  Similarity=0.426  Sum_probs=49.6

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH
Q 013166          233 DKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDES--------AVNNRILKADIETLRA  304 (448)
Q Consensus       233 ~KR~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L--------~~EN~~Lkaql~~Lr~  304 (448)
                      .+..++|.+.-|.-+    |-.+.|++|+.++...+.|+....-+--+|+.+..++        -.||..++.+++.||.
T Consensus       241 kehv~km~kdle~Lq----~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~ea~rl~elreg~e~e~~rkelE~lR~  316 (575)
T KOG4403|consen  241 KEHVNKMMKDLEGLQ----RAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEAPRLSELREGVENETSRKELEQLRV  316 (575)
T ss_pred             HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHH
Confidence            344455555555443    3346677777777777777666555555555555522        3588888889999998


Q ss_pred             HHHHHHHH
Q 013166          305 KVKMAEET  312 (448)
Q Consensus       305 kLk~aE~~  312 (448)
                      .|+.||.+
T Consensus       317 ~L~kAEke  324 (575)
T KOG4403|consen  317 ALEKAEKE  324 (575)
T ss_pred             HHHHHHHH
Confidence            88887643

>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins

Probab=83.08  E-value=14  Score=32.15  Aligned_cols=55  Identities=15%  Similarity=0.221  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          255 AHLNELETQAGQLRAEHSSL--LKGLTDVNQKYDESAVNNRILKADIETLRAKVKMA  309 (448)
Q Consensus       255 ~~LeeLE~qV~~Le~ENs~L--~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~a  309 (448)
                      +.+.+++.++..++.+...|  ...+..|+-....+.-+=+.|.+++..+.+.+..+
T Consensus        42 ~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lL   98 (106)
T PF10805_consen   42 ERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLL   98 (106)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            33444445555555555554  45555555555555555566666666666666553

The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.

>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain

Probab=83.01  E-value=25  Score=34.41  Aligned_cols=94  Identities=14%  Similarity=0.109  Sum_probs=58.1

Q ss_pred             hHHHHHHHHHHhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HH-----
Q 013166          231 VDDKRARRMLSNRESARRSRRRKQA----HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESA----------VN-----  291 (448)
Q Consensus       231 ~d~KR~RRmlsNRESARRSR~RKq~----~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~----------~E-----  291 (448)
                      .-.+|.||....+.++=.-+-+=.+    +|...-.++..|+..|+.|...+.+|+.-+..|.          .|     
T Consensus        20 el~~rLR~~E~ek~~~m~~~g~lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdLCCFLDddRqKgrklarEWQrFG   99 (195)
T PF10226_consen   20 ELVRRLRRAEAEKMSLMVEHGRLMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDLCCFLDDDRQKGRKLAREWQRFG   99 (195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhHHHhHHHhHHHHHhh
Confidence            3467888888887777544433222    2222234455666666666666666654444332          22     


Q ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhh
Q 013166          292 ---NRILKADIETLRAKVKMAEETVKRVTGLNPLLL  324 (448)
Q Consensus       292 ---N~~Lkaql~~Lr~kLk~aE~~v~Rl~~ln~~l~  324 (448)
                         -.+++.++....+||+.+|..-+.|...|.-|.
T Consensus       100 ryta~vmr~eV~~Y~~KL~eLE~kq~~L~rEN~eLK  135 (195)
T PF10226_consen  100 RYTASVMRQEVAQYQQKLKELEDKQEELIRENLELK  135 (195)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence               346789999999999999877777777775543

Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=82.97  E-value=12  Score=34.31  Aligned_cols=56  Identities=20%  Similarity=0.286  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEE  311 (448)
Q Consensus       256 ~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~  311 (448)
                      ..+.|+.++..|+.++..+-.+|..|+.++..+..+=..|..++..+..++...+.
T Consensus        15 r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~   70 (143)
T PF12718_consen   15 RAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEK   70 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            34444555555555554444444444444444444444444444444444333333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus

Probab=82.90  E-value=4.8  Score=42.30  Aligned_cols=24  Identities=29%  Similarity=0.248  Sum_probs=10.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          265 GQLRAEHSSLLKGLTDVNQKYDES  288 (448)
Q Consensus       265 ~~Le~ENs~L~~ql~~l~q~~~~L  288 (448)
                      ..|+.||..|++++++|+.+...|
T Consensus        35 ~aLr~EN~~LKkEN~~Lk~eVerL   58 (420)
T PF07407_consen   35 FALRMENHSLKKENNDLKIEVERL   58 (420)
T ss_pred             hhHHHHhHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444

Members of this family are typically of around 420 residues in length. The function of this family is unknown.

>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility

Probab=82.77  E-value=22  Score=33.97  Aligned_cols=41  Identities=22%  Similarity=0.330  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKA  297 (448)
Q Consensus       257 LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lka  297 (448)
                      ..+|+.++..|+.++..|..++..+..++..+...+..+++
T Consensus       122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~  162 (189)
T PF10211_consen  122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQ  162 (189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56778888888888888888888887777777666555443

Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].

>smart00338 BRLZ basic region leucin zipper

Probab=82.73  E-value=5.2  Score=31.44  Aligned_cols=35  Identities=23%  Similarity=0.420  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          277 GLTDVNQKYDESAVNNRILKADIETLRAKVKMAEE  311 (448)
Q Consensus       277 ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~  311 (448)
                      .+..|..++..|..+|..|+.++..|+..+..+.+
T Consensus        27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~   61 (65)
T smart00338       27 EIEELERKVEQLEAENERLKKEIERLRRELEKLKS   61 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45556666667777777777777777766655543

>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana

Probab=82.70  E-value=31  Score=33.25  Aligned_cols=57  Identities=21%  Similarity=0.291  Sum_probs=32.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          260 LETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRV  316 (448)
Q Consensus       260 LE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl  316 (448)
                      |+.++..|+....+|+.+...+..+......|...|+..+..|...+..+|-.+..+
T Consensus       129 ~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~~~  185 (190)
T PF05266_consen  129 LESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQSV  185 (190)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444455566677777777777777776666555443

>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport

Probab=82.63  E-value=11  Score=32.32  Aligned_cols=42  Identities=17%  Similarity=0.228  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Q 013166          266 QLRAEHSSLLKGLTDVNQK------YDESAVNNRILKADIETLRAKVK  307 (448)
Q Consensus       266 ~Le~ENs~L~~ql~~l~q~------~~~L~~EN~~Lkaql~~Lr~kLk  307 (448)
                      .+..+|..|..++..|+.+      ......||-.|+.++..|+....
T Consensus        21 ~~~~e~~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~~f~~   68 (86)
T PF12711_consen   21 YLEEENEALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQSFYV   68 (86)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555666666665544      44678899999999999877653

The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.

>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length

Probab=82.53  E-value=9.2  Score=35.61  Aligned_cols=41  Identities=29%  Similarity=0.428  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 013166          267 LRAEHSSLLKGLTDVNQKYDESAV---NNRILKADIETLRAKVK  307 (448)
Q Consensus       267 Le~ENs~L~~ql~~l~q~~~~L~~---EN~~Lkaql~~Lr~kLk  307 (448)
                      +..+...|..+|.....++..|..   .|..|++++++|+.+.+
T Consensus        25 ~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~   68 (155)
T PF06810_consen   25 VKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNK   68 (155)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence            333333344444444433333333   45555555555554444

The function of this family is unknown.; GO: 0005198 structural molecule activity

>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility

Probab=82.53  E-value=18  Score=34.54  Aligned_cols=58  Identities=19%  Similarity=0.192  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhcch
Q 013166          264 AGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA-KVKMAEETVKRVTGLNP  321 (448)
Q Consensus       264 V~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~-kLk~aE~~v~Rl~~ln~  321 (448)
                      ...|+.++..|..++..|..+...+......+.....++++ ..+.-++.|+.+...|.
T Consensus       122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~  180 (189)
T PF10211_consen  122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQ  180 (189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555555555555555555555444443322 23334444444444443

Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].

>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants

Probab=82.52  E-value=12  Score=39.27  Aligned_cols=21  Identities=33%  Similarity=0.313  Sum_probs=14.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 013166          296 KADIETLRAKVKMAEETVKRV  316 (448)
Q Consensus       296 kaql~~Lr~kLk~aE~~v~Rl  316 (448)
                      |++|..|+.+|..++...+.+
T Consensus       193 K~KIR~lq~~L~~~~~~~~~~  213 (342)
T PF06632_consen  193 KAKIRELQRLLASAKEEEKSP  213 (342)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhccccch
Confidence            567777777777776654443

XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=82.48  E-value=20  Score=36.31  Aligned_cols=55  Identities=13%  Similarity=0.233  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          261 ETQAGQLRAEHSSLLKGLTDVNQKYDESAV-NNRILKADIETLRAKVKMAEETVKR  315 (448)
Q Consensus       261 E~qV~~Le~ENs~L~~ql~~l~q~~~~L~~-EN~~Lkaql~~Lr~kLk~aE~~v~R  315 (448)
                      +.++..++.+...+..++..++.++..+.. ....+..++..++.++..++..+.+
T Consensus       209 ~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~  264 (423)
T TIGR01843       209 QGELGRLEAELEVLKRQIDELQLERQQIEQTFREEVLEELTEAQARLAELRERLNK  264 (423)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333334444444444444333333222 1223334444555555555444443

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif

Probab=82.46  E-value=9.1  Score=33.90  Aligned_cols=40  Identities=18%  Similarity=0.214  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          270 EHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMA  309 (448)
Q Consensus       270 ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~a  309 (448)
                      .+..|..+|..-.+.+..+..||..|.=....|.+++..+
T Consensus        27 k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~L   66 (102)
T PF10205_consen   27 KNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVL   66 (102)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444443333333344444444433333343333333

This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.

>PF15294 Leu_zip: Leucine zipper

Probab=82.42  E-value=5.2  Score=40.92  Aligned_cols=45  Identities=18%  Similarity=0.316  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          260 LETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA  304 (448)
Q Consensus       260 LE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~  304 (448)
                      |..++..|+.||..|+.++..++.++....-|+..|.+++.+|+.
T Consensus       130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~  174 (278)
T PF15294_consen  130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD  174 (278)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445567777777777777777777777777777777777777766

>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family

Probab=82.36  E-value=8.3  Score=42.07  Aligned_cols=61  Identities=10%  Similarity=0.212  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAV-NNRILKADIETLRAKVKMAEETVKRV  316 (448)
Q Consensus       256 ~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~-EN~~Lkaql~~Lr~kLk~aE~~v~Rl  316 (448)
                      .+.+|+.++..|..+|..|+++++.|+++-..+.. =+..|...-.+|.++...+.+...++
T Consensus        67 ~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~  128 (472)
T TIGR03752        67 EVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQL  128 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            34455555555555555555555555444333322 22333333344444444444343333

Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.

>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]

Probab=82.30  E-value=0.61  Score=49.05  Aligned_cols=44  Identities=36%  Similarity=0.567  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLL  275 (448)
Q Consensus       232 d~KR~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~  275 (448)
                      +++++|=+.+||.+|-|+|.|||.....|+.+...+..+|..|.
T Consensus       283 ~~~~~~~lern~~aas~~r~~~k~~~~~~~~~~~~~~~~n~~l~  326 (395)
T KOG1414|consen  283 DERRRRFLERNRAAASRCRQKKKVWVLSLEKKAEELSSENGQLL  326 (395)
T ss_pred             hhhhhhhhhhhhhhhccccCCcccccccccccccchhhhhcccc
Confidence            34555558999999999999999999999999999888887775

>PRK05431 seryl-tRNA synthetase; Provisional

Probab=81.97  E-value=18  Score=38.61  Aligned_cols=59  Identities=24%  Similarity=0.370  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          258 NELETQAGQLRAEHSSLLKGLTDVNQ---KYDESAVNNRILKADIETLRAKVKMAEETVKRV  316 (448)
Q Consensus       258 eeLE~qV~~Le~ENs~L~~ql~~l~q---~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl  316 (448)
                      .+|..+++.|+.+-..+.+++..+..   ....+..+-+.|+.++.+|..+++.+++.+..+
T Consensus        38 r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~   99 (425)
T PRK05431         38 RELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEEL   99 (425)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666777777777777777765332   244688888999999999999999999887664

>PF11577 NEMO: NF-kappa-B essential modulator NEMO; InterPro: IPR021063 This entry represents a conserved domain found at the N-terminal of NF-kappa-B essential modulator (NEMO) and optineurin proteins

Probab=81.94  E-value=17  Score=29.93  Aligned_cols=61  Identities=25%  Similarity=0.316  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 013166          259 ELETQAGQLRAEHSSLLKGLT----DVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGL  319 (448)
Q Consensus       259 eLE~qV~~Le~ENs~L~~ql~----~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~~l  319 (448)
                      ++..++..|-.||..|+..|.    .+.++|..+..=-..-+.+.+-|..+++.|.+.|.+|...
T Consensus         3 e~~~~l~~LL~EN~~LKealrQ~N~~Mker~e~l~~wqe~~~~e~~~~~~kf~Ear~lv~~L~~E   67 (68)
T PF11577_consen    3 EMQQQLQELLQENQDLKEALRQNNQAMKERFEELLAWQEKQKEEREFLERKFQEARELVERLKEE   67 (68)
T ss_dssp             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            445667788888887766544    4566777777766666777778888888888888887643

NEMO is a regulatory protein which is part of the IKK complex along with the catalytic IKKalpha and beta kinases. The IKK complex phosphorylates IkappaB targeting it for degradation which results in the release of NF-kappaB which initiates the inflammatory response, cell proliferation or cell differentiation []. NEMO activates the IKK complex's activity by associating with the unphosphorylated IKK kinase C termini. The core domain of NEMO is a dimer which binds to two fragments of IKK []. ; PDB: 3BRT_B 3BRV_D.

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=81.92  E-value=40  Score=33.55  Aligned_cols=45  Identities=11%  Similarity=0.226  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          264 AGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKM  308 (448)
Q Consensus       264 V~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~  308 (448)
                      +..++.|+..++.++..++.++..+...|..|..++..|..++..
T Consensus       211 ~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~  255 (312)
T PF00038_consen  211 LESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDE  255 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHH
Confidence            445555666666666666666666666666666666655554433

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PRK00295 hypothetical protein; Provisional

Probab=81.83  E-value=12  Score=30.43  Aligned_cols=26  Identities=19%  Similarity=0.213  Sum_probs=17.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          255 AHLNELETQAGQLRAEHSSLLKGLTD  280 (448)
Q Consensus       255 ~~LeeLE~qV~~Le~ENs~L~~ql~~  280 (448)
                      +++.+||.++..++.-...|...+..
T Consensus         5 ~Ri~~LE~kla~qE~tie~Ln~~v~~   30 (68)
T PRK00295          5 ERVTELESRQAFQDDTIQALNDVLVE   30 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34778888888777666666555543

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=81.58  E-value=5.8  Score=42.68  Aligned_cols=72  Identities=21%  Similarity=0.166  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHhhcchhhhhc
Q 013166          255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAE-----ETVKRVTGLNPLLLAR  326 (448)
Q Consensus       255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE-----~~v~Rl~~ln~~l~~~  326 (448)
                      +....+-.|...|+.|-..+.++++..+-.++.|..||..|+.+.-.+++..+++.     ..-+|+..+|.+-...
T Consensus        27 k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~~~~t~~~~~~en~~~r~~~eir~~~  103 (459)
T KOG0288|consen   27 KAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEATEKTLTVDVLIAENLRIRSLNEIRELR  103 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34467778888888888889999999888999999999999877766666655543     3345666777665444

>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function

Probab=81.57  E-value=9.1  Score=30.96  Aligned_cols=49  Identities=16%  Similarity=0.225  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVK  307 (448)
Q Consensus       259 eLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk  307 (448)
                      .|+.++..|+....-+...+..|++-...-..+-..|+.++..|+.||+
T Consensus         1 ~le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~   49 (69)
T PF04102_consen    1 MLEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLR   49 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3677888888877777777776666555555555555555555544433

It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.

>PHA03162 hypothetical protein; Provisional

Probab=81.55  E-value=4.3  Score=37.48  Aligned_cols=29  Identities=21%  Similarity=0.406  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          251 RRKQAHLNELETQAGQLRAEHSSLLKGLT  279 (448)
Q Consensus       251 ~RKq~~LeeLE~qV~~Le~ENs~L~~ql~  279 (448)
                      -+|+.-+++|..++.+|+.||..|++++.
T Consensus         9 pk~~~tmEeLaaeL~kLqmENK~LKkkl~   37 (135)
T PHA03162          9 PKAQPTMEDLAAEIAKLQLENKALKKKIK   37 (135)
T ss_pred             CccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35677899999999999999999999983

>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []

Probab=81.40  E-value=6.3  Score=31.21  Aligned_cols=32  Identities=25%  Similarity=0.425  Sum_probs=17.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          273 SLLKGLTDVNQKYDESAVNNRILKADIETLRA  304 (448)
Q Consensus       273 ~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~  304 (448)
                      .+..++..++.++..+..+|..|+.++..|+.
T Consensus        21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~   52 (80)
T PF04977_consen   21 QLNQEIAELQKEIEELKKENEELKEEIERLKN   52 (80)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            34444445555555555666666666666633

These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle

>smart00340 HALZ homeobox associated leucin zipper

Probab=81.33  E-value=2.9  Score=31.74  Aligned_cols=26  Identities=23%  Similarity=0.345  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          279 TDVNQKYDESAVNNRILKADIETLRA  304 (448)
Q Consensus       279 ~~l~q~~~~L~~EN~~Lkaql~~Lr~  304 (448)
                      +.|.+-+..|..||+.|+.++++||+
T Consensus         8 e~LKrcce~LteeNrRL~ke~~eLra   33 (44)
T smart00340        8 ELLKRCCESLTEENRRLQKEVQELRA   33 (44)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45666777899999999999999964

>PRK13922 rod shape-determining protein MreC; Provisional

Probab=81.30  E-value=10  Score=37.49  Aligned_cols=23  Identities=17%  Similarity=0.247  Sum_probs=10.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 013166          285 YDESAVNNRILKADIETLRAKVK  307 (448)
Q Consensus       285 ~~~L~~EN~~Lkaql~~Lr~kLk  307 (448)
                      +..+..||+.|++++..|+.++.
T Consensus        71 ~~~l~~en~~L~~e~~~l~~~~~   93 (276)
T PRK13922         71 LFDLREENEELKKELLELESRLQ   93 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444433

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=81.17  E-value=12  Score=41.80  Aligned_cols=55  Identities=18%  Similarity=0.229  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMA  309 (448)
Q Consensus       255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~a  309 (448)
                      +.+++|+.+++.|+.+...+..++..+...+..+..+....+.+..+|.+.++..
T Consensus       328 ~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~  382 (594)
T PF05667_consen  328 QELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLK  382 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444444444444444444444444444444433

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=81.14  E-value=13  Score=38.19  Aligned_cols=59  Identities=17%  Similarity=0.271  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETV  313 (448)
Q Consensus       255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v  313 (448)
                      +.|+.+..++..|+.||..+..+.......+..+..|+..+..++..|+.++..++...
T Consensus       244 ~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~Lc  302 (309)
T PF09728_consen  244 KEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEKLC  302 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44566666777788888888888888888888888888888888888877766665443

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=80.76  E-value=22  Score=40.60  Aligned_cols=12  Identities=25%  Similarity=0.614  Sum_probs=5.6

Q ss_pred             cchhHHHHHHhhh
Q 013166           34 QSEWELEKFLQEV   46 (448)
Q Consensus        34 ~SEW~FerfLeE~   46 (448)
                      +-|.+|| +|+|+
T Consensus       189 ~n~~~~~-~l~~~  200 (697)
T PF09726_consen  189 ENEFYMQ-LLQQA  200 (697)
T ss_pred             HHHHHHH-HHHHh
Confidence            3355552 45554

; GO: 0016021 integral to membrane

>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana

Probab=80.74  E-value=5  Score=41.72  Aligned_cols=21  Identities=14%  Similarity=0.340  Sum_probs=11.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 013166          296 KADIETLRAKVKMAEETVKRV  316 (448)
Q Consensus       296 kaql~~Lr~kLk~aE~~v~Rl  316 (448)
                      +.++.+|....+.+|.++.|.
T Consensus        65 qrq~~elneEkrtLeRELARa   85 (351)
T PF07058_consen   65 QRQVQELNEEKRTLERELARA   85 (351)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh
Confidence            444555555555555555554

>PRK02119 hypothetical protein; Provisional

Probab=80.67  E-value=10  Score=31.28  Aligned_cols=48  Identities=15%  Similarity=0.138  Sum_probs=32.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA  304 (448)
Q Consensus       257 LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~  304 (448)
                      +..|+.++..|+....-+...+..|+.-...-..+-..|+.++..|..
T Consensus         4 ~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~   51 (73)
T PRK02119          4 QQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMAN   51 (73)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567888899888888888777777766555555554555555555533

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=80.65  E-value=14  Score=37.72  Aligned_cols=52  Identities=19%  Similarity=0.224  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV  306 (448)
Q Consensus       255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kL  306 (448)
                      +.|.++..++..++.+...|..++..+..++..+..+-..|++++.++.+.+
T Consensus       216 ~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~  267 (325)
T PF08317_consen  216 QELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIR  267 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555555555555555555555555555555555555555554443

>PRK13922 rod shape-determining protein MreC; Provisional

Probab=80.62  E-value=19  Score=35.62  Aligned_cols=33  Identities=24%  Similarity=0.332  Sum_probs=15.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q 013166          264 AGQLRAEHSSLLKGLTDVNQKYD---ESAVNNRILK  296 (448)
Q Consensus       264 V~~Le~ENs~L~~ql~~l~q~~~---~L~~EN~~Lk  296 (448)
                      ...|+.||..|++++..|+.+..   .+..||..||
T Consensus        71 ~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~  106 (276)
T PRK13922         71 LFDLREENEELKKELLELESRLQELEQLEAENARLR  106 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555555555554443333   3444444444

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=80.47  E-value=33  Score=35.44  Aligned_cols=86  Identities=17%  Similarity=0.292  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHH--------------
Q 013166          232 DDKRARRMLSNRESARRSRRRKQAHLNELE--------------TQAGQLRAEHSSLLKGLTDVNQ--------------  283 (448)
Q Consensus       232 d~KR~RRmlsNRESARRSR~RKq~~LeeLE--------------~qV~~Le~ENs~L~~ql~~l~q--------------  283 (448)
                      ...++.-|+.+-+--++-|..||-+|+.||              .+...|+.||..|....+.+..              
T Consensus        16 aLqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~   95 (307)
T PF10481_consen   16 ALQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKES   95 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHH
Confidence            344444455555544555555555555554              3455677777777776666554              


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013166          284 KYDESAVNNRILKADIETLRAKVKMAEETVKRVT  317 (448)
Q Consensus       284 ~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~  317 (448)
                      ++..++......|.+++.|...|+.......|..
T Consensus        96 qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ  129 (307)
T PF10481_consen   96 QVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQ  129 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344555555666667777666666666655543

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>PLN02678 seryl-tRNA synthetase

Probab=80.44  E-value=30  Score=37.50  Aligned_cols=84  Identities=19%  Similarity=0.257  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHh-hcchhhhhccCCC
Q 013166          255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAV---NNRILKADIETLRAKVKMAEETVKRVT-GLNPLLLARSDVP  330 (448)
Q Consensus       255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~---EN~~Lkaql~~Lr~kLk~aE~~v~Rl~-~ln~~l~~~~~~~  330 (448)
                      ..+-+|..+...|..+-..|+.+...+..++..+..   +-..|++++.+|..+++.+|..++.+. .++.++..+..++
T Consensus        33 d~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~~iPNi~  112 (448)
T PLN02678         33 DEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALDAKLKTIGNLV  112 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            344444444444444444444444444444433111   112344455555555555554444432 2233333334444


Q ss_pred             CCCCCCCC
Q 013166          331 GVGMPLVN  338 (448)
Q Consensus       331 ~~~~p~~~  338 (448)
                      .-..|+++
T Consensus       113 ~~~VP~G~  120 (448)
T PLN02678        113 HDSVPVSN  120 (448)
T ss_pred             CccCCCCC
Confidence            34445443

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=80.30  E-value=26  Score=35.98  Aligned_cols=54  Identities=19%  Similarity=0.220  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKM  308 (448)
Q Consensus       255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~  308 (448)
                      +.+.+|+.+...|..+-..+......+..++..+..+...|+.++..+..+|..
T Consensus        78 ~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~  131 (314)
T PF04111_consen   78 QELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDR  131 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444444444444444444444444444444433

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=80.29  E-value=22  Score=39.59  Aligned_cols=65  Identities=18%  Similarity=0.348  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          244 ESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKM  308 (448)
Q Consensus       244 ESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~  308 (448)
                      +.+.+.|..=...+.+++..+..|+.|...++.++..+......|..||..|+.++..+|..|..
T Consensus       130 ~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~  194 (546)
T KOG0977|consen  130 EKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDD  194 (546)
T ss_pred             HHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            44555555555666777777888888888888888888888888888888888888888766543

>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long)

Probab=80.03  E-value=6.3  Score=38.59  Aligned_cols=49  Identities=24%  Similarity=0.350  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013166          266 QLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTG  318 (448)
Q Consensus       266 ~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~~  318 (448)
                      .--.||..|..++..+...+..|..||..|+.    |...++.+-+++.||.+
T Consensus       122 eaL~ENe~Lh~~ie~~~eEi~~lk~en~~L~e----lae~~~~la~~ie~l~~  170 (200)
T PF07412_consen  122 EALEENEKLHKEIEQKDEEIAKLKEENEELKE----LAEHVQYLAEVIERLTG  170 (200)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH----HHHHHHHHHHHHHHCC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhc
Confidence            34457888888888888888888888888875    44445566667777764

Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=80.02  E-value=24  Score=42.04  Aligned_cols=64  Identities=16%  Similarity=0.282  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          245 SARRSRRRKQAHLNELETQA-GQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKM  308 (448)
Q Consensus       245 SARRSR~RKq~~LeeLE~qV-~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~  308 (448)
                      ..+.+..+..+.+.+++.+. ..+..+-.++..++..|.++...++..+..|+.+..+++.++..
T Consensus       369 ~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~  433 (1074)
T KOG0250|consen  369 KLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKE  433 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444455555444 44444444555555555555555555555555555555555444

>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast)

Probab=80.02  E-value=14  Score=35.39  Aligned_cols=18  Identities=17%  Similarity=0.344  Sum_probs=8.3

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 013166          251 RRKQAHLNELETQAGQLR  268 (448)
Q Consensus       251 ~RKq~~LeeLE~qV~~Le  268 (448)
                      .+.++.+.+|+.++..+.
T Consensus        79 ~~~~~~i~~l~~~i~~~~   96 (188)
T PF03962_consen   79 EELEKKIEELEEKIEEAK   96 (188)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            333344455555554443

The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	448
1dh3_A	55	Transcription factor CREB; protein-DNA complex, tr	2e-14
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	2e-10
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	5e-09
3a5t_A	107	Transcription factor MAFG; protein-DNA complex, BZ	8e-09
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	1e-08
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	2e-08
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	5e-08
2wt7_B	90	Transcription factor MAFB; transcription, transcri	8e-08
1gd2_E	70	Transcription factor PAP1; basic leucine zipper, p	3e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1hjb_A	87	Ccaat/enhancer binding protein beta; transcription	1e-05
1gu4_A	78	CAAT/enhancer binding protein beta; transcription/	4e-04

>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1 Length = 55

 Score = 66.3 bits (162), Expect = 2e-14
 Identities = 18/52 (34%), Positives = 32/52 (61%)

Query: 234 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKY 285
           KR  R++ NRE+AR SRR+K+ ++  LE +   L  ++ +L++ L  +   Y
Sbjct: 1   KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLY 52

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1 Length = 61

 Score = 55.4 bits (134), Expect = 2e-10
 Identities = 13/41 (31%), Positives = 24/41 (58%)

Query: 234 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSL 274
           KR + +  NR +A RSR++++  +  LE +A  L + +  L
Sbjct: 1   KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQL 41

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A Length = 62

 Score = 51.2 bits (123), Expect = 5e-09
 Identities = 15/43 (34%), Positives = 25/43 (58%)

Query: 234 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLK 276
           K  R+ + NR +A +SR+RK   +  LE +   L+A++S L  
Sbjct: 1   KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELAS 43

>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus} Length = 107

 Score = 52.4 bits (125), Expect = 8e-09
 Identities = 18/74 (24%), Positives = 29/74 (39%)

Query: 229 DSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDES 288
           + +  K+ RR L NR  A   R ++     ELE Q  +L+ E   L      +  + D  
Sbjct: 32  EIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELDAL 91

Query: 289 AVNNRILKADIETL 302
                 L+    T+
Sbjct: 92  RSKYEALQNFARTV 105

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1 Length = 63

 Score = 50.0 bits (120), Expect = 1e-08
 Identities = 11/41 (26%), Positives = 24/41 (58%)

Query: 234 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSL 274
           K+ ++M  N+ +A R R++K+A    L  +  +L  ++ +L
Sbjct: 2   KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEAL 42

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D Length = 63

 Score = 50.2 bits (120), Expect = 2e-08
 Identities = 13/44 (29%), Positives = 23/44 (52%)

Query: 233 DKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLK 276
           +KR  R   N+ +A + R R++   + L+ +  QL  E S+L  
Sbjct: 1   EKRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQT 44

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D Length = 63

 Score = 48.7 bits (116), Expect = 5e-08
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 4/49 (8%)

Query: 226 EGLDSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSL 274
           E  D    KRAR    N E+ARRSR RK   + +LE +  +L +++  L
Sbjct: 5   ESSDPAALKRAR----NTEAARRSRARKLQRMKQLEDKVEELLSKNYHL 49

>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A Length = 90

 Score = 48.8 bits (116), Expect = 8e-08
 Identities = 14/54 (25%), Positives = 27/54 (50%)

Query: 234 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDE 287
           K+ RR L NR  A+  R ++    + LE +  QL  +   L + ++ + ++ D 
Sbjct: 27  KQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDA 80

>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1 Length = 70

 Score = 46.6 bits (110), Expect = 3e-07
 Identities = 23/65 (35%), Positives = 32/65 (49%)

Query: 232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVN 291
            +  ++R   NR + R  R+RK+ HL  LETQ   L+  HSS       + QK  +    
Sbjct: 6   QEPSSKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEE 65

Query: 292 NRILK 296
            RILK
Sbjct: 66  LRILK 70

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.0 bits (121), Expect = 7e-07
 Identities = 63/433 (14%), Positives = 120/433 (27%), Gaps = 130/433 (30%)

Query: 1   MNSVFSADDFSDSFLSSPSPPPASFHALPMNRSQSEWELEKFLQEVTVSPRAISSSSASD 60
             S+ S ++  D  + S      +        S+ E  ++KF++EV              
Sbjct: 42  PKSILSKEEI-DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVL-----------RI 89

Query: 61  NSVPAVIGPSVMSKSRAYEIGDDDVVEIKKSHRDQSL-DPPVIPSSTAPVDSDEYRAYLK 119
           N         +MS  +  +     +  +    RD+   D  V             R    
Sbjct: 90  NY------KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS------RLQPY 137

Query: 120 TKLDLACAAVALRTAPVKPEDKSSLIENQTQAAKPSE-LGSQAMA----TVNVSTAHDAL 174
            KL                  + +L+E      +P++ +    +     T     A D  
Sbjct: 138 LKL------------------RQALLE-----LRPAKNVLIDGVLGSGKTW---VALDVC 171

Query: 175 GTHPKADFRPLGSADLPAVQARPAAQVRQSTSGSSREDSDDDELEGDTETIEGLDSVDDK 234
                  ++         VQ +   ++          +S +  LE   + +  +D     
Sbjct: 172 -----LSYK---------VQCKMDFKIFWLNLK--NCNSPETVLEMLQKLLYQIDPNWTS 215

Query: 235 RARRMLSNR---ESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVN 291
           R+    + +    S +   RR               +   + LL  L +V      +A N
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKS-----------KPYENCLLV-LLNVQNAKAWNAFN 263

Query: 292 N--RIL-----KADIETLRAKVKMAEETVKRVTGLNPL----LLARSDVPGVGMPLVNVP 340
              +IL     K   + L A              L P     LL +     +     ++P
Sbjct: 264 LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY----LDCRPQDLP 319

Query: 341 LDASRNATHP---------MQPNPNQF----------FHQAI-PSISTPTPN-----HQS 375
            +     T+P         ++     +              I  S++   P         
Sbjct: 320 REVLT--TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR 377

Query: 376 LDSSFPSNIQLPT 388
           L S FP +  +PT
Sbjct: 378 L-SVFPPSAHIPT 389

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 1e-05
 Identities = 54/419 (12%), Positives = 113/419 (26%), Gaps = 132/419 (31%)

Query: 22  PASFHALPMNRSQSEWELEKFLQEVTVSPRAI------------SSSSASDNSVPAVIGP 69
              F    ++R Q   +L + L E+  +   +            +        V   +  
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF 182

Query: 70  SV--MSKSRAYEIGDDDVVEIKKS--HR-DQSLDPPVIPSSTAPVDSDEYRAYLKTKLDL 124
            +  ++         + V+E+ +   ++ D +       SS   +     +A L+  L  
Sbjct: 183 KIFWLNLKNCNS--PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240

Query: 125 ACAAVALRTAPVKPEDKSSLI----ENQTQAAKPSELGSQAMATVNVSTAHDALG----T 176
                       KP +   L+    +N  +A     L  + + T       D L     T
Sbjct: 241 ------------KPYENCLLVLLNVQN-AKAWNAFNLSCKILLTTRFKQVTDFLSAATTT 287

Query: 177 HPKADFRPLG-----------------SADLP--AVQARP------AAQVRQSTSGSSR- 210
           H   D   +                    DLP   +   P      A  +R   +     
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW 347

Query: 211 EDSDDDELEGDTE-TIEGLDSVDDKRARRMLS---------------------------- 241
           +  + D+L    E ++  L+  + ++    LS                            
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV 407

Query: 242 NRESARRS---RRRKQA-------HLNELETQAGQLRAEHSSLL------------KGLT 279
             +  + S   ++ K++       +L EL+ +     A H S++              + 
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPSIYL-ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP 466

Query: 280 DVNQKY--------------DESAVNNRILKADIETLRAKVKMAEETVKRVTGLNPLLL 324
               +Y               E     R++  D   L  K++           +   L 
Sbjct: 467 PYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQ 525

>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1 Length = 87

 Score = 42.3 bits (99), Expect = 1e-05
 Identities = 15/81 (18%), Positives = 28/81 (34%), Gaps = 21/81 (25%)

Query: 228 LDSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDE 287
           +D   D+   R   N  + R+SR + +    E + +  +L AE                 
Sbjct: 9   VDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAE----------------- 51

Query: 288 SAVNNRILKADIETLRAKVKM 308
               N  L+  +E L  ++  
Sbjct: 52  ----NERLQKKVEQLSRELST 68

>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A Length = 78

 Score = 38.0 bits (88), Expect = 4e-04
 Identities = 12/47 (25%), Positives = 22/47 (46%)

Query: 228 LDSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSL 274
           +D   D+   R   N  + R+SR + +    E + +  +L AE+  L
Sbjct: 9   VDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERL 55

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	448
1dh3_A	55	Transcription factor CREB; protein-DNA complex, tr	99.51
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	99.26
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	99.17
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	99.16
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	99.06
1gd2_E	70	Transcription factor PAP1; basic leucine zipper, p	98.88
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	98.83
1gu4_A	78	CAAT/enhancer binding protein beta; transcription/	98.45
1hjb_A	87	Ccaat/enhancer binding protein beta; transcription	98.43
3a5t_A	107	Transcription factor MAFG; protein-DNA complex, BZ	98.35
2wt7_B	90	Transcription factor MAFB; transcription, transcri	98.06
2oqq_A	42	Transcription factor HY5; homodimer leucine zipper	96.95
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	95.7
1skn_P	92	DNA-binding domain of SKN-1; complex (transcriptio	95.28
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	95.03
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	94.61
1deb_A	54	APC protein, adenomatous polyposis coli protein; c	94.57
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	94.06
2w6a_A	63	ARF GTPase-activating protein GIT1; PIX, zinc, sig	93.75
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	93.45
1wlq_A	83	Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2z	92.9
1go4_E	100	MAD1 (mitotic arrest deficient)-like 1; mitotic sp	92.49
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	92.29
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	91.43
2w83_C	77	C-JUN-amino-terminal kinase-interacting protein 4;	91.27
3s9g_A	104	Protein hexim1; cyclin T-binding domain (TBD), cyc	90.91
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	90.64
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	90.44
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	90.31
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	90.25
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	90.16
3m9b_A	251	Proteasome-associated ATPase; coil COIL with 5 bet	90.03
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	89.96
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	89.46
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	89.46
1hjb_A	87	Ccaat/enhancer binding protein beta; transcription	89.35
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	89.3
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	89.26
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	88.94
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	88.91
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	88.82
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	88.69
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	88.66
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	88.64
1wle_A	501	Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bo	88.1
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	87.86
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	87.46
3cve_A	72	Homer protein homolog 1; coiled coil, alternative	87.1
1gd2_E	70	Transcription factor PAP1; basic leucine zipper, p	86.98
2wvr_A	209	Geminin; DNA replication license, DNA replication	86.95
3m48_A	33	General control protein GCN4; leucine zipper, synt	86.94
3he5_A	49	Synzip1; heterodimeric coiled-coil, de novo protei	86.91
3jsv_C	94	NF-kappa-B essential modulator; ubiquitin, coiled-	86.79
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	86.53
1p9i_A	31	Cortexillin I/GCN4 hybrid peptide; coiled-coil, un	86.52
2c9l_Y	63	EB1, zebra, BZLF1 trans-activator protein; viral p	86.46
1kd8_B	36	GABH BLL, GCN4 acid base heterodimer base-D12LA16L	86.21
1gu4_A	78	CAAT/enhancer binding protein beta; transcription/	85.89
1ses_A	421	Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A	85.82
3s9g_A	104	Protein hexim1; cyclin T-binding domain (TBD), cyc	85.82
3cvf_A	79	Homer-3, homer protein homolog 3; coiled coil, alt	85.75
2oxj_A	34	Hybrid alpha/beta peptide based on the GCN4-P1 Se	85.41
2dq0_A	455	Seryl-tRNA synthetase; coiled-coil, homodimer, str	85.09
3s4r_A	93	Vimentin; alpha-helix, cytoskeleton, intermediate	85.06
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	84.43
3vmx_A	48	Voltage-gated hydrogen channel 1; coiled-coil, ION	84.23
3qne_A	485	Seryl-tRNA synthetase, cytoplasmic; amino acid bio	83.82
2zxx_A	79	Geminin; coiled-coil, cell cycle, coiled coil, DNA	83.8
3bas_A	89	Myosin heavy chain, striated muscle/general contro	83.76
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	83.22
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	83.06
3mq7_A	121	Bone marrow stromal antigen 2; HIV, antiviral prot	82.8
1kd8_A	36	GABH AIV, GCN4 acid base heterodimer acid-D12IA16V	82.64
3a2a_A	58	Voltage-gated hydrogen channel 1; voltage-gated pr	82.28
2xdj_A	83	Uncharacterized protein YBGF; unknown function; 1.	82.25
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	81.82
2oa5_A	110	Hypothetical protein BQLF2; MHR28B, NESG, structur	81.78
2oqq_A	42	Transcription factor HY5; homodimer leucine zipper	81.68
4h22_A	103	Leucine-rich repeat flightless-interacting protei;	81.66
3he5_B	52	Synzip2; heterodimeric coiled-coil, de novo protei	81.65
3c3f_A	34	Alpha/beta peptide with the GCN4-PLI SIDE chain S	81.53
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	81.43
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	81.13
4etp_A	403	Kinesin-like protein KAR3; kinesin motor protein,	81.05
3a7o_A	75	Autophagy protein 16; coiled-coil, coiled coil, cy	81.04
3iv1_A	78	Tumor susceptibility gene 101 protein; coiled_COIL	80.95
3bas_A	89	Myosin heavy chain, striated muscle/general contro	80.89
2kz5_A	91	Transcription factor NF-E2 45 kDa subunit; structu	80.85
3efg_A	78	Protein SLYX homolog; xanthomonas campestris PV. c	80.76
3swf_A	74	CGMP-gated cation channel alpha-1; coiled-coil, as	80.36
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	80.29
1x8y_A	86	Lamin A/C; structural protein, intermediate filame	80.19
3m91_A	51	Proteasome-associated ATPase; coil COIL alpha heli	80.14

>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1

Probab=99.51  E-value=2.1e-14  Score=110.17  Aligned_cols=53  Identities=34%  Similarity=0.596  Sum_probs=49.6

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          234 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYD  286 (448)
Q Consensus       234 KR~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~  286 (448)
                      ||.+||++||+||++||+||++|+++||.+|..|+.||..|..++..|++.|.
T Consensus         1 kr~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~~   53 (55)
T 1dh3_A            1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLYS   53 (55)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTST
T ss_pred             ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            68999999999999999999999999999999999999999999998887653

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D

Probab=99.26  E-value=2e-11  Score=95.53  Aligned_cols=54  Identities=24%  Similarity=0.390  Sum_probs=48.2

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          233 DKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYD  286 (448)
Q Consensus       233 ~KR~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~  286 (448)
                      +||.+|+++||++|++||.||++++.+|+.+|..|+.+|..|..++..|..++.
T Consensus         1 Ekr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~   54 (63)
T 2wt7_A            1 EKRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKE   54 (63)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            489999999999999999999999999999999999999999998875544433

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1

Probab=99.17  E-value=1e-10  Score=90.70  Aligned_cols=50  Identities=28%  Similarity=0.407  Sum_probs=46.1

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          234 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQ  283 (448)
Q Consensus       234 KR~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q  283 (448)
                      ||.+|+++||++|++||.||++|+.+|+.+|..|+.+|..|..++..|..
T Consensus         1 kR~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~   50 (61)
T 1t2k_D            1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRN   50 (61)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999988875443

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D

Probab=99.16  E-value=5.3e-11  Score=93.56  Aligned_cols=47  Identities=28%  Similarity=0.388  Sum_probs=41.4

Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          240 LSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYD  286 (448)
Q Consensus       240 lsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~  286 (448)
                      .+||+||+|||.||++|+.+|+.+|..|+.+|..|..++..|.+++.
T Consensus        15 ~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~   61 (63)
T 2dgc_A           15 ARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLVG   61 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44999999999999999999999999999999999888887776553

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A

Probab=99.06  E-value=3.3e-10  Score=88.21  Aligned_cols=50  Identities=30%  Similarity=0.444  Sum_probs=45.1

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          234 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQ  283 (448)
Q Consensus       234 KR~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q  283 (448)
                      |+.+|..+||++|++||.||++++.+|+.+|..|+.+|..|..++..|..
T Consensus         1 K~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~   50 (62)
T 1jnm_A            1 KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLRE   50 (62)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999888875443

>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1

Probab=98.88  E-value=5.6e-09  Score=83.88  Aligned_cols=57  Identities=35%  Similarity=0.514  Sum_probs=46.4

Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          236 ARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV  306 (448)
Q Consensus       236 ~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kL  306 (448)
                      .||+..||.++|..|.||++||.+||.+|..|+.++..|.              .||..|+.++..|+.++
T Consensus        10 ~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~--------------~en~~Lr~~i~~L~~El   66 (70)
T 1gd2_E           10 SKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTT--------------LENDQLRQKVRQLEEEL   66 (70)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHTTHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHH
Confidence            6899999999999999999999999999999999887654              55555555555555444

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1

Probab=98.83  E-value=9.1e-09  Score=80.64  Aligned_cols=58  Identities=24%  Similarity=0.318  Sum_probs=44.7

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          234 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKAD  298 (448)
Q Consensus       234 KR~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaq  298 (448)
                      |+.+++.+||.+|+|+|.||++++.+|+.++..|+.+|..|..++..       |..|+..|+.-
T Consensus         2 k~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~-------L~~E~~~Lk~l   59 (63)
T 1ci6_A            2 KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADS-------LAKEIQYLKDL   59 (63)
T ss_dssp             ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred             chHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence            68899999999999999999999999999999999999999988875       44555555543

>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A

Probab=98.45  E-value=8.8e-07  Score=72.44  Aligned_cols=54  Identities=24%  Similarity=0.263  Sum_probs=45.5

Q ss_pred             CchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          229 DSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVN  282 (448)
Q Consensus       229 d~~d~KR~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~  282 (448)
                      |..+.+-..|..+|.++|+|||.++++...+++.+|..|+.||..|..++..|.
T Consensus        10 dk~d~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~   63 (78)
T 1gu4_A           10 DKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLS   63 (78)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334455566688999999999999999999999999999999998888877543

>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1

Probab=98.43  E-value=1.1e-06  Score=73.28  Aligned_cols=52  Identities=25%  Similarity=0.256  Sum_probs=44.7

Q ss_pred             CchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          229 DSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTD  280 (448)
Q Consensus       229 d~~d~KR~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~  280 (448)
                      |..+++-..|..+|.++|+|||.++++...+++.++..|+.||..|..+|..
T Consensus        10 dk~d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~   61 (87)
T 1hjb_A           10 DKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQ   61 (87)
T ss_dssp             CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3345666777889999999999999999999999999999999888888764

>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}

Probab=98.35  E-value=2.2e-08  Score=86.34  Aligned_cols=44  Identities=34%  Similarity=0.446  Sum_probs=37.0

Q ss_pred             hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          231 VDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSL  274 (448)
Q Consensus       231 ~d~KR~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L  274 (448)
                      .+.|.+||.++||.+|++||.||.++.++||.++..|..+...|
T Consensus        34 ~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L   77 (107)
T 3a5t_A           34 IQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKL   77 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTT
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46799999999999999999999999999998776665554433

>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A

Probab=98.06  E-value=2.2e-05  Score=65.84  Aligned_cols=50  Identities=26%  Similarity=0.341  Sum_probs=42.5

Q ss_pred             hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          231 VDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTD  280 (448)
Q Consensus       231 ~d~KR~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~  280 (448)
                      ...|.+||.++||..|+-||.||.....+||.++..|..+...|..++..
T Consensus        24 ~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~   73 (90)
T 2wt7_B           24 IRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSR   73 (90)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46888999999999999999999999999999888887777666655544

>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}

Probab=96.95  E-value=0.0018  Score=47.23  Aligned_cols=39  Identities=28%  Similarity=0.371  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADI  299 (448)
Q Consensus       254 q~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql  299 (448)
                      |+|+.+||.++..|+..|.+|..++.       .|..||..||+-+
T Consensus         2 KaYl~eLE~r~k~le~~naeLEervs-------tLq~EN~mLRqvl   40 (42)
T 2oqq_A            2 SAYLSELENRVKDLENKNSELEERLS-------TLQNENQMLRHIL   40 (42)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhHHHHHHHh
Confidence            58999999999999999988877766       6778999887644

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=95.70  E-value=0.083  Score=47.00  Aligned_cols=61  Identities=18%  Similarity=0.177  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          252 RKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEET  312 (448)
Q Consensus       252 RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~  312 (448)
                      +.+...+.|+.++..+..|...|+.++..++.++..+..++..|+.++..|+.++..+|..
T Consensus        72 k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~  132 (138)
T 3hnw_A           72 KAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETE  132 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445567778888888888888888888877777777777777777777777777766644

>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1

Probab=95.28  E-value=0.0082  Score=50.39  Aligned_cols=32  Identities=22%  Similarity=0.309  Sum_probs=27.4

Q ss_pred             hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 013166          231 VDDKRARRMLSNRESARRSRRRKQAHLNELET  262 (448)
Q Consensus       231 ~d~KR~RRmlsNRESARRSR~RKq~~LeeLE~  262 (448)
                      ...|.+||..+||.+|+++|+||...++.|+.
T Consensus        59 ~~ir~~RRR~KNr~AA~~CRkrK~~~~d~l~~   90 (92)
T 1skn_P           59 QLIRKIRRRGKNKVAARTCRQRRTDRHDKMSH   90 (92)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhc
Confidence            46888999999999999999999998887763

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=95.03  E-value=0.22  Score=41.08  Aligned_cols=49  Identities=14%  Similarity=0.146  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA  304 (448)
Q Consensus       256 ~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~  304 (448)
                      -++.||.+|+++-....-|..++..|.++...|..+|..++...+.|++
T Consensus         7 lleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~   55 (81)
T 2jee_A            7 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELER   55 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            3556666666655555555555555555555555555553333333333

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=94.61  E-value=0.2  Score=41.28  Aligned_cols=53  Identities=15%  Similarity=0.283  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKM  308 (448)
Q Consensus       256 ~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~  308 (448)
                      -+.-|+.+++.|+.+|..|..++..++.....+..||..|+.+....+.+|..
T Consensus        21 tI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~   73 (81)
T 2jee_A           21 TITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQA   73 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556778888888888888888888888888999999999888888766543

>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1

Probab=94.57  E-value=0.11  Score=39.44  Aligned_cols=46  Identities=22%  Similarity=0.290  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL  302 (448)
Q Consensus       257 LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~L  302 (448)
                      .+.|-.||+.|+.||..|++++.+-..++..|+.|-.-+|+=+..|
T Consensus         5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~l   50 (54)
T 1deb_A            5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQL   50 (54)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHH
Confidence            4678899999999999999999999999999888877666544444

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=94.06  E-value=0.37  Score=43.84  Aligned_cols=38  Identities=18%  Similarity=0.031  Sum_probs=20.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          262 TQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADI  299 (448)
Q Consensus       262 ~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql  299 (448)
                      .-+..|+.|...|.-++..++++...+..||..|-.+.
T Consensus        96 K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RW  133 (152)
T 3a7p_A           96 KNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARW  133 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555555555555555555555554433

>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}

Probab=93.75  E-value=0.23  Score=38.85  Aligned_cols=41  Identities=24%  Similarity=0.258  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKA  297 (448)
Q Consensus       257 LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lka  297 (448)
                      |..-|.+|++|..-|..|..++..++.+++.|..||..||.
T Consensus        22 LaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~   62 (63)
T 2w6a_A           22 LATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ   62 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence            45568889999999999999999999999999999999874

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=93.45  E-value=0.56  Score=41.65  Aligned_cols=61  Identities=10%  Similarity=0.186  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013166          257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVT  317 (448)
Q Consensus       257 LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~  317 (448)
                      +-.+..++..|+.+...+.+++.+|.+++..+..++..++.++.+|+.++..++..+.+|.
T Consensus        70 l~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le  130 (138)
T 3hnw_A           70 YFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE  130 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445567778888888888888888888888888888888888888888888888887775

>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*

Probab=92.90  E-value=0.5  Score=39.12  Aligned_cols=50  Identities=16%  Similarity=0.223  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013166          265 GQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTG  318 (448)
Q Consensus       265 ~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~~  318 (448)
                      ..--.||..|..++..+...+..+..+|..|+    +|-.+++.+-++++||+|
T Consensus        34 ~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~----elA~~~q~la~~i~~L~~   83 (83)
T 1wlq_A           34 YEALKENEKLHKEIEQKDSEIARLRKENKDLA----EVAEHVQYMAEVIERLSN   83 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH----HHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcC
Confidence            34446888888888888888888889998887    566666777778888864

>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1

Probab=92.49  E-value=0.32  Score=41.50  Aligned_cols=31  Identities=16%  Similarity=0.228  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYD  286 (448)
Q Consensus       256 ~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~  286 (448)
                      .+..|..+++.|+.||..|++++..|.-++.
T Consensus        13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le   43 (100)
T 1go4_E           13 EADTLRLKVEELEGERSRLEEEKRMLEAQLE   43 (100)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5677778888888888888888877665443

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=92.29  E-value=1.5  Score=50.05  Aligned_cols=29  Identities=24%  Similarity=0.300  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          282 NQKYDESAVNNRILKADIETLRAKVKMAE  310 (448)
Q Consensus       282 ~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE  310 (448)
                      +++...|..||.+|++++.+|...+...+
T Consensus      1022 ~~kv~~L~~e~~~L~qq~~~l~~~~~~~~ 1050 (1080)
T 2dfs_A         1022 EQLVSELKEQNTLLKTEKEELNRRIHDQA 1050 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555677788888888888875554443

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=91.43  E-value=3.9  Score=34.18  Aligned_cols=47  Identities=4%  Similarity=0.102  Sum_probs=20.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL  302 (448)
Q Consensus       256 ~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~L  302 (448)
                      ..+.++.++..++.++..+-.++..|+.++..+..+=..+..++...
T Consensus        24 rae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea   70 (101)
T 3u1c_A           24 RAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKS   70 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444444444444333333333333

>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}

Probab=91.27  E-value=0.82  Score=37.33  Aligned_cols=49  Identities=20%  Similarity=0.333  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          258 NELETQAGQLRAEHSSLLKGL-------TDVNQKYDESAVNNRILKADIETLRAKV  306 (448)
Q Consensus       258 eeLE~qV~~Le~ENs~L~~ql-------~~l~q~~~~L~~EN~~Lkaql~~Lr~kL  306 (448)
                      ..+-.+|..|-.||.+|...-       .+|..+..+|..|+..|+.++..+++-.
T Consensus         5 ~gmgkevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~   60 (77)
T 2w83_C            5 EFMGREVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAK   60 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            355667888888888876643       3455677777788888777777665443

>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A

Probab=90.91  E-value=0.79  Score=39.14  Aligned_cols=19  Identities=26%  Similarity=0.343  Sum_probs=11.6

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 013166          259 ELETQAGQLRAEHSSLLKG  277 (448)
Q Consensus       259 eLE~qV~~Le~ENs~L~~q  277 (448)
                      +||.+++.|+.||..|+..
T Consensus        41 ~LE~~~s~le~e~~rlr~~   59 (104)
T 3s9g_A           41 ELEKSLSRMEDENNRLRLE   59 (104)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            4666666666666666553

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=90.64  E-value=1.4  Score=35.44  Aligned_cols=57  Identities=12%  Similarity=0.266  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          260 LETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRV  316 (448)
Q Consensus       260 LE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl  316 (448)
                      +..++..|+.+......++..+..++......+..+-.++..|.+|++.+|+.+++.
T Consensus         4 ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~   60 (81)
T 1ic2_A            4 IKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKY   60 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            334445555555555555555555555555555555555555555555555555443

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=90.44  E-value=3.1  Score=34.61  Aligned_cols=52  Identities=10%  Similarity=0.116  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV  306 (448)
Q Consensus       255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kL  306 (448)
                      ...+.++.++..++.++..+-.++..|+.++..+..+=..+..++..+..+|
T Consensus        23 d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kL   74 (101)
T 3u59_A           23 DRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKL   74 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555555555555555555555555554444444444444443333

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=90.31  E-value=7.2  Score=32.58  Aligned_cols=78  Identities=17%  Similarity=0.130  Sum_probs=39.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 013166          242 NRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGL  319 (448)
Q Consensus       242 NRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~~l  319 (448)
                      -.+.|...-..-...+.+++.+..+++.|...|.+++..+...+..+...=...+..++.-...+..+|..|.-|..-
T Consensus        17 e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rr   94 (101)
T 3u1c_A           17 DKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRR   94 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444555555566666666666666666655555555444333333444444444444455554444433

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=90.25  E-value=4.8  Score=36.61  Aligned_cols=58  Identities=10%  Similarity=0.068  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 013166          263 QAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGLN  320 (448)
Q Consensus       263 qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~~ln  320 (448)
                      .+..|+.|...|..++.++...+..-...+..|+.++..|+-++.++|+...++...|
T Consensus        69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN  126 (152)
T 3a7p_A           69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEH  126 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555555555555555555555555555555555555555555555555555555444

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=90.16  E-value=1.9  Score=44.34  Aligned_cols=62  Identities=11%  Similarity=0.078  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRV  316 (448)
Q Consensus       255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl  316 (448)
                      +.+..++.+.+.++.+++.+.++++...+++..++.|...|+.++++.++++..+.+++..+
T Consensus       509 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~  570 (597)
T 3oja_B          509 KVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLK  570 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHH
Confidence            34445555666666666666767766667777777777777777777666666665555444

>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A

Probab=90.03  E-value=0.29  Score=47.67  Aligned_cols=45  Identities=18%  Similarity=0.251  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Q 013166          277 GLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGLNP  321 (448)
Q Consensus       277 ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~~ln~  321 (448)
                      ++..++.++..|...|..|++.+.+|+++|..+++++++|..--.
T Consensus        55 ~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~sPPL   99 (251)
T 3m9b_A           55 DIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQPPS   99 (251)
T ss_dssp             HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCCE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            355667777788888888899999999999999999999876543

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=89.96  E-value=9  Score=33.66  Aligned_cols=22  Identities=9%  Similarity=0.256  Sum_probs=8.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 013166          285 YDESAVNNRILKADIETLRAKV  306 (448)
Q Consensus       285 ~~~L~~EN~~Lkaql~~Lr~kL  306 (448)
                      +..+..+-..+..++..++.++
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~  253 (284)
T 1c1g_A          232 LKEAETRAEFAERSVTKLEKSI  253 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=89.46  E-value=2.5  Score=39.53  Aligned_cols=56  Identities=23%  Similarity=0.267  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEET  312 (448)
Q Consensus       257 LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~  312 (448)
                      +..|+.++..|+..+..|..+|..|.+....++...|.+..-++.+..|+..+=+.
T Consensus        90 ~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr  145 (189)
T 2v71_A           90 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIER  145 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            55666666666666667777777777776777777777677777776666655433

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D

Probab=89.46  E-value=4.3  Score=31.16  Aligned_cols=38  Identities=13%  Similarity=0.115  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          276 KGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETV  313 (448)
Q Consensus       276 ~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v  313 (448)
                      ..+..|..++..|..+|..|+.++..|+..+..+..++
T Consensus        23 ~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l   60 (63)
T 2wt7_A           23 ELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL   60 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44667788888999999999999999988887776554

>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1

Probab=89.35  E-value=3  Score=34.49  Aligned_cols=38  Identities=18%  Similarity=0.198  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          277 GLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVK  314 (448)
Q Consensus       277 ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~  314 (448)
                      +...+.++...|+.||..|+++|+.|..++..+...+.
T Consensus        37 r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~   74 (87)
T 1hjb_A           37 RNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFK   74 (87)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33456667778888888888888888877776665543

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=89.30  E-value=8.4  Score=31.94  Aligned_cols=81  Identities=19%  Similarity=0.223  Sum_probs=50.8

Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013166          239 MLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTG  318 (448)
Q Consensus       239 mlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~~  318 (448)
                      |---.+.|..--..-...+.+++.+..+++.+...|.+++..+...+..+...=..+...++.-+.++..+|..|..|..
T Consensus        14 lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnR   93 (101)
T 3u59_A           14 LKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNR   93 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555566667777777777777777777777777766665555555555566666666666666655544


Q ss_pred             c
Q 013166          319 L  319 (448)
Q Consensus       319 l  319 (448)
                      .
T Consensus        94 r   94 (101)
T 3u59_A           94 R   94 (101)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1

Probab=89.26  E-value=1  Score=34.80  Aligned_cols=40  Identities=13%  Similarity=0.189  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          274 LLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETV  313 (448)
Q Consensus       274 L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v  313 (448)
                      -..+...+..+...|..+|..|+.++..|+..+..+.+.+
T Consensus        21 Kk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll   60 (63)
T 1ci6_A           21 KRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLI   60 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455677788888899999999999999988888776554

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=88.94  E-value=11  Score=32.63  Aligned_cols=54  Identities=22%  Similarity=0.285  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMA  309 (448)
Q Consensus       256 ~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~a  309 (448)
                      .+..|+.++..|+..+..|...+.+|.+....|+...|..-.=++.+..|+..|
T Consensus        36 ~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~a   89 (111)
T 2v66_B           36 QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQA   89 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHH
Confidence            367789999999999999999999999999999999999888888888887765

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=88.91  E-value=6.8  Score=40.24  Aligned_cols=63  Identities=10%  Similarity=0.091  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 013166          258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGLN  320 (448)
Q Consensus       258 eeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~~ln  320 (448)
                      +.|+..+..++.+.+.+..++...+++..+...+-+.|+.++.+|++++....+.+.++...+
T Consensus       505 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~  567 (597)
T 3oja_B          505 DNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQET  567 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHH
Confidence            455566666666666677777777777666667777777888888888888877777776654

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=88.82  E-value=11  Score=35.35  Aligned_cols=51  Identities=14%  Similarity=0.023  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          263 QAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETV  313 (448)
Q Consensus       263 qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v  313 (448)
                      ++..|+.+...|+.....+..++..|+..|.-|......+...+..++...
T Consensus        89 ~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kl  139 (189)
T 2v71_A           89 QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRL  139 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHH
Confidence            355555555555555555555555555555555444444444444444333

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1

Probab=88.69  E-value=1.2  Score=33.85  Aligned_cols=37  Identities=16%  Similarity=0.237  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          276 KGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEET  312 (448)
Q Consensus       276 ~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~  312 (448)
                      ..+..|+.++..+..+|..|+.++..|+..+..+...
T Consensus        22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~   58 (61)
T 1t2k_D           22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL   58 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3466777788888889999988888888887766544

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=88.66  E-value=4.2  Score=34.45  Aligned_cols=52  Identities=17%  Similarity=0.238  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV  306 (448)
Q Consensus       255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kL  306 (448)
                      ..+..|+.++.....|...|..++..-+.+...++.++..|..+++.|.+-|
T Consensus        12 e~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasL   63 (97)
T 2eqb_B           12 EDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL   63 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566677777777777777777777777777778888888888888887764

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=88.64  E-value=7.6  Score=33.61  Aligned_cols=75  Identities=13%  Similarity=0.122  Sum_probs=57.5

Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          240 LSNRESARRSRRRKQAHLNELETQAGQLRA---EHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVK  314 (448)
Q Consensus       240 lsNRESARRSR~RKq~~LeeLE~qV~~Le~---ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~  314 (448)
                      ..|-.+|-..=..|+..+++|..++.+++.   ...-|+.++......|..-...-..|..+.+.|..+|..+...+.
T Consensus        30 ~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~  107 (110)
T 2v4h_A           30 RQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFN  107 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHH
Confidence            344456777777799999999999998888   777799999999888888777777777777777777666654443

>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}

Probab=88.10  E-value=6.4  Score=41.47  Aligned_cols=82  Identities=15%  Similarity=0.116  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHh-hcchh
Q 013166          255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAV-----------NNRILKADIETLRAKVKMAEETVKRVT-GLNPL  322 (448)
Q Consensus       255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~-----------EN~~Lkaql~~Lr~kLk~aE~~v~Rl~-~ln~~  322 (448)
                      ..+.+|..+...|+.+-..|+.+...+..++..+..           +-..|++++.+|..+++.+|+....+. .++.+
T Consensus        70 ~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~  149 (501)
T 1wle_A           70 PGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFYLR  149 (501)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334445455555555555555444444444443321           223566777777777776666555543 33444


Q ss_pred             hhhccCCCCCCCCC
Q 013166          323 LLARSDVPGVGMPL  336 (448)
Q Consensus       323 l~~~~~~~~~~~p~  336 (448)
                      +..+..++.-..|.
T Consensus       150 l~~iPN~~~~~vP~  163 (501)
T 1wle_A          150 ALRLPNQTHPDVPV  163 (501)
T ss_dssp             HTTSCCCCCTTCCC
T ss_pred             HHhCCCCCCCCCCC
Confidence            44444444334444

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=87.86  E-value=6.7  Score=36.14  Aligned_cols=70  Identities=16%  Similarity=0.186  Sum_probs=48.2

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          234 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAE  310 (448)
Q Consensus       234 KR~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE  310 (448)
                      |-...+..-=+.=||.|.+-.+.+.+|+.++..|+.|...++..+.       .+..+|+.|...+..|.......+
T Consensus        69 ke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~-------k~~~e~r~L~Ekl~~lEKe~a~~e  138 (168)
T 3o0z_A           69 KDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLE-------KVEGERKEAQDMLNHSEKEKNNLE  138 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhh
Confidence            3344555555666777777778788888877777777666655544       677888888888888777544444

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=87.46  E-value=5.4  Score=36.78  Aligned_cols=51  Identities=20%  Similarity=0.186  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          248 RSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIE  300 (448)
Q Consensus       248 RSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~  300 (448)
                      --|.||++  .+|...+..++..+..|..++..|......|..+...|.+++.
T Consensus        29 ~~rlkK~~--tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~   79 (168)
T 3o0z_A           29 AVRLRKSH--TEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILE   79 (168)
T ss_dssp             HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455554  5666666666666666666666666665556555555554443

>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}

Probab=87.10  E-value=3  Score=33.56  Aligned_cols=48  Identities=13%  Similarity=0.274  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK  305 (448)
Q Consensus       258 eeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~k  305 (448)
                      .++..+++.++.+|..|..++..+++.+..-..+-..++.++..|-..
T Consensus         3 ~~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~   50 (72)
T 3cve_A            3 HNSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEI   50 (72)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            367788999999999999999999999988888777787777766544

>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1

Probab=86.98  E-value=1.3  Score=35.38  Aligned_cols=26  Identities=12%  Similarity=0.172  Sum_probs=16.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          256 HLNELETQAGQLRAEHSSLLKGLTDV  281 (448)
Q Consensus       256 ~LeeLE~qV~~Le~ENs~L~~ql~~l  281 (448)
                      .+.+|+.....|..||..|+.++..|
T Consensus        37 ~v~~le~~~~~l~~en~~Lr~~i~~L   62 (70)
T 1gd2_E           37 QVVTLKELHSSTTLENDQLRQKVRQL   62 (70)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566666666777777776666543

>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}

Probab=86.95  E-value=2.8  Score=39.75  Aligned_cols=50  Identities=20%  Similarity=0.253  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013166          265 GQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTG  318 (448)
Q Consensus       265 ~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~~  318 (448)
                      ..--.||..|..+|..+...+..|..+|..|+.=++    +++.+.++++||.+
T Consensus       111 ~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae----~~q~la~vi~~l~~  160 (209)
T 2wvr_A          111 YEALKENEKLHKEIEQKDNEIARLKKENKELAEVAE----HVQYMAELIERLNG  160 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhc
Confidence            344458889999999888888888888888875444    44555666777754

>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A

Probab=86.94  E-value=0.68  Score=32.26  Aligned_cols=26  Identities=15%  Similarity=0.305  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          257 LNELETQAGQLRAEHSSLLKGLTDVN  282 (448)
Q Consensus       257 LeeLE~qV~~Le~ENs~L~~ql~~l~  282 (448)
                      +..||.+|+.|-.+|..|..++..|+
T Consensus         2 M~QLE~kVEeLl~~n~~Le~EV~RLk   27 (33)
T 3m48_A            2 MAQLEAKVEELLSKNWNLENEVARLK   27 (33)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            55678888888777777777776554

>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}

Probab=86.91  E-value=2.3  Score=31.16  Aligned_cols=24  Identities=25%  Similarity=0.310  Sum_probs=19.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          256 HLNELETQAGQLRAEHSSLLKGLT  279 (448)
Q Consensus       256 ~LeeLE~qV~~Le~ENs~L~~ql~  279 (448)
                      .+..||.+|..|+.||..|+++.-
T Consensus         4 lvaqlenevaslenenetlkkknl   27 (49)
T 3he5_A            4 LVAQLENEVASLENENETLKKKNL   27 (49)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcccHHHHHhcc
Confidence            356788999999999998887753

>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B

Probab=86.79  E-value=4.8  Score=33.97  Aligned_cols=78  Identities=13%  Similarity=0.152  Sum_probs=59.7

Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          239 MLSNRESARRSRRRKQAHLNELETQAGQLR---AEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKR  315 (448)
Q Consensus       239 mlsNRESARRSR~RKq~~LeeLE~qV~~Le---~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~R  315 (448)
                      +..|-.+|-..=..|+..+++|...+.+++   ..+.-|..++.....-|..-...-..|..+.+.|..+|..+...+.+
T Consensus         7 L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q~~~   86 (94)
T 3jsv_C            7 LRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNK   86 (94)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            344556777777789999999999888888   67777999999999999888888888888888887777666544444


Q ss_pred             H
Q 013166          316 V  316 (448)
Q Consensus       316 l  316 (448)
                      |
T Consensus        87 L   87 (94)
T 3jsv_C           87 L   87 (94)
T ss_dssp             -
T ss_pred             H
Confidence            3

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=86.53  E-value=6.1  Score=45.21  Aligned_cols=15  Identities=27%  Similarity=0.691  Sum_probs=8.2

Q ss_pred             cchhHHHHHHhhhhc
Q 013166           34 QSEWELEKFLQEVTV   48 (448)
Q Consensus        34 ~SEW~FerfLeE~~~   48 (448)
                      +.-|.|+.|++--..
T Consensus       699 p~R~~~~eF~~RY~~  713 (1080)
T 2dfs_A          699 PSRWTYQEFFSRYRV  713 (1080)
T ss_dssp             CEEEEHHHHHHHHTT
T ss_pred             CchhhHHHHHHHHHH
Confidence            334666666665433

>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1

Probab=86.52  E-value=0.81  Score=30.81  Aligned_cols=24  Identities=38%  Similarity=0.398  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          283 QKYDESAVNNRILKADIETLRAKV  306 (448)
Q Consensus       283 q~~~~L~~EN~~Lkaql~~Lr~kL  306 (448)
                      .-+..++.||..||+.+++|-+|+
T Consensus         6 allasleaenkqlkakveellakv   29 (31)
T 1p9i_A            6 ALLASLEAENKQLKAKVEELLAKV   29 (31)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            345578899999999999997775

>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y

Probab=86.46  E-value=3.5  Score=31.88  Aligned_cols=36  Identities=28%  Similarity=0.330  Sum_probs=24.4

Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          239 MLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSL  274 (448)
Q Consensus       239 mlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L  274 (448)
                      .-+||.++|++|.|=++.|+....-...-..||..|
T Consensus         6 ryknr~asrk~rakfkn~lqh~r~vaaaks~en~rl   41 (63)
T 2c9l_Y            6 RYKNRVAARKSRAKFKQLLQHYREVAAAKSSENDRL   41 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHH
Confidence            468999999999998877766554444434444443

>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B

Probab=86.21  E-value=1.2  Score=31.54  Aligned_cols=29  Identities=14%  Similarity=0.321  Sum_probs=20.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          256 HLNELETQAGQLRAEHSSLLKGLTDVNQK  284 (448)
Q Consensus       256 ~LeeLE~qV~~Le~ENs~L~~ql~~l~q~  284 (448)
                      ++..||.+|+.|-.+|+.|..++..|+..
T Consensus         2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~l   30 (36)
T 1kd8_B            2 KVKQLKAKVEELKSKLWHLKNKVARLKKK   30 (36)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            46678888888777777777776665543

>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A

Probab=85.89  E-value=4.2  Score=33.02  Aligned_cols=30  Identities=20%  Similarity=0.272  Sum_probs=18.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          279 TDVNQKYDESAVNNRILKADIETLRAKVKM  308 (448)
Q Consensus       279 ~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~  308 (448)
                      ..+.+++..|..||..|+.+|..|+..+..
T Consensus        39 ~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~   68 (78)
T 1gu4_A           39 LETQHKVLELTAENERLQKKVEQLSRELST   68 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555666667777666666666555433

>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A

Probab=85.82  E-value=7.5  Score=39.79  Aligned_cols=82  Identities=21%  Similarity=0.258  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcchhhhhccCCCCC
Q 013166          255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDES-AVNNRILKADIETLRAKVKMAEETVKRVT-GLNPLLLARSDVPGV  332 (448)
Q Consensus       255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L-~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~-~ln~~l~~~~~~~~~  332 (448)
                      ..+.+|..+...+..+-..|+.+...+..++... ..+-..|++++.+|..+++.+++....+. .++.++.....++.-
T Consensus        28 ~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~~~  107 (421)
T 1ses_A           28 EALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLEALLLQVPLPPWP  107 (421)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence            4455555555555555555555555555443320 11224566666666666666665555543 333444444444433


Q ss_pred             CCCC
Q 013166          333 GMPL  336 (448)
Q Consensus       333 ~~p~  336 (448)
                      ..|.
T Consensus       108 ~vp~  111 (421)
T 1ses_A          108 GAPV  111 (421)
T ss_dssp             TSCS
T ss_pred             CCCC
Confidence            4444

>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A

Probab=85.82  E-value=5  Score=34.27  Aligned_cols=52  Identities=23%  Similarity=0.311  Sum_probs=33.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhh
Q 013166          273 SLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGLNPLLL  324 (448)
Q Consensus       273 ~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~~ln~~l~  324 (448)
                      .|-++.-.|..++..++.||+.|+......-+++..++..|.||+..|+.|.
T Consensus        34 ELIqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~   85 (104)
T 3s9g_A           34 ELIKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLL   85 (104)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHH
Confidence            3444455555556666777777777666666666677777777776666553

>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}

Probab=85.75  E-value=1.8  Score=35.37  Aligned_cols=49  Identities=12%  Similarity=0.214  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK  305 (448)
Q Consensus       257 LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~k  305 (448)
                      .+++..+++.++.+|..|..++..+++.+..-..+-..++.++..|-..
T Consensus         8 ~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~   56 (79)
T 3cvf_A            8 REETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQL   56 (79)
T ss_dssp             --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3567788899999999999999999999888888777787777766544

>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*

Probab=85.41  E-value=1.2  Score=31.16  Aligned_cols=27  Identities=15%  Similarity=0.193  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          256 HLNELETQAGQLRAEHSSLLKGLTDVN  282 (448)
Q Consensus       256 ~LeeLE~qV~~Le~ENs~L~~ql~~l~  282 (448)
                      ++..||.+|..|-.+|+.|..++..|+
T Consensus         2 RMnQLE~kVEeLl~~n~~Le~eV~rLk   28 (34)
T 2oxj_A            2 RMXQLEXKVXELLXKNXHLEXEVXRLK   28 (34)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            466778888877777777766666544

>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A

Probab=85.09  E-value=12  Score=38.62  Aligned_cols=81  Identities=12%  Similarity=0.118  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHh-hcchhhhhccCCCCC
Q 013166          257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAV---NNRILKADIETLRAKVKMAEETVKRVT-GLNPLLLARSDVPGV  332 (448)
Q Consensus       257 LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~---EN~~Lkaql~~Lr~kLk~aE~~v~Rl~-~ln~~l~~~~~~~~~  332 (448)
                      +.+|..+...|+.+-..|+.+...+..++..+..   +-..|++++.+|..+++.+++....+. .++.++..+..++.-
T Consensus        33 ~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~~~  112 (455)
T 2dq0_A           33 ILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDYYLWRLPNITHP  112 (455)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCc
Confidence            3344444444444444444444444444433221   123456666666666666655554443 233444444444433


Q ss_pred             CCCCC
Q 013166          333 GMPLV  337 (448)
Q Consensus       333 ~~p~~  337 (448)
                      ..|.+
T Consensus       113 ~vP~g  117 (455)
T 2dq0_A          113 SVPVG  117 (455)
T ss_dssp             TSCCC
T ss_pred             cCCCC
Confidence            44443

>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A

Probab=85.06  E-value=7.8  Score=32.07  Aligned_cols=49  Identities=16%  Similarity=0.226  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMA  309 (448)
Q Consensus       259 eLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~a  309 (448)
                      ..-.+|..|+.+|..|..++..+.++...  .-.......+..||++|..+
T Consensus        20 syIdKVR~LEqqN~~Le~~i~~l~~~~~~--~~~~~ye~~i~~Lr~~i~~~   68 (93)
T 3s4r_A           20 NLIDKVRFLEQQNKILLAELEQLKGQGKS--RLGDLYEEEMRELRRQVDQL   68 (93)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCC--CcHHHHHHHHHHHHHHHHHH
Confidence            34456777788887777777766654221  11122344445555544443

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=84.43  E-value=5.4  Score=45.61  Aligned_cols=19  Identities=16%  Similarity=0.295  Sum_probs=7.2

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 013166          288 SAVNNRILKADIETLRAKV  306 (448)
Q Consensus       288 L~~EN~~Lkaql~~Lr~kL  306 (448)
                      +..+...|+.++.+|..++
T Consensus       918 l~~~~~~Le~~l~ele~el  936 (1184)
T 1i84_S          918 LAAKKQELEEILHEMEARI  936 (1184)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333

>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}

Probab=84.23  E-value=2.9  Score=31.35  Aligned_cols=37  Identities=16%  Similarity=0.126  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          261 ETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKA  297 (448)
Q Consensus       261 E~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lka  297 (448)
                      |.++..|+.-|..|..+++.|+..+..++.|+..|++
T Consensus         3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~   39 (48)
T 3vmx_A            3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNK   39 (48)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence            5678888888888888888888888877777766653

>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A

Probab=83.82  E-value=13  Score=39.00  Aligned_cols=60  Identities=18%  Similarity=0.092  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAV---NNRILKADIETLRAKVKMAEETVKRV  316 (448)
Q Consensus       257 LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~---EN~~Lkaql~~Lr~kLk~aE~~v~Rl  316 (448)
                      +.+|..+...|+.+-..|+.+...+..++..+..   +-..|++++.+|..+++.+|+.+..+
T Consensus        35 ~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~   97 (485)
T 3qne_A           35 IIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEA   97 (485)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444443333221   11345555555555555555544443

>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}

Probab=83.80  E-value=4.2  Score=33.30  Aligned_cols=42  Identities=14%  Similarity=0.086  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          265 GQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV  306 (448)
Q Consensus       265 ~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kL  306 (448)
                      ..--.||..|..++..+...+..+..||+.|+.=+...+.-.
T Consensus        30 ~eaL~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~~~la   71 (79)
T 2zxx_A           30 YEALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQYMA   71 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334458999999999999999999999999876555554433

>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A

Probab=83.76  E-value=16  Score=29.72  Aligned_cols=52  Identities=23%  Similarity=0.304  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV  306 (448)
Q Consensus       255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kL  306 (448)
                      ....+|+.+...|..+...|..++.++..++..|......|..++..|..+|
T Consensus        35 ~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~rl   86 (89)
T 3bas_A           35 RIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLV   86 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4446677777777777777777766666676666666666666666665443

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=83.22  E-value=11  Score=32.51  Aligned_cols=20  Identities=25%  Similarity=0.393  Sum_probs=8.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 013166          259 ELETQAGQLRAEHSSLLKGL  278 (448)
Q Consensus       259 eLE~qV~~Le~ENs~L~~ql  278 (448)
                      +|..++..|+.|+..++.++
T Consensus         7 dL~~~~~~L~~E~e~~k~K~   26 (111)
T 2v66_B            7 DLQADNQRLKYEVEALKEKL   26 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444333

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A

Probab=83.06  E-value=1.4  Score=33.78  Aligned_cols=35  Identities=17%  Similarity=0.247  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          276 KGLTDVNQKYDESAVNNRILKADIETLRAKVKMAE  310 (448)
Q Consensus       276 ~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE  310 (448)
                      ..+..|..++..|..+|..|+.++..|+..+..+.
T Consensus        22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk   56 (62)
T 1jnm_A           22 ERIARLEEKVKTLKAQNSELASTANMLREQVAQLK   56 (62)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45567777888888899988888888877765543

>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A

Probab=82.80  E-value=5.7  Score=34.78  Aligned_cols=35  Identities=31%  Similarity=0.373  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhc
Q 013166          292 NRILKADIETLRAKVKMAEETVKRVTGLNPLLLAR  326 (448)
Q Consensus       292 N~~Lkaql~~Lr~kLk~aE~~v~Rl~~ln~~l~~~  326 (448)
                      =..|+-+|..|.++|+.++..|.||+.-|..++..
T Consensus        73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r  107 (121)
T 3mq7_A           73 VEELEGEITTLNHKLQDASAEVERLRRENQVLSVR  107 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhH
Confidence            44566677777777777888888888888776655

>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A

Probab=82.64  E-value=1.8  Score=30.70  Aligned_cols=28  Identities=14%  Similarity=0.305  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          256 HLNELETQAGQLRAEHSSLLKGLTDVNQ  283 (448)
Q Consensus       256 ~LeeLE~qV~~Le~ENs~L~~ql~~l~q  283 (448)
                      ++..||.+|..|..+|+.|..++..|+.
T Consensus         2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~   29 (36)
T 1kd8_A            2 EVKQLEAEVEEIESEVWHLENEVARLEK   29 (36)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            4567788888777777777776665554

>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}

Probab=82.28  E-value=3.3  Score=31.97  Aligned_cols=36  Identities=17%  Similarity=0.138  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          261 ETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILK  296 (448)
Q Consensus       261 E~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lk  296 (448)
                      |.++..|+.-|-+|..++..|+.++...+.|+.+|.
T Consensus        10 e~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~   45 (58)
T 3a2a_A           10 ERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLN   45 (58)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            556777777888888888877777777777666655

>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A

Probab=82.25  E-value=8.7  Score=31.43  Aligned_cols=41  Identities=12%  Similarity=0.192  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKA  297 (448)
Q Consensus       257 LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lka  297 (448)
                      +-+|..++..|+.|...|+-+++.+..++..+....+.+-.
T Consensus        22 ~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~   62 (83)
T 2xdj_A           22 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILL   62 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555555555555555444444444443333

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=81.82  E-value=4.7  Score=51.10  Aligned_cols=56  Identities=13%  Similarity=0.227  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013166          262 TQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVT  317 (448)
Q Consensus       262 ~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~  317 (448)
                      .++..++.+...|..++..|+.+|..+..|-..|+.+++..+.||..|+..+.-|.
T Consensus      2028 ~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~ 2083 (3245)
T 3vkg_A         2028 LKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLN 2083 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            34444555555666666677777777777777788888777777777766655543

>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*

Probab=81.78  E-value=7.8  Score=33.55  Aligned_cols=26  Identities=15%  Similarity=0.308  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          255 AHLNELETQAGQLRAEHSSLLKGLTD  280 (448)
Q Consensus       255 ~~LeeLE~qV~~Le~ENs~L~~ql~~  280 (448)
                      .-+++|..++.+|+.||..|++++..
T Consensus         8 ~t~EeLaaeL~kLqmENK~LKkkl~~   33 (110)
T 2oa5_A            8 KTYEEMVKEVERLKLENKTLKQKVKS   33 (110)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            45799999999999999999999973

>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}

Probab=81.68  E-value=4.6  Score=29.52  Aligned_cols=35  Identities=14%  Similarity=0.297  Sum_probs=19.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          279 TDVNQKYDESAVNNRILKADIETLRAKVKMAEETV  313 (448)
Q Consensus       279 ~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v  313 (448)
                      .+|..+...++..|..|..++.+|...-.|++..+
T Consensus         6 ~eLE~r~k~le~~naeLEervstLq~EN~mLRqvl   40 (42)
T 2oqq_A            6 SELENRVKDLENKNSELEERLSTLQNENQMLRHIL   40 (42)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence            44555555556666666666666666555555443

>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}

Probab=81.66  E-value=13  Score=31.79  Aligned_cols=14  Identities=36%  Similarity=0.570  Sum_probs=9.4

Q ss_pred             CchHHHHHHHHHHh
Q 013166          229 DSVDDKRARRMLSN  242 (448)
Q Consensus       229 d~~d~KR~RRmlsN  242 (448)
                      ...++|=+|-|++|
T Consensus         5 ~EvEEKyrKAMVsn   18 (103)
T 4h22_A            5 AEVEEKYKKAMVSN   18 (103)
T ss_dssp             ---CCTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            34577888889998

>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}

Probab=81.65  E-value=7.4  Score=28.82  Aligned_cols=44  Identities=18%  Similarity=0.222  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          270 EHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETV  313 (448)
Q Consensus       270 ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v  313 (448)
                      .|.-|++++..|.....+|+.+...|..-+..||..+..+|.+|
T Consensus         4 rnaylrkkiarlkkdnlqlerdeqnlekiianlrdeiarlenev   47 (52)
T 3he5_B            4 RNAYLRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLENEV   47 (52)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHH
Confidence            35556666666666556666666666666666766666666555

>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1

Probab=81.53  E-value=2.2  Score=29.87  Aligned_cols=27  Identities=4%  Similarity=0.062  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          256 HLNELETQAGQLRAEHSSLLKGLTDVN  282 (448)
Q Consensus       256 ~LeeLE~qV~~Le~ENs~L~~ql~~l~  282 (448)
                      ++..||.+|+.|-.+|..|..++..|+
T Consensus         2 RMnQLEdKVEeLl~~~~~Le~EV~RLk   28 (34)
T 3c3f_A            2 RMXQIEXKLEXILSXLYHXENEXARIX   28 (34)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            466777777777777777766666544

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=81.43  E-value=16  Score=34.47  Aligned_cols=53  Identities=9%  Similarity=0.137  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAE  310 (448)
Q Consensus       258 eeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE  310 (448)
                      ..|+.++..++.+...|..++..+..+...+..+=..+++++..++..+..++
T Consensus        93 ~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~  145 (256)
T 3na7_A           93 RSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELE  145 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444444444444445555555555554443

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=81.13  E-value=8.9  Score=43.87  Aligned_cols=23  Identities=17%  Similarity=0.049  Sum_probs=10.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 013166          290 VNNRILKADIETLRAKVKMAEET  312 (448)
Q Consensus       290 ~EN~~Lkaql~~Lr~kLk~aE~~  312 (448)
                      .+-..|..++..|+.++..+++.
T Consensus       913 ~~l~~l~~~~~~Le~~l~ele~e  935 (1184)
T 1i84_S          913 EMRVRLAAKKQELEEILHEMEAR  935 (1184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444433

>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}

Probab=81.05  E-value=4.7  Score=41.06  Aligned_cols=30  Identities=3%  Similarity=0.054  Sum_probs=11.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013166          288 SAVNNRILKADIETLRAKVKMAEETVKRVT  317 (448)
Q Consensus       288 L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~  317 (448)
                      +..+++.|++++.+.+.+.+.+..++..+.
T Consensus        29 ~~~~~~~~~~~~~~~~~~rr~l~n~~~elk   58 (403)
T 4etp_A           29 TELGMKELNEILIKEETVRRTLHNELQELR   58 (403)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            333333343333333333333333343343

>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}

Probab=81.04  E-value=5.7  Score=32.10  Aligned_cols=50  Identities=16%  Similarity=0.253  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA  304 (448)
Q Consensus       255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~  304 (448)
                      .+|.+-+.++..|+....-=.+-.+.|+-.+-.+..||+.|..++..|.+
T Consensus        25 ~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~~   74 (75)
T 3a7o_A           25 KELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDLKK   74 (75)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHhc
Confidence            34455555566666555555555667777788899999999998888754

>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}

Probab=80.95  E-value=16  Score=29.77  Aligned_cols=61  Identities=15%  Similarity=0.206  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          251 RRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEE  311 (448)
Q Consensus       251 ~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~  311 (448)
                      +|=++.+..-..+++.|+.=...|..--..+...+..+..|-..|...++.|+.|.+.++.
T Consensus        14 rrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~   74 (78)
T 3iv1_A           14 WRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELSS   74 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334677777788888888888888877778888888899999999999999988877664

>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A

Probab=80.89  E-value=12  Score=30.52  Aligned_cols=49  Identities=14%  Similarity=0.088  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          262 TQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAE  310 (448)
Q Consensus       262 ~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE  310 (448)
                      .....|+..+..|..+..+|..++..+..-...|.++-.+|..+|+.++
T Consensus        35 ~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~   83 (89)
T 3bas_A           35 RIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLK   83 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444444444444444444444444444444444444443

>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}

Probab=80.85  E-value=0.14  Score=42.93  Aligned_cols=25  Identities=28%  Similarity=0.267  Sum_probs=21.9

Q ss_pred             hHHHHHHHHHHhhHHHHHHHHHHHH
Q 013166          231 VDDKRARRMLSNRESARRSRRRKQA  255 (448)
Q Consensus       231 ~d~KR~RRmlsNRESARRSR~RKq~  255 (448)
                      .-.|.+||..+||.+|+++|+||..
T Consensus        63 ~lIrdiRRRgKNKvAAqnCRKRKld   87 (91)
T 2kz5_A           63 ALVRDIRRRGKNKVAAQNYRKRKLE   87 (91)
T ss_dssp             HHHHHHHHHHHHHHHTTSCCCCCCC
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            3578899999999999999999853

>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}

Probab=80.76  E-value=4.1  Score=32.88  Aligned_cols=25  Identities=32%  Similarity=0.311  Sum_probs=13.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          255 AHLNELETQAGQLRAEHSSLLKGLT  279 (448)
Q Consensus       255 ~~LeeLE~qV~~Le~ENs~L~~ql~  279 (448)
                      ++|.+||.++..++.-...|...+.
T Consensus        14 ~Ri~~LE~klAfqE~tIeeLn~~v~   38 (78)
T 3efg_A           14 ARLVELETRLSFQEQALTELSEALA   38 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455666666655555555544444

>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}

Probab=80.36  E-value=7.9  Score=31.37  Aligned_cols=49  Identities=14%  Similarity=0.200  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMA  309 (448)
Q Consensus       258 eeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~a  309 (448)
                      ++||.+|..|+.-...|..++..|..+|.   .-...||++|..|..+++..
T Consensus         3 ~dlEEKv~~LE~sld~LQTrfARLLaEy~---ssQ~KLKqRit~LE~~~~~~   51 (74)
T 3swf_A            3 MGLEEKVTRMESSVDLLQTRFARILAEYE---SMQQKLKQRLTKVEKFLKPL   51 (74)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhccc
Confidence            46788888888777777777776655544   34456888888888777663

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D

Probab=80.29  E-value=2.1  Score=33.23  Aligned_cols=32  Identities=22%  Similarity=0.363  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          275 LKGLTDVNQKYDESAVNNRILKADIETLRAKV  306 (448)
Q Consensus       275 ~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kL  306 (448)
                      ...+..|..++..|..+|..|+.++..|+..|
T Consensus        29 ~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l   60 (63)
T 2dgc_A           29 LQRMKQLEDKVEELLSKNYHLENEVARLKKLV   60 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566777788888899999999999887765

>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A

Probab=80.19  E-value=14  Score=29.91  Aligned_cols=56  Identities=11%  Similarity=0.087  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          252 RKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVK  307 (448)
Q Consensus       252 RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk  307 (448)
                      |-...++++...+..|+.+...++..+....+.|..|..=.-.|-.+|.+.|+-|.
T Consensus        25 ~~~~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYRkLLE   80 (86)
T 1x8y_A           25 SLARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLE   80 (86)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHc
Confidence            33456778888888899999999999998889999999888889999999876553

>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A

Probab=80.14  E-value=6.9  Score=29.48  Aligned_cols=21  Identities=33%  Similarity=0.502  Sum_probs=9.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 013166          259 ELETQAGQLRAEHSSLLKGLT  279 (448)
Q Consensus       259 eLE~qV~~Le~ENs~L~~ql~  279 (448)
                      +|..++..|...|..|...+.
T Consensus        13 ~l~~~l~~L~~rN~rL~~~L~   33 (51)
T 3m91_A           13 QLEARIDSLAARNSKLMETLK   33 (51)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	448
d1sknp_	74	Skn-1 {Caenorhabditis elegans [TaxId: 6239]}	89.0
d1seta1	110	Seryl-tRNA synthetase (SerRS) {Thermus thermophilu	86.94

>d1sknp_ a.37.1.1 (P:) Skn-1 {Caenorhabditis elegans [TaxId: 6239]}

class: All alpha proteins
fold: A DNA-binding domain in eukaryotic transcription factors
superfamily: A DNA-binding domain in eukaryotic transcription factors
family: A DNA-binding domain in eukaryotic transcription factors
domain: Skn-1
species: Caenorhabditis elegans [TaxId: 6239]

Probab=89.00  E-value=0.092  Score=40.64  Aligned_cols=28  Identities=25%  Similarity=0.338  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 013166          232 DDKRARRMLSNRESARRSRRRKQAHLNE  259 (448)
Q Consensus       232 d~KR~RRmlsNRESARRSR~RKq~~Lee  259 (448)
                      -.+-+||.=+|+.+|+++|+||....++
T Consensus        46 lirDIRRRGKNKvAAqnCRKRKld~~d~   73 (74)
T d1sknp_          46 LIRKIRRRGKNKVAARTCRQRRTDRHDK   73 (74)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHhcccHHHHHHHHHhhhhhhcc
Confidence            3677899999999999999999877654

>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: tRNA-binding arm
family: Seryl-tRNA synthetase (SerRS)
domain: Seryl-tRNA synthetase (SerRS)
species: Thermus thermophilus, strain hb27 [TaxId: 274]

Probab=86.94  E-value=5.5  Score=31.06  Aligned_cols=61  Identities=16%  Similarity=0.207  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166          256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDES-AVNNRILKADIETLRAKVKMAEETVKRV  316 (448)
Q Consensus       256 ~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L-~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl  316 (448)
                      .+-+|..+...|..+-..|+.+...+..++..+ ..+...|++++..|..+++.++...+.+
T Consensus        29 ~i~~ld~~rr~l~~~~e~l~~~rN~~sk~i~k~~~~~~~~l~~~~k~lk~~i~~le~~~~~~   90 (110)
T d1seta1          29 ALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREK   90 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444444333221 1223345555555555555555554443