Citrus Sinensis ID: 013175

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------45

MEVDTVVQIYADSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNLSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFADVYQWASYSEKMKIRVCLFFPLETWSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVADINPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEVSASIEATYVSGVQAYP

cHHHHHHHHHHHcccccEEEEccccccccccccccHHHHHHHccccEEEEEEcccHHHHHHHHHHHHcccccccccccccEEEEcccccccEEEHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccEEEEcccccccccccccHHHHHHHHHHHHHcccccEEEEEccccccHHHHHHHHHHHcccccccEEEcEEEEEEccccccccccccccccccccccccccccHHHHHHHHHHHHHccccEEEEEccHHHHHHHHHHHHHHHHHcccccccccEEEcccccHHHHHHHHHcccEEEEccccccccHHHHHHHHcHHHHHHHccHHHHHHHcccccccccccccccccHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccEEEEcccccccccccccccccEEEEccEEEcc

cHHHHHHHHHHHcccccEEEEccccHHHcccccccHHHHHHHcccccEEEEEEccHHHHHHHHHHHHHccccccccccccEEEEccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccEEEEccccccccccccccHHHHHHHHHHHHcccccEEEEEEEccccHHHHHHHHcccccccccEEEEcEEEEEEccccccccHHHcccccccccccccEcccHHHHHHHHHHHHHccccEEEEEccHHHHHHHHHHHHHHHHHcccccccccEEEcEEccHHHHHHHHHccccccccccHHcccHHHHHHHHcHHHHHHHcHHHHHHHHcccEEEEccccccccccccHHHHHHEccccccccccccHHHcccHHHHHHHHHHcHHHHHHHcccccEEccccEEEEEEEccccccccHHHccEEEEEEEEccEEEcc

MEVDTVVQIYADskkgswilgggwnndlwggdlpmaswidditphnpvwlsrmdghmgLANSVALQLVGitnlsedpnggtimktssgeptGLLIDAAMKLIlpwipevsvDERREALLRASNLAlsrgvttvvdfgryypgesvqlswEDFADVYQWASYSEKMKIRVCLFFPLETWSSLADLINKTGHVLSDWVYLGGVkafadgslgsnsalfhepyadephnyglQVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLasgtaarfgdqgivasmqpqhlldDADSARKKLGVDRAERESYLFQSLLANNALLalgsdwpvadinpLCAIRTAmkrippgwdnawipseriSLTDALIAHTLSAARACFlendvgslspgkiADFVILSTSSWEDFAAEVSASIEATYVSGVQAYP

MEVDTVVQIYadskkgswilgGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNLSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRAsnlalsrgvttvvDFGRYYpgesvqlsweDFADVYQWASYSEKMKIRVCLFFPLETWSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVADINPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEVSASIEATYVSGVQAYP

MEVDTVVQIYADSKKGSWIlgggwnndlwggdlPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNLSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDerreallrasnlalsrGVTTVVDFGRYYPGESVQLSWEDFADVYQWASYSEKMKIRVCLFFPLETWSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSllannallalGSDWPVADINPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEVSASIEATYVSGVQAYP

****TVVQIYADSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNL*****************TGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFADVYQWASYSEKMKIRVCLFFPLETWSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIV**************************ESYLFQSLLANNALLALGSDWPVADINPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEVSASIEATYVS******

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		448	2.2.26 [Sep-21-2011]
O34355		529	Putative amidohydrolase Y	yes	no	0.917	0.776	0.320	3e-47
Q68AP4		542	N-substituted formamide d	N/A	no	0.921	0.761	0.263	1e-22
Q06555		465	Exoenzymes regulatory pro	N/A	no	0.524	0.505	0.243	5e-09

>sp\|O34355\|YTCJ_BACSU Putative amidohydrolase YtcJ OS=Bacillus subtilis (strain 168) GN=ytcJ PE=4 SV=1	Back alignment and function desciption

 Score =  189 bits (481), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 143/446 (32%), Positives = 217/446 (48%), Gaps = 35/446 (7%)

Query: 15  KGSWILGGGWN-NDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNL 73
           K  W++G GWN N     D      +D + P  PV L R+  H    NS ALQ  GI+  
Sbjct: 103 KNDWLIGEGWNENQFETPDYLTKHDLDRLFPDRPVLLKRICRHAIAVNSAALQAAGISRN 162

Query: 74  SEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTV 133
           + DP+GG I+K ++GEPTGLL D A  LIL  +P VS     EAL  A     ++G+T  
Sbjct: 163 TPDPDGGVIVKDANGEPTGLLFDKAQDLILKAVPPVSQHYVDEALTAAIKDCWTKGLTG- 221

Query: 134 VDFGRYYPGESVQLSWEDFADV------YQWASYSEKMKIRVCLFFPLET---WSSLADL 184
                   G S  LS+  + DV      Y+ A+   K   R  L    E    W  L  L
Sbjct: 222 --------GHSEDLSY--YGDVSVPMKAYEKAAAGGKYPFRCHLLVHHEAVDRWEQLEKL 271

Query: 185 INKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMAS 244
                     +V  G +K FADG+LG  +AL  EPY D+P   G+QV + E+L  +   +
Sbjct: 272 SGP-------YVEFGAMKIFADGALGGRTALLKEPYQDDPSTNGVQVHDDETLGRLIRKA 324

Query: 245 DKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIV 304
            + G++VA+HAIGD A + VL+  +      G+ D   R+ HAQ L +    R     I 
Sbjct: 325 REKGMEVAVHAIGDLAFEKVLNAIEKHPPKNGRHD---RLIHAQVLDNELIERAARMPIA 381

Query: 305 ASMQPQHLLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVADINPLCAIRT 364
             +QP  +  D      +LG DR  + ++ +++L++   L A GSD P+  ++PL  I++
Sbjct: 382 LDLQPHFVASDFPWVIDRLGKDRM-KTAFAWKTLISKGILCAGGSDAPIEPVDPLLGIQS 440

Query: 365 AMKRIPPGWDN--AWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILST 422
           A+ R      N  ++  SE + + +A+  +T  +A   + E   G ++ G  ADF +LS 
Sbjct: 441 AVLRKSSHEQNGPSYNESECLPVYEAIKLYTEGSAGIIYKEKSRGKIAEGYDADFTVLSG 500

Query: 423 SSWEDFAAEVS-ASIEATYVSGVQAY 447
             +    A++    I+ T ++G   Y
Sbjct: 501 DPFAIDPAQLHLLEIKKTVINGQIVY 526

Bacillus subtilis (strain 168) (taxid: 224308)
EC: 3EC: .EC: 5EC: .EC: -EC: .EC: -

>sp\|Q68AP4\|NFDA_ARTPS N-substituted formamide deformylase OS=Arthrobacter pascens GN=nfdA PE=1 SV=1	Back alignment and function description

>sp\|Q06555\|AEPA_PECCC Exoenzymes regulatory protein AepA OS=Pectobacterium carotovorum subsp. carotovorum GN=aepA PE=4 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		448
255543987		574	Exoenzymes regulatory protein aepA precu	0.970	0.757	0.781	0.0
359495042		578	PREDICTED: putative amidohydrolase ytcJ-	0.995	0.771	0.766	0.0
224075862		517	predicted protein [Populus trichocarpa]	0.993	0.860	0.746	0.0
356546356		578	PREDICTED: putative amidohydrolase ytcJ-	0.973	0.754	0.733	0.0
449449292		545	PREDICTED: putative amidohydrolase YtcJ-	0.995	0.818	0.699	0.0
297820330		576	LAF3/LAF3 ISF1/LAF3 ISF2 [Arabidopsis ly	0.988	0.769	0.708	0.0
186511115		576	amidohydrolase family protein [Arabidops	0.975	0.758	0.713	0.0
31616517		576	LAF3 isoform 2 [Arabidopsis thaliana]	0.975	0.758	0.713	0.0
186511117		583	amidohydrolase family protein [Arabidops	0.975	0.749	0.713	0.0
31616515		583	LAF3 isoform 1 [Arabidopsis thaliana]	0.975	0.749	0.713	1e-180

>gi\|255543987\|ref\|XP_002513056.1\| Exoenzymes regulatory protein aepA precursor, putative [Ricinus communis] gi\|223548067\|gb\|EEF49559.1\| Exoenzymes regulatory protein aepA precursor, putative [Ricinus communis]	Back alignment and taxonomy information

 Score =  723 bits (1865), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/435 (78%), Positives = 391/435 (89%)

Query: 14  KKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNL 73
           K+GSW+LGGGWNNDLWGG+LP ASWIDDI P NPVWL+RMDGHMGLANSVAL+L GI NL
Sbjct: 140 KEGSWVLGGGWNNDLWGGELPAASWIDDIAPKNPVWLTRMDGHMGLANSVALKLAGINNL 199

Query: 74  SEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRASNLALSRGVTTV 133
            EDPNGGTIM++++GEPTGL+IDAAMKLIL +IPEVSVDE+REALL A NLAL RGVTTV
Sbjct: 200 LEDPNGGTIMRSANGEPTGLIIDAAMKLILSYIPEVSVDEKREALLIAGNLALMRGVTTV 259

Query: 134 VDFGRYYPGESVQLSWEDFADVYQWASYSEKMKIRVCLFFPLETWSSLADLINKTGHVLS 193
           VDFGRY+PG SV+ SWED +DVYQWA    KM+IRVCLFFP+ETWS L+DLI K G  LS
Sbjct: 260 VDFGRYFPGASVEHSWEDLSDVYQWADSLGKMRIRVCLFFPMETWSRLSDLITKVGRALS 319

Query: 194 DWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAI 253
           DW+YLGGVKAFADGSLGSNSALF+EPY  EPHNYGLQV ++E+L +MT+ASDK GLQVAI
Sbjct: 320 DWIYLGGVKAFADGSLGSNSALFYEPYIGEPHNYGLQVTDVENLFNMTVASDKVGLQVAI 379

Query: 254 HAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQHLL 313
           HAIGDRAND+VLDMY+SVV T GKRD+RFRIEHAQHLASGTAARFG+QGI+AS+QP HLL
Sbjct: 380 HAIGDRANDMVLDMYESVVSTNGKRDRRFRIEHAQHLASGTAARFGEQGIIASVQPDHLL 439

Query: 314 DDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVADINPLCAIRTAMKRIPPGW 373
           DDADSA KKLG+DRA+  SY F+SLL++NA LALGSDWPVA+INPL  I+TA+KRIPPGW
Sbjct: 440 DDADSAIKKLGMDRAQNGSYQFRSLLSSNAQLALGSDWPVANINPLGGIKTAVKRIPPGW 499

Query: 374 DNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEVS 433
           +NAWIPSE +SL DA+IAHT+SAARACFL+ D+GSLSPGK+ADFVILST+SW+DF  E S
Sbjct: 500 ENAWIPSECLSLKDAIIAHTISAARACFLDCDLGSLSPGKLADFVILSTNSWDDFETEAS 559

Query: 434 ASIEATYVSGVQAYP 448
           A++EATYV+G QAYP
Sbjct: 560 AAVEATYVAGAQAYP 574

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359495042\|ref\|XP_002265500.2\| PREDICTED: putative amidohydrolase ytcJ-like [Vitis vinifera] gi\|296090331\|emb\|CBI40150.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224075862\|ref\|XP_002304801.1\| predicted protein [Populus trichocarpa] gi\|222842233\|gb\|EEE79780.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356546356\|ref\|XP_003541592.1\| PREDICTED: putative amidohydrolase ytcJ-like [Glycine max]	Back alignment and taxonomy information

>gi\|449449292\|ref\|XP_004142399.1\| PREDICTED: putative amidohydrolase YtcJ-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|297820330\|ref\|XP_002878048.1\| LAF3/LAF3 ISF1/LAF3 ISF2 [Arabidopsis lyrata subsp. lyrata] gi\|297323886\|gb\|EFH54307.1\| LAF3/LAF3 ISF1/LAF3 ISF2 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|186511115\|ref\|NP_567027.2\| amidohydrolase family protein [Arabidopsis thaliana] gi\|332645927\|gb\|AEE79448.1\| amidohydrolase family protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|31616517\|gb\|AAP55750.1\| LAF3 isoform 2 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|186511117\|ref\|NP_974445.2\| amidohydrolase family protein [Arabidopsis thaliana] gi\|332645928\|gb\|AEE79449.1\| amidohydrolase family protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|31616515\|gb\|AAP55749.1\| LAF3 isoform 1 [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		448
TAIR\|locus:2081998		583	LAF3 "LAF3 ISOFORM 2" [Arabido	0.975	0.749	0.640	2.9e-151
TIGR_CMR\|CPS_2795		557	CPS_2795 "amidohydrolase famil	0.957	0.770	0.313	3.3e-47
UNIPROTKB\|Q0BWH5		551	HNE_3497 "Putative lipoprotein	0.533	0.433	0.353	1.8e-42
UNIPROTKB\|Q5LQG1		554	SPO2529 "Uncharacterized prote	0.522	0.422	0.366	3.6e-37
TIGR_CMR\|SPO_2529		554	SPO_2529 "conserved hypothetic	0.522	0.422	0.366	3.6e-37
UNIPROTKB\|Q81KU4		522	BAS4541 "Uncharacterized prote	0.555	0.477	0.291	2.7e-29
TIGR_CMR\|BA_4894		522	BA_4894 "conserved hypothetica	0.555	0.477	0.291	2.7e-29
ASPGD\|ASPL0000004201		549	AN10795 [Emericella nidulans (	0.892	0.728	0.275	4e-29
UNIPROTKB\|Q5LKR5		551	Q5LKR5 "Amidohydrolase domain	0.883	0.718	0.288	2.5e-27
TIGR_CMR\|SPO_A0316		551	SPO_A0316 "amidohydrolase doma	0.883	0.718	0.288	2.5e-27

TAIR\|locus:2081998 LAF3 "LAF3 ISOFORM 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1476 (524.6 bits), Expect = 2.9e-151, P = 2.9e-151
 Identities = 280/437 (64%), Positives = 336/437 (76%)

Query:    12 DSKKGSWIXXXXXXXXXXXXXXPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGIT 71
             ++K+GSWI              P ASWID+I+P NPVWL RMDGHM LANS+AL++ G+ 
Sbjct:   147 NAKEGSWILGGGWNNDFWGGELPSASWIDEISPRNPVWLIRMDGHMALANSLALKIAGVI 206

Query:    72 NLSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDXXXXXXXXXXXXXXXXGVT 131
             +L+EDP GGTIM+  SGEPTGLLIDAAM+L+ PW+ E+SVD                GVT
Sbjct:   207 SLTEDPVGGTIMRMPSGEPTGLLIDAAMELVTPWVKEISVDERREALFRASKYALTRGVT 266

Query:   132 TVVDFGRYYPGESVQLSWEDFADVYQWASYSEKMKIRVCLFFPLETWSSLADLINKTGHV 191
             TV+D GRY+PG + +LSW+DF DVY +A  S+KM IR CLFFP+ TWS L DL  + G V
Sbjct:   267 TVIDLGRYFPGTTDELSWKDFQDVYLYADSSKKMMIRTCLFFPITTWSRLLDLKLQKGSV 326

Query:   192 LSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQV 251
             LS+W+YLGGVKAF DGSLGSNSALF+E Y D P+NYGL+VM+ E L + TMA+DKSGLQV
Sbjct:   327 LSEWLYLGGVKAFIDGSLGSNSALFYEEYIDTPNNYGLEVMDPEKLSNFTMAADKSGLQV 386

Query:   252 AIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQH 311
             AIHAIGD+AND++LDMY+SV    G RD+RFRIEHAQHLA G+A RFG   IVAS+QP H
Sbjct:   387 AIHAIGDKANDMILDMYESVAAANGDRDRRFRIEHAQHLAPGSANRFGQLHIVASVQPDH 446

Query:   312 LLDDADSARKKLGVDRAERESYLFQSXXXXXXXXXXGSDWPVADINPLCAIRTAMKRIPP 371
             LLDDADS  KKLG +RA +ESYLFQS          GSDWPVADINPL +IRTA+KRIPP
Sbjct:   447 LLDDADSVAKKLGSERAVKESYLFQSLLNGNALLALGSDWPVADINPLHSIRTAVKRIPP 506

Query:   372 GWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAE 431
              WD+AWIPSERIS TDALIA T+SAARA FL++ +GSLSPGK+ADFVILST+SW++F+ +
Sbjct:   507 KWDHAWIPSERISFTDALIAQTISAARAAFLDHHLGSLSPGKLADFVILSTNSWDEFSKD 566

Query:   432 VSASIEATYVSGVQAYP 448
             VSAS+ ATYV G Q YP
Sbjct:   567 VSASVLATYVGGKQLYP 583

GO:0005737 "cytoplasm" evidence=ISM

GO:0016787 "hydrolase activity" evidence=ISS

GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0007346 "regulation of mitotic cell cycle" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TIGR_CMR\|CPS_2795 CPS_2795 "amidohydrolase family protein" [Colwellia psychrerythraea 34H (taxid:167879)]	Back alignment and assigned GO terms

UNIPROTKB\|Q0BWH5 HNE_3497 "Putative lipoprotein" [Hyphomonas neptunium ATCC 15444 (taxid:228405)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5LQG1 SPO2529 "Uncharacterized protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]	Back alignment and assigned GO terms

TIGR_CMR\|SPO_2529 SPO_2529 "conserved hypothetical protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]	Back alignment and assigned GO terms

UNIPROTKB\|Q81KU4 BAS4541 "Uncharacterized protein" [Bacillus anthracis (taxid:1392)]	Back alignment and assigned GO terms

TIGR_CMR\|BA_4894 BA_4894 "conserved hypothetical protein" [Bacillus anthracis str. Ames (taxid:198094)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000004201 AN10795 [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5LKR5 Q5LKR5 "Amidohydrolase domain protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]	Back alignment and assigned GO terms

TIGR_CMR\|SPO_A0316 SPO_A0316 "amidohydrolase domain protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		448
cd01300		479	cd01300, YtcJ_like, YtcJ_like metal dependent amid	1e-145
COG1574		535	COG1574, COG1574, Predicted metal-dependent hydrol	1e-101
pfam07969		392	pfam07969, Amidohydro_3, Amidohydrolase family	1e-44
cd01292		275	cd01292, metallo-dependent_hydrolases, Superfamily	7e-18
cd01309		359	cd01309, Met_dep_hydrolase_C, Metallo-dependent hy	8e-09
pfam01979		307	pfam01979, Amidohydro_1, Amidohydrolase family	8e-08
cd01296		371	cd01296, Imidazolone-5PH, Imidazolonepropionase/im	1e-06
COG1228		406	COG1228, HutI, Imidazolonepropionase and related a	1e-06
PRK09228		433	PRK09228, PRK09228, guanine deaminase; Provisional	7e-06
cd00854		374	cd00854, NagA, N-acetylglucosamine-6-phosphate dea	9e-06
PRK09356		406	PRK09356, PRK09356, imidazolonepropionase; Validat	5e-05
PRK08204		449	PRK08204, PRK08204, hypothetical protein; Provisio	8e-05
TIGR01224		377	TIGR01224, hutI, imidazolonepropionase	3e-04
cd01295		422	cd01295, AdeC, Adenine deaminase (AdeC) directly d	3e-04
COG1820		380	COG1820, NagA, N-acetylglucosamine-6-phosphate dea	5e-04
PRK09045		443	PRK09045, PRK09045, N-ethylammeline chlorohydrolas	6e-04
cd01299		342	cd01299, Met_dep_hydrolase_A, Metallo-dependent hy	0.001
TIGR02967		401	TIGR02967, guan_deamin, guanine deaminase	0.002

>gnl\|CDD\|238625 cd01300, YtcJ_like, YtcJ_like metal dependent amidohydrolases	Back alignment and domain information

 Score =  422 bits (1088), Expect = e-145
 Identities = 178/419 (42%), Positives = 241/419 (57%), Gaps = 12/419 (2%)

Query: 4   DTVVQIYADSKKGSWILGGGWNNDLWGGD-LPMASWIDDITPHNPVWLSRMDGHMGLANS 62
             + +  A +  G WILG GW+  L G    P  + +D ++P  PV L R DGH    NS
Sbjct: 70  ARIREDAAAAPPGEWILGFGWDESLLGEGRYPTRAELDAVSPDRPVLLLRRDGHSAWVNS 129

Query: 63  VALQLVGITNLSEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLRAS 122
            AL+L GIT  + DP GG I++ + GEPTG+L++AA  L+L  +P  + +ERR AL  A+
Sbjct: 130 AALRLAGITRDTPDPPGGEIVRDADGEPTGVLVEAAAALVLEAVPPPTPEERRAALRAAA 189

Query: 123 NLALSRGVTTVVDFGRYYPGESVQLSWEDFADVYQWASYSE-KMKIRVCLFFPLETWSSL 181
               S GVTTV D G             D     + A+  E  +++RV L+        L
Sbjct: 190 RELASLGVTTVHDAGGGAAD--------DIEAYRRLAAAGELTLRVRVALYVSPLAEDLL 241

Query: 182 ADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVMELESLLSMT 241
            +L  +      D + LGGVK FADGSLGS +A   EPY D P   GL ++  E L  + 
Sbjct: 242 EELGARKNGAGDDRLRLGGVKLFADGSLGSRTAALSEPYLDSPGTGGLLLISPEELEELV 301

Query: 242 MASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQ 301
            A+D++GLQVAIHAIGDRA D VLD  ++ +    + D R RIEHAQ ++     RF   
Sbjct: 302 RAADEAGLQVAIHAIGDRAVDTVLDALEAALKDNPRADHRHRIEHAQLVSPDDIPRFAKL 361

Query: 302 GIVASMQPQHLLDDADSA-RKKLGVDRAERESYLFQSLLANNALLALGSDWPVADINPLC 360
           G++AS+QP HL  D D+A  ++LG +RA+R SY F+SLL     +ALGSD PVA  +PL 
Sbjct: 362 GVIASVQPNHLYSDGDAAEDRRLGEERAKR-SYPFRSLLDAGVPVALGSDAPVAPPDPLL 420

Query: 361 AIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVI 419
            I  A+ R  PG      P ER+SL +AL A+T+ AA A   E++ GSL PGK+ADFV+
Sbjct: 421 GIWAAVTRKTPGGGVLGNPEERLSLEEALRAYTIGAAYAIGEEDEKGSLEPGKLADFVV 479

YtcJ is a Bacillus subtilis ORF of unknown function. The Arabidopsis homolog LAF3 has been identified as a factor required for photochrome A signalling. Length = 479

>gnl\|CDD\|224490 COG1574, COG1574, Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|219672 pfam07969, Amidohydro_3, Amidohydrolase family	Back alignment and domain information

>gnl\|CDD\|238617 cd01292, metallo-dependent_hydrolases, Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site	Back alignment and domain information

>gnl\|CDD\|238634 cd01309, Met_dep_hydrolase_C, Metallo-dependent hydrolases, subgroup C is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site	Back alignment and domain information

>gnl\|CDD\|216825 pfam01979, Amidohydro_1, Amidohydrolase family	Back alignment and domain information

>gnl\|CDD\|238621 cd01296, Imidazolone-5PH, Imidazolonepropionase/imidazolone-5-propionate hydrolase (Imidazolone-5PH) catalyzes the third step in the histidine degradation pathway, the hydrolysis of (S)-3-(5-oxo-4,5-dihydro-3H-imidazol-4-yl)propanoate to N-formimidoyl-L-glutamate	Back alignment and domain information

>gnl\|CDD\|224149 COG1228, HutI, Imidazolonepropionase and related amidohydrolases [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>gnl\|CDD\|236419 PRK09228, PRK09228, guanine deaminase; Provisional	Back alignment and domain information

>gnl\|CDD\|238434 cd00854, NagA, N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate	Back alignment and domain information

>gnl\|CDD\|236478 PRK09356, PRK09356, imidazolonepropionase; Validated	Back alignment and domain information

>gnl\|CDD\|181288 PRK08204, PRK08204, hypothetical protein; Provisional	Back alignment and domain information

>gnl\|CDD\|233321 TIGR01224, hutI, imidazolonepropionase	Back alignment and domain information

>gnl\|CDD\|238620 cd01295, AdeC, Adenine deaminase (AdeC) directly deaminates adenine to form hypoxanthine	Back alignment and domain information

>gnl\|CDD\|224733 COG1820, NagA, N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|236366 PRK09045, PRK09045, N-ethylammeline chlorohydrolase; Provisional	Back alignment and domain information

>gnl\|CDD\|238624 cd01299, Met_dep_hydrolase_A, Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site	Back alignment and domain information

>gnl\|CDD\|132012 TIGR02967, guan_deamin, guanine deaminase	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		448
COG1574		535	Predicted metal-dependent hydrolase with the TIM-b	100.0
cd01300		479	YtcJ_like YtcJ_like metal dependent amidohydrolase	100.0
PF07969		404	Amidohydro_3: Amidohydrolase family; InterPro: IPR	100.0
PRK08204		449	hypothetical protein; Provisional	99.96
PRK09229		456	N-formimino-L-glutamate deiminase; Validated	99.96
cd01298		411	ATZ_TRZ_like TRZ/ATZ family contains enzymes from	99.96
PRK09045		443	N-ethylammeline chlorohydrolase; Provisional	99.96
PRK07228		445	N-ethylammeline chlorohydrolase; Provisional	99.96
PRK06151		488	N-ethylammeline chlorohydrolase; Provisional	99.96
PRK06687		419	chlorohydrolase; Validated	99.96
PRK08203		451	hydroxydechloroatrazine ethylaminohydrolase; Revie	99.95
PRK12393		457	amidohydrolase; Provisional	99.95
cd01299		342	Met_dep_hydrolase_A Metallo-dependent hydrolases,	99.95
cd01313		418	Met_dep_hydrolase_E Metallo-dependent hydrolases,	99.95
PRK06038		430	N-ethylammeline chlorohydrolase; Provisional	99.95
PRK09228		433	guanine deaminase; Provisional	99.95
cd01303		429	GDEase Guanine deaminase (GDEase). Guanine deamina	99.95
PRK15493		435	5-methylthioadenosine/S-adenosylhomocysteine deami	99.95
PRK06380		418	metal-dependent hydrolase; Provisional	99.95
TIGR02967		401	guan_deamin guanine deaminase. This model describe	99.94
TIGR02022		455	hutF formiminoglutamate deiminase. In some species	99.94
PRK09356		406	imidazolonepropionase; Validated	99.94
PRK07203		442	putative chlorohydrolase/aminohydrolase; Validated	99.94
PLN02942		486	dihydropyrimidinase	99.94
cd01312		381	Met_dep_hydrolase_D Metallo-dependent hydrolases,	99.94
cd01318		361	DHOase_IIb Dihydroorotase (DHOase), subgroup IIb;	99.94
TIGR03314		441	Se_ssnA putative selenium metabolism protein SsnA.	99.94
PRK07627		425	dihydroorotase; Provisional	99.93
PRK08393		424	N-ethylammeline chlorohydrolase; Provisional	99.93
PRK08418		408	chlorohydrolase; Provisional	99.93
TIGR01224		377	hutI imidazolonepropionase. This enzyme catalyzes	99.93
COG0044		430	PyrC Dihydroorotase and related cyclic amidohydrol	99.93
PRK07213		375	chlorohydrolase; Provisional	99.93
PRK08044		449	allantoinase; Provisional	99.93
cd01296		371	Imidazolone-5PH Imidazolonepropionase/imidazolone-	99.93
cd01314		447	D-HYD D-hydantoinases (D-HYD) also called dihydrop	99.93
TIGR02033		454	D-hydantoinase D-hydantoinase. This model represen	99.92
PRK09357		423	pyrC dihydroorotase; Validated	99.92
PRK13404		477	dihydropyrimidinase; Provisional	99.92
PRK07572		426	cytosine deaminase; Validated	99.91
PRK06189		451	allantoinase; Provisional	99.91
TIGR03178		443	allantoinase allantoinase. This enzyme carries out	99.91
cd01293		398	Bact_CD Bacterial cytosine deaminase and related m	99.91
PRK08323		459	phenylhydantoinase; Validated	99.91
PRK09059		429	dihydroorotase; Validated	99.91
PRK08417		386	dihydroorotase; Provisional	99.91
PRK13309		572	ureC urease subunit alpha; Reviewed	99.91
PRK07583		438	cytosine deaminase-like protein; Validated	99.9
PRK09230		426	cytosine deaminase; Provisional	99.9
cd01315		447	L-HYD_ALN L-Hydantoinases (L-HYDs) and Allantoinas	99.9
cd01302		337	Cyclic_amidohydrolases Cyclic amidohydrolases, inc	99.9
TIGR00857		411	pyrC_multi dihydroorotase, multifunctional complex	99.9
PLN02795		505	allantoinase	99.89
PRK05985		391	cytosine deaminase; Provisional	99.89
TIGR02318		376	phosphono_phnM phosphonate metabolism protein PhnM	99.89
PRK14085		382	imidazolonepropionase; Provisional	99.89
COG1228		406	HutI Imidazolonepropionase and related amidohydrol	99.89
PRK02382		443	dihydroorotase; Provisional	99.89
PRK07575		438	dihydroorotase; Provisional	99.89
PRK15446		383	phosphonate metabolism protein PhnM; Provisional	99.89
PRK13206		573	ureC urease subunit alpha; Reviewed	99.89
PRK00369		392	pyrC dihydroorotase; Provisional	99.89
PRK09236		444	dihydroorotase; Reviewed	99.88
PRK01211		409	dihydroorotase; Provisional	99.88
COG0402		421	SsnA Cytosine deaminase and related metal-dependen	99.88
PRK09060		444	dihydroorotase; Validated	99.88
PRK13207		568	ureC urease subunit alpha; Reviewed	99.87
cd01297		415	D-aminoacylase D-aminoacylases (N-acyl-D-Amino aci	99.87
PRK04250		398	dihydroorotase; Provisional	99.86
PRK07369		418	dihydroorotase; Provisional	99.86
cd01309		359	Met_dep_hydrolase_C Metallo-dependent hydrolases,	99.85
KOG3968		439	consensus Atrazine chlorohydrolase/guanine deamina	99.85
cd01317		374	DHOase_IIa Dihydroorotase (DHOase), subgroup IIa;	99.84
KOG2584		522	consensus Dihydroorotase and related enzymes [Nucl	99.84
cd01306		325	PhnM PhnM is believed to be a subunit of the membr	99.82
PRK12394		379	putative metallo-dependent hydrolase; Provisional	99.82
PRK06846		410	putative deaminase; Validated	99.81
cd01295		422	AdeC Adenine deaminase (AdeC) directly deaminates	99.8
PRK13985		568	ureB urease subunit beta; Provisional	99.8
PRK06886		329	hypothetical protein; Validated	99.78
cd01316		344	CAD_DHOase The eukaryotic CAD protein is a trifunc	99.77
cd00375		567	Urease_alpha Urease alpha-subunit; Urease is a nic	99.76
TIGR01792		567	urease_alph urease, alpha subunit. This model desc	99.74
PRK09061		509	D-glutamate deacylase; Validated	99.73
cd01294		335	DHOase Dihydroorotase (DHOase) catalyzes the rever	99.73
PRK13308		569	ureC urease subunit alpha; Reviewed	99.71
cd01305		263	archeal_chlorohydrolases Predicted chlorohydrolase	99.71
TIGR01975		389	isoAsp_dipep isoaspartyl dipeptidase IadA. The L-i	99.71
PRK10657		388	isoaspartyl dipeptidase; Provisional	99.69
PRK09237		380	dihydroorotase; Provisional	99.69
PLN02303		837	urease	99.69
TIGR01178		552	ade adenine deaminase. The family described by thi	99.68
PF01979		333	Amidohydro_1: Amidohydrolase family; InterPro: IPR	99.66
COG3454		377	Metal-dependent hydrolase involved in phosphonate	99.66
cd01292		275	metallo-dependent_hydrolases Superfamily of metall	99.65
TIGR00856		341	pyrC_dimer dihydroorotase, homodimeric type. This	99.62
cd01307		338	Met_dep_hydrolase_B Metallo-dependent hydrolases,	99.57
cd01320		325	ADA Adenosine deaminase (ADA) is a monomeric zinc	99.54
PRK05451		345	dihydroorotase; Provisional	99.54
PLN02599		364	dihydroorotase	99.5
cd01308		387	Isoaspartyl-dipeptidase Isoaspartyl dipeptidase hy	99.48
TIGR01430		324	aden_deam adenosine deaminase. This family include	99.39
TIGR03121		556	one_C_dehyd_A formylmethanofuran dehydrogenase sub	99.37
cd00854		374	NagA N-acetylglucosamine-6-phosphate deacetylase,	99.37
PRK10027		588	cryptic adenine deaminase; Provisional	99.36
PRK09358		340	adenosine deaminase; Provisional	99.35
cd01304		541	FMDH_A Formylmethanofuran dehydrogenase (FMDH) sub	99.34
COG3964		386	Predicted amidohydrolase [General function predict	99.31
COG1001		584	AdeC Adenine deaminase [Nucleotide transport and m	99.29
COG0804		568	UreC Urea amidohydrolase (urease) alpha subunit [A	99.27
TIGR03583		365	EF_0837 probable amidohydrolase EF_0837/AHA_3915.	99.22
PRK11170		382	nagA N-acetylglucosamine-6-phosphate deacetylase;	99.11
TIGR00221		380	nagA N-acetylglucosamine-6-phosphate deacetylase.	99.06
PF13147		304	Amidohydro_4: Amidohydrolase; PDB: 3SFW_B 2FTW_A 2	99.04
COG1820		380	NagA N-acetylglucosamine-6-phosphate deacetylase [	98.94
cd00443		305	ADA_AMPD Adenosine/AMP deaminase. Adenosine deamin	98.76
PTZ00124		362	adenosine deaminase; Provisional	98.68
cd00530		293	PTE Phosphotriesterase (PTE) catalyzes the hydroly	98.62
cd01321		345	ADGF Adenosine deaminase-related growth factors (A	98.55
KOG3892		407	consensus N-acetyl-glucosamine-6-phosphate deacety	98.32
PF00962		331	A_deaminase: Adenosine/AMP deaminase immunodeficie	98.23
COG1816		345	Add Adenosine deaminase [Nucleotide transport and	98.14
TIGR01431		479	adm_rel adenosine deaminase-related growth factor.	98.06
cd01310		251	TatD_DNAse TatD like proteins; E.coli TatD is a cy	97.93
PRK09875		292	putative hydrolase; Provisional	97.78
TIGR00010		252	hydrolase, TatD family. Several genomes have multi	97.77
COG1229		575	FwdA Formylmethanofuran dehydrogenase subunit A [E	97.63
KOG1097		399	consensus Adenine deaminase/adenosine deaminase [N	97.48
COG0418		344	PyrC Dihydroorotase [Nucleotide transport and meta	97.36
PRK10812		265	putative DNAse; Provisional	97.31
COG3653		579	N-acyl-D-aspartate/D-glutamate deacylase [Secondar	97.27
PRK11449		258	putative deoxyribonuclease YjjV; Provisional	97.12
PF02126		308	PTE: Phosphotriesterase family; InterPro: IPR00155	96.97
PF01026		255	TatD_DNase: TatD related DNase The Pfam entry find	96.83
PRK10425		258	DNase TatD; Provisional	96.7
COG1099		254	Predicted metal-dependent hydrolases with the TIM-	96.54
COG0084		256	TatD Mg-dependent DNase [DNA replication, recombin	96.48
COG1735		316	Php Predicted metal-dependent hydrolase with the T	96.47
TIGR01429		611	AMP_deaminase AMP deaminase. This model describes	95.88
cd01319		496	AMPD AMP deaminase (AMPD) catalyzes the hydrolytic	95.61
PLN03055		602	AMP deaminase; Provisional	95.37
KOG2902		344	consensus Dihydroorotase [Nucleotide transport and	95.14
PF04909		273	Amidohydro_2: Amidohydrolase; InterPro: IPR006992	94.74
PLN02768		835	AMP deaminase	94.45
PTZ00310		1453	AMP deaminase; Provisional	94.21
cd01311		263	PDC_hydrolase 2-pyrone-4,6-dicarboxylic acid (PDC)	93.22
PRK06361		212	hypothetical protein; Provisional	93.19
PTZ00310		1453	AMP deaminase; Provisional	92.82
KOG3020		296	consensus TatD-related DNase [Replication, recombi	90.1
PRK00912		237	ribonuclease P protein component 3; Provisional	89.55
COG3618		279	Predicted metal-dependent hydrolase of the TIM-bar	86.27
COG2159		293	Predicted metal-dependent hydrolase of the TIM-bar	85.74
COG1831		285	Predicted metal-dependent hydrolase (urease superf	83.59

>COG1574 Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]	Back alignment and domain information

Probab=100.00  E-value=1.4e-80  Score=620.22  Aligned_cols=434  Identities=37%  Similarity=0.548  Sum_probs=379.5

Q ss_pred             HHHHHHHHhcCCCCeEEE--eCCCCCCCCCCCCChhhhhhhCCCCeEEEEeccCchhhhcHHHHHHcCCCCCCCCCCCCe
Q 013175            4 DTVVQIYADSKKGSWILG--GGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNLSEDPNGGT   81 (448)
Q Consensus         4 ~~~~~~~~~~~~~~wi~g--~g~~~~~~~~~~p~~~~LD~~~~~~Pv~l~~~~~H~~~~Ns~al~~~gi~~~~~~~~gg~   81 (448)
                      +.+++.++++++++|+++  +||++..|+++.||+.+||+++|++||+|.+.|+|.+|+||+||+++||++.+|+|+||.
T Consensus        95 ~~i~~~a~~~~~~~w~~~vG~g~~~~~~~~~~~t~~~lD~~~~~~Pv~l~r~~~H~a~~Ns~aL~~~Gi~~~t~~p~gg~  174 (535)
T COG1574          95 AALRRQAARTPPGQWVVVVGWGWDEQFWEERLPTLAELDAAAPDHPVLLIRLDGHVAVANSAALRLAGITRDTPDPPGGI  174 (535)
T ss_pred             HHHHHHHHhCCCCCceEEEEcChhhhccccCCCcHHHhhccCCCCCEEEEeccChHHHHhHHHHHHcCCCCCCCCCCCCc
Confidence            344455666777776655  556667777779999999999999999999999999999999999999999999999998


Q ss_pred             EeeCCCCCCCchhHHHHHHHhhhcCCCCCHHHHHHHHHH-HHHHHHhcCcceeEeCccCCCCCccccchHHHHHHHHHHH
Q 013175           82 IMKTSSGEPTGLLIDAAMKLILPWIPEVSVDERREALLR-ASNLALSRGVTTVVDFGRYYPGESVQLSWEDFADVYQWAS  160 (448)
Q Consensus        82 i~~d~~G~~tG~l~e~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~  160 (448)
                      |.||++|+|||+|.|.++.++....|..++++..+.... +.+++++.|||+|+||.. +      ........+++.+.
T Consensus       175 ~~~d~~g~ptG~L~e~a~~~~~~~~~~~~~~~~~~~~~~~a~~~l~s~GiT~v~d~~~-~------~~~~~~~~~~r~~~  247 (535)
T COG1574         175 IGRDADGEPTGLLLENAQALVARLAPPPSPAEELEAAAARAARELNSLGITGVHDMAG-Y------QGYYADYEAYRALA  247 (535)
T ss_pred             ccccCCCCCCeeehHhhHHHHHHhcCCCCchHHHHHHHHHHHHHHHhcCCeEEEcccc-c------ccchhHHHHHHHHH
Confidence            889999999999999998999988887776665555544 899999999999999974 1      11234567888899


Q ss_pred             hcCCCeeEEEEccCCcchhh-HHHHHHhcCCcCCCCeeeCceEEEecCCcCCCCccccCCcCCCCCCCcccCCCHHHHHH
Q 013175          161 YSEKMKIRVCLFFPLETWSS-LADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVMELESLLS  239 (448)
Q Consensus       161 ~~~~l~irv~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~K~f~DG~~~~~ta~~~~py~~~~~~~g~~~~~~~~l~~  239 (448)
                      ..+++++|+...+....... ..+..  .......+++.+++|+|.||+++++||++.+||.+.++..|.+.+++++|.+
T Consensus       248 ~~~~l~~rv~~~l~~~~~~~~~~~~~--~~~~~~~~~~~g~~K~f~Dgslg~rtA~l~~~y~d~~~~~G~~l~~~e~l~~  325 (535)
T COG1574         248 AGGELPVRVALLLFTEDLKEERLDLL--RQTGAKGLLQGGGVKLFADGSLGERTALLAAPYADGPGPSGELLLTEEELEE  325 (535)
T ss_pred             hcCcceEEEEeeccccchhhHHHhhc--ccCCccceeecCceEEEEeCCCCcchhhccCcccCCCCCCCCcccCHHHHHH
Confidence            99999999988764433222 11111  1222356788899999999999999999999999998888999999999999


Q ss_pred             HHHHHHHCCCcEEEEecchHHHHHHHHHHHHhHHhcCCCCCCCeEEecccCChhhHHHHHhCCcEEeeccccccCchhHH
Q 013175          240 MTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQHLLDDADSA  319 (448)
Q Consensus       240 ~~~~a~~~g~~v~iHa~gd~a~~~~l~a~~~~~~~~~~~~~r~~i~H~~~~~~~~i~~~~~~gv~~~~~P~~~~~~~~~~  319 (448)
                      +++.+.++|+++++||+||++++.+|++||++....+..+.||+|+|++++++++++|++++|+.+++||.|+..+..++
T Consensus       326 ~v~~a~~~gl~v~vHAiGD~Av~~~LdafE~~~~~~~~~~~r~rieH~~~v~~~~i~R~~~Lgv~~svQP~f~~~~~~~~  405 (535)
T COG1574         326 LVRAADERGLPVAVHAIGDGAVDAALDAFEKARKKNGLKGLRHRIEHAELVSPDQIERFAKLGVIASVQPNFLFSDGEWY  405 (535)
T ss_pred             HHHHHHHCCCcEEEEEechHHHHHHHHHHHHHhhhcCCccCCceeeeeeecCHhHHHHHHhcCceEeeccccccccchHH
Confidence            99999999999999999999999999999999998888889999999999999999999999999999999998777888


Q ss_pred             HHhcCHhhhhhhhhhHHHHHHcCCceeecCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCCCCCCCHHHHHHHHhHHHHHH
Q 013175          320 RKKLGVDRAERESYLFQSLLANNALLALGSDWPVADINPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARA  399 (448)
Q Consensus       320 ~~~~g~~r~~~~~~~~~~~~~~Gv~v~~gSD~p~~~~~p~~~~~~a~~r~~~~~~~~~~~~~~ls~~~al~~~T~n~A~~  399 (448)
                      .+++|.+|. +..+|+++|+++|+++++|||+|++++|||.+++.+|+|+...+. ...++++||++|||++||.|+|++
T Consensus       406 ~~rlG~~r~-~~~~p~~~ll~~G~~la~gSD~Pv~~~dP~~~i~~AVtr~~~~g~-~~~~~~~L~~~eAL~~yT~~~A~a  483 (535)
T COG1574         406 VDRLGEERA-SRSYPFRSLLKAGVPLAGGSDAPVEPYDPWLGIYAAVTRKTPGGR-VLGPEERLTREEALRAYTEGGAYA  483 (535)
T ss_pred             HHhhhhhhh-hccCcHHHHHHCCCeEeccCCCCCCCCChHHHHHHHHcCCCCCCC-CCccccccCHHHHHHHHhhhhHHh
Confidence            899999999 889999999999999999999999999999999999999876432 122344899999999999999999


Q ss_pred             cccCCCcccccCCCcccEEEecCCCCC-ChhhhccCeeeEEEECCEEecC
Q 013175          400 CFLENDVGSLSPGKIADFVILSTSSWE-DFAAEVSASIEATYVSGVQAYP  448 (448)
Q Consensus       400 ~g~~~~~Gsi~~Gk~ADlvvld~d~~~-~~~~~~~~~v~~t~~~G~~V~~  448 (448)
                      .|.++++|+|++||.|||+|+|.|++. +++.+...+|..|+++|++||+
T Consensus       484 ~~~e~~~G~Le~G~~AD~~Vld~d~f~~~~~~i~~~~v~~T~~~Gk~VY~  533 (535)
T COG1574         484 SGAEGEKGSLEPGKLADFAVLDRDPFTVDPDSIKDTKVVLTIVAGKVVYR  533 (535)
T ss_pred             hhccccccccccCceeeEEEecCCcccCChHHhccceEEEEEEcCeEeec
Confidence            999999999999999999999999999 8888889999999999999995

>cd01300 YtcJ_like YtcJ_like metal dependent amidohydrolases	Back alignment and domain information

>PF07969 Amidohydro_3: Amidohydrolase family; InterPro: IPR013108 Amidohydrolases are a diverse superfamily of enzymes which catalyse the hydrolysis of amide or amine bonds in a large number of different substrates including urea, cytosine, AMP, formylmethanofuran, etc [, ]	Back alignment and domain information

>PRK08204 hypothetical protein; Provisional	Back alignment and domain information

>PRK09229 N-formimino-L-glutamate deiminase; Validated	Back alignment and domain information

>cd01298 ATZ_TRZ_like TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases	Back alignment and domain information

>PRK09045 N-ethylammeline chlorohydrolase; Provisional	Back alignment and domain information

>PRK07228 N-ethylammeline chlorohydrolase; Provisional	Back alignment and domain information

>PRK06151 N-ethylammeline chlorohydrolase; Provisional	Back alignment and domain information

>PRK06687 chlorohydrolase; Validated	Back alignment and domain information

>PRK08203 hydroxydechloroatrazine ethylaminohydrolase; Reviewed	Back alignment and domain information

>PRK12393 amidohydrolase; Provisional	Back alignment and domain information

>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site	Back alignment and domain information

>cd01313 Met_dep_hydrolase_E Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site	Back alignment and domain information

>PRK06038 N-ethylammeline chlorohydrolase; Provisional	Back alignment and domain information

>PRK09228 guanine deaminase; Provisional	Back alignment and domain information

>cd01303 GDEase Guanine deaminase (GDEase)	Back alignment and domain information

>PRK15493 5-methylthioadenosine/S-adenosylhomocysteine deaminase; Provisional	Back alignment and domain information

>PRK06380 metal-dependent hydrolase; Provisional	Back alignment and domain information

>TIGR02967 guan_deamin guanine deaminase	Back alignment and domain information

>TIGR02022 hutF formiminoglutamate deiminase	Back alignment and domain information

>PRK09356 imidazolonepropionase; Validated	Back alignment and domain information

>PRK07203 putative chlorohydrolase/aminohydrolase; Validated	Back alignment and domain information

>PLN02942 dihydropyrimidinase	Back alignment and domain information

>cd01312 Met_dep_hydrolase_D Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site	Back alignment and domain information

>cd01318 DHOase_IIb Dihydroorotase (DHOase), subgroup IIb; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis	Back alignment and domain information

>TIGR03314 Se_ssnA putative selenium metabolism protein SsnA	Back alignment and domain information

>PRK07627 dihydroorotase; Provisional	Back alignment and domain information

>PRK08393 N-ethylammeline chlorohydrolase; Provisional	Back alignment and domain information

>PRK08418 chlorohydrolase; Provisional	Back alignment and domain information

>TIGR01224 hutI imidazolonepropionase	Back alignment and domain information

>COG0044 PyrC Dihydroorotase and related cyclic amidohydrolases [Nucleotide transport and metabolism]	Back alignment and domain information

>PRK07213 chlorohydrolase; Provisional	Back alignment and domain information

>PRK08044 allantoinase; Provisional	Back alignment and domain information

>cd01296 Imidazolone-5PH Imidazolonepropionase/imidazolone-5-propionate hydrolase (Imidazolone-5PH) catalyzes the third step in the histidine degradation pathway, the hydrolysis of (S)-3-(5-oxo-4,5-dihydro-3H-imidazol-4-yl)propanoate to N-formimidoyl-L-glutamate	Back alignment and domain information

>cd01314 D-HYD D-hydantoinases (D-HYD) also called dihydropyrimidases (DHPase) and related proteins; DHPases are a family of enzymes that catalyze the reversible hydrolytic ring opening of the amide bond in five- or six-membered cyclic diamides, like dihydropyrimidine or hydantoin	Back alignment and domain information

>TIGR02033 D-hydantoinase D-hydantoinase	Back alignment and domain information

>PRK09357 pyrC dihydroorotase; Validated	Back alignment and domain information

>PRK13404 dihydropyrimidinase; Provisional	Back alignment and domain information

>PRK07572 cytosine deaminase; Validated	Back alignment and domain information

>PRK06189 allantoinase; Provisional	Back alignment and domain information

>TIGR03178 allantoinase allantoinase	Back alignment and domain information

>cd01293 Bact_CD Bacterial cytosine deaminase and related metal-dependent hydrolases	Back alignment and domain information

>PRK08323 phenylhydantoinase; Validated	Back alignment and domain information

>PRK09059 dihydroorotase; Validated	Back alignment and domain information

>PRK08417 dihydroorotase; Provisional	Back alignment and domain information

>PRK13309 ureC urease subunit alpha; Reviewed	Back alignment and domain information

>PRK07583 cytosine deaminase-like protein; Validated	Back alignment and domain information

>PRK09230 cytosine deaminase; Provisional	Back alignment and domain information

>cd01315 L-HYD_ALN L-Hydantoinases (L-HYDs) and Allantoinase (ALN); L-Hydantoinases are a member of the dihydropyrimidinase family, which catalyzes the reversible hydrolytic ring opening of dihydropyrimidines and hydantoins (five-membered cyclic diamides used in biotechnology)	Back alignment and domain information

>cd01302 Cyclic_amidohydrolases Cyclic amidohydrolases, including hydantoinase, dihydropyrimidinase, allantoinase, and dihydroorotase, are involved in the metabolism of pyrimidines and purines, sharing the property of hydrolyzing the cyclic amide bond of each substrate to the corresponding N-carbamyl amino acids	Back alignment and domain information

>TIGR00857 pyrC_multi dihydroorotase, multifunctional complex type	Back alignment and domain information

>PLN02795 allantoinase	Back alignment and domain information

>PRK05985 cytosine deaminase; Provisional	Back alignment and domain information

>TIGR02318 phosphono_phnM phosphonate metabolism protein PhnM	Back alignment and domain information

>PRK14085 imidazolonepropionase; Provisional	Back alignment and domain information

>COG1228 HutI Imidazolonepropionase and related amidohydrolases [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>PRK02382 dihydroorotase; Provisional	Back alignment and domain information

>PRK07575 dihydroorotase; Provisional	Back alignment and domain information

>PRK15446 phosphonate metabolism protein PhnM; Provisional	Back alignment and domain information

>PRK13206 ureC urease subunit alpha; Reviewed	Back alignment and domain information

>PRK00369 pyrC dihydroorotase; Provisional	Back alignment and domain information

>PRK09236 dihydroorotase; Reviewed	Back alignment and domain information

>PRK01211 dihydroorotase; Provisional	Back alignment and domain information

>COG0402 SsnA Cytosine deaminase and related metal-dependent hydrolases [Nucleotide transport and metabolism / General function prediction only]	Back alignment and domain information

>PRK09060 dihydroorotase; Validated	Back alignment and domain information

>PRK13207 ureC urease subunit alpha; Reviewed	Back alignment and domain information

>cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics	Back alignment and domain information

>PRK04250 dihydroorotase; Provisional	Back alignment and domain information

>PRK07369 dihydroorotase; Provisional	Back alignment and domain information

>cd01309 Met_dep_hydrolase_C Metallo-dependent hydrolases, subgroup C is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site	Back alignment and domain information

>KOG3968 consensus Atrazine chlorohydrolase/guanine deaminase [Nucleotide transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]	Back alignment and domain information

>cd01317 DHOase_IIa Dihydroorotase (DHOase), subgroup IIa; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis	Back alignment and domain information

>KOG2584 consensus Dihydroorotase and related enzymes [Nucleotide transport and metabolism]	Back alignment and domain information

>cd01306 PhnM PhnM is believed to be a subunit of the membrane associated C-P lyase complex	Back alignment and domain information

>PRK12394 putative metallo-dependent hydrolase; Provisional	Back alignment and domain information

>PRK06846 putative deaminase; Validated	Back alignment and domain information

>cd01295 AdeC Adenine deaminase (AdeC) directly deaminates adenine to form hypoxanthine	Back alignment and domain information

>PRK13985 ureB urease subunit beta; Provisional	Back alignment and domain information

>PRK06886 hypothetical protein; Validated	Back alignment and domain information

>cd01316 CAD_DHOase The eukaryotic CAD protein is a trifunctional enzyme of carbamoylphosphate synthetase-aspartate transcarbamoylase-dihydroorotase, which catalyzes the first three steps of de novo pyrimidine nucleotide biosynthesis	Back alignment and domain information

>cd00375 Urease_alpha Urease alpha-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide	Back alignment and domain information

>TIGR01792 urease_alph urease, alpha subunit	Back alignment and domain information

>PRK09061 D-glutamate deacylase; Validated	Back alignment and domain information

>cd01294 DHOase Dihydroorotase (DHOase) catalyzes the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in the pyrimidine biosynthesis	Back alignment and domain information

>PRK13308 ureC urease subunit alpha; Reviewed	Back alignment and domain information

>cd01305 archeal_chlorohydrolases Predicted chlorohydrolases	Back alignment and domain information

>TIGR01975 isoAsp_dipep isoaspartyl dipeptidase IadA	Back alignment and domain information

>PRK10657 isoaspartyl dipeptidase; Provisional	Back alignment and domain information

>PRK09237 dihydroorotase; Provisional	Back alignment and domain information

>PLN02303 urease	Back alignment and domain information

>TIGR01178 ade adenine deaminase	Back alignment and domain information

>PF01979 Amidohydro_1: Amidohydrolase family; InterPro: IPR006680 This group of enzymes represents a large metal dependent hydrolase superfamily []	Back alignment and domain information

>COG3454 Metal-dependent hydrolase involved in phosphonate metabolism [Inorganic ion transport and metabolism]	Back alignment and domain information

>cd01292 metallo-dependent_hydrolases Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site	Back alignment and domain information

>TIGR00856 pyrC_dimer dihydroorotase, homodimeric type	Back alignment and domain information

>cd01307 Met_dep_hydrolase_B Metallo-dependent hydrolases, subgroup B is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site	Back alignment and domain information

>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively	Back alignment and domain information

>PRK05451 dihydroorotase; Provisional	Back alignment and domain information

>PLN02599 dihydroorotase	Back alignment and domain information

>cd01308 Isoaspartyl-dipeptidase Isoaspartyl dipeptidase hydrolyzes the beta-L-isoaspartyl linkages in dipeptides, as part of the degradative pathway to eliminate proteins with beta-L-isoaspartyl peptide bonds, bonds whereby the beta-group of an aspartate forms the peptide link with the amino group of the following amino acid	Back alignment and domain information

>TIGR01430 aden_deam adenosine deaminase	Back alignment and domain information

>TIGR03121 one_C_dehyd_A formylmethanofuran dehydrogenase subunit A	Back alignment and domain information

>cd00854 NagA N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate	Back alignment and domain information

>PRK10027 cryptic adenine deaminase; Provisional	Back alignment and domain information

>PRK09358 adenosine deaminase; Provisional	Back alignment and domain information

>cd01304 FMDH_A Formylmethanofuran dehydrogenase (FMDH) subunit A; Methanogenic bacteria and archea derive the energy for autotrophic growth from methanogenesis, the reduction of CO2 with molecular hydrogen as the electron donor	Back alignment and domain information

>COG3964 Predicted amidohydrolase [General function prediction only]	Back alignment and domain information

>COG1001 AdeC Adenine deaminase [Nucleotide transport and metabolism]	Back alignment and domain information

>COG0804 UreC Urea amidohydrolase (urease) alpha subunit [Amino acid transport and metabolism]	Back alignment and domain information

>TIGR03583 EF_0837 probable amidohydrolase EF_0837/AHA_3915	Back alignment and domain information

>PRK11170 nagA N-acetylglucosamine-6-phosphate deacetylase; Provisional	Back alignment and domain information

>TIGR00221 nagA N-acetylglucosamine-6-phosphate deacetylase	Back alignment and domain information

>PF13147 Amidohydro_4: Amidohydrolase; PDB: 3SFW_B 2FTW_A 2PUZ_B 2GOK_B 3HM7_E 3D6N_A 1XRT_A 1XRF_A 1YNY_B 1K1D_F	Back alignment and domain information

>COG1820 NagA N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism]	Back alignment and domain information

>cd00443 ADA_AMPD Adenosine/AMP deaminase	Back alignment and domain information

>PTZ00124 adenosine deaminase; Provisional	Back alignment and domain information

>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon	Back alignment and domain information

>cd01321 ADGF Adenosine deaminase-related growth factors (ADGF), a novel family of secreted growth-factors with sequence similarty to adenosine deaminase	Back alignment and domain information

>KOG3892 consensus N-acetyl-glucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism]	Back alignment and domain information

>PF00962 A_deaminase: Adenosine/AMP deaminase immunodeficiency disease (SCID); InterPro: IPR001365 Adenosine deaminase (3	Back alignment and domain information

>COG1816 Add Adenosine deaminase [Nucleotide transport and metabolism]	Back alignment and domain information

>TIGR01431 adm_rel adenosine deaminase-related growth factor	Back alignment and domain information

>cd01310 TatD_DNAse TatD like proteins; E	Back alignment and domain information

>PRK09875 putative hydrolase; Provisional	Back alignment and domain information

>TIGR00010 hydrolase, TatD family	Back alignment and domain information

>COG1229 FwdA Formylmethanofuran dehydrogenase subunit A [Energy production and conversion]	Back alignment and domain information

>KOG1097 consensus Adenine deaminase/adenosine deaminase [Nucleotide transport and metabolism]	Back alignment and domain information

>COG0418 PyrC Dihydroorotase [Nucleotide transport and metabolism]	Back alignment and domain information

>PRK10812 putative DNAse; Provisional	Back alignment and domain information

>COG3653 N-acyl-D-aspartate/D-glutamate deacylase [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>PRK11449 putative deoxyribonuclease YjjV; Provisional	Back alignment and domain information

>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3	Back alignment and domain information

>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition	Back alignment and domain information

>PRK10425 DNase TatD; Provisional	Back alignment and domain information

>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]	Back alignment and domain information

>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]	Back alignment and domain information

>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]	Back alignment and domain information

>TIGR01429 AMP_deaminase AMP deaminase	Back alignment and domain information

>cd01319 AMPD AMP deaminase (AMPD) catalyzes the hydrolytic deamination of adensosine monophosphate (AMP) at position 6 of the adenine nucleotide ring	Back alignment and domain information

>PLN03055 AMP deaminase; Provisional	Back alignment and domain information

>KOG2902 consensus Dihydroorotase [Nucleotide transport and metabolism]	Back alignment and domain information

>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []	Back alignment and domain information

>PLN02768 AMP deaminase	Back alignment and domain information

>PTZ00310 AMP deaminase; Provisional	Back alignment and domain information

>cd01311 PDC_hydrolase 2-pyrone-4,6-dicarboxylic acid (PDC) hydrolase hydrolyzes PDC to yield 4-oxalomesaconic acid (OMA) or its tautomer, 4-carboxy-2-hydroxymuconic acid (CHM)	Back alignment and domain information

>PRK06361 hypothetical protein; Provisional	Back alignment and domain information

>PTZ00310 AMP deaminase; Provisional	Back alignment and domain information

>KOG3020 consensus TatD-related DNase [Replication, recombination and repair]	Back alignment and domain information

>PRK00912 ribonuclease P protein component 3; Provisional	Back alignment and domain information

>COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	Back alignment and domain information

>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	Back alignment and domain information

>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		448
3igh_X		486	Crystal Structure Of An Uncharacterized Metal-Depen		1e-21
3icj_A		534	Crystal Structure Of An Uncharacterized Metal-Depen		9e-18

>pdb|3IGH|X Chain X, Crystal Structure Of An Uncharacterized Metal-Dependent Hydrolase From Pyrococcus Horikoshii Ot3 Length = 486

Back alignment and structure

Iteration: 1

Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 103/380 (27%), Positives = 170/380 (44%), Gaps = 41/380 (10%) Query: 46 NPVWLSRMDGHMGLANSVALQLVGITNLSE-DPNGGTIMKTSSGEPTGLLIDAAMKLILP 104 PV++ R H+ +AN L+L+ +T + D + G I + S ++ A K+I Sbjct: 127 KPVFIYRKCFHVAVANDKMLELLNLTPSKDFDEDTGIIKEKS--------LEEARKVINE 178 Query: 105 WIPEVSVDXXXXXXXXXXXXXXXXGVTTVVDFGRYYPGESVQLSWEDFADVYQWASYSEK 164 + ++V+ GV +V S E + K Sbjct: 179 RV--LTVEDYVYYIKRAQEHLLDLGVKSV----------SFMSVNEKALRALFYLEREGK 226 Query: 165 MKIRVCLFFPLETWSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEP 224 + I V + E L + G + + + GVK F DGSLG+ +AL +PY+D+P Sbjct: 227 LSINVFAYVTPEVLDKLESI--GLGRFQGNRLTIAGVKLFTDGSLGARTALLSKPYSDDP 284 Query: 225 HNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRF-- 282 G VME E L+ +T + GL VAIHAIGD+A D+ LD+++ TTG F Sbjct: 285 STSGQLVMEREELIRITEKARSLGLDVAIHAIGDKALDVALDVFE----TTG-----FPG 335 Query: 283 RIEHAQHLASGTAARFGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSXXXXX 342 RIEHA + R + + S+QP ++ D +++G +R + Y F+ Sbjct: 336 RIEHASLVRDDQLERVKNLKVRLSVQPHFIISDW-WIVERVGEERV-KWVYRFKD-LMKV 392 Query: 343 XXXXXGSDWPVADINPLCAIRTAMKRIPPGWDNAW--IPSERISLTDALIAHTLSAARAC 400 +D P+ +P + A+ R G + + + + DAL ++T +AR Sbjct: 393 AELGFSTDSPIEPADPWLTVDAAVNR-GKGKVKLYELTKDQALDIKDALHSYTYGSARVS 451 Query: 401 FLENDVGSLSPGKIADFVIL 420 L +D+G L PG A+++IL Sbjct: 452 -LASDIGKLEPGFKAEYIIL 470

PyMOL of 3igh

>pdb|3ICJ|A Chain A, Crystal Structure Of An Uncharacterized Metal-Dependent Hydrolase From Pyrococcus Furiosus Length = 534

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		448
3icj_A		534	Uncharacterized metal-dependent hydrolase; structu	1e-136
2puz_A		419	Imidazolonepropionase; NYSGXRC, PSI-2, N-formimino	5e-13
2bb0_A		421	Imidazolonepropionase; TIM barrel, hydrolase; 2.00	2e-12
2q09_A		416	Imidazolonepropionase; 9252H, NYSGXRC, 3-(2, 5-dio	1e-11
2r8c_A		426	Putative amidohydrolase; unknown source, sargasso	2e-08
3ooq_A		396	Amidohydrolase; structural genomics, protein struc	7e-08
3feq_A		423	Putative amidohydrolase; unknown source, sargasso	1e-07
3gnh_A		403	L-lysine, L-arginine carboxypeptidase CC2672; N-me	1e-07
2qs8_A		418	XAA-Pro dipeptidase; amidohydrolase, TIM barrel, p	3e-07
2i9u_A		439	Cytosine/guanine deaminase related protein; protei	3e-07
2vhl_A		396	N-acetylglucosamine-6-phosphate deacetylase; N- ac	4e-07
2ood_A		475	BLR3880 protein; PSI-II, PSI-2, guanine deaminase,	5e-07
1yrr_A		382	N-acetylglucosamine-6-phosphate deacetylase; (beta	5e-07
4aql_A		476	Guanine deaminase; hydrolase, purine metabolism; H	5e-07
2p9b_A		458	Possible prolidase; protein structure initiative I	9e-07
2qt3_A		403	N-isopropylammelide isopropyl amidohydrolase; N-is	9e-07
1ra0_A		430	Cytosine deaminase; alpha-beta barrel, hexamer, co	2e-06
1o12_A		376	N-acetylglucosamine-6-phosphate deacetylase; struc	2e-06
3iv8_A		381	N-acetylglucosamine-6-phosphate deacetylase; IDP01	3e-06
3be7_A		408	Zn-dependent arginine carboxypeptidase; unknown so	8e-06
2vun_A		386	Enamidase; nicotinate degradation, binuclear metal	9e-05
4f0l_A		458	Amidohydrolase; ssgcid, structural genomics, seatt	9e-05
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
2ics_A		379	Adenine deaminase; TIM barrel, binuclear zinc, ade	4e-04
3lnp_A		468	Amidohydrolase family protein OLEI01672_1_465; TIM	5e-04

>3icj_A Uncharacterized metal-dependent hydrolase; structural genomics, amidohydrolase, PSI-2, protein structur initiative; HET: KCX; 1.95A {Pyrococcus furiosus} PDB: 3etk_A* 3igh_X* Length = 534	Back alignment and structure

 Score =  400 bits (1029), Expect = e-136
 Identities = 107/437 (24%), Positives = 181/437 (41%), Gaps = 48/437 (10%)

Query: 14  KKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNL 73
            +G  I G GW+ D  G   P    +D      PV+L R   H+ + NS  + L+ +   
Sbjct: 132 GRGRIIFGFGWDQDELGR-WPTREDLDV--IDRPVFLYRRCFHVAVMNSKMIDLLNLKPS 188

Query: 74  SEDPNGGTIMKTSSGEPTGLLIDAAMKLILPWIPE--VSVDERREALLRASNLALSRGVT 131
            +             E TG++ + A++     I E  ++V + +  +  A    LS GV 
Sbjct: 189 KDFD-----------ESTGIVRERALEESRKIINEKILTVKDYKHYIESAQEHLLSLGVH 237

Query: 132 TVVDFGRYYPGESVQLSWEDFADVYQWASYSEKMKIRVCLFFPLETWSSLADLINKTGHV 191
           +V             +  +             ++K+ V  +   E    L +L    G  
Sbjct: 238 SVGFMS---------VGEKAL-KALFELEREGRLKMNVFAYLSPELLDKLEEL--NLGKF 285

Query: 192 LSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQV 251
               + + GVK F DGSLG+ +AL  EPY D P   G  VM  + ++ +   +   GL V
Sbjct: 286 EGRRLRIWGVKLFVDGSLGARTALLSEPYTDNPTTSGELVMNKDEIVEVIERAKPLGLDV 345

Query: 252 AIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQH 311
           A+HAIGD+A D+ LD ++         +   RIEHA  +      R  +  +  S QP  
Sbjct: 346 AVHAIGDKAVDVALDAFEEA-------EFSGRIEHASLVRDDQLERIKELKVRISAQPHF 398

Query: 312 LLDDADSARKKLGVDRAERESYLFQSLLANNALLALGSDWPVADINPLCAIRTAMKRIPP 371
           ++ D      ++G +RA+  +Y  ++ L++   L   +D P+   +P  +I  A+ R   
Sbjct: 399 IVSDWW-IVNRVGEERAKW-AYRLKT-LSSITKLGFSTDSPIEPADPWVSIDAAVNRYVV 455

Query: 372 GWDNAWIPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAE 431
                  P ER+S  +AL  +T  +A+    E D+G L  G  A+++IL     ++    
Sbjct: 456 D------PGERVSREEALHLYTHGSAQVTLAE-DLGKLERGFRAEYIILDRDPLKEMKG- 507

Query: 432 VSASIEATYVSGVQAYP 448
                  T  +      
Sbjct: 508 --IITITTDPNSSSVDK 522

PyMOL of 3icj

>2puz_A Imidazolonepropionase; NYSGXRC, PSI-2, N-formimino-L- glutamate, product-bound, structural genomics, protein STRU initiative; HET: NIG; 1.83A {Agrobacterium tumefaciens str} SCOP: b.92.1.10 c.1.9.17 PDB: 2gok_A Length = 419	Back alignment and structure

>2bb0_A Imidazolonepropionase; TIM barrel, hydrolase; 2.00A {Bacillus subtilis} SCOP: b.92.1.10 c.1.9.17 PDB: 2g3f_A Length = 421	Back alignment and structure

>2q09_A Imidazolonepropionase; 9252H, NYSGXRC, 3-(2, 5-dioxo-imidazo 4YL)-propionic acid, PSI-2 community, structural genomics, structure initiative; HET: DI6; 1.97A {Unidentified} SCOP: b.92.1.10 c.1.9.17 PDB: 2oof_A* Length = 416	Back alignment and structure

>2r8c_A Putative amidohydrolase; unknown source, sargasso SEA, structural genomics, protein structure initiative, PSI; 2.31A {Unidentified} SCOP: b.92.1.9 c.1.9.18 PDB: 3mkv_A* Length = 426	Back alignment and structure

>3ooq_A Amidohydrolase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, H PSI-2; 2.06A {Thermotoga maritima} Length = 396	Back alignment and structure

>3feq_A Putative amidohydrolase; unknown source, sargasso SEA, structural genomics, protein structure initiative, PSI; 2.63A {Unidentified} PDB: 3lwy_A* 3n2c_A* Length = 423	Back alignment and structure

>2qs8_A XAA-Pro dipeptidase; amidohydrolase, TIM barrel, protein structure initiative, PSI-2, NYSGXRC, structural genomics; 2.33A {Alteromonas macleodii} SCOP: b.92.1.9 c.1.9.18 Length = 418	Back alignment and structure

>2i9u_A Cytosine/guanine deaminase related protein; protein structure initiative II (PSI-II), amidohydrol guanine deaminase; HET: GUN; 2.05A {Clostridium acetobutylicum} SCOP: b.92.1.4 c.1.9.9 Length = 439	Back alignment and structure

>2vhl_A N-acetylglucosamine-6-phosphate deacetylase; N- acetyleglucosamine-6-phosphate, carbohydrate metabolism, hydrolase; HET: GLP PGE; 2.05A {Bacillus subtilis} Length = 396	Back alignment and structure

>2ood_A BLR3880 protein; PSI-II, PSI-2, guanine deaminase, guanine, structural genomics, protein structure initiative; HET: GUN; 2.62A {Bradyrhizobium japonicum} SCOP: b.92.1.4 c.1.9.9 Length = 475	Back alignment and structure

>1yrr_A N-acetylglucosamine-6-phosphate deacetylase; (beta/alpha)8 barrel, beta sandwich, hydrolase; 2.00A {Escherichia coli} SCOP: b.92.1.5 c.1.9.10 PDB: 1ymy_A 2p50_A 2p53_A* Length = 382	Back alignment and structure

>4aql_A Guanine deaminase; hydrolase, purine metabolism; HET: TXC; 1.99A {Homo sapiens} PDB: 2uz9_A* 3e0l_A Length = 476	Back alignment and structure

>2p9b_A Possible prolidase; protein structure initiative II, PSI-2, amidohydrolase, structural genomics; 1.70A {Bifidobacterium longum NCC2705} SCOP: b.92.1.10 c.1.9.17 Length = 458	Back alignment and structure

>2qt3_A N-isopropylammelide isopropyl amidohydrolase; N-isopropylammelide isopropylaminohydrolase ATZC, structural genomics, NYSGXRC, target 9364B; 2.24A {Pseudomonas SP} Length = 403	Back alignment and structure

>1ra0_A Cytosine deaminase; alpha-beta barrel, hexamer, conformation change, D314G mutant, hydrolase; 1.12A {Escherichia coli} SCOP: b.92.1.2 c.1.9.5 PDB: 1r9x_A 1ra5_A 1r9y_A 1r9z_A 1rak_A 3r0d_A* 3o7u_A* 3rn6_A* 1k6w_A 1k70_A 3g77_A Length = 430	Back alignment and structure

>1o12_A N-acetylglucosamine-6-phosphate deacetylase; structural genomics, TM0814, JCSG, PSI, protein structure initiative; 2.50A {Thermotoga maritima} SCOP: b.92.1.5 c.1.9.10 Length = 376	Back alignment and structure

>3iv8_A N-acetylglucosamine-6-phosphate deacetylase; IDP01334, fruct phosphate, carbohydrate metabolism, hydrolase; HET: F6P; 2.53A {Vibrio cholerae} PDB: 3egj_A* Length = 381	Back alignment and structure

>3be7_A Zn-dependent arginine carboxypeptidase; unknown source, amidohydrolase, sargasso SEA, structural GEN protein structure initiative, PSI; HET: ARG; 2.30A {Unidentified} SCOP: b.92.1.9 c.1.9.18 PDB: 3dug_A* Length = 408	Back alignment and structure

>2vun_A Enamidase; nicotinate degradation, binuclear metal center, amidohydrolases, stereospecificity, hydrolase; 1.89A {Eubacterium barkeri} Length = 386	Back alignment and structure

>4f0l_A Amidohydrolase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Brucella melitensis biovar abortus} Length = 458	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2ics_A Adenine deaminase; TIM barrel, binuclear zinc, adenine complex, amidohydrolase, structural genomics, PSI, protein structure initiative; HET: KCX ADE; 2.30A {Enterococcus faecalis} SCOP: b.92.1.8 c.1.9.14 Length = 379	Back alignment and structure

>3lnp_A Amidohydrolase family protein OLEI01672_1_465; TIM barrel, beta-fold, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Oleispira antarctica} Length = 468	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		448
3icj_A		534	Uncharacterized metal-dependent hydrolase; structu	100.0
3gnh_A		403	L-lysine, L-arginine carboxypeptidase CC2672; N-me	99.97
3ls9_A		456	Triazine hydrolase; atrazine chlorohydrolase TRZN;	99.97
2r8c_A		426	Putative amidohydrolase; unknown source, sargasso	99.97
3feq_A		423	Putative amidohydrolase; unknown source, sargasso	99.97
2qs8_A		418	XAA-Pro dipeptidase; amidohydrolase, TIM barrel, p	99.96
2paj_A		492	Putative cytosine/guanine deaminase; NYSGXRC, PSI-	99.96
3h4u_A		479	Amidohydrolase; signature of Zn ligands, structura	99.96
4f0r_A		447	5-methylthioadenosine/S-adenosylhomocysteine DEAM;	99.96
2ood_A		475	BLR3880 protein; PSI-II, PSI-2, guanine deaminase,	99.96
4dyk_A		451	Amidohydrolase; adenosine deaminase, nysgrc, struc	99.96
4dzh_A		472	Amidohydrolase; adenosine deaminase, nysgrc, struc	99.96
3lnp_A		468	Amidohydrolase family protein OLEI01672_1_465; TIM	99.96
2p9b_A		458	Possible prolidase; protein structure initiative I	99.95
3be7_A		408	Zn-dependent arginine carboxypeptidase; unknown so	99.95
2bb0_A		421	Imidazolonepropionase; TIM barrel, hydrolase; 2.00	99.95
4aql_A		476	Guanine deaminase; hydrolase, purine metabolism; H	99.95
3mdu_A		453	N-formimino-L-glutamate iminohydrolase; amonohydra	99.95
2i9u_A		439	Cytosine/guanine deaminase related protein; protei	99.94
2q09_A		416	Imidazolonepropionase; 9252H, NYSGXRC, 3-(2, 5-dio	99.94
2puz_A		419	Imidazolonepropionase; NYSGXRC, PSI-2, N-formimino	99.94
1ra0_A		430	Cytosine deaminase; alpha-beta barrel, hexamer, co	99.94
4f0l_A		458	Amidohydrolase; ssgcid, structural genomics, seatt	99.93
2qt3_A		403	N-isopropylammelide isopropyl amidohydrolase; N-is	99.92
2z00_A		426	Dihydroorotase; zinc binding protein, hydrolase, m	99.92
3sfw_A		461	Dihydropyrimidinase; hydrolase, zinc binding; HET:	99.92
4ac7_C		570	Urease subunit alpha; hydrolase, bacillus pasteuri	99.92
4ubp_C		570	Protein (urease (chain C)); bacillus pasteurii, ni	99.92
3e74_A		473	Allantoinase; (beta/alpha)8-barrel domain, small b	99.92
3v7p_A		427	Amidohydrolase family protein; iron binding site,	99.92
1gkr_A		458	Hydantoinase, non-ATP dependent L-selective hydant	99.91
2fty_A		559	Dihydropyrimidinase; alpha/beta barrel, beta-sandw	99.91
3dc8_A		490	Dihydropyrimidinase; TIM-barrel, hydrolase; HET: K	99.91
3hm7_A		448	Allantoinase; metallo-dependent hydrolase, protein	99.91
1p1m_A		406	Hypothetical protein TM0936; putative metal depend	99.91
1xrt_A		467	Dihydroorotase, dhoase; amidohydrolase, metalloenz	99.89
2imr_A		420	Hypothetical protein DR_0824; zinc, NYSGXRC, PSI2,	99.89
1e9y_B		569	Urease subunit beta; hydrolase, dodecamer; HET: KC	99.88
3ooq_A		396	Amidohydrolase; structural genomics, protein struc	99.88
2gwn_A		452	Dihydroorotase; zinc-binding prote structural geno	99.88
1gkp_A		458	Hydantoinase; hydrolase, dihydropyrimidinase, cycl	99.88
3gri_A		424	Dihydroorotase, dhoase; hydrolase, IDP00795, metal	99.86
1nfg_A		457	D-hydantoinase; TIM barrel, hydrolase; HET: KCX; 2	99.86
2vm8_A		501	Dihydropyrimidinase-related protein 2; neurogenesi	99.86
3mpg_A		428	Dihydroorotase, dhoase; hydrolase; 2.60A {Bacillus	99.86
2vun_A		386	Enamidase; nicotinate degradation, binuclear metal	99.85
2ftw_A		521	Dihydropyrimidine amidohydrolase; (beta-alpha)8-ba	99.84
2ogj_A		417	Dihydroorotase; TIM barrel, binuclear zinc, imidaz	99.83
2ics_A		379	Adenine deaminase; TIM barrel, binuclear zinc, ade	99.83
3hpa_A		479	Amidohydrolase; signature of Zn ligands, structura	99.82
3pnu_A		359	Dihydroorotase; TIM barrel, zinc binding, hydrolas	99.81
2vr2_A		541	Dihydropyrimidinase; hydantoinase, metal-binding,	99.79
1yrr_A		382	N-acetylglucosamine-6-phosphate deacetylase; (beta	99.79
3mtw_A		403	L-arginine carboxypeptidase CC2672; hydrolase; HET	99.77
3gip_A		480	N-acyl-D-glutamate deacylase; amidohydrolase famil	99.76
3nqb_A		608	Adenine deaminase 2; PSI-II, structural genomics,	99.67
3mkv_A		426	Putative amidohydrolase; sargasso SEA, structural	99.65
2vhl_A		396	N-acetylglucosamine-6-phosphate deacetylase; N- ac	99.65
2z26_A		347	Dihydroorotase, dhoase; TIM barrel, hydrolase; HET	99.65
1rk6_A		496	D-aminoacylase; TIM barrel, beta barrel, insertion	99.61
1onw_A		390	Isoaspartyl dipeptidase; amidohydrolase, hydrolase	99.57
4gy7_A		840	Urease; JACK bean, hydrolase, ME binding, nickel;	99.54
1o12_A		376	N-acetylglucosamine-6-phosphate deacetylase; struc	99.5
3iv8_A		381	N-acetylglucosamine-6-phosphate deacetylase; IDP01	99.45
2pgf_A		371	Adenosine deaminase; metallo-dependent hydrolase,	99.34
4ep8_C		566	Urease subunit alpha; alpha-beta barrel, nickel me	99.19
3pao_A		326	Adenosine deaminase; structural genomics, PSI-2, p	99.19
3rys_A		343	Adenosine deaminase 1; SGX, hydrolase; HET: ADE; 2	99.17
3iar_A		367	Adenosine deaminase; purine metabolism structural	99.15
4gxw_A		380	Adenosine deaminase; amidohydrolase, COG1816, EFI,	98.6
1bf6_A		291	Phosphotriesterase homology protein; hypothetical	98.49
3ovg_A		363	Amidohydrolase; structural genomics, PSI-2, protei	98.48
3k2g_A		364	Resiniferatoxin-binding, phosphotriesterase- relat	98.28
3gtx_A		339	Organophosphorus hydrolase; mutant, amidohydrolase	98.27
2a3l_A		701	AMP deaminase, AMPD; atampd, AT2G38280, adenosine	98.25
3pnz_A		330	Phosphotriesterase family protein; amidohydrolase	98.19
2ob3_A		330	Parathion hydrolase; metalloenzyme, TIM barrel, ne	98.17
3rhg_A		365	Putative phophotriesterase; hydrolase, amidohydrol	98.1
3tn4_A		360	Phosphotriesterase; lactonase, hydrolase; HET: KCX	98.06
3lgd_A		508	Adenosine deaminase CECR1; TIM barrel, dimerizatio	97.97
1yix_A		265	Deoxyribonuclease YCFH; TIM barrel, zinc ION, NEW	97.91
1zzm_A		259	Putative deoxyribonuclease YJJV; hydrolaze, zinc,	97.87
1xwy_A		264	DNAse TATD, deoxyribonuclease TATD; TIM barrael, z	97.71
2vc7_A		314	Aryldialkylphosphatase; phosphotriesterase, promis	97.64
3rcm_A		287	TATD family hydrolase; HET: CIT; 2.05A {Pseudomona	97.64
1j6o_A		268	TATD-related deoxyribonuclease; structural genomic	97.55
2y1h_A		272	Putative deoxyribonuclease tatdn3; hydrolase; 2.50	97.55
2gzx_A		265	Putative TATD related DNAse; deoxyribonuclease, NE	97.26
2xio_A		301	Putative deoxyribonuclease tatdn1; hydrolase; 1.19	97.09
4i6k_A		294	Amidohydrolase family protein; enzyme function ini	96.94
3gg7_A		254	Uncharacterized metalloprotein; structural genomic	96.85
3guw_A		261	Uncharacterized protein AF_1765; alpha-beta protei	96.73
2ffi_A		288	2-pyrone-4,6-dicarboxylic acid hydrolase, putativ;	96.52
3cjp_A		272	Predicted amidohydrolase, dihydroorotase family; s	96.47
3irs_A		291	Uncharacterized protein BB4693; structural genomic	96.12
3ipw_A		325	Hydrolase TATD family protein; niaid, ssgcid, seat	95.81
2f6k_A		307	Metal-dependent hydrolase; metal dependent hydroly	95.54
2dvt_A		327	Thermophilic reversible gamma-resorcylate decarbo;	95.51
4do7_A		303	Amidohydrolase 2; enzyme function initiative, EFI,	94.85
3nur_A		357	Amidohydrolase; TIM barrel; 1.75A {Staphylococcus	94.33
2gwg_A		350	4-oxalomesaconate hydratase; TIM-barrel like prote	94.14
3ij6_A		312	Uncharacterized metal-dependent hydrolase; structu	93.78
4inf_A		373	Metal-dependent hydrolase; amidohydrolase, metal b	93.52
4d9a_A		303	2-pyrone-4,6-dicarbaxylate hydrolase; structural g	93.11
2hbv_A		334	2-amino-3-carboxymuconate 6-semialdehyde decarbox;	91.35
2wm1_A		336	2-amino-3-carboxymuconate-6-semialdehyde decarboxy	90.86
1v77_A		212	PH1877P, hypothetical protein PH1877; RNAse P prot	90.82
3e2v_A		401	3'-5'-exonuclease; structural genomics, hydrolase,	90.13
2i5g_A		325	Amidohydrolase; NYSGXRC, NYSGXRC-9311A, PSI2, stru	86.82
2qpx_A		376	Predicted metal-dependent hydrolase of the TIM-BA;	86.66
4dzi_A		423	Putative TIM-barrel metal-dependent hydrolase; ami	80.87

>3icj_A Uncharacterized metal-dependent hydrolase; structural genomics, amidohydrolase, PSI-2, protein structur initiative; HET: KCX; 1.95A {Pyrococcus furiosus} PDB: 3etk_A* 3igh_X*	Back alignment and structure

Probab=100.00  E-value=1.4e-67  Score=540.24  Aligned_cols=382  Identities=29%  Similarity=0.424  Sum_probs=333.8

Q ss_pred             HHHHHHHHhcCCCCeEEEeCCCCCCCCCCCCChhhhhhhCCCCeEEEEeccCchhhhcHHHHHHcCCCCCCCCCCCCeEe
Q 013175            4 DTVVQIYADSKKGSWILGGGWNNDLWGGDLPMASWIDDITPHNPVWLSRMDGHMGLANSVALQLVGITNLSEDPNGGTIM   83 (448)
Q Consensus         4 ~~~~~~~~~~~~~~wi~g~g~~~~~~~~~~p~~~~LD~~~~~~Pv~l~~~~~H~~~~Ns~al~~~gi~~~~~~~~gg~i~   83 (448)
                      +.++++.++.... ||+|+||+++.| ++.||+++||++  ++||+|.+.|||.+|+||+||+++|| +++|+|.     
T Consensus       123 ~e~~~~l~~~~~~-wi~g~G~~~~~~-~~~pt~~~LD~~--~~Pv~l~~~~~H~~~~Ns~AL~~~gi-~~t~~p~-----  192 (534)
T 3icj_A          123 EELVERVKKGRGR-IIFGFGWDQDEL-GRWPTREDLDVI--DRPVFLYRRCFHVAVMNSKMIDLLNL-KPSKDFD-----  192 (534)
T ss_dssp             HHHHHHHHTCCSS-SEEEEEECHHHH-SSCCCHHHHTTS--SSCEEEEETTSSEEEECHHHHHHHCC-CCCTTEE-----
T ss_pred             HHHHHHHHHHHhh-CEEEcccCHHHh-cCCCCHHHHhhC--CCeEEEEecCCcHhHHhHHHHHHcCC-CCCCCCC-----
Confidence            4455555554333 999999999999 789999999999  99999999999999999999999999 8888874     


Q ss_pred             eCCCCCCCchhHHHHHHHhhhcCCC-C-CHHHHHHHHHHHHHHHHhcCcceeEeCccCCCCCccccchHHHHHHHHHHHh
Q 013175           84 KTSSGEPTGLLIDAAMKLILPWIPE-V-SVDERREALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFADVYQWASY  161 (448)
Q Consensus        84 ~d~~G~~tG~l~e~a~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (448)
                          |+ ||+|.|+|+.++.+.+|. + +.+++++.++.+++.+++.|||+|+|++..          ...+++|+++.+
T Consensus       193 ----G~-tG~l~e~A~~~v~~~~p~~~l~~~~~~~~l~~a~~~~~~~GiTsv~d~~~~----------~~~~~~~~~l~~  257 (534)
T 3icj_A          193 ----ES-TGIVRERALEESRKIINEKILTVKDYKHYIESAQEHLLSLGVHSVGFMSVG----------EKALKALFELER  257 (534)
T ss_dssp             ----TT-TTEEEHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTEEEEEEEEEC----------HHHHHHHHHHHH
T ss_pred             ----CC-CceeeHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHhCCCEEEEeCCCC----------HHHHHHHHHHHh
Confidence                78 999999999988888887 7 999999999999999999999999998632          245678888888


Q ss_pred             cCCCeeEEEEccCCcchhhHHHHHHhc-CCcCCCCeeeCceEEEecCCcCCCCccccCCcCCCCCCCcccCCCHHHHHHH
Q 013175          162 SEKMKIRVCLFFPLETWSSLADLINKT-GHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVMELESLLSM  240 (448)
Q Consensus       162 ~~~l~irv~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~K~f~DG~~~~~ta~~~~py~~~~~~~g~~~~~~~~l~~~  240 (448)
                      +|++++|++.+.....   +.++.... ....+++++++++|+|+||+++++||+|.+||.+.++..|.+.+++++|+++
T Consensus       258 ~g~l~~rv~~~~~~~~---~~~~~~~~~~~~~~~~~~~~gvK~~~DG~~~~~tA~l~~pY~d~~~~~g~~~~~~e~l~~~  334 (534)
T 3icj_A          258 EGRLKMNVFAYLSPEL---LDKLEELNLGKFEGRRLRIWGVKLFVDGSLGARTALLSEPYTDNPTTSGELVMNKDEIVEV  334 (534)
T ss_dssp             TTCCCSEEEEEECGGG---HHHHHHHTCCSEECSSEEEEEEEEESCCCTTTTCSCCSSCBTTBTTCCCCCSSCHHHHHHH
T ss_pred             CCCCcEEEEEecCHHH---HHHHHHhccccCCCCcEEEEeEEEEEeCCCCccchhhcCCccCCCCCCCcccCCHHHHHHH
Confidence            9999999987654322   33332221 2345788999999999999999999999999999988899999999999999


Q ss_pred             HHHHHHCCCcEEEEecchHHHHHHHHHHHHhHHhcCCCCCCCeEEecccCChhhHHHHHhCCcEEeeccccccCchhHHH
Q 013175          241 TMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQHLLDDADSAR  320 (448)
Q Consensus       241 ~~~a~~~g~~v~iHa~gd~a~~~~l~a~~~~~~~~~~~~~r~~i~H~~~~~~~~i~~~~~~gv~~~~~P~~~~~~~~~~~  320 (448)
                      ++.|+++|+++++|++|+.+++.++++++++.       .|++|+|+++++++++++++++|+.+++||.+...+. ++.
T Consensus       335 v~~A~~~G~~v~~Ha~gd~ai~~~l~a~~~~~-------~r~~ieH~~~~~~e~i~~la~~gv~~~~~P~~~~~~~-~~~  406 (534)
T 3icj_A          335 IERAKPLGLDVAVHAIGDKAVDVALDAFEEAE-------FSGRIEHASLVRDDQLERIKELKVRISAQPHFIVSDW-WIV  406 (534)
T ss_dssp             HHHHTTTTCEEEEEECSHHHHHHHHHHHHHHT-------CCCEEEECCBCCHHHHHHHHHHTCEEEECTTHHHHCT-THH
T ss_pred             HHHHHHCCCEEEEEEcChHHHHHHHHHHHhcc-------CCCEEEECCCCCHHHHHHHHHcCCeEEEccccccchh-HHH
Confidence            99999999999999999999999999998764       5899999999999999999999999999999876544 556


Q ss_pred             HhcCHhhhhhhhhhHHHHHHcCCceeecCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCCCCCCCHHHHHHHHhHHHHHHc
Q 013175          321 KKLGVDRAERESYLFQSLLANNALLALGSDWPVADINPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARAC  400 (448)
Q Consensus       321 ~~~g~~r~~~~~~~~~~~~~~Gv~v~~gSD~p~~~~~p~~~~~~a~~r~~~~~~~~~~~~~~ls~~~al~~~T~n~A~~~  400 (448)
                      .++|++|. +..+|+++++++ +++++|||+|+++.+||.+++.+++|.      .+.+++++|+++||+++|.|+|+++
T Consensus       407 ~~lg~~r~-~~~~p~~~l~~~-v~valGSD~p~~~~~p~~~~~~av~r~------~~~~~~~ls~~eaL~~~T~~~A~~l  478 (534)
T 3icj_A          407 NRVGEERA-KWAYRLKTLSSI-TKLGFSTDSPIEPADPWVSIDAAVNRY------VVDPGERVSREEALHLYTHGSAQVT  478 (534)
T ss_dssp             HHHHHHHG-GGBTCHHHHHHH-SCEEECCTTTTSCCCHHHHHHHHHHCC------SSCGGGCCCHHHHHHHTTHHHHHHT
T ss_pred             HhhCHHHH-hccHHHHHHHHh-CCEEeecCCCCCCCCHHHHHHHHHhcc------ccCcccCCCHHHHHHHHHHHHHHHh
Confidence            67888887 788999999999 999999999999999999999999882      3456789999999999999999999


Q ss_pred             ccCCCcccccCCCcccEEEecCCCCCChhh
Q 013175          401 FLENDVGSLSPGKIADFVILSTSSWEDFAA  430 (448)
Q Consensus       401 g~~~~~Gsi~~Gk~ADlvvld~d~~~~~~~  430 (448)
                      |++ ++|+|++||.|||||+|.||+++...
T Consensus       479 g~e-~~GsLe~Gk~ADlvvld~dpl~~~~~  507 (534)
T 3icj_A          479 LAE-DLGKLERGFRAEYIILDRDPLKEMKG  507 (534)
T ss_dssp             TCT-TCSCCSTTSBCCEEEESSCTTC----
T ss_pred             CCC-CCeEECCCCCcCEEEECCChhhcccc
Confidence            999 89999999999999999999985443

PyMOL of 3icj

>3ls9_A Triazine hydrolase; atrazine chlorohydrolase TRZN; 1.40A {Arthrobacter aurescens} PDB: 3lsc_A* 3lsb_A*	Back alignment and structure

>2r8c_A Putative amidohydrolase; unknown source, sargasso SEA, structural genomics, protein structure initiative, PSI; 2.31A {Unidentified} PDB: 3mkv_A*	Back alignment and structure

>3feq_A Putative amidohydrolase; unknown source, sargasso SEA, structural GEN protein structure initiative, PSI; 2.63A {Unidentified} PDB: 3lwy_A* 3n2c_A*	Back alignment and structure

>2qs8_A XAA-Pro dipeptidase; amidohydrolase, TIM barrel, protein structure initiative, PSI-2, NYSGXRC, structural genomics; 2.33A {Alteromonas macleodii} SCOP: b.92.1.9 c.1.9.18	Back alignment and structure

>2paj_A Putative cytosine/guanine deaminase; NYSGXRC, PSI-II, amidohydrolase, sargasso SEA, enviro sample, structural genomics; 2.70A {Unidentified} SCOP: b.92.1.4 c.1.9.9	Back alignment and structure

>4f0r_A 5-methylthioadenosine/S-adenosylhomocysteine DEAM; structural genomics, PSI-biology; HET: MSE MTA; 1.80A {Chromobacterium violaceum} PDB: 4f0s_A*	Back alignment and structure

>2ood_A BLR3880 protein; PSI-II, PSI-2, guanine deaminase, guanine, structural genomics, protein structure initiative; HET: GUN; 2.62A {Bradyrhizobium japonicum} SCOP: b.92.1.4 c.1.9.9	Back alignment and structure

>4dyk_A Amidohydrolase; adenosine deaminase, nysgrc, structural GENO PSI-biology, NEW YORK structural genomics research consorti hydrolase; 2.00A {Pseudomonas aeruginosa}	Back alignment and structure

>4dzh_A Amidohydrolase; adenosine deaminase, nysgrc, structural GENO YORK structural genomics research consortium; 1.55A {Xanthomonas campestris PV}	Back alignment and structure

>3lnp_A Amidohydrolase family protein OLEI01672_1_465; TIM barrel, beta-fold, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Oleispira antarctica}	Back alignment and structure

>2p9b_A Possible prolidase; protein structure initiative II, PSI-2, amidohydrolase, structural genomics; 1.70A {Bifidobacterium longum NCC2705} SCOP: b.92.1.10 c.1.9.17	Back alignment and structure

>3be7_A Zn-dependent arginine carboxypeptidase; unknown source, amidohydrolase, sargasso SEA, structural GEN protein structure initiative, PSI; HET: ARG; 2.30A {Unidentified} SCOP: b.92.1.9 c.1.9.18 PDB: 3dug_A*	Back alignment and structure

>2bb0_A Imidazolonepropionase; TIM barrel, hydrolase; 2.00A {Bacillus subtilis} SCOP: b.92.1.10 c.1.9.17 PDB: 2g3f_A	Back alignment and structure

>4aql_A Guanine deaminase; hydrolase, purine metabolism; HET: TXC; 1.99A {Homo sapiens} PDB: 2uz9_A* 3e0l_A	Back alignment and structure

>3mdu_A N-formimino-L-glutamate iminohydrolase; amonohydralase family, N-formimino-L-glutamate iminohydrolas guanidino-L-glutamate; HET: NGQ; 1.40A {Pseudomonas aeruginosa} PDB: 3mdw_A*	Back alignment and structure

>2i9u_A Cytosine/guanine deaminase related protein; protein structure initiative II (PSI-II), amidohydrol guanine deaminase; HET: GUN; 2.05A {Clostridium acetobutylicum} SCOP: b.92.1.4 c.1.9.9	Back alignment and structure

>2q09_A Imidazolonepropionase; 9252H, NYSGXRC, 3-(2, 5-dioxo-imidazo 4YL)-propionic acid, PSI-2 community, structural genomics, structure initiative; HET: DI6; 1.97A {Unidentified} SCOP: b.92.1.10 c.1.9.17 PDB: 2oof_A*	Back alignment and structure

>2puz_A Imidazolonepropionase; NYSGXRC, PSI-2, N-formimino-L- glutamate, product-bound, structural genomics, protein STRU initiative; HET: NIG; 1.83A {Agrobacterium tumefaciens str} SCOP: b.92.1.10 c.1.9.17 PDB: 2gok_A	Back alignment and structure

>1ra0_A Cytosine deaminase; alpha-beta barrel, hexamer, conformation change, D314G mutant, hydrolase; 1.12A {Escherichia coli} SCOP: b.92.1.2 c.1.9.5 PDB: 1r9x_A 1ra5_A 1r9y_A 1r9z_A 1rak_A 3r0d_A* 3o7u_A* 3rn6_A* 1k6w_A 1k70_A 3g77_A	Back alignment and structure

>4f0l_A Amidohydrolase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Brucella melitensis biovar abortus}	Back alignment and structure

>2qt3_A N-isopropylammelide isopropyl amidohydrolase; N-isopropylammelide isopropylaminohydrolase ATZC, structural genomics, NYSGXRC, target 9364B; 2.24A {Pseudomonas SP}	Back alignment and structure

>2z00_A Dihydroorotase; zinc binding protein, hydrolase, metal-binding, pyrimidine biosynthesis, structural genomics, NPPSFA; 2.42A {Thermus thermophilus}	Back alignment and structure

>3sfw_A Dihydropyrimidinase; hydrolase, zinc binding; HET: KCX; 1.73A {Brevibacillus agri} PDB: 1yny_A 1k1d_A*	Back alignment and structure

>4ac7_C Urease subunit alpha; hydrolase, bacillus pasteurii; HET: CXM KCX FLC; 1.50A {Sporosarcina pasteurii} PDB: 1s3t_C* 2ubp_C* 3ubp_C* 1ubp_C* 4ubp_C* 1ie7_C*	Back alignment and structure

>4ubp_C Protein (urease (chain C)); bacillus pasteurii, nickel, acetohydroxamic acid, metalloenzyme, hydrolase; HET: KCX; 1.55A {Sporosarcina pasteurii} SCOP: b.92.1.1 c.1.9.2 PDB: 1s3t_C* 2ubp_C* 3ubp_C* 1ubp_C* 1ie7_C*	Back alignment and structure

>3e74_A Allantoinase; (beta/alpha)8-barrel domain, small beta-sheet domain, hydrolase, metal-binding, purine metabolism, zinc; HET: KCX; 2.10A {Escherichia coli}	Back alignment and structure

>3v7p_A Amidohydrolase family protein; iron binding site, enzyme functio initiative, EFI; HET: TLA; 1.35A {Nitratiruptor SP}	Back alignment and structure

>1gkr_A Hydantoinase, non-ATP dependent L-selective hydantoinase; hydrolase, dihydropyrimidinase, cyclic amidase; HET: KCX; 2.60A {Arthrobacter aurescens} SCOP: b.92.1.3 c.1.9.6	Back alignment and structure

>2fty_A Dihydropyrimidinase; alpha/beta barrel, beta-sandwich, hydrolase; HET: KCX; 2.40A {Lachancea kluyveri} SCOP: b.92.1.3 c.1.9.6 PDB: 2fvk_A* 2fvm_A*	Back alignment and structure

>3dc8_A Dihydropyrimidinase; TIM-barrel, hydrolase; HET: KCX; 1.85A {Sinorhizobium meliloti}	Back alignment and structure

>3hm7_A Allantoinase; metallo-dependent hydrolase, protein structure initiative, PSI-2, NEW YORK structural genomix research CON nysgxrc; 2.60A {Bacillus halodurans}	Back alignment and structure

>1p1m_A Hypothetical protein TM0936; putative metal dependent hydrolase, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: b.92.1.4 c.1.9.9 PDB: 2plm_A* 1j6p_A	Back alignment and structure

>1xrt_A Dihydroorotase, dhoase; amidohydrolase, metalloenzyme, pyrimidine; 1.61A {Aquifex aeolicus} SCOP: b.92.1.3 c.1.9.6 PDB: 1xrf_A 3d6n_A*	Back alignment and structure

>2imr_A Hypothetical protein DR_0824; zinc, NYSGXRC, PSI2, structural genomics, protein structure initiative; 1.78A {Deinococcus radiodurans} SCOP: b.92.1.11 c.1.9.16	Back alignment and structure

>1e9y_B Urease subunit beta; hydrolase, dodecamer; HET: KCX; 3.00A {Helicobacter pylori} SCOP: b.92.1.1 c.1.9.2 PDB: 1e9z_B* 3qga_C* 3qgk_C*	Back alignment and structure

>3ooq_A Amidohydrolase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, H PSI-2; 2.06A {Thermotoga maritima}	Back alignment and structure

>2gwn_A Dihydroorotase; zinc-binding prote structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; HET: KCX GOL; 1.85A {Porphyromonas gingivalis}	Back alignment and structure

>1gkp_A Hydantoinase; hydrolase, dihydropyrimidinase, cyclic amidase; HET: KCX EPE; 1.29A {Thermus SP} SCOP: b.92.1.3 c.1.9.6 PDB: 1gkq_A*	Back alignment and structure

>3gri_A Dihydroorotase, dhoase; hydrolase, IDP00795, metal-binding, pyrimidine biosynthesis, structural genomics; 2.00A {Staphylococcus aureus subsp}	Back alignment and structure

>1nfg_A D-hydantoinase; TIM barrel, hydrolase; HET: KCX; 2.70A {Ralstonia pickettii} SCOP: b.92.1.3 c.1.9.6	Back alignment and structure

>2vm8_A Dihydropyrimidinase-related protein 2; neurogenesis, phosphoprotein, differentiation, CRMP, cytoplasm, TIM barrel, polymorphism, axonal pathfinding; 1.9A {Homo sapiens} PDB: 2gse_A 1kcx_A	Back alignment and structure

>3mpg_A Dihydroorotase, dhoase; hydrolase; 2.60A {Bacillus anthracis}	Back alignment and structure

>2vun_A Enamidase; nicotinate degradation, binuclear metal center, amidohydrolases, stereospecificity, hydrolase; 1.89A {Eubacterium barkeri}	Back alignment and structure

>2ftw_A Dihydropyrimidine amidohydrolase; (beta-alpha)8-barrel, beta-sandwich; HET: KCX; 2.05A {Dictyostelium discoideum} SCOP: b.92.1.3 c.1.9.6	Back alignment and structure

>2ogj_A Dihydroorotase; TIM barrel, binuclear zinc, imidazole complex, amido hydrola 9244B, structural genomics, PSI-2; HET: KCX; 2.62A {Agrobacterium tumefaciens}	Back alignment and structure

>2ics_A Adenine deaminase; TIM barrel, binuclear zinc, adenine complex, amidohydrolase, structural genomics, PSI, protein structure initiative; HET: KCX ADE; 2.30A {Enterococcus faecalis} SCOP: b.92.1.8 c.1.9.14	Back alignment and structure

>3hpa_A Amidohydrolase; signature of Zn ligands, structural genomics, NYSGXRC, target 9236E, PSI-2, protein structure initiative; 2.20A {Unidentified}	Back alignment and structure

>3pnu_A Dihydroorotase; TIM barrel, zinc binding, hydrolase, structu genomics, center for structural genomics of infectious DISE csgid; HET: KCX; 2.40A {Campylobacter jejuni subsp}	Back alignment and structure

>2vr2_A Dihydropyrimidinase; hydantoinase, metal-binding, disease mutation, dihydropyrimi amidohydrolase, nucleotide metabolism, DPYS, dhpase, hydrolase; 2.80A {Homo sapiens}	Back alignment and structure

>1yrr_A N-acetylglucosamine-6-phosphate deacetylase; (beta/alpha)8 barrel, beta sandwich, hydrolase; 2.00A {Escherichia coli} SCOP: b.92.1.5 c.1.9.10 PDB: 1ymy_A 2p50_A 2p53_A*	Back alignment and structure

>3mtw_A L-arginine carboxypeptidase CC2672; hydrolase; HET: KCX M3R; 1.70A {Caulobacter vibrioides}	Back alignment and structure

>3gip_A N-acyl-D-glutamate deacylase; amidohydrolase family, hydrolase; 1.50A {Bordetella bronchiseptica} PDB: 3giq_A*	Back alignment and structure

>3nqb_A Adenine deaminase 2; PSI-II, structural genomics, protein structure initiative, N SGX research center for structural genomics, nysgxrc; 2.21A {Agrobacterium tumefaciens} PDB: 3t81_A 3t8l_A	Back alignment and structure

>3mkv_A Putative amidohydrolase; sargasso SEA, structural genomics, protein structure initiat NEW YORK structural genomix research consortium, nysgxrc; HET: KCX; 2.40A {Undefined}	Back alignment and structure

>2vhl_A N-acetylglucosamine-6-phosphate deacetylase; N- acetyleglucosamine-6-phosphate, carbohydrate metabolism, hydrolase; HET: GLP PGE; 2.05A {Bacillus subtilis}	Back alignment and structure

>2z26_A Dihydroorotase, dhoase; TIM barrel, hydrolase; HET: KCX DOR NCD; 1.29A {Escherichia coli} PDB: 2z24_A* 2z25_A* 2eg6_A* 1xge_A* 2eg7_A* 2eg8_A* 2z27_A* 2e25_A* 2z28_A* 2z29_A* 3mjm_A* 2z2a_A* 1j79_A* 2z2b_A* 3ihn_A* 3jze_A*	Back alignment and structure

>1rk6_A D-aminoacylase; TIM barrel, beta barrel, insertion, hydrolase; 1.43A {Alcaligenes faecalis} SCOP: b.92.1.6 b.92.1.6 c.1.9.11 PDB: 1rjp_A 1v51_A 1rjq_A 1rjr_A 1rk5_A 1v4y_A 1m7j_A	Back alignment and structure

>1onw_A Isoaspartyl dipeptidase; amidohydrolase, hydrolase, metalloprotease; HET: KCX; 1.65A {Escherichia coli} SCOP: b.92.1.7 c.1.9.13 PDB: 1onx_A* 1po9_A* 1poj_A* 1pok_B* 2aqo_A* 1ybq_A* 2aqv_A*	Back alignment and structure

>4gy7_A Urease; JACK bean, hydrolase, ME binding, nickel; HET: CME KCX; 1.49A {Canavalia ensiformis} PDB: 3la4_A* 4h9m_A*	Back alignment and structure

>1o12_A N-acetylglucosamine-6-phosphate deacetylase; structural genomics, TM0814, JCSG, PSI, protein structure initiative; 2.50A {Thermotoga maritima} SCOP: b.92.1.5 c.1.9.10	Back alignment and structure

>3iv8_A N-acetylglucosamine-6-phosphate deacetylase; IDP01334, fruct phosphate, carbohydrate metabolism, hydrolase; HET: F6P; 2.53A {Vibrio cholerae} PDB: 3egj_A*	Back alignment and structure

>2pgf_A Adenosine deaminase; metallo-dependent hydrolase, structural genomics, medical ST genomics of pathogenic protozoa consortium, MSGPP; HET: MSE ADN; 1.89A {Plasmodium vivax} PDB: 2pgr_A* 2qvn_A* 3ewc_A* 3ewd_A* 2amx_A	Back alignment and structure

>4ep8_C Urease subunit alpha; alpha-beta barrel, nickel metalloenzyme, hydrolase, radiatio; HET: KCX; 1.55A {Enterobacter aerogenes} PDB: 1ef2_A* 4epb_C* 4epd_C* 4epe_C* 1ejx_C* 1ejw_C* 1fwj_C* 1kra_C 2kau_C* 1a5k_C 1ejv_C* 1ejt_C* 1eju_C* 1ejs_C* 1a5m_C 1a5n_C 1ejr_C* 1a5l_C 1a5o_C 1fwa_C* ...	Back alignment and structure

>3pao_A Adenosine deaminase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; HET: ADE; 2.49A {Pseudomonas aeruginosa} PDB: 3pan_A* 3ou8_A* 3pbm_A*	Back alignment and structure

>3rys_A Adenosine deaminase 1; SGX, hydrolase; HET: ADE; 2.60A {Arthrobacter aurescens} SCOP: c.1.9.0	Back alignment and structure

>3iar_A Adenosine deaminase; purine metabolism structural genomics, structural genomics consortium, SGC, D mutation, hereditary hemolytic anemia, hydrolase; HET: 3D1; 1.52A {Homo sapiens} SCOP: c.1.9.1 PDB: 2bgn_E* 1w1i_E* 1qxl_A* 1krm_A* 1vfl_A 1ndv_A* 1ndy_A* 1ndz_A* 1o5r_A* 1uml_A* 1v79_A* 1v7a_A* 1ndw_A 1wxy_A* 1wxz_A* 2e1w_A* 2z7g_A* 2ada_A* 3mvi_A 1a4l_A* ...	Back alignment and structure

>4gxw_A Adenosine deaminase; amidohydrolase, COG1816, EFI, structural genomics, hydrolase; 1.30A {Burkholderia ambifaria}	Back alignment and structure

>1bf6_A Phosphotriesterase homology protein; hypothetical protein; 1.70A {Escherichia coli} SCOP: c.1.9.3	Back alignment and structure

>3ovg_A Amidohydrolase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, NYSGXRC, HAD, PSI; HET: KCX; 2.06A {Mycoplasma synoviae} PDB: 3msr_A*	Back alignment and structure

>3k2g_A Resiniferatoxin-binding, phosphotriesterase- related protein; TIM barrel, binuclear zinc, protein structure initiative II (PSI II); 1.80A {Rhodobacter sphaeroides 2}	Back alignment and structure

>3gtx_A Organophosphorus hydrolase; mutant, amidohydrolase, alpha-beta barrel; HET: KCX; 1.62A {Deinococcus radiodurans} PDB: 2zc1_A* 3gti_A* 3gu9_A* 3gtf_A* 3gth_A* 3gu2_A* 3gu1_A* 3fdk_A* 3htw_A*	Back alignment and structure

>2a3l_A AMP deaminase, AMPD; atampd, AT2G38280, adenosine 5'-monophosphate deaminase, COF 5'-phosphate, structural genomics; HET: CF5; 3.34A {Arabidopsis thaliana} SCOP: c.1.9.1	Back alignment and structure

>3pnz_A Phosphotriesterase family protein; amidohydrolase fold; HET: KCX; 1.60A {Listeria monocytogenes serotype 4b strorganism_taxid} SCOP: c.1.9.0	Back alignment and structure

>2ob3_A Parathion hydrolase; metalloenzyme, TIM barrel, nerve agents; HET: KCX BTB; 1.04A {Brevundimonas diminuta} PDB: 1psc_A* 1jgm_A* 3cak_A* 1ez2_A* 1eyw_A* 1hzy_A 1i0b_A 1i0d_A 1p6b_A* 1p6c_A* 2oql_A* 2o4q_A* 3cs2_A* 3e3h_A* 1qw7_A* 1dpm_A* 2o4m_A* 1pta_A 3c86_A* 2d2j_A ...	Back alignment and structure

>3rhg_A Putative phophotriesterase; hydrolase, amidohydrolase, zinc binding site, enzyme functio initiative, EFI; HET: SO4; 1.53A {Proteus mirabilis}	Back alignment and structure

>3tn4_A Phosphotriesterase; lactonase, hydrolase; HET: KCX; 1.50A {Geobacillus kaustophilus} PDB: 3tnb_A* 3tn3_A* 3tn5_A* 3tn6_A* 3ojg_A* 3orw_A* 3f4c_A* 3f4d_A*	Back alignment and structure

>3lgd_A Adenosine deaminase CECR1; TIM barrel, dimerization and receptor binding domains, glyco hydrolase, growth factor, secreted; HET: NAG; 2.00A {Homo sapiens} PDB: 3lgg_A*	Back alignment and structure

>1yix_A Deoxyribonuclease YCFH; TIM barrel, zinc ION, NEW YORK SGX center for structural genomics, nysgxrc; 1.90A {Escherichia coli} SCOP: c.1.9.12	Back alignment and structure

>1zzm_A Putative deoxyribonuclease YJJV; hydrolaze, zinc, PEG, structural genomics, PSI; HET: P33; 1.80A {Escherichia coli} SCOP: c.1.9.12	Back alignment and structure

>1xwy_A DNAse TATD, deoxyribonuclease TATD; TIM barrael, zinc ION, structural genomics, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.1.9.12	Back alignment and structure

>2vc7_A Aryldialkylphosphatase; phosphotriesterase, promiscuous activities, enzyme evolution, hyperthermophilic, lactonase, hydrolase; HET: KCX GOL HT5; 2.05A {Sulfolobus solfataricus} PDB: 2vc5_A*	Back alignment and structure

>3rcm_A TATD family hydrolase; HET: CIT; 2.05A {Pseudomonas putida}	Back alignment and structure

>1j6o_A TATD-related deoxyribonuclease; structural genomics, TM0667, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.80A {Thermotoga maritima} SCOP: c.1.9.12	Back alignment and structure

>2y1h_A Putative deoxyribonuclease tatdn3; hydrolase; 2.50A {Homo sapiens}	Back alignment and structure

>2gzx_A Putative TATD related DNAse; deoxyribonuclease, NESG, ZR237, structural GENO PSI, protein structure initiative; 2.20A {Staphylococcus aureus subsp}	Back alignment and structure

>2xio_A Putative deoxyribonuclease tatdn1; hydrolase; 1.19A {Homo sapiens}	Back alignment and structure

>4i6k_A Amidohydrolase family protein; enzyme function initiative, isomerase, structural; HET: CIT; 2.28A {Acinetobacter baumannii}	Back alignment and structure

>3gg7_A Uncharacterized metalloprotein; structural genomics, unknown function, plasmid, PSI-2, protein structure initiative; 1.50A {Deinococcus radiodurans} SCOP: c.1.9.0	Back alignment and structure

>3guw_A Uncharacterized protein AF_1765; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 3.20A {Archaeoglobus fulgidus dsm 4304}	Back alignment and structure

>2ffi_A 2-pyrone-4,6-dicarboxylic acid hydrolase, putativ; TIM-barrel protein., structural genomics, PSI, protein struc initiative; 2.61A {Pseudomonas putida} SCOP: c.1.9.15	Back alignment and structure

>3cjp_A Predicted amidohydrolase, dihydroorotase family; structural genomics, protein structure initiative; 1.85A {Clostridium acetobutylicum atcc 824}	Back alignment and structure

>3irs_A Uncharacterized protein BB4693; structural genomics, PSI-2, protein structure initiative, TI protein; HET: GOL; 1.76A {Bordetella bronchiseptica} PDB: 3k4w_A	Back alignment and structure

>3ipw_A Hydrolase TATD family protein; niaid, ssgcid, seattle structural genomics center for infect disease, dysentery, liver abcess; 1.95A {Entamoeba histolytica hm-1}	Back alignment and structure

>2f6k_A Metal-dependent hydrolase; metal dependent hydrolyse, aminohydro_2, ACMDS, ACMS, trypto metabolism, quinolinic acid, QUIN; 2.50A {Lactobacillus plantarum} SCOP: c.1.9.15	Back alignment and structure

>2dvt_A Thermophilic reversible gamma-resorcylate decarbo; TIM barrel, lyase; 1.70A {Rhizobium SP} SCOP: c.1.9.15 PDB: 2dvu_A* 2dvx_A* 3s4t_A*	Back alignment and structure

>4do7_A Amidohydrolase 2; enzyme function initiative, EFI, structural TIM-barrel fold, putative lactonase; 1.70A {Burkholderia multivorans} PDB: 4dlm_A 4dnm_A* 4dlf_A	Back alignment and structure

>3nur_A Amidohydrolase; TIM barrel; 1.75A {Staphylococcus aureus}	Back alignment and structure

>2gwg_A 4-oxalomesaconate hydratase; TIM-barrel like protein, structural genomics, PSI, protein S initiative; 1.80A {Rhodopseudomonas palustris} SCOP: c.1.9.15	Back alignment and structure

>3ij6_A Uncharacterized metal-dependent hydrolase; structural genomics, amidohydrolase, PSI-2, protein structure initiative; 2.00A {Lactobacillus acidophilus}	Back alignment and structure

>4inf_A Metal-dependent hydrolase; amidohydrolase, metal binding site, enzyme functi initiative, EFI; 1.48A {Novosphingobium aromaticivorans} PDB: 4ing_A*	Back alignment and structure

>2hbv_A 2-amino-3-carboxymuconate 6-semialdehyde decarbox; ACMSD, TIM-barrel, decarboxylase, metaloenzyme, lyase; 1.65A {Pseudomonas fluorescens} SCOP: c.1.9.15 PDB: 2hbx_A	Back alignment and structure

>2wm1_A 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase; neurological disorders, metal-dependent amidohydrolase, kynurenine pathway; HET: 13P; 2.01A {Homo sapiens}	Back alignment and structure

>1v77_A PH1877P, hypothetical protein PH1877; RNAse P protein, TIM-barrel, RNA binding protein; 1.80A {Pyrococcus horikoshii} SCOP: c.6.3.2 PDB: 2czv_A*	Back alignment and structure

>3e2v_A 3'-5'-exonuclease; structural genomics, hydrolase, PSI-2, protein initiative, NEW YORK SGX research center for structural GEN nysgxrc; 1.50A {Saccharomyces cerevisiae}	Back alignment and structure

>2i5g_A Amidohydrolase; NYSGXRC, NYSGXRC-9311A, PSI2, structural genomics, protein structure initiative; 2.60A {Pseudomonas aeruginosa}	Back alignment and structure

>2qpx_A Predicted metal-dependent hydrolase of the TIM-BA; YP_805737.1, putative metal-dependent hydrolase; HET: KCX MSE; 1.40A {Lactobacillus casei}	Back alignment and structure

>4dzi_A Putative TIM-barrel metal-dependent hydrolase; amidohydrolase, bimetal binding site, enzyme FUNC initiative, EFI; HET: SO4; 1.60A {Mycobacterium avium subsp}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		448
d2bb0a1		113	b.92.1.10 (A:3-73,A:374-415) Imidazolonepropionase	2e-09
d1ra0a2		320	c.1.9.5 (A:56-375) Cytosine deaminase catalytic do	2e-06
d2i9ua1		109	b.92.1.4 (A:9-66,A:377-427) Guanine deaminase {Clo	4e-05
d2p9ba2		324	c.1.9.17 (A:71-394) Uncharacterized protein BL1453	1e-04
d2ooda2		325	c.1.9.9 (A:73-397) Guanine deaminase {Bradyrhizobi	6e-04
d2puza1		103	b.92.1.10 (A:17-79,A:381-420) Imidazolonepropionas	0.001
d2qs8a2		310	c.1.9.18 (A:64-373) Xaa-Pro dipeptidase {Alteromon	0.002

>d2bb0a1 b.92.1.10 (A:3-73,A:374-415) Imidazolonepropionase {Bacillus subtilis [TaxId: 1423]} Length = 113	Back information, alignment and structure


class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: Imidazolonepropionase-like
domain: Imidazolonepropionase
species: Bacillus subtilis [TaxId: 1423]

 Score = 52.7 bits (126), Expect = 2e-09
 Identities = 11/108 (10%), Positives = 26/108 (24%), Gaps = 1/108 (0%)

Query: 341 NNALLALGSDWPVADINPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARAC 400
           +  L+ +G    +    P          +           + +            A    
Sbjct: 4   DTILINIGQLLTMESSGPRAGKSMQDLHVIEDAVVGIHEQKIVFAGQKGAEAGYEADEII 63

Query: 401 FLENDVGSLSPGKIADFVILSTSSWEDFAAEVSAS-IEATYVSGVQAY 447
                + +L  G+ AD VI    ++         + +     +G    
Sbjct: 64  DCSGRLVTLKAGRSADLVIWQAPNYMYIPYHYGVNHVHQVMKNGTIVV 111

PyMOL of d2bb0a1

>d1ra0a2 c.1.9.5 (A:56-375) Cytosine deaminase catalytic domain {Escherichia coli [TaxId: 562]} Length = 320	Back information, alignment and structure

>d2i9ua1 b.92.1.4 (A:9-66,A:377-427) Guanine deaminase {Clostridium acetobutylicum [TaxId: 1488]} Length = 109	Back information, alignment and structure

>d2p9ba2 c.1.9.17 (A:71-394) Uncharacterized protein BL1453 {Bifidobacterium longum [TaxId: 216816]} Length = 324	Back information, alignment and structure

>d2ooda2 c.1.9.9 (A:73-397) Guanine deaminase {Bradyrhizobium japonicum [TaxId: 375]} Length = 325	Back information, alignment and structure

>d2puza1 b.92.1.10 (A:17-79,A:381-420) Imidazolonepropionase {Agrobacterium tumefaciens [TaxId: 358]} Length = 103	Back information, alignment and structure

>d2qs8a2 c.1.9.18 (A:64-373) Xaa-Pro dipeptidase {Alteromonas macleodii [TaxId: 28108]} Length = 310	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		448
d1gkpa2		335	D-hydantoinase {Thermus sp. [TaxId: 275]}	99.81
d1p1ma2		281	Hypothetical protein TM0936, probable catalytic do	99.79
d2uz9a2		313	Guanine deaminase {Human (Homo sapiens) [TaxId: 96	99.79
d2i9ua2		310	Guanine deaminase {Clostridium acetobutylicum [Tax	99.78
d1ra0a2		320	Cytosine deaminase catalytic domain {Escherichia c	99.77
d1ynya2		332	D-hydantoinase {Bacillus sp. AR9 [TaxId: 301298]}	99.76
d1nfga2		330	D-hydantoinase {Burkholderia pickettii [TaxId: 329	99.76
d2fvka2		384	Dihydropyrimidine amidohydrolase Pyd2 {Yeast (Sacc	99.73
d1kcxa2		334	Dihydropyrimidinase related protein-1 {Mouse (Mus	99.71
d2ftwa2		334	Dihydropyrimidine amidohydrolase Pyd2 {Dictyosteli	99.71
d2paja2		336	Hypothetical protein GOS_1943094 {Environmental sa	99.7
d1gkra2		325	L-hydantoinase {Arthrobacter aurescens [TaxId: 436	99.68
d1xrta2		310	Two-domain dihydroorotase {Aquifex aeolicus [TaxId	99.62
d2imra2		308	Hypothetical protein DR0824 {Deinococcus radiodura	99.52
d2eg6a1		343	Dihydroorotase {Escherichia coli [TaxId: 562]}	99.51
d2bb0a2		300	Imidazolonepropionase {Bacillus subtilis [TaxId: 1	99.46
d2bb0a1		113	Imidazolonepropionase {Bacillus subtilis [TaxId: 1	99.45
d2q09a2		301	Probable 4-imidazolone-5-propanoate amidohydrolase	99.43
d2puza2		301	Imidazolonepropionase {Agrobacterium tumefaciens [	99.38
d2qs8a2		310	Xaa-Pro dipeptidase {Alteromonas macleodii [TaxId:	99.35
d2p9ba2		324	Uncharacterized protein BL1453 {Bifidobacterium lo	99.31
d2r8ca2		311	Uncharacterized protein EAJ56179 {Unidentified org	99.28
d3be7a2		303	Zn-dependent arginine carboxypeptidase {Unidentifi	99.24
d2ooda2		325	Guanine deaminase {Bradyrhizobium japonicum [TaxId	99.19
d1i0da_		331	Phosphotriesterase (parathion hydrolase, PTE) {Pse	99.11
d3be7a1		95	Zn-dependent arginine carboxypeptidase {Unidentifi	99.0
d4ubpc2		390	alpha-subunit of urease, catalytic domain {Bacillu	98.85
d1e9yb2		389	alpha-subunit of urease, catalytic domain {Helicob	98.83
d1a4ma_		349	Adenosine deaminase (ADA) {Mouse (Mus musculus) [T	98.59
d2i9ua1		109	Guanine deaminase {Clostridium acetobutylicum [Tax	98.59
d1p1ma1		123	Hypothetical protein TM0936 {Thermotoga maritima [	98.5
d2paja1		139	Hypothetical protein GOS_1943094 {Environmental sa	98.49
d2icsa2		267	Putative adenine deaminase EF0837 {Enterococcus fa	98.49
d2amxa1		357	Adenosine deaminase (ADA) {Plasmodium yoelii [TaxI	98.48
d2puza1		103	Imidazolonepropionase {Agrobacterium tumefaciens [	98.4
d1bf6a_		291	Phosphotriesterase homology protein {Escherichia c	98.14
d1m7ja2		61	N-acyl-D-aminoacid amidohydrolase {Alcaligenes fae	98.05
d2q09a1		103	Probable 4-imidazolone-5-propanoate amidohydrolase	98.04
d1onwa2		284	Isoaspartyl dipeptidase, catalytic domain {Escheri	97.92
d2vhla2		301	N-acetylglucosamine-6-phosphate deacetylase, NagA,	97.84
d1yrra2		297	N-acetylglucosamine-6-phosphate deacetylase, NagA,	97.8
d1ejxc2		385	alpha-subunit of urease, catalytic domain {Klebsie	97.73
d1xrta1		112	Two-domain dihydroorotase {Aquifex aeolicus [TaxId	97.72
d2ooda1		140	Guanine deaminase {Bradyrhizobium japonicum [TaxId	97.47
d1xwya1		260	Deoxyribonuclease TatD (MttC) {Escherichia coli [T	97.36
d1kcxa1		142	Dihydropyrimidinase related protein-1 {Mouse (Mus	97.23
d1yixa1		265	Putative deoxyribonuclease YcfH {Escherichia coli	97.17
d2ftwa1		150	Dihydropyrimidine amidohydrolase Pyd2 {Dictyosteli	97.07
d1zzma1		259	Putative deoxyribonuclease YjjV {Escherichia coli	96.89
d2uz9a1		131	Guanine deaminase {Human (Homo sapiens) [TaxId: 96	96.78
d1gkra1		126	L-hydantoinase {Arthrobacter aurescens [TaxId: 436	96.73
d1m7ja3		358	N-acyl-D-aminoacid amidohydrolase, catalytic domai	96.24
d1o12a2		288	N-acetylglucosamine-6-phosphate deacetylase, NagA,	96.1
d1j6oa_		260	Hypothetical protein TM0667 {Thermotoga maritima [	96.04
d1o12a1		76	N-acetylglucosamine-6-phosphate deacetylase, NagA	95.11
d2dvta1		325	Thermophilic reversible gamma-resorcylate decarbox	94.87
d2qs8a1		96	Xaa-Pro dipeptidase {Alteromonas macleodii [TaxId:	94.17
d2icsa1		101	Putative adenine deaminase EF0837 {Enterococcus fa	94.01
d2a3la1		628	AMP deaminase (AMPD), catalytic domain {Thale cres	92.82
d2f6ka1		306	Putative amidohydrolase LP2961 {Lactobacillus plan	91.35
d1v77a_		202	Ribonuclease P protein component 3, Rnp3 {Pyrococc	88.73
d1k1da1		128	D-hydantoinase {Bacillus stearothermophilus [TaxId	87.55
d1nfga1		127	D-hydantoinase {Burkholderia pickettii [TaxId: 329	87.46
d1gkpa1		123	D-hydantoinase {Thermus sp. [TaxId: 275]}	85.14
d2hbva1		331	2-amino-3-carboxymuconate 6-semialdehyde decarboxy	82.06

>d1gkpa2 c.1.9.6 (A:55-389) D-hydantoinase {Thermus sp. [TaxId: 275]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase), catalytic domain
domain: D-hydantoinase
species: Thermus sp. [TaxId: 275]

Probab=99.81  E-value=2.9e-20  Score=177.38  Aligned_cols=268  Identities=14%  Similarity=0.084  Sum_probs=159.2

Q ss_pred             HHHHHHHHHHHHhcCcceeEeCccCCCCCccccchHHHHHHHHHHHhcCCCeeEEEEccCCcc--hhhHHHHHHhcCCcC
Q 013175          115 REALLRASNLALSRGVTTVVDFGRYYPGESVQLSWEDFADVYQWASYSEKMKIRVCLFFPLET--WSSLADLINKTGHVL  192 (448)
Q Consensus       115 ~~~~~~~~~~~~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~irv~~~~~~~~--~~~~~~~~~~~~~~~  192 (448)
                      ++++.+++++|+++|||||.||+++.|..+.    .+.++..+.. .+....+++.++.....  .....++.....   
T Consensus        18 ked~~sgs~AAa~GGvTtv~dmpn~~p~~~~----~~~~~~~~~~-a~~~~~~d~~~~~~~~~~~~~~~~el~~l~~---   89 (335)
T d1gkpa2          18 KDTHETGSKAALMGGTTTYIEMCCPSRNDDA----LEGYQLWKSK-AEGNSYCDYTFHMAVSKFDEKTEGQLREIVA---   89 (335)
T ss_dssp             SCCHHHHHHHHHHTTEEEEEEEECCCTTSCH----HHHHHHHHHH-HTTTCSSEEEEEEECCCCCTTHHHHHHHHHH---
T ss_pred             ccHHHHHHHHHHhCCCeEEEECCCCCCCCCh----HHHHHHHHHH-HhcCCccceeeEEEEeccccccHHHHHHHHh---
Confidence            4678999999999999999999875544332    1222332222 24456677776644322  122222222111   


Q ss_pred             CCCeeeCceEEEecCCcCCCCccccCCcCCCCCCCcccCCCHHHHHHHHHHHHHCCCcEEEEecchHHHHH---------
Q 013175          193 SDWVYLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRANDL---------  263 (448)
Q Consensus       193 ~~~~~~~g~K~f~DG~~~~~ta~~~~py~~~~~~~g~~~~~~~~l~~~~~~a~~~g~~v~iHa~gd~a~~~---------  263 (448)
                         ..+.++|+|...                   .+.+..++..+.++++.+.+.|..+.+|++...-...         
T Consensus        90 ---~G~~~~k~~~~~-------------------~~~~~~d~~~l~~~~~~~~~~~~~v~~h~ed~~l~~~~~~~~~~~~  147 (335)
T d1gkpa2          90 ---DGISSFKIFLSY-------------------KNFFGVDDGEMYQTLRLAKELGVIVTAHCENAELVGRLQQKLLSEG  147 (335)
T ss_dssp             ---TTCCEEEEEECS-------------------TTTTBCCHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHTT
T ss_pred             ---hhcccccccccc-------------------CCCccCCHHHHHHHHHHhhhcCCEEEEcCCcHHHHHHHHhhhhccc
Confidence               125678888632                   1334568899999999999999999999986432211         


Q ss_pred             ---------------HHHHHHHhHHhcCCCCCCCeEEecccCCh-hhHHHHHhCC--cEEeeccccccCchhHHHHhcCH
Q 013175          264 ---------------VLDMYKSVVVTTGKRDQRFRIEHAQHLAS-GTAARFGDQG--IVASMQPQHLLDDADSARKKLGV  325 (448)
Q Consensus       264 ---------------~l~a~~~~~~~~~~~~~r~~i~H~~~~~~-~~i~~~~~~g--v~~~~~P~~~~~~~~~~~~~~g~  325 (448)
                                     ...++.+........+.+.+|.|++.... +.+..+++.|  +++++||+|++++.+.+. +.|.
T Consensus       148 ~~~~~~~~~~~p~~~E~~av~r~~~la~~~~~~~hi~HiSt~~~l~~i~~ak~~g~~it~e~~~~hl~l~~~~~~-~~~~  226 (335)
T d1gkpa2         148 KTGPEWHEPSRPEAVEAEGTARFATFLETTGATGYVVHLSCKPALDAAMAAKARGVPIYIESVIPHFLLDKTYAE-RGGV  226 (335)
T ss_dssp             CCSGGGTTTTSCHHHHHHHHHHHHHHHHHHTCEEEECSCCSHHHHHHHHHHHHTTCCEEEEEEHHHHHCCGGGGG-SCHH
T ss_pred             ccCccccccchhhhhHHHHHHHHHHHHHHhCcccchhhhhhhhhhhhhhhhhhcCceEEeecccchhhcCHHHHh-cCCc
Confidence                           01112222111112346889999886543 4455555555  788899999877654321 1121


Q ss_pred             h--hhhhhhhhH---------HHHHHcCCceeecCCC-CCCC------CCHHHHHHHHHcCCCCCCCC---CCCCCCCCC
Q 013175          326 D--RAERESYLF---------QSLLANNALLALGSDW-PVAD------INPLCAIRTAMKRIPPGWDN---AWIPSERIS  384 (448)
Q Consensus       326 ~--r~~~~~~~~---------~~~~~~Gv~v~~gSD~-p~~~------~~p~~~~~~a~~r~~~~~~~---~~~~~~~ls  384 (448)
                      .  +. +.+||+         .+.+..|.+.+++||+ |.+.      ..+|...+.++.........   ......+||
T Consensus       227 ~~~~~-k~~PPlRs~~d~~~L~~al~~G~id~i~SDHaP~~~e~K~~~~~~~~~~~~G~~gle~~lplll~~~V~~g~ls  305 (335)
T d1gkpa2         227 EAMKY-IMSPPLRDKRNQKVLWDALAQGFIDTVGTDHCPFDTEQKLLGKEAFTAIPNGIPAIEDRVNLLYTYGVSRGRLD  305 (335)
T ss_dssp             HHHTT-CCSSCCCCTHHHHHHHHHHHTTSSCEEECCBCCCCHHHHGGGSSCGGGSCCCBCCTTTHHHHHHHHHTTSSSCC
T ss_pred             hhcce-ecccCCCCHHHHHHHHHHHhcCCccEEEecCCCCCHHHhccCCCChhhCCCChhHHHHHHHHHHHHHHHcCCCC
Confidence            1  12 344554         4577889999999996 3321      01111111111100000000   012355799


Q ss_pred             HHHHHHHHhHHHHHHcccCCCcccccCCCc
Q 013175          385 LTDALIAHTLSAARACFLENDVGSLSPGKI  414 (448)
Q Consensus       385 ~~~al~~~T~n~A~~~g~~~~~Gsi~~Gk~  414 (448)
                      +++++++++.|||+++|+.++||+|++|++
T Consensus       306 l~~~v~~~S~nPAri~Gl~~~KG~i~~G~D  335 (335)
T d1gkpa2         306 IHRFVDAASTKAAKLFGLFPRKGTIAVGSD  335 (335)
T ss_dssp             HHHHHHHHTHHHHHHTTCTTTSSSCCTTSB
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCCeecCCCC
Confidence            999999999999999999888999999985

PyMOL of d1gkpa2

>d1p1ma2 c.1.9.9 (A:50-330) Hypothetical protein TM0936, probable catalytic domain {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d2uz9a2 c.1.9.9 (A:76-388) Guanine deaminase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2i9ua2 c.1.9.9 (A:67-376) Guanine deaminase {Clostridium acetobutylicum [TaxId: 1488]}	Back information, alignment and structure

>d1ra0a2 c.1.9.5 (A:56-375) Cytosine deaminase catalytic domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1ynya2 c.1.9.6 (A:53-384) D-hydantoinase {Bacillus sp. AR9 [TaxId: 301298]}	Back information, alignment and structure

>d1nfga2 c.1.9.6 (A:52-381) D-hydantoinase {Burkholderia pickettii [TaxId: 329]}	Back information, alignment and structure

>d2fvka2 c.1.9.6 (A:57-440) Dihydropyrimidine amidohydrolase Pyd2 {Yeast (Saccharomyces kluyveri) [TaxId: 4934]}	Back information, alignment and structure

>d1kcxa2 c.1.9.6 (A:67-400) Dihydropyrimidinase related protein-1 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d2ftwa2 c.1.9.6 (A:60-393) Dihydropyrimidine amidohydrolase Pyd2 {Dictyostelium discoideum [TaxId: 44689]}	Back information, alignment and structure

>d2paja2 c.1.9.9 (A:70-405) Hypothetical protein GOS_1943094 {Environmental samples}	Back information, alignment and structure

>d1gkra2 c.1.9.6 (A:55-379) L-hydantoinase {Arthrobacter aurescens [TaxId: 43663]}	Back information, alignment and structure

>d1xrta2 c.1.9.6 (A:56-365) Two-domain dihydroorotase {Aquifex aeolicus [TaxId: 63363]}	Back information, alignment and structure

>d2imra2 c.1.9.16 (A:91-398) Hypothetical protein DR0824 {Deinococcus radiodurans [TaxId: 1299]}	Back information, alignment and structure

>d2eg6a1 c.1.9.4 (A:4-346) Dihydroorotase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2bb0a2 c.1.9.17 (A:74-373) Imidazolonepropionase {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d2bb0a1 b.92.1.10 (A:3-73,A:374-415) Imidazolonepropionase {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d2q09a2 c.1.9.17 (A:66-366) Probable 4-imidazolone-5-propanoate amidohydrolase GOS_1928421 {Environmental samples}	Back information, alignment and structure

>d2puza2 c.1.9.17 (A:80-380) Imidazolonepropionase {Agrobacterium tumefaciens [TaxId: 358]}	Back information, alignment and structure

>d2qs8a2 c.1.9.18 (A:64-373) Xaa-Pro dipeptidase {Alteromonas macleodii [TaxId: 28108]}	Back information, alignment and structure

>d2p9ba2 c.1.9.17 (A:71-394) Uncharacterized protein BL1453 {Bifidobacterium longum [TaxId: 216816]}	Back information, alignment and structure

>d2r8ca2 c.1.9.18 (A:58-368) Uncharacterized protein EAJ56179 {Unidentified organism [TaxId: 32644]}	Back information, alignment and structure

>d3be7a2 c.1.9.18 (A:57-359) Zn-dependent arginine carboxypeptidase {Unidentified organism [TaxId: 32644]}	Back information, alignment and structure

>d2ooda2 c.1.9.9 (A:73-397) Guanine deaminase {Bradyrhizobium japonicum [TaxId: 375]}	Back information, alignment and structure

>d1i0da_ c.1.9.3 (A:) Phosphotriesterase (parathion hydrolase, PTE) {Pseudomonas diminuta [TaxId: 293]}	Back information, alignment and structure

>d3be7a1 b.92.1.9 (A:3-56,A:360-400) Zn-dependent arginine carboxypeptidase {Unidentified organism [TaxId: 32644]}	Back information, alignment and structure

>d4ubpc2 c.1.9.2 (C:132-434,C:484-570) alpha-subunit of urease, catalytic domain {Bacillus pasteurii [TaxId: 1474]}	Back information, alignment and structure

>d1e9yb2 c.1.9.2 (B:132-431,B:481-569) alpha-subunit of urease, catalytic domain {Helicobacter pylori [TaxId: 210]}	Back information, alignment and structure

>d1a4ma_ c.1.9.1 (A:) Adenosine deaminase (ADA) {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d2i9ua1 b.92.1.4 (A:9-66,A:377-427) Guanine deaminase {Clostridium acetobutylicum [TaxId: 1488]}	Back information, alignment and structure

>d1p1ma1 b.92.1.4 (A:1-49,A:331-404) Hypothetical protein TM0936 {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d2paja1 b.92.1.4 (A:10-69,A:406-484) Hypothetical protein GOS_1943094 {Environmental samples}	Back information, alignment and structure

>d2icsa2 c.1.9.14 (A:55-321) Putative adenine deaminase EF0837 {Enterococcus faecalis [TaxId: 1351]}	Back information, alignment and structure

>d2amxa1 c.1.9.1 (A:20-376) Adenosine deaminase (ADA) {Plasmodium yoelii [TaxId: 5861]}	Back information, alignment and structure

>d2puza1 b.92.1.10 (A:17-79,A:381-420) Imidazolonepropionase {Agrobacterium tumefaciens [TaxId: 358]}	Back information, alignment and structure

>d1bf6a_ c.1.9.3 (A:) Phosphotriesterase homology protein {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1m7ja2 b.92.1.6 (A:420-480) N-acyl-D-aminoacid amidohydrolase {Alcaligenes faecalis [TaxId: 511]}	Back information, alignment and structure

>d2q09a1 b.92.1.10 (A:4-65,A:367-407) Probable 4-imidazolone-5-propanoate amidohydrolase GOS_1928421 {Environmental samples}	Back information, alignment and structure

>d1onwa2 c.1.9.13 (A:63-346) Isoaspartyl dipeptidase, catalytic domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1yrra2 c.1.9.10 (A:54-350) N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1ejxc2 c.1.9.2 (C:1130-1422,C:1476-1567) alpha-subunit of urease, catalytic domain {Klebsiella aerogenes [TaxId: 28451]}	Back information, alignment and structure

>d1xrta1 b.92.1.3 (A:1-55,A:366-422) Two-domain dihydroorotase {Aquifex aeolicus [TaxId: 63363]}	Back information, alignment and structure

>d2ooda1 b.92.1.4 (A:3-72,A:398-467) Guanine deaminase {Bradyrhizobium japonicum [TaxId: 375]}	Back information, alignment and structure

>d1xwya1 c.1.9.12 (A:1-260) Deoxyribonuclease TatD (MttC) {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1kcxa1 b.92.1.3 (A:15-66,A:401-490) Dihydropyrimidinase related protein-1 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1yixa1 c.1.9.12 (A:1-265) Putative deoxyribonuclease YcfH {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2ftwa1 b.92.1.3 (A:7-59,A:394-490) Dihydropyrimidine amidohydrolase Pyd2 {Dictyostelium discoideum [TaxId: 44689]}	Back information, alignment and structure

>d1zzma1 c.1.9.12 (A:1-259) Putative deoxyribonuclease YjjV {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2uz9a1 b.92.1.4 (A:8-75,A:389-451) Guanine deaminase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1gkra1 b.92.1.3 (A:1-54,A:380-451) L-hydantoinase {Arthrobacter aurescens [TaxId: 43663]}	Back information, alignment and structure

>d1m7ja3 c.1.9.11 (A:62-419) N-acyl-D-aminoacid amidohydrolase, catalytic domain {Alcaligenes faecalis [TaxId: 511]}	Back information, alignment and structure

>d1o12a2 c.1.9.10 (A:44-331) N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1j6oa_ c.1.9.12 (A:) Hypothetical protein TM0667 {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1o12a1 b.92.1.5 (A:1-43,A:332-364) N-acetylglucosamine-6-phosphate deacetylase, NagA {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d2dvta1 c.1.9.15 (A:1-325) Thermophilic reversible gamma-resorcylate decarboxylase {Rhizobium sp. MTP-10005 [TaxId: 267998]}	Back information, alignment and structure

>d2qs8a1 b.92.1.9 (A:7-63,A:374-412) Xaa-Pro dipeptidase {Alteromonas macleodii [TaxId: 28108]}	Back information, alignment and structure

>d2icsa1 b.92.1.8 (A:4-54,A:322-371) Putative adenine deaminase EF0837 {Enterococcus faecalis [TaxId: 1351]}	Back information, alignment and structure

>d2a3la1 c.1.9.1 (A:212-839) AMP deaminase (AMPD), catalytic domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

>d2f6ka1 c.1.9.15 (A:2-307) Putative amidohydrolase LP2961 {Lactobacillus plantarum [TaxId: 1590]}	Back information, alignment and structure

>d1v77a_ c.6.3.2 (A:) Ribonuclease P protein component 3, Rnp3 {Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure

>d1k1da1 b.92.1.3 (A:1-52,A:385-460) D-hydantoinase {Bacillus stearothermophilus [TaxId: 1422]}	Back information, alignment and structure

>d1nfga1 b.92.1.3 (A:1-51,A:382-457) D-hydantoinase {Burkholderia pickettii [TaxId: 329]}	Back information, alignment and structure

>d1gkpa1 b.92.1.3 (A:2-54,A:390-459) D-hydantoinase {Thermus sp. [TaxId: 275]}	Back information, alignment and structure

>d2hbva1 c.1.9.15 (A:3-333) 2-amino-3-carboxymuconate 6-semialdehyde decarboxylase NbaD {Pseudomonas fluorescens [TaxId: 294]}	Back information, alignment and structure