Citrus Sinensis ID: 013183

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------45
Protein Sequence
MSRFSWLRLSRRQLLSSTAVESPINKSHCLQKAATLPQSILHKRGLYYCSSVTGTLADFGTTGMFLARRCIHATGSCYSSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFEDETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGKVQVKIPKGVQPGQLLVLRGKGLAKNGLFLDHGDQYVRFRVNFPTWQRIVERVRAPKFMLELSLFLLILLFLSKTMS
Secondary Structure (PSIPRED)
ccccccEEcccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccEEEccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEHHHHHccccEEEEEccccccccccccccccccccccccccccccEEEEccccccccccccccEEcccccccccccEEEEEEEEEEEEcccccccccEEEEcccccccccccccccEEEEEEEEcccccEEccccEEEEEEccHHHHcccccEEEEccccEEEEEcccccccccEEEEccccccccccccccccEEEEEEEEccccccHHHHHHHHHHHHHHcHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccEHHHHcHHHHHccccccccccccHHHHHHHcccHHHHHccccEEEccccccHHcccHHHHHHHHHHHHcccccccccccHHHHHcccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEHHHHHcccEEEEEEccccEcccccccccccccccccccccccccEEEEEEEEEcccccccccEEEcccccccccccEEEEEEEEEEEEccccccccEEEEcccccccccccccccEEEEEEEEccccEEEccccEEEEEEEcHHHHHccccEEEEccccEEEEEEccccccccEEEEccccccccccccccccEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
msrfswlrLSRRQLLSstavespinkshclqkaatlpqsilhkrglyycssvtgtladfgttGMFLARRCIhatgscysskrdpyellgvpenasQDEIKKAFHMLAKqyhpdanknnpsaKRKFQEIRDAYETLRDSEKraqydrrrsrgsenekysagdaegfryagdaeGFRYAYQTHFSDSFHKIFSEIFedetshfapdIQVELVLSFAEAAKgctkhvsfdafvpcdschgrgfpadaktkicstcrgigrvtippftstcstckglgriikdhcmtckgsgvvdgvkevkvtipagvdsgdtirvpeagnaggrgrqhgNLFIKlkvaddpifsrdgadvyvdsniSFTQAilggkvdvptlsgkvqvkipkgvqpgqllVLRGkglaknglfldhgdqyVRFRVNFPTWQRIVERVRAPKFMLELSLFLLILLFLSKTMS
Flexible Loop (DISEMBL)
msrfswlrlsrRQLLsstavespinkshclqKAATLPQSILHKRGLYYCSSVTGTLADFGTTGMFLARRCIHATGSCYSSKRDPYELLGVPENASQDEIKKAFHMLAKQyhpdanknnpsakrKFQEIRDAYetlrdsekraqydrrrsrgsenekysagdaegFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFEDETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCrgigrvtippftstcSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTipagvdsgdtirvpeagnaggrgrqhgNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGKVqvkipkgvqpgqLLVLRGKGLAKNGLFLDHGDQYVRFRVNFPTWQRIVERVRAPKFMLELSLFLLILLFLSKTMS
Low Complexity Region (SEG)
MsrfswlrlsrrqllssTAVESPINKSHCLQKAATLPQSILHKRGLYYCSSVTGTLADFGTTGMFLARRCIHATGSCYSSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFEDETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGKVQVKIPKGVQPGQLLVLRGKGLAKNGLFLDHGDQYVRFRVNFPTWQRIVERVRAPKFMlelslfllillflsKTMS
Disordered region (IsUnstruct)
*************************KSHCLQKAATLPQSILHKRGLYYCSSVTGTLADFGTTGMFLARRCIHATGSCYSSKRDPYELLG**************************************************************************GFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFEDETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDTIRV*********GRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGKVQVKIPKGVQPGQLLVLRGKGLAKNGLFLDHGDQYVRFRVNFPTWQRIVERVRAPKFMLELSLFLLILLFL*****
Disordered Region (DISOPRED)
*SRFS**RLS*******************************************************************YSSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSEN*K******EGFRYAGDAEGFRYAYQTHFSDSF*********************ELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDTIR***********RQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGKVQVKIPKGVQPGQLLVLRGKGLAKN**FLDHGDQYVRFRVNFPTWQRIVERVRAPKFMLELSLFLLILLFLSKTM*
Disordered Region (DISEMBL)
********LSRRQLLSSTAVESPINKSHCLQKAATLPQSILHKRGLYYCSSVTGTLADFGTTGMFLARRCIHATGSCYSSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSE******************SAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFEDETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGKVQVKIPKGVQPGQLLVLRGKGLAKNGLFLDHGDQYVRFRVNFPTWQRIVERVRAPKFMLELSLFLLILLFLSKTMS
Disordered Region (DISPRO)
*****W******QLLS*TAVESPINKSHCLQKAATLPQSILHKRGLYYCSSVTGTLADFGTTGMFLARRCIHATGSCYSSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFEDETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRG****AKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGKVQVKIPKGVQPGQLLVLRGKGLAKNGLFLDHGDQYVRFRVNFPTWQRIVERVRAPKFMLELSLFLLILLFLSKT**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSRFSWLRLSRRQLLSSTAVESPINKSHCLQKAATLPQSILHKRGLYYCSSVTGTLADFGTTGMFLARRCIHATGSCYSSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFEDETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGKVQVKIPKGVQPGQLLVLRGKGLAKNGLFLDHGDQYVRFRVNFPTWQRIVERVRAPKFMLELSLFLLILLFLSKTMS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	448	2.2.26 [Sep-21-2011]
Q38813	408	Chaperone protein dnaJ 1,	yes	no	0.776	0.852	0.628	1e-130
Q8K9Y9	378	Chaperone protein DnaJ OS	yes	no	0.723	0.857	0.379	1e-60
Q6F6R1	368	Chaperone protein DnaJ OS	yes	no	0.669	0.815	0.407	5e-60
P0A1G7	379	Chaperone protein DnaJ OS	yes	no	0.678	0.802	0.393	2e-59
P0A1G8	379	Chaperone protein DnaJ OS	N/A	no	0.678	0.802	0.393	2e-59
B4TVZ6	379	Chaperone protein DnaJ OS	yes	no	0.678	0.802	0.393	2e-59
C0Q4F4	379	Chaperone protein DnaJ OS	yes	no	0.678	0.802	0.393	2e-59
A9MXI3	379	Chaperone protein DnaJ OS	yes	no	0.678	0.802	0.393	2e-59
B4T6D7	379	Chaperone protein DnaJ OS	yes	no	0.678	0.802	0.393	2e-59
B4TIB5	379	Chaperone protein DnaJ OS	yes	no	0.678	0.802	0.393	2e-59

>sp|Q38813|DNAJ1_ARATH Chaperone protein dnaJ 1, mitochondrial OS=Arabidopsis thaliana GN=ATJ1 PE=2 SV=2

 Score =  463 bits (1192), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 227/361 (62%), Positives = 279/361 (77%), Gaps = 13/361 (3%)

Query: 66  LARRCIHATGSCYSSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKF 125
           L  R IHATG   SS R+ Y++LGV   A+++EIKK+FH LAK++HPD N+NNPSAKRKF
Sbjct: 31  LFERYIHATGINNSSARNYYDVLGVSPKATREEIKKSFHELAKKFHPDTNRNNPSAKRKF 90

Query: 126 QEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDS 185
           QEIR+AYETL +SE+R +YD+ + R S+   Y   D       GD+E FR AYQ++FSD+
Sbjct: 91  QEIREAYETLGNSERREEYDKLQYRNSD---YVNNDG------GDSERFRRAYQSNFSDT 141

Query: 186 FHKIFSEIFEDETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAK 245
           FHKIFSEIFE+  +   PDI+VEL LS +EAA+GCTK +SFDA+V CDSC G G P+DA 
Sbjct: 142 FHKIFSEIFEN--NQIKPDIRVELSLSLSEAAEGCTKRLSFDAYVFCDSCDGLGHPSDAA 199

Query: 246 TKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVD 305
             IC TCRG+GRVTIPPFT++C TCKG G IIK++CM+C+GSG+V+G K  ++ IP GV+
Sbjct: 200 MSICPTCRGVGRVTIPPFTASCQTCKGTGHIIKEYCMSCRGSGIVEGTKTAELVIPGGVE 259

Query: 306 SGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVD 365
           S  TI +  AGN   R  Q GNL+IKLKVA+D  F+RDG+D+YVD+NISFTQAILGGKV 
Sbjct: 260 SEATITIVGAGNVSSRTSQPGNLYIKLKVANDSTFTRDGSDIYVDANISFTQAILGGKVV 319

Query: 366 VPTLSGKVQVKIPKGVQPGQLLVLRGKGLAKNGLFLDHGDQYVRFRVNFPTWQRIVERVR 425
           VPTLSGK+Q+ IPKG QP QLLVLRGKGL K G F+DHGDQYVRFRVNFPT   + ER R
Sbjct: 320 VPTLSGKIQLDIPKGTQPDQLLVLRGKGLPKQGFFVDHGDQYVRFRVNFPT--EVNERQR 377

Query: 426 A 426
           A
Sbjct: 378 A 378

Have a continuous role in plant development probably in the structural organization of compartments.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8K9Y9|DNAJ_BUCAP Chaperone protein DnaJ OS=Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) GN=dnaJ PE=3 SV=1

 Score =  234 bits (597), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 130/343 (37%), Positives = 194/343 (56%), Gaps = 19/343 (5%)

Query: 80  SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSE 139
           +K+D Y++LG+P++A + EIKKA+  LA +YHPD N+ + +A+ KF+EI++AYE L + E
Sbjct: 2   AKKDYYQILGIPKSAEEREIKKAYKRLAMKYHPDRNQGDKNAENKFKEIKEAYEILINEE 61

Query: 140 KRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIF---ED 196
           KR  YD+      EN     G  +   Y+       +   T F D F  +F +IF    +
Sbjct: 62  KRTAYDQYGHAAFEN-----GYNQNNTYS------TFTSSTDFGDIFGDVFGDIFGGSRN 110

Query: 197 ETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGIG 256
           +      D+   + +S  EA KG TK +    F  C +C+G G     K   CSTC G G
Sbjct: 111 QRVKKGADLCYNMEISLEEAVKGTTKEIRIPTFQKCKTCYGMGTSTGTKPNGCSTCHGKG 170

Query: 257 RVTIPP--FT--STCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDTIRV 312
           ++ I    FT   +C TC G+G +IK+ C  C+G G +   K + V IP G+D+ D IR+
Sbjct: 171 QIHIRKGFFTVQQSCPTCNGIGTVIKNPCRMCRGQGRIKTNKTLSVKIPPGIDTNDKIRL 230

Query: 313 PEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGK 372
            + G AG  G Q G+L++++KV   PIF R+  ++Y +  I+FT A LGG+++VPTL G+
Sbjct: 231 SKEGEAGTNGAQPGDLYVQMKVNKHPIFEREENNLYCEVPINFTMAALGGEIEVPTLDGR 290

Query: 373 VQVKIPKGVQPGQLLVLRGKGLAKNGLFLDHGDQYVRFRVNFP 415
           V +KIP   Q G+L  +RGKG+ K+      GD   R  V  P
Sbjct: 291 VNLKIPSETQSGKLFRIRGKGV-KSVQSRSRGDLLCRVVVETP 332

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) (taxid: 198804)

>sp|Q6F6R1|DNAJ_ACIAD Chaperone protein DnaJ OS=Acinetobacter sp. (strain ADP1) GN=dnaJ PE=3 SV=1

 Score =  232 bits (591), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 132/324 (40%), Positives = 186/324 (57%), Gaps = 24/324 (7%)

Query: 80  SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSE 139
           +KRD YE+LGV + AS DEIKKA+  LA +YHPD N +N  A+ KF+E  +AYE L DSE
Sbjct: 2   AKRDYYEVLGVSKTASDDEIKKAYRKLAMKYHPDRNPDNAEAEDKFKEASEAYEVLSDSE 61

Query: 140 KRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIF----- 194
           KR+ YDR                  F   G      ++ +  FS  F  IF   F     
Sbjct: 62  KRSMYDRM-------------GHNAFEGGGGGGFGGFSAEDIFS-QFGDIFGGAFGGGGR 107

Query: 195 EDETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRG 254
           + +      D++  + LS  EA +G  K ++F A  PC+ C G+G       + C TC G
Sbjct: 108 QQQRQRRGSDLRYVMELSLEEAVRGVKKTITFTAPAPCEVCDGKGSKNPNDVETCRTCHG 167

Query: 255 IGRVTIP----PFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDTI 310
            G+V +         TC TC+G G+IIK+ C +C GSGV D  + ++VTIPAGVD+GD +
Sbjct: 168 TGQVRMQQGFFSVQQTCGTCRGQGKIIKNPCQSCHGSGVADRQQTLEVTIPAGVDNGDRV 227

Query: 311 RVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLS 370
           R+   G A  R  Q G+L++++ V +  IF RDGAD+Y+D  +S   A LG ++++PTL 
Sbjct: 228 RLSGKGEA-VRDGQAGDLYVEVVVREHEIFQRDGADLYMDVPVSIADAALGKEIEIPTLE 286

Query: 371 GKVQVKIPKGVQPGQLLVLRGKGL 394
           G+V +KIP+G Q G+L  LRGKG+
Sbjct: 287 GRVSLKIPEGTQTGKLFRLRGKGV 310

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Acinetobacter sp. (strain ADP1) (taxid: 62977)

>sp|P0A1G7|DNAJ_SALTY Chaperone protein DnaJ OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=dnaJ PE=3 SV=2

 Score =  230 bits (586), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 127/323 (39%), Positives = 182/323 (56%), Gaps = 19/323 (5%)

Query: 80  SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSE 139
           +KRD YE+LGV + A + EIKKA+  LA +YHPD N+ +  A+ KF+EI++AYE L D++
Sbjct: 2   AKRDYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDAQ 61

Query: 140 KRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFED--- 196
           KRA YD+      E      G   GF    D           FSD F  +F +IF     
Sbjct: 62  KRAAYDQYGHAAFEQGGMGGGFGGGFNGGAD-----------FSDIFGDVFGDIFGGGRG 110

Query: 197 -ETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGI 255
            + +    D++  + L+  EA +G TK +       CD CHG G  A  + + C TC G 
Sbjct: 111 RQRAARGADLRYNMDLTLEEAVRGVTKEIRIPTLEECDVCHGSGAKAGTQPQTCPTCHGS 170

Query: 256 GRVTIP----PFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDTIR 311
           G+V +         TC  C+G G +IKD C  C G G V+  K + V IPAGVD+GD IR
Sbjct: 171 GQVQMRQGFFAVQQTCPHCQGRGTLIKDPCHKCHGHGRVEKSKTLSVKIPAGVDTGDRIR 230

Query: 312 VPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSG 371
           +   G AG  G   G+L+++++V   PIF R+G ++Y +  I+F  A LGG+++VPTL G
Sbjct: 231 LAGEGEAGEHGAPAGDLYVQVQVKQHPIFEREGNNLYCEVPINFAMAALGGEIEVPTLDG 290

Query: 372 KVQVKIPKGVQPGQLLVLRGKGL 394
           +V +K+P   Q G+L  +RGKG+
Sbjct: 291 RVMLKVPSETQTGKLFRMRGKGV 313

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins (By similarity). Necessary for invasion of epithelial cells, secretion of invasion proteins and proliferation within macrophages.

Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (taxid: 99287)

>sp|P0A1G8|DNAJ_SALTI Chaperone protein DnaJ OS=Salmonella typhi GN=dnaJ PE=3 SV=2

 Score =  230 bits (586), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 127/323 (39%), Positives = 182/323 (56%), Gaps = 19/323 (5%)

Query: 80  SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSE 139
           +KRD YE+LGV + A + EIKKA+  LA +YHPD N+ +  A+ KF+EI++AYE L D++
Sbjct: 2   AKRDYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDAQ 61

Query: 140 KRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFED--- 196
           KRA YD+      E      G   GF    D           FSD F  +F +IF     
Sbjct: 62  KRAAYDQYGHAAFEQGGMGGGFGGGFNGGAD-----------FSDIFGDVFGDIFGGGRG 110

Query: 197 -ETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGI 255
            + +    D++  + L+  EA +G TK +       CD CHG G  A  + + C TC G 
Sbjct: 111 RQRAARGADLRYNMDLTLEEAVRGVTKEIRIPTLEECDVCHGSGAKAGTQPQTCPTCHGS 170

Query: 256 GRVTIP----PFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDTIR 311
           G+V +         TC  C+G G +IKD C  C G G V+  K + V IPAGVD+GD IR
Sbjct: 171 GQVQMRQGFFAVQQTCPHCQGRGTLIKDPCHKCHGHGRVEKSKTLSVKIPAGVDTGDRIR 230

Query: 312 VPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSG 371
           +   G AG  G   G+L+++++V   PIF R+G ++Y +  I+F  A LGG+++VPTL G
Sbjct: 231 LAGEGEAGEHGAPAGDLYVQVQVKQHPIFEREGNNLYCEVPINFAMAALGGEIEVPTLDG 290

Query: 372 KVQVKIPKGVQPGQLLVLRGKGL 394
           +V +K+P   Q G+L  +RGKG+
Sbjct: 291 RVMLKVPSETQTGKLFRMRGKGV 313

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Salmonella typhi (taxid: 90370)

>sp|B4TVZ6|DNAJ_SALSV Chaperone protein DnaJ OS=Salmonella schwarzengrund (strain CVM19633) GN=dnaJ PE=3 SV=1

 Score =  230 bits (586), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 127/323 (39%), Positives = 182/323 (56%), Gaps = 19/323 (5%)

Query: 80  SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSE 139
           +KRD YE+LGV + A + EIKKA+  LA +YHPD N+ +  A+ KF+EI++AYE L D++
Sbjct: 2   AKRDYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDAQ 61

Query: 140 KRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFED--- 196
           KRA YD+      E      G   GF    D           FSD F  +F +IF     
Sbjct: 62  KRAAYDQYGHAAFEQGGMGGGFGGGFNGGAD-----------FSDIFGDVFGDIFGGGRG 110

Query: 197 -ETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGI 255
            + +    D++  + L+  EA +G TK +       CD CHG G  A  + + C TC G 
Sbjct: 111 RQRAARGADLRYNMDLTLEEAVRGVTKEIRIPTLEECDVCHGSGAKAGTQPQTCPTCHGS 170

Query: 256 GRVTIP----PFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDTIR 311
           G+V +         TC  C+G G +IKD C  C G G V+  K + V IPAGVD+GD IR
Sbjct: 171 GQVQMRQGFFAVQQTCPHCQGRGTLIKDPCHKCHGHGRVEKSKTLSVKIPAGVDTGDRIR 230

Query: 312 VPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSG 371
           +   G AG  G   G+L+++++V   PIF R+G ++Y +  I+F  A LGG+++VPTL G
Sbjct: 231 LAGEGEAGEHGAPAGDLYVQVQVKQHPIFEREGNNLYCEVPINFAMAALGGEIEVPTLDG 290

Query: 372 KVQVKIPKGVQPGQLLVLRGKGL 394
           +V +K+P   Q G+L  +RGKG+
Sbjct: 291 RVMLKVPSETQTGKLFRMRGKGV 313

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Salmonella schwarzengrund (strain CVM19633) (taxid: 439843)

>sp|C0Q4F4|DNAJ_SALPC Chaperone protein DnaJ OS=Salmonella paratyphi C (strain RKS4594) GN=dnaJ PE=3 SV=1

 Score =  230 bits (586), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 127/323 (39%), Positives = 182/323 (56%), Gaps = 19/323 (5%)

Query: 80  SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSE 139
           +KRD YE+LGV + A + EIKKA+  LA +YHPD N+ +  A+ KF+EI++AYE L D++
Sbjct: 2   AKRDYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDAQ 61

Query: 140 KRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFED--- 196
           KRA YD+      E      G   GF    D           FSD F  +F +IF     
Sbjct: 62  KRAAYDQYGHAAFEQGGMGGGFGGGFNGGAD-----------FSDIFGDVFGDIFGGGRG 110

Query: 197 -ETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGI 255
            + +    D++  + L+  EA +G TK +       CD CHG G  A  + + C TC G 
Sbjct: 111 RQRAARGADLRYNMDLTLEEAVRGVTKEIRIPTLEECDVCHGSGAKAGTQPQTCPTCHGS 170

Query: 256 GRVTIP----PFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDTIR 311
           G+V +         TC  C+G G +IKD C  C G G V+  K + V IPAGVD+GD IR
Sbjct: 171 GQVQMRQGFFAVQQTCPHCQGRGTLIKDPCHKCHGHGRVEKSKTLSVKIPAGVDTGDRIR 230

Query: 312 VPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSG 371
           +   G AG  G   G+L+++++V   PIF R+G ++Y +  I+F  A LGG+++VPTL G
Sbjct: 231 LAGEGEAGEHGAPAGDLYVQVQVKQHPIFEREGNNLYCEVPINFAMAALGGEIEVPTLDG 290

Query: 372 KVQVKIPKGVQPGQLLVLRGKGL 394
           +V +K+P   Q G+L  +RGKG+
Sbjct: 291 RVMLKVPSETQTGKLFRMRGKGV 313

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Salmonella paratyphi C (strain RKS4594) (taxid: 476213)

>sp|A9MXI3|DNAJ_SALPB Chaperone protein DnaJ OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=dnaJ PE=3 SV=1

 Score =  230 bits (586), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 127/323 (39%), Positives = 182/323 (56%), Gaps = 19/323 (5%)

Query: 80  SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSE 139
           +KRD YE+LGV + A + EIKKA+  LA +YHPD N+ +  A+ KF+EI++AYE L D++
Sbjct: 2   AKRDYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDAQ 61

Query: 140 KRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFED--- 196
           KRA YD+      E      G   GF    D           FSD F  +F +IF     
Sbjct: 62  KRAAYDQYGHAAFEQGGMGGGFGGGFNGGAD-----------FSDIFGDVFGDIFGGGRG 110

Query: 197 -ETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGI 255
            + +    D++  + L+  EA +G TK +       CD CHG G  A  + + C TC G 
Sbjct: 111 RQRAARGADLRYNMDLTLEEAVRGVTKEIRIPTLEECDVCHGSGAKAGTQPQTCPTCHGS 170

Query: 256 GRVTIP----PFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDTIR 311
           G+V +         TC  C+G G +IKD C  C G G V+  K + V IPAGVD+GD IR
Sbjct: 171 GQVQMRQGFFAVQQTCPHCQGRGTLIKDPCHKCHGHGRVEKSKTLSVKIPAGVDTGDRIR 230

Query: 312 VPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSG 371
           +   G AG  G   G+L+++++V   PIF R+G ++Y +  I+F  A LGG+++VPTL G
Sbjct: 231 LAGEGEAGEHGAPAGDLYVQVQVKQHPIFEREGNNLYCEVPINFAMAALGGEIEVPTLDG 290

Query: 372 KVQVKIPKGVQPGQLLVLRGKGL 394
           +V +K+P   Q G+L  +RGKG+
Sbjct: 291 RVMLKVPSETQTGKLFRMRGKGV 313

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) (taxid: 1016998)

>sp|B4T6D7|DNAJ_SALNS Chaperone protein DnaJ OS=Salmonella newport (strain SL254) GN=dnaJ PE=3 SV=1

 Score =  230 bits (586), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 127/323 (39%), Positives = 182/323 (56%), Gaps = 19/323 (5%)

Query: 80  SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSE 139
           +KRD YE+LGV + A + EIKKA+  LA +YHPD N+ +  A+ KF+EI++AYE L D++
Sbjct: 2   AKRDYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDAQ 61

Query: 140 KRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFED--- 196
           KRA YD+      E      G   GF    D           FSD F  +F +IF     
Sbjct: 62  KRAAYDQYGHAAFEQGGMGGGFGGGFNGGAD-----------FSDIFGDVFGDIFGGGRG 110

Query: 197 -ETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGI 255
            + +    D++  + L+  EA +G TK +       CD CHG G  A  + + C TC G 
Sbjct: 111 RQRAARGADLRYNMDLTLEEAVRGVTKEIRIPTLEECDVCHGSGAKAGTQPQTCPTCHGS 170

Query: 256 GRVTIP----PFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDTIR 311
           G+V +         TC  C+G G +IKD C  C G G V+  K + V IPAGVD+GD IR
Sbjct: 171 GQVQMRQGFFAVQQTCPHCQGRGTLIKDPCHKCHGHGRVEKSKTLSVKIPAGVDTGDRIR 230

Query: 312 VPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSG 371
           +   G AG  G   G+L+++++V   PIF R+G ++Y +  I+F  A LGG+++VPTL G
Sbjct: 231 LAGEGEAGEHGAPAGDLYVQVQVKQHPIFEREGNNLYCEVPINFAMAALGGEIEVPTLDG 290

Query: 372 KVQVKIPKGVQPGQLLVLRGKGL 394
           +V +K+P   Q G+L  +RGKG+
Sbjct: 291 RVMLKVPSETQTGKLFRMRGKGV 313

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Salmonella newport (strain SL254) (taxid: 423368)

>sp|B4TIB5|DNAJ_SALHS Chaperone protein DnaJ OS=Salmonella heidelberg (strain SL476) GN=dnaJ PE=3 SV=1

 Score =  230 bits (586), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 127/323 (39%), Positives = 182/323 (56%), Gaps = 19/323 (5%)

Query: 80  SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSE 139
           +KRD YE+LGV + A + EIKKA+  LA +YHPD N+ +  A+ KF+EI++AYE L D++
Sbjct: 2   AKRDYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDAQ 61

Query: 140 KRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFED--- 196
           KRA YD+      E      G   GF    D           FSD F  +F +IF     
Sbjct: 62  KRAAYDQYGHAAFEQGGMGGGFGGGFNGGAD-----------FSDIFGDVFGDIFGGGRG 110

Query: 197 -ETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGI 255
            + +    D++  + L+  EA +G TK +       CD CHG G  A  + + C TC G 
Sbjct: 111 RQRAARGADLRYNMDLTLEEAVRGVTKEIRIPTLEECDVCHGSGAKAGTQPQTCPTCHGS 170

Query: 256 GRVTIP----PFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDTIR 311
           G+V +         TC  C+G G +IKD C  C G G V+  K + V IPAGVD+GD IR
Sbjct: 171 GQVQMRQGFFAVQQTCPHCQGRGTLIKDPCHKCHGHGRVEKSKTLSVKIPAGVDTGDRIR 230

Query: 312 VPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSG 371
           +   G AG  G   G+L+++++V   PIF R+G ++Y +  I+F  A LGG+++VPTL G
Sbjct: 231 LAGEGEAGEHGAPAGDLYVQVQVKQHPIFEREGNNLYCEVPINFAMAALGGEIEVPTLDG 290

Query: 372 KVQVKIPKGVQPGQLLVLRGKGL 394
           +V +K+P   Q G+L  +RGKG+
Sbjct: 291 RVMLKVPSETQTGKLFRMRGKGV 313

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Salmonella heidelberg (strain SL476) (taxid: 454169)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	448
302142020	470	unnamed protein product [Vitis vinifera]	0.955	0.910	0.633	1e-164
225459166	462	PREDICTED: chaperone protein dnaJ 1, mit	0.933	0.904	0.645	1e-164
255545870	494	chaperone protein DNAj, putative [Ricinu	0.957	0.868	0.683	1e-163
449515496	444	PREDICTED: chaperone protein dnaJ 1, mit	0.924	0.932	0.650	1e-154
449470084	460	PREDICTED: chaperone protein dnaJ 1, mit	0.941	0.917	0.640	1e-151
356498819	445	PREDICTED: chaperone protein dnaJ 1, mit	0.924	0.930	0.653	1e-149
30690263	408	chaperone protein dnaJ 1 [Arabidopsis th	0.776	0.852	0.628	1e-128
26451496	408	putative AtJ1 [Arabidopsis thaliana]	0.776	0.852	0.628	1e-128
15217871	427	chaperone protein dnaJ 1 [Arabidopsis th	0.776	0.814	0.628	1e-128
297845768	427	hypothetical protein ARALYDRAFT_473029 [	0.776	0.814	0.626	1e-126

>gi|302142020|emb|CBI19223.3| unnamed protein product [Vitis vinifera]

 Score =  585 bits (1507), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 309/488 (63%), Positives = 368/488 (75%), Gaps = 60/488 (12%)

Query: 1   MSRFSWLRLSRRQLLSSTAVE-SPINKSHCLQKAATLPQSILHKRGLYYCSSVTGTLADF 59
           M RF WL L +R L S++A++  PI   HC   A      ++H+R L+  + + G  +DF
Sbjct: 1   MGRFGWLGLCKRHLQSTSAIDFLPIE--HCRVPA------LIHQRILHGYNVLHGKPSDF 52

Query: 60  GTTGMFLARRCIHATGSCYSSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNP 119
            T G+  A R IHATG CYS++R+ YE+LGVP+NAS+DEIKKAFH+LAK++HPDANKNNP
Sbjct: 53  ATMGIPSATRYIHATGICYSTERNYYEILGVPQNASRDEIKKAFHVLAKKFHPDANKNNP 112

Query: 120 SAKRKFQEIRDAYETLRDSEKRAQYDR--RRSRGSENEKYSAGDAEGFRYAGDAEGFRYA 177
            AKRKFQEIRDAYETL+DSEKRAQYDR    S  SE+ K +AGD           GFRYA
Sbjct: 113 YAKRKFQEIRDAYETLQDSEKRAQYDRVPTLSHFSESVKDAAGD-----------GFRYA 161

Query: 178 YQTHFSDSFHKIFSEIFEDETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHG 237
           Y++HFSDSF KIF+EIFE ET +FA DIQVEL LSF+EAAKGCTKH+SFDA++PCDSC+G
Sbjct: 162 YRSHFSDSFRKIFAEIFEHETENFATDIQVELSLSFSEAAKGCTKHLSFDAYIPCDSCYG 221

Query: 238 RGFPADAKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVK 297
           RG P DAKTK+C  C+GIGRVTIPPFTSTCS+CKGLGRI+K+HC TC+GSGVV+GVK+V+
Sbjct: 222 RGHPVDAKTKVCPICKGIGRVTIPPFTSTCSSCKGLGRIVKEHCTTCRGSGVVEGVKDVE 281

Query: 298 VTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLK--------VADDPIFSRDGADVYV 349
           V IPAGVDSGDTI VP+ GNAGGRG + GNL+IKLK        VA D  F RDGADVYV
Sbjct: 282 VVIPAGVDSGDTIHVPKVGNAGGRGVEPGNLYIKLKAQLYLFHSVAKDRTFVRDGADVYV 341

Query: 350 DSNISFTQAILGGKVDVPTLSGKVQVKIPKGVQPGQLLVLRGKGLAKNGLFLDHGDQYVR 409
           +S+ISFTQAILGG V+VPTLSGK+Q+KIPKGVQPGQLLVLRGKGL K+GL +DHGDQYVR
Sbjct: 342 ESSISFTQAILGGTVEVPTLSGKMQLKIPKGVQPGQLLVLRGKGLPKHGLLVDHGDQYVR 401

Query: 410 FRVNFPT------------------------------WQRIVERVRAPKFMLELSLFLLI 439
           FR+NFPT                              WQ+I ER   P+FMLE+SLF+L+
Sbjct: 402 FRINFPTAINERQRAILEEFAKEEIVHDSSTSGEGNWWQQIFERGTGPRFMLEMSLFILV 461

Query: 440 LLFLSKTM 447
           LL LSKTM
Sbjct: 462 LLLLSKTM 469

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459166|ref|XP_002283963.1| PREDICTED: chaperone protein dnaJ 1, mitochondrial-like [Vitis vinifera]

 Score =  584 bits (1505), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 302/468 (64%), Positives = 362/468 (77%), Gaps = 50/468 (10%)

Query: 11  RRQLLSSTAVE-SPINKSHCLQKAATLPQSILHKRGLYYCSSVTGTLADFGTTGMFLARR 69
           +R L S++A++  PI   HC   A      ++H+R L+  + + G  +DF T G+  A R
Sbjct: 13  KRHLQSTSAIDFLPIE--HCRVPA------LIHQRILHGYNVLHGKPSDFATMGIPSATR 64

Query: 70  CIHATGSCYSSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIR 129
            IHATG CYS++R+ YE+LGVP+NAS+DEIKKAFH+LAK++HPDANKNNP AKRKFQEIR
Sbjct: 65  YIHATGICYSTERNYYEILGVPQNASRDEIKKAFHVLAKKFHPDANKNNPYAKRKFQEIR 124

Query: 130 DAYETLRDSEKRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKI 189
           DAYETL+DSEKRAQYDR  +  SE+ K +AGD           GFRYAY++HFSDSF KI
Sbjct: 125 DAYETLQDSEKRAQYDRECTMSSESVKDAAGD-----------GFRYAYRSHFSDSFRKI 173

Query: 190 FSEIFEDETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKIC 249
           F+EIFE ET +FA DIQVEL LSF+EAAKGCTKH+SFDA++PCDSC+GRG P DAKTK+C
Sbjct: 174 FAEIFEHETENFATDIQVELSLSFSEAAKGCTKHLSFDAYIPCDSCYGRGHPVDAKTKVC 233

Query: 250 STCRGIGRVTIPPFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDT 309
             C+GIGRVTIPPFTSTCS+CKGLGRI+K+HC TC+GSGVV+GVK+V+V IPAGVDSGDT
Sbjct: 234 PICKGIGRVTIPPFTSTCSSCKGLGRIVKEHCTTCRGSGVVEGVKDVEVVIPAGVDSGDT 293

Query: 310 IRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTL 369
           I VP+ GNAGGRG + GNL+IKLKVA D  F RDGADVYV+S+ISFTQAILGG V+VPTL
Sbjct: 294 IHVPKVGNAGGRGVEPGNLYIKLKVAKDRTFVRDGADVYVESSISFTQAILGGTVEVPTL 353

Query: 370 SGKVQVKIPKGVQPGQLLVLRGKGLAKNGLFLDHGDQYVRFRVNFPT------------- 416
           SGK+Q+KIPKGVQPGQLLVLRGKGL K+GL +DHGDQYVRFR+NFPT             
Sbjct: 354 SGKMQLKIPKGVQPGQLLVLRGKGLPKHGLLVDHGDQYVRFRINFPTAINERQRAILEEF 413

Query: 417 -----------------WQRIVERVRAPKFMLELSLFLLILLFLSKTM 447
                            WQ+I ER   P+FMLE+SLF+L+LL LSKTM
Sbjct: 414 AKEEIVHDSSTSGEGNWWQQIFERGTGPRFMLEMSLFILVLLLLSKTM 461

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545870|ref|XP_002513995.1| chaperone protein DNAj, putative [Ricinus communis] gi|223547081|gb|EEF48578.1| chaperone protein DNAj, putative [Ricinus communis]

 Score =  581 bits (1497), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 307/449 (68%), Positives = 354/449 (78%), Gaps = 20/449 (4%)

Query: 1   MSRFSWLR--LSRRQLLSSTAVESPINKSHCLQKAATLPQSILHKRGLYYCSSVTGTLAD 58
           M R+ WL     RR LLSS AVES +N+ H  +K +TL Q +   R  + CS V    + 
Sbjct: 1   MGRYGWLATLCRRRHLLSSAAVESTVNRGHWHRKISTLRQHLCRDRCFHSCSFVIAKRSG 60

Query: 59  -FGTTGM-FLARRCIHATGSCYSSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANK 116
             GT  M  L  R IHATG+C + +   YE+LGV ENASQDEIKKAFH+LAK+YHPDANK
Sbjct: 61  CLGTAEMQSLKCRYIHATGTCNAKEPSYYEILGVSENASQDEIKKAFHLLAKKYHPDANK 120

Query: 117 NNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSAG----------DAEGFR 166
           NNPSAKR FQEIR+AYETL+DSEKRAQYD R +R SE  +Y A           DA  FR
Sbjct: 121 NNPSAKRNFQEIREAYETLKDSEKRAQYDTRHARSSEKVEYGANFADWFGHGAEDAARFR 180

Query: 167 Y-AGDAEGFRYAYQTHFSDSFHKIFSEIFEDETSHFAPDIQVELVLSFAEAAKGCTKHVS 225
           Y AG+ +GF Y+YQT+FSDSFHKIFSEIFED  +  A DIQVELVLSF EAA+GCTKH+S
Sbjct: 181 YGAGNGKGFSYSYQTNFSDSFHKIFSEIFED-ANQSASDIQVELVLSFTEAARGCTKHLS 239

Query: 226 FDAFVPCDSCHGRGFPADAKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDHCMTCK 285
           FDAFVPCDSC GRGFP DAKT++C  CRGIG++TIPPFTSTCS+CKG GRII+++CM+C+
Sbjct: 240 FDAFVPCDSCDGRGFPIDAKTRVCPACRGIGKITIPPFTSTCSSCKGSGRIIEEYCMSCR 299

Query: 286 GSGVVDGVKEVKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGA 345
           GSGVV+GVKEVKVT+PAG+DSGDTIRVPEAGNAGGRG Q GNLFI LKV DDP+F+RDG 
Sbjct: 300 GSGVVEGVKEVKVTVPAGIDSGDTIRVPEAGNAGGRGHQPGNLFISLKVEDDPVFTRDGV 359

Query: 346 DVYVDSNISFTQAILGGKVDVPTLSGKVQVKIPKGVQPGQLLVLRGKGLAKNGLFLDHGD 405
           DVYVD+NISFTQAILGGKVDVPTLSGK Q+KIPKGVQPGQLLVLRGKGL K+G  +DHGD
Sbjct: 360 DVYVDANISFTQAILGGKVDVPTLSGKFQIKIPKGVQPGQLLVLRGKGLPKHGFLVDHGD 419

Query: 406 QYVRFRVNFPTWQRIVERVRA--PKFMLE 432
           Q+VRFR+NFPT   I ER RA   +F LE
Sbjct: 420 QFVRFRINFPT--AINERQRAILEEFALE 446

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449515496|ref|XP_004164785.1| PREDICTED: chaperone protein dnaJ 1, mitochondrial-like [Cucumis sativus]

 Score =  550 bits (1418), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 277/426 (65%), Positives = 323/426 (75%), Gaps = 12/426 (2%)

Query: 1   MSRFSWLRLSRRQLLSSTAVESPINKSHCLQKAATLPQSILHKRGLYYCSSVTGTLADFG 60
           M R  WL L RRQLLSS  V   I+    L K ++L Q     R L    S  G   DF 
Sbjct: 1   MKRLGWLGLCRRQLLSSEGVGPSIDLPLSLGKVSSLRQFFTCARALQAFPSAVGNGPDFA 60

Query: 61  TTGMFLARRCIHATGSCYSSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPS 120
           T     +R  IH+TGSC S +RD YE+LGV  NAS++EIKKA+H LAK+YHPDANKNNPS
Sbjct: 61  TA-FPGSRHFIHSTGSCCSIERDYYEILGVQHNASREEIKKAYHALAKKYHPDANKNNPS 119

Query: 121 AKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQT 180
           AKRKFQEIR+AYETL+DSEKR+QYD+R    SEN  + AGDAEGF Y          Y+T
Sbjct: 120 AKRKFQEIREAYETLQDSEKRSQYDQRHGGESENVGFGAGDAEGFSYT---------YRT 170

Query: 181 HFSDSFHKIFSEIFEDETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGF 240
           HFSDSF KIFSEIFE ET     DIQV+L+LSFAEAAKGCTK +SFDA VPCDSC+GRG+
Sbjct: 171 HFSDSFQKIFSEIFEHETGRLPSDIQVDLLLSFAEAAKGCTKDLSFDALVPCDSCYGRGY 230

Query: 241 PADAKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTI 300
           P +A  + C TCRG+GRVTIPPFTSTC+TC+G G+II++ C  C+G GVV+GV +V VTI
Sbjct: 231 PVNASKRSCPTCRGLGRVTIPPFTSTCTTCRGSGQIIEESCGQCRGMGVVEGVMKVTVTI 290

Query: 301 PAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAIL 360
           PAGVDSGDTIRVPEAGN+GGR    GNL IKLKVA+D +F RDG D+YVDSNISFTQAIL
Sbjct: 291 PAGVDSGDTIRVPEAGNSGGRDTHPGNLIIKLKVAEDHVFKRDGVDIYVDSNISFTQAIL 350

Query: 361 GGKVDVPTLSGKVQVKIPKGVQPGQLLVLRGKGLAKNGLFLDHGDQYVRFRVNFPTWQRI 420
           GGKV+VPTLSG++Q+++PKGVQPGQLL LRGKGL K+G F+D GDQYVRFR+ FPT   I
Sbjct: 351 GGKVEVPTLSGRMQIEVPKGVQPGQLLTLRGKGLPKHGFFVDRGDQYVRFRIKFPT--EI 408

Query: 421 VERVRA 426
            ER RA
Sbjct: 409 SERQRA 414

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449470084|ref|XP_004152748.1| PREDICTED: chaperone protein dnaJ 1, mitochondrial-like [Cucumis sativus]

 Score =  540 bits (1392), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 278/434 (64%), Positives = 326/434 (75%), Gaps = 12/434 (2%)

Query: 1   MSRFSWLRLSRRQLLSSTAVESPINKSHCLQKAATLPQSILHKRGLYYCSSVTGTLADFG 60
           M R  WL L RRQLLSS  V   I+    L K  +L Q     R L    S  G   DF 
Sbjct: 1   MKRLGWLGLCRRQLLSSEGVGPSIDLRLSLGKVPSLRQFFTCARALQAFPSAVGNGPDFA 60

Query: 61  TTGMFLARRCIHATGSCYSSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPS 120
           T     +R  IH+TGSC S +RD YE+LGV  NAS++EIKKA+H LAK+YHPDANKNNPS
Sbjct: 61  TA-FPGSRHFIHSTGSCCSIERDYYEILGVQHNASREEIKKAYHALAKKYHPDANKNNPS 119

Query: 121 AKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSENEKYS-------AGDAEGFRY-AGDAE 172
           AKRKFQEIR+AYETL+DSEKR+QYD+  +     EKY         G++E   + AGDAE
Sbjct: 120 AKRKFQEIREAYETLQDSEKRSQYDQV-AFPKLLEKYPIGFCCLHGGESENVGFGAGDAE 178

Query: 173 GFRYAYQTHFSDSFHKIFSEIFEDETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPC 232
           GF Y Y+THFSDSF KIFSEIFE ET     DIQV+L+LSFAEAAKGCTK +SFDA VPC
Sbjct: 179 GFSYTYRTHFSDSFQKIFSEIFEHETGRLPSDIQVDLLLSFAEAAKGCTKDLSFDALVPC 238

Query: 233 DSCHGRGFPADAKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDHCMTCKGSGVVDG 292
           DSC+GRG+P +A  + C TCRG+GRVTIPPFTSTC+TC+G G+II++ C  C+G GVV+G
Sbjct: 239 DSCYGRGYPVNASKRSCPTCRGLGRVTIPPFTSTCTTCRGSGQIIEESCGQCRGMGVVEG 298

Query: 293 VKEVKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSN 352
           V +V VTIPAGVDSGDTIRVPEAGN+GGR    GNL IKLKVA+D +F RDG D+YVDSN
Sbjct: 299 VMKVTVTIPAGVDSGDTIRVPEAGNSGGRDTHPGNLIIKLKVAEDHVFKRDGVDIYVDSN 358

Query: 353 ISFTQAILGGKVDVPTLSGKVQVKIPKGVQPGQLLVLRGKGLAKNGLFLDHGDQYVRFRV 412
           ISFTQAILGGKV+VPTLSG++Q+++PKGVQPGQLL LRGKGL K+G F+D GDQYVRFR+
Sbjct: 359 ISFTQAILGGKVEVPTLSGRMQIEVPKGVQPGQLLTLRGKGLPKHGFFVDRGDQYVRFRI 418

Query: 413 NFPTWQRIVERVRA 426
            FPT   I ER RA
Sbjct: 419 KFPT--EISERQRA 430

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356498819|ref|XP_003518246.1| PREDICTED: chaperone protein dnaJ 1, mitochondrial-like [Glycine max]

 Score =  534 bits (1375), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 279/427 (65%), Positives = 324/427 (75%), Gaps = 13/427 (3%)

Query: 1   MSRFSWLRLSRRQLLSSTAVESPINKSH-CLQKAATLPQSILHKRGLYYCSSVTGTLADF 59
           M RF+W    RR LLSS   ES ++K      K ++  QS L  R L  C  VT T  + 
Sbjct: 1   MRRFAWFTPYRRHLLSSLTSESLVDKGESTFTKFSSSRQSFLLARALVNCGFVTKT-EES 59

Query: 60  GTTGMFLARRCIHATGSCYSSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNP 119
               + L  R  HAT    S+ RD Y  LGVPENASQDEIKKAFH LAK+YHPDANKNNP
Sbjct: 60  RIPRVPLRYRYFHATAFSSSADRDHYGTLGVPENASQDEIKKAFHSLAKKYHPDANKNNP 119

Query: 120 SAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQ 179
           SAKRKFQ+IR+AYETLRDS+KRA+YD+ R+RGSE+ +Y   DAE FR A         Y+
Sbjct: 120 SAKRKFQDIREAYETLRDSKKRAEYDKMRTRGSEDIEYDRDDAERFRNA---------YR 170

Query: 180 THFSDSFHKIFSEIFEDETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRG 239
           +HFSDSFHK+F EIFE+ T+ F+ +I+VEL L+F+EAA+GCTKHVSFDA VPCD C+G+G
Sbjct: 171 SHFSDSFHKVFYEIFEEATTQFSSNIEVELSLTFSEAARGCTKHVSFDALVPCDHCNGQG 230

Query: 240 FPADAKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVT 299
           +P DA  K+C TCRG GRVTIPPFTSTC TCKG GRIIKD C+TC GSG V+GVKEVKVT
Sbjct: 231 YPLDAIPKVCPTCRGSGRVTIPPFTSTCITCKGSGRIIKDSCLTCGGSGAVEGVKEVKVT 290

Query: 300 IPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAI 359
           IPAGVDSGDTI VPE GNA G G + G+L+IK+KV +D IF RDGAD+YVDSNISFTQAI
Sbjct: 291 IPAGVDSGDTIHVPEGGNAAGSGGRPGSLYIKIKVTEDSIFVRDGADIYVDSNISFTQAI 350

Query: 360 LGGKVDVPTLSGKVQVKIPKGVQPGQLLVLRGKGLAKNGLFLDHGDQYVRFRVNFPTWQR 419
           LGGKV+VPTLSGK+Q+KIPKGVQ GQLLVLRGKGL K+G  + HGDQYVRFRVN P    
Sbjct: 351 LGGKVEVPTLSGKMQLKIPKGVQHGQLLVLRGKGLPKHGFLVHHGDQYVRFRVNLPI--E 408

Query: 420 IVERVRA 426
           I ER RA
Sbjct: 409 INERQRA 415

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30690263|ref|NP_849719.1| chaperone protein dnaJ 1 [Arabidopsis thaliana] gi|66774115|sp|Q38813.2|DNAJ1_ARATH RecName: Full=Chaperone protein dnaJ 1, mitochondrial; Short=AtDjB1; Short=AtJ1; Flags: Precursor gi|332192810|gb|AEE30931.1| chaperone protein dnaJ 1 [Arabidopsis thaliana]

 Score =  463 bits (1192), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 227/361 (62%), Positives = 279/361 (77%), Gaps = 13/361 (3%)

Query: 66  LARRCIHATGSCYSSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKF 125
           L  R IHATG   SS R+ Y++LGV   A+++EIKK+FH LAK++HPD N+NNPSAKRKF
Sbjct: 31  LFERYIHATGINNSSARNYYDVLGVSPKATREEIKKSFHELAKKFHPDTNRNNPSAKRKF 90

Query: 126 QEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDS 185
           QEIR+AYETL +SE+R +YD+ + R S+   Y   D       GD+E FR AYQ++FSD+
Sbjct: 91  QEIREAYETLGNSERREEYDKLQYRNSD---YVNNDG------GDSERFRRAYQSNFSDT 141

Query: 186 FHKIFSEIFEDETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAK 245
           FHKIFSEIFE+  +   PDI+VEL LS +EAA+GCTK +SFDA+V CDSC G G P+DA 
Sbjct: 142 FHKIFSEIFEN--NQIKPDIRVELSLSLSEAAEGCTKRLSFDAYVFCDSCDGLGHPSDAA 199

Query: 246 TKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVD 305
             IC TCRG+GRVTIPPFT++C TCKG G IIK++CM+C+GSG+V+G K  ++ IP GV+
Sbjct: 200 MSICPTCRGVGRVTIPPFTASCQTCKGTGHIIKEYCMSCRGSGIVEGTKTAELVIPGGVE 259

Query: 306 SGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVD 365
           S  TI +  AGN   R  Q GNL+IKLKVA+D  F+RDG+D+YVD+NISFTQAILGGKV 
Sbjct: 260 SEATITIVGAGNVSSRTSQPGNLYIKLKVANDSTFTRDGSDIYVDANISFTQAILGGKVV 319

Query: 366 VPTLSGKVQVKIPKGVQPGQLLVLRGKGLAKNGLFLDHGDQYVRFRVNFPTWQRIVERVR 425
           VPTLSGK+Q+ IPKG QP QLLVLRGKGL K G F+DHGDQYVRFRVNFPT   + ER R
Sbjct: 320 VPTLSGKIQLDIPKGTQPDQLLVLRGKGLPKQGFFVDHGDQYVRFRVNFPT--EVNERQR 377

Query: 426 A 426
           A
Sbjct: 378 A 378

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|26451496|dbj|BAC42846.1| putative AtJ1 [Arabidopsis thaliana]

 Score =  463 bits (1192), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 227/361 (62%), Positives = 279/361 (77%), Gaps = 13/361 (3%)

Query: 66  LARRCIHATGSCYSSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKF 125
           L  R IHATG   SS R+ Y++LGV   A+++EIKK+FH LAK++HPD N+NNPSAKRKF
Sbjct: 31  LFERYIHATGINNSSARNYYDVLGVSPKATREEIKKSFHELAKKFHPDTNRNNPSAKRKF 90

Query: 126 QEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDS 185
           QEIR+AYETL +SE+R +YD+ + R S+   Y   D       GD+E FR AYQ++FSD+
Sbjct: 91  QEIREAYETLGNSERREEYDKLQYRNSD---YVNSDG------GDSERFRRAYQSNFSDT 141

Query: 186 FHKIFSEIFEDETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAK 245
           FHKIFSEIFE+  +   PDI+VEL LS +EAA+GCTK +SFDA+V CDSC G G P+DA 
Sbjct: 142 FHKIFSEIFEN--NQIKPDIRVELSLSLSEAAEGCTKRLSFDAYVFCDSCDGLGHPSDAA 199

Query: 246 TKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVD 305
             IC TCRG+GRVTIPPFT++C TCKG G IIK++CM+C+GSG+V+G K  ++ IP GV+
Sbjct: 200 MSICPTCRGVGRVTIPPFTASCQTCKGTGHIIKEYCMSCRGSGIVEGTKTAELVIPGGVE 259

Query: 306 SGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVD 365
           S  TI +  AGN   R  Q GNL+IKLKVA+D  F+RDG+D+YVD+NISFTQAILGGKV 
Sbjct: 260 SEATITIVGAGNVSSRTSQPGNLYIKLKVANDSTFTRDGSDIYVDANISFTQAILGGKVV 319

Query: 366 VPTLSGKVQVKIPKGVQPGQLLVLRGKGLAKNGLFLDHGDQYVRFRVNFPTWQRIVERVR 425
           VPTLSGK+Q+ IPKG QP QLLVLRGKGL K G F+DHGDQYVRFRVNFPT   + ER R
Sbjct: 320 VPTLSGKIQLDIPKGTQPDQLLVLRGKGLPKQGFFVDHGDQYVRFRVNFPT--EVNERQR 377

Query: 426 A 426
           A
Sbjct: 378 A 378

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15217871|ref|NP_174142.1| chaperone protein dnaJ 1 [Arabidopsis thaliana] gi|9795616|gb|AAF98434.1|AC021044_13 Putative dnaJ protein [Arabidopsis thaliana] gi|332192811|gb|AEE30932.1| chaperone protein dnaJ 1 [Arabidopsis thaliana]

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 227/361 (62%), Positives = 279/361 (77%), Gaps = 13/361 (3%)

Query: 66  LARRCIHATGSCYSSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKF 125
           L  R IHATG   SS R+ Y++LGV   A+++EIKK+FH LAK++HPD N+NNPSAKRKF
Sbjct: 31  LFERYIHATGINNSSARNYYDVLGVSPKATREEIKKSFHELAKKFHPDTNRNNPSAKRKF 90

Query: 126 QEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDS 185
           QEIR+AYETL +SE+R +YD+ + R S+   Y   D       GD+E FR AYQ++FSD+
Sbjct: 91  QEIREAYETLGNSERREEYDKLQYRNSD---YVNNDG------GDSERFRRAYQSNFSDT 141

Query: 186 FHKIFSEIFEDETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAK 245
           FHKIFSEIFE+  +   PDI+VEL LS +EAA+GCTK +SFDA+V CDSC G G P+DA 
Sbjct: 142 FHKIFSEIFEN--NQIKPDIRVELSLSLSEAAEGCTKRLSFDAYVFCDSCDGLGHPSDAA 199

Query: 246 TKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVD 305
             IC TCRG+GRVTIPPFT++C TCKG G IIK++CM+C+GSG+V+G K  ++ IP GV+
Sbjct: 200 MSICPTCRGVGRVTIPPFTASCQTCKGTGHIIKEYCMSCRGSGIVEGTKTAELVIPGGVE 259

Query: 306 SGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVD 365
           S  TI +  AGN   R  Q GNL+IKLKVA+D  F+RDG+D+YVD+NISFTQAILGGKV 
Sbjct: 260 SEATITIVGAGNVSSRTSQPGNLYIKLKVANDSTFTRDGSDIYVDANISFTQAILGGKVV 319

Query: 366 VPTLSGKVQVKIPKGVQPGQLLVLRGKGLAKNGLFLDHGDQYVRFRVNFPTWQRIVERVR 425
           VPTLSGK+Q+ IPKG QP QLLVLRGKGL K G F+DHGDQYVRFRVNFPT   + ER R
Sbjct: 320 VPTLSGKIQLDIPKGTQPDQLLVLRGKGLPKQGFFVDHGDQYVRFRVNFPT--EVNERQR 377

Query: 426 A 426
           A
Sbjct: 378 A 378

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297845768|ref|XP_002890765.1| hypothetical protein ARALYDRAFT_473029 [Arabidopsis lyrata subsp. lyrata] gi|297336607|gb|EFH67024.1| hypothetical protein ARALYDRAFT_473029 [Arabidopsis lyrata subsp. lyrata]

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 226/361 (62%), Positives = 277/361 (76%), Gaps = 13/361 (3%)

Query: 66  LARRCIHATGSCYSSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKF 125
           L  R IHATG   SS R+ Y++LGV   A+++EIKK+FH LAK++HPD N+NNPSAKRKF
Sbjct: 31  LFERYIHATGIYSSSARNYYDVLGVSPKATREEIKKSFHELAKKFHPDTNRNNPSAKRKF 90

Query: 126 QEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDS 185
           QEIR+AYETL +SE+R +YD+ R    +N  Y   D       GD E FR AYQ++FSDS
Sbjct: 91  QEIREAYETLGNSERREEYDKLRY---QNSDYVNNDG------GDGERFRRAYQSNFSDS 141

Query: 186 FHKIFSEIFEDETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAK 245
           FHKIFSEIFE+  +    DI+VEL LSF+EAA+GCTK +SFDA+V CDSC G G P DA 
Sbjct: 142 FHKIFSEIFEN--NQIKSDIRVELSLSFSEAAEGCTKRLSFDAYVFCDSCDGLGHPRDAA 199

Query: 246 TKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVD 305
             +C TCRG+GRVTIPPFT++C TCKG G IIK++CM+C+GSG+V+  K V++ IP GV+
Sbjct: 200 MSVCPTCRGLGRVTIPPFTASCQTCKGTGHIIKEYCMSCRGSGIVEATKTVELAIPGGVE 259

Query: 306 SGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVD 365
           S  TI +  AGN   R  Q GNL+IKLKVA+D  F+RDG+D+YVD+NISFTQAILGGKV 
Sbjct: 260 SEATITIGGAGNVRSRTSQPGNLYIKLKVANDSTFTRDGSDIYVDANISFTQAILGGKVV 319

Query: 366 VPTLSGKVQVKIPKGVQPGQLLVLRGKGLAKNGLFLDHGDQYVRFRVNFPTWQRIVERVR 425
           VPTLSGK+Q+ IP+G QPGQLLVLRGKGL K G F+DHGDQYVRFR+NFPT   + ER R
Sbjct: 320 VPTLSGKIQLDIPEGTQPGQLLVLRGKGLPKQGFFVDHGDQYVRFRINFPT--EVNERQR 377

Query: 426 A 426
           A
Sbjct: 378 A 378

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	448
TAIR|locus:2032175	427	ATJ1 [Arabidopsis thaliana (ta	0.776	0.814	0.628	3.3e-118
TAIR|locus:2162692	456	GFA2 "gametophytic factor 2" [	0.776	0.763	0.424	4.9e-69
TIGR_CMR|GSU_0034	373	GSU_0034 "chaperone protein dn	0.727	0.873	0.404	7.1e-61
DICTYBASE|DDB_G0278789	460	DDB_G0278789 "heat shock prote	0.754	0.734	0.375	1.5e-60
UNIPROTKB|O34242	381	dnaJ "Chaperone protein DnaJ"	0.723	0.850	0.393	8.4e-58
TIGR_CMR|VC_0856	381	VC_0856 "dnaJ protein" [Vibrio	0.723	0.850	0.393	8.4e-58
TIGR_CMR|BA_4538	371	BA_4538 "chaperone protein dna	0.732	0.884	0.397	1.7e-57
UNIPROTKB|P08622	376	dnaJ [Escherichia coli K-12 (t	0.716	0.853	0.383	3.6e-57
TIGR_CMR|SO_1127	378	SO_1127 "chaperone protein Dna	0.671	0.796	0.404	4.6e-57
TIGR_CMR|SPO_0044	381	SPO_0044 "chaperone protein Dn	0.727	0.855	0.383	1.1e-55

TAIR|locus:2032175 ATJ1 [Arabidopsis thaliana (taxid:3702)]

 Score = 1164 (414.8 bits), Expect = 3.3e-118, P = 3.3e-118
 Identities = 227/361 (62%), Positives = 279/361 (77%)

Query:    66 LARRCIHATGSCYSSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKF 125
             L  R IHATG   SS R+ Y++LGV   A+++EIKK+FH LAK++HPD N+NNPSAKRKF
Sbjct:    31 LFERYIHATGINNSSARNYYDVLGVSPKATREEIKKSFHELAKKFHPDTNRNNPSAKRKF 90

Query:   126 QEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDS 185
             QEIR+AYETL +SE+R +YD+ + R S+   Y   D       GD+E FR AYQ++FSD+
Sbjct:    91 QEIREAYETLGNSERREEYDKLQYRNSD---YVNNDG------GDSERFRRAYQSNFSDT 141

Query:   186 FHKIFSEIFEDETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAK 245
             FHKIFSEIFE+  +   PDI+VEL LS +EAA+GCTK +SFDA+V CDSC G G P+DA 
Sbjct:   142 FHKIFSEIFEN--NQIKPDIRVELSLSLSEAAEGCTKRLSFDAYVFCDSCDGLGHPSDAA 199

Query:   246 TKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVD 305
               IC TCRG+GRVTIPPFT++C TCKG G IIK++CM+C+GSG+V+G K  ++ IP GV+
Sbjct:   200 MSICPTCRGVGRVTIPPFTASCQTCKGTGHIIKEYCMSCRGSGIVEGTKTAELVIPGGVE 259

Query:   306 SGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVD 365
             S  TI +  AGN   R  Q GNL+IKLKVA+D  F+RDG+D+YVD+NISFTQAILGGKV 
Sbjct:   260 SEATITIVGAGNVSSRTSQPGNLYIKLKVANDSTFTRDGSDIYVDANISFTQAILGGKVV 319

Query:   366 VPTLSGKVQVKIPKGVQPGQLLVLRGKGLAKNGLFLDHGDQYVRFRVNFPTWQRIVERVR 425
             VPTLSGK+Q+ IPKG QP QLLVLRGKGL K G F+DHGDQYVRFRVNFPT   + ER R
Sbjct:   320 VPTLSGKIQLDIPKGTQPDQLLVLRGKGLPKQGFFVDHGDQYVRFRVNFPT--EVNERQR 377

Query:   426 A 426
             A
Sbjct:   378 A 378

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;ISS

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009408 "response to heat" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

TAIR|locus:2162692 GFA2 "gametophytic factor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 700 (251.5 bits), Expect = 4.9e-69, P = 4.9e-69
 Identities = 157/370 (42%), Positives = 215/370 (58%)

Query:    65 FLARRCIHATGSCYSSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRK 124
             F + R  H TGS + S +D Y +LGV +NA + EIKKA++ LAK+ HPD NK++P A+ K
Sbjct:    76 FGSTRSFHGTGSSFMSAKDYYSVLGVSKNAQEGEIKKAYYGLAKKLHPDMNKDDPEAETK 135

Query:   125 FQEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSAG--DAEGFRYAGDAEGFRYAYQTHF 182
             FQE+  AYE L+D EKR  YD+      E +  S G  + +GF   G   GF       F
Sbjct:   136 FQEVSKAYEILKDKEKRDLYDQVGHEAFE-QNASGGFPNDQGFG-GGGGGGFN-----PF 188

Query:   183 SDSFHKIFSEIFEDETSHFA-PDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFP 241
              D F     +IF          D++V L LSF EA +GC+K V+F   + C++C G+G P
Sbjct:   189 -DIFGSFNGDIFNMYRQDIGGQDVKVLLDLSFMEAVQGCSKTVTFQTEMACNTCGGQGVP 247

Query:   242 ADAKTKICSTCRGIGRVTIP----PFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVK 297
                K + C  C G G  ++        +TC  C G G+     C +C+G+ VV G K VK
Sbjct:   248 PGTKREKCKACNGSGMTSLRRGMLSIQTTCQKCGGAGQTFSSICKSCRGARVVRGQKSVK 307

Query:   298 VTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQ 357
             VTI  GVD+ DT++V   G A   G Q G+L++ LKV +DP+F R+G+D++VD+ +S TQ
Sbjct:   308 VTIDPGVDNSDTLKVARVGGADPEGDQPGDLYVTLKVREDPVFRREGSDIHVDAVLSVTQ 367

Query:   358 AILGGKVDVPTLSGKVQVKIPKGVQPGQLLVLRGKGLA--KNGLFLDHGDQYVRFRVNFP 415
             AILGG + VPTL+G V VK+  G QPG  +VLR KG+   K+  F   GDQYV F V+ P
Sbjct:   368 AILGGTIQVPTLTGDVVVKVRPGTQPGHKVVLRNKGIRARKSTKF---GDQYVHFNVSIP 424

Query:   416 TWQRIVERVR 425
                 I +R R
Sbjct:   425 A--NITQRQR 432

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0000740 "nuclear membrane fusion" evidence=IMP

GO:0010198 "synergid death" evidence=IMP

GO:0051085 "chaperone mediated protein folding requiring cofactor" evidence=IGI

GO:0000741 "karyogamy" evidence=RCA

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

GO:0009553 "embryo sac development" evidence=IMP

GO:0009558 "embryo sac cellularization" evidence=IMP

GO:0010197 "polar nucleus fusion" evidence=IMP

TIGR_CMR|GSU_0034 GSU_0034 "chaperone protein dnaJ" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
 Identities = 140/346 (40%), Positives = 197/346 (56%)

Query:    79 SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDS 138
             + KRD YE+LGV +NAS  EIKKAF  LA QYHPD N ++  A+ KF+EI +AYE L D 
Sbjct:     3 ADKRDYYEVLGVHKNASDTEIKKAFRKLAIQYHPDKNPDDKEAEEKFKEITEAYEVLSDP 62

Query:   139 EKRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIF---- 194
             +KRAQYD+    G     +S G   GF  AG          T F D F  IF +IF    
Sbjct:    63 QKRAQYDQFGHAGVGAGGFSGGGFGGFG-AG----------TPFGDIFGDIFGDIFGGRP 111

Query:   195 EDETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRG 254
                      D+Q  + LSF EAA G  K +       C  C G G     + K+C TCRG
Sbjct:   112 RGSRGRRGDDLQYNMELSFEEAAFGAEKEIQVPYGKRCGDCGGSGAKPGTEPKVCPTCRG 171

Query:   255 IGRVTIPP-FTS---TCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDTI 310
              G+V     F S   TC+ C G GR++++ C +C+GSG++   K + V +PAGV++G  +
Sbjct:   172 AGQVRFQQGFFSVSKTCNHCNGEGRVVENPCTSCRGSGMIRDTKTLSVKVPAGVETGTRL 231

Query:   311 RVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLS 370
             ++   G  G +G  +G+L++ + V + PIF+R+  DV  +  +SF QA LG +++VPTL 
Sbjct:   232 KLSGEGGQGIKGGGNGDLYVAIAVREHPIFTREDNDVLCEIPVSFVQAALGCEIEVPTLD 291

Query:   371 GKVQVKIPKGVQPGQLLVLRGKGLAKNGLFLDHGDQYVRFRVNFPT 416
             GKV +KIP+G Q G++  LRGKG+ +   +   GDQ V  +V  P+
Sbjct:   292 GKVSMKIPEGTQSGRIFRLRGKGVPQLQGY-GRGDQLVIIKVETPS 336

GO:0009408 "response to heat" evidence=ISS

DICTYBASE|DDB_G0278789 DDB_G0278789 "heat shock protein DnaJ family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 620 (223.3 bits), Expect = 1.5e-60, P = 1.5e-60
 Identities = 135/360 (37%), Positives = 199/360 (55%)

Query:    68 RRCIHATGSCYSSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQE 127
             +R   +T    S KRD YE+LGV  +AS+ +IKKAF+ LAK+YHPD N+++P+A + F E
Sbjct:    59 KRYFRSTSPILSEKRDLYEVLGVSRDASKQDIKKAFYALAKKYHPDTNRDDPNAHKTFAE 118

Query:   128 IRDAYETLRDSEKRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFH 187
             I +AY+ L D +KR+ YD    +G+  E    G   GF   G   G     +  F   F 
Sbjct:   119 ISNAYDVLYDDKKRSVYDTAGHQGATQENMEHG---GF--PGGMGGQNVNLEDLFGGGFD 173

Query:   188 KIFSEIFED-------ETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGF 240
                +++F         + S    D++V L L F EA  G  K +SF     C  C G G 
Sbjct:   174 --LNDLFGGGGGGGGGKKSSVGADMEVNLHLDFMEAVNGAEKDISFYGGTKCTPCDGSGA 231

Query:   241 PADAKTKICSTCRGIGRVTIPP----FTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEV 296
                 K + C  C G G  T         + C  CKG G++IK+ C +CKG G+  G + V
Sbjct:   232 KPGTKPQTCKQCGGTGSQTRSNGFFHMATNCRACKGTGKVIKEPCSSCKGKGITQGERTV 291

Query:   297 KVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFT 356
              + +PAG+++G TI++   G     GR+ GNLF+ + V++  +F R G D+++D  I+ +
Sbjct:   292 NIKVPAGINNGTTIKLAGEGEPSKTGRR-GNLFVHITVSEHELFRRQGNDIHLDVPITIS 350

Query:   357 QAILGGKVDVPTLSGKVQVKIPKGVQPGQLLVLRGKGLA-KNGLFLDHGDQYVRFRVNFP 415
             QAILG  V +PTLSG+V++K+PKG QP +  VL+GKG+   N    + G Q+V F V+ P
Sbjct:   351 QAILGDTVSIPTLSGEVELKVPKGTQPNEKRVLKGKGVRFVNST--EFGSQFVHFIVSIP 408

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0009408 "response to heat" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0046872 "metal ion binding" evidence=IEA

GO:0006950 "response to stress" evidence=IEA

UNIPROTKB|O34242 dnaJ "Chaperone protein DnaJ" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 594 (214.2 bits), Expect = 8.4e-58, P = 8.4e-58
 Identities = 136/346 (39%), Positives = 187/346 (54%)

Query:    80 SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSE 139
             SKRD YE+LGV  +AS+ +IKKA+  LA +YHPD N  +  A  KF+E+++AYE L D++
Sbjct:     2 SKRDFYEVLGVGRDASERDIKKAYKRLAMKYHPDRNSGDAGAAEKFKEVKEAYEILTDAQ 61

Query:   140 KRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFEDETS 199
             K+A YD+      E     AG   GF   G   G        F D F  +F +IF     
Sbjct:    62 KKAAYDQYGHAAFEQ---GAG---GFGGGGFGGG-----GADFGDIFGDVFGDIFGGGRR 110

Query:   200 HFAP------DIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCR 253
                P      D++  + LS  EA +GC+K +     V CD+C G G       + C TC 
Sbjct:   111 GGGPRAQRGSDLRYNMELSLEEAVRGCSKEIEVPTLVHCDACDGSGAKKGTSAQTCGTCH 170

Query:   254 GIGRVTIPP--FT--STCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDT 309
             G G+V +    F    TC TC G G+IIKD C  C G G     K + V IPAGVD+GD 
Sbjct:   171 GHGQVQMRQGFFAVQQTCPTCHGKGKIIKDPCNVCHGQGRKQKTKTLNVKIPAGVDTGDR 230

Query:   310 IRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTL 369
             IR+   G AG  G   G+L++++ V +  IF RDG ++Y +  +SF  A LGG+V+VPTL
Sbjct:   231 IRLSGEGEAGEMGAPAGDLYVQVHVKEHHIFERDGNNLYCEVPVSFAMAALGGEVEVPTL 290

Query:   370 SGKVQVKIPKGVQPGQLLVLRGKGLAKNGLFLDHGDQYVRFRVNFP 415
              G+V +K+P   Q G++  +RGKG+ K       GD  V+  V  P
Sbjct:   291 DGRVSLKVPAETQTGRMFRMRGKGV-KGVRSAALGDLIVKLVVETP 335

GO:0006457 "protein folding" evidence=ISS

TIGR_CMR|VC_0856 VC_0856 "dnaJ protein" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 594 (214.2 bits), Expect = 8.4e-58, P = 8.4e-58
 Identities = 136/346 (39%), Positives = 187/346 (54%)

Query:    80 SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSE 139
             SKRD YE+LGV  +AS+ +IKKA+  LA +YHPD N  +  A  KF+E+++AYE L D++
Sbjct:     2 SKRDFYEVLGVGRDASERDIKKAYKRLAMKYHPDRNSGDAGAAEKFKEVKEAYEILTDAQ 61

Query:   140 KRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFEDETS 199
             K+A YD+      E     AG   GF   G   G        F D F  +F +IF     
Sbjct:    62 KKAAYDQYGHAAFEQ---GAG---GFGGGGFGGG-----GADFGDIFGDVFGDIFGGGRR 110

Query:   200 HFAP------DIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCR 253
                P      D++  + LS  EA +GC+K +     V CD+C G G       + C TC 
Sbjct:   111 GGGPRAQRGSDLRYNMELSLEEAVRGCSKEIEVPTLVHCDACDGSGAKKGTSAQTCGTCH 170

Query:   254 GIGRVTIPP--FT--STCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDT 309
             G G+V +    F    TC TC G G+IIKD C  C G G     K + V IPAGVD+GD 
Sbjct:   171 GHGQVQMRQGFFAVQQTCPTCHGKGKIIKDPCNVCHGQGRKQKTKTLNVKIPAGVDTGDR 230

Query:   310 IRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTL 369
             IR+   G AG  G   G+L++++ V +  IF RDG ++Y +  +SF  A LGG+V+VPTL
Sbjct:   231 IRLSGEGEAGEMGAPAGDLYVQVHVKEHHIFERDGNNLYCEVPVSFAMAALGGEVEVPTL 290

Query:   370 SGKVQVKIPKGVQPGQLLVLRGKGLAKNGLFLDHGDQYVRFRVNFP 415
              G+V +K+P   Q G++  +RGKG+ K       GD  V+  V  P
Sbjct:   291 DGRVSLKVPAETQTGRMFRMRGKGV-KGVRSAALGDLIVKLVVETP 335

GO:0006457 "protein folding" evidence=ISS

TIGR_CMR|BA_4538 BA_4538 "chaperone protein dnaJ" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 591 (213.1 bits), Expect = 1.7e-57, P = 1.7e-57
 Identities = 137/345 (39%), Positives = 189/345 (54%)

Query:    80 SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSE 139
             SKRD YE+LG+ + AS+DEIKKA+  LAK+YHPD +K   +A  KF+E+++AYE L D +
Sbjct:     2 SKRDYYEVLGLSKGASKDEIKKAYRRLAKKYHPDVSKEE-NAIEKFKEVQEAYEVLSDDQ 60

Query:   140 KRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFEDETS 199
             KRAQYD+    G+ N+ +      GF   GD  G  + ++  FS  F        +    
Sbjct:    61 KRAQYDQFGHAGA-NQGFG-----GFGGGGDFGG-GFGFEDIFSSFFGGGGGRRRDPNAP 113

Query:   200 HFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGIGRVT 259
                 D+Q ++ L F EA  G   +V      PCD+C G G       + C  C G G+V+
Sbjct:   114 RQGADLQYQVTLEFEEAIFGKELNVEIPVEDPCDTCKGSGAKPGTSKETCKHCSGSGQVS 173

Query:   260 IP---PF-----TSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDTIR 311
             +    PF        CS C G G++IK+ C TC GSG V   K++ V IPAG+D+G  IR
Sbjct:   174 VEQNTPFGRIVNRQACSHCSGTGQMIKEKCTTCHGSGKVRKRKKINVKIPAGIDNGQQIR 233

Query:   312 VPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSG 371
             V   G AG  G   G+L++ + V     F R+G  +  +  ++F Q  LG +V+VPT+ G
Sbjct:   234 VSGKGEAGVNGGPAGDLYVVVHVRSHEFFEREGDHIICEMPLTFAQMALGAEVEVPTVHG 293

Query:   372 KVQVKIPKGVQPGQLLVLRGKGLAKNGLFLDHGDQYVRFRVNFPT 416
             KV++KIP G Q G    L+GKG A N      GDQYV  RV  PT
Sbjct:   294 KVKLKIPAGTQTGTEFRLKGKG-APNVRGYGQGDQYVVVRVVVPT 337

GO:0009408 "response to heat" evidence=ISS

UNIPROTKB|P08622 dnaJ [Escherichia coli K-12 (taxid:83333)]

 Score = 588 (212.0 bits), Expect = 3.6e-57, P = 3.6e-57
 Identities = 132/344 (38%), Positives = 194/344 (56%)

Query:    80 SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSE 139
             +K+D YE+LGV + A + EI+KA+  LA +YHPD N+ +  A+ KF+EI++AYE L DS+
Sbjct:     2 AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQ 61

Query:   140 KRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFED--- 196
             KRA YD+    G  +  +  G   G  + G A+         FSD F  +F +IF     
Sbjct:    62 KRAAYDQY---G--HAAFEQGGMGGGGFGGGAD---------FSDIFGDVFGDIFGGGRG 107

Query:   197 -ETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGI 255
              + +    D++  + L+  EA +G TK +       CD CHG G     + + C TC G 
Sbjct:   108 RQRAARGADLRYNMELTLEEAVRGVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGS 167

Query:   256 GRVTIPP--FT--STCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDTIR 311
             G+V +    F    TC  C+G G +IKD C  C G G V+  K + V IPAGVD+GD IR
Sbjct:   168 GQVQMRQGFFAVQQTCPHCQGRGTLIKDPCNKCHGHGRVERSKTLSVKIPAGVDTGDRIR 227

Query:   312 VPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSG 371
             +   G AG  G   G+L+++++V   PIF R+G ++Y +  I+F  A LGG+++VPTL G
Sbjct:   228 LAGEGEAGEHGAPAGDLYVQVQVKQHPIFEREGNNLYCEVPINFAMAALGGEIEVPTLDG 287

Query:   372 KVQVKIPKGVQPGQLLVLRGKGLAKNGLFLDHGDQYVRFRVNFP 415
             +V++K+P   Q G+L  +RGKG+ K+      GD   R  V  P
Sbjct:   288 RVKLKVPGETQTGKLFRMRGKGV-KSVRGGAQGDLLCRVVVETP 330

GO:0003756 "protein disulfide isomerase activity" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IDA;IMP

GO:0006457 "protein folding" evidence=IDA

GO:0042026 "protein refolding" evidence=IDA

GO:0051082 "unfolded protein binding" evidence=IEA;IDA

GO:0016020 "membrane" evidence=IDA

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0006260 "DNA replication" evidence=IEA;IMP

GO:0009408 "response to heat" evidence=IEA;IEP

GO:0046872 "metal ion binding" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0043335 "protein unfolding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

TIGR_CMR|SO_1127 SO_1127 "chaperone protein DnaJ" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 587 (211.7 bits), Expect = 4.6e-57, P = 4.6e-57
 Identities = 132/326 (40%), Positives = 183/326 (56%)

Query:    80 SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSE 139
             SKRD YE+LGV  +AS+ EIKKA+  LA ++HPD N  + +A+  F+E+++AYE L D+ 
Sbjct:     2 SKRDYYEVLGVGRDASEREIKKAYKRLAMKFHPDRNPGDKAAEASFKEVKEAYEILTDAN 61

Query:   140 KRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFE---- 195
             K+A YD+    G +  +   G   G+  AGD           F D F  +F +IF     
Sbjct:    62 KKAAYDQFGHAGVDPNRGGGG---GYGGAGD-----------FGDIFGDVFGDIFGGGRR 107

Query:   196 ---DETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTC 252
                   +    D++  L LS  EA KG TK +       CD C G G         C+TC
Sbjct:   108 GGGQRQAARGSDLRYNLELSLEEAVKGLTKELRIPTLASCDVCDGSGAKKGTSATTCTTC 167

Query:   253 RGIGRVTIPP--FT--STCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGD 308
              G G+V +    FT    C TC G G+IIKD C  C G G V+  K + V IPAGVD+GD
Sbjct:   168 HGQGQVQMRQGFFTVQQPCPTCHGRGKIIKDPCAKCHGDGRVEKTKTLSVKIPAGVDTGD 227

Query:   309 TIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPT 368
              IR+   G AG  G   G+L++++ V +  IF RDG ++Y +  ISF++A LGG+++VPT
Sbjct:   228 RIRLAGEGEAGEFGAPAGDLYVQVSVREHAIFVRDGNNLYCEVPISFSKAALGGEIEVPT 287

Query:   369 LSGKVQVKIPKGVQPGQLLVLRGKGL 394
             L GKV +KIP   Q G++  LRGKG+
Sbjct:   288 LDGKVSLKIPAETQTGRMFRLRGKGV 313

GO:0009408 "response to heat" evidence=ISS

TIGR_CMR|SPO_0044 SPO_0044 "chaperone protein DnaJ" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 574 (207.1 bits), Expect = 1.1e-55, P = 1.1e-55
 Identities = 134/349 (38%), Positives = 196/349 (56%)

Query:    80 SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSE 139
             SKRD Y++LGV + AS DEIKKA+   AK+ HPD NK+NP A+  F+E+ +AYE L+D+E
Sbjct:     2 SKRDYYDVLGVSKGASADEIKKAYRGKAKELHPDRNKDNPDAESLFKEVNEAYEVLKDAE 61

Query:   140 KRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYA-YQTHFSDSFHKIFSEIFEDET 198
             K+A YDR    G  +  +  G   G R  G   GF    + + FSD F  +F +    + 
Sbjct:    62 KKAAYDRF---G--HAAFEGGMGGGQRPGG---GFGSGDFSSAFSDVFEDLFGDFMGGQR 113

Query:   199 ------SHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTC 252
                   +    D++  L ++  EA  G  K ++    V C SC G G     +   C TC
Sbjct:   114 GGGGRRAARGSDLRYNLRVTLEEAFSGLQKTINVPTAVACSSCEGTGAEGGVEPTTCPTC 173

Query:   253 RGIGRVTIPP--FT--STCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGD 308
              G+G+V      FT   TC TC GLG+IIK+ C +C+G G V+  + + V IPAGV++G 
Sbjct:   174 SGMGKVRAQQGFFTVERTCPTCSGLGQIIKNPCKSCRGQGRVEKDRALSVNIPAGVETGT 233

Query:   309 TIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPT 368
              IR+   G AG RG   G+L+I ++VA   +F RDG ++Y    +S  +A LGG ++VPT
Sbjct:   234 RIRLAGEGEAGMRGGPPGDLYIFVEVAKHELFERDGVNLYCRVPVSMAKAALGGAIEVPT 293

Query:   369 LSG-KVQVKIPKGVQPGQLLVLRGKGL-AKNGLFLDHGDQYVRFRVNFP 415
             + G + +V++P G Q G+ + LR KG+ A  G  +  GD ++   V  P
Sbjct:   294 IDGGRGRVQVPAGSQSGRQMRLRSKGMPALRGGGI--GDMFIELAVETP 340

GO:0009408 "response to heat" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q38813	DNAJ1_ARATH	No assigned EC number	0.6288	0.7767	0.8529	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	448
TIGR02349	354	TIGR02349, DnaJ_bact, chaperone protein DnaJ	1e-115
COG0484	371	COG0484, DnaJ, DnaJ-class molecular chaperone with	1e-114
PRK10767	371	PRK10767, PRK10767, chaperone protein DnaJ; Provis	1e-107
PRK14277	386	PRK14277, PRK14277, chaperone protein DnaJ; Provis	2e-92
PRK14280	376	PRK14280, PRK14280, chaperone protein DnaJ; Provis	6e-90
PRK14276	380	PRK14276, PRK14276, chaperone protein DnaJ; Provis	4e-86
PRK14301	373	PRK14301, PRK14301, chaperone protein DnaJ; Provis	5e-85
PRK14293	374	PRK14293, PRK14293, chaperone protein DnaJ; Provis	6e-84
PRK14291	382	PRK14291, PRK14291, chaperone protein DnaJ; Provis	8e-83
PRK14297	380	PRK14297, PRK14297, chaperone protein DnaJ; Provis	1e-82
PRK14298	377	PRK14298, PRK14298, chaperone protein DnaJ; Provis	4e-74
PRK14294	366	PRK14294, PRK14294, chaperone protein DnaJ; Provis	1e-73
PRK14279	392	PRK14279, PRK14279, chaperone protein DnaJ; Provis	2e-72
PRK14282	369	PRK14282, PRK14282, chaperone protein DnaJ; Provis	2e-72
PRK14295	389	PRK14295, PRK14295, chaperone protein DnaJ; Provis	6e-72
PRK14281	397	PRK14281, PRK14281, chaperone protein DnaJ; Provis	9e-72
PRK14289	386	PRK14289, PRK14289, chaperone protein DnaJ; Provis	3e-71
PRK14283	378	PRK14283, PRK14283, chaperone protein DnaJ; Provis	5e-70
PRK14287	371	PRK14287, PRK14287, chaperone protein DnaJ; Provis	5e-69
PRK14300	372	PRK14300, PRK14300, chaperone protein DnaJ; Provis	2e-64
PRK14284	391	PRK14284, PRK14284, chaperone protein DnaJ; Provis	3e-64
PRK14286	372	PRK14286, PRK14286, chaperone protein DnaJ; Provis	6e-63
PRK14296	372	PRK14296, PRK14296, chaperone protein DnaJ; Provis	1e-62
PRK14290	365	PRK14290, PRK14290, chaperone protein DnaJ; Provis	4e-61
PRK14278	378	PRK14278, PRK14278, chaperone protein DnaJ; Provis	5e-61
PRK14292	371	PRK14292, PRK14292, chaperone protein DnaJ; Provis	3e-60
PRK14285	365	PRK14285, PRK14285, chaperone protein DnaJ; Provis	2e-59
cd10747	158	cd10747, DnaJ_C, C-terminal substrate binding doma	3e-50
PRK14288	369	PRK14288, PRK14288, chaperone protein DnaJ; Provis	1e-49
PTZ00037	421	PTZ00037, PTZ00037, DnaJ_C chaperone protein; Prov	2e-39
PRK10266	306	PRK10266, PRK10266, curved DNA-binding protein Cbp	6e-35
pfam00226	63	pfam00226, DnaJ, DnaJ domain	9e-30
cd06257	55	cd06257, DnaJ, DnaJ domain or J-domain	1e-23
PRK14299	291	PRK14299, PRK14299, chaperone protein DnaJ; Provis	1e-23
smart00271	60	smart00271, DnaJ, DnaJ molecular chaperone homolog	3e-23
pfam01556	81	pfam01556, DnaJ_C, DnaJ C terminal domain	1e-22
PRK14299	291	PRK14299, PRK14299, chaperone protein DnaJ; Provis	6e-21
COG2214	237	COG2214, CbpA, DnaJ-class molecular chaperone [Pos	9e-19
TIGR03835	871	TIGR03835, termin_org_DnaJ, terminal organelle ass	3e-18
cd10719	65	cd10719, DnaJ_zf, Zinc finger domain of DnaJ and H	9e-18
pfam00684	65	pfam00684, DnaJ_CXXCXGXG, DnaJ central domain	1e-13
PRK09430	267	PRK09430, djlA, Dna-J like membrane chaperone prot	1e-08
COG5407	610	COG5407, SEC63, Preprotein translocase subunit Sec	2e-08
COG1076	174	COG1076, DjlA, DnaJ-domain-containing proteins 1 [	1e-06
cd10747	158	cd10747, DnaJ_C, C-terminal substrate binding doma	2e-06
PTZ00341	1136	PTZ00341, PTZ00341, Ring-infected erythrocyte surf	2e-06
TIGR00714	155	TIGR00714, hscB, Fe-S protein assembly co-chaperon	9e-06
PRK01356	166	PRK01356, hscB, co-chaperone HscB; Provisional	1e-05
pfam01556	81	pfam01556, DnaJ_C, DnaJ C terminal domain	2e-05
PRK03578	176	PRK03578, hscB, co-chaperone HscB; Provisional	8e-05
COG5269	379	COG5269, ZUO1, Ribosome-associated chaperone zuoti	6e-04
TIGR03835	871	TIGR03835, termin_org_DnaJ, terminal organelle ass	0.001
PRK05014	171	PRK05014, hscB, co-chaperone HscB; Provisional	0.001
PLN03165	111	PLN03165, PLN03165, chaperone protein dnaJ-related	0.002
COG1076	174	COG1076, DjlA, DnaJ-domain-containing proteins 1 [	0.004

>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ

 Score =  340 bits (874), Expect = e-115
 Identities = 146/354 (41%), Positives = 191/354 (53%), Gaps = 37/354 (10%)

Query: 83  DPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRA 142
           D YE+LGV ++AS++EIKKA+  LAK+YHPD NK+   A+ KF+EI +AYE L D EKRA
Sbjct: 1   DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKD-KEAEEKFKEINEAYEVLSDPEKRA 59

Query: 143 QYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFED------ 196
           QYD+    G            G    G   GF       F   F  IF + F        
Sbjct: 60  QYDQFGHAGFNGG--------GGGGGGGFNGF----DIGFFGDFGDIFGDFFGGGGGSGR 107

Query: 197 ---ETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCR 253
                     D++ +L L+F EA  G  K +       C++CHG G       K C TC 
Sbjct: 108 RRRSGPRRGEDLRYDLELTFEEAVFGVEKEIEIPRKESCETCHGTGAKPGTDPKTCPTCG 167

Query: 254 GIGRVTI---PPF-----TSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVD 305
           G G+V      PF       TC TC G G+IIK+ C TCKG G V   K + V IPAGVD
Sbjct: 168 GTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIKEPCSTCKGKGRVKERKTITVKIPAGVD 227

Query: 306 SGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVD 365
           +G  +RV   GNAG  G  +G+L++ ++V    IF RDG D+Y++  ISFTQAILGG+++
Sbjct: 228 TGQRLRVSGKGNAGENGGPNGDLYVVIRVKPHKIFERDGNDLYIEVPISFTQAILGGEIE 287

Query: 366 VPTLSGKVQVKIPKGVQPGQLLVLRGKGLAK---NGLFLDHGDQYVRFRVNFPT 416
           VPTL G V++KIP G Q G +  L+GKG+ +   NG     GD  V  +V  P 
Sbjct: 288 VPTLDGDVKLKIPAGTQSGTVFRLKGKGVPRLRGNG----RGDLLVTVKVETPK 337

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family. Length = 354

>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

 Score =  339 bits (872), Expect = e-114
 Identities = 146/354 (41%), Positives = 187/354 (52%), Gaps = 38/354 (10%)

Query: 80  SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSE 139
           +KRD YE+LGV ++AS++EIKKA+  LAK+YHPD N  +  A+ KF+EI +AYE L D E
Sbjct: 2   AKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPE 61

Query: 140 KRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFEDETS 199
           KRA YD+    G    K       GF                F   F  IF + F     
Sbjct: 62  KRAAYDQF---GHAGFKAGGFGGFGF--------------GGFGGDFGDIFEDFFGGGGG 104

Query: 200 HFAP--------DIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICST 251
                       D++  L ++  EA  G  K +     V C +CHG G       K C T
Sbjct: 105 GRRRPNRPRRGADLRYNLEITLEEAVFGVKKEIRVTRSVTCSTCHGSGAKPGTDPKTCPT 164

Query: 252 CRGIGRVTI---PPFTS---TCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVD 305
           C G G+V       F S   TC TC G G+IIKD C  CKG G V   K + V IPAGVD
Sbjct: 165 CNGSGQVRTVQRTGFFSFQQTCPTCNGTGKIIKDPCGKCKGKGRVKKKKSISVNIPAGVD 224

Query: 306 SGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVD 365
            GD IR+   G AG  G   G+L++ + V   PIF RDG D+Y +  ISFT+A LGG+++
Sbjct: 225 DGDRIRLSGEGEAGPNGGPAGDLYVFVHVKPHPIFERDGDDLYCEVPISFTEAALGGEIE 284

Query: 366 VPTLSGKVQVKIPKGVQPGQLLVLRGKGLAK---NGLFLDHGDQYVRFRVNFPT 416
           VPTL G+V++KIP G Q G++  LRGKG+ K    G     GD YVR +V  P 
Sbjct: 285 VPTLDGRVKLKIPAGTQTGEVFRLRGKGMPKLRSGG----RGDLYVRVKVETPK 334

Length = 371

>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional

 Score =  322 bits (829), Expect = e-107
 Identities = 150/349 (42%), Positives = 198/349 (56%), Gaps = 30/349 (8%)

Query: 80  SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSE 139
           +KRD YE+LGV  NAS+DEIKKA+  LA +YHPD N  +  A+ KF+EI++AYE L D +
Sbjct: 2   AKRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQ 61

Query: 140 KRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFEDETS 199
           KRA YD+          Y  G A  F   G   GF       F D F  IF +IF     
Sbjct: 62  KRAAYDQ----------Y--GHA-AFEQGGGGGGF--GGGGGFGDIFGDIFGDIFGGGRG 106

Query: 200 HFAP------DIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCR 253
                     D++  + ++  EA +G TK +     V CD+CHG G       K C TC 
Sbjct: 107 GGRQRARRGADLRYNMEITLEEAVRGVTKEIRIPTLVTCDTCHGSGAKPGTSPKTCPTCH 166

Query: 254 GIGRVTIPP--FT--STCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDT 309
           G G+V +    FT   TC TC G G+IIKD C  C G G V+  K + V IPAGVD+GD 
Sbjct: 167 GAGQVRMQQGFFTVQQTCPTCHGRGKIIKDPCKKCHGQGRVEKEKTLSVKIPAGVDTGDR 226

Query: 310 IRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTL 369
           IR+   G AG RG   G+L++++ V + PIF RDG D+Y +  ISFT A LGG+++VPTL
Sbjct: 227 IRLSGEGEAGERGGPAGDLYVQIHVKEHPIFERDGNDLYCEVPISFTTAALGGEIEVPTL 286

Query: 370 SGKVQVKIPKGVQPGQLLVLRGKGLA--KNGLFLDHGDQYVRFRVNFPT 416
            G+V++KIP+G Q G+L  LRGKG+   ++G     GD Y +  V  P 
Sbjct: 287 DGRVKLKIPEGTQTGKLFRLRGKGVKSVRSG---ARGDLYCQVVVETPV 332

Length = 371

>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional

 Score =  284 bits (729), Expect = 2e-92
 Identities = 139/352 (39%), Positives = 190/352 (53%), Gaps = 24/352 (6%)

Query: 81  KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEK 140
           K+D YE+LGV  NA+++EIKKA+  LAK+YHPD N  +  A++KF+EI +AYE L D +K
Sbjct: 4   KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQK 63

Query: 141 RAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFEDETS- 199
           RAQYD+      +   +  G   GF   G   G        F D F  IF + F      
Sbjct: 64  RAQYDQFGHAAFDPGGFGQG---GFGQGGFGGGGFDFDFGGFGDIFEDIFGDFFGTGRRR 120

Query: 200 -HFAP----DIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRG 254
               P    DI+ +L L+F EAA G  K +  + F  CD C G G    +K   C  C G
Sbjct: 121 AETGPQKGADIRYDLELTFEEAAFGTEKEIEVERFEKCDVCKGSGAKPGSKPVTCPVCHG 180

Query: 255 IGRVTI---PPF-----TSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDS 306
            G+V      PF       TC  C G G+II D C  C G+G +   +++KV IPAG+D 
Sbjct: 181 TGQVRTRQNTPFGRIVNIRTCDRCHGEGKIITDPCNKCGGTGRIRRRRKIKVNIPAGIDD 240

Query: 307 GDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDV 366
           G  I +   G  G +G  +G+L+I +KV   P+F R+G +VY++  I+FT A LGG++++
Sbjct: 241 GQMITLRGEGEPGIKGGPNGDLYIVIKVKPHPLFKREGYNVYLEMPITFTDAALGGEIEI 300

Query: 367 PTLSGKVQVKIPKGVQPGQLLVLRGKG---LAKNGLFLDHGDQYVRFRVNFP 415
           PTL GKV+  IP+G Q G    LRGKG   L   G     GDQ V+  +  P
Sbjct: 301 PTLDGKVKFTIPEGTQTGTKFRLRGKGIPHLRGRG----RGDQIVKVYIEVP 348

Length = 386

>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional

 Score =  277 bits (711), Expect = 6e-90
 Identities = 143/352 (40%), Positives = 186/352 (52%), Gaps = 31/352 (8%)

Query: 80  SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSE 139
           +KRD YE+LGV ++AS+DEIKKA+  L+K+YHPD NK    A  KF+EI +AYE L D +
Sbjct: 2   AKRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKE-EGADEKFKEISEAYEVLSDDQ 60

Query: 140 KRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFEDETS 199
           KRAQYD+    G  N+ +  G   G  + G   GF           F  IFS  F     
Sbjct: 61  KRAQYDQFGHAGP-NQGFGGGGFGGGDFGG---GF----------GFEDIFSSFFGGGGR 106

Query: 200 HFAP-------DIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTC 252
              P       D+Q  + L+F EA  G  K +       CD+CHG G       + CS C
Sbjct: 107 RRDPNAPRQGADLQYTMTLTFEEAVFGKEKEIEIPKEETCDTCHGSGAKPGTSKETCSHC 166

Query: 253 RGIGRVTIPPFT--------STCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGV 304
            G G+V++   T         TC  C G G+ IK+ C TC G G V   K++ V IPAGV
Sbjct: 167 GGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIKEKCPTCHGKGKVRKRKKINVKIPAGV 226

Query: 305 DSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKV 364
           D+G  IRV   G  G  G   G+L++  +V     F RDG D+Y +  ++F QA LG ++
Sbjct: 227 DNGQQIRVSGEGEPGVNGGPAGDLYVVFRVRPHEFFERDGDDIYCEMPLTFAQAALGDEI 286

Query: 365 DVPTLSGKVQVKIPKGVQPGQLLVLRGKGLAKNGLFLDHGDQYVRFRVNFPT 416
           +VPTL GKV++KIP G Q G    L+GKG   N      GDQYV  RV  PT
Sbjct: 287 EVPTLHGKVKLKIPAGTQTGTQFRLKGKG-VPNVRGYGQGDQYVVVRVVTPT 337

Length = 376

>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional

 Score =  267 bits (685), Expect = 4e-86
 Identities = 136/354 (38%), Positives = 185/354 (52%), Gaps = 34/354 (9%)

Query: 81  KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEK 140
             + Y+ LGV ++ASQDEIKKA+  L+K+YHPD NK  P A+ K++E+++AYETL D +K
Sbjct: 3   NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKE-PGAEEKYKEVQEAYETLSDPQK 61

Query: 141 RAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFEDETSH 200
           RA YD+  + G+ N  +  G A GF     + GF           F  IFS  F    + 
Sbjct: 62  RAAYDQYGAAGA-NGGF-GGGAGGFGGFDGSGGF---------GGFEDIFSSFFGGGGAR 110

Query: 201 FAP-------DIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCR 253
             P       D+Q  + L F EA  G  K VS++    C +C+G G         C  C 
Sbjct: 111 RNPNAPRQGDDLQYRVNLDFEEAIFGKEKEVSYNREATCHTCNGSGAKPGTSPVTCGKCH 170

Query: 254 GIGRVTIPPFT--------STCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVD 305
           G G +T+   T         TC  C G G+ IK+ C TC G+G       V V IPAGV+
Sbjct: 171 GSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIKEPCQTCHGTGHEKQAHTVSVKIPAGVE 230

Query: 306 SGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVD 365
           +G  IR+   G AG  G  +G+L++  +V     F RDG+ +Y    ISF QA LG  V+
Sbjct: 231 TGQQIRLQGQGEAGFNGGPYGDLYVVFRVEPSKKFERDGSTIYYTLPISFVQAALGDTVE 290

Query: 366 VPTLSGKVQVKIPKGVQPGQLLVLRGKGLAK---NGLFLDHGDQYVRFRVNFPT 416
           VPT+ G V++KIP G Q G+   LRGKG  K    G    +GDQ+V   +  PT
Sbjct: 291 VPTVHGDVELKIPAGTQTGKKFRLRGKGAPKLRGGG----NGDQHVTVNIVTPT 340

Length = 380

>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional

 Score =  265 bits (678), Expect = 5e-85
 Identities = 146/347 (42%), Positives = 185/347 (53%), Gaps = 24/347 (6%)

Query: 80  SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSE 139
           S+RD YE+LGV  +AS+DEIKKA+  LA QYHPD N +NP A++KF+E  +AYE LRD+E
Sbjct: 2   SQRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAE 61

Query: 140 KRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFEDETS 199
           KRA+YDR    G        G   GF  A D          HFSD F  +F   F    S
Sbjct: 62  KRARYDRFGHAGVNGN----GGFGGFSSAEDIFS-------HFSDIFGDLFG--FSGGGS 108

Query: 200 HFAP------DIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCR 253
              P      D++  L +SF +AAKG    +     V CD C G G       + C  C 
Sbjct: 109 RRGPRPQAGSDLRYNLTVSFRQAAKGDEVTLRIPKNVTCDDCGGSGAAPGTSPETCRHCG 168

Query: 254 GIGRVTIPP----FTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDT 309
           G G+V            C  C+G GR+I   C  CKGSG+V   +E+KV IPAGVD+G  
Sbjct: 169 GSGQVRQSQGFFQIAVPCPVCRGEGRVITHPCPKCKGSGIVQQTRELKVRIPAGVDTGSR 228

Query: 310 IRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTL 369
           +R+   G  G  G   G+L++ + V DD IF R G D+ V   ISF QA LG +++VPTL
Sbjct: 229 LRLRGEGEPGVHGGPPGDLYVVITVEDDKIFQRQGQDLVVTQEISFVQAALGDRIEVPTL 288

Query: 370 SGKVQVKIPKGVQPGQLLVLRGKGLAKNGLFLDHGDQYVRFRVNFPT 416
              V + IPKG Q G++  LRGKGL   G     GD  V   V  PT
Sbjct: 289 DDPVTLDIPKGTQSGEVFRLRGKGLPYLG-SSQKGDLLVEVSVVTPT 334

Length = 373

>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional

 Score =  262 bits (671), Expect = 6e-84
 Identities = 133/352 (37%), Positives = 181/352 (51%), Gaps = 33/352 (9%)

Query: 82  RDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKR 141
            D YE+LGV  +A +DE+K+A+  LA++YHPD NK  P A+ +F+EI  AYE L D E R
Sbjct: 3   ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKE-PGAEDRFKEINRAYEVLSDPETR 61

Query: 142 AQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFEDETSHF 201
           A+YD+    G          A GF   GD  GF        +D F   FS          
Sbjct: 62  ARYDQFGEAG-------VSGAAGFPDMGDMGGF--------ADIFETFFSGFGGAGGQGG 106

Query: 202 AP---------DIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTC 252
                      D++ +L L F EA  G  K +       C++C G G         CSTC
Sbjct: 107 RRRRRGPQRGDDLRYDLKLDFREAIFGGEKEIRIPHLETCETCRGSGAKPGTGPTTCSTC 166

Query: 253 RGIG---RVTIPPF-----TSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGV 304
            G G   R T  PF      S C TC G G++I+D C  C G GV    K++K+ IPAGV
Sbjct: 167 GGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIEDPCDACGGQGVKQVTKKLKINIPAGV 226

Query: 305 DSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKV 364
           D+G  +RV   G+AG RG   G+L++ L V +DP F RDG ++  +  IS+ QAILG  +
Sbjct: 227 DTGTRLRVSGEGDAGLRGGPPGDLYVYLFVKNDPEFRRDGINILSEIKISYLQAILGDTL 286

Query: 365 DVPTLSGKVQVKIPKGVQPGQLLVLRGKGLAKNGLFLDHGDQYVRFRVNFPT 416
           +V T+ G V++ IP G QP  +L L  KG+ + G  +  GD  +  +V  PT
Sbjct: 287 EVDTVDGPVELTIPAGTQPNTVLTLENKGVPRLGNPVARGDHLITVKVKIPT 338

Length = 374

>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional

 Score =  259 bits (664), Expect = 8e-83
 Identities = 129/360 (35%), Positives = 193/360 (53%), Gaps = 39/360 (10%)

Query: 80  SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSE 139
           +K+D YE+LGV  NA+Q+EIKKA+  LA++YHPD NKN P A+ KF+EI +AY+ L D E
Sbjct: 1   AKKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKN-PEAEEKFKEINEAYQVLSDPE 59

Query: 140 KRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKI-----FSEIF 194
           KR  YD+          +S    +        EGF      +  D    +     F +IF
Sbjct: 60  KRKLYDQFGHAA-----FSGSGQQQQ----GQEGFSDFGGGNIEDILEDVFDIFGFGDIF 110

Query: 195 EDETS-------HFAP----DIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPAD 243
               +       +  P    DI   + +S  EA  G T  +    +VPC++C G G+   
Sbjct: 111 GRRRATRERRKTYQRPVKGEDIYQTVEISLEEAYTGTTVSLEVPRYVPCEACGGTGYDPG 170

Query: 244 AKTKICSTCRGIGRVTIPPF----TSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVT 299
           +  K+C TC G G +         + TC TC G G ++++ C  C G G+V   + +KV 
Sbjct: 171 SGEKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEG-VLREPCSKCNGRGLVIKKETIKVR 229

Query: 300 IPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAI 359
           IP GVD+G  +RVP  G+AG  G   G+L+I +KV   P+F R G ++Y+D NI+  +A+
Sbjct: 230 IPPGVDNGSKLRVPGKGHAGRFGGPPGDLYIIVKVKPHPLFERRGDNLYLDVNITVAEAV 289

Query: 360 LGGKVDVPTLSG-KVQVKIPKGVQPGQLLVLRGKGLAK---NGLFLDHGDQYVRFRVNFP 415
           LG +++VP L G K +VKIP G + G  + + GKG+ +   +G    +GD  VR  ++ P
Sbjct: 290 LGTELEVPLLDGKKEKVKIPPGTKEGDKIRVPGKGMPRLKGSG----YGDLVVRVHIDVP 345

Length = 382

>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional

 Score =  259 bits (663), Expect = 1e-82
 Identities = 129/352 (36%), Positives = 188/352 (53%), Gaps = 28/352 (7%)

Query: 80  SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSE 139
           + +D YE+LG+ + AS DEIKKAF  LA +YHPD NK N  A+ KF+EI +AY+ L D +
Sbjct: 2   ASKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQ 61

Query: 140 KRAQYDRRRSRGSENEKYSAGDAEGFRYAGDA--EGFRYAYQTHFSDSFHKIFSEIFEDE 197
           K+AQYD+          +   D  G    G     GF ++    F D F   F   F   
Sbjct: 62  KKAQYDQ----------FGTADFNGAGGFGSGGFGGFDFSDMGGFGDIFDSFFGGGFGSS 111

Query: 198 TS-----HFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTC 252
           +          DI+  + L+F EA  G  K +S      C++C+G G       K C  C
Sbjct: 112 SRRRNGPQRGADIEYTINLTFEEAVFGVEKEISVTRNENCETCNGTGAKPGTSPKTCDKC 171

Query: 253 RGIGRVTI---PPF-----TSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGV 304
            G G++ +    P      T+TC  C G G++I+D C  C G G V   +++KV +PAGV
Sbjct: 172 GGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIEDPCNKCHGKGKVRKNRKIKVNVPAGV 231

Query: 305 DSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKV 364
           D+G+ I +   G  G  G   G+L+I ++VA    F R G D+Y+D +ISF +A LG ++
Sbjct: 232 DTGNVIPLRGQGEHGKNGGPTGDLYINIRVAPHKTFKRKGFDIYIDKHISFAKAALGTEI 291

Query: 365 DVPTLSGKVQVKIPKGVQPGQLLVLRGKGLAK-NGLFLDHGDQYVRFRVNFP 415
            VPT+ G+V+ ++P G QPG +  L+GKG+ + N      G+QYV   V+ P
Sbjct: 292 KVPTVDGEVKYEVPAGTQPGTVFRLKGKGVPRVNS--TGRGNQYVTVIVDIP 341

Length = 380

>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional

 Score =  237 bits (605), Expect = 4e-74
 Identities = 136/351 (38%), Positives = 187/351 (53%), Gaps = 30/351 (8%)

Query: 79  SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDS 138
           ++ RD YE+LG+ ++AS ++IKKA+  LA +YHPD NK  P A+ KF+EI +AY  L D+
Sbjct: 2   ATTRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKE-PDAEEKFKEISEAYAVLSDA 60

Query: 139 EKRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFEDET 198
           EKRAQYDR    G +N +YSA D            FR A    F D F   F        
Sbjct: 61  EKRAQYDRFGHAGIDN-QYSAEDI-----------FRGADFGGFGDIFEMFFGG--GGRR 106

Query: 199 SHFAP----DIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRG 254
               P    D++ +L ++  EAA G  K +       C +C G G       K C TC G
Sbjct: 107 GRMGPRRGSDLRYDLYITLEEAAFGVRKDIDVPRAERCSTCSGTGAKPGTSPKRCPTCGG 166

Query: 255 IGRVT------IPPF--TSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDS 306
            G+VT      +  F  T+TCSTC G G++I+  C  C G+G V   +++ V +PAG DS
Sbjct: 167 TGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIESPCPVCSGTGKVRKTRKITVNVPAGADS 226

Query: 307 GDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDV 366
           G  +++   G AG  G   G+L+I L V +   F R G D+  +  ISFTQA LG  + V
Sbjct: 227 GLRLKLSGEGEAGSPGAPSGDLYIVLHVKEHDYFERVGDDIISEIPISFTQAALGADIMV 286

Query: 367 PTLSGKVQVKIPKGVQPGQLLVLRGKGLAK-NGLFLDHGDQYVRFRVNFPT 416
           PTL GKV++ IP G Q   +  L+ KG+ + +G     GDQ V+  V  PT
Sbjct: 287 PTLYGKVKMNIPPGTQTHSVFRLKDKGMPRLHG--HGKGDQLVKVIVKTPT 335

Length = 377

>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional

 Score =  235 bits (601), Expect = 1e-73
 Identities = 136/354 (38%), Positives = 181/354 (51%), Gaps = 36/354 (10%)

Query: 79  SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDS 138
             KRD YE+LGV  +AS++EIKK++  LA +YHPD N  +  A+  F+E  +AYE L D 
Sbjct: 1   MVKRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDP 60

Query: 139 EKRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFEDET 198
           +KR  YD+    G     +S     GF    D           FS SF  IF + F    
Sbjct: 61  KKRGIYDQYGHEGLSGTGFS-----GFSGFDDI----------FS-SFGDIFEDFFGFGG 104

Query: 199 -----SHFAP----DIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKIC 249
                S  A     D++ +L L F EAA G  K +       C+ CHG G         C
Sbjct: 105 GRRGRSRTAVRAGADLRYDLTLPFLEAAFGTEKEIRIQKLETCEECHGSGCEPGTSPTTC 164

Query: 250 STCRGIGRVTIPP--FT--STCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVD 305
             C G G+VT     F+  +TC  C+G+G++I   C TC G G V   K V+V IPAGVD
Sbjct: 165 PQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVIVSPCKTCHGQGRVRVSKTVQVKIPAGVD 224

Query: 306 SGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVD 365
           +G  +R+   G AG RG   G+L++ L V     F RDG DV+    ISF QA LG +++
Sbjct: 225 TGSRLRLRGEGEAGVRGGPPGDLYVFLTVEPHEFFERDGNDVHCKVPISFVQAALGAQIE 284

Query: 366 VPTLSGKVQVKIPKGVQPGQLLVLRGKGLAK---NGLFLDHGDQYVRFRVNFPT 416
           VPTL G+ ++KIPKG QPG +   +GKG+      G     GDQ +   V  PT
Sbjct: 285 VPTLEGERELKIPKGTQPGDIFRFKGKGIPSLRGGG----RGDQIIEVEVKVPT 334

Length = 366

>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional

 Score =  233 bits (595), Expect = 2e-72
 Identities = 126/361 (34%), Positives = 180/361 (49%), Gaps = 35/361 (9%)

Query: 82  RDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKR 141
           +D Y+ LGV  +AS +EIKKA+  LA++ HPDAN  +P+A+ +F+ + +A++ L D  KR
Sbjct: 9   KDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKR 68

Query: 142 AQYDRRRS-----RGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHK-------- 188
            +YD  R                G   GF   GD   F      + +D F          
Sbjct: 69  KEYDETRRLFAGGGFGGRRFDGGGGFGGFGTGGDGAEF------NLNDLFDAAGRGGGGG 122

Query: 189 ---IFSEIFEDETSHFAP-------DIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGR 238
              +F  +F        P       D++ E  L F EAAKG T  +   +  PC +CHG 
Sbjct: 123 IGDLFGGLFNRGGGSARPSRPRRGNDLETETTLDFVEAAKGVTMPLRLTSPAPCTTCHGS 182

Query: 239 GFPADAKTKICSTCRGIGRVTIPP----FTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVK 294
           G       K+C TC G G ++       F+  C+ C+G G II+D C  CKG+GV    +
Sbjct: 183 GARPGTSPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSIIEDPCEECKGTGVTTRTR 242

Query: 295 EVKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNIS 354
            + V IP GV+ G  IR+   G AG RG   G+L++ + V  D +F RDG D+ V   +S
Sbjct: 243 TINVRIPPGVEDGQRIRLAGQGEAGLRGAPSGDLYVTVHVRPDKVFGRDGDDLTVTVPVS 302

Query: 355 FTQAILGGKVDVPTLSGKVQVKIPKGVQPGQLLVLRGKGLAKNGLFLDHGDQYVRFRVNF 414
           FT+  LG  + VPTL G V VK+P G   G++L +RG+G+ K       GD  V  +V  
Sbjct: 303 FTELALGSTLSVPTLDGPVGVKVPAGTADGRILRVRGRGVPKRS--GGAGDLLVTVKVAV 360

Query: 415 P 415
           P
Sbjct: 361 P 361

Length = 392

>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional

 Score =  231 bits (592), Expect = 2e-72
 Identities = 123/355 (34%), Positives = 178/355 (50%), Gaps = 29/355 (8%)

Query: 81  KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDAN-KNNPSAKRKFQEIRDAYETLRDSE 139
           K+D YE+LGV  NA+Q+EIK+A+  L K++HPD + +N   A++KF+EI++AYE L D +
Sbjct: 3   KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQ 62

Query: 140 KRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHK-IFSEIFED-- 196
           KRA YDR          Y  G+   ++      GF       F + F++ IF   F +  
Sbjct: 63  KRAMYDRF--------GY-VGEQPPYQETESGGGFFEDIFKDFENIFNRDIFDIFFGERR 113

Query: 197 ------ETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICS 250
                 E +    DI+ E+ ++ ++   G    V +D +  C  C G G    +    C 
Sbjct: 114 TQEEQREYARRGEDIRYEIEVTLSDLINGAEIPVEYDRYETCPHCGGTGVEPGSGYVTCP 173

Query: 251 TCRGIGRV---TIPPF-----TSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPA 302
            C G GR+       F       TC  C G G+I  ++C  C GSG +       V IPA
Sbjct: 174 KCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPGEYCHECGGSGRIRRRVRTTVKIPA 233

Query: 303 GVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGG 362
           GV+ G  +R+   GNAG  G  +G+L++ ++V  DP F R G+D+  D  I + QAILG 
Sbjct: 234 GVEDGTVLRITGGGNAGYYGGPYGDLYVIVRVRPDPRFKRSGSDLIYDVTIDYLQAILGT 293

Query: 363 KVDVPTLSGKV-QVKIPKGVQPGQLLVLRGKGLAKNGLFLDHGDQYVRFRVNFPT 416
            V+VP   G    +KIP G QP  +  L+GKGL  N  +   GD  V   V  P 
Sbjct: 294 TVEVPLPEGGTTMLKIPPGTQPETVFRLKGKGLP-NMRYGRRGDLIVNVHVEIPK 347

Length = 369

>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional

 Score =  231 bits (591), Expect = 6e-72
 Identities = 126/351 (35%), Positives = 180/351 (51%), Gaps = 19/351 (5%)

Query: 81  KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEK 140
           ++D Y++LGVP++A++ EIKKA+  LA++YHPDANK +  A+ +F+EI +AY+ L D +K
Sbjct: 8   EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKK 67

Query: 141 RAQYDRRRS---RGSENEKYSAGDAEGFRY-------AGDAEGFRYAYQTHFSDSFHKIF 190
           R +YD  RS    G        G   GF +        G   G          D F  +F
Sbjct: 68  RKEYDEARSLFGNGGFRPGPGGGGGGGFNFDLGDLFGGGAQGGGGAGGGGGLGDVFGGLF 127

Query: 191 SEIFEDETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICS 250
           +            D++ E+ LSF EA  G T  +   +  PC +C G G       ++C 
Sbjct: 128 NRGGRRTQPRRGADVESEVTLSFTEAIDGATVPLRLTSQAPCPACSGTGAKNGTTPRVCP 187

Query: 251 TCRGIGRVTIP----PFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDS 306
           TC G G+V+        +  C  CKG G I  D C+ CKGSG     + ++V IPAGV  
Sbjct: 188 TCSGTGQVSRNSGGFSLSEPCPDCKGRGLIADDPCLVCKGSGRAKSSRTMQVRIPAGVSD 247

Query: 307 GDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDV 366
           G  IR+   G  G RG   G+L++ + V   P+F R G ++ V   ++F +A LG +V V
Sbjct: 248 GQRIRLRGKGAPGERGGPAGDLYVVVHVDPHPVFGRSGDNLTVTVPVTFPEAALGAEVRV 307

Query: 367 PTLSG-KVQVKIPKGVQPGQLLVLRGKGLA-KNGLFLDHGDQYVRFRVNFP 415
           PTL G  V VK+P G   G++L +RGKG   K+G     GD  V   V  P
Sbjct: 308 PTLGGPPVTVKLPPGTPNGRVLRVRGKGAVRKDG---TRGDLLVTVEVAVP 355

Length = 389

>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional

 Score =  231 bits (591), Expect = 9e-72
 Identities = 135/364 (37%), Positives = 184/364 (50%), Gaps = 37/364 (10%)

Query: 81  KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEK 140
           KRD YE+LGV  +A +DEIKKA+  LA +YHPD N +N  A+  F+E+ +AYE L + +K
Sbjct: 2   KRDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDK 61

Query: 141 RAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSF----------HKIF 190
           R +YD+    G      SA    G  Y G    F   +   F+D F             F
Sbjct: 62  RRRYDQ---FGHAGVGSSAASGGGPGYGGGGGDFNDIFSA-FNDMFGGGARRGGGSPFGF 117

Query: 191 SEIF-----EDETSHFAP--DIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPAD 243
            ++F         S   P  D+++ L L+  E AKG  K +     VPC  C+G G    
Sbjct: 118 EDVFGGGGRRRRASAGIPGTDLKIRLKLTLEEIAKGVEKTLKIKKQVPCKECNGTG-SKT 176

Query: 244 AKTKICSTCRGIGRVTIPPFT--------STCSTCKGLGRIIKDHCMTCKGSGVVDGVKE 295
             T+ C TC G G V     T        + C TC G GR++KD C  C G G+  G   
Sbjct: 177 GATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVKDRCPACYGEGIKQGEVT 236

Query: 296 VKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISF 355
           VKVT+PAGV  G+ + +   GNAG RG   G+L + ++     +F R+G DV  +  +S+
Sbjct: 237 VKVTVPAGVQDGNYLTLRGQGNAGPRGGAPGDLIVVIEEKPHELFVRNGDDVIYNLAVSY 296

Query: 356 TQAILGGKVDVPTLSGKVQVKIPKGVQPGQLLVLRGKG---LAKNGLFLDHGDQYVRFRV 412
              +LG KV+VPTL G V++ IP G QP  +L + GKG   L  +G     GDQYVR  V
Sbjct: 297 PDLVLGTKVEVPTLDGAVKLTIPAGTQPETMLRIPGKGIGHLRGSG----RGDQYVRVNV 352

Query: 413 NFPT 416
             P 
Sbjct: 353 FVPK 356

Length = 397

>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional

 Score =  229 bits (586), Expect = 3e-71
 Identities = 134/366 (36%), Positives = 181/366 (49%), Gaps = 49/366 (13%)

Query: 79  SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDS 138
           + KRD YE+LGV + A+ DEIKKA+   A QYHPD N  +  A+ KF+E  +AY+ L D 
Sbjct: 2   AEKRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDP 61

Query: 139 EKRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFS---EIFE 195
           +KR++YD+    G        G A G  ++G  EG           S   IFS   +IF 
Sbjct: 62  DKRSRYDQFGHAGV------GGAAGGGGFSG--EGM----------SMEDIFSMFGDIFG 103

Query: 196 DETSHFA-----------------PDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGR 238
                F                   D++V++ L+  E + G  K      +VPC  CHG 
Sbjct: 104 GHGGGFGGFGGFGGGGSQQRVFRGSDLRVKVKLNLKEISTGVEKKFKVKKYVPCSHCHGT 163

Query: 239 GFPADAKTKICSTCRGIGRVTIPPFT--------STCSTCKGLGRIIKDHCMTCKGSGVV 290
           G   +  ++ C TC+G G VT    T        STC TC G G+IIK  C  C G G+V
Sbjct: 164 GAEGNNGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIKKKCKKCGGEGIV 223

Query: 291 DGVKEVKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVD 350
            G + + V IPAGV  G  + +   GNAG  G  +G+L + ++    P   RD  D+  +
Sbjct: 224 YGEEVITVKIPAGVAEGMQLSMNGKGNAGKHGGVNGDLLVVIEEEPHPELIRDENDLIYN 283

Query: 351 SNISFTQAILGGKVDVPTLSGKVQVKIPKGVQPGQLLVLRGKGLAK-NGLFLDHGDQYVR 409
             +S   A LGG V+VPT+ GK +VKI  G QPG++L LR KGL   NG     GD  V 
Sbjct: 284 LLLSVPTAALGGAVEVPTIDGKAKVKIEAGTQPGKVLRLRNKGLPSVNG--YGTGDLLVN 341

Query: 410 FRVNFP 415
             V  P
Sbjct: 342 VSVYIP 347

Length = 386

>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional

 Score =  226 bits (577), Expect = 5e-70
 Identities = 130/350 (37%), Positives = 180/350 (51%), Gaps = 29/350 (8%)

Query: 81  KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEK 140
           KRD YE+LGV  NA + EIKKA+  LA++YHPD +     A+ KF+EI +AY  L D EK
Sbjct: 4   KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVS-EEEGAEEKFKEISEAYAVLSDDEK 62

Query: 141 RAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEI-FEDETS 199
           R +YD+    G +   +S  D   F      + F+      F      IF    F   + 
Sbjct: 63  RQRYDQFGHAGMDG--FSQEDI--FNNINFEDIFQ-----GFGFGIGNIFDMFGFGGGSR 113

Query: 200 H---FAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGIG 256
           H      DI  E+ ++  EAA G  K +       C  C+G      ++ K C TC G G
Sbjct: 114 HGPQRGADIYTEVEITLEEAASGVEKDIKVRHTKKCPVCNGSRAEPGSEVKTCPTCGGTG 173

Query: 257 RVTIPPFT--------STCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGD 308
           +V     T        +TC  C+G G+I++  C  C G GVV   K + V IPAGV++G 
Sbjct: 174 QVKQVRNTILGQMMNVTTCPDCQGEGKIVEKPCSNCHGKGVVRETKTISVKIPAGVETGS 233

Query: 309 TIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPT 368
            +RV   G  G RG + G+L++ +KV    IF R+GA++Y +  ISF QA LG  VDVPT
Sbjct: 234 RLRVSGEGEMGDRGGEPGDLYVVIKVKPHKIFRREGANLYYEKPISFVQAALGDTVDVPT 293

Query: 369 LSGKVQVKIPKGVQPGQLLVLRGKG---LAKNGLFLDHGDQYVRFRVNFP 415
           + G V++KIP G Q G    L+G G   L  +G     G+ YV+ +V  P
Sbjct: 294 IDGPVELKIPAGTQSGTTFRLKGHGMPSLRWSG----KGNLYVKVKVVVP 339

Length = 378

>gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional

 Score =  223 bits (570), Expect = 5e-69
 Identities = 133/351 (37%), Positives = 180/351 (51%), Gaps = 36/351 (10%)

Query: 80  SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSE 139
           SKRD YE+LGV  NAS DE+KKA+  LA++YHPD NK  P A+ KF+E+++AY+TL D +
Sbjct: 2   SKRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKA-PDAEDKFKEVKEAYDTLSDPQ 60

Query: 140 KRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFEDETS 199
           K+A YD+       N+ +  G A  F                    F  IF   F     
Sbjct: 61  KKAHYDQF-GHTDPNQGFGGGGAGDF------------------GGFSDIFDMFFGGGGG 101

Query: 200 HFAP-------DIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTC 252
              P       D+Q  + L F EA  G    +       C +CHG G     K + CS C
Sbjct: 102 RRNPNAPRQGADLQYTMTLEFKEAVFGKETEIEIPREETCGTCHGSGAKPGTKPETCSHC 161

Query: 253 RGIGRVTI---PPF-----TSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGV 304
            G G++ +    PF        C  C+G G+IIK  C TC G G V   K++ V +PAG+
Sbjct: 162 GGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIKQKCATCGGKGKVRKRKKINVKVPAGI 221

Query: 305 DSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKV 364
           D G  +RV   G AG  G   G+L++   V     F RDG D+Y +  ++F Q  LG ++
Sbjct: 222 DHGQQLRVSGQGEAGVNGGPPGDLYVVFNVKPHEFFERDGDDIYCEMPLTFPQVALGDEI 281

Query: 365 DVPTLSGKVQVKIPKGVQPGQLLVLRGKGLAKNGLFLDHGDQYVRFRVNFP 415
           +VPTL+GKV++KIP G Q G    LRGKG+  N      GDQ+V+ RV  P
Sbjct: 282 EVPTLNGKVKLKIPAGTQTGTSFRLRGKGVP-NVHGRGQGDQHVQVRVVTP 331

Length = 371

>gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional

 Score =  211 bits (538), Expect = 2e-64
 Identities = 121/327 (37%), Positives = 174/327 (53%), Gaps = 24/327 (7%)

Query: 82  RDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKR 141
           +D Y++LGV + ASQ ++KKA+  LAKQYHPD   +   A++KF+EI  AY+ L+D +KR
Sbjct: 3   QDYYQILGVSKTASQADLKKAYLKLAKQYHPD-TTDAKDAEKKFKEINAAYDVLKDEQKR 61

Query: 142 AQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIF-----ED 196
           A YDR      +N++   G        G+  GF        +D F   FS+         
Sbjct: 62  AAYDRFGHDAFQNQQSRGG-------GGNHGGF----HPDINDIFGDFFSDFMGGSRRSR 110

Query: 197 ETSHFA--PDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRG 254
            TS      D++  L ++  EA  G  K++SF + V CD+CHG G         C  C G
Sbjct: 111 PTSSKVRGSDLKYNLTINLEEAFHGIEKNISFSSEVKCDTCHGSGSEKGETVTTCDACSG 170

Query: 255 IG--RVTIPPFT--STCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDTI 310
           +G  R+    FT    C  C+G G+IIK+ C  C G G     + + V IPAGV++G  I
Sbjct: 171 VGATRMQQGFFTIEQACHKCQGNGQIIKNPCKKCHGMGRYHKQRNLSVNIPAGVENGTRI 230

Query: 311 RVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLS 370
           R    G AG RG   G+L++ + +    I+  DGA+++    ISF  A LGG+++VP + 
Sbjct: 231 RHTGEGEAGIRGGNSGDLYVDIAIKPHDIYKVDGANLHCKLPISFVNAALGGEIEVPVIE 290

Query: 371 -GKVQVKIPKGVQPGQLLVLRGKGLAK 396
            GKV + IP G Q G  L LR KG++K
Sbjct: 291 GGKVNLTIPAGTQNGDQLRLRSKGMSK 317

Length = 372

>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional

 Score =  211 bits (539), Expect = 3e-64
 Identities = 123/350 (35%), Positives = 175/350 (50%), Gaps = 17/350 (4%)

Query: 83  DPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRA 142
           D Y +LGV + AS +EIKKA+  LA +YHPD N  +  A+++F+E+ +AYE L D++KR 
Sbjct: 2   DYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRE 61

Query: 143 QYDRRRSRGSENEKYSAGDA------EGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIF-- 194
            YDR    G        G A      +  R    A G  +     F +       E F  
Sbjct: 62  SYDRYGKDGPFAGAGGFGGAGMGNMEDALRTFMGAFGGEFGGGGSFFEGLFGGLGEAFGM 121

Query: 195 --EDETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTC 252
                 +      +V + LSF EAAKG  K +    +  CD+C G G  +    K+C  C
Sbjct: 122 RGGPAGARQGASKKVHITLSFEEAAKGVEKELLVSGYKSCDACSGSGANSSQGIKVCDRC 181

Query: 253 RGIGRVT----IPPFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGD 308
           +G G+V          STC  C G GR+I D C  C+G G +   + V V IPAGVDSG 
Sbjct: 182 KGSGQVVQSRGFFSMASTCPECGGEGRVITDPCSVCRGQGRIKDKRSVHVHIPAGVDSGM 241

Query: 309 TIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPT 368
            +++   G+AG  G   G+L++ + V   P+F R G D+ ++  I F  A LG K ++PT
Sbjct: 242 RLKMEGYGDAGQNGAPAGDLYVFIDVEPHPVFERRGDDLILELPIGFVDAALGMKKEIPT 301

Query: 369 L--SGKVQVKIPKGVQPGQLLVLRGKGLAKNGLFLDHGDQYVRFRVNFPT 416
           L   G  ++ IP+G+Q G +L +RG+G   N      GD  VR  V  P 
Sbjct: 302 LLKEGTCRLTIPEGIQSGTILKVRGQGFP-NVHGKGRGDLLVRISVETPQ 350

Length = 391

>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional

 Score =  207 bits (528), Expect = 6e-63
 Identities = 115/355 (32%), Positives = 175/355 (49%), Gaps = 35/355 (9%)

Query: 80  SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSE 139
           S+R  Y++LGV ++A+ +EIK A+  LA +YHPD NK N  ++ KF+E  +AYE LRD +
Sbjct: 2   SERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPK 61

Query: 140 KRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSD---SFHKIFSEIFED 196
           KR  YD+    G                   A GF     T FSD    F  IF + F  
Sbjct: 62  KRQAYDQFGKAG---------------VNAGAGGFGQGAYTDFSDIFGDFGDIFGDFFGG 106

Query: 197 ETS-----------HFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAK 245
                             D++  L +S  +AA G    +       C  C+G G    + 
Sbjct: 107 GRGGGSGGGRRSGPQRGSDLRYNLEVSLEDAALGREYKIEIPRLESCVDCNGSGASKGSS 166

Query: 246 TKICSTCRGIGRVT----IPPFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIP 301
              C  C G G++          +TC TC+G G +I + C TC G G+ +  + + + IP
Sbjct: 167 PTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVISNPCKTCGGQGLQEKRRTINIKIP 226

Query: 302 AGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILG 361
            GV++G  ++V   G AG  G  HG+L++   +    +F R G D+ +   IS  QAILG
Sbjct: 227 PGVETGSRLKVSGEGEAGPNGGPHGDLYVVTHIKKHELFERQGNDLILVRKISLAQAILG 286

Query: 362 GKVDVPTLSGK-VQVKIPKGVQPGQLLVLRGKGLAKNGLFLDHGDQYVRFRVNFP 415
            +++VPT+ GK  ++KIP+G + GQ+  L+G G+   G +   GDQ+V  ++  P
Sbjct: 287 AEIEVPTIDGKKAKMKIPEGTESGQVFRLKGHGMPYLGAY-GKGDQHVIVKIEIP 340

Length = 372

>gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional

 Score =  207 bits (527), Expect = 1e-62
 Identities = 112/351 (31%), Positives = 178/351 (50%), Gaps = 21/351 (5%)

Query: 80  SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSE 139
            K+D YE+LGV + AS+ EI++A+  LAKQYHPD NK+ P A  K  EI +A + L D +
Sbjct: 2   KKKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKS-PDAHDKMVEINEAADVLLDKD 60

Query: 140 KRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFEDETS 199
           KR QYD+    G      S+G +  F   GD E       +    SF  IFS+ F    S
Sbjct: 61  KRKQYDQF---GHAAFDGSSGFSSNF---GDFEDLFSNMGSSGFSSFTNIFSDFFGSNKS 114

Query: 200 HF-----APDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRG 254
            +        + +++ L+F E   G  K +  D    C  C G G  +++   IC+ C G
Sbjct: 115 DYQRSTKGQSVSLDIYLTFKELLFGVDKIIELDLLTNCSKCFGSGAESNSDIHICNNCHG 174

Query: 255 IGRVTIP----PF----TSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDS 306
            G V +      F    ++ C+ C G G+IIK+ C  CKG G     K+++V IP G+  
Sbjct: 175 TGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIKNKCKNCKGKGKYLERKKIEVNIPKGIRP 234

Query: 307 GDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSR-DGADVYVDSNISFTQAILGGKVD 365
              I++ + G+A      +G+L I + + +  +F   +  D+ +  NIS+  AILG ++ 
Sbjct: 235 NQQIKLSQKGHASLNNGVNGDLIIDIYLKESKVFEIINNNDILMTYNISYLDAILGNEII 294

Query: 366 VPTLSGKVQVKIPKGVQPGQLLVLRGKGLAKNGLFLDHGDQYVRFRVNFPT 416
           + TL G ++ K+PK +   +L+++  KGL K+      GD  ++  +  P 
Sbjct: 295 IKTLDGDIKYKLPKSINSNELIIINNKGLYKSINKDKRGDLIIKVNIVVPK 345

Length = 372

>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional

 Score =  202 bits (516), Expect = 4e-61
 Identities = 126/373 (33%), Positives = 188/373 (50%), Gaps = 57/373 (15%)

Query: 82  RDPYELLGVPENASQDEIKKAFHMLAKQYHPDAN-KNNPSAKRKFQEIRDAYETLRDSEK 140
           +D Y++LGV  NASQ++IKKAF  LAK++HPD +  N   A+ KF+EI +AYE L D +K
Sbjct: 3   KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQK 62

Query: 141 RAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIF------ 194
           R QYD+    G+ +            +      F +   THFSD  + IF++IF      
Sbjct: 63  RRQYDQT---GTVD------------FGAGGSNFNWDNFTHFSD-INDIFNQIFGGNFGS 106

Query: 195 --------EDETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKT 246
                   +  T +   DI   L +S  +A  G  K + +     C  C G G   + K 
Sbjct: 107 DFFSGFGNQQSTRNIDLDIYTNLDISLEDAYYGTEKRIKYRRNAMCPDCSGTG-AKNGKL 165

Query: 247 KICSTCRGIGR------------VTIPPFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVK 294
             C TC G G+            VT+    +TC TC G GRI ++ C  C G+G V   +
Sbjct: 166 ITCPTCHGTGQQRIVRGQGFFRMVTV----TTCRTCGGRGRIPEEKCPRCNGTGTVVVNE 221

Query: 295 EVKVTIPAGVDSGDTIRVPEAGNA-GGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNI 353
           ++ V IP G      +RV   G + GGR    G+L++ L+V +DP   R   D+YVD  I
Sbjct: 222 DISVKIPKGATDNLRLRVKGKGQSYGGRT---GDLYVVLRVNNDPNIQRINDDLYVDQKI 278

Query: 354 SFTQAILGGKVDVPTLSGKVQVKIPKGVQPGQLLVLRGKGLAK-NGLFLDHGDQYVRFRV 412
           +F QA LGG++++     K  +KIP+G QPG++L ++G G+   NG    HG   +  R+
Sbjct: 279 NFPQAALGGEIEIKLFREKYNLKIPEGTQPGEVLKIKGAGMPHLNG----HGSGDLLVRI 334

Query: 413 NFPTWQRIVERVR 425
           N    +R+  + +
Sbjct: 335 NVEVPKRLTSKQK 347

Length = 365

>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional

 Score =  202 bits (516), Expect = 5e-61
 Identities = 122/355 (34%), Positives = 160/355 (45%), Gaps = 43/355 (12%)

Query: 82  RDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKR 141
           RD Y LLGV  NAS  EIK+A+  LA++ HPD N +   A+ KF+EI  AYE L D EKR
Sbjct: 3   RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPD-EEAQEKFKEISVAYEVLSDPEKR 61

Query: 142 AQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFEDETSHF 201
              D              G   GF   GD                  +F   F    +  
Sbjct: 62  RIVDLGGDPLESAGGGGGGFGGGFGGLGD------------------VFEAFFGGGAASR 103

Query: 202 AP--------DIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCR 253
            P        D  + + L   E A G TK V+ D  V CD CHG+G   D+K   C TC 
Sbjct: 104 GPRGRVRPGSDSLLRMRLDLEECATGVTKQVTVDTAVLCDRCHGKGTAGDSKPVTCDTCG 163

Query: 254 GIGRVTIPP-------FTST-CSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVD 305
           G G V            TS  C TC+G+G +I D C  C G G V   +E+ V IPAGV 
Sbjct: 164 GRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIPDPCHECAGDGRVRARREITVKIPAGVG 223

Query: 306 SGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVD 365
            G  IR+   G  G  G   G+L++++      +F RDG D++   ++    A LG  V 
Sbjct: 224 DGMRIRLAAQGEVGPGGGPAGDLYVEVHEQPHDVFVRDGDDLHCTVSVPMVDAALGTTVT 283

Query: 366 VPTLS-GKVQVKIPKGVQPGQLLVLRGKGLAK---NGLFLDHGDQYVRFRVNFPT 416
           V  +  G  ++ IP G QPG ++ LRG+G+      G     GD +    V  PT
Sbjct: 284 VEAILDGPSEITIPPGTQPGSVITLRGRGMPHLRSGG----RGDLHAHVEVVVPT 334

Length = 378

>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional

 Score =  200 bits (511), Expect = 3e-60
 Identities = 122/350 (34%), Positives = 165/350 (47%), Gaps = 38/350 (10%)

Query: 83  DPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRA 142
           D YELLGV   AS DEIK A+  LA +YHPD NK    A  KF +I +AY  L D+EKRA
Sbjct: 3   DYYELLGVSRTASADEIKSAYRKLALKYHPDRNKE-KGAAEKFAQINEAYAVLSDAEKRA 61

Query: 143 QYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEI-----FEDE 197
            YDR  +  +       GD  G        GF         D F ++F            
Sbjct: 62  HYDRFGT--APGAGMPGGDPFG------GMGFDPM------DIFEQLFGGAGFGGGRGRR 107

Query: 198 TSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHG-RGFPADAKTKICSTCRGIG 256
                 D++ E  ++  +A  G    V  D    C+ CHG R  P     K C TCRG G
Sbjct: 108 GPARGDDLETEARITLEQARAGEEVEVEVDRLTECEHCHGSRTEPGGKPPKTCPTCRGAG 167

Query: 257 RV-----TIPPFTST---CSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGD 308
            V     TI     T   C TC+G G+II D C  C+G G     + VKV +P G+D G 
Sbjct: 168 AVRAQARTIFGVVETQQPCPTCRGEGQIITDPCTVCRGRGRTLKAETVKVKLPRGIDEGY 227

Query: 309 TIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPT 368
            IRV   GN G  G  +G+L++ +++   P   R+   +  ++ I F +A LGG++ VPT
Sbjct: 228 RIRVAGMGNEGPGG--NGDLYVHIEMEPHPELRREQEHLIYEARIGFAKAALGGQITVPT 285

Query: 369 LSGKVQVKIPKGVQPGQLLVLRGKGLAK---NGLFLDHGDQYVRFRVNFP 415
           L G   +++  G Q G L  LRG+G+ +    G     GD  V + +  P
Sbjct: 286 LDGPQVIEVKPGTQHGDLHRLRGQGMPRLQGAGT----GDLIVEYEIAVP 331

Length = 371

>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional

 Score =  198 bits (504), Expect = 2e-59
 Identities = 112/322 (34%), Positives = 177/322 (54%), Gaps = 15/322 (4%)

Query: 81  KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEK 140
           KRD YE+LG+ + AS+DEIKKA+  +A +YHPD NK N  A+  F+E  +AYE L D  K
Sbjct: 2   KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNK 61

Query: 141 RAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFEDETSH 200
           RAQYDR      E      G  EGF  +G   GF   ++  F D F   F+     + + 
Sbjct: 62  RAQYDRFGHTAFE----GGGGFEGF--SGGFSGFSDIFED-FGDIFDSFFTGNRGQDKNR 114

Query: 201 F---APDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGIGR 257
                 D+  ++ +S  +A  G   +++    + C+SC G+         IC+ C G GR
Sbjct: 115 KHEKGQDLTYQIEISLEDAYLGYKNNINITRNMLCESCLGKKSEKGTSPSICNMCNGSGR 174

Query: 258 VT----IPPFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDTIRVP 313
           V         T+TC  C G G+II + C +CKG G +   + +++ IPAG+D    I++ 
Sbjct: 175 VMQGGGFFRVTTTCPKCYGNGKIISNPCKSCKGKGSLKKKETIELKIPAGIDDNQQIKMR 234

Query: 314 EAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGK- 372
             G+     +Q+G+L+IK+ +    IF R+G D+Y    ISFTQA LG ++ + T++ K 
Sbjct: 235 GKGSVNPDNQQYGDLYIKILIKPHKIFKRNGKDLYATLPISFTQAALGKEIKIQTIASKK 294

Query: 373 VQVKIPKGVQPGQLLVLRGKGL 394
           +++KIPKG +  + ++++ +G+
Sbjct: 295 IKIKIPKGTENDEQIIIKNEGM 316

Length = 365

>gnl|CDD|199909 cd10747, DnaJ_C, C-terminal substrate binding domain of DnaJ and HSP40

 Score =  167 bits (426), Expect = 3e-50
 Identities = 58/128 (45%), Positives = 82/128 (64%), Gaps = 1/128 (0%)

Query: 289 VVDGVKEVKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVY 348
            V   K + V IPAGVD G  +R+   G+AG  G   G+L++ ++V   P+F RDG D+Y
Sbjct: 30  RVREKKTLTVKIPAGVDDGQRLRLRGEGDAGPNGGPPGDLYVVIRVKPHPVFRRDGNDLY 89

Query: 349 VDSNISFTQAILGGKVDVPTLSGKVQVKIPKGVQPGQLLVLRGKGLAKNGLFLDHGDQYV 408
            +  IS T+A+LGG+++VPTL GKV++KIP G QPG +L L+GKG+ +       GD YV
Sbjct: 90  CEVPISLTEALLGGEIEVPTLGGKVKLKIPPGTQPGTVLRLKGKGMPRLRGG-GRGDLYV 148

Query: 409 RFRVNFPT 416
             +V FP 
Sbjct: 149 EVKVEFPK 156

The C-terminal region of the DnaJ/Hsp40 protein mediates oligomerization and binding to denatured polypeptide substrate. DnaJ/Hsp40 is a widely conserved heat-shock protein. It prevents the aggregation of unfolded substrate and forms a ternary complex with both substrate and DnaK/Hsp70; the N-terminal J-domain of DnaJ/Hsp40 stimulates the ATPase activity of DnaK/Hsp70. Length = 158

>gnl|CDD|172776 PRK14288, PRK14288, chaperone protein DnaJ; Provisional

 Score =  172 bits (438), Expect = 1e-49
 Identities = 108/326 (33%), Positives = 167/326 (51%), Gaps = 39/326 (11%)

Query: 85  YELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQY 144
           YE+L V ++++Q+ IKK++  LA +YHPD N  +  A+ KF+ I +AY  L D +KRA Y
Sbjct: 6   YEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALY 65

Query: 145 DRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFED-------- 196
           DR                +G   AG       A Q+ FSD F  + S  FED        
Sbjct: 66  DRY-------------GKKGLNQAG-------ASQSDFSDFFEDLGS-FFEDAFGFGARG 104

Query: 197 ---ETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCR 253
              + S  APD    + LSF EA  GC K +       C+SC G G   D   + C  C 
Sbjct: 105 SKRQKSSIAPDYLQTIELSFKEAVFGCKKTIKVQYQSVCESCDGTG-AKDKALETCKQCN 163

Query: 254 GIGRVTIP----PFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDT 309
           G G+V +      F  TC  C+G G+IIK  C  CKG   +   +E+   IP G+D  + 
Sbjct: 164 GQGQVFMRQGFMSFAQTCGACQGKGKIIKTPCQACKGKTYILKDEEIDAIIPEGIDDQNR 223

Query: 310 IRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTL 369
           + +   GN   +G++ G+L+++ +V +D  F R+G D+++++ + FT   LG  + VP+L
Sbjct: 224 MVLKNKGNEYEKGKR-GDLYLEARVKEDEHFKREGCDLFIEAPVFFTTIALGHTIKVPSL 282

Query: 370 SG-KVQVKIPKGVQPGQLLVLRGKGL 394
            G ++++KIP+  +  Q    R +G+
Sbjct: 283 KGDELELKIPRNARDRQTFAFRNEGV 308

Length = 369

>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional

 Score =  146 bits (369), Expect = 2e-39
 Identities = 104/345 (30%), Positives = 147/345 (42%), Gaps = 42/345 (12%)

Query: 85  YELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQY 144
           YE+L + ++ +  EIKKA+  LA ++HPD   +      KF+EI  AYE L D EKR  Y
Sbjct: 31  YEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD----PEKFKEISRAYEVLSDPEKRKIY 86

Query: 145 DRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFEDETSHFAPD 204
           D     G E       DA                    SD F  IF    +        D
Sbjct: 87  DEYGEEGLEG-GEQPADA--------------------SDLFDLIFGGGRKPGGKKRGED 125

Query: 205 IQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGIG-RVTIPPF 263
           I   L ++  +   G  + ++ +  V C +C G G P DA    C  C G G RV I   
Sbjct: 126 IVSHLKVTLEQIYNGAMRKLAINKDVICANCEGHGGPKDAFVD-CKLCNGQGIRVQIRQM 184

Query: 264 TS-------TCSTCKGLGRII--KDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDTIRVPE 314
            S       TC++C G G+II     C  C G GV    K ++V I  GV   +  ++  
Sbjct: 185 GSMIHQTQSTCNSCNGQGKIIPESKKCKNCSGKGVKKTRKILEVNIDKGVP--NQHKITF 242

Query: 315 AGNAGGR-GRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSG-K 372
            G A  +     GN+   L       F R+G D+++   IS  +A+ G    +  L G K
Sbjct: 243 HGEADEKPNEIPGNVVFILNEKPHDTFKREGGDLFITKKISLYEALTGFVFYITHLDGRK 302

Query: 373 VQVKIPKG--VQPGQLLVLRGKGLAKNGLFLDHGDQYVRFRVNFP 415
           + V  P G  V+PG + V+  +G+         G+ YV F V FP
Sbjct: 303 LLVNTPPGEVVKPGDIKVINNEGMPTYKSPFKKGNLYVTFEVIFP 347

Length = 421

>gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional

 Score =  131 bits (331), Expect = 6e-35
 Identities = 92/369 (24%), Positives = 150/369 (40%), Gaps = 108/369 (29%)

Query: 82  RDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKR 141
           +D Y ++GV        IK A+  LA++YHPD +K  P A+ +F+E+ +A+E L D ++R
Sbjct: 4   KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKE-PDAEARFKEVAEAWEVLSDEQRR 62

Query: 142 AQYDR-----------RRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIF 190
           A+YD+           R+ +  + + ++A D                    F D    IF
Sbjct: 63  AEYDQLWQHRNDPQFNRQFQHGDGQSFNAED--------------------FDD----IF 98

Query: 191 SEIFEDETSHF-------APDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPAD 243
           S IF                DI++E+ +   E      + +S+                 
Sbjct: 99  SSIFGQHARQSRQRPAARGHDIEIEVAVFLEETLTEHKRTISY----------------- 141

Query: 244 AKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAG 303
                           +P + +        G I ++   T         VK     IPAG
Sbjct: 142 ---------------NLPVYNA-------FGMIEQEIPKTLN-------VK-----IPAG 167

Query: 304 VDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGK 363
           V +G  IR+   G  G  G  +G+L++ + +A  P+F   G D+ +   ++  +A LG K
Sbjct: 168 VGNGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGQDLEIVVPLAPWEAALGAK 227

Query: 364 VDVPTLSGKVQVKIPKGVQPGQLLVLRGKGLA-KNGLFLDHGDQYVRFRVNFPT------ 416
           V VPTL   + + IP G Q GQ L ++GKGL  K       GD Y   ++  P       
Sbjct: 228 VTVPTLKESILLTIPPGSQAGQRLRVKGKGLVSKKQ----TGDLYAVLKIVMPPKPDEKT 283

Query: 417 ---WQRIVE 422
              WQ++ +
Sbjct: 284 AALWQQLAD 292

Length = 306

>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain

 Score =  109 bits (276), Expect = 9e-30
 Identities = 38/63 (60%), Positives = 48/63 (76%)

Query: 83  DPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRA 142
           D YE+LGVP +AS +EIKKA+  LA +YHPD N  +P+A+ KF+EI +AYE L D EKRA
Sbjct: 1   DYYEILGVPRDASDEEIKKAYRKLALKYHPDKNPGDPAAEEKFKEINEAYEVLSDPEKRA 60

Query: 143 QYD 145
            YD
Sbjct: 61  IYD 63

DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature. Length = 63

>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain

 Score = 92.6 bits (231), Expect = 1e-23
 Identities = 31/55 (56%), Positives = 42/55 (76%)

Query: 83  DPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRD 137
           D Y++LGVP +AS +EIKKA+  LA +YHPD N ++P A+ KF+EI +AYE L D
Sbjct: 1   DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification. Length = 55

>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional

 Score = 99.6 bits (248), Expect = 1e-23
 Identities = 61/160 (38%), Positives = 82/160 (51%), Gaps = 17/160 (10%)

Query: 80  SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSE 139
           + +D Y +LGVP+NASQDEIKKAF  LA++YHPD NK +P A+ KF+EI +AY  L D E
Sbjct: 2   AYKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNK-SPGAEEKFKEINEAYTVLSDPE 60

Query: 140 KRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIF--------- 190
           KR  YD   +  +       G   G    GD  GF       FSD F ++F         
Sbjct: 61  KRRIYDTYGT--TAASAGWQGPPPGPPGGGDFSGFNVG---DFSDFFQQLFGGRGGFGGF 115

Query: 191 SEIFED--ETSHFAPDIQVELVLSFAEAAKGCTKHVSFDA 228
            ++F      +    D++ EL L+  EA +G  K V    
Sbjct: 116 GDLFGSVGRRARKGRDLEAELPLTLEEAYRGGEKVVEVAG 155

Length = 291

>gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain

 Score = 91.9 bits (229), Expect = 3e-23
 Identities = 34/60 (56%), Positives = 42/60 (70%), Gaps = 1/60 (1%)

Query: 82  RDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPS-AKRKFQEIRDAYETLRDSEK 140
            D YE+LGVP +AS DEIKKA+  LA +YHPD N  +   A+ KF+EI +AYE L D EK
Sbjct: 1   TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK 60

Length = 60

>gnl|CDD|216569 pfam01556, DnaJ_C, DnaJ C terminal domain

 Score = 91.1 bits (227), Expect = 1e-22
 Identities = 33/72 (45%), Positives = 43/72 (59%), Gaps = 1/72 (1%)

Query: 346 DVYVDSNISFTQAILGGKVDVPTLSGK-VQVKIPKGVQPGQLLVLRGKGLAKNGLFLDHG 404
           D+YV   IS  +A+LGG V+VPTL G+ V++KIP G QPG  L ++GKG+  N      G
Sbjct: 1   DLYVTLPISLKEALLGGTVEVPTLDGRKVKIKIPAGTQPGDKLRIKGKGMPINKGGNGRG 60

Query: 405 DQYVRFRVNFPT 416
           D  V   V  P 
Sbjct: 61  DLIVTLNVKIPK 72

This family consists of the C terminal region form the DnaJ protein. Although the function of this region is unknown, it is always found associated with pfam00226 and pfam00684. DnaJ is a chaperone associated with the Hsp70 heat-shock system involved in protein folding and renaturation after stress. Length = 81

>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional

 Score = 92.3 bits (229), Expect = 6e-21
 Identities = 46/125 (36%), Positives = 68/125 (54%), Gaps = 8/125 (6%)

Query: 292 GVKEVKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDS 351
             + + V IP GV  G  IR+       G+GRQ G+L++ +++   P+F  +G D+Y   
Sbjct: 154 AGERLSVRIPPGVREGQVIRLA------GKGRQGGDLYLVVRLLPHPVFRLEGDDLYATV 207

Query: 352 NISFTQAILGGKVDVPTLSGKVQVKIPKGVQPGQLLVLRGKGLAKNGLFLDHGDQYVRFR 411
           ++    A++GGKV V TL G V+V IP   Q G+ L L+GKG  +       GDQY   R
Sbjct: 208 DVPAPIAVVGGKVRVMTLDGPVEVTIPPRTQAGRKLRLKGKGWPRGP--AGRGDQYAEVR 265

Query: 412 VNFPT 416
           +  PT
Sbjct: 266 ITIPT 270

Length = 291

>gnl|CDD|225124 COG2214, CbpA, DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

 Score = 84.9 bits (209), Expect = 9e-19
 Identities = 44/128 (34%), Positives = 63/128 (49%), Gaps = 5/128 (3%)

Query: 81  KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPS-AKRKFQEIRDAYETLRDSE 139
             D YE+LGVP NAS +EIKKA+  LA +YHPD N  +P  A+ KF+EI +AYE L D E
Sbjct: 5   LLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPE 64

Query: 140 KRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQT---HFSDSFHKIFSEIFED 196
           +RA+YD+  +      K S  ++  F   G  +      +              +++   
Sbjct: 65  RRAEYDKIGADNYFPGK-SYRESAAFPIEGSLQLTGLYEEWRGKRNKTERKASLADLLSR 123

Query: 197 ETSHFAPD 204
             S  A  
Sbjct: 124 GLSGLAAA 131

Length = 237

>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein TopJ

 Score = 87.2 bits (215), Expect = 3e-18
 Identities = 39/85 (45%), Positives = 51/85 (60%), Gaps = 1/85 (1%)

Query: 81  KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEK 140
           KRD YE+LG+  +A + EIKKAF  LAK+YHPD NK  P A   F EI +A + L + +K
Sbjct: 1   KRDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNK-APDAASIFAEINEANDVLSNPKK 59

Query: 141 RAQYDRRRSRGSENEKYSAGDAEGF 165
           RA YD+    G + E      A+ F
Sbjct: 60  RANYDKYGHDGVDREDDFDFQADVF 84

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility [Cellular processes, Chemotaxis and motility]. Length = 871

>gnl|CDD|199908 cd10719, DnaJ_zf, Zinc finger domain of DnaJ and HSP40

 Score = 76.9 bits (190), Expect = 9e-18
 Identities = 27/65 (41%), Positives = 32/65 (49%), Gaps = 8/65 (12%)

Query: 232 CDSCHGRGFPADAKTKICSTCRGIGRVTIP--------PFTSTCSTCKGLGRIIKDHCMT 283
           C +C+G G     K K C TC G G+V              +TC TC G G+IIKD C  
Sbjct: 1   CPTCNGSGAKPGTKPKTCPTCGGSGQVRQVQGTGFGFFQTQTTCPTCGGTGKIIKDPCPK 60

Query: 284 CKGSG 288
           CKG G
Sbjct: 61  CKGKG 65

Central/middle or CxxCxGxG-motif containing domain of DnaJ/Hsp40 (heat shock protein 40). DnaJ proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonin family. Hsp40 proteins are characterized by the presence of an N-terminal J domain, which mediates the interaction with Hsp70. This central domain contains four repeats of a CxxCxGxG motif and binds to two Zinc ions. It has been implicated in substrate binding. Length = 65

>gnl|CDD|216058 pfam00684, DnaJ_CXXCXGXG, DnaJ central domain

 Score = 65.5 bits (160), Expect = 1e-13
 Identities = 27/65 (41%), Positives = 29/65 (44%), Gaps = 8/65 (12%)

Query: 232 CDSCHGRGFPADAKTKICSTCRGIGRVTI----PPFT----STCSTCKGLGRIIKDHCMT 283
           C  CHG G     K K C  C G G+V      P        TC  C G G+IIKD C  
Sbjct: 1   CPHCHGTGAKPGKKPKTCPQCNGSGQVVKRQRTPGGVFQMQQTCPKCGGTGKIIKDPCKV 60

Query: 284 CKGSG 288
           CKG G
Sbjct: 61  CKGKG 65

The central cysteine-rich (CR) domain of DnaJ proteins contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DNAJ cysteine rich domain and various hydrophobic peptides has been found. Length = 65

>gnl|CDD|236512 PRK09430, djlA, Dna-J like membrane chaperone protein; Provisional

 Score = 55.6 bits (135), Expect = 1e-08
 Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 7/61 (11%)

Query: 83  DPYELLGVPENASQDEIKKAFHMLAKQYHPD--ANKNNPS-----AKRKFQEIRDAYETL 135
           D Y++LGV E+    EIK+A+  L  ++HPD    K  P      AK K QEI+ AYE +
Sbjct: 201 DAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELI 260

Query: 136 R 136
           +
Sbjct: 261 K 261

Length = 267

>gnl|CDD|227694 COG5407, SEC63, Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

 Score = 56.1 bits (135), Expect = 2e-08
 Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 5/67 (7%)

Query: 83  DPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKR-----KFQEIRDAYETLRD 137
           DPYE+LG+ ++ S+ +IKK + ML+ ++HPD      +  R     K++ I  AY  L D
Sbjct: 99  DPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTD 158

Query: 138 SEKRAQY 144
            ++R  Y
Sbjct: 159 KKRRENY 165

Length = 610

>gnl|CDD|224002 COG1076, DjlA, DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 7/63 (11%)

Query: 81  KRDPYELLGVPENASQDEIKKAFHMLAKQYHPD--ANKNNP-----SAKRKFQEIRDAYE 133
           + D  ++LGV   A QD IKKA+  L  + HPD  A K          K K QEI++AYE
Sbjct: 112 REDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYE 171

Query: 134 TLR 136
            ++
Sbjct: 172 DIK 174

Length = 174

>gnl|CDD|199909 cd10747, DnaJ_C, C-terminal substrate binding domain of DnaJ and HSP40

 Score = 47.4 bits (114), Expect = 2e-06
 Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 13/78 (16%)

Query: 345 ADVYVDSNISFTQAILGGKVDVPTLSG---------KVQVKIPKGVQPGQLLVLRGKGLA 395
           AD+  D  ++  +A  G + ++  +            + VKIP GV  GQ L LRG+G A
Sbjct: 1   ADLRYDLELTLEEAYFGKEKEI-KIPRKVTRVREKKTLTVKIPAGVDDGQRLRLRGEGDA 59

Query: 396 -KNGLFLDHGDQYVRFRV 412
             NG     GD YV  RV
Sbjct: 60  GPNG--GPPGDLYVVIRV 75

The C-terminal region of the DnaJ/Hsp40 protein mediates oligomerization and binding to denatured polypeptide substrate. DnaJ/Hsp40 is a widely conserved heat-shock protein. It prevents the aggregation of unfolded substrate and forms a ternary complex with both substrate and DnaK/Hsp70; the N-terminal J-domain of DnaJ/Hsp40 stimulates the ATPase activity of DnaK/Hsp70. Length = 158

>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen; Provisional

 Score = 49.8 bits (118), Expect = 2e-06
 Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 1/62 (1%)

Query: 85  YELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQY 144
           Y++LGV  NA   EI + +  LA+ Y+P     N     KF++I +AY+ L D +K+  Y
Sbjct: 576 YDILGVGVNADMKEISERYFKLAENYYPPKRSGN-EGFHKFKKINEAYQILGDIDKKKMY 634

Query: 145 DR 146
           ++
Sbjct: 635 NK 636

Length = 1136

>gnl|CDD|211601 TIGR00714, hscB, Fe-S protein assembly co-chaperone HscB

 Score = 45.3 bits (107), Expect = 9e-06
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 3/52 (5%)

Query: 96  QDEIKKAFHMLAKQYHPDANKN---NPSAKRKFQEIRDAYETLRDSEKRAQY 144
           Q  ++K +  L  QYHPDA+       +A ++   +  AY TL+D  +RA+Y
Sbjct: 5   QSRLRKRYRQLQAQYHPDASGMAQEQLAASQQSTTLNQAYHTLKDPLRRAEY 56

This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock [Protein fate, Protein folding and stabilization]. Length = 155

>gnl|CDD|167217 PRK01356, hscB, co-chaperone HscB; Provisional

 Score = 44.9 bits (106), Expect = 1e-05
 Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 5/65 (7%)

Query: 85  YELLGVPENASQD--EIKKAFHMLAKQYHPDANKNNPSAKRKFQ---EIRDAYETLRDSE 139
           ++LLG+P+  + D   ++K +  +  +YHPD  K     ++      E+ +AY TL+D+ 
Sbjct: 5   FQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDAL 64

Query: 140 KRAQY 144
           KRA+Y
Sbjct: 65  KRAEY 69

Length = 166

>gnl|CDD|216569 pfam01556, DnaJ_C, DnaJ C terminal domain

 Score = 42.5 bits (101), Expect = 2e-05
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)

Query: 291 DGVKEVKVTIPAGVDSGDTIRVPEAG-NAGGRGRQHGNLFIKLKV 334
           DG ++VK+ IPAG   GD +R+   G      G   G+L + L V
Sbjct: 25  DG-RKVKIKIPAGTQPGDKLRIKGKGMPINKGGNGRGDLIVTLNV 68

This family consists of the C terminal region form the DnaJ protein. Although the function of this region is unknown, it is always found associated with pfam00226 and pfam00684. DnaJ is a chaperone associated with the Hsp70 heat-shock system involved in protein folding and renaturation after stress. Length = 81

>gnl|CDD|235133 PRK03578, hscB, co-chaperone HscB; Provisional

 Score = 42.7 bits (101), Expect = 8e-05
 Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 7/73 (9%)

Query: 79  SSKRDPYELLGVPENASQDE--IKKAFHMLAKQYHPDANKNNPSAKRKFQ-----EIRDA 131
           S K D + L G+P   + DE  +  A+  +  Q HPD       A+++          +A
Sbjct: 3   SLKDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEA 62

Query: 132 YETLRDSEKRAQY 144
           Y+TLRD  KRA+Y
Sbjct: 63  YQTLRDPLKRARY 75

Length = 176

>gnl|CDD|227594 COG5269, ZUO1, Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

 Score = 41.6 bits (97), Expect = 6e-04
 Identities = 26/70 (37%), Positives = 33/70 (47%), Gaps = 5/70 (7%)

Query: 81  KRDPYELLGVPE---NASQDEIKKAFHMLAKQYHPD--ANKNNPSAKRKFQEIRDAYETL 135
           K D Y LLG+ +    A   +I KA      +YHPD  A   N      F+ I+ A E L
Sbjct: 42  KVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVL 101

Query: 136 RDSEKRAQYD 145
            D + R QYD
Sbjct: 102 GDRKLRLQYD 111

Length = 379

>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein TopJ

 Score = 41.3 bits (96), Expect = 0.001
 Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 2/87 (2%)

Query: 322 GRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGKVQVKIPKGV 381
           G   G+L +  KV     F      ++V + +    A  GG +DV   +    V+IP G+
Sbjct: 723 GNGCGDLKVVFKVIPSNFFQIKNDGLHVAALVDPLVAYNGGIIDVFGPNKLFNVRIPGGI 782

Query: 382 QPGQLLVLRGKGLAKNGLFLDHGDQYV 408
           +    ++ +  GL K     D G   V
Sbjct: 783 KVNDQVIFKDLGLTKT--KYDKGSLIV 807

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility [Cellular processes, Chemotaxis and motility]. Length = 871

>gnl|CDD|179914 PRK05014, hscB, co-chaperone HscB; Provisional

 Score = 39.1 bits (92), Expect = 0.001
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 13/72 (18%)

Query: 83  DPYELLGVPENASQDEIKKA-----FHMLAKQYHPDANKNNPSAKR-----KFQEIRDAY 132
           D + L G+P   ++ +I        +  L +Q+HPD   N    +R     +   I DAY
Sbjct: 2   DYFTLFGLP---ARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAY 58

Query: 133 ETLRDSEKRAQY 144
           +TL+   KRA+Y
Sbjct: 59  QTLKHPLKRAEY 70

Length = 171

>gnl|CDD|178709 PLN03165, PLN03165, chaperone protein dnaJ-related; Provisional

 Score = 37.9 bits (88), Expect = 0.002
 Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 14/64 (21%)

Query: 231 PCDSCHGRGFPADAKTKICSTCRGIGRVTI-----PPFTSTCSTCKGLGRIIKDHCMTCK 285
           PC  C G G       ++C  C G G VT+         S C  C G G +    C TC+
Sbjct: 43  PCFPCSGTG------AQVCRFCVGSGNVTVELGGGEKEVSKCINCDGAGSLT---CTTCQ 93

Query: 286 GSGV 289
           GSG+
Sbjct: 94  GSGI 97

Length = 111

>gnl|CDD|224002 COG1076, DjlA, DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

 Score = 37.7 bits (88), Expect = 0.004
 Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 9/70 (12%)

Query: 83  DPYELLGVPENASQD--EIKKAFHMLAKQYHPDANKNNPSAK------RKFQEIRDAYET 134
           D + L G+P     D   +K  +  L + YHPD      S        ++  E+  AY+T
Sbjct: 2   DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPD-RFGKASEAEQRKALQQSAEVNPAYQT 60

Query: 135 LRDSEKRAQY 144
           L+D   RA+Y
Sbjct: 61  LKDPLLRAEY 70

Length = 174

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	448
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	100.0
PRK14296	372	chaperone protein DnaJ; Provisional	100.0
PRK14288	369	chaperone protein DnaJ; Provisional	100.0
PRK14279	392	chaperone protein DnaJ; Provisional	100.0
PRK14286	372	chaperone protein DnaJ; Provisional	100.0
PRK14284	391	chaperone protein DnaJ; Provisional	100.0
PRK14277	386	chaperone protein DnaJ; Provisional	100.0
PRK14298	377	chaperone protein DnaJ; Provisional	100.0
PRK14285	365	chaperone protein DnaJ; Provisional	100.0
PRK14295	389	chaperone protein DnaJ; Provisional	100.0
PRK14282	369	chaperone protein DnaJ; Provisional	100.0
PRK14301	373	chaperone protein DnaJ; Provisional	100.0
PTZ00037	421	DnaJ_C chaperone protein; Provisional	100.0
PRK14278	378	chaperone protein DnaJ; Provisional	100.0
PRK14287	371	chaperone protein DnaJ; Provisional	100.0
PRK14280	376	chaperone protein DnaJ; Provisional	100.0
PRK14276	380	chaperone protein DnaJ; Provisional	100.0
PRK14294	366	chaperone protein DnaJ; Provisional	100.0
PRK14297	380	chaperone protein DnaJ; Provisional	100.0
PRK10767	371	chaperone protein DnaJ; Provisional	100.0
PRK14281	397	chaperone protein DnaJ; Provisional	100.0
PRK14291	382	chaperone protein DnaJ; Provisional	100.0
PRK14300	372	chaperone protein DnaJ; Provisional	100.0
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	100.0
PRK14283	378	chaperone protein DnaJ; Provisional	100.0
PRK14290	365	chaperone protein DnaJ; Provisional	100.0
PRK14289	386	chaperone protein DnaJ; Provisional	100.0
PRK14293	374	chaperone protein DnaJ; Provisional	100.0
PRK14292	371	chaperone protein DnaJ; Provisional	100.0
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	100.0
PRK14299	291	chaperone protein DnaJ; Provisional	100.0
PRK10266	306	curved DNA-binding protein CbpA; Provisional	100.0
KOG0713	336	consensus Molecular chaperone (DnaJ superfamily) [	100.0
TIGR03835	871	termin_org_DnaJ terminal organelle assembly protei	100.0
KOG0715	288	consensus Molecular chaperone (DnaJ superfamily) [	100.0
KOG0714	306	consensus Molecular chaperone (DnaJ superfamily) [	99.88
KOG0716	279	consensus Molecular chaperone (DnaJ superfamily) [	99.78
COG2214	237	CbpA DnaJ-class molecular chaperone [Posttranslati	99.75
PF01556	81	CTDII: DnaJ C terminal domain; InterPro: IPR002939	99.74
KOG0691	296	consensus Molecular chaperone (DnaJ superfamily) [	99.73
PF00226	64	DnaJ: DnaJ domain; InterPro: IPR001623 The prokary	99.73
KOG0718	546	consensus Molecular chaperone (DnaJ superfamily) [	99.71
KOG0717	508	consensus Molecular chaperone (DnaJ superfamily) [	99.71
PTZ00341	1136	Ring-infected erythrocyte surface antigen; Provisi	99.68
KOG0719	264	consensus Molecular chaperone (DnaJ superfamily) [	99.64
smart00271	60	DnaJ DnaJ molecular chaperone homology domain.	99.63
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	99.61
PHA03102	153	Small T antigen; Reviewed	99.6
cd06257	55	DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat sho	99.6
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.58
KOG0721	230	consensus Molecular chaperone (DnaJ superfamily) [	99.57
PRK05014	171	hscB co-chaperone HscB; Provisional	99.47
PRK01356	166	hscB co-chaperone HscB; Provisional	99.45
PRK03578	176	hscB co-chaperone HscB; Provisional	99.44
PRK14282	369	chaperone protein DnaJ; Provisional	99.44
PRK00294	173	hscB co-chaperone HscB; Provisional	99.44
PRK14290	365	chaperone protein DnaJ; Provisional	99.41
PRK14298	377	chaperone protein DnaJ; Provisional	99.38
PRK14294	366	chaperone protein DnaJ; Provisional	99.37
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.37
KOG0720	490	consensus Molecular chaperone (DnaJ superfamily) [	99.36
PRK14285	365	chaperone protein DnaJ; Provisional	99.36
PRK10767	371	chaperone protein DnaJ; Provisional	99.34
KOG0722	329	consensus Molecular chaperone (DnaJ superfamily) [	99.34
PTZ00100	116	DnaJ chaperone protein; Provisional	99.32
PRK14301	373	chaperone protein DnaJ; Provisional	99.32
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	99.27
PRK14287	371	chaperone protein DnaJ; Provisional	99.27
PRK14300	372	chaperone protein DnaJ; Provisional	99.27
PRK14284	391	chaperone protein DnaJ; Provisional	99.26
PRK14288	369	chaperone protein DnaJ; Provisional	99.26
PRK14278	378	chaperone protein DnaJ; Provisional	99.24
PRK09430	267	djlA Dna-J like membrane chaperone protein; Provis	99.23
PRK14286	372	chaperone protein DnaJ; Provisional	99.23
PRK14279	392	chaperone protein DnaJ; Provisional	99.22
PRK14281	397	chaperone protein DnaJ; Provisional	99.22
PRK14280	376	chaperone protein DnaJ; Provisional	99.21
PRK14276	380	chaperone protein DnaJ; Provisional	99.21
PRK14293	374	chaperone protein DnaJ; Provisional	99.21
PRK14292	371	chaperone protein DnaJ; Provisional	99.19
PRK14289	386	chaperone protein DnaJ; Provisional	99.19
PRK14297	380	chaperone protein DnaJ; Provisional	99.18
PHA02624	647	large T antigen; Provisional	99.17
PRK14295	389	chaperone protein DnaJ; Provisional	99.16
PRK14291	382	chaperone protein DnaJ; Provisional	99.15
PRK14277	386	chaperone protein DnaJ; Provisional	99.15
PRK14296	372	chaperone protein DnaJ; Provisional	99.13
PRK01773	173	hscB co-chaperone HscB; Provisional	99.11
PTZ00037	421	DnaJ_C chaperone protein; Provisional	99.11
PF00684	66	DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR0	99.1
PRK14283	378	chaperone protein DnaJ; Provisional	99.1
COG5407	610	SEC63 Preprotein translocase subunit Sec63 [Intrac	99.09
TIGR00714	157	hscB Fe-S protein assembly co-chaperone HscB. This	99.0
KOG1150	250	consensus Predicted molecular chaperone (DnaJ supe	98.86
PRK14299	291	chaperone protein DnaJ; Provisional	98.72
COG5269	379	ZUO1 Ribosome-associated chaperone zuotin [Transla	98.67
PF01556	81	CTDII: DnaJ C terminal domain; InterPro: IPR002939	98.62
PRK10266	306	curved DNA-binding protein CbpA; Provisional	98.6
PLN03165	111	chaperone protein dnaJ-related; Provisional	98.38
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.31
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	98.27
KOG0568	342	consensus Molecular chaperone (DnaJ superfamily) [	98.25
TIGR02642	186	phage_xxxx uncharacterized phage protein. This unc	98.11
TIGR03835	871	termin_org_DnaJ terminal organelle assembly protei	97.81
KOG0723	112	consensus Molecular chaperone (DnaJ superfamily) [	97.69
KOG3192	168	consensus Mitochondrial J-type chaperone [Posttran	97.63
COG1107	715	Archaea-specific RecJ-like exonuclease, contains D	97.44
PF00684	66	DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR0	97.32
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	96.44
PLN03165	111	chaperone protein dnaJ-related; Provisional	96.43
KOG2813	406	consensus Predicted molecular chaperone, contains	96.18
COG1107	715	Archaea-specific RecJ-like exonuclease, contains D	96.16
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	96.0
TIGR02642	186	phage_xxxx uncharacterized phage protein. This unc	95.64
KOG2813	406	consensus Predicted molecular chaperone, contains	95.12
KOG0431	453	consensus Auxilin-like protein and related protein	94.93
PF03656	127	Pam16: Pam16; InterPro: IPR005341 The Pam16 protei	92.48
KOG2824	281	consensus Glutaredoxin-related protein [Posttransl	88.93
KOG0715	288	consensus Molecular chaperone (DnaJ superfamily) [	86.62
cd03031	147	GRX_GRX_like Glutaredoxin (GRX) family, GRX-like d	84.31

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.9e-86  Score=655.95  Aligned_cols=329  Identities=44%  Similarity=0.799  Sum_probs=291.5

Q ss_pred             CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhcccCCCCCccccC
Q 013183           80 SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSA  159 (448)
Q Consensus        80 ~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~g~~~~~~~~  159 (448)
                      +.+|||+||||+++||.+|||+|||+||++||||+|+.+++|+++|++|+|||||||||+||++||+||..+.++..   
T Consensus         2 ~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~~gg---   78 (371)
T COG0484           2 AKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFKAGG---   78 (371)
T ss_pred             CccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccccCC---
Confidence            46799999999999999999999999999999999998899999999999999999999999999999887654211   


Q ss_pred             CCCCCccccCCCCCceecccccccccccchhcccccc--------ccccCCCCcEEEeeeehhhhcccccceeeeceeee
Q 013183          160 GDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFED--------ETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVP  231 (448)
Q Consensus       160 ~~~~~~~~~~~~~~f~~~~~~~f~~~f~~~Fs~~f~~--------~~~~~g~di~~~l~isl~e~~~G~~~~i~~~~~~~  231 (448)
                        ++++.       |.     .|++.|.++|+++|++        ....++.|+.+.|+|||+|||.|+++++.+++.+.
T Consensus        79 --~gg~g-------~~-----~fgg~~~DIF~~~FgGg~~~~~~~~~~~rG~Dl~~~l~isleEa~~G~~~~i~~~~~~~  144 (371)
T COG0484          79 --FGGFG-------FG-----GFGGDFGDIFEDFFGGGGGGRRRPNRPRRGADLRYNLEITLEEAVFGVKKEIRVTRSVT  144 (371)
T ss_pred             --cCCCC-------cC-----CCCCCHHHHHHHhhcCCCcccCCCCCcccCCceEEEEEeEhhhhccCceeeEecceeeE
Confidence              11110       10     0111345566666632        12457899999999999999999999999999999


Q ss_pred             CCCCCCCCccCCCccccCCCccceeEEEeC------CccccCCCcCCceEEeeecceeecCCcEEeceEEEEEEecCCCC
Q 013183          232 CDSCHGRGFPADAKTKICSTCRGIGRVTIP------PFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVD  305 (448)
Q Consensus       232 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~------~~~~~C~~C~G~G~~~~~~C~~C~g~G~~~~~~~l~V~IppG~~  305 (448)
                      |+.|+|+|++.+....+|+.|+|+|++.+.      .++++|+.|+|+|++++++|.+|+|.|++...++|+|+||||+.
T Consensus       145 C~~C~GsGak~gt~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i~~pC~~C~G~G~v~~~~~i~V~IPaGv~  224 (371)
T COG0484         145 CSTCHGSGAKPGTDPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKIIKDPCGKCKGKGRVKKKKSISVNIPAGVD  224 (371)
T ss_pred             CCcCCCCCCCCCCCCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeECCCCCCCCCCCCeEeeeeEEEEECCCCCc
Confidence            999999999999999999999999986543      34789999999999999999999999999999999999999999


Q ss_pred             CCCEEEECCCCCCCCCCCCcccEEEEEEEecCCCcccCCCceEEEeecCHHHHhcCCEEEEeCCCCeEEEEeCCCCCCCc
Q 013183          306 SGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGKVQVKIPKGVQPGQ  385 (448)
Q Consensus       306 ~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~I~l~eAl~G~~~~i~tldG~~~v~ip~g~~~g~  385 (448)
                      +|++|++.|+|+++.+|+++|||||+|.|++|+.|.|+|+||+++++|++.+|++|++++||||||.++|+||+|+++|+
T Consensus       225 ~g~~ir~~g~G~~g~~Ggp~GDLyv~i~v~~h~~F~R~g~dL~~~~~Is~~~AalG~~i~vptl~g~~~l~ip~Gtq~G~  304 (371)
T COG0484         225 DGDRIRLSGEGEAGPNGGPAGDLYVFVHVKPHPIFERDGDDLYCEVPISFTEAALGGEIEVPTLDGRVKLKIPAGTQTGE  304 (371)
T ss_pred             cCCEEEEecCcccCCCCCCCccEEEEEEeecCCCeEECCCceEeccccCHHHHhcCCEEEEEecCCCEEEecCCCCccCc
Confidence            99999999999999889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEcCCCCCCCCCCCCCCcEEEEEEEECCC-----hHHHHHHcCC
Q 013183          386 LLVLRGKGLAKNGLFLDHGDQYVRFRVNFPT-----WQRIVERVRA  426 (448)
Q Consensus       386 ~~~l~g~G~p~~~~~~~~GDL~V~~~V~~P~-----~~~l~~~~~~  426 (448)
                      +++|+|+|||.... ..+|||||+++|++|+     .++|++++.+
T Consensus       305 ~~rl~gkG~p~~~~-~~~GDl~v~v~v~~P~~ls~~q~~lL~~~~~  349 (371)
T COG0484         305 VFRLRGKGMPKLRS-GGRGDLYVRVKVETPKNLSDEQKELLEEFAK  349 (371)
T ss_pred             EEEEcCCCccccCC-CCcCCEEEEEEEEcCCCCCHHHHHHHHHHHH
Confidence            99999999997533 2469999999999999     6666666554

>PRK14296 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=5.1e-78  Score=612.67  Aligned_cols=334  Identities=33%  Similarity=0.638  Sum_probs=285.0

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhcccCCCCCccccCC
Q 013183           81 KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSAG  160 (448)
Q Consensus        81 ~~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~g~~~~~~~~~  160 (448)
                      ..|||++|||+++|+.+|||+|||+||++||||+|+ +++|+++|++|++||+||+||+||+.||++|+.+.....   +
T Consensus         3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~-~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~~~~~~---~   78 (372)
T PRK14296          3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNK-SPDAHDKMVEINEAADVLLDKDKRKQYDQFGHAAFDGSS---G   78 (372)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-CchHHHHHHHHHHHHHHhcCHHHhhhhhhccchhhcCCC---C
Confidence            469999999999999999999999999999999997 578999999999999999999999999999876543210   0


Q ss_pred             CCCCccccCCCCCceecccc----cccccccchhccccccc-----cccCCCCcEEEeeeehhhhcccccceeeeceeee
Q 013183          161 DAEGFRYAGDAEGFRYAYQT----HFSDSFHKIFSEIFEDE-----TSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVP  231 (448)
Q Consensus       161 ~~~~~~~~~~~~~f~~~~~~----~f~~~f~~~Fs~~f~~~-----~~~~g~di~~~l~isl~e~~~G~~~~i~~~~~~~  231 (448)
                      ...+|      .+|+.+|..    .| +.|.++|+++|++.     ...+++|++++|.|||+|+|+|+++++.+.+.+.
T Consensus        79 ~~~~~------~~~~~~~~~~~~~g~-~~f~d~f~~~fggg~~~~~~~~~g~di~~~l~ltlee~~~G~~~~i~~~~~~~  151 (372)
T PRK14296         79 FSSNF------GDFEDLFSNMGSSGF-SSFTNIFSDFFGSNKSDYQRSTKGQSVSLDIYLTFKELLFGVDKIIELDLLTN  151 (372)
T ss_pred             cCcCC------Ccccccccccccccc-ccchhhhhhhcCCCccCCCCcCCCCCeEEEeeccHHHhhCCeeEEEEEeeeec
Confidence            00011      112211211    11 12456677777531     2346889999999999999999999999999999


Q ss_pred             CCCCCCCCccCCCccccCCCccceeEEEeC--------CccccCCCcCCceEEeeecceeecCCcEEeceEEEEEEecCC
Q 013183          232 CDSCHGRGFPADAKTKICSTCRGIGRVTIP--------PFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAG  303 (448)
Q Consensus       232 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~--------~~~~~C~~C~G~G~~~~~~C~~C~g~G~~~~~~~l~V~IppG  303 (448)
                      |+.|+|+|........+|+.|+|+|.+...        +++++|+.|+|+|++++..|..|+|.|++.+.++++|.||||
T Consensus       152 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G  231 (372)
T PRK14296        152 CSKCFGSGAESNSDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIKNKCKNCKGKGKYLERKKIEVNIPKG  231 (372)
T ss_pred             cCCCCCCccCCCCCCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceeecccccCCCCceEEEEEEEEEEEECCC
Confidence            999999999888888999999999987532        235799999999999999999999999999999999999999


Q ss_pred             CCCCCEEEECCCCCCCCCCCCcccEEEEEEEecCCCcccC-CCceEEEeecCHHHHhcCCEEEEeCCCCeEEEEeCCCCC
Q 013183          304 VDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRD-GADVYVDSNISFTQAILGGKVDVPTLSGKVQVKIPKGVQ  382 (448)
Q Consensus       304 ~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~-G~DL~~~~~I~l~eAl~G~~~~i~tldG~~~v~ip~g~~  382 (448)
                      +++|++|+|+|+|++...++.+|||+|+|+++||+.|+|+ |+||+++++|+|.|||+|+++.|+||||+++|+||++++
T Consensus       232 ~~~G~~i~~~g~G~~~~~~~~~GDL~v~v~v~~h~~F~R~~G~DL~~~~~Isl~eAllG~~~~i~tldG~~~v~ip~~t~  311 (372)
T PRK14296        232 IRPNQQIKLSQKGHASLNNGVNGDLIIDIYLKESKVFEIINNNDILMTYNISYLDAILGNEIIIKTLDGDIKYKLPKSIN  311 (372)
T ss_pred             CCCCCEEEEeccccCCCCCCCCccEEEEEEEeCCCCEEEeCCCcEEEEEecCHHHHhCCCEEEeeCCCCCEEEEECCccC
Confidence            9999999999999998667789999999999999999995 899999999999999999999999999999999999999


Q ss_pred             CCcEEEEcCCCCCCCCCCCCCCcEEEEEEEECCC-----hHHHHHHcC
Q 013183          383 PGQLLVLRGKGLAKNGLFLDHGDQYVRFRVNFPT-----WQRIVERVR  425 (448)
Q Consensus       383 ~g~~~~l~g~G~p~~~~~~~~GDL~V~~~V~~P~-----~~~l~~~~~  425 (448)
                      ||++++|+|+|||.......+|||||+|+|+||+     ++++++++.
T Consensus       312 ~g~~~ri~GkGmP~~~~~~~~GDL~V~~~V~~P~~Ls~~q~~~l~~l~  359 (372)
T PRK14296        312 SNELIIINNKGLYKSINKDKRGDLIIKVNIVVPKNLSKKEKELIEQIY  359 (372)
T ss_pred             CCcEEEEcCCCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHHHHHHHH
Confidence            9999999999999653334579999999999997     445555443

>PRK14288 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.5e-76  Score=601.82  Aligned_cols=325  Identities=32%  Similarity=0.634  Sum_probs=279.1

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhcccCCCCCccccCC
Q 013183           81 KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSAG  160 (448)
Q Consensus        81 ~~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~g~~~~~~~~~  160 (448)
                      ..|||+||||+++||.+|||+|||+||++||||+|+.+++|+++|++|++||+||+||.+|++||+||+.+....   .+
T Consensus         2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~~~~~---~~   78 (369)
T PRK14288          2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKKGLNQA---GA   78 (369)
T ss_pred             CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhcccccccC---CC
Confidence            369999999999999999999999999999999998778899999999999999999999999999987654311   00


Q ss_pred             CCCCccccCCCCCceecccccccccccchhcccccc-------ccccCCCCcEEEeeeehhhhcccccceeeeceeeeCC
Q 013183          161 DAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFED-------ETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCD  233 (448)
Q Consensus       161 ~~~~~~~~~~~~~f~~~~~~~f~~~f~~~Fs~~f~~-------~~~~~g~di~~~l~isl~e~~~G~~~~i~~~~~~~C~  233 (448)
                      ..         ..|.++|+     .|.++|+++|+.       ....+++|++++|.|||+|+|+|+++++.+.+.+.|+
T Consensus        79 ~~---------~~~~~~f~-----~~~~~F~~~fg~g~~~~~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~  144 (369)
T PRK14288         79 SQ---------SDFSDFFE-----DLGSFFEDAFGFGARGSKRQKSSIAPDYLQTIELSFKEAVFGCKKTIKVQYQSVCE  144 (369)
T ss_pred             Cc---------cccccchh-----hHHHHHHhhcCCCCcccCcCCCCCCCCeeEeccccHHHHhCCeEEEEEEEeeccCC
Confidence            00         11222221     122344444431       1134688999999999999999999999999999999


Q ss_pred             CCCCCCccCCCccccCCCccceeEEEeC----CccccCCCcCCceEEeeecceeecCCcEEeceEEEEEEecCCCCCCCE
Q 013183          234 SCHGRGFPADAKTKICSTCRGIGRVTIP----PFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDT  309 (448)
Q Consensus       234 ~C~G~G~~~~~~~~~C~~C~G~G~~~~~----~~~~~C~~C~G~G~~~~~~C~~C~g~G~~~~~~~l~V~IppG~~~G~~  309 (448)
                      .|+|+|.... ...+|+.|+|+|.+...    .++++|+.|.|+|+++...|..|+|.|++.+.++++|.||||+++|++
T Consensus       145 ~C~G~G~~~~-~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IP~G~~~G~~  223 (369)
T PRK14288        145 SCDGTGAKDK-ALETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKIIKTPCQACKGKTYILKDEEIDAIIPEGIDDQNR  223 (369)
T ss_pred             CCCCcccCCC-CCcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEccccCccCCCcceEEEEEEEEEecCCCCCCCCE
Confidence            9999999765 57899999999987543    346799999999999999999999999999999999999999999999


Q ss_pred             EEECCCCCCCCCCCCcccEEEEEEEecCCCcccCCCceEEEeecCHHHHhcCCEEEEeCCCCe-EEEEeCCCCCCCcEEE
Q 013183          310 IRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGK-VQVKIPKGVQPGQLLV  388 (448)
Q Consensus       310 i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~I~l~eAl~G~~~~i~tldG~-~~v~ip~g~~~g~~~~  388 (448)
                      |+|+|+|++.+ ++.+|||+|+|+|++|+.|+|+|+||+++++|+|.|||+|+++.|+||||+ ++|+||+++++|++++
T Consensus       224 i~l~g~G~~~~-~~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~v~tLdG~~l~i~i~~~~~~g~~~~  302 (369)
T PRK14288        224 MVLKNKGNEYE-KGKRGDLYLEARVKEDEHFKREGCDLFIEAPVFFTTIALGHTIKVPSLKGDELELKIPRNARDRQTFA  302 (369)
T ss_pred             EEEccCccCCC-CCCCCCEEEEEEEEECCCcEEeCCEEEEEEecCHHHHhcCCEEEeecCCCCEEEEEeCCCCCCCcEEE
Confidence            99999999965 568999999999999999999999999999999999999999999999997 8999999999999999


Q ss_pred             EcCCCCCCCCCCCCCCcEEEEEEEECCC-----hHHHHHHcC
Q 013183          389 LRGKGLAKNGLFLDHGDQYVRFRVNFPT-----WQRIVERVR  425 (448)
Q Consensus       389 l~g~G~p~~~~~~~~GDL~V~~~V~~P~-----~~~l~~~~~  425 (448)
                      |+|+|||..+. ..+|||||+|+|++|+     ++++++++.
T Consensus       303 i~g~G~p~~~~-~~~GDL~v~~~v~~P~~ls~~q~~~l~~~~  343 (369)
T PRK14288        303 FRNEGVKHPES-SYRGSLIVELQVIYPKSLNKEQQELLEKLH  343 (369)
T ss_pred             EcCCCCCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHH
Confidence            99999997653 2479999999999997     444444443

>PRK14279 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=5.1e-76  Score=601.85  Aligned_cols=334  Identities=36%  Similarity=0.692  Sum_probs=284.9

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhcccCCCCCc-cc--
Q 013183           81 KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSENE-KY--  157 (448)
Q Consensus        81 ~~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~g~~~~-~~--  157 (448)
                      .+|||++|||+++|+.+|||+|||+||++||||+|+++++|+++|++|++||+||+||+||++||+||+.+..+. ..  
T Consensus         8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~~~~~~g~~~~~   87 (392)
T PRK14279          8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRRLFAGGGFGGRR   87 (392)
T ss_pred             ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhhhcccccccccc
Confidence            479999999999999999999999999999999998778899999999999999999999999999986432111 00  


Q ss_pred             --cCCCCCCccccC--CCCCceeccccccc---ccccchhccccccc-------cccCCCCcEEEeeeehhhhcccccce
Q 013183          158 --SAGDAEGFRYAG--DAEGFRYAYQTHFS---DSFHKIFSEIFEDE-------TSHFAPDIQVELVLSFAEAAKGCTKH  223 (448)
Q Consensus       158 --~~~~~~~~~~~~--~~~~f~~~~~~~f~---~~f~~~Fs~~f~~~-------~~~~g~di~~~l~isl~e~~~G~~~~  223 (448)
                        +.+.+.+|.+..  ....|.++|+..++   .+|.++|+.+|++.       ...+++|++++|.|||+|+|+|++++
T Consensus        88 ~~~~~~~~g~~~~~~~~~~d~~~~f~~~~~~~~~~f~d~f~~~fg~~~~~~~~~~~~~g~di~~~l~ltLee~~~G~~~~  167 (392)
T PRK14279         88 FDGGGGFGGFGTGGDGAEFNLNDLFDAAGRGGGGGIGDLFGGLFNRGGGSARPSRPRRGNDLETETTLDFVEAAKGVTMP  167 (392)
T ss_pred             ccCCCCCCCccccccccCcChhhhhcccccccccchhhhhhhhhcCCCcccccCCCCCCCCeEEEEEEEHHHHhCCeEEE
Confidence              000111221100  01123344432111   23556777776521       13468899999999999999999999


Q ss_pred             eeeceeeeCCCCCCCCccCCCccccCCCccceeEEEeC----CccccCCCcCCceEEeeecceeecCCcEEeceEEEEEE
Q 013183          224 VSFDAFVPCDSCHGRGFPADAKTKICSTCRGIGRVTIP----PFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVT  299 (448)
Q Consensus       224 i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~----~~~~~C~~C~G~G~~~~~~C~~C~g~G~~~~~~~l~V~  299 (448)
                      +.+.+.+.|+.|+|+|........+|+.|+|+|.++..    .++++|+.|+|+|++++..|..|+|.|++.+.++++|.
T Consensus       168 v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~~~~~V~  247 (392)
T PRK14279        168 LRLTSPAPCTTCHGSGARPGTSPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSIIEDPCEECKGTGVTTRTRTINVR  247 (392)
T ss_pred             EeeeccccCCCCccccccCCCCCCCCCCCcceEEEEEEecceEEEEecCCCCceeEEeCCcCCCCCCCeEEEEeeeeEEE
Confidence            99999999999999999988888999999999987543    35789999999999999999999999999999999999


Q ss_pred             ecCCCCCCCEEEECCCCCCCCCCCCcccEEEEEEEecCCCcccCCCceEEEeecCHHHHhcCCEEEEeCCCCeEEEEeCC
Q 013183          300 IPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGKVQVKIPK  379 (448)
Q Consensus       300 IppG~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~I~l~eAl~G~~~~i~tldG~~~v~ip~  379 (448)
                      ||||+++|++|+|+|+|++.+.+..+|||+|+|+|+||+.|+|+|+||+++++|+|.+|++|++++|+|+||+++|+||+
T Consensus       248 Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~~ldg~i~v~Ip~  327 (392)
T PRK14279        248 IPPGVEDGQRIRLAGQGEAGLRGAPSGDLYVTVHVRPDKVFGRDGDDLTVTVPVSFTELALGSTLSVPTLDGPVGVKVPA  327 (392)
T ss_pred             eCCCCCCCcEEEEeCCccCCCCCCCCCCEEEEEEEecCCcceeecCcEEEEEEccHHHHcCCceEEEEcCCceEEEEECC
Confidence            99999999999999999998777788999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcEEEEcCCCCCCCCCCCCCCcEEEEEEEECCC
Q 013183          380 GVQPGQLLVLRGKGLAKNGLFLDHGDQYVRFRVNFPT  416 (448)
Q Consensus       380 g~~~g~~~~l~g~G~p~~~~~~~~GDL~V~~~V~~P~  416 (448)
                      ++++|++++|+|+|||..+  ..+|||||+|+|.||+
T Consensus       328 g~~~g~~iri~g~G~p~~~--~~~GDL~I~~~v~~P~  362 (392)
T PRK14279        328 GTADGRILRVRGRGVPKRS--GGAGDLLVTVKVAVPP  362 (392)
T ss_pred             CCCCCCEEEECCCCCCCCC--CCCCCEEEEEEEECCC
Confidence            9999999999999999753  3479999999999997

>PRK14286 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.9e-75  Score=594.21  Aligned_cols=332  Identities=33%  Similarity=0.684  Sum_probs=284.0

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhcccCCCCCccccCC
Q 013183           81 KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSAG  160 (448)
Q Consensus        81 ~~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~g~~~~~~~~~  160 (448)
                      ..|||++|||+++|+.+|||+|||+||++||||+|+++++|+++|++|++||+||+||.+|+.||+||+++..... +..
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~-~~~   81 (372)
T PRK14286          3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAGVNAGA-GGF   81 (372)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCchhhcccc-CCC
Confidence            4699999999999999999999999999999999987788999999999999999999999999999876543210 000


Q ss_pred             CCCCccccCCCCCceecccccccccccchhccccccc-----------cccCCCCcEEEeeeehhhhcccccceeeecee
Q 013183          161 DAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFEDE-----------TSHFAPDIQVELVLSFAEAAKGCTKHVSFDAF  229 (448)
Q Consensus       161 ~~~~~~~~~~~~~f~~~~~~~f~~~f~~~Fs~~f~~~-----------~~~~g~di~~~l~isl~e~~~G~~~~i~~~~~  229 (448)
                      ...+|      .+|..+|     +.|.++|+.+|++.           ...+++|++++|.|||+|+|+|+++++.+.+.
T Consensus        82 ~~~~~------~~~~~~~-----~~~~d~f~~ffgg~~~~~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~  150 (372)
T PRK14286         82 GQGAY------TDFSDIF-----GDFGDIFGDFFGGGRGGGSGGGRRSGPQRGSDLRYNLEVSLEDAALGREYKIEIPRL  150 (372)
T ss_pred             CCCCc------ccccccc-----cchhhHHHHhhCCCccCCCcccccCCCCCCCCeeEEEEEEHHHHhCCeeEEEEeecc
Confidence            00001      0111111     12345555555421           13468899999999999999999999999999


Q ss_pred             eeCCCCCCCCccCCCccccCCCccceeEEEeC----CccccCCCcCCceEEeeecceeecCCcEEeceEEEEEEecCCCC
Q 013183          230 VPCDSCHGRGFPADAKTKICSTCRGIGRVTIP----PFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVD  305 (448)
Q Consensus       230 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~----~~~~~C~~C~G~G~~~~~~C~~C~g~G~~~~~~~l~V~IppG~~  305 (448)
                      +.|+.|+|+|........+|+.|+|.|.+...    +++++|+.|+|+|++++..|..|+|.|++.+.++++|.||||++
T Consensus       151 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~  230 (372)
T PRK14286        151 ESCVDCNGSGASKGSSPTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVISNPCKTCGGQGLQEKRRTINIKIPPGVE  230 (372)
T ss_pred             ccCCCCcCCCcCCCCCCccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEecccCCCCCCCcEEecceEEEEEECCCCC
Confidence            99999999999888888899999999987542    35789999999999999999999999999999999999999999


Q ss_pred             CCCEEEECCCCCCCCCCCCcccEEEEEEEecCCCcccCCCceEEEeecCHHHHhcCCEEEEeCCCCe-EEEEeCCCCCCC
Q 013183          306 SGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGK-VQVKIPKGVQPG  384 (448)
Q Consensus       306 ~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~I~l~eAl~G~~~~i~tldG~-~~v~ip~g~~~g  384 (448)
                      +|++|+|+|+|++...+..+|||||+|+|+||+.|+|+|+||+++++|+|.||++|+++.|+||||+ ++|+||+++++|
T Consensus       231 ~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~i~v~ip~g~~~g  310 (372)
T PRK14286        231 TGSRLKVSGEGEAGPNGGPHGDLYVVTHIKKHELFERQGNDLILVRKISLAQAILGAEIEVPTIDGKKAKMKIPEGTESG  310 (372)
T ss_pred             CCCEEEECCccccCCCCCCCceEEEEEEEccCCCEEEecCCEEEEEEECHHHHhCCCEEEEeCCCCCEEEEEeCCccCCC
Confidence            9999999999999876677899999999999999999999999999999999999999999999997 899999999999


Q ss_pred             cEEEEcCCCCCCCCCCCCCCcEEEEEEEECCC-----hHHHHHHcC
Q 013183          385 QLLVLRGKGLAKNGLFLDHGDQYVRFRVNFPT-----WQRIVERVR  425 (448)
Q Consensus       385 ~~~~l~g~G~p~~~~~~~~GDL~V~~~V~~P~-----~~~l~~~~~  425 (448)
                      ++++|+|+|||..+. ..+|||||+|+|.||+     .+++++++.
T Consensus       311 ~~~ri~G~G~P~~~~-~~~GDL~V~~~V~~P~~Ls~~qk~~l~~l~  355 (372)
T PRK14286        311 QVFRLKGHGMPYLGA-YGKGDQHVIVKIEIPKKITRRQRELIEEFA  355 (372)
T ss_pred             cEEEECCCCCCCCCC-CCCCcEEEEEEEECCCCCCHHHHHHHHHHH
Confidence            999999999997643 2579999999999998     444455443

>PRK14284 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=2e-74  Score=590.71  Aligned_cols=341  Identities=35%  Similarity=0.666  Sum_probs=284.6

Q ss_pred             CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhcccCCCCCccccCCC
Q 013183           82 RDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSAGD  161 (448)
Q Consensus        82 ~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~g~~~~~~~~~~  161 (448)
                      .|||+||||+++||.+|||+|||+||++||||+|++++.|+++|++|++||+||+||.+|+.||++|+++......+. .
T Consensus         1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~g~~~~-~   79 (391)
T PRK14284          1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDGPFAGAGGF-G   79 (391)
T ss_pred             CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhccccccccccCCc-C
Confidence            389999999999999999999999999999999998888999999999999999999999999999876542110000 0


Q ss_pred             CCCccc-cCCCCCceecccccccccccchhcccccc-----------ccccCCCCcEEEeeeehhhhcccccceeeecee
Q 013183          162 AEGFRY-AGDAEGFRYAYQTHFSDSFHKIFSEIFED-----------ETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAF  229 (448)
Q Consensus       162 ~~~~~~-~~~~~~f~~~~~~~f~~~f~~~Fs~~f~~-----------~~~~~g~di~~~l~isl~e~~~G~~~~i~~~~~  229 (448)
                      ..+|.. ......|..+|+..|+ .+.++|+.+|++           ....++.|++++|.|||+|+|+|+++++.+.+.
T Consensus        80 ~~g~~~~~~~~~~~~~~f~~~~~-~~~d~f~~~fgg~g~~~~~~~~~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~  158 (391)
T PRK14284         80 GAGMGNMEDALRTFMGAFGGEFG-GGGSFFEGLFGGLGEAFGMRGGPAGARQGASKKVHITLSFEEAAKGVEKELLVSGY  158 (391)
T ss_pred             CCCcCcccchhhhcccccccccc-ccccchhhhccCccccccccccCCCcCCCCCeEEEEEEEHHHHhCCeeEEEEEeee
Confidence            011110 0001112222221111 113455555542           112467899999999999999999999999999


Q ss_pred             eeCCCCCCCCccCCCccccCCCccceeEEEeC----CccccCCCcCCceEEeeecceeecCCcEEeceEEEEEEecCCCC
Q 013183          230 VPCDSCHGRGFPADAKTKICSTCRGIGRVTIP----PFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVD  305 (448)
Q Consensus       230 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~----~~~~~C~~C~G~G~~~~~~C~~C~g~G~~~~~~~l~V~IppG~~  305 (448)
                      +.|+.|+|+|.........|+.|+|+|.+...    .++++|+.|+|.|+++++.|..|+|.|++.+.++++|.||||++
T Consensus       159 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~  238 (391)
T PRK14284        159 KSCDACSGSGANSSQGIKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVITDPCSVCRGQGRIKDKRSVHVHIPAGVD  238 (391)
T ss_pred             ccCCCCcccccCCCCCCeecCccCCeeEEEEEeceEEEEEECCCCCCCCcccCCcCCCCCCcceecceEEEEEEECCCCC
Confidence            99999999999888888999999999987532    35789999999999999999999999999999999999999999


Q ss_pred             CCCEEEECCCCCCCCCCCCcccEEEEEEEecCCCcccCCCceEEEeecCHHHHhcCCEEEEeCCC--CeEEEEeCCCCCC
Q 013183          306 SGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLS--GKVQVKIPKGVQP  383 (448)
Q Consensus       306 ~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~I~l~eAl~G~~~~i~tld--G~~~v~ip~g~~~  383 (448)
                      +|++|+|+|+|++++.++.+|||||+|+++||+.|+|+|+||+++++|+|.+|++|++++|+|+|  +.++|+||+++++
T Consensus       239 ~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tld~g~~i~v~Ip~g~~~  318 (391)
T PRK14284        239 SGMRLKMEGYGDAGQNGAPAGDLYVFIDVEPHPVFERRGDDLILELPIGFVDAALGMKKEIPTLLKEGTCRLTIPEGIQS  318 (391)
T ss_pred             CCCEEEEeccccCCCCCCCCCCEEEEEEEecCCCceeecCCEEEEEEecHHHHhCCCeEEEeecCCCcEEEEEECCccCC
Confidence            99999999999998878889999999999999999999999999999999999999999999999  5689999999999


Q ss_pred             CcEEEEcCCCCCCCCCCCCCCcEEEEEEEECCC-----hHHHHHHcC
Q 013183          384 GQLLVLRGKGLAKNGLFLDHGDQYVRFRVNFPT-----WQRIVERVR  425 (448)
Q Consensus       384 g~~~~l~g~G~p~~~~~~~~GDL~V~~~V~~P~-----~~~l~~~~~  425 (448)
                      |++++|+|+|||..+. ..+|||||+|+|.+|+     .+++++++.
T Consensus       319 g~~~~i~g~G~p~~~~-~~~GDL~V~~~v~~P~~l~~~q~~ll~~l~  364 (391)
T PRK14284        319 GTILKVRGQGFPNVHG-KGRGDLLVRISVETPQNLSEEQKELLRQFA  364 (391)
T ss_pred             CeEEEECCCCCCCCCC-CCCCcEEEEEEEECCCCCCHHHHHHHHHHH
Confidence            9999999999997643 2479999999999997     445555543

>PRK14277 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=2.9e-74  Score=588.62  Aligned_cols=339  Identities=40%  Similarity=0.761  Sum_probs=282.5

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhcccCCCCCccccCC
Q 013183           81 KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSAG  160 (448)
Q Consensus        81 ~~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~g~~~~~~~~~  160 (448)
                      ..|||+||||+++||.+|||+|||+||++||||+|+++++|+++|++|++||+||+||.+|+.||++|+++......+.+
T Consensus         4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~~~   83 (386)
T PRK14277          4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAAFDPGGFGQG   83 (386)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhccccccccccccC
Confidence            46999999999999999999999999999999999877889999999999999999999999999998766532111110


Q ss_pred             CC--CCccccCCCCCceecccccccccccchhccccccc------cccCCCCcEEEeeeehhhhcccccceeeeceeeeC
Q 013183          161 DA--EGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFEDE------TSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPC  232 (448)
Q Consensus       161 ~~--~~~~~~~~~~~f~~~~~~~f~~~f~~~Fs~~f~~~------~~~~g~di~~~l~isl~e~~~G~~~~i~~~~~~~C  232 (448)
                      +.  .++.  .  ..|...+ ..|.+.|.++|+.+|++.      ...+++|++++|.|||+|+|+|+++++.+++.+.|
T Consensus        84 ~~~~~g~~--~--~~~~~~~-~~~~d~f~~~F~~~fgg~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~v~~~r~~~C  158 (386)
T PRK14277         84 GFGQGGFG--G--GGFDFDF-GGFGDIFEDIFGDFFGTGRRRAETGPQKGADIRYDLELTFEEAAFGTEKEIEVERFEKC  158 (386)
T ss_pred             CcCCCCcc--c--cCccccc-cchhHHHHHhhcccccCCCcCCCCCCCCCCCEEEEEEEEHHHHhCCeEEEEEEEeeccC
Confidence            00  1110  0  0010000 011112223333333321      13468899999999999999999999999999999


Q ss_pred             CCCCCCCccCCCccccCCCccceeEEEeC--------CccccCCCcCCceEEeeecceeecCCcEEeceEEEEEEecCCC
Q 013183          233 DSCHGRGFPADAKTKICSTCRGIGRVTIP--------PFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGV  304 (448)
Q Consensus       233 ~~C~G~G~~~~~~~~~C~~C~G~G~~~~~--------~~~~~C~~C~G~G~~~~~~C~~C~g~G~~~~~~~l~V~IppG~  304 (448)
                      +.|+|+|........+|+.|+|.|.++..        ...++|+.|+|+|.+++..|..|+|.|++.+.++++|.||||+
T Consensus       159 ~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~  238 (386)
T PRK14277        159 DVCKGSGAKPGSKPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIITDPCNKCGGTGRIRRRRKIKVNIPAGI  238 (386)
T ss_pred             CCCCCCCcCCCCCCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeeccCCCCCCCCCcEEeeeeEEEEecCCCc
Confidence            99999999888888999999999986532        1357999999999999999999999999999999999999999


Q ss_pred             CCCCEEEECCCCCCCCCCCCcccEEEEEEEecCCCcccCCCceEEEeecCHHHHhcCCEEEEeCCCCeEEEEeCCCCCCC
Q 013183          305 DSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGKVQVKIPKGVQPG  384 (448)
Q Consensus       305 ~~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~I~l~eAl~G~~~~i~tldG~~~v~ip~g~~~g  384 (448)
                      ++|++|+|+|+|++...+..+|||+|+|+|+||+.|+|+|+||+++++|++.||++|+++.|+||||+++|+||+++++|
T Consensus       239 ~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~~v~ip~g~~~g  318 (386)
T PRK14277        239 DDGQMITLRGEGEPGIKGGPNGDLYIVIKVKPHPLFKREGYNVYLEMPITFTDAALGGEIEIPTLDGKVKFTIPEGTQTG  318 (386)
T ss_pred             cCCcEEEEccccccCCCCCCCccEEEEEEEecCCCeEEecCCEEEEEEcCHHHHhCCCEEEEEcCCCCEEEEECCCCCCC
Confidence            99999999999998766677899999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEcCCCCCCCCCCCCCCcEEEEEEEECCC-----hHHHHHHcC
Q 013183          385 QLLVLRGKGLAKNGLFLDHGDQYVRFRVNFPT-----WQRIVERVR  425 (448)
Q Consensus       385 ~~~~l~g~G~p~~~~~~~~GDL~V~~~V~~P~-----~~~l~~~~~  425 (448)
                      ++++|+|+|||..+.. .+|||||+|+|+||+     ++++++++.
T Consensus       319 ~~~ri~g~G~p~~~~~-~~GDL~v~~~V~~P~~Ls~~qk~~l~~l~  363 (386)
T PRK14277        319 TKFRLRGKGIPHLRGR-GRGDQIVKVYIEVPKKLTEKQKELLREFE  363 (386)
T ss_pred             CEEEECCCCCCCCCCC-CCCCEEEEEEEEeCCCCCHHHHHHHHHHH
Confidence            9999999999976432 479999999999998     444455443

>PRK14298 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.8e-74  Score=587.71  Aligned_cols=327  Identities=40%  Similarity=0.705  Sum_probs=282.1

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhcccCCCCCccccCC
Q 013183           81 KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSAG  160 (448)
Q Consensus        81 ~~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~g~~~~~~~~~  160 (448)
                      ..|||+||||+++|+.+|||+|||+||++||||+|+ +++|+++|++|++||+||+||.+|+.||++|+.+..... +  
T Consensus         4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~-~--   79 (377)
T PRK14298          4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNK-EPDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGIDNQY-S--   79 (377)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccC-ChhHHHHHHHHHHHHHHhcchHhhhhhhhcCcccccccc-C--
Confidence            469999999999999999999999999999999997 477899999999999999999999999999876543210 0  


Q ss_pred             CCCCccccCCCCCceecccccccccccchhcccccc------ccccCCCCcEEEeeeehhhhcccccceeeeceeeeCCC
Q 013183          161 DAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFED------ETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDS  234 (448)
Q Consensus       161 ~~~~~~~~~~~~~f~~~~~~~f~~~f~~~Fs~~f~~------~~~~~g~di~~~l~isl~e~~~G~~~~i~~~~~~~C~~  234 (448)
                      +..+|.  +  ..|         ++|.++|+.+|++      ....++.|++++|.|||+|+|+|+++++.+.+.+.|+.
T Consensus        80 ~~~~~~--~--~~~---------~~~~d~f~~~Fgg~~~~~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~  146 (377)
T PRK14298         80 AEDIFR--G--ADF---------GGFGDIFEMFFGGGGRRGRMGPRRGSDLRYDLYITLEEAAFGVRKDIDVPRAERCST  146 (377)
T ss_pred             cccccc--c--CCc---------CcchhhhHhhhcCCCccCCCCCCCCCCEEEEEEEEHHHhhCCeEEEEEEEeeccCCC
Confidence            000110  0  001         1133455555542      12357889999999999999999999999999999999


Q ss_pred             CCCCCccCCCccccCCCccceeEEEeC--------CccccCCCcCCceEEeeecceeecCCcEEeceEEEEEEecCCCCC
Q 013183          235 CHGRGFPADAKTKICSTCRGIGRVTIP--------PFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDS  306 (448)
Q Consensus       235 C~G~G~~~~~~~~~C~~C~G~G~~~~~--------~~~~~C~~C~G~G~~~~~~C~~C~g~G~~~~~~~l~V~IppG~~~  306 (448)
                      |+|+|........+|+.|+|.|.+...        +++++|+.|+|+|++++..|..|+|.|++.+.++++|.||||+++
T Consensus       147 C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IppG~~~  226 (377)
T PRK14298        147 CSGTGAKPGTSPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIESPCPVCSGTGKVRKTRKITVNVPAGADS  226 (377)
T ss_pred             CCCCcccCCCCCCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcccCCCCCCCCCccEEEEEEEEEecCCCCCCC
Confidence            999999988888999999999986532        247899999999999999999999999999999999999999999


Q ss_pred             CCEEEECCCCCCCCCCCCcccEEEEEEEecCCCcccCCCceEEEeecCHHHHhcCCEEEEeCCCCeEEEEeCCCCCCCcE
Q 013183          307 GDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGKVQVKIPKGVQPGQL  386 (448)
Q Consensus       307 G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~I~l~eAl~G~~~~i~tldG~~~v~ip~g~~~g~~  386 (448)
                      |++|+|+|+|++...+..+|||||+|+++||+.|+|+|+||+++++|+|.||++|+++.|+|+||++.|+||+++++|++
T Consensus       227 G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~i~v~ip~g~~~g~~  306 (377)
T PRK14298        227 GLRLKLSGEGEAGSPGAPSGDLYIVLHVKEHDYFERVGDDIISEIPISFTQAALGADIMVPTLYGKVKMNIPPGTQTHSV  306 (377)
T ss_pred             CCEEEEecccCCCCCCCCCcCEEEEEEEecCCCeEEEcCcEEEEEEeCHHHHhCCCeEEEecCCCCEEEEeCCCcccCCE
Confidence            99999999999977778899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEcCCCCCCCCCCCCCCcEEEEEEEECCC-----hHHHHHHcC
Q 013183          387 LVLRGKGLAKNGLFLDHGDQYVRFRVNFPT-----WQRIVERVR  425 (448)
Q Consensus       387 ~~l~g~G~p~~~~~~~~GDL~V~~~V~~P~-----~~~l~~~~~  425 (448)
                      ++|+|+|||..+. ..+|||||+|+|++|+     .++|++++.
T Consensus       307 lri~g~G~p~~~~-~~~GDL~V~~~V~~P~~ls~~~~~ll~~l~  349 (377)
T PRK14298        307 FRLKDKGMPRLHG-HGKGDQLVKVIVKTPTKLTQEQKELLREFD  349 (377)
T ss_pred             EEECCCCCCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHH
Confidence            9999999997643 2479999999999997     444444443

>PRK14285 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=3.7e-74  Score=583.45  Aligned_cols=323  Identities=35%  Similarity=0.669  Sum_probs=281.1

Q ss_pred             CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhcccCCCCCccccCCC
Q 013183           82 RDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSAGD  161 (448)
Q Consensus        82 ~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~g~~~~~~~~~~  161 (448)
                      .|||++|||+++||.+|||+|||+||++||||+|+++++|+++|++|++||+||+||.+|+.||++++.+..+.   . .
T Consensus         3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~~~~~---~-~   78 (365)
T PRK14285          3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHTAFEGG---G-G   78 (365)
T ss_pred             CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcchhccC---C-C
Confidence            69999999999999999999999999999999998878899999999999999999999999999987654311   0 0


Q ss_pred             CCCccccCCCCCceecccccccccccchhccccccc-------cccCCCCcEEEeeeehhhhcccccceeeeceeeeCCC
Q 013183          162 AEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFEDE-------TSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDS  234 (448)
Q Consensus       162 ~~~~~~~~~~~~f~~~~~~~f~~~f~~~Fs~~f~~~-------~~~~g~di~~~l~isl~e~~~G~~~~i~~~~~~~C~~  234 (448)
                      +.++.  ++.++|...    | +.|.++|+.+|++.       ...+++|++++|.|||+|+|+|+++++.+++.+.|+.
T Consensus        79 ~~~~~--~g~~~~~~~----~-~~~~d~f~~~fgg~~~~~~~~~~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~  151 (365)
T PRK14285         79 FEGFS--GGFSGFSDI----F-EDFGDIFDSFFTGNRGQDKNRKHEKGQDLTYQIEISLEDAYLGYKNNINITRNMLCES  151 (365)
T ss_pred             ccccC--CCccccccc----c-ccHHHHHHHhhcCCcCCCCCcCCCCCCCEEEEEEEEHHHhhCCeEEEEEeeecccCCC
Confidence            00110  000111111    1 12446666666531       1346889999999999999999999999999999999


Q ss_pred             CCCCCccCCCccccCCCccceeEEEeC----CccccCCCcCCceEEeeecceeecCCcEEeceEEEEEEecCCCCCCCEE
Q 013183          235 CHGRGFPADAKTKICSTCRGIGRVTIP----PFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDTI  310 (448)
Q Consensus       235 C~G~G~~~~~~~~~C~~C~G~G~~~~~----~~~~~C~~C~G~G~~~~~~C~~C~g~G~~~~~~~l~V~IppG~~~G~~i  310 (448)
                      |+|+|.........|+.|+|+|+++..    +++++|+.|.|.|++++..|..|+|.|++.+.++++|.||||+++|++|
T Consensus       152 C~G~G~~~~~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i  231 (365)
T PRK14285        152 CLGKKSEKGTSPSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKIISNPCKSCKGKGSLKKKETIELKIPAGIDDNQQI  231 (365)
T ss_pred             CCCcccCCCCCCccCCCccCceeEEecCceeEEeeecCCCCCcccccCCCCCCCCCCCEEeccEEEEEEECCCCCCCCEE
Confidence            999999888888999999999987643    3578999999999999999999999999999999999999999999999


Q ss_pred             EECCCCCCCCCCCCcccEEEEEEEecCCCcccCCCceEEEeecCHHHHhcCCEEEEeCCCCe-EEEEeCCCCCCCcEEEE
Q 013183          311 RVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGK-VQVKIPKGVQPGQLLVL  389 (448)
Q Consensus       311 ~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~I~l~eAl~G~~~~i~tldG~-~~v~ip~g~~~g~~~~l  389 (448)
                      +|+|+|++.+.+..+|||||+|++++|+.|+|+|+||+++++|+|.||++|++++|+|+||+ ++|+||+++++|++++|
T Consensus       232 ~~~g~G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~dL~~~~~Isl~eAl~G~~~~i~tldG~~v~V~Ip~g~~~g~~irl  311 (365)
T PRK14285        232 KMRGKGSVNPDNQQYGDLYIKILIKPHKIFKRNGKDLYATLPISFTQAALGKEIKIQTIASKKIKIKIPKGTENDEQIII  311 (365)
T ss_pred             EEeeccccCCCCCCCCCEEEEEEEecCCCeEEeccceEEEEecCHHHHhCCCEEEEECCCCCEEEEEeCCCcCCCcEEEE
Confidence            99999999877777899999999999999999999999999999999999999999999996 89999999999999999


Q ss_pred             cCCCCCCCCCCCCCCcEEEEEEEECCC
Q 013183          390 RGKGLAKNGLFLDHGDQYVRFRVNFPT  416 (448)
Q Consensus       390 ~g~G~p~~~~~~~~GDL~V~~~V~~P~  416 (448)
                      +|+|||..+.. .+|||||+|+|++|+
T Consensus       312 ~GkG~p~~~~~-~~GDL~V~~~v~~P~  337 (365)
T PRK14285        312 KNEGMPILHTE-KFGNLILIIKIKTPK  337 (365)
T ss_pred             CCCCccCCCCC-CCCCEEEEEEEECCC
Confidence            99999976432 469999999999997

>PRK14295 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=7.1e-74  Score=585.47  Aligned_cols=343  Identities=36%  Similarity=0.695  Sum_probs=286.8

Q ss_pred             CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhh----cccCCCCCc
Q 013183           80 SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDR----RRSRGSENE  155 (448)
Q Consensus        80 ~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~----~~~~g~~~~  155 (448)
                      +..|||+||||+++||.+|||+|||+||++||||+|+.+++|+++|++|++||+||+||.+|+.||+    ||+.+....
T Consensus         7 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~g~~~~   86 (389)
T PRK14295          7 IEKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNGGFRPG   86 (389)
T ss_pred             cccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhcccccccC
Confidence            3569999999999999999999999999999999998778899999999999999999999999999    876554311


Q ss_pred             cccCCCCCCccccCCCCCceeccc----ccccccccchhcccccc----ccccCCCCcEEEeeeehhhhcccccceeeec
Q 013183          156 KYSAGDAEGFRYAGDAEGFRYAYQ----THFSDSFHKIFSEIFED----ETSHFAPDIQVELVLSFAEAAKGCTKHVSFD  227 (448)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~f~~~~~----~~f~~~f~~~Fs~~f~~----~~~~~g~di~~~l~isl~e~~~G~~~~i~~~  227 (448)
                      . +.+...+|.++ ..+.|..+++    ..|++.|.++|+.+|++    ....+++|++++|.|||+|+|+|+++++.++
T Consensus        87 ~-~~~~~~~~~~~-~~~~f~~~~~~~~~~~~~~~f~d~f~~~fg~~~~~~~~~~g~di~~~l~lsLee~~~G~~k~i~~~  164 (389)
T PRK14295         87 P-GGGGGGGFNFD-LGDLFGGGAQGGGGAGGGGGLGDVFGGLFNRGGRRTQPRRGADVESEVTLSFTEAIDGATVPLRLT  164 (389)
T ss_pred             C-CCCCCCCCCcc-cccccccccccccccccccchhhhhcccccCCCCCCCCCCCCCEEEEEEEEHHHHhCCceEEEEee
Confidence            0 00000111110 0011111100    01122245566666652    1234688999999999999999999999999


Q ss_pred             eeeeCCCCCCCCccCCCccccCCCccceeEEEeC----CccccCCCcCCceEEeeecceeecCCcEEeceEEEEEEecCC
Q 013183          228 AFVPCDSCHGRGFPADAKTKICSTCRGIGRVTIP----PFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAG  303 (448)
Q Consensus       228 ~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~----~~~~~C~~C~G~G~~~~~~C~~C~g~G~~~~~~~l~V~IppG  303 (448)
                      +.+.|+.|+|+|........+|+.|+|+|.+...    .++++|+.|+|+|++++..|..|.|.|++.+.++++|.||||
T Consensus       165 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G  244 (389)
T PRK14295        165 SQAPCPACSGTGAKNGTTPRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIADDPCLVCKGSGRAKSSRTMQVRIPAG  244 (389)
T ss_pred             ccccCCCCcccccCCCCCCcCCCCCCCEeEEEEEecceEEEEecCCCcceeEEeccCCCCCCCCceEeeeeEEEEEeCCC
Confidence            9999999999999988888999999999987543    247799999999999999999999999999999999999999


Q ss_pred             CCCCCEEEECCCCCCCCCCCCcccEEEEEEEecCCCcccCCCceEEEeecCHHHHhcCCEEEEeCCCC-eEEEEeCCCCC
Q 013183          304 VDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSG-KVQVKIPKGVQ  382 (448)
Q Consensus       304 ~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~I~l~eAl~G~~~~i~tldG-~~~v~ip~g~~  382 (448)
                      +++|++|+|+|+|++...+..+|||+|+|+++||+.|+|+|+||+++++|+|.+|++|++++|+|+|| .++|+||++++
T Consensus       245 ~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~tldG~~~~v~ip~g~~  324 (389)
T PRK14295        245 VSDGQRIRLRGKGAPGERGGPAGDLYVVVHVDPHPVFGRSGDNLTVTVPVTFPEAALGAEVRVPTLGGPPVTVKLPPGTP  324 (389)
T ss_pred             CCCCCEEEEcccccCCCCCCCCccEEEEEEEecCCCEEEecCCEEEEEeecHHHHhCCCeEEEECCCCCEEEEEECCccC
Confidence            99999999999999977777899999999999999999999999999999999999999999999999 58999999999


Q ss_pred             CCcEEEEcCCCCCCCCCCCCCCcEEEEEEEECCC-----hHHHHHHcCC
Q 013183          383 PGQLLVLRGKGLAKNGLFLDHGDQYVRFRVNFPT-----WQRIVERVRA  426 (448)
Q Consensus       383 ~g~~~~l~g~G~p~~~~~~~~GDL~V~~~V~~P~-----~~~l~~~~~~  426 (448)
                      +|++++|+|+|||..+  ..+|||||+|+|.||+     ++++++++..
T Consensus       325 ~g~~iri~G~G~p~~~--~~~GDL~i~~~v~~P~~Ls~~qk~~l~~l~~  371 (389)
T PRK14295        325 NGRVLRVRGKGAVRKD--GTRGDLLVTVEVAVPKDLSGKAREALEAFRE  371 (389)
T ss_pred             CCcEEEECCCCcCCCC--CCCCCEEEEEEEECCCCCCHHHHHHHHHHHh
Confidence            9999999999999753  3479999999999998     4555555443

>PRK14282 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.2e-73  Score=581.21  Aligned_cols=326  Identities=37%  Similarity=0.689  Sum_probs=278.4

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hhHHHHHHHHHHHHHHhhhhhhhhhhhhcccCCCCCccccC
Q 013183           81 KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNN-PSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSA  159 (448)
Q Consensus        81 ~~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~g~~~~~~~~  159 (448)
                      ..|||++|||+++||.+|||+|||+||++||||+|+++ ++|+++|++|++||+||+||.+|+.||+++..+......+.
T Consensus         3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~~~~~~~~~   82 (369)
T PRK14282          3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVGEQPPYQET   82 (369)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCccccccccccC
Confidence            46999999999999999999999999999999999864 67899999999999999999999999999876543210000


Q ss_pred             CCCCCccccCCCCCceecccccccccc-cchhcccccc--------ccccCCCCcEEEeeeehhhhcccccceeeeceee
Q 013183          160 GDAEGFRYAGDAEGFRYAYQTHFSDSF-HKIFSEIFED--------ETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFV  230 (448)
Q Consensus       160 ~~~~~~~~~~~~~~f~~~~~~~f~~~f-~~~Fs~~f~~--------~~~~~g~di~~~l~isl~e~~~G~~~~i~~~~~~  230 (448)
                      ...++|        |.++|.. |.+.| .++|+.+|++        ....+++|++++|.|||+|+|+|+++++.+.+.+
T Consensus        83 ~~~g~~--------~~~~~~~-~~~~~~~d~f~~~fgg~~~~~~~~~~~~~g~di~~~l~~slee~~~G~~~~i~~~r~~  153 (369)
T PRK14282         83 ESGGGF--------FEDIFKD-FENIFNRDIFDIFFGERRTQEEQREYARRGEDIRYEIEVTLSDLINGAEIPVEYDRYE  153 (369)
T ss_pred             CCCCcc--------ccccccc-ccccccchhhhHhhcccCCcccccCCCCCCCCeEEEEEEEHHHhcCCeEEEEEeeecc
Confidence            000111        1111111 11111 1455555542        1134688999999999999999999999999999


Q ss_pred             eCCCCCCCCccCCCccccCCCccceeEEEeC--------CccccCCCcCCceEEeeecceeecCCcEEeceEEEEEEecC
Q 013183          231 PCDSCHGRGFPADAKTKICSTCRGIGRVTIP--------PFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPA  302 (448)
Q Consensus       231 ~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~--------~~~~~C~~C~G~G~~~~~~C~~C~g~G~~~~~~~l~V~Ipp  302 (448)
                      .|+.|+|+|........+|+.|+|+|.+...        .++++|+.|+|+|++++..|.+|+|.|++.+.++++|.|||
T Consensus       154 ~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~  233 (369)
T PRK14282        154 TCPHCGGTGVEPGSGYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPGEYCHECGGSGRIRRRVRTTVKIPA  233 (369)
T ss_pred             cCCCCCccCCCCCCCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCCCCCCCCCCceeEEEEEEEEEEeCC
Confidence            9999999999888888999999999987532        23679999999999999999999999999999999999999


Q ss_pred             CCCCCCEEEECCCCCCCCCCCCcccEEEEEEEecCCCcccCCCceEEEeecCHHHHhcCCEEEEeCCCCe-EEEEeCCCC
Q 013183          303 GVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGK-VQVKIPKGV  381 (448)
Q Consensus       303 G~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~I~l~eAl~G~~~~i~tldG~-~~v~ip~g~  381 (448)
                      |+++|++|+|+|+|++...+..+|||+|+|+++||+.|+|+|+||+++++|+|.||++|+++.|+|+||+ ++|+||+++
T Consensus       234 G~~~G~~i~~~g~G~~~~~~~~~GDl~i~i~v~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~i~v~Ip~g~  313 (369)
T PRK14282        234 GVEDGTVLRITGGGNAGYYGGPYGDLYVIVRVRPDPRFKRSGSDLIYDVTIDYLQAILGTTVEVPLPEGGTTMLKIPPGT  313 (369)
T ss_pred             CCCCCCEEEEecccCCCCCCCCCCCEEEEEEEecCCcEEEecCCEEEEEEeCHHHHhCCCEEEEeCCCCcEEEEEeCCCc
Confidence            9999999999999999877788999999999999999999999999999999999999999999999996 899999999


Q ss_pred             CCCcEEEEcCCCCCCCCCCCCCCcEEEEEEEECCC
Q 013183          382 QPGQLLVLRGKGLAKNGLFLDHGDQYVRFRVNFPT  416 (448)
Q Consensus       382 ~~g~~~~l~g~G~p~~~~~~~~GDL~V~~~V~~P~  416 (448)
                      ++|++++|+|+|||..+. ..+|||||+|+|.+|+
T Consensus       314 ~~g~~iri~GkG~p~~~~-~~~GDL~V~~~v~~P~  347 (369)
T PRK14282        314 QPETVFRLKGKGLPNMRY-GRRGDLIVNVHVEIPK  347 (369)
T ss_pred             CCCCEEEECCCCCCCCCC-CCCCCEEEEEEEECCC
Confidence            999999999999997532 2479999999999997

>PRK14301 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=8.8e-74  Score=582.22  Aligned_cols=329  Identities=42%  Similarity=0.766  Sum_probs=283.2

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhcccCCCCCccccCC
Q 013183           81 KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSAG  160 (448)
Q Consensus        81 ~~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~g~~~~~~~~~  160 (448)
                      ..|||++|||+++||.+|||+|||+||++||||+|+++++|+++|++|++||+||+||.+|+.||++|+.+..+.    +
T Consensus         3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g~~~~----~   78 (373)
T PRK14301          3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGVNGN----G   78 (373)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhccccccccC----C
Confidence            469999999999999999999999999999999998778899999999999999999999999999987654321    1


Q ss_pred             CCCCccccCCCCCceecccccccccccchhccccc--c------ccccCCCCcEEEeeeehhhhcccccceeeeceeeeC
Q 013183          161 DAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFE--D------ETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPC  232 (448)
Q Consensus       161 ~~~~~~~~~~~~~f~~~~~~~f~~~f~~~Fs~~f~--~------~~~~~g~di~~~l~isl~e~~~G~~~~i~~~~~~~C  232 (448)
                      .+++|.  +..+.|         +.|.++|+.+|+  +      ....+++|++++|.|||+|+|+|+++++.+.+.+.|
T Consensus        79 ~~~g~~--~~~~~~---------~~f~d~f~~~fg~g~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C  147 (373)
T PRK14301         79 GFGGFS--SAEDIF---------SHFSDIFGDLFGFSGGGSRRGPRPQAGSDLRYNLTVSFRQAAKGDEVTLRIPKNVTC  147 (373)
T ss_pred             CCCCcc--cccccc---------cchHHHHHHHhhccCcccccCCCCCCCCCEEEEEeccHHHHhCCceEEEEeeecccC
Confidence            111121  000111         112334444443  1      123468899999999999999999999999999999


Q ss_pred             CCCCCCCccCCCccccCCCccceeEEEeC----CccccCCCcCCceEEeeecceeecCCcEEeceEEEEEEecCCCCCCC
Q 013183          233 DSCHGRGFPADAKTKICSTCRGIGRVTIP----PFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGD  308 (448)
Q Consensus       233 ~~C~G~G~~~~~~~~~C~~C~G~G~~~~~----~~~~~C~~C~G~G~~~~~~C~~C~g~G~~~~~~~l~V~IppG~~~G~  308 (448)
                      +.|+|+|........+|+.|+|+|.+...    .++++|+.|+|.|++++..|..|+|.|++.+.++++|.||||+++|+
T Consensus       148 ~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~  227 (373)
T PRK14301        148 DDCGGSGAAPGTSPETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVITHPCPKCKGSGIVQQTRELKVRIPAGVDTGS  227 (373)
T ss_pred             CCCCCcccCCCCCCcccCCccCeeEEEEEeeeEEEEEeCCCCCceeeecCCCCCCCCCCceeccceEEEEEeCCCCcCCC
Confidence            99999999888888899999999987543    24789999999999999999999999999999999999999999999


Q ss_pred             EEEECCCCCCCCCCCCcccEEEEEEEecCCCcccCCCceEEEeecCHHHHhcCCEEEEeCCCCeEEEEeCCCCCCCcEEE
Q 013183          309 TIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGKVQVKIPKGVQPGQLLV  388 (448)
Q Consensus       309 ~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~I~l~eAl~G~~~~i~tldG~~~v~ip~g~~~g~~~~  388 (448)
                      +|+|+|+|++...+..+|||||+|+|++|+.|+|+|+||+++++|+|.+|++|+++.|+|+||+++|+||+++++|++++
T Consensus       228 ~i~~~g~G~~~~~~~~~GDLiv~i~v~~h~~f~r~G~DL~~~~~Isl~eAl~G~~~~v~tldG~i~v~ip~g~~~g~~~r  307 (373)
T PRK14301        228 RLRLRGEGEPGVHGGPPGDLYVVITVEDDKIFQRQGQDLVVTQEISFVQAALGDRIEVPTLDDPVTLDIPKGTQSGEVFR  307 (373)
T ss_pred             EEEEeccccCCCCCCCCcCEEEEEEEEECCCceeecCcEEEEEEecHHHHhCCCeEEEecCCccEEEEECCCcCCCcEEE
Confidence            99999999997767789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcCCCCCCCCCCCCCCcEEEEEEEECCC-----hHHHHHHcC
Q 013183          389 LRGKGLAKNGLFLDHGDQYVRFRVNFPT-----WQRIVERVR  425 (448)
Q Consensus       389 l~g~G~p~~~~~~~~GDL~V~~~V~~P~-----~~~l~~~~~  425 (448)
                      |+|+|||..+. ..+|||||+|+|.+|+     .+++++++.
T Consensus       308 i~g~G~p~~~~-~~~GDL~I~~~V~~P~~l~~~q~~~l~~l~  348 (373)
T PRK14301        308 LRGKGLPYLGS-SQKGDLLVEVSVVTPTKLTKRQEELLREFE  348 (373)
T ss_pred             EcCCCCCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHH
Confidence            99999997643 2479999999999997     444444444

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=100.00  E-value=5.2e-74  Score=588.79  Aligned_cols=318  Identities=30%  Similarity=0.534  Sum_probs=272.6

Q ss_pred             CCCCCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhcccCCCCCc
Q 013183           76 SCYSSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSENE  155 (448)
Q Consensus        76 ~~~~~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~g~~~~  155 (448)
                      +..+...|||++|||+++||.+|||+|||+||++||||+|++    .++|++|++||+||+||.||+.||++|..+..+.
T Consensus        22 ~~~~~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~----~e~F~~i~~AYevLsD~~kR~~YD~~G~~~~~~~   97 (421)
T PTZ00037         22 KREVDNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD----PEKFKEISRAYEVLSDPEKRKIYDEYGEEGLEGG   97 (421)
T ss_pred             cccccchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch----HHHHHHHHHHHHHhccHHHHHHHhhhcchhcccC
Confidence            344556899999999999999999999999999999999863    4899999999999999999999999976553210


Q ss_pred             cccCCCCCCccccCCCCCceecccccccccccchhcccccc----ccccCCCCcEEEeeeehhhhcccccceeeeceeee
Q 013183          156 KYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFED----ETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVP  231 (448)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~f~~~~~~~f~~~f~~~Fs~~f~~----~~~~~g~di~~~l~isl~e~~~G~~~~i~~~~~~~  231 (448)
                          .  .      + ..|            .++|+.+|++    ....+++|+.+.|.|||+|+|+|+++++.+.+.+.
T Consensus        98 ----~--~------~-~d~------------~d~f~~~Fggg~~~~~~~rg~di~~~l~vtLee~~~G~~~~i~~~r~~~  152 (421)
T PTZ00037         98 ----E--Q------P-ADA------------SDLFDLIFGGGRKPGGKKRGEDIVSHLKVTLEQIYNGAMRKLAINKDVI  152 (421)
T ss_pred             ----C--C------C-cch------------hhhHHHhhccccccccccCCCCEEEEeeeeHHHHhCCCceEEEeecccc
Confidence                0  0      0 011            1233333331    12356899999999999999999999999999999


Q ss_pred             CCCCCCCCccCCCccccCCCccceeEEEeC--------CccccCCCcCCceEEee--ecceeecCCcEEeceEEEEEEec
Q 013183          232 CDSCHGRGFPADAKTKICSTCRGIGRVTIP--------PFTSTCSTCKGLGRIIK--DHCMTCKGSGVVDGVKEVKVTIP  301 (448)
Q Consensus       232 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~--------~~~~~C~~C~G~G~~~~--~~C~~C~g~G~~~~~~~l~V~Ip  301 (448)
                      |+.|+|+|.... ...+|+.|+|.|.++..        +++++|+.|+|+|+++.  ++|..|+|.|++.+.++++|.||
T Consensus       153 C~~C~G~G~~~~-~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~v~~~~~l~V~Ip  231 (421)
T PTZ00037        153 CANCEGHGGPKD-AFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPESKKCKNCSGKGVKKTRKILEVNID  231 (421)
T ss_pred             ccccCCCCCCCC-CCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceeccccccCCcCCCcceeeeeeEEEEeeC
Confidence            999999998644 57899999999975321        24679999999999985  89999999999999999999999


Q ss_pred             CCCCCCCEEEECCCCCCCCCCCCcccEEEEEEEecCCCcccCCCceEEEeecCHHHHhcCCEEEEeCCCCe-EEEEeCCC
Q 013183          302 AGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGK-VQVKIPKG  380 (448)
Q Consensus       302 pG~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~I~l~eAl~G~~~~i~tldG~-~~v~ip~g  380 (448)
                      ||+.+|++|+|+|+|++.+ ++.||||||+|+++||+.|+|+|+||+++++|+|.|||+|+++.|+||||+ +.|+||++
T Consensus       232 ~G~~dG~~I~~~G~Gd~~~-~~~pGDLiv~I~~~ph~~F~R~G~DL~~~~~Isl~eAllG~~i~I~tLdG~~l~I~ip~g  310 (421)
T PTZ00037        232 KGVPNQHKITFHGEADEKP-NEIPGNVVFILNEKPHDTFKREGGDLFITKKISLYEALTGFVFYITHLDGRKLLVNTPPG  310 (421)
T ss_pred             CCCCCCcEEEEecccCCCC-CCCCCcEEEEEEecCCCCcEEeCCeEEEEEeCCHHHHhcCCEEEeeCCCCCeEEEEeCCC
Confidence            9999999999999999965 578999999999999999999999999999999999999999999999997 89999988


Q ss_pred             --CCCCcEEEEcCCCCCCCCCCCCCCcEEEEEEEECC--C-----hHHHHHHc
Q 013183          381 --VQPGQLLVLRGKGLAKNGLFLDHGDQYVRFRVNFP--T-----WQRIVERV  424 (448)
Q Consensus       381 --~~~g~~~~l~g~G~p~~~~~~~~GDL~V~~~V~~P--~-----~~~l~~~~  424 (448)
                        ++||++++|+|+|||..+.+..+|||||+|+|.||  +     .+++++++
T Consensus       311 ~vt~pg~~~~I~geGmP~~~~~~~rGDL~V~~~V~~P~~~~Ls~~qk~ll~~l  363 (421)
T PTZ00037        311 EVVKPGDIKVINNEGMPTYKSPFKKGNLYVTFEVIFPVDRKFTNEEKEILKSL  363 (421)
T ss_pred             cccCCCcEEEeCCCCcccCCCCCCCCCEEEEEEEEcCCCCCCCHHHHHHHHHh
Confidence              99999999999999976443458999999999999  5     44555543

>PRK14278 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.5e-73  Score=581.48  Aligned_cols=324  Identities=36%  Similarity=0.661  Sum_probs=278.8

Q ss_pred             CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhcccCCCCCccccCCC
Q 013183           82 RDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSAGD  161 (448)
Q Consensus        82 ~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~g~~~~~~~~~~  161 (448)
                      .|||+||||+++|+.+|||+|||+||++||||+|+ +++|+++|++|++||+||+||.+|+.||++|+.+..+.    ..
T Consensus         3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~-~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~~~~~~----~~   77 (378)
T PRK14278          3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNP-DEEAQEKFKEISVAYEVLSDPEKRRIVDLGGDPLESAG----GG   77 (378)
T ss_pred             CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCC-cHHHHHHHHHHHHHHHHhchhhhhhhhhccCCcccccc----CC
Confidence            59999999999999999999999999999999998 57899999999999999999999999999976422110    00


Q ss_pred             CCCccccCCCCCceecccccccccccchhccccccc--------cccCCCCcEEEeeeehhhhcccccceeeeceeeeCC
Q 013183          162 AEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFEDE--------TSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCD  233 (448)
Q Consensus       162 ~~~~~~~~~~~~f~~~~~~~f~~~f~~~Fs~~f~~~--------~~~~g~di~~~l~isl~e~~~G~~~~i~~~~~~~C~  233 (448)
                      ..+|.     .+|         ++|.++|+.+|++.        ...+++|+++.|.|||+|+|+|+++++.+++.+.|+
T Consensus        78 ~~g~~-----~~f---------~~~~d~f~~ffgg~g~~~~~~~~~~~g~d~~~~l~vtLee~~~G~~~~i~~~~~~~C~  143 (378)
T PRK14278         78 GGGFG-----GGF---------GGLGDVFEAFFGGGAASRGPRGRVRPGSDSLLRMRLDLEECATGVTKQVTVDTAVLCD  143 (378)
T ss_pred             CCCCC-----cCc---------CchhHHHHHHhCCCCCCCCCccCCCCCCCeEEEEEEEHHHhcCCeEEEEEEEeeccCC
Confidence            01110     011         01234455555421        124688999999999999999999999999999999


Q ss_pred             CCCCCCccCCCccccCCCccceeEEEeC--------CccccCCCcCCceEEeeecceeecCCcEEeceEEEEEEecCCCC
Q 013183          234 SCHGRGFPADAKTKICSTCRGIGRVTIP--------PFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVD  305 (448)
Q Consensus       234 ~C~G~G~~~~~~~~~C~~C~G~G~~~~~--------~~~~~C~~C~G~G~~~~~~C~~C~g~G~~~~~~~l~V~IppG~~  305 (448)
                      .|+|+|........+|+.|+|+|.+...        ..+++|+.|+|.|++++.+|..|+|.|++.+.++++|.||||++
T Consensus       144 ~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~  223 (378)
T PRK14278        144 RCHGKGTAGDSKPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIPDPCHECAGDGRVRARREITVKIPAGVG  223 (378)
T ss_pred             CCcCccCCCCCCceecCCccCceEEEEEEeccceeEEEEEECCCCCccceeeCCCCCCCCCceeEecceEEEEEECCCCC
Confidence            9999999888888999999999986532        13679999999999999999999999999999999999999999


Q ss_pred             CCCEEEECCCCCCCCCCCCcccEEEEEEEecCCCcccCCCceEEEeecCHHHHhcCCEEEEeCC-CCeEEEEeCCCCCCC
Q 013183          306 SGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTL-SGKVQVKIPKGVQPG  384 (448)
Q Consensus       306 ~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~I~l~eAl~G~~~~i~tl-dG~~~v~ip~g~~~g  384 (448)
                      +|++|+|+|+|++.+.+..+|||+|+|+++||+.|+|+|+||+++++|+|.+|++|+++.|+|+ ++.+.|+||+++++|
T Consensus       224 ~G~~i~~~g~G~~~~~~~~~GDL~v~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tld~~~i~v~ip~g~~~g  303 (378)
T PRK14278        224 DGMRIRLAAQGEVGPGGGPAGDLYVEVHEQPHDVFVRDGDDLHCTVSVPMVDAALGTTVTVEAILDGPSEITIPPGTQPG  303 (378)
T ss_pred             CCcEEEEccCcCCCCCCCCCCCEEEEEEECcCCCEEEcCCCEEEEEecCHHHHhcCCeEEEecCCCCeEEEEeCCCcCCC
Confidence            9999999999999877778899999999999999999999999999999999999999999999 556899999999999


Q ss_pred             cEEEEcCCCCCCCCCCCCCCcEEEEEEEECCC-----hHHHHHHcC
Q 013183          385 QLLVLRGKGLAKNGLFLDHGDQYVRFRVNFPT-----WQRIVERVR  425 (448)
Q Consensus       385 ~~~~l~g~G~p~~~~~~~~GDL~V~~~V~~P~-----~~~l~~~~~  425 (448)
                      ++++|+|+|||..+. ..+|||||+|+|+||+     .+++++++.
T Consensus       304 ~~lrl~g~G~p~~~~-~~~GDL~V~~~V~~P~~Ls~~qk~~l~~~~  348 (378)
T PRK14278        304 SVITLRGRGMPHLRS-GGRGDLHAHVEVVVPTRLDHEDIELLRELK  348 (378)
T ss_pred             cEEEECCCCCCCCCC-CCCCCEEEEEEEEcCCCCCHHHHHHHHHHH
Confidence            999999999997533 2579999999999997     455555554

>PRK14287 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.4e-73  Score=580.33  Aligned_cols=323  Identities=39%  Similarity=0.731  Sum_probs=279.2

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhcccCCCCCccccCC
Q 013183           81 KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSAG  160 (448)
Q Consensus        81 ~~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~g~~~~~~~~~  160 (448)
                      ..|||++|||+++||.+|||+|||+||++||||+|+ +++|+++|++|++||+||+||.+|+.||+||+++..... +.+
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~-~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~~~~~~-~~~   80 (371)
T PRK14287          3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNK-APDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTDPNQGF-GGG   80 (371)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-ChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCccccccc-CCC
Confidence            469999999999999999999999999999999997 478899999999999999999999999999876543210 000


Q ss_pred             CCCCccccCCCCCceecccccccccccchhcccccc-------ccccCCCCcEEEeeeehhhhcccccceeeeceeeeCC
Q 013183          161 DAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFED-------ETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCD  233 (448)
Q Consensus       161 ~~~~~~~~~~~~~f~~~~~~~f~~~f~~~Fs~~f~~-------~~~~~g~di~~~l~isl~e~~~G~~~~i~~~~~~~C~  233 (448)
                      .+.         .|.         +|.++|+.+|++       ....+++|++++|.|||+|+|.|+++++.+.+.+.|+
T Consensus        81 ~~~---------~f~---------~~~d~f~~~fgg~~~~~~~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~C~  142 (371)
T PRK14287         81 GAG---------DFG---------GFSDIFDMFFGGGGGRRNPNAPRQGADLQYTMTLEFKEAVFGKETEIEIPREETCG  142 (371)
T ss_pred             CCc---------ccc---------chHHHHHhhhccccCCCCCCCCCCCCCEEEEEEEEHHHhcCCeEEEEEEeeeccCC
Confidence            000         110         122344444432       1134688999999999999999999999999999999


Q ss_pred             CCCCCCccCCCccccCCCccceeEEEeC--------CccccCCCcCCceEEeeecceeecCCcEEeceEEEEEEecCCCC
Q 013183          234 SCHGRGFPADAKTKICSTCRGIGRVTIP--------PFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVD  305 (448)
Q Consensus       234 ~C~G~G~~~~~~~~~C~~C~G~G~~~~~--------~~~~~C~~C~G~G~~~~~~C~~C~g~G~~~~~~~l~V~IppG~~  305 (448)
                      .|+|+|........+|+.|+|+|.+...        ..+++|+.|.|+|++++..|..|.|.|++.+.++++|.||||++
T Consensus       143 ~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~  222 (371)
T PRK14287        143 TCHGSGAKPGTKPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIKQKCATCGGKGKVRKRKKINVKVPAGID  222 (371)
T ss_pred             CCCCcccCCCCCCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccccccCCCCCCeeEEeeeEEEEEEECCcCC
Confidence            9999999888888899999999986532        13679999999999999999999999999999999999999999


Q ss_pred             CCCEEEECCCCCCCCCCCCcccEEEEEEEecCCCcccCCCceEEEeecCHHHHhcCCEEEEeCCCCeEEEEeCCCCCCCc
Q 013183          306 SGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGKVQVKIPKGVQPGQ  385 (448)
Q Consensus       306 ~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~I~l~eAl~G~~~~i~tldG~~~v~ip~g~~~g~  385 (448)
                      +|++|+|+|+|++...+..+|||||+|+++||+.|+|+|+||++++.|+|.+|++|++++|+|+||++.|+||+++++|+
T Consensus       223 ~G~~i~~~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldg~i~v~ip~g~~~g~  302 (371)
T PRK14287        223 HGQQLRVSGQGEAGVNGGPPGDLYVVFNVKPHEFFERDGDDIYCEMPLTFPQVALGDEIEVPTLNGKVKLKIPAGTQTGT  302 (371)
T ss_pred             CCCEEEEccCCcCCCCCCCCccEEEEEEEecCCCEEEecCCeEEEEeccHHHHhCCCEEEEEcCCCCEEEEECCCccCCc
Confidence            99999999999998766789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEcCCCCCCCCCCCCCCcEEEEEEEECCC-----hHHHHHHc
Q 013183          386 LLVLRGKGLAKNGLFLDHGDQYVRFRVNFPT-----WQRIVERV  424 (448)
Q Consensus       386 ~~~l~g~G~p~~~~~~~~GDL~V~~~V~~P~-----~~~l~~~~  424 (448)
                      +++|+|+|||..+. ..+|||||+|+|.+|+     .+++++++
T Consensus       303 ~~ri~g~G~p~~~~-~~~GDL~V~~~v~~P~~l~~~q~~ll~~l  345 (371)
T PRK14287        303 SFRLRGKGVPNVHG-RGQGDQHVQVRVVTPKNLTEKEKELMREF  345 (371)
T ss_pred             EEEEcCCCccCCCC-CCCCCEEEEEEEEcCCCCCHHHHHHHHHH
Confidence            99999999997643 2479999999999998     44444444

>PRK14280 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.8e-73  Score=580.93  Aligned_cols=329  Identities=42%  Similarity=0.750  Sum_probs=281.8

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhcccCCCCCccccCC
Q 013183           81 KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSAG  160 (448)
Q Consensus        81 ~~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~g~~~~~~~~~  160 (448)
                      ..|||+||||+++|+.+|||+|||+||++||||+|+ ++.|+++|++|++||+||+||.+|++||+||+++..+.. +. 
T Consensus         3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~-~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~-~~-   79 (376)
T PRK14280          3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINK-EEGADEKFKEISEAYEVLSDDQKRAQYDQFGHAGPNQGF-GG-   79 (376)
T ss_pred             CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCC-CccHHHHHHHHHHHHHHhccHhHHHHHHhcCccccccCc-CC-
Confidence            369999999999999999999999999999999997 467899999999999999999999999999876543210 00 


Q ss_pred             CCCCccccCCCCCceecccccccccccchhcccccc-------ccccCCCCcEEEeeeehhhhcccccceeeeceeeeCC
Q 013183          161 DAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFED-------ETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCD  233 (448)
Q Consensus       161 ~~~~~~~~~~~~~f~~~~~~~f~~~f~~~Fs~~f~~-------~~~~~g~di~~~l~isl~e~~~G~~~~i~~~~~~~C~  233 (448)
                        .+|.    +.+|..    .|  +|.++|+.+|++       ....+++|++++|.|||+|+|+|+++++.+.+.+.|+
T Consensus        80 --~~~~----~~~~~~----~~--~~~d~f~~~fgg~~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~  147 (376)
T PRK14280         80 --GGFG----GGDFGG----GF--GFEDIFSSFFGGGGRRRDPNAPRQGADLQYTMTLTFEEAVFGKEKEIEIPKEETCD  147 (376)
T ss_pred             --CCCC----CCCccc----cc--cchhhHHHHhCCccccCcccccccccCEEEEEEEEHHHHhCCceeEEEEeeeccCC
Confidence              0000    001100    01  133455555542       1124688999999999999999999999999999999


Q ss_pred             CCCCCCccCCCccccCCCccceeEEEeC--------CccccCCCcCCceEEeeecceeecCCcEEeceEEEEEEecCCCC
Q 013183          234 SCHGRGFPADAKTKICSTCRGIGRVTIP--------PFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVD  305 (448)
Q Consensus       234 ~C~G~G~~~~~~~~~C~~C~G~G~~~~~--------~~~~~C~~C~G~G~~~~~~C~~C~g~G~~~~~~~l~V~IppG~~  305 (448)
                      .|+|+|........+|+.|+|.|.+...        .++++|+.|+|+|++++..|..|+|.|++.+.++++|.||||++
T Consensus       148 ~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~i~V~Ip~G~~  227 (376)
T PRK14280        148 TCHGSGAKPGTSKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIKEKCPTCHGKGKVRKRKKINVKIPAGVD  227 (376)
T ss_pred             CCCCcccCCCCCCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCceecCCCCCCCCceEEEEEEEEEEEeCCCCc
Confidence            9999999888888999999999986532        13679999999999999999999999999999999999999999


Q ss_pred             CCCEEEECCCCCCCCCCCCcccEEEEEEEecCCCcccCCCceEEEeecCHHHHhcCCEEEEeCCCCeEEEEeCCCCCCCc
Q 013183          306 SGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGKVQVKIPKGVQPGQ  385 (448)
Q Consensus       306 ~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~I~l~eAl~G~~~~i~tldG~~~v~ip~g~~~g~  385 (448)
                      +|++|+|+|+|++...+..+|||||+|+++||+.|+|+|+||+++++|+|.||++|+++.|+|+||++.|+||+++++|+
T Consensus       228 ~G~~i~l~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldg~i~v~ip~g~~~g~  307 (376)
T PRK14280        228 NGQQIRVSGEGEPGVNGGPAGDLYVVFRVRPHEFFERDGDDIYCEMPLTFAQAALGDEIEVPTLHGKVKLKIPAGTQTGT  307 (376)
T ss_pred             CCcEEEEcccccCCCCCCCCcCEEEEEEEecCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCceEEEEECCCCCCCc
Confidence            99999999999998767789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEcCCCCCCCCCCCCCCcEEEEEEEECCC-----hHHHHHHcC
Q 013183          386 LLVLRGKGLAKNGLFLDHGDQYVRFRVNFPT-----WQRIVERVR  425 (448)
Q Consensus       386 ~~~l~g~G~p~~~~~~~~GDL~V~~~V~~P~-----~~~l~~~~~  425 (448)
                      +++|+|+|||..+. ..+|||||+|+|.||+     .+++++++.
T Consensus       308 ~~~i~g~G~p~~~~-~~~GDL~v~~~v~~P~~Ls~~q~~~l~~l~  351 (376)
T PRK14280        308 QFRLKGKGVPNVRG-YGQGDQYVVVRVVTPTKLTDRQKELLREFA  351 (376)
T ss_pred             EEEEcCCCCCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHH
Confidence            99999999997643 2479999999999997     555555554

>PRK14276 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.5e-73  Score=582.25  Aligned_cols=322  Identities=41%  Similarity=0.707  Sum_probs=278.6

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhcccCCCCCcccc-C
Q 013183           81 KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSENEKYS-A  159 (448)
Q Consensus        81 ~~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~g~~~~~~~-~  159 (448)
                      ..|||+||||+++||.+|||+|||+||++||||+|+ +++|+++|++|++||+||+||.+|++||+||+++..+...+ .
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~-~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~~~~~~~~~~   81 (380)
T PRK14276          3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINK-EPGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAGANGGFGGGA   81 (380)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCC-CcCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCccccCCCCCCC
Confidence            369999999999999999999999999999999997 47789999999999999999999999999987665321100 0


Q ss_pred             CCCCCccccCCCCCceecccccccccccchhcccccc-------ccccCCCCcEEEeeeehhhhcccccceeeeceeeeC
Q 013183          160 GDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFED-------ETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPC  232 (448)
Q Consensus       160 ~~~~~~~~~~~~~~f~~~~~~~f~~~f~~~Fs~~f~~-------~~~~~g~di~~~l~isl~e~~~G~~~~i~~~~~~~C  232 (448)
                      ..+.+|..           .+.| +.|.++|+++|++       ....++.|++++|.|||+|+|+|+++++.+.+.+.|
T Consensus        82 ~~~~~~~~-----------~~~~-~~~~d~f~~~fgg~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~~~~~~C  149 (380)
T PRK14276         82 GGFGGFDG-----------SGGF-GGFEDIFSSFFGGGGARRNPNAPRQGDDLQYRVNLDFEEAIFGKEKEVSYNREATC  149 (380)
T ss_pred             CCCCCccc-----------cccc-cchhhHHHHHhCccccccCcCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeccccC
Confidence            00111110           0011 1244566666652       113468899999999999999999999999999999


Q ss_pred             CCCCCCCccCCCccccCCCccceeEEEeC--------CccccCCCcCCceEEeeecceeecCCcEEeceEEEEEEecCCC
Q 013183          233 DSCHGRGFPADAKTKICSTCRGIGRVTIP--------PFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGV  304 (448)
Q Consensus       233 ~~C~G~G~~~~~~~~~C~~C~G~G~~~~~--------~~~~~C~~C~G~G~~~~~~C~~C~g~G~~~~~~~l~V~IppG~  304 (448)
                      +.|+|+|........+|+.|+|+|.+...        ..+++|+.|+|+|++++..|..|+|.|++.+.++++|.||||+
T Consensus       150 ~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~  229 (380)
T PRK14276        150 HTCNGSGAKPGTSPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIKEPCQTCHGTGHEKQAHTVSVKIPAGV  229 (380)
T ss_pred             CCCcCcccCCCCCCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccccCCCCCCCCceEEEEEEEEEEEeCCCc
Confidence            99999999888888899999999987532        1367999999999999999999999999999999999999999


Q ss_pred             CCCCEEEECCCCCCCCCCCCcccEEEEEEEecCCCcccCCCceEEEeecCHHHHhcCCEEEEeCCCCeEEEEeCCCCCCC
Q 013183          305 DSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGKVQVKIPKGVQPG  384 (448)
Q Consensus       305 ~~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~I~l~eAl~G~~~~i~tldG~~~v~ip~g~~~g  384 (448)
                      ++|++|+|+|+|++...+..+|||+|+|+|+||+.|+|+|+||+++++|+|.||++|++++|+|+||++.|+||+++++|
T Consensus       230 ~~G~~i~l~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tldg~i~v~ip~g~~~g  309 (380)
T PRK14276        230 ETGQQIRLQGQGEAGFNGGPYGDLYVVFRVEPSKKFERDGSTIYYTLPISFVQAALGDTVEVPTVHGDVELKIPAGTQTG  309 (380)
T ss_pred             cCCcEEEEeccccCCCCCCCCcCEEEEEEEEECcceeeecceEEEEEecCHHHHhCCCeEEEEcCCCcEEEEECCCCCCC
Confidence            99999999999999876677899999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEcCCCCCCCCCCCCCCcEEEEEEEECCC
Q 013183          385 QLLVLRGKGLAKNGLFLDHGDQYVRFRVNFPT  416 (448)
Q Consensus       385 ~~~~l~g~G~p~~~~~~~~GDL~V~~~V~~P~  416 (448)
                      ++++|+|+|||..+. ..+|||||+|+|.||+
T Consensus       310 ~~~~i~g~G~p~~~~-~~~GDL~V~~~v~~P~  340 (380)
T PRK14276        310 KKFRLRGKGAPKLRG-GGNGDQHVTVNIVTPT  340 (380)
T ss_pred             CEEEECCCCcCCCCC-CCCCCEEEEEEEECCC
Confidence            999999999997643 2469999999999998

>PRK14294 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.9e-73  Score=579.14  Aligned_cols=319  Identities=41%  Similarity=0.757  Sum_probs=279.2

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhcccCCCCCccccCC
Q 013183           81 KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSAG  160 (448)
Q Consensus        81 ~~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~g~~~~~~~~~  160 (448)
                      ..|||+||||+++|+.+|||+|||+||++||||+|+.+++|+++|++|++||+||+||.+|+.||+||+++..+.     
T Consensus         3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g~~~~-----   77 (366)
T PRK14294          3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGLSGT-----   77 (366)
T ss_pred             CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhccccccCC-----
Confidence            469999999999999999999999999999999998778899999999999999999999999999987654321     


Q ss_pred             CCCCccccCCCCCceecccccccccccchhccccc-c--------ccccCCCCcEEEeeeehhhhcccccceeeeceeee
Q 013183          161 DAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFE-D--------ETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVP  231 (448)
Q Consensus       161 ~~~~~~~~~~~~~f~~~~~~~f~~~f~~~Fs~~f~-~--------~~~~~g~di~~~l~isl~e~~~G~~~~i~~~~~~~  231 (448)
                      .+.++      .+|.++|     +.|.++|+++|+ +        ....+++|++++|.|||+|+|.|+++++.+.+.+.
T Consensus        78 ~~~~~------~~~~~~~-----~~~~d~f~~~fg~g~~~~~~~~~~~~~g~d~~~~l~lslee~~~G~~~~i~~~r~~~  146 (366)
T PRK14294         78 GFSGF------SGFDDIF-----SSFGDIFEDFFGFGGGRRGRSRTAVRAGADLRYDLTLPFLEAAFGTEKEIRIQKLET  146 (366)
T ss_pred             CCCCc------Cccccch-----hhhhhhHHHhhccCCCcCCcccCCCCCCCCceEEEEeeHHHhcCCeEEEEEeeeccc
Confidence            00111      0111111     112344444443 1        12346889999999999999999999999999999


Q ss_pred             CCCCCCCCccCCCccccCCCccceeEEEeC----CccccCCCcCCceEEeeecceeecCCcEEeceEEEEEEecCCCCCC
Q 013183          232 CDSCHGRGFPADAKTKICSTCRGIGRVTIP----PFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSG  307 (448)
Q Consensus       232 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~----~~~~~C~~C~G~G~~~~~~C~~C~g~G~~~~~~~l~V~IppG~~~G  307 (448)
                      |+.|+|+|.........|+.|+|.|.+...    +++++|+.|+|+|+.++..|..|+|.|++.+.++++|.||||+++|
T Consensus       147 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G  226 (366)
T PRK14294        147 CEECHGSGCEPGTSPTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVIVSPCKTCHGQGRVRVSKTVQVKIPAGVDTG  226 (366)
T ss_pred             CCCCCCccccCCCCcccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeecCcCCCCCCCceEeecceeEEEecCCCCcCC
Confidence            999999999888888999999999987532    3578999999999999999999999999999999999999999999


Q ss_pred             CEEEECCCCCCCCCCCCcccEEEEEEEecCCCcccCCCceEEEeecCHHHHhcCCEEEEeCCCCeEEEEeCCCCCCCcEE
Q 013183          308 DTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGKVQVKIPKGVQPGQLL  387 (448)
Q Consensus       308 ~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~I~l~eAl~G~~~~i~tldG~~~v~ip~g~~~g~~~  387 (448)
                      ++|+|+|+|++...++.+|||+|+|+++||+.|+|+|+||++++.|+|.||++|++++|+|+||+++|+||+++++|+++
T Consensus       227 ~~i~~~g~G~~~~~~~~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~~v~ip~g~~~g~~i  306 (366)
T PRK14294        227 SRLRLRGEGEAGVRGGPPGDLYVFLTVEPHEFFERDGNDVHCKVPISFVQAALGAQIEVPTLEGERELKIPKGTQPGDIF  306 (366)
T ss_pred             cEEEEccCccCCCCCCCCCcEEEEEEEccCCcceecCCCEEEEEEeCHHHHhCCCeEEEECCCCcEEEEECCCcCCCCEE
Confidence            99999999999877788999999999999999999999999999999999999999999999999899999999999999


Q ss_pred             EEcCCCCCCCCCCCCCCcEEEEEEEECCC
Q 013183          388 VLRGKGLAKNGLFLDHGDQYVRFRVNFPT  416 (448)
Q Consensus       388 ~l~g~G~p~~~~~~~~GDL~V~~~V~~P~  416 (448)
                      +|+|+|||..+. ..+|||||+|+|.+|+
T Consensus       307 ri~G~G~p~~~~-~~~GDL~V~~~v~~P~  334 (366)
T PRK14294        307 RFKGKGIPSLRG-GGRGDQIIEVEVKVPT  334 (366)
T ss_pred             EECCCCCCCCCC-CCCCCEEEEEEEECCC
Confidence            999999997643 2479999999999997

>PRK14297 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=2.4e-73  Score=581.13  Aligned_cols=323  Identities=39%  Similarity=0.753  Sum_probs=278.6

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhcccCCCCCccccCC
Q 013183           81 KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSAG  160 (448)
Q Consensus        81 ~~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~g~~~~~~~~~  160 (448)
                      ..|||++|||+++|+.+|||+|||+||++||||+|+++++|+++|++|++||+||+||.+|++||++|+.+..+.. + .
T Consensus         3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~~~~~~-~-~   80 (380)
T PRK14297          3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTADFNGAG-G-F   80 (380)
T ss_pred             CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCcccccccC-C-C
Confidence            3699999999999999999999999999999999987788999999999999999999999999999876543210 0 0


Q ss_pred             CCCCccccCCCCCceecccccccccccchhcccccc---------ccccCCCCcEEEeeeehhhhcccccceeeeceeee
Q 013183          161 DAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFED---------ETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVP  231 (448)
Q Consensus       161 ~~~~~~~~~~~~~f~~~~~~~f~~~f~~~Fs~~f~~---------~~~~~g~di~~~l~isl~e~~~G~~~~i~~~~~~~  231 (448)
                      +.++|.      .|.  +. .+ .+|.++|+.+|++         ....+++|++++|.|||+|+|+|+++++.+.+.+.
T Consensus        81 ~~~~~~------~~~--~~-~~-~~~~d~f~~~fgg~~g~~~~~~~~~~kg~di~~~l~vsLee~~~G~~~~i~~~r~~~  150 (380)
T PRK14297         81 GSGGFG------GFD--FS-DM-GGFGDIFDSFFGGGFGSSSRRRNGPQRGADIEYTINLTFEEAVFGVEKEISVTRNEN  150 (380)
T ss_pred             CCCCCC------CcC--cc-cc-cchhHHHHHHhccCccccccccCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeeecc
Confidence            001110      010  00 00 1133445554432         11346889999999999999999999999999999


Q ss_pred             CCCCCCCCccCCCccccCCCccceeEEEeC--------CccccCCCcCCceEEeeecceeecCCcEEeceEEEEEEecCC
Q 013183          232 CDSCHGRGFPADAKTKICSTCRGIGRVTIP--------PFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAG  303 (448)
Q Consensus       232 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~--------~~~~~C~~C~G~G~~~~~~C~~C~g~G~~~~~~~l~V~IppG  303 (448)
                      |+.|+|+|........+|+.|+|.|.+...        .++++|+.|+|+|.+++..|..|+|.|++.+.++++|.||||
T Consensus       151 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~i~V~Ip~G  230 (380)
T PRK14297        151 CETCNGTGAKPGTSPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIEDPCNKCHGKGKVRKNRKIKVNVPAG  230 (380)
T ss_pred             CCCcccccccCCCcCccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcCCCCCCCCCCeEEEeEeEEEEEeCCC
Confidence            999999999888888999999999987532        247899999999999999999999999999999999999999


Q ss_pred             CCCCCEEEECCCCCCCCCCCCcccEEEEEEEecCCCcccCCCceEEEeecCHHHHhcCCEEEEeCCCCeEEEEeCCCCCC
Q 013183          304 VDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGKVQVKIPKGVQP  383 (448)
Q Consensus       304 ~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~I~l~eAl~G~~~~i~tldG~~~v~ip~g~~~  383 (448)
                      +++|++|+|+|+|++...+..+|||||+|+|++|+.|+|+|+||+++++|+|.||++|+++.|+|+||+++|+||+++++
T Consensus       231 ~~~G~~I~l~g~G~~~~~~~~~GDL~v~v~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldg~~~v~ip~g~~~  310 (380)
T PRK14297        231 VDTGNVIPLRGQGEHGKNGGPTGDLYINIRVAPHKTFKRKGFDIYIDKHISFAKAALGTEIKVPTVDGEVKYEVPAGTQP  310 (380)
T ss_pred             CCCCcEEEEecCccCCCCCCCCccEEEEEEEcCCCCEEEeCCCEEEEEEeCHHHHhCCCcEEEEcCCCcEEEEECCCcCC
Confidence            99999999999999977677899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEcCCCCCCCCCCCCCCcEEEEEEEECCC
Q 013183          384 GQLLVLRGKGLAKNGLFLDHGDQYVRFRVNFPT  416 (448)
Q Consensus       384 g~~~~l~g~G~p~~~~~~~~GDL~V~~~V~~P~  416 (448)
                      |++++|+|+|||..+. ..+|||||+|+|+||+
T Consensus       311 g~~~ri~g~G~p~~~~-~~~GDL~v~~~v~~P~  342 (380)
T PRK14297        311 GTVFRLKGKGVPRVNS-TGRGNQYVTVIVDIPK  342 (380)
T ss_pred             CCEEEEcCCCcCCCCC-CCCCcEEEEEEEEcCC
Confidence            9999999999997642 3579999999999997

>PRK10767 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=5.8e-73  Score=577.27  Aligned_cols=320  Identities=45%  Similarity=0.845  Sum_probs=279.0

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhcccCCCCCccccCC
Q 013183           81 KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSAG  160 (448)
Q Consensus        81 ~~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~g~~~~~~~~~  160 (448)
                      ..|||++|||+++||.+|||+|||+||++||||+|+++++|+++|++|++||++|+||.+|+.||++++.+..... +  
T Consensus         3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~~~~~-~--   79 (371)
T PRK10767          3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAFEQGG-G--   79 (371)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhccccccccCC-C--
Confidence            4699999999999999999999999999999999987788999999999999999999999999999876543210 0  


Q ss_pred             CCCCccccCCCCCceecccccccccccchhcccccc------ccccCCCCcEEEeeeehhhhcccccceeeeceeeeCCC
Q 013183          161 DAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFED------ETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDS  234 (448)
Q Consensus       161 ~~~~~~~~~~~~~f~~~~~~~f~~~f~~~Fs~~f~~------~~~~~g~di~~~l~isl~e~~~G~~~~i~~~~~~~C~~  234 (448)
                       ..+|.  + ..+|        ++.|.++|+.+|++      ....+++|++++|+|||+|+|+|+++++.+.+.+.|+.
T Consensus        80 -~~~~~--~-~~~~--------~~~f~~~f~~~fgg~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~v~~~r~~~C~~  147 (371)
T PRK10767         80 -GGGFG--G-GGGF--------GDIFGDIFGDIFGGGRGGGRQRARRGADLRYNMEITLEEAVRGVTKEIRIPTLVTCDT  147 (371)
T ss_pred             -CCCCC--C-cccc--------ccchhhhhhhhccCCccccCCCCCCCCCeEEEEEeehHHhhCCeeEEEeeeecccCCC
Confidence             01110  0 0011        11233444444432      12357899999999999999999999999999999999


Q ss_pred             CCCCCccCCCccccCCCccceeEEEeC----CccccCCCcCCceEEeeecceeecCCcEEeceEEEEEEecCCCCCCCEE
Q 013183          235 CHGRGFPADAKTKICSTCRGIGRVTIP----PFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDTI  310 (448)
Q Consensus       235 C~G~G~~~~~~~~~C~~C~G~G~~~~~----~~~~~C~~C~G~G~~~~~~C~~C~g~G~~~~~~~l~V~IppG~~~G~~i  310 (448)
                      |+|+|.........|+.|+|+|.+...    .++++|+.|.|+|+.++..|..|+|.|++.+.++++|.||||+++|++|
T Consensus       148 C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i  227 (371)
T PRK10767        148 CHGSGAKPGTSPKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKIIKDPCKKCHGQGRVEKEKTLSVKIPAGVDTGDRI  227 (371)
T ss_pred             CCCcccCCCCCCccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeECCCCCCCCCCCceEeeeeeEEEecCCCCCCCcEE
Confidence            999999888888899999999987532    3577999999999999999999999999999999999999999999999


Q ss_pred             EECCCCCCCCCCCCcccEEEEEEEecCCCcccCCCceEEEeecCHHHHhcCCEEEEeCCCCeEEEEeCCCCCCCcEEEEc
Q 013183          311 RVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGKVQVKIPKGVQPGQLLVLR  390 (448)
Q Consensus       311 ~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~I~l~eAl~G~~~~i~tldG~~~v~ip~g~~~g~~~~l~  390 (448)
                      +|+|+|++..++..+|||+|+|+++||+.|+|+|+||++++.|++.+|++|++++|+|+||.++|+||+++++|++++|+
T Consensus       228 ~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~i~v~ip~g~~~g~~~~i~  307 (371)
T PRK10767        228 RLSGEGEAGERGGPAGDLYVQIHVKEHPIFERDGNDLYCEVPISFTTAALGGEIEVPTLDGRVKLKIPEGTQTGKLFRLR  307 (371)
T ss_pred             EEecCccCCCCCCCCcCEEEEEEEeeCCCEEEecCCEEEEEEeCHHHHhCCCeEEEecCCCcEEEEeCCCCCCCCEEEEC
Confidence            99999999776778999999999999999999999999999999999999999999999999899999999999999999


Q ss_pred             CCCCCCCCCCCCCCcEEEEEEEECCC
Q 013183          391 GKGLAKNGLFLDHGDQYVRFRVNFPT  416 (448)
Q Consensus       391 g~G~p~~~~~~~~GDL~V~~~V~~P~  416 (448)
                      |+|||..+. ..+|||||+|+|.+|+
T Consensus       308 g~G~p~~~~-~~~GDL~v~~~v~~P~  332 (371)
T PRK10767        308 GKGVKSVRS-GARGDLYCQVVVETPV  332 (371)
T ss_pred             CCCcCCCCC-CCCCCEEEEEEEECCC
Confidence            999997643 2579999999999997

>PRK14281 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=9e-73  Score=579.20  Aligned_cols=339  Identities=37%  Similarity=0.687  Sum_probs=279.1

Q ss_pred             CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhcccCCCCCccccCCC
Q 013183           82 RDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSAGD  161 (448)
Q Consensus        82 ~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~g~~~~~~~~~~  161 (448)
                      .|||+||||+++|+.+|||+|||+||++||||+++++++|+++|++|++||+||+||.+|+.||++++.+........ .
T Consensus         3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~~~~~~~~~-~   81 (397)
T PRK14281          3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGVGSSAASG-G   81 (397)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccchhhccccccC-C
Confidence            599999999999999999999999999999999987788999999999999999999999999999876543211000 0


Q ss_pred             CCCccccCCCCCceeccc---cccccc--cc----chhccccccc-------cccCCCCcEEEeeeehhhhcccccceee
Q 013183          162 AEGFRYAGDAEGFRYAYQ---THFSDS--FH----KIFSEIFEDE-------TSHFAPDIQVELVLSFAEAAKGCTKHVS  225 (448)
Q Consensus       162 ~~~~~~~~~~~~f~~~~~---~~f~~~--f~----~~Fs~~f~~~-------~~~~g~di~~~l~isl~e~~~G~~~~i~  225 (448)
                      ..+|.  ++...|.++|.   +.|+++  +.    .-|...|++.       ...+++|+++.|.|||+|+|+|+++++.
T Consensus        82 ~~~~~--~~~~~~~d~f~~f~~~Fgg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~  159 (397)
T PRK14281         82 GPGYG--GGGGDFNDIFSAFNDMFGGGARRGGGSPFGFEDVFGGGGRRRRASAGIPGTDLKIRLKLTLEEIAKGVEKTLK  159 (397)
T ss_pred             CCCCC--cCCCCHHHHHHHHHHHhCCCcccccccccccccccCCCcccccccCCCCCCCEEEEEEeEHHHHhCCeEEEEE
Confidence            01110  00011222221   112110  00    0011111111       1236889999999999999999999999


Q ss_pred             eceeeeCCCCCCCCccCCCccccCCCccceeEEEeC--------CccccCCCcCCceEEeeecceeecCCcEEeceEEEE
Q 013183          226 FDAFVPCDSCHGRGFPADAKTKICSTCRGIGRVTIP--------PFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVK  297 (448)
Q Consensus       226 ~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~--------~~~~~C~~C~G~G~~~~~~C~~C~g~G~~~~~~~l~  297 (448)
                      +++.+.|+.|+|+|.... ...+|+.|+|.|.++..        ..+++|+.|+|.|+++++.|..|+|.|++.+.++++
T Consensus       160 ~~r~~~C~~C~G~G~~~~-~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~  238 (397)
T PRK14281        160 IKKQVPCKECNGTGSKTG-ATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVKDRCPACYGEGIKQGEVTVK  238 (397)
T ss_pred             EEeeecCCCCCCcccCCC-CCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeCCCCCCCCCCccEecceEEE
Confidence            999999999999999876 57899999999986532        136799999999999999999999999999999999


Q ss_pred             EEecCCCCCCCEEEECCCCCCCCCCCCcccEEEEEEEecCCCcccCCCceEEEeecCHHHHhcCCEEEEeCCCCeEEEEe
Q 013183          298 VTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGKVQVKI  377 (448)
Q Consensus       298 V~IppG~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~I~l~eAl~G~~~~i~tldG~~~v~i  377 (448)
                      |.||||+++|++|+|+|+|++...+..+|||+|+|+++||+.|+|+|+||+++++|+|.||++|++++|+|+||++.|+|
T Consensus       239 V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldg~i~v~i  318 (397)
T PRK14281        239 VTVPAGVQDGNYLTLRGQGNAGPRGGAPGDLIVVIEEKPHELFVRNGDDVIYNLAVSYPDLVLGTKVEVPTLDGAVKLTI  318 (397)
T ss_pred             EecCCCCCCCCEEEEecccccCCCCCCCCcEEEEEEEcCCCCeEEecCCEEEEEEecHHHHhcCCeEEeecCCccEEEEe
Confidence            99999999999999999999987777899999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCcEEEEcCCCCCCCCCCCCCCcEEEEEEEECCC-----hHHHHHHcC
Q 013183          378 PKGVQPGQLLVLRGKGLAKNGLFLDHGDQYVRFRVNFPT-----WQRIVERVR  425 (448)
Q Consensus       378 p~g~~~g~~~~l~g~G~p~~~~~~~~GDL~V~~~V~~P~-----~~~l~~~~~  425 (448)
                      |+++++|++++|+|+|||..+. ..+|||||+|+|.||+     ++++++++.
T Consensus       319 p~g~~~G~~~ri~g~G~P~~~~-~~~GDL~V~~~V~~P~~Ls~~qk~~l~~l~  370 (397)
T PRK14281        319 PAGTQPETMLRIPGKGIGHLRG-SGRGDQYVRVNVFVPKEVSHQDKELLKELK  370 (397)
T ss_pred             CCccCCCcEEEEcCCCCCCCCC-CCCCCEEEEEEEEcCCCCCHHHHHHHHHHH
Confidence            9999999999999999997542 2579999999999997     444555543

>PRK14291 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=2.7e-72  Score=573.40  Aligned_cols=333  Identities=38%  Similarity=0.691  Sum_probs=275.2

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhcccCCCCCccccCC
Q 013183           81 KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSAG  160 (448)
Q Consensus        81 ~~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~g~~~~~~~~~  160 (448)
                      ..|||++|||+++|+.+|||+|||+||++||||+|++ ++|+++|++|++||+||+||.+|+.||+++..+.........
T Consensus         2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~~   80 (382)
T PRK14291          2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKN-PEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAAFSGSGQQQQ   80 (382)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-ccHHHHHHHHHHHHHHhcCHHHHHHHhhhcccccccccCccc
Confidence            3699999999999999999999999999999999984 778999999999999999999999999998765432110000


Q ss_pred             CCCCccccCCCCCceecccccccc-cccchhccccc--c-----ccccCCCCcEEEeeeehhhhcccccceeeeceeeeC
Q 013183          161 DAEGFRYAGDAEGFRYAYQTHFSD-SFHKIFSEIFE--D-----ETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPC  232 (448)
Q Consensus       161 ~~~~~~~~~~~~~f~~~~~~~f~~-~f~~~Fs~~f~--~-----~~~~~g~di~~~l~isl~e~~~G~~~~i~~~~~~~C  232 (448)
                      ...+|... ....|.++|.+.|+. +|..+|...++  .     ....+++|+++.|.|||+|+|+|+++++.+.+.+.|
T Consensus        81 ~~~~~~~~-~~~~~~d~f~~~f~~fg~~~~fg~~~~~~~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C  159 (382)
T PRK14291         81 GQEGFSDF-GGGNIEDILEDVFDIFGFGDIFGRRRATRERRKTYQRPVKGEDIYQTVEISLEEAYTGTTVSLEVPRYVPC  159 (382)
T ss_pred             cccccccc-cCCCHHHHHHHHHHhccccccccccccccccccccccccCCCCEEEEEEEEHHHhhCCEEEEEEEeeeccC
Confidence            00111100 001122222221100 01111111000  0     112368899999999999999999999999999999


Q ss_pred             CCCCCCCccCCCccccCCCccceeEEEeC----CccccCCCcCCceEEeeecceeecCCcEEeceEEEEEEecCCCCCCC
Q 013183          233 DSCHGRGFPADAKTKICSTCRGIGRVTIP----PFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGD  308 (448)
Q Consensus       233 ~~C~G~G~~~~~~~~~C~~C~G~G~~~~~----~~~~~C~~C~G~G~~~~~~C~~C~g~G~~~~~~~l~V~IppG~~~G~  308 (448)
                      +.|+|+|.........|+.|+|+|.+...    .++++|+.|+|.|. ++..|..|+|.|++.+.++++|.||||+.+|+
T Consensus       160 ~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~-~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~  238 (382)
T PRK14291        160 EACGGTGYDPGSGEKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGV-LREPCSKCNGRGLVIKKETIKVRIPPGVDNGS  238 (382)
T ss_pred             CCCccccCCCCCCCccCCCCCCceEEEEecceEEEEecCCCCCCceE-EccCCCCCCCCceEEeeeEEEEEeCCCCCCCC
Confidence            99999999888888999999999987543    34789999999995 78999999999999999999999999999999


Q ss_pred             EEEECCCCCCCCCCCCcccEEEEEEEecCCCcccCCCceEEEeecCHHHHhcCCEEEEeCCCCe-EEEEeCCCCCCCcEE
Q 013183          309 TIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGK-VQVKIPKGVQPGQLL  387 (448)
Q Consensus       309 ~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~I~l~eAl~G~~~~i~tldG~-~~v~ip~g~~~g~~~  387 (448)
                      +|+|+|+|+++..++.+|||||+|+++||+.|+|+|+||++++.|+|.||++|+++.|+|+||+ ++|+||+++++|+++
T Consensus       239 ~i~~~g~G~~~~~g~~~GDL~v~i~~~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~l~V~Ip~g~~~G~~i  318 (382)
T PRK14291        239 KLRVPGKGHAGRFGGPPGDLYIIVKVKPHPLFERRGDNLYLDVNITVAEAVLGTELEVPLLDGKKEKVKIPPGTKEGDKI  318 (382)
T ss_pred             EEEEecCcCCCCCCCCCccEEEEEEEccCCCeeeecCCeEEEEEeeHHHHhCCCEEEEecCCCCEEEEEECCccCCCCEE
Confidence            9999999999877888999999999999999999999999999999999999999999999996 899999999999999


Q ss_pred             EEcCCCCCCCCCCCCCCcEEEEEEEECCCh
Q 013183          388 VLRGKGLAKNGLFLDHGDQYVRFRVNFPTW  417 (448)
Q Consensus       388 ~l~g~G~p~~~~~~~~GDL~V~~~V~~P~~  417 (448)
                      +|+|+|||..+. ..+|||||+|+|+||+.
T Consensus       319 ~i~G~G~p~~~~-~~~GDL~V~~~V~~P~~  347 (382)
T PRK14291        319 RVPGKGMPRLKG-SGYGDLVVRVHIDVPKI  347 (382)
T ss_pred             EECCCCCCCCCC-CCCCCEEEEEEEEeCCC
Confidence            999999997643 25799999999999973

>PRK14300 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=2e-71  Score=565.11  Aligned_cols=332  Identities=36%  Similarity=0.696  Sum_probs=280.7

Q ss_pred             CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhcccCCCCCccccCCC
Q 013183           82 RDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSAGD  161 (448)
Q Consensus        82 ~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~g~~~~~~~~~~  161 (448)
                      .|||+||||+++||.+|||+|||+||++||||+++ ++.++++|++|++||++|+||.+|+.||++|+++....... +.
T Consensus         3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~-~~   80 (372)
T PRK14300          3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTD-AKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDAFQNQQSR-GG   80 (372)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-CcCHHHHHHHHHHHHHHhhhHhHhhHHHhcccccccccccc-CC
Confidence            59999999999999999999999999999999997 46788999999999999999999999999987654321000 00


Q ss_pred             CCCccccCCCCCceecccccccccccchhccccccc-------cccCCCCcEEEeeeehhhhcccccceeeeceeeeCCC
Q 013183          162 AEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFEDE-------TSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDS  234 (448)
Q Consensus       162 ~~~~~~~~~~~~f~~~~~~~f~~~f~~~Fs~~f~~~-------~~~~g~di~~~l~isl~e~~~G~~~~i~~~~~~~C~~  234 (448)
                      ..++      .+|.    ..|.+.|.++|+.+|++.       ...+++|+++.|.|||+|+|+|+++++.+.+.+.|+.
T Consensus        81 ~g~~------~~~~----~~~~~~f~~~f~~~~gg~~~~~~~~~~~~g~di~~~l~~sLee~~~G~~k~i~~~r~~~C~~  150 (372)
T PRK14300         81 GGNH------GGFH----PDINDIFGDFFSDFMGGSRRSRPTSSKVRGSDLKYNLTINLEEAFHGIEKNISFSSEVKCDT  150 (372)
T ss_pred             CCCC------Cccc----cchhhhHHHHHHhhcCCCCCCCCCcCCCCCCCeeEEEEEEHHHHhCCceEEEEeeeccccCC
Confidence            0000      0010    001112233343333321       1146889999999999999999999999999999999


Q ss_pred             CCCCCccCCCccccCCCccceeEEEeC----CccccCCCcCCceEEeeecceeecCCcEEeceEEEEEEecCCCCCCCEE
Q 013183          235 CHGRGFPADAKTKICSTCRGIGRVTIP----PFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDTI  310 (448)
Q Consensus       235 C~G~G~~~~~~~~~C~~C~G~G~~~~~----~~~~~C~~C~G~G~~~~~~C~~C~g~G~~~~~~~l~V~IppG~~~G~~i  310 (448)
                      |+|+|........+|+.|+|+|.+...    .++.+|+.|+|.|++++..|.+|+|.|++.+.++++|.||||+++|++|
T Consensus       151 C~G~g~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i  230 (372)
T PRK14300        151 CHGSGSEKGETVTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQIIKNPCKKCHGMGRYHKQRNLSVNIPAGVENGTRI  230 (372)
T ss_pred             CCCcccCCCCCCccCCCccCeEEEEEeeceEEEEEeCCCCCccceEeCCCCCCCCCceEEEeeEEEEEEECCCCCCCcEE
Confidence            999999888888999999999987543    2477999999999999999999999999999999999999999999999


Q ss_pred             EECCCCCCCCCCCCcccEEEEEEEecCCCcccCCCceEEEeecCHHHHhcCCEEEEeCCCC-eEEEEeCCCCCCCcEEEE
Q 013183          311 RVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSG-KVQVKIPKGVQPGQLLVL  389 (448)
Q Consensus       311 ~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~I~l~eAl~G~~~~i~tldG-~~~v~ip~g~~~g~~~~l  389 (448)
                      +|+|+|++...+..+|||+|+|+++||+.|+|+|+||++++.|++.+|++|+++.|+|+|| .++|+||+++++|++++|
T Consensus       231 ~l~g~G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~Dl~~~~~Isl~~Al~G~~~~i~~ldg~~i~v~Ip~g~~~g~~iri  310 (372)
T PRK14300        231 RHTGEGEAGIRGGNSGDLYVDIAIKPHDIYKVDGANLHCKLPISFVNAALGGEIEVPVIEGGKVNLTIPAGTQNGDQLRL  310 (372)
T ss_pred             EEeccccCCCCCCCCCCEEEEEEECCCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCCCEEEEEECCccCCCcEEEE
Confidence            9999999977778899999999999999999999999999999999999999999999998 589999999999999999


Q ss_pred             cCCCCCCCCCCCCCCcEEEEEEEECCC-----hHHHHHHcCC
Q 013183          390 RGKGLAKNGLFLDHGDQYVRFRVNFPT-----WQRIVERVRA  426 (448)
Q Consensus       390 ~g~G~p~~~~~~~~GDL~V~~~V~~P~-----~~~l~~~~~~  426 (448)
                      +|+|||..+. ..+|||||+|+|+||+     ++++++++.+
T Consensus       311 ~g~G~p~~~~-~~~GDL~V~~~v~~P~~ls~~qk~~l~~l~~  351 (372)
T PRK14300        311 RSKGMSKMRS-TIRGDMLTHIHVEVPKNLSKRQRELLEEFKK  351 (372)
T ss_pred             CCCCCCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHh
Confidence            9999997532 2479999999999997     5555555543

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=100.00  E-value=3.1e-71  Score=561.76  Aligned_cols=320  Identities=44%  Similarity=0.795  Sum_probs=276.0

Q ss_pred             CcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhcccCCCCCccccCCCC
Q 013183           83 DPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSAGDA  162 (448)
Q Consensus        83 ~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~g~~~~~~~~~~~  162 (448)
                      |||++|||+++|+.+|||+|||+||++||||+++ +++++++|++|++||+||+||.+|+.||+++..+.......  ..
T Consensus         1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~--~~   77 (354)
T TIGR02349         1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNK-DKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGFNGGGGG--GG   77 (354)
T ss_pred             ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCC-CccHHHHHHHHHHHHHHhhChHHHHhhhhcccccccccCcC--CC
Confidence            7999999999999999999999999999999997 57788999999999999999999999999987654321100  00


Q ss_pred             CCccccCCCCCceecccccccccccchhcccccc---------ccccCCCCcEEEeeeehhhhcccccceeeeceeeeCC
Q 013183          163 EGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFED---------ETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCD  233 (448)
Q Consensus       163 ~~~~~~~~~~~f~~~~~~~f~~~f~~~Fs~~f~~---------~~~~~g~di~~~l~isl~e~~~G~~~~i~~~~~~~C~  233 (448)
                      .+|.      +|.   .+.| +.|.++|+.+|++         ....+++|++++|.|||+|+|+|+++++.+++.+.|+
T Consensus        78 ~~~~------~~~---~~~~-~~~~~~f~~~fg~~~g~~~~~~~~~~~~~d~~~~l~vsLee~~~G~~~~i~~~r~~~C~  147 (354)
T TIGR02349        78 GGFN------GFD---IGFF-GDFGDIFGDFFGGGGGSGRRRRSGPRRGEDLRYDLELTFEEAVFGVEKEIEIPRKESCE  147 (354)
T ss_pred             CCcC------Ccc---ccCc-CchhhhHHHHhccCcccCccccCCCCCCCCeEEEEEEEHHHHhCCeeEEEEeecCCcCC
Confidence            0110      000   0001 1133455555542         1234688999999999999999999999999999999


Q ss_pred             CCCCCCccCCCccccCCCccceeEEEeC--------CccccCCCcCCceEEeeecceeecCCcEEeceEEEEEEecCCCC
Q 013183          234 SCHGRGFPADAKTKICSTCRGIGRVTIP--------PFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVD  305 (448)
Q Consensus       234 ~C~G~G~~~~~~~~~C~~C~G~G~~~~~--------~~~~~C~~C~G~G~~~~~~C~~C~g~G~~~~~~~l~V~IppG~~  305 (448)
                      .|+|+|.........|+.|+|.|.++..        +.+++|+.|.|+|+.++..|..|+|.|++.+.++++|.||||++
T Consensus       148 ~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~  227 (354)
T TIGR02349       148 TCHGTGAKPGTDPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIKEPCSTCKGKGRVKERKTITVKIPAGVD  227 (354)
T ss_pred             CCCCCCCCCCCCCccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecCCCCCCCCCCcEecccceEEEEECCCCC
Confidence            9999999888778999999999986532        23679999999999999999999999999999999999999999


Q ss_pred             CCCEEEECCCCCCCCCCCCcccEEEEEEEecCCCcccCCCceEEEeecCHHHHhcCCEEEEeCCCCeEEEEeCCCCCCCc
Q 013183          306 SGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGKVQVKIPKGVQPGQ  385 (448)
Q Consensus       306 ~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~I~l~eAl~G~~~~i~tldG~~~v~ip~g~~~g~  385 (448)
                      +|++|+|+|+|++...+..+|||+|+|++++|+.|+|+|+||++++.|+|.||++|+++.|+|+||.++|+||+++++|+
T Consensus       228 ~G~~i~~~g~G~~~~~~~~~GDl~v~i~v~~h~~f~r~g~DL~~~~~isl~eAl~G~~~~i~~ldG~i~v~ip~g~~~g~  307 (354)
T TIGR02349       228 TGQRLRVSGKGNAGENGGPNGDLYVVIRVKPHKIFERDGNDLYIEVPISFTQAILGGEIEVPTLDGDVKLKIPAGTQSGT  307 (354)
T ss_pred             CCCEEEEecCccCCCCCCCCCCEEEEEEEecCcceEEecCCEEEEEEeCHHHHhCCCeEEEecCCceEEEEECCcccCCc
Confidence            99999999999987667789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEcCCCCCCCCCCCCCCcEEEEEEEECCC
Q 013183          386 LLVLRGKGLAKNGLFLDHGDQYVRFRVNFPT  416 (448)
Q Consensus       386 ~~~l~g~G~p~~~~~~~~GDL~V~~~V~~P~  416 (448)
                      +++|+|+|||..+. ..+|||||+|+|.||+
T Consensus       308 ~~~i~g~G~p~~~~-~~~GDL~i~~~v~~P~  337 (354)
T TIGR02349       308 VFRLKGKGVPRLRG-NGRGDLLVTVKVETPK  337 (354)
T ss_pred             EEEECCCCcCCCCC-CCCCCEEEEEEEECCC
Confidence            99999999997643 2579999999999997

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14283 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=7.5e-71  Score=562.38  Aligned_cols=333  Identities=38%  Similarity=0.698  Sum_probs=280.9

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhcccCCCCCccccCC
Q 013183           81 KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSAG  160 (448)
Q Consensus        81 ~~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~g~~~~~~~~~  160 (448)
                      ..|||++|||+++|+.+|||+|||+||++||||+|++ ++|+++|++|++||+||+||.+|++||++|++|..+.  +..
T Consensus         4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g~~~~--~~~   80 (378)
T PRK14283          4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEE-EGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAGMDGF--SQE   80 (378)
T ss_pred             cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhchhHHHHHHhhhcccccccc--ccc
Confidence            5799999999999999999999999999999999984 7899999999999999999999999999987664321  000


Q ss_pred             CCCCccccCCCCCceecccccccccccchhccc-ccc---ccccCCCCcEEEeeeehhhhcccccceeeeceeeeCCCCC
Q 013183          161 DAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEI-FED---ETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCH  236 (448)
Q Consensus       161 ~~~~~~~~~~~~~f~~~~~~~f~~~f~~~Fs~~-f~~---~~~~~g~di~~~l~isl~e~~~G~~~~i~~~~~~~C~~C~  236 (448)
                        +.|.  .  ..+.+.|.. |..+|.++|+.+ |++   ....++.|++++|.|||+|+|+|+++++.+.+.+.|+.|+
T Consensus        81 --~~~~--~--~~~~~~~~~-~~~~~~~~f~~~~fgg~~~~~~~kg~di~~~l~vsLed~~~G~~~~i~~~r~~~C~~C~  153 (378)
T PRK14283         81 --DIFN--N--INFEDIFQG-FGFGIGNIFDMFGFGGGSRHGPQRGADIYTEVEITLEEAASGVEKDIKVRHTKKCPVCN  153 (378)
T ss_pred             --cccc--c--cCccccccc-cccchhhhccccccCCCCCCCccCCCCeEEEeeeeHHHHhCCcceEEEeeeeccCCCCC
Confidence              0010  0  011111111 111123344433 332   1234788999999999999999999999999999999999


Q ss_pred             CCCccCCCccccCCCccceeEEEeC--------CccccCCCcCCceEEeeecceeecCCcEEeceEEEEEEecCCCCCCC
Q 013183          237 GRGFPADAKTKICSTCRGIGRVTIP--------PFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGD  308 (448)
Q Consensus       237 G~G~~~~~~~~~C~~C~G~G~~~~~--------~~~~~C~~C~G~G~~~~~~C~~C~g~G~~~~~~~l~V~IppG~~~G~  308 (448)
                      |+|.........|+.|+|.|.+...        ..+.+|+.|.|.|+.++..|..|+|.|++.+.++++|.||||+++|+
T Consensus       154 G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IppG~~~G~  233 (378)
T PRK14283        154 GSRAEPGSEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVEKPCSNCHGKGVVRETKTISVKIPAGVETGS  233 (378)
T ss_pred             ccccCCCCCCccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceecCCCCCCCCCceeeccceeEEEEECCCCCCCc
Confidence            9999888888899999999997532        13679999999999999999999999999999999999999999999


Q ss_pred             EEEECCCCCCCCCCCCcccEEEEEEEecCCCcccCCCceEEEeecCHHHHhcCCEEEEeCCCCeEEEEeCCCCCCCcEEE
Q 013183          309 TIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGKVQVKIPKGVQPGQLLV  388 (448)
Q Consensus       309 ~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~I~l~eAl~G~~~~i~tldG~~~v~ip~g~~~g~~~~  388 (448)
                      +|+|+|+|++...+..+|||+|+|+|++|+.|+|+|+||++++.|+|.+|++|+++.|+|+||.+.|+||+++++|++++
T Consensus       234 ~i~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~r~G~DL~~~~~Isl~eAl~G~~~~i~tldG~i~v~ip~g~~~g~~~r  313 (378)
T PRK14283        234 RLRVSGEGEMGDRGGEPGDLYVVIKVKPHKIFRREGANLYYEKPISFVQAALGDTVDVPTIDGPVELKIPAGTQSGTTFR  313 (378)
T ss_pred             EEEEeccccCCCCCCCCccEEEEEEEEcCCCEEEecCCEEEEEecCHHHHhcCCeEEEEcCCceEEEEeCCCCCCCCEEE
Confidence            99999999997767789999999999999999999999999999999999999999999999998999999999999999


Q ss_pred             EcCCCCCCCCCCCCCCcEEEEEEEECCC-----hHHHHHHc
Q 013183          389 LRGKGLAKNGLFLDHGDQYVRFRVNFPT-----WQRIVERV  424 (448)
Q Consensus       389 l~g~G~p~~~~~~~~GDL~V~~~V~~P~-----~~~l~~~~  424 (448)
                      |+|+|||..+. ..+|||||+|+|+||+     ++++++++
T Consensus       314 i~g~G~p~~~~-~~~GdL~v~~~v~~P~~l~~~q~~ll~~~  353 (378)
T PRK14283        314 LKGHGMPSLRW-SGKGNLYVKVKVVVPKKLSPKQKELLREF  353 (378)
T ss_pred             ECCCCCCCCCC-CCCCCEEEEEEEEeCCCCCHHHHHHHHHH
Confidence            99999997542 2479999999999997     44444444

>PRK14290 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=4.9e-70  Score=554.01  Aligned_cols=327  Identities=36%  Similarity=0.638  Sum_probs=270.7

Q ss_pred             CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh-hHHHHHHHHHHHHHHhhhhhhhhhhhhcccCCCCCccccCC
Q 013183           82 RDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNP-SAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSAG  160 (448)
Q Consensus        82 ~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~-~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~g~~~~~~~~~  160 (448)
                      .|||++|||+++|+.+|||+|||+||++||||+++.++ +|+++|++|++||+||+||.+|++||++|+.+..+. .+..
T Consensus         3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~~~~~-~~~~   81 (365)
T PRK14290          3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVDFGAG-GSNF   81 (365)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCcccccC-CCCc
Confidence            59999999999999999999999999999999998664 789999999999999999999999999987654310 0000


Q ss_pred             CCCCccccCCCCCceeccccccccccc-chhccc-cccccccCCCCcEEEeeeehhhhcccccceeeeceeeeCCCCCCC
Q 013183          161 DAEGFRYAGDAEGFRYAYQTHFSDSFH-KIFSEI-FEDETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGR  238 (448)
Q Consensus       161 ~~~~~~~~~~~~~f~~~~~~~f~~~f~-~~Fs~~-f~~~~~~~g~di~~~l~isl~e~~~G~~~~i~~~~~~~C~~C~G~  238 (448)
                      .+.+|.   ....|.++|.+.|++.+. +.|+.. .......+++|++++|.|||+|+|+|+++++.+.+.+.|+.|+|+
T Consensus        82 ~~~~~~---~~~~~~d~f~~~fg~~~~~~~~~~~~~~~~~~~~~~di~~~l~lsLee~~~G~~~~i~~~r~~~C~~C~G~  158 (365)
T PRK14290         82 NWDNFT---HFSDINDIFNQIFGGNFGSDFFSGFGNQQSTRNIDLDIYTNLDISLEDAYYGTEKRIKYRRNAMCPDCSGT  158 (365)
T ss_pred             cccccc---cccchhHHHHHHhcCccccccccccccccCCCCCCCCEEEEEEecHHHhcCCEEEEEEeeecccCCCCccc
Confidence            000110   001122223222221100 001000 000111247899999999999999999999999999999999999


Q ss_pred             CccCCCccccCCCccceeEEEeC--------CccccCCCcCCceEEeeecceeecCCcEEeceEEEEEEecCCCCCCCEE
Q 013183          239 GFPADAKTKICSTCRGIGRVTIP--------PFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDTI  310 (448)
Q Consensus       239 G~~~~~~~~~C~~C~G~G~~~~~--------~~~~~C~~C~G~G~~~~~~C~~C~g~G~~~~~~~l~V~IppG~~~G~~i  310 (448)
                      |.... ...+|+.|+|.|++++.        +++.+|+.|.|.|+.++..|..|+|.|++.+.++++|.||||+.+|++|
T Consensus       159 g~~~~-~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i  237 (365)
T PRK14290        159 GAKNG-KLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIPEEKCPRCNGTGTVVVNEDISVKIPKGATDNLRL  237 (365)
T ss_pred             cCCCC-CCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEccCCCCCCCCceeEEEeeEEEEEECCCCCCCcEE
Confidence            98765 57899999999986532        1357999999999999999999999999999999999999999999999


Q ss_pred             EECCCCCCCCCCCCcccEEEEEEEecCCCcccCCCceEEEeecCHHHHhcCCEEEEeCCCCeEEEEeCCCCCCCcEEEEc
Q 013183          311 RVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGKVQVKIPKGVQPGQLLVLR  390 (448)
Q Consensus       311 ~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~I~l~eAl~G~~~~i~tldG~~~v~ip~g~~~g~~~~l~  390 (448)
                      +|+|+|+.  .++.+|||||+|++++|+.|+|+|+||+++++|+|.+|++|+++.|+|++|.++|+||+++++|++++|+
T Consensus       238 ~~~g~G~~--~~~~~GDL~v~v~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~~~~g~i~V~Ip~g~~~g~~iri~  315 (365)
T PRK14290        238 RVKGKGQS--YGGRTGDLYVVLRVNNDPNIQRINDDLYVDQKINFPQAALGGEIEIKLFREKYNLKIPEGTQPGEVLKIK  315 (365)
T ss_pred             EEccccCC--CCCCCCCEEEEEEEcCCCCEEEecCCEEEEEEeCHHHHhCCCEEEEEcCCceEEEEECCccCCCcEEEEC
Confidence            99999986  4678999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCcEEEEEEEECCC
Q 013183          391 GKGLAKNGLFLDHGDQYVRFRVNFPT  416 (448)
Q Consensus       391 g~G~p~~~~~~~~GDL~V~~~V~~P~  416 (448)
                      |+|||..+. ..+|||||+|+|.+|+
T Consensus       316 g~G~p~~~~-~~~GDL~V~~~V~~P~  340 (365)
T PRK14290        316 GAGMPHLNG-HGSGDLLVRINVEVPK  340 (365)
T ss_pred             CCCCCCCCC-CCCCCEEEEEEEECCC
Confidence            999997643 2479999999999997

>PRK14289 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.7e-69  Score=554.17  Aligned_cols=342  Identities=37%  Similarity=0.634  Sum_probs=281.9

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhcccCCCCCccccCC
Q 013183           81 KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSAG  160 (448)
Q Consensus        81 ~~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~g~~~~~~~~~  160 (448)
                      ..|||++|||+++|+.+|||+|||+||++||||+|+++++|+++|++|++||++|+||.+|++||++++.+..+.. +.+
T Consensus         4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~~~~~~-~~~   82 (386)
T PRK14289          4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAGVGGAA-GGG   82 (386)
T ss_pred             cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccCC-CCC
Confidence            4699999999999999999999999999999999998888999999999999999999999999999876543210 000


Q ss_pred             CCCCccccCCCCCce---ecccccccccccch--hccccccccccCCCCcEEEeeeehhhhcccccceeeeceeeeCCCC
Q 013183          161 DAEGFRYAGDAEGFR---YAYQTHFSDSFHKI--FSEIFEDETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSC  235 (448)
Q Consensus       161 ~~~~~~~~~~~~~f~---~~~~~~f~~~f~~~--Fs~~f~~~~~~~g~di~~~l~isl~e~~~G~~~~i~~~~~~~C~~C  235 (448)
                      .+.+..+ +..+.|.   ++|++.|++ +...  |..........++.|+++.+.|||+|+|+|+++++.+.+.+.|+.|
T Consensus        83 ~~~~~~~-~~~~~f~~f~~~fg~~~gg-~~~~~~~~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C  160 (386)
T PRK14289         83 GFSGEGM-SMEDIFSMFGDIFGGHGGG-FGGFGGFGGGGSQQRVFRGSDLRVKVKLNLKEISTGVEKKFKVKKYVPCSHC  160 (386)
T ss_pred             CCCCCCc-ChhhhhHHhhhhhcccccC-cccccccccccccCCCCCCCCeEEEEEEEHHHhhCCeEEEEEEEeecccCCC
Confidence            0100000 0011111   112211110 0000  0000000123468899999999999999999999999999999999


Q ss_pred             CCCCccCCCccccCCCccceeEEEeC--------CccccCCCcCCceEEeeecceeecCCcEEeceEEEEEEecCCCCCC
Q 013183          236 HGRGFPADAKTKICSTCRGIGRVTIP--------PFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSG  307 (448)
Q Consensus       236 ~G~G~~~~~~~~~C~~C~G~G~~~~~--------~~~~~C~~C~G~G~~~~~~C~~C~g~G~~~~~~~l~V~IppG~~~G  307 (448)
                      +|+|.........|+.|+|.|.++..        .++.+|+.|+|.|++++..|..|.|.|++.+.++++|.||||+++|
T Consensus       161 ~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G  240 (386)
T PRK14289        161 HGTGAEGNNGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIKKKCKKCGGEGIVYGEEVITVKIPAGVAEG  240 (386)
T ss_pred             CCCCCCCCCCCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccccCcCCCCCCCCcEEeeeEEEEEEeCCCCCCC
Confidence            99999888888999999999997542        2367999999999999999999999999999999999999999999


Q ss_pred             CEEEECCCCCCCCCCCCcccEEEEEEEecCCCcccCCCceEEEeecCHHHHhcCCEEEEeCCCCeEEEEeCCCCCCCcEE
Q 013183          308 DTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGKVQVKIPKGVQPGQLL  387 (448)
Q Consensus       308 ~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~I~l~eAl~G~~~~i~tldG~~~v~ip~g~~~g~~~  387 (448)
                      ++|+|+|+|++...+..+|||+|+|++++|+.|+|+|+||++++.|+|.+|++|+++.|+|+||+++|+||+++++|+++
T Consensus       241 ~~i~l~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ldg~i~v~ip~g~~~g~~~  320 (386)
T PRK14289        241 MQLSMNGKGNAGKHGGVNGDLLVVIEEEPHPELIRDENDLIYNLLLSVPTAALGGAVEVPTIDGKAKVKIEAGTQPGKVL  320 (386)
T ss_pred             CEEEEeccccCCCCCCCCccEEEEEEEecCCcccccccceeEEeccCHHHHhCCCeEEeecCCceEEEEECCccCCCcEE
Confidence            99999999998766778999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcCCCCCCCCCCCCCCcEEEEEEEECCC-----hHHHHHHcCC
Q 013183          388 VLRGKGLAKNGLFLDHGDQYVRFRVNFPT-----WQRIVERVRA  426 (448)
Q Consensus       388 ~l~g~G~p~~~~~~~~GDL~V~~~V~~P~-----~~~l~~~~~~  426 (448)
                      +|+|+|||..+. ..+|||||+|+|+||+     ++++++++.+
T Consensus       321 ri~g~G~p~~~~-~~~GDL~v~~~v~~P~~l~~~q~~~l~~l~~  363 (386)
T PRK14289        321 RLRNKGLPSVNG-YGTGDLLVNVSVYIPETLSKEEKQTLEKMEN  363 (386)
T ss_pred             EECCCCcCCCCC-CCCCcEEEEEEEEeCCCCCHHHHHHHHHHHh
Confidence            999999997543 2579999999999997     5555555443

>PRK14293 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=2.5e-69  Score=550.44  Aligned_cols=325  Identities=39%  Similarity=0.722  Sum_probs=273.3

Q ss_pred             CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhcccCCCCCccccCCC
Q 013183           82 RDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSAGD  161 (448)
Q Consensus        82 ~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~g~~~~~~~~~~  161 (448)
                      .|||+||||+++|+.+|||+|||+||++||||+|+ ++.++++|++|++||+||+||.+|+.||.+++.+..+.   . .
T Consensus         3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~-~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g~~~~---~-~   77 (374)
T PRK14293          3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNK-EPGAEDRFKEINRAYEVLSDPETRARYDQFGEAGVSGA---A-G   77 (374)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCC-CcCHHHHHHHHHHHHHHHhchHHHHHHhhccccccccC---C-C
Confidence            59999999999999999999999999999999997 46789999999999999999999999999987654311   0 0


Q ss_pred             CCCccccCCCCCceecccccccccccchhcc---ccccccccCCCCcEEEeeeehhhhcccccceeeeceeeeCCCCCCC
Q 013183          162 AEGFRYAGDAEGFRYAYQTHFSDSFHKIFSE---IFEDETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGR  238 (448)
Q Consensus       162 ~~~~~~~~~~~~f~~~~~~~f~~~f~~~Fs~---~f~~~~~~~g~di~~~l~isl~e~~~G~~~~i~~~~~~~C~~C~G~  238 (448)
                      +.++   ++...|.++|.+.|++ |.. .+.   ........+++|++++|.|||+|+|+|+++++.+++.+.|+.|+|+
T Consensus        78 ~~~~---~~~~~~~d~f~~~fg~-~~~-~~~~~~~~~~~~~~kg~di~~~l~vsLee~~~G~~k~i~~~r~~~C~~C~G~  152 (374)
T PRK14293         78 FPDM---GDMGGFADIFETFFSG-FGG-AGGQGGRRRRRGPQRGDDLRYDLKLDFREAIFGGEKEIRIPHLETCETCRGS  152 (374)
T ss_pred             cCCc---ccccchHHHHHHHhcc-cCC-CCCCCccccccCccCCCCeEEEEEeeHHHHhCCceEEEEeeccccCCCCCCc
Confidence            0000   0001122222221210 000 000   0000123467899999999999999999999999999999999999


Q ss_pred             CccCCCccccCCCccceeEEEeC--------CccccCCCcCCceEEeeecceeecCCcEEeceEEEEEEecCCCCCCCEE
Q 013183          239 GFPADAKTKICSTCRGIGRVTIP--------PFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDTI  310 (448)
Q Consensus       239 G~~~~~~~~~C~~C~G~G~~~~~--------~~~~~C~~C~G~G~~~~~~C~~C~g~G~~~~~~~l~V~IppG~~~G~~i  310 (448)
                      |.........|+.|+|.|.+...        ..+++|+.|.|.|+.++..|.+|.|.|++.+.++++|.||||+++|++|
T Consensus       153 G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~IppG~~~G~~i  232 (374)
T PRK14293        153 GAKPGTGPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIEDPCDACGGQGVKQVTKKLKINIPAGVDTGTRL  232 (374)
T ss_pred             CCCCCCCCeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEeccCCCCCCCCcccccceEEEEEeCCCCCCCCEE
Confidence            99888888899999999986532        1367999999999999999999999999999999999999999999999


Q ss_pred             EECCCCCCCCCCCCcccEEEEEEEecCCCcccCCCceEEEeecCHHHHhcCCEEEEeCCCCeEEEEeCCCCCCCcEEEEc
Q 013183          311 RVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGKVQVKIPKGVQPGQLLVLR  390 (448)
Q Consensus       311 ~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~I~l~eAl~G~~~~i~tldG~~~v~ip~g~~~g~~~~l~  390 (448)
                      +|+|+|++...+..+|||+|+|++++|+.|+|+|+||+++++|++.||++|+++.|+|+||+++|+||+++++|++++|+
T Consensus       233 ~l~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ldG~~~i~ip~~~~~g~~~ri~  312 (374)
T PRK14293        233 RVSGEGDAGLRGGPPGDLYVYLFVKNDPEFRRDGINILSEIKISYLQAILGDTLEVDTVDGPVELTIPAGTQPNTVLTLE  312 (374)
T ss_pred             EEccCccCCCCCCCCcCEEEEEEEeCCCccChhhhceEEEeccCHHHHhCCCEEEecCCCCCEEEEeCCCCCCCCEEEEC
Confidence            99999998766677899999999999999999999999999999999999999999999999899999999999999999


Q ss_pred             CCCCCCCCCCCCCCcEEEEEEEECCC
Q 013183          391 GKGLAKNGLFLDHGDQYVRFRVNFPT  416 (448)
Q Consensus       391 g~G~p~~~~~~~~GDL~V~~~V~~P~  416 (448)
                      |+|||..+..+.+|||||+|+|+||+
T Consensus       313 g~G~p~~~~~~~~GDL~v~~~v~~P~  338 (374)
T PRK14293        313 NKGVPRLGNPVARGDHLITVKVKIPT  338 (374)
T ss_pred             CCCCCCCCCCCCcCCEEEEEEEECCC
Confidence            99999764434579999999999997

>PRK14292 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.2e-67  Score=538.29  Aligned_cols=331  Identities=34%  Similarity=0.605  Sum_probs=272.6

Q ss_pred             CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhcccCCCCCccccCCC
Q 013183           82 RDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSAGD  161 (448)
Q Consensus        82 ~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~g~~~~~~~~~~  161 (448)
                      .|||++|||+++|+.+|||+|||+||++||||+++ +++|+++|++|++||+||+||.+|+.||++|+.+..+. .+.++
T Consensus         2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~-~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~~~~~-~~~~~   79 (371)
T PRK14292          2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNK-EKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAPGAGM-PGGDP   79 (371)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCC-ChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCcccccc-cCCcc
Confidence            49999999999999999999999999999999997 57789999999999999999999999999987652110 00000


Q ss_pred             CCCccccCCCCCceecccccccccccchhccccccccccCCCCcEEEeeeehhhhcccccceeeeceeeeCCCCCCCCcc
Q 013183          162 AEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFEDETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFP  241 (448)
Q Consensus       162 ~~~~~~~~~~~~f~~~~~~~f~~~f~~~Fs~~f~~~~~~~g~di~~~l~isl~e~~~G~~~~i~~~~~~~C~~C~G~G~~  241 (448)
                      +.++.+     .+.++|.+.|++..   +...++.....++.|+++++.|||+|+|+|+++++.+.+.+.|+.|+|+|..
T Consensus        80 ~~~~~~-----d~~d~f~~~fg~~~---~~~~~~~~~~~~g~d~~~~l~~sLee~~~G~~~~v~~~r~~~C~~C~G~G~~  151 (371)
T PRK14292         80 FGGMGF-----DPMDIFEQLFGGAG---FGGGRGRRGPARGDDLETEARITLEQARAGEEVEVEVDRLTECEHCHGSRTE  151 (371)
T ss_pred             cCccCC-----ChHHHHHHhhCCCC---cCCCCCcccccCCCCeEEEEeccHHHHcCCeEEEEEEEeeecCCCCcccccC
Confidence            111100     01122222221100   0000000123468899999999999999999999999999999999999987


Q ss_pred             CCC-ccccCCCccceeEEEeC--------CccccCCCcCCceEEeeecceeecCCcEEeceEEEEEEecCCCCCCCEEEE
Q 013183          242 ADA-KTKICSTCRGIGRVTIP--------PFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDTIRV  312 (448)
Q Consensus       242 ~~~-~~~~C~~C~G~G~~~~~--------~~~~~C~~C~G~G~~~~~~C~~C~g~G~~~~~~~l~V~IppG~~~G~~i~~  312 (448)
                      ... ...+|+.|+|+|.+...        ..+.+|+.|+|.|..++..|..|.|.|++.+.++++|.||||+++|++|+|
T Consensus       152 ~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~  231 (371)
T PRK14292        152 PGGKPPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQIITDPCTVCRGRGRTLKAETVKVKLPRGIDEGYRIRV  231 (371)
T ss_pred             CCCCCCccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceecCCCCCCCCCceEEeecceEEEEECCCCCCCcEEEE
Confidence            654 36899999999987532        136799999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCcccEEEEEEEecCCCcccCCCceEEEeecCHHHHhcCCEEEEeCCCCeEEEEeCCCCCCCcEEEEcCC
Q 013183          313 PEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGKVQVKIPKGVQPGQLLVLRGK  392 (448)
Q Consensus       313 ~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~I~l~eAl~G~~~~i~tldG~~~v~ip~g~~~g~~~~l~g~  392 (448)
                      +|+|++.+.+ . |||||+|++++|+.|+|+|+||++++.|++.||++|+++.|+|+||+..|+||+++++|++++|+|+
T Consensus       232 ~G~G~~~~~~-~-GDL~v~i~v~~h~~f~r~g~dL~~~~~isl~eAl~G~~~~i~tldG~~~v~ip~g~~~g~~~~i~g~  309 (371)
T PRK14292        232 AGMGNEGPGG-N-GDLYVHIEMEPHPELRREQEHLIYEARIGFAKAALGGQITVPTLDGPQVIEVKPGTQHGDLHRLRGQ  309 (371)
T ss_pred             ecCcCCCCCC-C-CCEEEEEEEecCCccccchhceeEEeccCHHHHhCCCeEEEECCCCCEEEecCCCcCCCcEEEECCC
Confidence            9999997544 3 9999999999999999999999999999999999999999999999888999999999999999999


Q ss_pred             CCCCCCCCCCCCcEEEEEEEECCC-----hHHHHHHcC
Q 013183          393 GLAKNGLFLDHGDQYVRFRVNFPT-----WQRIVERVR  425 (448)
Q Consensus       393 G~p~~~~~~~~GDL~V~~~V~~P~-----~~~l~~~~~  425 (448)
                      |||..+. ..+|||||+|+|++|+     .++|++++.
T Consensus       310 G~p~~~~-~~~GDL~V~~~v~~P~~l~~~q~~ll~~~~  346 (371)
T PRK14292        310 GMPRLQG-AGTGDLIVEYEIAVPKQLSPEAREALEAYA  346 (371)
T ss_pred             CCCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHH
Confidence            9997533 2469999999999997     455555543

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.8e-65  Score=499.72  Aligned_cols=308  Identities=32%  Similarity=0.579  Sum_probs=270.4

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhcccCCCCCccccCC
Q 013183           81 KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSAG  160 (448)
Q Consensus        81 ~~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~g~~~~~~~~~  160 (448)
                      ...||+||||+++||.+|||+|||+||++||||||++   +.++|++|++||||||||+||.+||+||+++.++..++  
T Consensus         3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~---~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~g~~~--   77 (337)
T KOG0712|consen    3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD---AGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQGGGGG--   77 (337)
T ss_pred             ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcccCCC--
Confidence            3589999999999999999999999999999999975   68999999999999999999999999998776432111  


Q ss_pred             CCCCccccCCCCCceecccccccccccchhccccccccccCCCCcEEEeeeehhhhcccccceeeeceeeeCCCCCCCCc
Q 013183          161 DAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFEDETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGF  240 (448)
Q Consensus       161 ~~~~~~~~~~~~~f~~~~~~~f~~~f~~~Fs~~f~~~~~~~g~di~~~l~isl~e~~~G~~~~i~~~~~~~C~~C~G~G~  240 (448)
                        +++      ..|+.||+  |         ...+.+...+++|+.+.++|+|+|+|.|.+..+.++++.+|+.|+|.|.
T Consensus        78 --~g~------~~f~~~F~--~---------g~~~~~~~~rg~~~~~~~~~~Le~~y~G~s~kl~l~~~~iCs~C~GsGg  138 (337)
T KOG0712|consen   78 --GGF------GGFSQFFG--F---------GGNGGRGRQRGKDVVHQLKVTLEELYMGKSKKLFLSRNFICSKCSGSGG  138 (337)
T ss_pred             --CCC------ccHHHhcc--C---------CCcCccccccCCCceEEEEEEHHHhhcCCccceecccCccCCcCCCCCC
Confidence              111      11444443  1         0112234456999999999999999999999999999999999999999


Q ss_pred             cCCCccccCCCccceeEEEe---------CCccccCCCcCCceEE--eeecceeecCCcEEeceEEEEEEecCCCCCCCE
Q 013183          241 PADAKTKICSTCRGIGRVTI---------PPFTSTCSTCKGLGRI--IKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDT  309 (448)
Q Consensus       241 ~~~~~~~~C~~C~G~G~~~~---------~~~~~~C~~C~G~G~~--~~~~C~~C~g~G~~~~~~~l~V~IppG~~~G~~  309 (448)
                      ..... ..|+.|.|+|..+.         ++++.+|..|+|.|.+  .++.|+.|.|.++++..+.++|.|+||+.++++
T Consensus       139 ksg~~-~~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~~~~kd~C~~C~G~~~v~~kkil~v~V~~g~~~~~k  217 (337)
T KOG0712|consen  139 KSGSA-PKCTTCRGSGVQTRTRQMGPGMVQSPQLVCDSCNGSGETISLKDRCKTCSGAKVVREKKILEVHVEPGMPHGQK  217 (337)
T ss_pred             CCCCC-CCCCCCCCCCceeEEEeccccccccceeEeccCCCccccccccccCcccccchhhhhhheeeccccCCCcccce
Confidence            87654 38999999998542         2457899999999998  578999999999999999999999999999999


Q ss_pred             EEECCCCCCCCCCCCcccEEEEEEEecCCCcccCCCceEEEeecCHHHHhcCCEEEEeCCCCe-EEEEeCCC--CCCCcE
Q 013183          310 IRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGK-VQVKIPKG--VQPGQL  386 (448)
Q Consensus       310 i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~I~l~eAl~G~~~~i~tldG~-~~v~ip~g--~~~g~~  386 (448)
                      |.+.|++++.+ +..+||+++.|..++|+.|.|.|+||++..+|++.||++|+.+.+.|+||+ +.+.++|+  +.||++
T Consensus       218 i~f~geadea~-g~~pgD~vl~i~~k~h~~F~Rrg~dL~~~~~i~l~eal~G~~~~~~~ldGr~l~~~~~pg~vi~~~~~  296 (337)
T KOG0712|consen  218 ITFKGEADEAP-GTKPGDVVLLIDQKEHPGFDRRGSDLYRKLTISLVEALCGFQRVWETLDGRLLKLSSKPGEVISPGDT  296 (337)
T ss_pred             eeeeeeeeecC-CCcCccEEEEecccccccceecccccceeeecchhhccccceEEEEccCCceEEEecCCCceeChhHE
Confidence            99999999875 566999999999999999999999999999999999999999999999998 78888887  899999


Q ss_pred             EEEcCCCCCCCCCCCCCCcEEEEEEEECCC
Q 013183          387 LVLRGKGLAKNGLFLDHGDQYVRFRVNFPT  416 (448)
Q Consensus       387 ~~l~g~G~p~~~~~~~~GDL~V~~~V~~P~  416 (448)
                      ++|+|+|||+.+++  +|||||+|+|+||+
T Consensus       297 ~~v~~~gmp~~~~~--~g~lyi~~~v~fp~  324 (337)
T KOG0712|consen  297 KRVEGEGMPIFRNP--KGDLYIKFEVKFPK  324 (337)
T ss_pred             EeecCCCcccccCC--CCcEEEEEEEEcCC
Confidence            99999999998765  89999999999999

>PRK14299 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=7e-56  Score=437.30  Aligned_cols=271  Identities=37%  Similarity=0.635  Sum_probs=212.7

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhcccCCCCCccccC-
Q 013183           81 KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSA-  159 (448)
Q Consensus        81 ~~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~g~~~~~~~~-  159 (448)
                      ..|||+||||+++||.+|||+|||+||++||||+|+ ++.++++|++|++||++|+||.+|+.||+++.++......+. 
T Consensus         3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~~~~~~~~~~~   81 (291)
T PRK14299          3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNK-SPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTTAASAGWQGPP   81 (291)
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-ChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCccccccccCCC
Confidence            469999999999999999999999999999999997 578899999999999999999999999999876432110000 


Q ss_pred             ---CCCCCccccCCCCCceecccccccc-----cccchhccccccccccCCCCcEEEeeeehhhhcccccceeeeceeee
Q 013183          160 ---GDAEGFRYAGDAEGFRYAYQTHFSD-----SFHKIFSEIFEDETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVP  231 (448)
Q Consensus       160 ---~~~~~~~~~~~~~~f~~~~~~~f~~-----~f~~~Fs~~f~~~~~~~g~di~~~l~isl~e~~~G~~~~i~~~~~~~  231 (448)
                         ....+|. ......|+++|.+.|++     ++.++|.. ++ ....++.|+++++.|||+|+|.|+++.+.+.    
T Consensus        82 ~~~~~~~~~~-~~~~~~~~d~f~~~fgg~~~~~~~g~~~~~-~~-~~~~~g~dl~~~l~isL~ea~~G~~~~i~l~----  154 (291)
T PRK14299         82 PGPPGGGDFS-GFNVGDFSDFFQQLFGGRGGFGGFGDLFGS-VG-RRARKGRDLEAELPLTLEEAYRGGEKVVEVA----  154 (291)
T ss_pred             CCCCCCCCcc-ccCcCCHHHHHHHHhCCCCCCCCccccccc-cc-CCCCCCCCEEEEEEecHHHHhCCCeEEEeeC----
Confidence               0001110 00001233333332221     00001100 00 1134688999999999999999999887541    


Q ss_pred             CCCCCCCCccCCCccccCCCccceeEEEeCCccccCCCcCCceEEeeecceeecCCcEEeceEEEEEEecCCCCCCCEEE
Q 013183          232 CDSCHGRGFPADAKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDTIR  311 (448)
Q Consensus       232 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~C~~C~g~G~~~~~~~l~V~IppG~~~G~~i~  311 (448)
                                                                                   .++++|.||||+++|++|+
T Consensus       155 -------------------------------------------------------------g~~~~V~Ip~G~~~G~~ir  173 (291)
T PRK14299        155 -------------------------------------------------------------GERLSVRIPPGVREGQVIR  173 (291)
T ss_pred             -------------------------------------------------------------CEEEEEecCCCcCCCcEEE
Confidence                                                                         1468999999999999999


Q ss_pred             ECCCCCCCCCCCCcccEEEEEEEecCCCcccCCCceEEEeecCHHHHhcCCEEEEeCCCCeEEEEeCCCCCCCcEEEEcC
Q 013183          312 VPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGKVQVKIPKGVQPGQLLVLRG  391 (448)
Q Consensus       312 ~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~I~l~eAl~G~~~~i~tldG~~~v~ip~g~~~g~~~~l~g  391 (448)
                      |+|+|++.      |||+|+|++++|+.|+|+|+||+++++|++.+|++|+++.|+|+||.++|+||+++++|++++|+|
T Consensus       174 ~~g~G~~~------GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~v~tldG~~~v~ip~~~~~g~~~rl~g  247 (291)
T PRK14299        174 LAGKGRQG------GDLYLVVRLLPHPVFRLEGDDLYATVDVPAPIAVVGGKVRVMTLDGPVEVTIPPRTQAGRKLRLKG  247 (291)
T ss_pred             ECCCCCCC------CCEEEEEEEcCCCCeEEECCEEEEEEecCHHHHhCCCEEEEECCCCCEEEEeCCCcCCCCEEEECC
Confidence            99999863      899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCcEEEEEEEECCC-----hHHHHHHcCChh
Q 013183          392 KGLAKNGLFLDHGDQYVRFRVNFPT-----WQRIVERVRAPK  428 (448)
Q Consensus       392 ~G~p~~~~~~~~GDL~V~~~V~~P~-----~~~l~~~~~~~~  428 (448)
                      +|||..+  +.+|||||+|+|.+|+     .+++++++.+..
T Consensus       248 ~G~p~~~--~~~GDL~v~~~V~~P~~l~~~~~~~l~~l~~~~  287 (291)
T PRK14299        248 KGWPRGP--AGRGDQYAEVRITIPTRPTPEEERLYKQLAELY  287 (291)
T ss_pred             CCCCCCC--CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence            9999643  3579999999999998     455555554443

>PRK10266 curved DNA-binding protein CbpA; Provisional

Probab=100.00  E-value=6.4e-54  Score=426.43  Aligned_cols=268  Identities=32%  Similarity=0.599  Sum_probs=215.4

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhcccCCCCCccccCC
Q 013183           81 KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSAG  160 (448)
Q Consensus        81 ~~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~g~~~~~~~~~  160 (448)
                      ..|||++|||+++|+.+|||+|||+||++||||+++ ++.++++|++|++||++|+||.+|+.||.++..+.... ++..
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~-~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~~~~~~~-~~~~   80 (306)
T PRK10266          3 LKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSK-EPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQHRNDPQ-FNRQ   80 (306)
T ss_pred             cCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-CccHHHHHHHHHHHHHHhhhHHHHHHHHHhhccccCcc-cccc
Confidence            369999999999999999999999999999999987 46789999999999999999999999999864321100 0000


Q ss_pred             CCCCccccCCCCCceecccccccccccchhcccccc-------ccccCCCCcEEEeeeehhhhcccccceeeeceeeeCC
Q 013183          161 DAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFED-------ETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCD  233 (448)
Q Consensus       161 ~~~~~~~~~~~~~f~~~~~~~f~~~f~~~Fs~~f~~-------~~~~~g~di~~~l~isl~e~~~G~~~~i~~~~~~~C~  233 (448)
                      .  .+  . .+..|.      + ..|.++|+.+|++       ....++.|+.+++.|+|+|+|.|+.+++.+.+.+   
T Consensus        81 ~--~~--~-~~~~~~------~-~~~~~~f~~~~g~~~~~~~~~~~~kg~di~~~v~isLee~~~G~~k~i~~~~~~---  145 (306)
T PRK10266         81 F--QH--G-DGQSFN------A-EDFDDIFSSIFGQHARQSRQRPAARGHDIEIEVAVFLEETLTEHKRTISYNLPV---  145 (306)
T ss_pred             c--cc--C-CCCCCC------C-CCHHHHHHHHhCCCCCCCCCCCCCCCCceEEEEEEEHHHhcCCceEEEEEeccc---
Confidence            0  00  0 000000      0 1133444444442       1234678999999999999999999999886532   


Q ss_pred             CCCCCCccCCCccccCCCccceeEEEeCCccccCCCcCCceEEeeecceeecCCcEEeceEEEEEEecCCCCCCCEEEEC
Q 013183          234 SCHGRGFPADAKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDTIRVP  313 (448)
Q Consensus       234 ~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~C~~C~g~G~~~~~~~l~V~IppG~~~G~~i~~~  313 (448)
                       |.|                 .|.+.                              ....++++|.||||+++|++|+++
T Consensus       146 -~~g-----------------~G~~~------------------------------~~~~~~~~V~Ip~G~~~G~~i~~~  177 (306)
T PRK10266        146 -YNA-----------------FGMIE------------------------------QEIPKTLNVKIPAGVGNGQRIRLK  177 (306)
T ss_pred             -ccC-----------------CCeEE------------------------------EeeeEEEEEEECCCCcCCcEEEEe
Confidence             211                 22110                              012358999999999999999999


Q ss_pred             CCCCCCCCCCCcccEEEEEEEecCCCcccCCCceEEEeecCHHHHhcCCEEEEeCCCCeEEEEeCCCCCCCcEEEEcCCC
Q 013183          314 EAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGKVQVKIPKGVQPGQLLVLRGKG  393 (448)
Q Consensus       314 g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~I~l~eAl~G~~~~i~tldG~~~v~ip~g~~~g~~~~l~g~G  393 (448)
                      |+|++...+..+|||+|+|+++||+.|+|+|+||+++++|++.+|++|+++.|+|++|++.|+||+++++|++++|+|+|
T Consensus       178 g~G~~~~~~~~~GDl~v~i~v~ph~~f~r~g~DL~~~~~Isl~~al~G~~~~i~~~~g~v~v~ip~g~~~g~~~ri~g~G  257 (306)
T PRK10266        178 GQGTPGENGGPNGDLWLVIHIAPHPLFDIVGQDLEIVVPLAPWEAALGAKVTVPTLKESILLTIPPGSQAGQRLRVKGKG  257 (306)
T ss_pred             cCCcCCCCCCCCccEEEEEEEcCCCCeEEeCCceEEEEecCHHHHhCCCEEEeeCCCccEEEEeCCCcCCCCEEEECCCC
Confidence            99999776778999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCcEEEEEEEECCC
Q 013183          394 LAKNGLFLDHGDQYVRFRVNFPT  416 (448)
Q Consensus       394 ~p~~~~~~~~GDL~V~~~V~~P~  416 (448)
                      ||..+   .+|||||+|+|.+|+
T Consensus       258 ~p~~~---~~GdL~v~~~v~~P~  277 (306)
T PRK10266        258 LVSKK---QTGDLYAVLKIVMPP  277 (306)
T ss_pred             CCCCC---CCCCEEEEEEEECCC
Confidence            99754   369999999999997

>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.9e-42  Score=334.77  Aligned_cols=309  Identities=30%  Similarity=0.415  Sum_probs=236.4

Q ss_pred             CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhcccCCCCCcccc
Q 013183           79 SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSENEKYS  158 (448)
Q Consensus        79 ~~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~g~~~~~~~  158 (448)
                      ...+|||+||||+++|+.+|||+|||+||++||||||+++|.|.++|++|+.||||||||.+|+.||++|++|.+...  
T Consensus        13 ~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~~~~--   90 (336)
T KOG0713|consen   13 LAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLKDEN--   90 (336)
T ss_pred             hcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhcccc--
Confidence            345799999999999999999999999999999999999999999999999999999999999999999988776421  


Q ss_pred             CCCCCCccccCCCCCceecccccccccccchhccccccccccCCCCcEEEeeeehhhhcccccceeeeceeeeCCCCCCC
Q 013183          159 AGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFEDETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGR  238 (448)
Q Consensus       159 ~~~~~~~~~~~~~~~f~~~~~~~f~~~f~~~Fs~~f~~~~~~~g~di~~~l~isl~e~~~G~~~~i~~~~~~~C~~C~G~  238 (448)
                       ...++-  .++.++|+.+|+..     .--|+.....+...+|.++...++.+++++|.|...+....+.+.|. |.|+
T Consensus        91 -~~~~~g--~~~~~~f~~~f~df-----g~~~~g~~~~e~~~~g~~V~~~~e~~~~h~y~~~~~e~~r~~~v~~~-~~g~  161 (336)
T KOG0713|consen   91 -KDGEGG--GGGNDIFSAFFGDF-----GVTVGGNPLEEALPKGSDVSSDLEKQLEHFYMGNFVEEVREKGVYKP-APGT  161 (336)
T ss_pred             -cccccC--CcccchHHHhhccc-----ccccCCCcccCCCCCCceEEeehhhchhhhhcccHHHHHhccCceee-cCcc
Confidence             001100  00124555544321     11112222223467789999999999999999987766655544432 1221


Q ss_pred             CccCCCccccCCCccceeEEEeCCccccCCCcCCceEEe-eecceeecCCcEEeceEEEEEEecCCCCCCCEEEECCCCC
Q 013183          239 GFPADAKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRII-KDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDTIRVPEAGN  317 (448)
Q Consensus       239 G~~~~~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~-~~~C~~C~g~G~~~~~~~l~V~IppG~~~G~~i~~~g~G~  317 (448)
                      -      .-.|.     -      ....+..|.|....+ ...|.+|.+.+...+..+.++.+..|+..|....+..+|.
T Consensus       162 ~------~~~~~-----~------~~~~~~~~~g~~~~~q~~~~~~~~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~  224 (336)
T KOG0713|consen  162 R------KCNCR-----L------EMFTQQEGPGRFQMLQEAVCDECPNVKLVLEEDPLEVEFERGDADGPEEIFELEGE  224 (336)
T ss_pred             c------ccCCh-----h------hheeeccCCChhhhhhhhhhccCCccceeecCCceeeeeeecccCCceeeeeccCC
Confidence            1      00110     0      111223333333332 4567777777888889999999999999999999999998


Q ss_pred             CCCCCCCcccEEEEEEEecCCCcccCCCceEEEeecCHHHHhcCCEEEEeCCCCe-EEEEeCCCCCCCcEEEEcCCCCCC
Q 013183          318 AGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGK-VQVKIPKGVQPGQLLVLRGKGLAK  396 (448)
Q Consensus       318 ~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~I~l~eAl~G~~~~i~tldG~-~~v~ip~g~~~g~~~~l~g~G~p~  396 (448)
                      +.. -+.+||+++.+..-+|+.|.|+++|+++++.+++.+++.|+..++.++|+. +.+..-.+..|+..++.+++|||.
T Consensus       225 ~h~-~~~~gD~~f~~~~y~~~~~~~k~~~~~~n~~~sl~~~~v~~~~e~~~~d~~~~~~~r~~~~~p~~~~~~~~~~~~~  303 (336)
T KOG0713|consen  225 PHI-DGVPGDLFFKIVSYTHPRFERKGDDLYTNVTISLEAALVGFEMEILHLDGHYVEVSRKKITWPGARTRKKGEGMPL  303 (336)
T ss_pred             cce-ecccCCceeeeEEecccceecCccchhhHHHHHHHHHHHHHHHHhhccchhhhhhhhhhccccchhhhhhhccchh
Confidence            754 457999999999999999999999999999999999999999999999997 566666778899999999999996


Q ss_pred             CCCCCCCCcEEEEEEEECCC
Q 013183          397 NGLFLDHGDQYVRFRVNFPT  416 (448)
Q Consensus       397 ~~~~~~~GDL~V~~~V~~P~  416 (448)
                      -......|+++++|.+.+|.
T Consensus       304 l~~~~~~~~~~~t~~~~~~~  323 (336)
T KOG0713|consen  304 LKNRNEKGNLYVTFDVEFPK  323 (336)
T ss_pred             hhccchhcceeEEecccCcc
Confidence            64444679999999999996

>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ

Probab=100.00  E-value=8.2e-40  Score=343.21  Aligned_cols=121  Identities=20%  Similarity=0.284  Sum_probs=111.6

Q ss_pred             EeceEEEEEEecCCCCCCCEEEECCCCCCCCCCCCcccEEEEEEEecCCCcccCCCceEEEeecCHHHHhcCCEEEEeCC
Q 013183          290 VDGVKEVKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTL  369 (448)
Q Consensus       290 ~~~~~~l~V~IppG~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~I~l~eAl~G~~~~i~tl  369 (448)
                      +.+.++++|.||||+++|++|+|+|+|+.++. + +|||||+|+++||+.|+|+|+||++++.|+|.+||+|+++.|+||
T Consensus       693 vkE~ktLeVkIPpGVkdGqkIRf~GeGDegpg-g-~GDLyVvIkVKPHp~FrRdGdDL~~~v~ISL~EALLGgtIeIpTL  770 (871)
T TIGR03835       693 TNEAITLEIQLPITSQLNISAIFKGFGHDFGN-G-CGDLKVVFKVIPSNFFQIKNDGLHVAALVDPLVAYNGGIIDVFGP  770 (871)
T ss_pred             eeeeEEEEEecCCCCCCCCEEEeccccCCCCC-C-CCCEEEEEEEcCCCCeEEECCeEEEEEecCHHHHhcCCEEEeeCC
Confidence            45678999999999999999999999998643 3 499999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEeCCCCCCCcEEEEcCCCCCCCCCCCCCCcEEEEEEEEC
Q 013183          370 SGKVQVKIPKGVQPGQLLVLRGKGLAKNGLFLDHGDQYVRFRVNF  414 (448)
Q Consensus       370 dG~~~v~ip~g~~~g~~~~l~g~G~p~~~~~~~~GDL~V~~~V~~  414 (448)
                      ||++.|+||+++++|+++||+|+|||..+  +.+|||||+|+|.-
T Consensus       771 DGrVkLkIPpgTqpGqvLRIkGKGMP~~~--~~RGDLyV~f~V~~  813 (871)
T TIGR03835       771 NKLFNVRIPGGIKVNDQVIFKDLGLTKTK--YDKGSLIVHLYYSS  813 (871)
T ss_pred             CCCEEEeeCCCCCCCcEEEECCCCCCCCC--CCCCCEEEEEEEee
Confidence            99999999999999999999999999643  34799999999974

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.

>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.3e-39  Score=318.99  Aligned_cols=240  Identities=43%  Similarity=0.777  Sum_probs=204.6

Q ss_pred             CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhcccCCCCCccccCCC
Q 013183           82 RDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSAGD  161 (448)
Q Consensus        82 ~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~g~~~~~~~~~~  161 (448)
                      .|||+||||+++|+..|||+||++|||+||||.|.+ ++|.++|++|.+|||||+|+++|.+||.++..+.       .+
T Consensus        43 ~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~-~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~~-------~~  114 (288)
T KOG0715|consen   43 EDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKD-KEASKKFKEISEAYEILSDEEKRQEYDVYGLEQH-------GE  114 (288)
T ss_pred             cchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCC-cchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhcc-------cc
Confidence            399999999999999999999999999999999986 5899999999999999999999999999975430       00


Q ss_pred             CCCccccCCCCCceecccccccccccchhcccccc--ccccCCCCcEEEeeeehhhhcccccceeeeceeeeCCCCCCCC
Q 013183          162 AEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFED--ETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRG  239 (448)
Q Consensus       162 ~~~~~~~~~~~~f~~~~~~~f~~~f~~~Fs~~f~~--~~~~~g~di~~~l~isl~e~~~G~~~~i~~~~~~~C~~C~G~G  239 (448)
                      +.       ++++             ++|...|++  .....+.++++.+.++|+++..|+.+.+.+.....|..|.|.|
T Consensus       115 ~~-------g~~~-------------~~~~~~~~~~~~~~~~~~~~~~d~~~~f~~A~~g~~~~~~~~~~~~~~t~~~~~  174 (288)
T KOG0715|consen  115 FG-------GNPF-------------DVFLEFFGGKMNKRVPDKDQYYDLSLDFKEAVRGSKKRISFNVLSDCETCFGSG  174 (288)
T ss_pred             cc-------CCcc-------------chHHHhhcccccccccCcccccccccCHHHHhhccccceEEEeecccccccCcC
Confidence            00       1111             122222221  1123356888889999999999999999999999999999999


Q ss_pred             ccCCCccccCCCccceeEEEe---CCccc-cCCCcCCceEEeeecceeecCCcEEeceEEEEEEecCCCCCCCEEEECCC
Q 013183          240 FPADAKTKICSTCRGIGRVTI---PPFTS-TCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDTIRVPEA  315 (448)
Q Consensus       240 ~~~~~~~~~C~~C~G~G~~~~---~~~~~-~C~~C~G~G~~~~~~C~~C~g~G~~~~~~~l~V~IppG~~~G~~i~~~g~  315 (448)
                      ...+.....|..|.|+|.+..   .++.. +|..|.|.|.+..+.|..|.|.|.+...+.+.|.+|+|+.++.+|++.+.
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~c~~~~~~~~~~c~~~~g~~~v~~~k~i~i~~~~g~~~~~~l~~~~~  254 (288)
T KOG0715|consen  175 AEEGAKRESCKTCSGRGLVSNPKEDPFILYTCSYCLGRGLVLRDNCQACSGAGQVRRAKDIMIVLPAGVRSADTLRFAGH  254 (288)
T ss_pred             cccccccccchhhhCcccccccccCCcceeecccccccceeccchHHHhhcchhhhhheeEEeecCcccccccEEEEecC
Confidence            999999999999999995432   23322 69999999999999999999999999999999999999999999999998


Q ss_pred             CCCCCCCCCcccEEEEEEEecCCCcccCCCceEEEeecCHHH
Q 013183          316 GNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQ  357 (448)
Q Consensus       316 G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~I~l~e  357 (448)
                      |..        ||+|.+.|.+++.|+|+|.|+++++.|++.+
T Consensus       255 ~~~--------~l~v~~~v~~~~~~~r~~~~i~~~~~i~~~~  288 (288)
T KOG0715|consen  255 GND--------DLFVRLIVAKSPSFRREGKDILYDAIISFTQ  288 (288)
T ss_pred             Ccc--------eEEEEEEeccCcccccccCcccccccccccC
Confidence            754        9999999999999999999999999998753

>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.88  E-value=3.3e-22  Score=196.65  Aligned_cols=264  Identities=29%  Similarity=0.475  Sum_probs=179.0

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hhHHHHHHHHHHHHHHhhhhhhhhhhhhcccCCCCCccccC
Q 013183           81 KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNN-PSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSA  159 (448)
Q Consensus        81 ~~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~g~~~~~~~~  159 (448)
                      ..|||++|+|.++|+.+||++||+++|++||||+++.. ..++++|++|++||++|+||.+|..||.+++.+..+.....
T Consensus         2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~~~~~~~~~~~   81 (306)
T KOG0714|consen    2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGEEGLKGGGSFS   81 (306)
T ss_pred             cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCccccccCCCCC
Confidence            46999999999999999999999999999999998765 24556899999999999999999999999875544311000


Q ss_pred             CC-CCC---ccccCCCCCceeccccc--cccc----------c-cch-------hcccccc-----------ccccCCCC
Q 013183          160 GD-AEG---FRYAGDAEGFRYAYQTH--FSDS----------F-HKI-------FSEIFED-----------ETSHFAPD  204 (448)
Q Consensus       160 ~~-~~~---~~~~~~~~~f~~~~~~~--f~~~----------f-~~~-------Fs~~f~~-----------~~~~~g~d  204 (448)
                      .. ..+   +......+.|.++|+..  ++..          + ...       +....+.           ....+...
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (306)
T KOG0714|consen   82 SSFTSELFYFLFRKPDKDFYEFFGVSSPFSGSKKGYRDKNAAPGEEAFKSEGKAFQSLYGPKRKQYDSSGSDRSARQSPP  161 (306)
T ss_pred             CCCCCCcceeccCchhhhHHHHhCCCCCCccccccCCccccccCccccccccccccccCCCcccccccccccccccCCCC
Confidence            00 010   11111122333444311  0000          0 000       0001110           00111122


Q ss_pred             cEEEeeeehhhhcccccceeeeceeeeCCCCCCCCccCCCccccCCCccceeEEEeCCccccCCCcCCceEEeeecceee
Q 013183          205 IQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDHCMTC  284 (448)
Q Consensus       205 i~~~l~isl~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~C~~C  284 (448)
                      +...+.+++++.+.|+.+...+.+...                                               ..... 
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------------------~~~~~-  193 (306)
T KOG0714|consen  162 VEHPLRVSLEDLYKGESKKMKISRQSF-----------------------------------------------TSNGR-  193 (306)
T ss_pred             ccCCcceeHHHhccccceeeecccccc-----------------------------------------------cCCcc-
Confidence            333344466666666655555433211                                               00000 


Q ss_pred             cCCcEEeceEEEEEEecCCCCCCCEEEECCCCCCCCCCCCcccEEEEEEEecCCCcccCCCceEEE--eecCHHHHhcCC
Q 013183          285 KGSGVVDGVKEVKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVD--SNISFTQAILGG  362 (448)
Q Consensus       285 ~g~G~~~~~~~l~V~IppG~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~--~~I~l~eAl~G~  362 (448)
                         ........+.+.+.++++.|+.+....+|+... +..|-++++.+..++|+.|.+.++||...  ..|++.+|++|.
T Consensus       194 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~f~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~~~~~  269 (306)
T KOG0714|consen  194 ---EGSSRSRYLSISIKPGWKEGTKITFPEEGDEEP-GILPADIEFVVDEKPHPLFSRDGNDLSYSSGYEISLKEALLGV  269 (306)
T ss_pred             ---cccCccceeEEeccCCcccccceeccccccccC-CcCcceeEEEEecCCcccccCCCccceecccceeehhhhhcCc
Confidence               012345678999999999999999999998764 36788999999999999999999999999  999999999999


Q ss_pred             EEEEeCCCCe-EEEEeC-CCCCCCcEEEEcCCCCCC
Q 013183          363 KVDVPTLSGK-VQVKIP-KGVQPGQLLVLRGKGLAK  396 (448)
Q Consensus       363 ~~~i~tldG~-~~v~ip-~g~~~g~~~~l~g~G~p~  396 (448)
                      ...++++++. ..+.+. ..+.++....++++|+|.
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (306)
T KOG0714|consen  270 TVFVPTLDGRSYSLSINKDLIEPGEEDVIPGEGLPC  305 (306)
T ss_pred             ceeeecccCccccCcccccccCCCceeeecCCCCCC
Confidence            9999999987 444444 567899999999999985

>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.78  E-value=1.3e-19  Score=170.92  Aligned_cols=72  Identities=49%  Similarity=0.808  Sum_probs=68.9

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhcccCCC
Q 013183           81 KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGS  152 (448)
Q Consensus        81 ~~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~g~  152 (448)
                      ..|+|+|||++++|+.++||||||+||++||||+++++|++.++|++||+||+||+||.+|..||.+|+.+.
T Consensus        30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l  101 (279)
T KOG0716|consen   30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGELGL  101 (279)
T ss_pred             hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHH
Confidence            579999999999999999999999999999999999999999999999999999999999999999977654

>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=99.75  E-value=1.8e-17  Score=155.80  Aligned_cols=68  Identities=56%  Similarity=0.903  Sum_probs=64.7

Q ss_pred             CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChh-HHHHHHHHHHHHHHhhhhhhhhhhhhc
Q 013183           80 SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPS-AKRKFQEIRDAYETLRDSEKRAQYDRR  147 (448)
Q Consensus        80 ~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~-a~~~f~~i~~Ay~vL~d~~~R~~Yd~~  147 (448)
                      ...+||+||||+++|+..||++|||++|++||||+++.++. ++++|+.|++||++|+|+.+|..||..
T Consensus         4 ~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~   72 (237)
T COG2214           4 DLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKI   72 (237)
T ss_pred             hhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhh
Confidence            45699999999999999999999999999999999998885 999999999999999999999999996

>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress

Probab=99.74  E-value=4.7e-18  Score=136.24  Aligned_cols=71  Identities=45%  Similarity=0.823  Sum_probs=61.0

Q ss_pred             ceEEEeecCHHHHhcCCEEEEeCCCC-eEEEEeCCCCCCCcEEEEcCCCCCCCCCCCCCCcEEEEEEEECCC
Q 013183          346 DVYVDSNISFTQAILGGKVDVPTLSG-KVQVKIPKGVQPGQLLVLRGKGLAKNGLFLDHGDQYVRFRVNFPT  416 (448)
Q Consensus       346 DL~~~~~I~l~eAl~G~~~~i~tldG-~~~v~ip~g~~~g~~~~l~g~G~p~~~~~~~~GDL~V~~~V~~P~  416 (448)
                      ||+++++|+++||++|++++|+|+|| .+.|+||+++++|++++|+|+|||.....+.+|||||+|+|.||+
T Consensus         1 DL~~~~~I~l~~al~G~~i~i~~l~g~~~~i~ip~~~~~g~~~~i~g~G~p~~~~~~~~GdL~v~~~V~~P~   72 (81)
T PF01556_consen    1 DLYCTIPISLKEALLGGTISIPTLDGKTIKIKIPPGTQPGQQLRIKGKGMPKPKGGGKRGDLIVKFEVEFPK   72 (81)
T ss_dssp             EEEEEEEEEHHHHHH-EEEEEE-TTS-EEEEEETST-STT-EEEETTESEEESSSTTSBEEEEEEEEEE--S
T ss_pred             CeEEEEEeCHHHHhCCCEEEEECCCCCEEEEeccCccCCCcEEeecCCCCCcCCCCCCcCCEEEEEEEECCC
Confidence            89999999999999999999999999 689999999999999999999999875545689999999999998

The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....

>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.73  E-value=2.8e-18  Score=167.36  Aligned_cols=73  Identities=52%  Similarity=0.847  Sum_probs=69.4

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhcccCCCC
Q 013183           81 KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSE  153 (448)
Q Consensus        81 ~~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~g~~  153 (448)
                      ..|||++|||+.+|+.+||++|||+.|++||||||++||.|.++|+.+.+||+||+|+.+|+.||.++..+..
T Consensus         4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~~   76 (296)
T KOG0691|consen    4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGSS   76 (296)
T ss_pred             cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccc
Confidence            5699999999999999999999999999999999999999999999999999999999999999999766543

>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []

Probab=99.73  E-value=6e-18  Score=129.30  Aligned_cols=63  Identities=54%  Similarity=0.979  Sum_probs=59.8

Q ss_pred             CcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh-hHHHHHHHHHHHHHHhhhhhhhhhhh
Q 013183           83 DPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNP-SAKRKFQEIRDAYETLRDSEKRAQYD  145 (448)
Q Consensus        83 ~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~-~a~~~f~~i~~Ay~vL~d~~~R~~Yd  145 (448)
                      |||+||||+++++.++||++|+++++++|||+++++. .+++.|+.|++||++|+||.+|+.||
T Consensus         1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD   64 (64)
T PF00226_consen    1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD   64 (64)
T ss_dssp             HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred             ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence            5899999999999999999999999999999988765 58899999999999999999999998

Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....

>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.71  E-value=6.3e-18  Score=169.18  Aligned_cols=75  Identities=40%  Similarity=0.721  Sum_probs=68.5

Q ss_pred             CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC---hhHHHHHHHHHHHHHHhhhhhhhhhhhhcccCCCCC
Q 013183           80 SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNN---PSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSEN  154 (448)
Q Consensus        80 ~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~---~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~g~~~  154 (448)
                      ...+||.+|+|+++||.+|||+|||++++.|||||..+.   ..|++.|+.|.+|||||+||.+|++||.+|++|...
T Consensus         7 ~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~t   84 (546)
T KOG0718|consen    7 DEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLKT   84 (546)
T ss_pred             chhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhccccc
Confidence            345999999999999999999999999999999998742   248999999999999999999999999999998863

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.71  E-value=5e-18  Score=169.94  Aligned_cols=73  Identities=48%  Similarity=0.709  Sum_probs=67.0

Q ss_pred             CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hhHHHHHHHHHHHHHHhhhhhhhhhhhhcccCC
Q 013183           79 SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNN-PSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRG  151 (448)
Q Consensus        79 ~~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~g  151 (448)
                      .+.+.||++|||.++|++.|||++||+||++||||+|+.. .+|.++|+.|+.||+|||||..|++||.+.++.
T Consensus         5 ~~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreqi   78 (508)
T KOG0717|consen    5 FKKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQI   78 (508)
T ss_pred             hhhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHHH
Confidence            4567999999999999999999999999999999998765 468999999999999999999999999987743

>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional

Probab=99.68  E-value=3.8e-17  Score=176.71  Aligned_cols=74  Identities=31%  Similarity=0.508  Sum_probs=68.2

Q ss_pred             CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhcccCCCC
Q 013183           79 SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSE  153 (448)
Q Consensus        79 ~~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~g~~  153 (448)
                      ....+||++|||+++||..|||+|||+||++||||+++++ .|.++|++|++||+||+||.+|+.||++|..|..
T Consensus       570 ~~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~-~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl~  643 (1136)
T PTZ00341        570 IPDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGN-EGFHKFKKINEAYQILGDIDKKKMYNKFGYDGIK  643 (1136)
T ss_pred             CCCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHhCCHHHHHHHhhccccccC
Confidence            4467999999999999999999999999999999999864 6888999999999999999999999999877654

>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.64  E-value=1.6e-16  Score=146.50  Aligned_cols=69  Identities=48%  Similarity=0.798  Sum_probs=63.6

Q ss_pred             CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC--CChhHHHHHHHHHHHHHHhhhhhhhhhhhhcc
Q 013183           80 SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANK--NNPSAKRKFQEIRDAYETLRDSEKRAQYDRRR  148 (448)
Q Consensus        80 ~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~--~~~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~  148 (448)
                      ..+|+|+||||.++|+..+|++||++||++||||+++  ...++.++|++++.||.||+|.++|+.||..|
T Consensus        12 ~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG   82 (264)
T KOG0719|consen   12 NKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETG   82 (264)
T ss_pred             cccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccC
Confidence            3459999999999999999999999999999999994  33568999999999999999999999999985

>smart00271 DnaJ DnaJ molecular chaperone homology domain

Probab=99.63  E-value=4.5e-16  Score=117.15  Aligned_cols=59  Identities=58%  Similarity=0.901  Sum_probs=54.6

Q ss_pred             CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-ChhHHHHHHHHHHHHHHhhhhhh
Q 013183           82 RDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKN-NPSAKRKFQEIRDAYETLRDSEK  140 (448)
Q Consensus        82 ~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~-~~~a~~~f~~i~~Ay~vL~d~~~  140 (448)
                      +|||++|||+++++.++||+||+++++++|||++++ .+.+.+.|++|++||++|+||.+
T Consensus         1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~~   60 (60)
T smart00271        1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK   60 (60)
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCCC
Confidence            389999999999999999999999999999999986 56788999999999999999853

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.61  E-value=3.4e-15  Score=149.22  Aligned_cols=134  Identities=28%  Similarity=0.567  Sum_probs=100.5

Q ss_pred             EEeeeehhhhcccccceeee--ceeeeCCCCCCCCccCCC-------ccccCCCccceeEEEeCCccccCCCcCCceEEe
Q 013183          207 VELVLSFAEAAKGCTKHVSF--DAFVPCDSCHGRGFPADA-------KTKICSTCRGIGRVTIPPFTSTCSTCKGLGRII  277 (448)
Q Consensus       207 ~~l~isl~e~~~G~~~~i~~--~~~~~C~~C~G~G~~~~~-------~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~  277 (448)
                      .++.++-...+.-|.-.-.-  +..+.|++|+|+|.....       ...+|+.|+|+|.+    +..+|..|+|.|++.
T Consensus       135 ~~i~~~~~~~C~~C~GsGak~gt~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~----i~~pC~~C~G~G~v~  210 (371)
T COG0484         135 KEIRVTRSVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKI----IKDPCGKCKGKGRVK  210 (371)
T ss_pred             eeEecceeeECCcCCCCCCCCCCCCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeE----CCCCCCCCCCCCeEe
Confidence            44555555545444333211  256889999999975332       26799999999998    578999999999987


Q ss_pred             eecceeecCC-cEEeceE--------------------------------------------------------------
Q 013183          278 KDHCMTCKGS-GVVDGVK--------------------------------------------------------------  294 (448)
Q Consensus       278 ~~~C~~C~g~-G~~~~~~--------------------------------------------------------------  294 (448)
                      +..-.+++.+ |+.++.+                                                              
T Consensus       211 ~~~~i~V~IPaGv~~g~~ir~~g~G~~g~~Ggp~GDLyv~i~v~~h~~F~R~g~dL~~~~~Is~~~AalG~~i~vptl~g  290 (371)
T COG0484         211 KKKSISVNIPAGVDDGDRIRLSGEGEAGPNGGPAGDLYVFVHVKPHPIFERDGDDLYCEVPISFTEAALGGEIEVPTLDG  290 (371)
T ss_pred             eeeEEEEECCCCCccCCEEEEecCcccCCCCCCCccEEEEEEeecCCCeEECCCceEeccccCHHHHhcCCEEEEEecCC
Confidence            7666666654 4444433                                                              


Q ss_pred             EEEEEecCCCCCCCEEEECCCCCCCCCCCCcccEEEEEEEecCCCcccCC
Q 013183          295 EVKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDG  344 (448)
Q Consensus       295 ~l~V~IppG~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G  344 (448)
                      .++|.||||++.|++++|+|+|.+...+...|||||+|+|.-...+....
T Consensus       291 ~~~l~ip~Gtq~G~~~rl~gkG~p~~~~~~~GDl~v~v~v~~P~~ls~~q  340 (371)
T COG0484         291 RVKLKIPAGTQTGEVFRLRGKGMPKLRSGGRGDLYVRVKVETPKNLSDEQ  340 (371)
T ss_pred             CEEEecCCCCccCcEEEEcCCCccccCCCCcCCEEEEEEEEcCCCCCHHH
Confidence            67899999999999999999999987777789999999999766654433

>PHA03102 Small T antigen; Reviewed

Probab=99.60  E-value=8.3e-16  Score=136.41  Aligned_cols=66  Identities=24%  Similarity=0.466  Sum_probs=60.8

Q ss_pred             CCcccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhcccCC
Q 013183           82 RDPYELLGVPENA--SQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRG  151 (448)
Q Consensus        82 ~~~y~iLgv~~~a--~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~g  151 (448)
                      ..+|++|||+++|  |.+|||+|||++|+++|||++++    +++|++|++||++|+|+.+|..||.++...
T Consensus         5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~----~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~   72 (153)
T PHA03102          5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGD----EEKMKELNTLYKKFRESVKSLRDLDGEEDS   72 (153)
T ss_pred             HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCch----hHHHHHHHHHHHHHhhHHHhccccccCCcc
Confidence            4789999999999  99999999999999999999764    579999999999999999999999997543

>cd06257 DnaJ DnaJ domain or J-domain

Probab=99.60  E-value=1.7e-15  Score=111.83  Aligned_cols=55  Identities=56%  Similarity=0.985  Sum_probs=51.8

Q ss_pred             CcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhh
Q 013183           83 DPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRD  137 (448)
Q Consensus        83 ~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d  137 (448)
                      |||++|||+++++.++||++|++|++++|||++++.+.+.+.|++|++||++|+|
T Consensus         1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d   55 (55)
T cd06257           1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD   55 (55)
T ss_pred             ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence            6899999999999999999999999999999997656788999999999999986

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.58  E-value=2.6e-15  Score=146.08  Aligned_cols=69  Identities=48%  Similarity=0.747  Sum_probs=63.7

Q ss_pred             CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh---hHHHHHHHHHHHHHHhhhhhhhhhhhhc
Q 013183           79 SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNP---SAKRKFQEIRDAYETLRDSEKRAQYDRR  147 (448)
Q Consensus        79 ~~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~---~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~  147 (448)
                      +..+|||+||||.++|+..||.||||++|.+||||...+..   .|+++|-.|..|-|||+||++|+.+|..
T Consensus       391 s~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnG  462 (504)
T KOG0624|consen  391 SGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNG  462 (504)
T ss_pred             hccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCC
Confidence            45689999999999999999999999999999999987644   3889999999999999999999999984

>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.57  E-value=3.5e-15  Score=136.73  Aligned_cols=71  Identities=37%  Similarity=0.665  Sum_probs=65.4

Q ss_pred             CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhccc
Q 013183           79 SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRS  149 (448)
Q Consensus        79 ~~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~  149 (448)
                      ....|||+||||+++|+..|||+|||+|.++|||||++...+.++.|..|++||+.|+|+..|..|..||.
T Consensus        96 ~~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~  166 (230)
T KOG0721|consen   96 RQKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGN  166 (230)
T ss_pred             hhcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCC
Confidence            45679999999999999999999999999999999998655678889999999999999999999999964

>PRK05014 hscB co-chaperone HscB; Provisional

Probab=99.47  E-value=6.5e-14  Score=127.73  Aligned_cols=66  Identities=32%  Similarity=0.539  Sum_probs=58.8

Q ss_pred             CCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCChh-----HHHHHHHHHHHHHHhhhhhhhhhhhhc
Q 013183           82 RDPYELLGVPEN--ASQDEIKKAFHMLAKQYHPDANKNNPS-----AKRKFQEIRDAYETLRDSEKRAQYDRR  147 (448)
Q Consensus        82 ~~~y~iLgv~~~--a~~~eIk~ayr~la~~~HPD~~~~~~~-----a~~~f~~i~~Ay~vL~d~~~R~~Yd~~  147 (448)
                      .|||++|||++.  ++..+|+++||+|++++|||+..+.+.     +.+.|+.||+||++|+||.+|+.|+..
T Consensus         1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~   73 (171)
T PRK05014          1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLS   73 (171)
T ss_pred             CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHH
Confidence            389999999995  788999999999999999999865433     567899999999999999999999874

>PRK01356 hscB co-chaperone HscB; Provisional

Probab=99.45  E-value=1.1e-13  Score=125.63  Aligned_cols=67  Identities=30%  Similarity=0.510  Sum_probs=58.4

Q ss_pred             CCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCChh---HHHHHHHHHHHHHHhhhhhhhhhhhhcc
Q 013183           82 RDPYELLGVPEN--ASQDEIKKAFHMLAKQYHPDANKNNPS---AKRKFQEIRDAYETLRDSEKRAQYDRRR  148 (448)
Q Consensus        82 ~~~y~iLgv~~~--a~~~eIk~ayr~la~~~HPD~~~~~~~---a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~  148 (448)
                      .|||++|||++.  ++..+|+++||+|++++|||++.+..+   +.+.+..||+||++|+||.+|+.|+...
T Consensus         2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l   73 (166)
T PRK01356          2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLLL   73 (166)
T ss_pred             CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHc
Confidence            489999999996  789999999999999999999864322   3346789999999999999999998864

>PRK03578 hscB co-chaperone HscB; Provisional

Probab=99.44  E-value=1.5e-13  Score=125.64  Aligned_cols=67  Identities=31%  Similarity=0.513  Sum_probs=58.8

Q ss_pred             CCCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCChhHHH-----HHHHHHHHHHHhhhhhhhhhhhhc
Q 013183           81 KRDPYELLGVPEN--ASQDEIKKAFHMLAKQYHPDANKNNPSAKR-----KFQEIRDAYETLRDSEKRAQYDRR  147 (448)
Q Consensus        81 ~~~~y~iLgv~~~--a~~~eIk~ayr~la~~~HPD~~~~~~~a~~-----~f~~i~~Ay~vL~d~~~R~~Yd~~  147 (448)
                      ..|||++|||++.  ++..+|+++||+|++++|||++.+.+.+++     .++.||+||++|+||.+|+.|+..
T Consensus         5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~   78 (176)
T PRK03578          5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLH   78 (176)
T ss_pred             CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHH
Confidence            3699999999995  689999999999999999999876655443     458999999999999999999974

>PRK14282 chaperone protein DnaJ; Provisional

Probab=99.44  E-value=2.7e-13  Score=138.59  Aligned_cols=140  Identities=25%  Similarity=0.468  Sum_probs=98.4

Q ss_pred             EEeeeehhhhcccccceee--eceeeeCCCCCCCCccCC---------CccccCCCccceeEEEeCCccccCCCcCCceE
Q 013183          207 VELVLSFAEAAKGCTKHVS--FDAFVPCDSCHGRGFPAD---------AKTKICSTCRGIGRVTIPPFTSTCSTCKGLGR  275 (448)
Q Consensus       207 ~~l~isl~e~~~G~~~~i~--~~~~~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~  275 (448)
                      .++.++-...+..|.-.-.  -.....|+.|+|+|....         .....|+.|+|.|..    +...|..|+|.|.
T Consensus       145 ~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~----~~~~C~~C~G~g~  220 (369)
T PRK14282        145 IPVEYDRYETCPHCGGTGVEPGSGYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKI----PGEYCHECGGSGR  220 (369)
T ss_pred             EEEEeeecccCCCCCccCCCCCCCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCccee----CCCCCCCCCCcee
Confidence            3444554554543333221  123468999999997532         135689999999987    4578999999997


Q ss_pred             EeeecceeecCC-cEEeceE------------------------------------------------------------
Q 013183          276 IIKDHCMTCKGS-GVVDGVK------------------------------------------------------------  294 (448)
Q Consensus       276 ~~~~~C~~C~g~-G~~~~~~------------------------------------------------------------  294 (448)
                      +.+..-.++..+ |+..+.+                                                            
T Consensus       221 v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~i~i~v~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~l  300 (369)
T PRK14282        221 IRRRVRTTVKIPAGVEDGTVLRITGGGNAGYYGGPYGDLYVIVRVRPDPRFKRSGSDLIYDVTIDYLQAILGTTVEVPLP  300 (369)
T ss_pred             EEEEEEEEEEeCCCCCCCCEEEEecccCCCCCCCCCCCEEEEEEEecCCcEEEecCCEEEEEEeCHHHHhCCCEEEEeCC
Confidence            654322222221 2111111                                                            


Q ss_pred             ---EEEEEecCCCCCCCEEEECCCCCCCCCCCCcccEEEEEEEecCCCcccCCCceEEE
Q 013183          295 ---EVKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVD  350 (448)
Q Consensus       295 ---~l~V~IppG~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~  350 (448)
                         .++|.||||+++|++++|+|+|++...+..+|||||+|+|+.|+.|++++.+|+.+
T Consensus       301 dG~~i~v~Ip~g~~~g~~iri~GkG~p~~~~~~~GDL~V~~~v~~P~~l~~~~~~ll~~  359 (369)
T PRK14282        301 EGGTTMLKIPPGTQPETVFRLKGKGLPNMRYGRRGDLIVNVHVEIPKRLSREERKLLKE  359 (369)
T ss_pred             CCcEEEEEeCCCcCCCCEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence               58999999999999999999999865445689999999999999999999887544

>PRK00294 hscB co-chaperone HscB; Provisional

Probab=99.44  E-value=1.9e-13  Score=124.47  Aligned_cols=69  Identities=23%  Similarity=0.435  Sum_probs=61.0

Q ss_pred             CCCCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCChh-----HHHHHHHHHHHHHHhhhhhhhhhhhhcc
Q 013183           80 SKRDPYELLGVPEN--ASQDEIKKAFHMLAKQYHPDANKNNPS-----AKRKFQEIRDAYETLRDSEKRAQYDRRR  148 (448)
Q Consensus        80 ~~~~~y~iLgv~~~--a~~~eIk~ayr~la~~~HPD~~~~~~~-----a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~  148 (448)
                      ...|||++||+++.  .+..+|+++||+|++++|||++.+.++     +.+.|..||+||++|+||.+|+.|+...
T Consensus         2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l   77 (173)
T PRK00294          2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLAL   77 (173)
T ss_pred             CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHh
Confidence            35699999999996  678999999999999999999876543     5678999999999999999999999753

>PRK14290 chaperone protein DnaJ; Provisional

Probab=99.41  E-value=5.7e-13  Score=136.00  Aligned_cols=119  Identities=24%  Similarity=0.596  Sum_probs=91.6

Q ss_pred             eeeeCCCCCCCCccCCC---------ccccCCCccceeEEEeCCccccCCCcCCceEEeeecceeecCC-cEEeceE---
Q 013183          228 AFVPCDSCHGRGFPADA---------KTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDHCMTCKGS-GVVDGVK---  294 (448)
Q Consensus       228 ~~~~C~~C~G~G~~~~~---------~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~C~~C~g~-G~~~~~~---  294 (448)
                      ....|+.|+|+|.....         ....|+.|+|.|..    ....|..|+|.|.+.+..-.+...+ |+..+.+   
T Consensus       164 ~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~----~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~  239 (365)
T PRK14290        164 KLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRI----PEEKCPRCNGTGTVVVNEDISVKIPKGATDNLRLRV  239 (365)
T ss_pred             CCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeE----ccCCCCCCCCceeEEEeeEEEEEECCCCCCCcEEEE
Confidence            35689999999964211         24689999999987    4678999999998754333333222 2221111   


Q ss_pred             ---------------------------------------------------------EEEEEecCCCCCCCEEEECCCCC
Q 013183          295 ---------------------------------------------------------EVKVTIPAGVDSGDTIRVPEAGN  317 (448)
Q Consensus       295 ---------------------------------------------------------~l~V~IppG~~~G~~i~~~g~G~  317 (448)
                                                                               +++|.||+|+++|++++++|+|+
T Consensus       240 ~g~G~~~~~~~GDL~v~v~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~~~~g~i~V~Ip~g~~~g~~iri~g~G~  319 (365)
T PRK14290        240 KGKGQSYGGRTGDLYVVLRVNNDPNIQRINDDLYVDQKINFPQAALGGEIEIKLFREKYNLKIPEGTQPGEVLKIKGAGM  319 (365)
T ss_pred             ccccCCCCCCCCCEEEEEEEcCCCCEEEecCCEEEEEEeCHHHHhCCCEEEEEcCCceEEEEECCccCCCcEEEECCCCC
Confidence                                                                     68999999999999999999999


Q ss_pred             CCCCCCCcccEEEEEEEecCCCcccCCCceEEE
Q 013183          318 AGGRGRQHGNLFIKLKVADDPIFSRDGADVYVD  350 (448)
Q Consensus       318 ~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~  350 (448)
                      +...+..+|||||+|+|..++.|++++.+|+.+
T Consensus       320 p~~~~~~~GDL~V~~~V~~P~~l~~~~~~ll~~  352 (365)
T PRK14290        320 PHLNGHGSGDLLVRINVEVPKRLTSKQKELIRE  352 (365)
T ss_pred             CCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence            876555689999999999999999999888665

>PRK14298 chaperone protein DnaJ; Provisional

Probab=99.38  E-value=8.4e-13  Score=135.17  Aligned_cols=118  Identities=27%  Similarity=0.581  Sum_probs=89.7

Q ss_pred             eeeCCCCCCCCccCC---------CccccCCCccceeEEEeCCccccCCCcCCceEEeeecceeecCC-cEEeceE----
Q 013183          229 FVPCDSCHGRGFPAD---------AKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDHCMTCKGS-GVVDGVK----  294 (448)
Q Consensus       229 ~~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~C~~C~g~-G~~~~~~----  294 (448)
                      ...|+.|+|+|....         ....+|+.|+|+|..    +...|..|+|.|.+.+..-.++..+ |+..+.+    
T Consensus       158 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~----~~~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~i~~~  233 (377)
T PRK14298        158 PKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQV----IESPCPVCSGTGKVRKTRKITVNVPAGADSGLRLKLS  233 (377)
T ss_pred             CCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcc----cCCCCCCCCCccEEEEEEEEEecCCCCCCCCCEEEEe
Confidence            367999999996431         225689999999987    4568999999998765333333321 2222111    


Q ss_pred             ----------------------------------------------------------EEEEEecCCCCCCCEEEECCCC
Q 013183          295 ----------------------------------------------------------EVKVTIPAGVDSGDTIRVPEAG  316 (448)
Q Consensus       295 ----------------------------------------------------------~l~V~IppG~~~G~~i~~~g~G  316 (448)
                                                                                .++|.||+|+++|++++++|+|
T Consensus       234 g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~i~v~ip~g~~~g~~lri~g~G  313 (377)
T PRK14298        234 GEGEAGSPGAPSGDLYIVLHVKEHDYFERVGDDIISEIPISFTQAALGADIMVPTLYGKVKMNIPPGTQTHSVFRLKDKG  313 (377)
T ss_pred             cccCCCCCCCCCcCEEEEEEEecCCCeEEEcCcEEEEEEeCHHHHhCCCeEEEecCCCCEEEEeCCCcccCCEEEECCCC
Confidence                                                                      5789999999999999999999


Q ss_pred             CCCCCCCCcccEEEEEEEecCCCcccCCCceEEE
Q 013183          317 NAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVD  350 (448)
Q Consensus       317 ~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~  350 (448)
                      .+...+...|||||+|+|..++.+++++.+|+.+
T Consensus       314 ~p~~~~~~~GDL~V~~~V~~P~~ls~~~~~ll~~  347 (377)
T PRK14298        314 MPRLHGHGKGDQLVKVIVKTPTKLTQEQKELLRE  347 (377)
T ss_pred             CCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence            9865555689999999999999999888777544

>PRK14294 chaperone protein DnaJ; Provisional

Probab=99.37  E-value=1.3e-12  Score=133.49  Aligned_cols=118  Identities=29%  Similarity=0.599  Sum_probs=89.7

Q ss_pred             eeeCCCCCCCCccCC-----CccccCCCccceeEEEeCCccccCCCcCCceEEeeecceeecCC-cEEeceE--------
Q 013183          229 FVPCDSCHGRGFPAD-----AKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDHCMTCKGS-GVVDGVK--------  294 (448)
Q Consensus       229 ~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~C~~C~g~-G~~~~~~--------  294 (448)
                      ...|+.|+|+|....     .....|+.|+|.|..    +...|..|+|.|.+.+..-.+.... |+..+.+        
T Consensus       161 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~----~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~  236 (366)
T PRK14294        161 PTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKV----IVSPCKTCHGQGRVRVSKTVQVKIPAGVDTGSRLRLRGEGE  236 (366)
T ss_pred             cccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCee----cCcCCCCCCCceEeecceeEEEecCCCCcCCcEEEEccCcc
Confidence            467999999997531     235699999999987    4578999999998754322222221 2221111        


Q ss_pred             ------------------------------------------------------EEEEEecCCCCCCCEEEECCCCCCCC
Q 013183          295 ------------------------------------------------------EVKVTIPAGVDSGDTIRVPEAGNAGG  320 (448)
Q Consensus       295 ------------------------------------------------------~l~V~IppG~~~G~~i~~~g~G~~~~  320 (448)
                                                                            .++|.||+|+++|++++|+|+|++..
T Consensus       237 ~~~~~~~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~~v~ip~g~~~g~~iri~G~G~p~~  316 (366)
T PRK14294        237 AGVRGGPPGDLYVFLTVEPHEFFERDGNDVHCKVPISFVQAALGAQIEVPTLEGERELKIPKGTQPGDIFRFKGKGIPSL  316 (366)
T ss_pred             CCCCCCCCCcEEEEEEEccCCcceecCCCEEEEEEeCHHHHhCCCeEEEECCCCcEEEEECCCcCCCCEEEECCCCCCCC
Confidence                                                                  46899999999999999999999876


Q ss_pred             CCCCcccEEEEEEEecCCCcccCCCceEEE
Q 013183          321 RGRQHGNLFIKLKVADDPIFSRDGADVYVD  350 (448)
Q Consensus       321 ~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~  350 (448)
                      .+..+|||||+|+|..|+.|+++..+|+..
T Consensus       317 ~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~  346 (366)
T PRK14294        317 RGGGRGDQIIEVEVKVPTRLTKKQEELLTE  346 (366)
T ss_pred             CCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence            555689999999999999999988777654

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.37  E-value=4e-13  Score=133.81  Aligned_cols=69  Identities=45%  Similarity=0.719  Sum_probs=65.3

Q ss_pred             CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hhHHHHHHHHHHHHHHhhhhhhhhhhhhc
Q 013183           79 SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNN-PSAKRKFQEIRDAYETLRDSEKRAQYDRR  147 (448)
Q Consensus        79 ~~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~  147 (448)
                      +..+|||.|||+.++|+..|||+|||++|+.||||++.++ .+++.+|++|-+||.+|+||.+|..||..
T Consensus       370 SkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg  439 (486)
T KOG0550|consen  370 SKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSG  439 (486)
T ss_pred             hhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhcccc
Confidence            4568999999999999999999999999999999999887 67999999999999999999999999985

>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.36  E-value=4.8e-13  Score=134.59  Aligned_cols=68  Identities=35%  Similarity=0.592  Sum_probs=64.8

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhccc
Q 013183           81 KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRS  149 (448)
Q Consensus        81 ~~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~  149 (448)
                      ..|+|.+|||+.++|+++|||.||++|...|||||. .+.|+|.|+.++.|||+|+|+.+|..||....
T Consensus       234 ~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~-~~~A~Eafk~Lq~Afevig~~~kR~eYd~e~~  301 (490)
T KOG0720|consen  234 ILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNM-IPRAEEAFKKLQVAFEVIGDSVKRKEYDLELK  301 (490)
T ss_pred             CCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccC-ChhHHHHHHHHHHHHHHhcchhhhhHHHHHHH
Confidence            579999999999999999999999999999999998 68999999999999999999999999999743

>PRK14285 chaperone protein DnaJ; Provisional

Probab=99.36  E-value=1.6e-12  Score=132.68  Aligned_cols=138  Identities=22%  Similarity=0.464  Sum_probs=96.4

Q ss_pred             EEeeeehhhhcccccceee--eceeeeCCCCCCCCccCC-----CccccCCCccceeEEEeCCccccCCCcCCceEEeee
Q 013183          207 VELVLSFAEAAKGCTKHVS--FDAFVPCDSCHGRGFPAD-----AKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKD  279 (448)
Q Consensus       207 ~~l~isl~e~~~G~~~~i~--~~~~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~  279 (448)
                      .++.++....+..|.-.-.  -.....|+.|+|+|....     .....|+.|+|.|.+    +...|..|+|.|.+.+.
T Consensus       139 ~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~----~~~~C~~C~G~g~v~~~  214 (365)
T PRK14285        139 NNINITRNMLCESCLGKKSEKGTSPSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKI----ISNPCKSCKGKGSLKKK  214 (365)
T ss_pred             EEEEeeecccCCCCCCcccCCCCCCccCCCccCceeEEecCceeEEeeecCCCCCcccc----cCCCCCCCCCCCEEecc
Confidence            3445554555443333221  123467999999996431     235799999999987    45789999999977543


Q ss_pred             cceeecCC-cEEeceE---------------------------------------------------------------E
Q 013183          280 HCMTCKGS-GVVDGVK---------------------------------------------------------------E  295 (448)
Q Consensus       280 ~C~~C~g~-G~~~~~~---------------------------------------------------------------~  295 (448)
                      .-.++..+ |+..+.+                                                               .
T Consensus       215 ~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~dL~~~~~Isl~eAl~G~~~~i~tldG~~  294 (365)
T PRK14285        215 ETIELKIPAGIDDNQQIKMRGKGSVNPDNQQYGDLYIKILIKPHKIFKRNGKDLYATLPISFTQAALGKEIKIQTIASKK  294 (365)
T ss_pred             EEEEEEECCCCCCCCEEEEeeccccCCCCCCCCCEEEEEEEecCCCeEEeccceEEEEecCHHHHhCCCEEEEECCCCCE
Confidence            32333221 2111111                                                               6


Q ss_pred             EEEEecCCCCCCCEEEECCCCCCCCCCCCcccEEEEEEEecCCCcccCCCceE
Q 013183          296 VKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVY  348 (448)
Q Consensus       296 l~V~IppG~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~  348 (448)
                      ++|.||+|+++|++++++|+|++...+...|||||+|+|+.|+.|.+++..|+
T Consensus       295 v~V~Ip~g~~~g~~irl~GkG~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~~l  347 (365)
T PRK14285        295 IKIKIPKGTENDEQIIIKNEGMPILHTEKFGNLILIIKIKTPKNLNSNAIKLL  347 (365)
T ss_pred             EEEEeCCCcCCCcEEEECCCCccCCCCCCCCCEEEEEEEECCCCCCHHHHHHH
Confidence            89999999999999999999998655555799999999999999988886553

>PRK10767 chaperone protein DnaJ; Provisional

Probab=99.34  E-value=2.2e-12  Score=132.07  Aligned_cols=141  Identities=24%  Similarity=0.505  Sum_probs=98.7

Q ss_pred             EEeeeehhhhcccccceeee--ceeeeCCCCCCCCccCC-----CccccCCCccceeEEEeCCccccCCCcCCceEEeee
Q 013183          207 VELVLSFAEAAKGCTKHVSF--DAFVPCDSCHGRGFPAD-----AKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKD  279 (448)
Q Consensus       207 ~~l~isl~e~~~G~~~~i~~--~~~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~  279 (448)
                      .++.++-...+..|...-.-  .....|+.|+|+|....     ....+|+.|+|.|..    +...|..|+|+|.+.+.
T Consensus       135 ~~v~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~----~~~~C~~C~G~g~v~~~  210 (371)
T PRK10767        135 KEIRIPTLVTCDTCHGSGAKPGTSPKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKI----IKDPCKKCHGQGRVEKE  210 (371)
T ss_pred             EEEeeeecccCCCCCCcccCCCCCCccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeE----CCCCCCCCCCCceEeee
Confidence            34444445555444332211  22367999999996421     234589999999987    45789999999987554


Q ss_pred             cceeecCC-cEEeceE--------------------------------------------------------------EE
Q 013183          280 HCMTCKGS-GVVDGVK--------------------------------------------------------------EV  296 (448)
Q Consensus       280 ~C~~C~g~-G~~~~~~--------------------------------------------------------------~l  296 (448)
                      ...++... |+..+.+                                                              .+
T Consensus       211 ~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~i  290 (371)
T PRK10767        211 KTLSVKIPAGVDTGDRIRLSGEGEAGERGGPAGDLYVQIHVKEHPIFERDGNDLYCEVPISFTTAALGGEIEVPTLDGRV  290 (371)
T ss_pred             eeEEEecCCCCCCCcEEEEecCccCCCCCCCCcCEEEEEEEeeCCCEEEecCCEEEEEEeCHHHHhCCCeEEEecCCCcE
Confidence            33333322 1111111                                                              57


Q ss_pred             EEEecCCCCCCCEEEECCCCCCCCCCCCcccEEEEEEEecCCCcccCCCceEEEe
Q 013183          297 KVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDS  351 (448)
Q Consensus       297 ~V~IppG~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~  351 (448)
                      +|.||||+++|++++++|+|.+...+...|||||+|+|..++.|++++.+|+.++
T Consensus       291 ~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~v~~~v~~P~~l~~~~~~ll~~l  345 (371)
T PRK10767        291 KLKIPEGTQTGKLFRLRGKGVKSVRSGARGDLYCQVVVETPVNLTKRQKELLEEF  345 (371)
T ss_pred             EEEeCCCCCCCCEEEECCCCcCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence            8999999999999999999998655556899999999999999999998876543

>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.34  E-value=3.6e-13  Score=125.77  Aligned_cols=67  Identities=43%  Similarity=0.759  Sum_probs=62.6

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhcc
Q 013183           81 KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRR  148 (448)
Q Consensus        81 ~~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~  148 (448)
                      ..|-|++|||+++|+.+||.+|||+||++||||++++ +++.+.|+.|.+|||+|.|.+.|..||-..
T Consensus        32 ~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~-~e~k~~F~~iAtayeilkd~e~rt~ydyal   98 (329)
T KOG0722|consen   32 AENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRD-PESKKLFVKIATAYEILKDNETRTQYDYAL   98 (329)
T ss_pred             chhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCC-chhhhhhhhhhcccccccchhhHHhHHHHh
Confidence            4589999999999999999999999999999999985 667799999999999999999999999864

>PTZ00100 DnaJ chaperone protein; Provisional

Probab=99.32  E-value=1.8e-12  Score=109.38  Aligned_cols=54  Identities=26%  Similarity=0.433  Sum_probs=48.4

Q ss_pred             CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhh
Q 013183           79 SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLR  136 (448)
Q Consensus        79 ~~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~  136 (448)
                      +...++|++|||++++|.+|||++||+|++++|||+++ +   .+.|++|++|||+|.
T Consensus        62 Ms~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgG-s---~~~~~kIneAyevL~  115 (116)
T PTZ00100         62 MSKSEAYKILNISPTASKERIREAHKQLMLRNHPDNGG-S---TYIASKVNEAKDLLL  115 (116)
T ss_pred             CCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCC-C---HHHHHHHHHHHHHHh
Confidence            44579999999999999999999999999999999864 2   568899999999995

>PRK14301 chaperone protein DnaJ; Provisional

Probab=99.32  E-value=3.7e-12  Score=130.33  Aligned_cols=137  Identities=26%  Similarity=0.490  Sum_probs=93.8

Q ss_pred             EEeeeehhhhcccccceeee--ceeeeCCCCCCCCccCC-----CccccCCCccceeEEEeCCccccCCCcCCceEEeee
Q 013183          207 VELVLSFAEAAKGCTKHVSF--DAFVPCDSCHGRGFPAD-----AKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKD  279 (448)
Q Consensus       207 ~~l~isl~e~~~G~~~~i~~--~~~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~  279 (448)
                      .++.++....+..|.-.-.-  .....|+.|+|+|....     .....|+.|+|.|.+    +...|..|+|.|.+.+.
T Consensus       137 k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~----~~~~C~~C~G~g~v~~~  212 (373)
T PRK14301        137 VTLRIPKNVTCDDCGGSGAAPGTSPETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRV----ITHPCPKCKGSGIVQQT  212 (373)
T ss_pred             EEEEeeecccCCCCCCcccCCCCCCcccCCccCeeEEEEEeeeEEEEEeCCCCCceeee----cCCCCCCCCCCceeccc
Confidence            34444445555444333221  23467999999997531     235789999999997    35689999999987543


Q ss_pred             cceeecCC-cEEeceE--------------------------------------------------------------EE
Q 013183          280 HCMTCKGS-GVVDGVK--------------------------------------------------------------EV  296 (448)
Q Consensus       280 ~C~~C~g~-G~~~~~~--------------------------------------------------------------~l  296 (448)
                      .-.++... |+..+.+                                                              .+
T Consensus       213 ~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDLiv~i~v~~h~~f~r~G~DL~~~~~Isl~eAl~G~~~~v~tldG~i  292 (373)
T PRK14301        213 RELKVRIPAGVDTGSRLRLRGEGEPGVHGGPPGDLYVVITVEDDKIFQRQGQDLVVTQEISFVQAALGDRIEVPTLDDPV  292 (373)
T ss_pred             eEEEEEeCCCCcCCCEEEEeccccCCCCCCCCcCEEEEEEEEECCCceeecCcEEEEEEecHHHHhCCCeEEEecCCccE
Confidence            22222221 1111111                                                              57


Q ss_pred             EEEecCCCCCCCEEEECCCCCCCCCCCCcccEEEEEEEecCCCcccCCCce
Q 013183          297 KVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADV  347 (448)
Q Consensus       297 ~V~IppG~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL  347 (448)
                      +|.||+|+++|++++|+|+|.+...+...|||||+|+|..++.+..+..++
T Consensus       293 ~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~I~~~V~~P~~l~~~q~~~  343 (373)
T PRK14301        293 TLDIPKGTQSGEVFRLRGKGLPYLGSSQKGDLLVEVSVVTPTKLTKRQEEL  343 (373)
T ss_pred             EEEECCCcCCCcEEEEcCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHH
Confidence            999999999999999999999876555689999999999887776555444

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=99.27  E-value=8.7e-12  Score=126.99  Aligned_cols=136  Identities=30%  Similarity=0.597  Sum_probs=91.9

Q ss_pred             Eeeeehhhhcccccceeee--ceeeeCCCCCCCCccCC---------CccccCCCccceeEEEeCCccccCCCcCCceEE
Q 013183          208 ELVLSFAEAAKGCTKHVSF--DAFVPCDSCHGRGFPAD---------AKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRI  276 (448)
Q Consensus       208 ~l~isl~e~~~G~~~~i~~--~~~~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~  276 (448)
                      .+.++....+..|...-.-  .....|+.|+|+|....         ....+|+.|+|.|..    +...|..|+|.|.+
T Consensus       137 ~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~----~~~~C~~C~G~g~v  212 (354)
T TIGR02349       137 EIEIPRKESCETCHGTGAKPGTDPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKI----IKEPCSTCKGKGRV  212 (354)
T ss_pred             EEEeecCCcCCCCCCCCCCCCCCCccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCccee----cCCCCCCCCCCcEe
Confidence            4444445544434332211  23567999999986421         224699999999997    35679999999986


Q ss_pred             eeecceee--------------cCCcEEe--c----e-------------------------------------------
Q 013183          277 IKDHCMTC--------------KGSGVVD--G----V-------------------------------------------  293 (448)
Q Consensus       277 ~~~~C~~C--------------~g~G~~~--~----~-------------------------------------------  293 (448)
                      .+..-.+.              .|.|...  .    .                                           
T Consensus       213 ~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~v~i~v~~h~~f~r~g~DL~~~~~isl~eAl~G~~~~i~~ld  292 (354)
T TIGR02349       213 KERKTITVKIPAGVDTGQRLRVSGKGNAGENGGPNGDLYVVIRVKPHKIFERDGNDLYIEVPISFTQAILGGEIEVPTLD  292 (354)
T ss_pred             cccceEEEEECCCCCCCCEEEEecCccCCCCCCCCCCEEEEEEEecCcceEEecCCEEEEEEeCHHHHhCCCeEEEecCC
Confidence            43222111              1111100  0    0                                           


Q ss_pred             EEEEEEecCCCCCCCEEEECCCCCCCCCCCCcccEEEEEEEecCCCcccCCCce
Q 013183          294 KEVKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADV  347 (448)
Q Consensus       294 ~~l~V~IppG~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL  347 (448)
                      -.++|.||+|+++|++++++|+|++...+..+|||||+|+|..++.++.+..++
T Consensus       293 G~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~i~~~v~~P~~l~~~~~~~  346 (354)
T TIGR02349       293 GDVKLKIPAGTQSGTVFRLKGKGVPRLRGNGRGDLLVTVKVETPKNLSKEQKEL  346 (354)
T ss_pred             ceEEEEECCcccCCcEEEECCCCcCCCCCCCCCCEEEEEEEECCCCCCHHHHHH
Confidence            057899999999999999999999876555789999999999888887766544

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14287 chaperone protein DnaJ; Provisional

Probab=99.27  E-value=7.7e-12  Score=127.90  Aligned_cols=116  Identities=26%  Similarity=0.608  Sum_probs=86.2

Q ss_pred             eeeCCCCCCCCccCC---------CccccCCCccceeEEEeCCccccCCCcCCceEEeeecceeecCC-cEEeceE----
Q 013183          229 FVPCDSCHGRGFPAD---------AKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDHCMTCKGS-GVVDGVK----  294 (448)
Q Consensus       229 ~~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~C~~C~g~-G~~~~~~----  294 (448)
                      ...|+.|+|+|....         ....+|+.|.|.|.+    +...|..|+|.|.+.+....++... |+..+.+    
T Consensus       155 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~----~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~  230 (371)
T PRK14287        155 PETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKI----IKQKCATCGGKGKVRKRKKINVKVPAGIDHGQQLRVS  230 (371)
T ss_pred             CcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCcc----ccccCCCCCCeeEEeeeEEEEEEECCcCCCCCEEEEc
Confidence            467999999996532         124689999999987    4567999999997654333333221 2111111    


Q ss_pred             ----------------------------------------------------------EEEEEecCCCCCCCEEEECCCC
Q 013183          295 ----------------------------------------------------------EVKVTIPAGVDSGDTIRVPEAG  316 (448)
Q Consensus       295 ----------------------------------------------------------~l~V~IppG~~~G~~i~~~g~G  316 (448)
                                                                                .++|.||||+++|++++++|+|
T Consensus       231 G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldg~i~v~ip~g~~~g~~~ri~g~G  310 (371)
T PRK14287        231 GQGEAGVNGGPPGDLYVVFNVKPHEFFERDGDDIYCEMPLTFPQVALGDEIEVPTLNGKVKLKIPAGTQTGTSFRLRGKG  310 (371)
T ss_pred             cCCcCCCCCCCCccEEEEEEEecCCCEEEecCCeEEEEeccHHHHhCCCEEEEEcCCCCEEEEECCCccCCcEEEEcCCC
Confidence                                                                      5789999999999999999999


Q ss_pred             CCCCCCCCcccEEEEEEEecCCCcccCCCceE
Q 013183          317 NAGGRGRQHGNLFIKLKVADDPIFSRDGADVY  348 (448)
Q Consensus       317 ~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~  348 (448)
                      .+...+...|||||+|+|..++.++++...|+
T Consensus       311 ~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll  342 (371)
T PRK14287        311 VPNVHGRGQGDQHVQVRVVTPKNLTEKEKELM  342 (371)
T ss_pred             ccCCCCCCCCCEEEEEEEEcCCCCCHHHHHHH
Confidence            98655556899999999999888877665443

>PRK14300 chaperone protein DnaJ; Provisional

Probab=99.27  E-value=1.4e-11  Score=126.01  Aligned_cols=112  Identities=29%  Similarity=0.636  Sum_probs=82.4

Q ss_pred             eeeCCCCCCCCccCC-----CccccCCCccceeEEEeCCccccCCCcCCceEEeeecceeecCC-cEEeceE--------
Q 013183          229 FVPCDSCHGRGFPAD-----AKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDHCMTCKGS-GVVDGVK--------  294 (448)
Q Consensus       229 ~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~C~~C~g~-G~~~~~~--------  294 (448)
                      ...|+.|+|+|....     ....+|+.|+|.|.+.    ...|..|+|.|.+.+..-.++... |+..+.+        
T Consensus       162 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~----~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~l~g~G~  237 (372)
T PRK14300        162 VTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQII----KNPCKKCHGMGRYHKQRNLSVNIPAGVENGTRIRHTGEGE  237 (372)
T ss_pred             CccCCCccCeEEEEEeeceEEEEEeCCCCCccceEe----CCCCCCCCCceEEEeeEEEEEEECCCCCCCcEEEEecccc
Confidence            467999999997531     1345899999999983    568999999998754322222211 1111111        


Q ss_pred             -------------------------------------------------------EEEEEecCCCCCCCEEEECCCCCCC
Q 013183          295 -------------------------------------------------------EVKVTIPAGVDSGDTIRVPEAGNAG  319 (448)
Q Consensus       295 -------------------------------------------------------~l~V~IppG~~~G~~i~~~g~G~~~  319 (448)
                                                                             .++|.||||+++|++++++|+|++.
T Consensus       238 ~~~~~~~~GDL~v~i~v~~h~~f~R~G~Dl~~~~~Isl~~Al~G~~~~i~~ldg~~i~v~Ip~g~~~g~~iri~g~G~p~  317 (372)
T PRK14300        238 AGIRGGNSGDLYVDIAIKPHDIYKVDGANLHCKLPISFVNAALGGEIEVPVIEGGKVNLTIPAGTQNGDQLRLRSKGMSK  317 (372)
T ss_pred             CCCCCCCCCCEEEEEEECCCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCCCEEEEEECCccCCCcEEEECCCCCCC
Confidence                                                                   6899999999999999999999986


Q ss_pred             CCCCCcccEEEEEEEecCCCcccCC
Q 013183          320 GRGRQHGNLFIKLKVADDPIFSRDG  344 (448)
Q Consensus       320 ~~g~~~GDL~v~i~v~~h~~f~R~G  344 (448)
                      ..+..+|||||+|+|..+..+.-+.
T Consensus       318 ~~~~~~GDL~V~~~v~~P~~ls~~q  342 (372)
T PRK14300        318 MRSTIRGDMLTHIHVEVPKNLSKRQ  342 (372)
T ss_pred             CCCCCCCCEEEEEEEECCCCCCHHH
Confidence            5556789999999999877655443

>PRK14284 chaperone protein DnaJ; Provisional

Probab=99.26  E-value=6.9e-12  Score=129.17  Aligned_cols=115  Identities=30%  Similarity=0.663  Sum_probs=84.3

Q ss_pred             eeeCCCCCCCCccCC-----CccccCCCccceeEEEeCCccccCCCcCCceEEeeecceeecCC-cEEece---------
Q 013183          229 FVPCDSCHGRGFPAD-----AKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDHCMTCKGS-GVVDGV---------  293 (448)
Q Consensus       229 ~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~C~~C~g~-G~~~~~---------  293 (448)
                      ...|+.|+|+|....     ....+|+.|+|.|.+    +...|..|+|.|.+.+..-.++..+ |+.+++         
T Consensus       175 ~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~----~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~  250 (391)
T PRK14284        175 IKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRV----ITDPCSVCRGQGRIKDKRSVHVHIPAGVDSGMRLKMEGYGD  250 (391)
T ss_pred             CeecCccCCeeEEEEEeceEEEEEECCCCCCCCcc----cCCcCCCCCCcceecceEEEEEEECCCCCCCCEEEEecccc
Confidence            467999999987431     134689999999987    4567999999987644322222221 222111         


Q ss_pred             -------------------------------------------------------EEEEEEecCCCCCCCEEEECCCCCC
Q 013183          294 -------------------------------------------------------KEVKVTIPAGVDSGDTIRVPEAGNA  318 (448)
Q Consensus       294 -------------------------------------------------------~~l~V~IppG~~~G~~i~~~g~G~~  318 (448)
                                                                             ..++|.||+|+++|++++|+|+|.+
T Consensus       251 ~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tld~g~~i~v~Ip~g~~~g~~~~i~g~G~p  330 (391)
T PRK14284        251 AGQNGAPAGDLYVFIDVEPHPVFERRGDDLILELPIGFVDAALGMKKEIPTLLKEGTCRLTIPEGIQSGTILKVRGQGFP  330 (391)
T ss_pred             CCCCCCCCCCEEEEEEEecCCCceeecCCEEEEEEecHHHHhCCCeEEEeecCCCcEEEEEECCccCCCeEEEECCCCCC
Confidence                                                                   1568999999999999999999998


Q ss_pred             CCCCCCcccEEEEEEEecCCCcccCCCce
Q 013183          319 GGRGRQHGNLFIKLKVADDPIFSRDGADV  347 (448)
Q Consensus       319 ~~~g~~~GDL~v~i~v~~h~~f~R~G~DL  347 (448)
                      ...+..+|||||+|+|..++.++.+..+|
T Consensus       331 ~~~~~~~GDL~V~~~v~~P~~l~~~q~~l  359 (391)
T PRK14284        331 NVHGKGRGDLLVRISVETPQNLSEEQKEL  359 (391)
T ss_pred             CCCCCCCCcEEEEEEEECCCCCCHHHHHH
Confidence            76555689999999999887776666554

>PRK14288 chaperone protein DnaJ; Provisional

Probab=99.26  E-value=1.6e-11  Score=125.52  Aligned_cols=114  Identities=24%  Similarity=0.513  Sum_probs=84.3

Q ss_pred             eeeeCCCCCCCCccCC-----CccccCCCccceeEEEeCCccccCCCcCCceEEeeecceeecCC-cEEeceE-------
Q 013183          228 AFVPCDSCHGRGFPAD-----AKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDHCMTCKGS-GVVDGVK-------  294 (448)
Q Consensus       228 ~~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~C~~C~g~-G~~~~~~-------  294 (448)
                      ....|+.|+|+|....     .....|+.|+|+|.+    +...|..|+|.|.+.+..-.+...+ |+..+.+       
T Consensus       155 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~----~~~~C~~C~G~g~v~~~~~l~V~IP~G~~~G~~i~l~g~G  230 (369)
T PRK14288        155 ALETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKI----IKTPCQACKGKTYILKDEEIDAIIPEGIDDQNRMVLKNKG  230 (369)
T ss_pred             CCcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceE----ccccCccCCCcceEEEEEEEEEecCCCCCCCCEEEEccCc
Confidence            3578999999996421     224589999999997    4567999999998765433333322 2221111       


Q ss_pred             -------------------------------------------------------EEEEEecCCCCCCCEEEECCCCCCC
Q 013183          295 -------------------------------------------------------EVKVTIPAGVDSGDTIRVPEAGNAG  319 (448)
Q Consensus       295 -------------------------------------------------------~l~V~IppG~~~G~~i~~~g~G~~~  319 (448)
                                                                             .++|.||||+++|++++++|+|.+.
T Consensus       231 ~~~~~~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~v~tLdG~~l~i~i~~~~~~g~~~~i~g~G~p~  310 (369)
T PRK14288        231 NEYEKGKRGDLYLEARVKEDEHFKREGCDLFIEAPVFFTTIALGHTIKVPSLKGDELELKIPRNARDRQTFAFRNEGVKH  310 (369)
T ss_pred             cCCCCCCCCCEEEEEEEEECCCcEEeCCEEEEEEecCHHHHhcCCEEEeecCCCCEEEEEeCCCCCCCcEEEEcCCCCCC
Confidence                                                                   5899999999999999999999986


Q ss_pred             CCCCCcccEEEEEEEecCCCcccCCC
Q 013183          320 GRGRQHGNLFIKLKVADDPIFSRDGA  345 (448)
Q Consensus       320 ~~g~~~GDL~v~i~v~~h~~f~R~G~  345 (448)
                      ..+...|||||+|+|+.++.+..+..
T Consensus       311 ~~~~~~GDL~v~~~v~~P~~ls~~q~  336 (369)
T PRK14288        311 PESSYRGSLIVELQVIYPKSLNKEQQ  336 (369)
T ss_pred             CCCCCCCCEEEEEEEECCCCCCHHHH
Confidence            54445699999999998877655443

>PRK14278 chaperone protein DnaJ; Provisional

Probab=99.24  E-value=3.6e-11  Score=123.30  Aligned_cols=130  Identities=29%  Similarity=0.544  Sum_probs=87.1

Q ss_pred             EEeeeehhhhcccccceee--eceeeeCCCCCCCCccCC---------CccccCCCccceeEEEeCCccccCCCcCCceE
Q 013183          207 VELVLSFAEAAKGCTKHVS--FDAFVPCDSCHGRGFPAD---------AKTKICSTCRGIGRVTIPPFTSTCSTCKGLGR  275 (448)
Q Consensus       207 ~~l~isl~e~~~G~~~~i~--~~~~~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~  275 (448)
                      .++.++-...+..|.-.-.  -.....|+.|+|+|....         .....|+.|+|.|.+    +..+|..|+|.|.
T Consensus       132 ~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~----~~~~C~~C~G~g~  207 (378)
T PRK14278        132 KQVTVDTAVLCDRCHGKGTAGDSKPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEV----IPDPCHECAGDGR  207 (378)
T ss_pred             EEEEEEeeccCCCCcCccCCCCCCceecCCccCceEEEEEEeccceeEEEEEECCCCCcccee----eCCCCCCCCCcee
Confidence            3444554555443432211  123467999999997431         125689999999997    3567999999998


Q ss_pred             EeeecceeecCC-cEEeceE------------------------------------------------------------
Q 013183          276 IIKDHCMTCKGS-GVVDGVK------------------------------------------------------------  294 (448)
Q Consensus       276 ~~~~~C~~C~g~-G~~~~~~------------------------------------------------------------  294 (448)
                      +.+..-.++... |+..+.+                                                            
T Consensus       208 v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tl  287 (378)
T PRK14278        208 VRARREITVKIPAGVGDGMRIRLAAQGEVGPGGGPAGDLYVEVHEQPHDVFVRDGDDLHCTVSVPMVDAALGTTVTVEAI  287 (378)
T ss_pred             EecceEEEEEECCCCCCCcEEEEccCcCCCCCCCCCCCEEEEEEECcCCCEEEcCCCEEEEEecCHHHHhcCCeEEEecC
Confidence            754322222211 1111111                                                            


Q ss_pred             ---EEEEEecCCCCCCCEEEECCCCCCCCCCCCcccEEEEEEEecCCCc
Q 013183          295 ---EVKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIF  340 (448)
Q Consensus       295 ---~l~V~IppG~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f  340 (448)
                         .++|.||+|+++|++++++|+|.+...+...|||||+|+|.-...+
T Consensus       288 d~~~i~v~ip~g~~~g~~lrl~g~G~p~~~~~~~GDL~V~~~V~~P~~L  336 (378)
T PRK14278        288 LDGPSEITIPPGTQPGSVITLRGRGMPHLRSGGRGDLHAHVEVVVPTRL  336 (378)
T ss_pred             CCCeEEEEeCCCcCCCcEEEECCCCCCCCCCCCCCCEEEEEEEEcCCCC
Confidence               6799999999999999999999986555568999999999844433

>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional

Probab=99.23  E-value=1.1e-11  Score=121.13  Aligned_cols=59  Identities=39%  Similarity=0.605  Sum_probs=52.2

Q ss_pred             CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---C----hhHHHHHHHHHHHHHHhhh
Q 013183           79 SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKN---N----PSAKRKFQEIRDAYETLRD  137 (448)
Q Consensus        79 ~~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~---~----~~a~~~f~~i~~Ay~vL~d  137 (448)
                      ....++|++|||++++|.+|||+|||+|+++||||++.+   +    +.++++|++|++||++|+.
T Consensus       197 ~~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~  262 (267)
T PRK09430        197 PTLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK  262 (267)
T ss_pred             CcHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence            345799999999999999999999999999999999743   1    2478999999999999986

>PRK14286 chaperone protein DnaJ; Provisional

Probab=99.23  E-value=2.3e-11  Score=124.41  Aligned_cols=135  Identities=26%  Similarity=0.457  Sum_probs=89.2

Q ss_pred             EEeeeehhhhcccccceee--eceeeeCCCCCCCCccCC-----CccccCCCccceeEEEeCCccccCCCcCCceEEeee
Q 013183          207 VELVLSFAEAAKGCTKHVS--FDAFVPCDSCHGRGFPAD-----AKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKD  279 (448)
Q Consensus       207 ~~l~isl~e~~~G~~~~i~--~~~~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~  279 (448)
                      .++.++....+.-|.-.-.  -.....|+.|+|+|....     .....|+.|+|+|.+.    ...|..|+|.|.+.+.
T Consensus       143 k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~----~~~C~~C~G~g~~~~~  218 (372)
T PRK14286        143 YKIEIPRLESCVDCNGSGASKGSSPTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVI----SNPCKTCGGQGLQEKR  218 (372)
T ss_pred             EEEEeeccccCCCCcCCCcCCCCCCccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEe----cccCCCCCCCcEEecc
Confidence            3445555555443332221  122367999999996421     2356899999999883    5679999999987542


Q ss_pred             cceeec--------------CCcEEe------c--------------------------------------------eEE
Q 013183          280 HCMTCK--------------GSGVVD------G--------------------------------------------VKE  295 (448)
Q Consensus       280 ~C~~C~--------------g~G~~~------~--------------------------------------------~~~  295 (448)
                      .-.++.              |.|...      +                                            .+.
T Consensus       219 ~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~  298 (372)
T PRK14286        219 RTINIKIPPGVETGSRLKVSGEGEAGPNGGPHGDLYVVTHIKKHELFERQGNDLILVRKISLAQAILGAEIEVPTIDGKK  298 (372)
T ss_pred             eEEEEEECCCCCCCCEEEECCccccCCCCCCCceEEEEEEEccCCCEEEecCCEEEEEEECHHHHhCCCEEEEeCCCCCE
Confidence            222221              111100      0                                            005


Q ss_pred             EEEEecCCCCCCCEEEECCCCCCCCCCCCcccEEEEEEEecCCCcccCCC
Q 013183          296 VKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGA  345 (448)
Q Consensus       296 l~V~IppG~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~  345 (448)
                      ++|.||+|+++|++++++|+|.+...+...|||||+|+|.-+..+..+..
T Consensus       299 i~v~ip~g~~~g~~~ri~G~G~P~~~~~~~GDL~V~~~V~~P~~Ls~~qk  348 (372)
T PRK14286        299 AKMKIPEGTESGQVFRLKGHGMPYLGAYGKGDQHVIVKIEIPKKITRRQR  348 (372)
T ss_pred             EEEEeCCccCCCcEEEECCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHH
Confidence            89999999999999999999998655556799999999996655544443

>PRK14279 chaperone protein DnaJ; Provisional

Probab=99.22  E-value=5.2e-11  Score=122.59  Aligned_cols=130  Identities=28%  Similarity=0.550  Sum_probs=87.9

Q ss_pred             EEeeeehhhhcccccceee--eceeeeCCCCCCCCccCC-----CccccCCCccceeEEEeCCccccCCCcCCceEEeee
Q 013183          207 VELVLSFAEAAKGCTKHVS--FDAFVPCDSCHGRGFPAD-----AKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKD  279 (448)
Q Consensus       207 ~~l~isl~e~~~G~~~~i~--~~~~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~  279 (448)
                      .++.++-...+.-|.-.-.  -.....|+.|+|+|....     ....+|+.|+|+|.+    +...|..|+|.|.+.+.
T Consensus       166 ~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~----i~~~C~~C~G~g~v~~~  241 (392)
T PRK14279        166 MPLRLTSPAPCTTCHGSGARPGTSPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSI----IEDPCEECKGTGVTTRT  241 (392)
T ss_pred             EEEeeeccccCCCCccccccCCCCCCCCCCCcceEEEEEEecceEEEEecCCCCceeEE----eCCcCCCCCCCeEEEEe
Confidence            3445555555443332221  123478999999997532     135799999999998    35689999999987543


Q ss_pred             cceeecCC-cEEeceE--------------------------------------------------------------EE
Q 013183          280 HCMTCKGS-GVVDGVK--------------------------------------------------------------EV  296 (448)
Q Consensus       280 ~C~~C~g~-G~~~~~~--------------------------------------------------------------~l  296 (448)
                      .-.++..+ |+..+.+                                                              .+
T Consensus       242 ~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~~ldg~i  321 (392)
T PRK14279        242 RTINVRIPPGVEDGQRIRLAGQGEAGLRGAPSGDLYVTVHVRPDKVFGRDGDDLTVTVPVSFTELALGSTLSVPTLDGPV  321 (392)
T ss_pred             eeeEEEeCCCCCCCcEEEEeCCccCCCCCCCCCCEEEEEEEecCCcceeecCcEEEEEEccHHHHcCCceEEEEcCCceE
Confidence            22222211 1111111                                                              57


Q ss_pred             EEEecCCCCCCCEEEECCCCCCCCCCCCcccEEEEEEEecCCCcc
Q 013183          297 KVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFS  341 (448)
Q Consensus       297 ~V~IppG~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~  341 (448)
                      +|+||+|+++|++++++|+|++.. +...|||||+|+|.-+..+.
T Consensus       322 ~v~Ip~g~~~g~~iri~g~G~p~~-~~~~GDL~I~~~v~~P~~Ls  365 (392)
T PRK14279        322 GVKVPAGTADGRILRVRGRGVPKR-SGGAGDLLVTVKVAVPPNLD  365 (392)
T ss_pred             EEEECCCCCCCCEEEECCCCCCCC-CCCCCCEEEEEEEECCCCCC
Confidence            899999999999999999999863 45689999999999655433

>PRK14281 chaperone protein DnaJ; Provisional

Probab=99.22  E-value=4.9e-11  Score=123.03  Aligned_cols=109  Identities=33%  Similarity=0.593  Sum_probs=80.0

Q ss_pred             eeeeCCCCCCCCccCCC---------ccccCCCccceeEEEeCCccccCCCcCCceEEeeecceeecCC-cEEeceE---
Q 013183          228 AFVPCDSCHGRGFPADA---------KTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDHCMTCKGS-GVVDGVK---  294 (448)
Q Consensus       228 ~~~~C~~C~G~G~~~~~---------~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~C~~C~g~-G~~~~~~---  294 (448)
                      ....|+.|+|+|.....         ...+|+.|+|.|.+.    ...|..|+|.|.+.+..-.++... |+..+.+   
T Consensus       178 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~----~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~  253 (397)
T PRK14281        178 ATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVV----KDRCPACYGEGIKQGEVTVKVTVPAGVQDGNYLTL  253 (397)
T ss_pred             CCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeee----CCCCCCCCCCccEecceEEEEecCCCCCCCCEEEE
Confidence            35689999999975321         246899999999983    568999999998754333333221 2211111   


Q ss_pred             -----------------------------------------------------------EEEEEecCCCCCCCEEEECCC
Q 013183          295 -----------------------------------------------------------EVKVTIPAGVDSGDTIRVPEA  315 (448)
Q Consensus       295 -----------------------------------------------------------~l~V~IppG~~~G~~i~~~g~  315 (448)
                                                                                 .++|.||+|+++|++++|+|+
T Consensus       254 ~g~G~~~~~~~~~GDL~i~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldg~i~v~ip~g~~~G~~~ri~g~  333 (397)
T PRK14281        254 RGQGNAGPRGGAPGDLIVVIEEKPHELFVRNGDDVIYNLAVSYPDLVLGTKVEVPTLDGAVKLTIPAGTQPETMLRIPGK  333 (397)
T ss_pred             ecccccCCCCCCCCcEEEEEEEcCCCCeEEecCCEEEEEEecHHHHhcCCeEEeecCCccEEEEeCCccCCCcEEEEcCC
Confidence                                                                       578999999999999999999


Q ss_pred             CCCCCCCCCcccEEEEEEEecCCCc
Q 013183          316 GNAGGRGRQHGNLFIKLKVADDPIF  340 (448)
Q Consensus       316 G~~~~~g~~~GDL~v~i~v~~h~~f  340 (448)
                      |.+...+...|||||+|+|.-...+
T Consensus       334 G~P~~~~~~~GDL~V~~~V~~P~~L  358 (397)
T PRK14281        334 GIGHLRGSGRGDQYVRVNVFVPKEV  358 (397)
T ss_pred             CCCCCCCCCCCCEEEEEEEEcCCCC
Confidence            9986555568999999999854433

>PRK14280 chaperone protein DnaJ; Provisional

Probab=99.21  E-value=2.9e-11  Score=123.98  Aligned_cols=130  Identities=26%  Similarity=0.547  Sum_probs=87.0

Q ss_pred             Eeeeehhhhcccccceee--eceeeeCCCCCCCCccCC---------CccccCCCccceeEEEeCCccccCCCcCCceEE
Q 013183          208 ELVLSFAEAAKGCTKHVS--FDAFVPCDSCHGRGFPAD---------AKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRI  276 (448)
Q Consensus       208 ~l~isl~e~~~G~~~~i~--~~~~~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~  276 (448)
                      ++.++....+..|.-.-.  -.....|+.|+|+|....         ....+|+.|+|.|.+    +...|..|+|+|.+
T Consensus       137 ~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~----~~~~C~~C~G~g~v  212 (376)
T PRK14280        137 EIEIPKEETCDTCHGSGAKPGTSKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQE----IKEKCPTCHGKGKV  212 (376)
T ss_pred             EEEEeeeccCCCCCCcccCCCCCCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCce----ecCCCCCCCCceEE
Confidence            444444444443332221  123467999999996421         135689999999987    45679999999987


Q ss_pred             eeecceeecCC-cEEeceE-------------------------------------------------------------
Q 013183          277 IKDHCMTCKGS-GVVDGVK-------------------------------------------------------------  294 (448)
Q Consensus       277 ~~~~C~~C~g~-G~~~~~~-------------------------------------------------------------  294 (448)
                      .+..-.++... |+..+.+                                                             
T Consensus       213 ~~~~~i~V~Ip~G~~~G~~i~l~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tld  292 (376)
T PRK14280        213 RKRKKINVKIPAGVDNGQQIRVSGEGEPGVNGGPAGDLYVVFRVRPHEFFERDGDDIYCEMPLTFAQAALGDEIEVPTLH  292 (376)
T ss_pred             EEEEEEEEEeCCCCcCCcEEEEcccccCCCCCCCCcCEEEEEEEecCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCC
Confidence            54322222211 1111111                                                             


Q ss_pred             -EEEEEecCCCCCCCEEEECCCCCCCCCCCCcccEEEEEEEecCCCcc
Q 013183          295 -EVKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFS  341 (448)
Q Consensus       295 -~l~V~IppG~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~  341 (448)
                       .++|.||+|+++|++++++|+|.+...+...|||||+|+|.....+.
T Consensus       293 g~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~v~~~v~~P~~Ls  340 (376)
T PRK14280        293 GKVKLKIPAGTQTGTQFRLKGKGVPNVRGYGQGDQYVVVRVVTPTKLT  340 (376)
T ss_pred             ceEEEEECCCCCCCcEEEEcCCCCCCCCCCCCCCEEEEEEEECCCCCC
Confidence             57899999999999999999999865555689999999999655443

>PRK14276 chaperone protein DnaJ; Provisional

Probab=99.21  E-value=3.3e-11  Score=123.64  Aligned_cols=109  Identities=28%  Similarity=0.631  Sum_probs=80.6

Q ss_pred             eeeCCCCCCCCccCC---------CccccCCCccceeEEEeCCccccCCCcCCceEEeeecceeecCC-cEEeceE----
Q 013183          229 FVPCDSCHGRGFPAD---------AKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDHCMTCKGS-GVVDGVK----  294 (448)
Q Consensus       229 ~~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~C~~C~g~-G~~~~~~----  294 (448)
                      ...|+.|+|+|....         ....+|+.|+|.|.+    +...|..|+|.|.+.+..-.++... |+..+.+    
T Consensus       163 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~----~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~l~  238 (380)
T PRK14276        163 PVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKE----IKEPCQTCHGTGHEKQAHTVSVKIPAGVETGQQIRLQ  238 (380)
T ss_pred             CccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCcc----ccCCCCCCCCceEEEEEEEEEEEeCCCccCCcEEEEe
Confidence            467999999997531         125689999999987    4578999999998754333333322 2221111    


Q ss_pred             ----------------------------------------------------------EEEEEecCCCCCCCEEEECCCC
Q 013183          295 ----------------------------------------------------------EVKVTIPAGVDSGDTIRVPEAG  316 (448)
Q Consensus       295 ----------------------------------------------------------~l~V~IppG~~~G~~i~~~g~G  316 (448)
                                                                                .++|.||+|+++|++++++|+|
T Consensus       239 G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tldg~i~v~ip~g~~~g~~~~i~g~G  318 (380)
T PRK14276        239 GQGEAGFNGGPYGDLYVVFRVEPSKKFERDGSTIYYTLPISFVQAALGDTVEVPTVHGDVELKIPAGTQTGKKFRLRGKG  318 (380)
T ss_pred             ccccCCCCCCCCcCEEEEEEEEECcceeeecceEEEEEecCHHHHhCCCeEEEEcCCCcEEEEECCCCCCCCEEEECCCC
Confidence                                                                      5789999999999999999999


Q ss_pred             CCCCCCCCcccEEEEEEEecCCCcc
Q 013183          317 NAGGRGRQHGNLFIKLKVADDPIFS  341 (448)
Q Consensus       317 ~~~~~g~~~GDL~v~i~v~~h~~f~  341 (448)
                      .+...+..+|||||+|+|.-...+.
T Consensus       319 ~p~~~~~~~GDL~V~~~v~~P~~l~  343 (380)
T PRK14276        319 APKLRGGGNGDQHVTVNIVTPTKLN  343 (380)
T ss_pred             cCCCCCCCCCCEEEEEEEECCCCCC
Confidence            9876555689999999999555443

>PRK14293 chaperone protein DnaJ; Provisional

Probab=99.21  E-value=3.3e-11  Score=123.48  Aligned_cols=118  Identities=25%  Similarity=0.468  Sum_probs=86.6

Q ss_pred             eeeCCCCCCCCccCC---------CccccCCCccceeEEEeCCccccCCCcCCceEEeeecceeec--------------
Q 013183          229 FVPCDSCHGRGFPAD---------AKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDHCMTCK--------------  285 (448)
Q Consensus       229 ~~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~C~~C~--------------  285 (448)
                      ...|+.|+|+|....         .....|+.|.|.|..    +...|..|.|.|.+.+..-.++.              
T Consensus       160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~----~~~~C~~C~G~g~v~~~~~~~V~IppG~~~G~~i~l~  235 (374)
T PRK14293        160 PTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQV----IEDPCDACGGQGVKQVTKKLKINIPAGVDTGTRLRVS  235 (374)
T ss_pred             CeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeE----eccCCCCCCCCcccccceEEEEEeCCCCCCCCEEEEc
Confidence            467999999997431         124689999999997    45689999999986542222221              


Q ss_pred             CCcEEe------ceE-------------------------------------------EEEEEecCCCCCCCEEEECCCC
Q 013183          286 GSGVVD------GVK-------------------------------------------EVKVTIPAGVDSGDTIRVPEAG  316 (448)
Q Consensus       286 g~G~~~------~~~-------------------------------------------~l~V~IppG~~~G~~i~~~g~G  316 (448)
                      |.|...      +.-                                           .++|.||+|+++|++++++|+|
T Consensus       236 g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ldG~~~i~ip~~~~~g~~~ri~g~G  315 (374)
T PRK14293        236 GEGDAGLRGGPPGDLYVYLFVKNDPEFRRDGINILSEIKISYLQAILGDTLEVDTVDGPVELTIPAGTQPNTVLTLENKG  315 (374)
T ss_pred             cCccCCCCCCCCcCEEEEEEEeCCCccChhhhceEEEeccCHHHHhCCCEEEecCCCCCEEEEeCCCCCCCCEEEECCCC
Confidence            111110      000                                           5789999999999999999999


Q ss_pred             CCCCCC-CCcccEEEEEEEecCCCcccCCCceEEE
Q 013183          317 NAGGRG-RQHGNLFIKLKVADDPIFSRDGADVYVD  350 (448)
Q Consensus       317 ~~~~~g-~~~GDL~v~i~v~~h~~f~R~G~DL~~~  350 (448)
                      .+...+ ...|||||+|+|..++.+++++.+|+..
T Consensus       316 ~p~~~~~~~~GDL~v~~~v~~P~~l~~~~~~l~~~  350 (374)
T PRK14293        316 VPRLGNPVARGDHLITVKVKIPTRISDEERELLEK  350 (374)
T ss_pred             CCCCCCCCCcCCEEEEEEEECCCCCCHHHHHHHHH
Confidence            986543 2579999999999998899888777544

>PRK14292 chaperone protein DnaJ; Provisional

Probab=99.19  E-value=4e-11  Score=122.80  Aligned_cols=116  Identities=26%  Similarity=0.566  Sum_probs=84.2

Q ss_pred             eeeeCCCCCCCCccCCC---------ccccCCCccceeEEEeCCccccCCCcCCceEEeeecceeecCC-cEEeceE---
Q 013183          228 AFVPCDSCHGRGFPADA---------KTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDHCMTCKGS-GVVDGVK---  294 (448)
Q Consensus       228 ~~~~C~~C~G~G~~~~~---------~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~C~~C~g~-G~~~~~~---  294 (448)
                      ....|..|+|+|.....         ....|+.|+|.|..    +...|..|.|.|.+.+..-.++... |+..+.+   
T Consensus       156 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~----~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~  231 (371)
T PRK14292        156 PPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQI----ITDPCTVCRGRGRTLKAETVKVKLPRGIDEGYRIRV  231 (371)
T ss_pred             CCccCCCCCCccEEEEEEeccCceEEEeeecCCCccccee----cCCCCCCCCCceEEeecceEEEEECCCCCCCcEEEE
Confidence            35789999999965311         24589999999987    4678999999997643222222111 1111111   


Q ss_pred             ---------------------------------------------------------EEEEEecCCCCCCCEEEECCCCC
Q 013183          295 ---------------------------------------------------------EVKVTIPAGVDSGDTIRVPEAGN  317 (448)
Q Consensus       295 ---------------------------------------------------------~l~V~IppG~~~G~~i~~~g~G~  317 (448)
                                                                               .++|.||+|+++|++++|+|+|+
T Consensus       232 ~G~G~~~~~~~GDL~v~i~v~~h~~f~r~g~dL~~~~~isl~eAl~G~~~~i~tldG~~~v~ip~g~~~g~~~~i~g~G~  311 (371)
T PRK14292        232 AGMGNEGPGGNGDLYVHIEMEPHPELRREQEHLIYEARIGFAKAALGGQITVPTLDGPQVIEVKPGTQHGDLHRLRGQGM  311 (371)
T ss_pred             ecCcCCCCCCCCCEEEEEEEecCCccccchhceeEEeccCHHHHhCCCeEEEECCCCCEEEecCCCcCCCcEEEECCCCC
Confidence                                                                     35799999999999999999999


Q ss_pred             CCCCCCCcccEEEEEEEecCCCcccCCCce
Q 013183          318 AGGRGRQHGNLFIKLKVADDPIFSRDGADV  347 (448)
Q Consensus       318 ~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL  347 (448)
                      +...+..+|||||+|+|..++.+..+...|
T Consensus       312 p~~~~~~~GDL~V~~~v~~P~~l~~~q~~l  341 (371)
T PRK14292        312 PRLQGAGTGDLIVEYEIAVPKQLSPEAREA  341 (371)
T ss_pred             CCCCCCCCCCEEEEEEEECCCCCCHHHHHH
Confidence            876566789999999999888776555443

>PRK14289 chaperone protein DnaJ; Provisional

Probab=99.19  E-value=6e-11  Score=122.12  Aligned_cols=127  Identities=24%  Similarity=0.510  Sum_probs=87.7

Q ss_pred             EEeeeehhhhcccccceee--eceeeeCCCCCCCCccCCC---------ccccCCCccceeEEEeCCccccCCCcCCceE
Q 013183          207 VELVLSFAEAAKGCTKHVS--FDAFVPCDSCHGRGFPADA---------KTKICSTCRGIGRVTIPPFTSTCSTCKGLGR  275 (448)
Q Consensus       207 ~~l~isl~e~~~G~~~~i~--~~~~~~C~~C~G~G~~~~~---------~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~  275 (448)
                      .++.++-...+..|...-.  -.....|+.|+|+|.....         ....|+.|+|.|.+    ....|..|+|.|.
T Consensus       147 ~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~----~~~~C~~C~G~g~  222 (386)
T PRK14289        147 KKFKVKKYVPCSHCHGTGAEGNNGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKI----IKKKCKKCGGEGI  222 (386)
T ss_pred             EEEEEEeecccCCCCCCCCCCCCCCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccc----cCcCCCCCCCCcE
Confidence            3445555555555543332  2345779999999975321         25689999999987    4578999999998


Q ss_pred             EeeecceeecCC-cEEeceE------------------------------------------------------------
Q 013183          276 IIKDHCMTCKGS-GVVDGVK------------------------------------------------------------  294 (448)
Q Consensus       276 ~~~~~C~~C~g~-G~~~~~~------------------------------------------------------------  294 (448)
                      +.+..-.++... |+..+.+                                                            
T Consensus       223 v~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~l  302 (386)
T PRK14289        223 VYGEEVITVKIPAGVAEGMQLSMNGKGNAGKHGGVNGDLLVVIEEEPHPELIRDENDLIYNLLLSVPTAALGGAVEVPTI  302 (386)
T ss_pred             EeeeEEEEEEeCCCCCCCCEEEEeccccCCCCCCCCccEEEEEEEecCCcccccccceeEEeccCHHHHhCCCeEEeecC
Confidence            754322222211 1111111                                                            


Q ss_pred             --EEEEEecCCCCCCCEEEECCCCCCCCCCCCcccEEEEEEEecC
Q 013183          295 --EVKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADD  337 (448)
Q Consensus       295 --~l~V~IppG~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h  337 (448)
                        .++|.||+|+++|++++++|+|.+...+...|||||+|+|+-.
T Consensus       303 dg~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~v~~~v~~P  347 (386)
T PRK14289        303 DGKAKVKIEAGTQPGKVLRLRNKGLPSVNGYGTGDLLVNVSVYIP  347 (386)
T ss_pred             CceEEEEECCccCCCcEEEECCCCcCCCCCCCCCcEEEEEEEEeC
Confidence              6899999999999999999999986555678999999999843

>PRK14297 chaperone protein DnaJ; Provisional

Probab=99.18  E-value=9.7e-11  Score=120.30  Aligned_cols=108  Identities=29%  Similarity=0.554  Sum_probs=80.8

Q ss_pred             eeeCCCCCCCCccCC---------CccccCCCccceeEEEeCCccccCCCcCCceEEeeecceeecCC-cEEeceE----
Q 013183          229 FVPCDSCHGRGFPAD---------AKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDHCMTCKGS-GVVDGVK----  294 (448)
Q Consensus       229 ~~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~C~~C~g~-G~~~~~~----  294 (448)
                      ...|+.|+|+|....         .....|+.|+|.|.+    +...|..|+|.|.+.+..-...... |+..+.+    
T Consensus       165 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~----~~~~C~~C~G~g~v~~~~~i~V~Ip~G~~~G~~I~l~  240 (380)
T PRK14297        165 PKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKV----IEDPCNKCHGKGKVRKNRKIKVNVPAGVDTGNVIPLR  240 (380)
T ss_pred             CccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceE----cCCCCCCCCCCeEEEeEeEEEEEeCCCCCCCcEEEEe
Confidence            567999999996521         235689999999987    4578999999997654443444322 3222221    


Q ss_pred             ----------------------------------------------------------EEEEEecCCCCCCCEEEECCCC
Q 013183          295 ----------------------------------------------------------EVKVTIPAGVDSGDTIRVPEAG  316 (448)
Q Consensus       295 ----------------------------------------------------------~l~V~IppG~~~G~~i~~~g~G  316 (448)
                                                                                .++|.||+|+++|++++++|+|
T Consensus       241 g~G~~~~~~~~~GDL~v~v~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldg~~~v~ip~g~~~g~~~ri~g~G  320 (380)
T PRK14297        241 GQGEHGKNGGPTGDLYINIRVAPHKTFKRKGFDIYIDKHISFAKAALGTEIKVPTVDGEVKYEVPAGTQPGTVFRLKGKG  320 (380)
T ss_pred             cCccCCCCCCCCccEEEEEEEcCCCCEEEeCCCEEEEEEeCHHHHhCCCcEEEEcCCCcEEEEECCCcCCCCEEEEcCCC
Confidence                                                                      5789999999999999999999


Q ss_pred             CCCCCCCCcccEEEEEEEecCCCc
Q 013183          317 NAGGRGRQHGNLFIKLKVADDPIF  340 (448)
Q Consensus       317 ~~~~~g~~~GDL~v~i~v~~h~~f  340 (448)
                      .+...+...|||||+|+|.-...+
T Consensus       321 ~p~~~~~~~GDL~v~~~v~~P~~l  344 (380)
T PRK14297        321 VPRVNSTGRGNQYVTVIVDIPKKL  344 (380)
T ss_pred             cCCCCCCCCCcEEEEEEEEcCCCC
Confidence            986555568999999999944433

>PHA02624 large T antigen; Provisional

Probab=99.17  E-value=2.4e-11  Score=128.30  Aligned_cols=60  Identities=28%  Similarity=0.557  Sum_probs=56.2

Q ss_pred             CCCcccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhh
Q 013183           81 KRDPYELLGVPENA--SQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQY  144 (448)
Q Consensus        81 ~~~~y~iLgv~~~a--~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Y  144 (448)
                      ..++|++|||+++|  +.+|||+|||++|++||||++++    +++|++|++||++|+|+.+|..|
T Consensus        10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGd----eekfk~Ln~AYevL~d~~k~~r~   71 (647)
T PHA02624         10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGD----EEKMKRLNSLYKKLQEGVKSARQ   71 (647)
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCc----HHHHHHHHHHHHHHhcHHHhhhc
Confidence            45899999999999  99999999999999999999753    67999999999999999999999

>PRK14295 chaperone protein DnaJ; Provisional

Probab=99.16  E-value=1.5e-10  Score=119.14  Aligned_cols=127  Identities=27%  Similarity=0.510  Sum_probs=85.7

Q ss_pred             Eeeeehhhhcccccceee--eceeeeCCCCCCCCccCC-----CccccCCCccceeEEEeCCccccCCCcCCceEEeeec
Q 013183          208 ELVLSFAEAAKGCTKHVS--FDAFVPCDSCHGRGFPAD-----AKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDH  280 (448)
Q Consensus       208 ~l~isl~e~~~G~~~~i~--~~~~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~  280 (448)
                      ++.++-...+.-|.-.-.  -.....|+.|+|+|....     ....+|+.|+|+|.+    +...|..|.|.|.+.+..
T Consensus       160 ~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~----~~~~C~~C~G~g~~~~~~  235 (389)
T PRK14295        160 PLRLTSQAPCPACSGTGAKNGTTPRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLI----ADDPCLVCKGSGRAKSSR  235 (389)
T ss_pred             EEEeeccccCCCCcccccCCCCCCcCCCCCCCEeEEEEEecceEEEEecCCCcceeEE----eccCCCCCCCCceEeeee
Confidence            444554444443332221  123467999999986421     235689999999998    457899999999875432


Q ss_pred             ceeecCC-cEEeceE---------------------------------------------------------------EE
Q 013183          281 CMTCKGS-GVVDGVK---------------------------------------------------------------EV  296 (448)
Q Consensus       281 C~~C~g~-G~~~~~~---------------------------------------------------------------~l  296 (448)
                      -.+.... |+..+.+                                                               .+
T Consensus       236 ~l~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~tldG~~~  315 (389)
T PRK14295        236 TMQVRIPAGVSDGQRIRLRGKGAPGERGGPAGDLYVVVHVDPHPVFGRSGDNLTVTVPVTFPEAALGAEVRVPTLGGPPV  315 (389)
T ss_pred             EEEEEeCCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEecCCCEEEecCCEEEEEeecHHHHhCCCeEEEECCCCCEE
Confidence            2222211 1111111                                                               68


Q ss_pred             EEEecCCCCCCCEEEECCCCCCCCCCCCcccEEEEEEEecCCC
Q 013183          297 KVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPI  339 (448)
Q Consensus       297 ~V~IppG~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~  339 (448)
                      +|.||+|+++|++++++|+|.+.. +...|||||+|+|.-...
T Consensus       316 ~v~ip~g~~~g~~iri~G~G~p~~-~~~~GDL~i~~~v~~P~~  357 (389)
T PRK14295        316 TVKLPPGTPNGRVLRVRGKGAVRK-DGTRGDLLVTVEVAVPKD  357 (389)
T ss_pred             EEEECCccCCCcEEEECCCCcCCC-CCCCCCEEEEEEEECCCC
Confidence            999999999999999999999863 456899999999984443

>PRK14291 chaperone protein DnaJ; Provisional

Probab=99.15  E-value=1.7e-10  Score=118.57  Aligned_cols=126  Identities=30%  Similarity=0.539  Sum_probs=85.4

Q ss_pred             EEeeeehhhhcccccceee--eceeeeCCCCCCCCccCC-----CccccCCCccceeEEEeCCccccCCCcCCceEEeee
Q 013183          207 VELVLSFAEAAKGCTKHVS--FDAFVPCDSCHGRGFPAD-----AKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKD  279 (448)
Q Consensus       207 ~~l~isl~e~~~G~~~~i~--~~~~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~  279 (448)
                      .++.++-...+..|.-.-.  -.....|+.|+|+|....     .....|+.|+|.|.+     ...|..|+|.|.+.+.
T Consensus       149 ~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~-----~~~C~~C~G~g~v~~~  223 (382)
T PRK14291        149 VSLEVPRYVPCEACGGTGYDPGSGEKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGVL-----REPCSKCNGRGLVIKK  223 (382)
T ss_pred             EEEEEeeeccCCCCccccCCCCCCCccCCCCCCceEEEEecceEEEEecCCCCCCceEE-----ccCCCCCCCCceEEee
Confidence            3444444544443332221  123467999999996532     235689999999952     4689999999987543


Q ss_pred             cceeecCC-cEEeceE---------------------------------------------------------------E
Q 013183          280 HCMTCKGS-GVVDGVK---------------------------------------------------------------E  295 (448)
Q Consensus       280 ~C~~C~g~-G~~~~~~---------------------------------------------------------------~  295 (448)
                      .-.+.... |+..+.+                                                               .
T Consensus       224 ~~l~V~Ip~G~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~~~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~  303 (382)
T PRK14291        224 ETIKVRIPPGVDNGSKLRVPGKGHAGRFGGPPGDLYIIVKVKPHPLFERRGDNLYLDVNITVAEAVLGTELEVPLLDGKK  303 (382)
T ss_pred             eEEEEEeCCCCCCCCEEEEecCcCCCCCCCCCccEEEEEEEccCCCeeeecCCeEEEEEeeHHHHhCCCEEEEecCCCCE
Confidence            33333221 2211111                                                               5


Q ss_pred             EEEEecCCCCCCCEEEECCCCCCCCCCCCcccEEEEEEEecC
Q 013183          296 VKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADD  337 (448)
Q Consensus       296 l~V~IppG~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h  337 (448)
                      ++|.||||+++|++++|+|+|++...+..+|||||+|+|.-.
T Consensus       304 l~V~Ip~g~~~G~~i~i~G~G~p~~~~~~~GDL~V~~~V~~P  345 (382)
T PRK14291        304 EKVKIPPGTKEGDKIRVPGKGMPRLKGSGYGDLVVRVHIDVP  345 (382)
T ss_pred             EEEEECCccCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEeC
Confidence            899999999999999999999987655568999999999843

>PRK14277 chaperone protein DnaJ; Provisional

Probab=99.15  E-value=1e-10  Score=120.35  Aligned_cols=107  Identities=32%  Similarity=0.641  Sum_probs=78.4

Q ss_pred             eeeCCCCCCCCccCC---------CccccCCCccceeEEEeCCccccCCCcCCceEEeeecceeecCC-cEEeceE----
Q 013183          229 FVPCDSCHGRGFPAD---------AKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDHCMTCKGS-GVVDGVK----  294 (448)
Q Consensus       229 ~~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~C~~C~g~-G~~~~~~----  294 (448)
                      ...|+.|+|+|....         ....+|+.|+|.|.+    +...|..|+|+|.+.+..-.++... |+..+.+    
T Consensus       172 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~----~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~  247 (386)
T PRK14277        172 PVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKI----ITDPCNKCGGTGRIRRRRKIKVNIPAGIDDGQMITLR  247 (386)
T ss_pred             CccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceee----ccCCCCCCCCCcEEeeeeEEEEecCCCccCCcEEEEc
Confidence            467999999986421         124689999999998    4568999999998754333333221 1111111    


Q ss_pred             ----------------------------------------------------------EEEEEecCCCCCCCEEEECCCC
Q 013183          295 ----------------------------------------------------------EVKVTIPAGVDSGDTIRVPEAG  316 (448)
Q Consensus       295 ----------------------------------------------------------~l~V~IppG~~~G~~i~~~g~G  316 (448)
                                                                                .++|.||+|+++|++++++|+|
T Consensus       248 g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~~v~ip~g~~~g~~~ri~g~G  327 (386)
T PRK14277        248 GEGEPGIKGGPNGDLYIVIKVKPHPLFKREGYNVYLEMPITFTDAALGGEIEIPTLDGKVKFTIPEGTQTGTKFRLRGKG  327 (386)
T ss_pred             cccccCCCCCCCccEEEEEEEecCCCeEEecCCEEEEEEcCHHHHhCCCEEEEEcCCCCEEEEECCCCCCCCEEEECCCC
Confidence                                                                      4688999999999999999999


Q ss_pred             CCCCCCCCcccEEEEEEEecCCC
Q 013183          317 NAGGRGRQHGNLFIKLKVADDPI  339 (448)
Q Consensus       317 ~~~~~g~~~GDL~v~i~v~~h~~  339 (448)
                      .+...+...|||||+|+|.-...
T Consensus       328 ~p~~~~~~~GDL~v~~~V~~P~~  350 (386)
T PRK14277        328 IPHLRGRGRGDQIVKVYIEVPKK  350 (386)
T ss_pred             CCCCCCCCCCCEEEEEEEEeCCC
Confidence            98655556799999999984433

>PRK14296 chaperone protein DnaJ; Provisional

Probab=99.13  E-value=1.1e-10  Score=119.39  Aligned_cols=129  Identities=20%  Similarity=0.478  Sum_probs=85.0

Q ss_pred             Eeeeehhhhcccccceeee--ceeeeCCCCCCCCccCCC---------ccccCCCccceeEEEeCCccccCCCcCCceEE
Q 013183          208 ELVLSFAEAAKGCTKHVSF--DAFVPCDSCHGRGFPADA---------KTKICSTCRGIGRVTIPPFTSTCSTCKGLGRI  276 (448)
Q Consensus       208 ~l~isl~e~~~G~~~~i~~--~~~~~C~~C~G~G~~~~~---------~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~  276 (448)
                      ++.++-...+..|.-.-.-  .....|+.|+|+|.....         ...+|+.|+|.|.+    +...|+.|+|.|.+
T Consensus       143 ~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~----~~~~C~~C~G~g~v  218 (372)
T PRK14296        143 IIELDLLTNCSKCFGSGAESNSDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKI----IKNKCKNCKGKGKY  218 (372)
T ss_pred             EEEEeeeeccCCCCCCccCCCCCCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCccee----ecccccCCCCceEE
Confidence            4444444444444332221  234679999999975321         24689999999998    45689999999976


Q ss_pred             eeecceeecCC-cEEeceE-------------------------------------------------------------
Q 013183          277 IKDHCMTCKGS-GVVDGVK-------------------------------------------------------------  294 (448)
Q Consensus       277 ~~~~C~~C~g~-G~~~~~~-------------------------------------------------------------  294 (448)
                      .+..-.++... |+..+.+                                                             
T Consensus       219 ~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~v~v~~h~~F~R~~G~DL~~~~~Isl~eAllG~~~~i~tl  298 (372)
T PRK14296        219 LERKKIEVNIPKGIRPNQQIKLSQKGHASLNNGVNGDLIIDIYLKESKVFEIINNNDILMTYNISYLDAILGNEIIIKTL  298 (372)
T ss_pred             EEEEEEEEEECCCCCCCCEEEEeccccCCCCCCCCccEEEEEEEeCCCCEEEeCCCcEEEEEecCHHHHhCCCEEEeeCC
Confidence            43222222211 1111111                                                             


Q ss_pred             --EEEEEecCCCCCCCEEEECCCCCCCC-CCCCcccEEEEEEEecCCCc
Q 013183          295 --EVKVTIPAGVDSGDTIRVPEAGNAGG-RGRQHGNLFIKLKVADDPIF  340 (448)
Q Consensus       295 --~l~V~IppG~~~G~~i~~~g~G~~~~-~g~~~GDL~v~i~v~~h~~f  340 (448)
                        .++|.||+|+++|++++++|+|.+.. .+...|||||+|+|.-...+
T Consensus       299 dG~~~v~ip~~t~~g~~~ri~GkGmP~~~~~~~~GDL~V~~~V~~P~~L  347 (372)
T PRK14296        299 DGDIKYKLPKSINSNELIIINNKGLYKSINKDKRGDLIIKVNIVVPKNL  347 (372)
T ss_pred             CCCEEEEECCccCCCcEEEEcCCCCCcCCCCCCcCCEEEEEEEECCCCC
Confidence              57899999999999999999999743 23457999999999954433

>PRK01773 hscB co-chaperone HscB; Provisional

Probab=99.11  E-value=1.3e-10  Score=105.89  Aligned_cols=67  Identities=27%  Similarity=0.421  Sum_probs=58.4

Q ss_pred             CCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCChh-----HHHHHHHHHHHHHHhhhhhhhhhhhhcc
Q 013183           82 RDPYELLGVPEN--ASQDEIKKAFHMLAKQYHPDANKNNPS-----AKRKFQEIRDAYETLRDSEKRAQYDRRR  148 (448)
Q Consensus        82 ~~~y~iLgv~~~--a~~~eIk~ayr~la~~~HPD~~~~~~~-----a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~  148 (448)
                      .|||++||+++.  .+..+++++|++|++++|||+....++     +.+.-..||+||.+|+||.+|+.|=-..
T Consensus         2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~L   75 (173)
T PRK01773          2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIAL   75 (173)
T ss_pred             CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHHh
Confidence            499999999985  899999999999999999999876543     3456779999999999999999997643

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=99.11  E-value=3.1e-10  Score=117.45  Aligned_cols=108  Identities=27%  Similarity=0.565  Sum_probs=79.8

Q ss_pred             eeeeCCCCCCCCccCC---------CccccCCCccceeEEEeCCccccCCCcCCceEEeeecceeecCC-cEEeceE---
Q 013183          228 AFVPCDSCHGRGFPAD---------AKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDHCMTCKGS-GVVDGVK---  294 (448)
Q Consensus       228 ~~~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~C~~C~g~-G~~~~~~---  294 (448)
                      ....|+.|+|+|....         ....+|+.|+|+|.++.  ....|..|+|.|.+.+..-.++... |+..+.+   
T Consensus       165 ~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~--~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~dG~~I~~  242 (421)
T PTZ00037        165 AFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIP--ESKKCKNCSGKGVKKTRKILEVNIDKGVPNQHKITF  242 (421)
T ss_pred             CCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceecc--ccccCCcCCCcceeeeeeEEEEeeCCCCCCCcEEEE
Confidence            4568999999996321         23568999999998742  2468999999998765444444332 3322222   


Q ss_pred             -----------------------------------------------------------EEEEEecCC--CCCCCEEEEC
Q 013183          295 -----------------------------------------------------------EVKVTIPAG--VDSGDTIRVP  313 (448)
Q Consensus       295 -----------------------------------------------------------~l~V~IppG--~~~G~~i~~~  313 (448)
                                                                                 .+.|.||||  +++|++++|+
T Consensus       243 ~G~Gd~~~~~~pGDLiv~I~~~ph~~F~R~G~DL~~~~~Isl~eAllG~~i~I~tLdG~~l~I~ip~g~vt~pg~~~~I~  322 (421)
T PTZ00037        243 HGEADEKPNEIPGNVVFILNEKPHDTFKREGGDLFITKKISLYEALTGFVFYITHLDGRKLLVNTPPGEVVKPGDIKVIN  322 (421)
T ss_pred             ecccCCCCCCCCCcEEEEEEecCCCCcEEeCCeEEEEEeCCHHHHhcCCEEEeeCCCCCeEEEEeCCCcccCCCcEEEeC
Confidence                                                                       589999999  9999999999


Q ss_pred             CCCCCCCCC-CCcccEEEEEEEecC
Q 013183          314 EAGNAGGRG-RQHGNLFIKLKVADD  337 (448)
Q Consensus       314 g~G~~~~~g-~~~GDL~v~i~v~~h  337 (448)
                      |+|.+...+ ...|||||+|+|.-.
T Consensus       323 geGmP~~~~~~~rGDL~V~~~V~~P  347 (421)
T PTZ00037        323 NEGMPTYKSPFKKGNLYVTFEVIFP  347 (421)
T ss_pred             CCCcccCCCCCCCCCEEEEEEEEcC
Confidence            999986443 357999999999844

>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation

Probab=99.10  E-value=5.2e-11  Score=91.51  Aligned_cols=57  Identities=49%  Similarity=1.036  Sum_probs=44.7

Q ss_pred             CCCCCCCCccCCCccccCCCccceeEEEeC--------CccccCCCcCCceEEe-eecceeecCCc
Q 013183          232 CDSCHGRGFPADAKTKICSTCRGIGRVTIP--------PFTSTCSTCKGLGRII-KDHCMTCKGSG  288 (448)
Q Consensus       232 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~--------~~~~~C~~C~G~G~~~-~~~C~~C~g~G  288 (448)
                      |+.|+|+|........+|+.|+|+|+++..        .++++|+.|+|+|+++ +++|++|+|.|
T Consensus         1 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i~~~~C~~C~G~g   66 (66)
T PF00684_consen    1 CPKCNGTGAKPGKKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKIIEKDPCKTCKGSG   66 (66)
T ss_dssp             -CCCTTTSB-STTT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-TSSB-SSSTTSS
T ss_pred             CCcCCCcccCCCCCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEECCCCCCCCCCcC
Confidence            899999999888899999999999997642        2478999999999999 99999999975

DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.

>PRK14283 chaperone protein DnaJ; Provisional

Probab=99.10  E-value=1.3e-10  Score=119.24  Aligned_cols=106  Identities=32%  Similarity=0.638  Sum_probs=77.0

Q ss_pred             eeeCCCCCCCCccCC---------CccccCCCccceeEEEeCCccccCCCcCCceEEeeecceeecCC-cEEeceE----
Q 013183          229 FVPCDSCHGRGFPAD---------AKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDHCMTCKGS-GVVDGVK----  294 (448)
Q Consensus       229 ~~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~C~~C~g~-G~~~~~~----  294 (448)
                      ...|+.|+|+|....         ....+|+.|+|.|..    ....|..|+|+|.+.+.....+... |+..+.+    
T Consensus       163 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~----~~~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~i~l~  238 (378)
T PRK14283        163 VKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKI----VEKPCSNCHGKGVVRETKTISVKIPAGVETGSRLRVS  238 (378)
T ss_pred             CccCCCcCCccEEEEEEeccCceEEEEEECCCCCcccee----cCCCCCCCCCceeeccceeEEEEECCCCCCCcEEEEe
Confidence            467999999997531         124689999999987    3567999999998754333332221 1100000    


Q ss_pred             ----------------------------------------------------------EEEEEecCCCCCCCEEEECCCC
Q 013183          295 ----------------------------------------------------------EVKVTIPAGVDSGDTIRVPEAG  316 (448)
Q Consensus       295 ----------------------------------------------------------~l~V~IppG~~~G~~i~~~g~G  316 (448)
                                                                                .++|.||+|+++|++++++|+|
T Consensus       239 g~G~~~~~~~~~GDLiv~i~v~~~~~f~r~G~DL~~~~~Isl~eAl~G~~~~i~tldG~i~v~ip~g~~~g~~~ri~g~G  318 (378)
T PRK14283        239 GEGEMGDRGGEPGDLYVVIKVKPHKIFRREGANLYYEKPISFVQAALGDTVDVPTIDGPVELKIPAGTQSGTTFRLKGHG  318 (378)
T ss_pred             ccccCCCCCCCCccEEEEEEEEcCCCEEEecCCEEEEEecCHHHHhcCCeEEEEcCCceEEEEeCCCCCCCCEEEECCCC
Confidence                                                                      5789999999999999999999


Q ss_pred             CCCCCCCCcccEEEEEEEecCC
Q 013183          317 NAGGRGRQHGNLFIKLKVADDP  338 (448)
Q Consensus       317 ~~~~~g~~~GDL~v~i~v~~h~  338 (448)
                      .+...+...|||||+|+|.-..
T Consensus       319 ~p~~~~~~~GdL~v~~~v~~P~  340 (378)
T PRK14283        319 MPSLRWSGKGNLYVKVKVVVPK  340 (378)
T ss_pred             CCCCCCCCCCCEEEEEEEEeCC
Confidence            9865455679999999998443

>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

Probab=99.09  E-value=6.8e-11  Score=118.51  Aligned_cols=69  Identities=33%  Similarity=0.654  Sum_probs=63.3

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-----ChhHHHHHHHHHHHHHHhhhhhhhhhhhhccc
Q 013183           81 KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKN-----NPSAKRKFQEIRDAYETLRDSEKRAQYDRRRS  149 (448)
Q Consensus        81 ~~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~-----~~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~  149 (448)
                      .-|||||||++.+++..|||++||+|..++||||.++     .++-+|++++|++||+.|+|...|..|-.||.
T Consensus        97 ~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGt  170 (610)
T COG5407          97 GFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGT  170 (610)
T ss_pred             CCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCC
Confidence            3599999999999999999999999999999999875     13578999999999999999999999999964

>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB

Probab=99.00  E-value=5.3e-10  Score=100.66  Aligned_cols=57  Identities=26%  Similarity=0.435  Sum_probs=48.9

Q ss_pred             CCCHHHHHHHHHHHHHHhCCCCCCCCh-----hHHHHHHHHHHHHHHhhhhhhhhhhhhccc
Q 013183           93 NASQDEIKKAFHMLAKQYHPDANKNNP-----SAKRKFQEIRDAYETLRDSEKRAQYDRRRS  149 (448)
Q Consensus        93 ~a~~~eIk~ayr~la~~~HPD~~~~~~-----~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~  149 (448)
                      +.+..+|+++|++|++++|||+..+.+     .+.+.|+.||+||++|+||.+|+.|+....
T Consensus         2 ~iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l~   63 (157)
T TIGR00714         2 QLDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSLH   63 (157)
T ss_pred             CCCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence            357889999999999999999965432     266889999999999999999999998643

This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.

>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.86  E-value=2.6e-09  Score=96.81  Aligned_cols=66  Identities=26%  Similarity=0.527  Sum_probs=59.5

Q ss_pred             CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hhHHHHHHHHHHHHHHhhhhhhhhhhh
Q 013183           80 SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNN-PSAKRKFQEIRDAYETLRDSEKRAQYD  145 (448)
Q Consensus        80 ~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~vL~d~~~R~~Yd  145 (448)
                      -.-|+|++|.|.++.+.++||+.||+|+...|||+|+++ +.|...|.-|.+||..|-|+..|..-+
T Consensus        51 fnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~~  117 (250)
T KOG1150|consen   51 FNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRCL  117 (250)
T ss_pred             cccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence            356999999999999999999999999999999999988 568899999999999999998655443

>PRK14299 chaperone protein DnaJ; Provisional

Probab=98.72  E-value=4e-08  Score=97.43  Aligned_cols=69  Identities=33%  Similarity=0.579  Sum_probs=61.8

Q ss_pred             cccCCCceEEEeecCHHHHhcCCEEEEeCCCC-eEEEEeCCCCCCCcEEEEcCCCCCCCCCCCCCCcEEEEEEEECCC
Q 013183          340 FSRDGADVYVDSNISFTQAILGGKVDVPTLSG-KVQVKIPKGVQPGQLLVLRGKGLAKNGLFLDHGDQYVRFRVNFPT  416 (448)
Q Consensus       340 f~R~G~DL~~~~~I~l~eAl~G~~~~i~tldG-~~~v~ip~g~~~g~~~~l~g~G~p~~~~~~~~GDL~V~~~V~~P~  416 (448)
                      +.|+|.||++++.|+|.||++|++++| +++| .++|+||+|+++|++++++|+|++.       |||||+|+|.-+.
T Consensus       125 ~~~~g~dl~~~l~isL~ea~~G~~~~i-~l~g~~~~V~Ip~G~~~G~~ir~~g~G~~~-------GDL~v~i~v~~h~  194 (291)
T PRK14299        125 RARKGRDLEAELPLTLEEAYRGGEKVV-EVAGERLSVRIPPGVREGQVIRLAGKGRQG-------GDLYLVVRLLPHP  194 (291)
T ss_pred             CCCCCCCEEEEEEecHHHHhCCCeEEE-eeCCEEEEEecCCCcCCCcEEEECCCCCCC-------CCEEEEEEEcCCC
Confidence            357899999999999999999999999 5677 4899999999999999999999862       9999999988654

>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

Probab=98.67  E-value=1.8e-08  Score=95.27  Aligned_cols=70  Identities=36%  Similarity=0.480  Sum_probs=61.0

Q ss_pred             CCCCCcccccCCCC---CCCHHHHHHHHHHHHHHhCCCCC--CCChhHHHHHHHHHHHHHHhhhhhhhhhhhhcc
Q 013183           79 SSKRDPYELLGVPE---NASQDEIKKAFHMLAKQYHPDAN--KNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRR  148 (448)
Q Consensus        79 ~~~~~~y~iLgv~~---~a~~~eIk~ayr~la~~~HPD~~--~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~  148 (448)
                      ....|+|.+|||+.   .|++.+|.+|.++.+.+||||+.  +++-...+.|+.|+.||+||+|+.+|..||..-
T Consensus        40 Wk~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~d  114 (379)
T COG5269          40 WKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSND  114 (379)
T ss_pred             hhhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhccccc
Confidence            44589999999987   68899999999999999999997  223345789999999999999999999999853

>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress

Probab=98.62  E-value=8.4e-08  Score=76.75  Aligned_cols=47  Identities=28%  Similarity=0.581  Sum_probs=36.3

Q ss_pred             EEEEEEecCCCCCCCEEEECCCCCCCCCCC-CcccEEEEEEEecCCCc
Q 013183          294 KEVKVTIPAGVDSGDTIRVPEAGNAGGRGR-QHGNLFIKLKVADDPIF  340 (448)
Q Consensus       294 ~~l~V~IppG~~~G~~i~~~g~G~~~~~g~-~~GDL~v~i~v~~h~~f  340 (448)
                      ++++|.||+|+++|+.++++|+|.+...+. ..|||+|+++|.-...+
T Consensus        27 ~~~~i~ip~~~~~g~~~~i~g~G~p~~~~~~~~GdL~v~~~V~~P~~l   74 (81)
T PF01556_consen   27 KTIKIKIPPGTQPGQQLRIKGKGMPKPKGGGKRGDLIVKFEVEFPKKL   74 (81)
T ss_dssp             -EEEEEETST-STT-EEEETTESEEESSSTTSBEEEEEEEEEE--SST
T ss_pred             CEEEEeccCccCCCcEEeecCCCCCcCCCCCCcCCEEEEEEEECCCCC
Confidence            478899999999999999999999765555 79999999999844333

The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....

>PRK10266 curved DNA-binding protein CbpA; Provisional

Probab=98.60  E-value=1.4e-07  Score=94.20  Aligned_cols=73  Identities=26%  Similarity=0.511  Sum_probs=60.7

Q ss_pred             cCCCceEEEeecCHHHHhcCCEEEE----eCCC--C--------eEEEEeCCCCCCCcEEEEcCCCCCCCCCCCCCCcEE
Q 013183          342 RDGADVYVDSNISFTQAILGGKVDV----PTLS--G--------KVQVKIPKGVQPGQLLVLRGKGLAKNGLFLDHGDQY  407 (448)
Q Consensus       342 R~G~DL~~~~~I~l~eAl~G~~~~i----~tld--G--------~~~v~ip~g~~~g~~~~l~g~G~p~~~~~~~~GDL~  407 (448)
                      ++|.||++.+.|+|.|++.|+.++|    ++.+  |        .++|+||+|+++|++++++|+|+|..+. ..+||||
T Consensus       115 ~kg~di~~~v~isLee~~~G~~k~i~~~~~~~~g~G~~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~-~~~GDl~  193 (306)
T PRK10266        115 ARGHDIEIEVAVFLEETLTEHKRTISYNLPVYNAFGMIEQEIPKTLNVKIPAGVGNGQRIRLKGQGTPGENG-GPNGDLW  193 (306)
T ss_pred             CCCCceEEEEEEEHHHhcCCceEEEEEecccccCCCeEEEeeeEEEEEEECCCCcCCcEEEEecCCcCCCCC-CCCccEE
Confidence            5689999999999999999996555    4443  3        3689999999999999999999996532 2469999


Q ss_pred             EEEEEECCC
Q 013183          408 VRFRVNFPT  416 (448)
Q Consensus       408 V~~~V~~P~  416 (448)
                      |+|+|. |.
T Consensus       194 v~i~v~-ph  201 (306)
T PRK10266        194 LVIHIA-PH  201 (306)
T ss_pred             EEEEEc-CC
Confidence            999998 65

>PLN03165 chaperone protein dnaJ-related; Provisional

Probab=98.38  E-value=2.8e-07  Score=77.47  Aligned_cols=56  Identities=39%  Similarity=0.907  Sum_probs=46.2

Q ss_pred             eeeeCCCCCCCCccCCCccccCCCccceeEEEeC-----CccccCCCcCCceEEeeecceeecCCcEEec
Q 013183          228 AFVPCDSCHGRGFPADAKTKICSTCRGIGRVTIP-----PFTSTCSTCKGLGRIIKDHCMTCKGSGVVDG  292 (448)
Q Consensus       228 ~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~-----~~~~~C~~C~G~G~~~~~~C~~C~g~G~~~~  292 (448)
                      ..+.|..|+|+|.      .+|+.|+|+|.+...     +++.+|+.|+|+|+.   .|..|+|.|++..
T Consensus        40 ~~v~C~~C~GsG~------~~C~~C~G~G~v~~~~~g~~q~~~~C~~C~G~Gk~---~C~~C~G~G~~~~  100 (111)
T PLN03165         40 NTQPCFPCSGTGA------QVCRFCVGSGNVTVELGGGEKEVSKCINCDGAGSL---TCTTCQGSGIQPR  100 (111)
T ss_pred             cCCCCCCCCCCCC------cCCCCCcCcCeEEEEeCCcEEEEEECCCCCCccee---eCCCCCCCEEEee
Confidence            4578999999997      389999999987542     236799999999975   4999999998654

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.31  E-value=7.1e-07  Score=97.50  Aligned_cols=57  Identities=30%  Similarity=0.483  Sum_probs=48.1

Q ss_pred             CCCCCCCcccccCCCCC----CCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhh
Q 013183           77 CYSSKRDPYELLGVPEN----ASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLR  136 (448)
Q Consensus        77 ~~~~~~~~y~iLgv~~~----a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~  136 (448)
                      ..++..+.|+||.++-+    -..+.||++|++||.+||||||+   +..++|..+|+|||.|+
T Consensus      1276 ~~mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNP---EGRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1276 ATMSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNP---EGREMFERVNKAYELLS 1336 (2235)
T ss_pred             CccchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCc---hHHHHHHHHHHHHHHHH
Confidence            34556789999998763    23478999999999999999985   56899999999999999

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.27  E-value=1.5e-06  Score=86.42  Aligned_cols=43  Identities=33%  Similarity=0.449  Sum_probs=38.1

Q ss_pred             EEEEEecCC--CCCCCEEEECCCCCCCCCCCCcccEEEEEEEecCC
Q 013183          295 EVKVTIPAG--VDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDP  338 (448)
Q Consensus       295 ~l~V~IppG--~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~  338 (448)
                      .+++.++||  +.+|++.+++|+|++..... .|||||.++|+-.+
T Consensus       280 ~l~~~~~pg~vi~~~~~~~v~~~gmp~~~~~-~g~lyi~~~v~fp~  324 (337)
T KOG0712|consen  280 LLKLSSKPGEVISPGDTKRVEGEGMPIFRNP-KGDLYIKFEVKFPK  324 (337)
T ss_pred             eEEEecCCCceeChhHEEeecCCCcccccCC-CCcEEEEEEEEcCC
Confidence            788999999  99999999999999987655 99999999998443

>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.25  E-value=9.9e-07  Score=81.88  Aligned_cols=57  Identities=37%  Similarity=0.675  Sum_probs=50.7

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHH-Hhhhh
Q 013183           81 KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYE-TLRDS  138 (448)
Q Consensus        81 ~~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~-vL~d~  138 (448)
                      -+.+|.+|||..+|+.+|++.||..||+++|||...+ ....++|.+|.+||. ||+..
T Consensus        46 ~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~-~adaa~f~qideafrkvlq~~  103 (342)
T KOG0568|consen   46 IMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSE-EADAARFIQIDEAFRKVLQEK  103 (342)
T ss_pred             HHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCc-cccHHHHHHHHHHHHHHHHHH
Confidence            4689999999999999999999999999999998864 445679999999998 88754

>TIGR02642 phage_xxxx uncharacterized phage protein

Probab=98.11  E-value=2.7e-06  Score=78.12  Aligned_cols=49  Identities=35%  Similarity=0.659  Sum_probs=41.6

Q ss_pred             cccCCCcCCceEEee--ecceeecCCcEEeceEEEEEEecCCCCCCCEEEEC
Q 013183          264 TSTCSTCKGLGRIIK--DHCMTCKGSGVVDGVKEVKVTIPAGVDSGDTIRVP  313 (448)
Q Consensus       264 ~~~C~~C~G~G~~~~--~~C~~C~g~G~~~~~~~l~V~IppG~~~G~~i~~~  313 (448)
                      +.+|+.|+|+|++++  .+|++|+|.|.+..++++.+.+ .|+.+|++|++.
T Consensus        99 ~~~C~~C~G~G~~i~~~~~C~~C~G~G~v~~~~~~~~k~-~g~~~g~~it~~  149 (186)
T TIGR02642        99 SCKCPRCRGTGLIQRRQRECDTCAGTGRFRPTVEDLLKS-FGVDSGAAIVLK  149 (186)
T ss_pred             CCcCCCCCCeeEEecCCCCCCCCCCccEEeeeEEEEEEe-eeccCCceeeHH
Confidence            346777777777776  6799999999999999999999 999999999875

This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.

>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ

Probab=97.81  E-value=8e-05  Score=80.64  Aligned_cols=70  Identities=50%  Similarity=0.816  Sum_probs=65.3

Q ss_pred             CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhcccCCC
Q 013183           82 RDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGS  152 (448)
Q Consensus        82 ~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~g~  152 (448)
                      .|||++|||+++|+.++||+|||+||++||||++++ +.+.++|++|++||++|+||.+|+.||.++..+.
T Consensus         2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~-~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG~   71 (871)
T TIGR03835         2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKA-PDAASIFAEINEANDVLSNPKKRANYDKYGHDGV   71 (871)
T ss_pred             CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHhCCHHHHHHHhhhccccc
Confidence            599999999999999999999999999999999975 7788999999999999999999999999876553

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.

>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.69  E-value=5.7e-05  Score=62.17  Aligned_cols=61  Identities=26%  Similarity=0.346  Sum_probs=49.8

Q ss_pred             cCCCCCCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhh
Q 013183           74 TGSCYSSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDS  138 (448)
Q Consensus        74 ~~~~~~~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~  138 (448)
                      ...+.+..+..-.||||+++++.+.||+|+|++....|||+.+. |--   =.+||||+++|...
T Consensus        48 GF~~kMsr~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGS-PYl---AsKINEAKdlLe~~  108 (112)
T KOG0723|consen   48 GFEPKMSRREAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGS-PYL---ASKINEAKDLLEGT  108 (112)
T ss_pred             ccccccchHHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCC-HHH---HHHHHHHHHHHhcc
Confidence            33445667788899999999999999999999999999999875 422   23599999999753

>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=97.63  E-value=6.2e-05  Score=66.17  Aligned_cols=69  Identities=26%  Similarity=0.456  Sum_probs=54.8

Q ss_pred             CCCCCcccccCCCC--CCCHHHHHHHHHHHHHHhCCCCCCCCh-----hHHHHHHHHHHHHHHhhhhhhhhhhhhc
Q 013183           79 SSKRDPYELLGVPE--NASQDEIKKAFHMLAKQYHPDANKNNP-----SAKRKFQEIRDAYETLRDSEKRAQYDRR  147 (448)
Q Consensus        79 ~~~~~~y~iLgv~~--~a~~~eIk~ayr~la~~~HPD~~~~~~-----~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~  147 (448)
                      ....+||.+||...  ...+.-++.-|.-..+++|||+.....     .|.+...++|+||.+|.||.+|+.|=.-
T Consensus         5 ~~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yilk   80 (168)
T KOG3192|consen    5 GSPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLLK   80 (168)
T ss_pred             chHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            34568999997654  456666777899999999999854321     3677899999999999999999999653

>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]

Probab=97.44  E-value=8.3e-05  Score=77.77  Aligned_cols=59  Identities=32%  Similarity=0.769  Sum_probs=31.1

Q ss_pred             eCCCCCCCCccCCCccccCCCccceeEEEeC-----------------CccccCCCcCCceEEe-eecceeecCCcEE
Q 013183          231 PCDSCHGRGFPADAKTKICSTCRGIGRVTIP-----------------PFTSTCSTCKGLGRII-KDHCMTCKGSGVV  290 (448)
Q Consensus       231 ~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~-----------------~~~~~C~~C~G~G~~~-~~~C~~C~g~G~~  290 (448)
                      .|+.|.|+|... .....|+.|+|+|.....                 .+..+|..|+|+|.+. -..|..|.|.|.+
T Consensus         4 ~C~~C~g~G~i~-v~~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v~~~c~~c~G~gkv   80 (715)
T COG1107           4 KCPECGGKGKIV-VGEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTVYDTCPECGGTGKV   80 (715)
T ss_pred             cccccCCCceEe-eeeeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEEEeecccCCCceeE
Confidence            466666666532 223456666666653100                 1134666666666654 3566666666543

>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation

Probab=97.32  E-value=0.00012  Score=56.11  Aligned_cols=44  Identities=32%  Similarity=0.778  Sum_probs=31.6

Q ss_pred             eeeeCCCCCCCCccCCC---------ccccCCCccceeEEEeCCccccCCCcCCce
Q 013183          228 AFVPCDSCHGRGFPADA---------KTKICSTCRGIGRVTIPPFTSTCSTCKGLG  274 (448)
Q Consensus       228 ~~~~C~~C~G~G~~~~~---------~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G  274 (448)
                      ....|+.|+|+|.....         ....|+.|+|+|.++   ...+|+.|+|.|
T Consensus        14 ~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i---~~~~C~~C~G~g   66 (66)
T PF00684_consen   14 KPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKII---EKDPCKTCKGSG   66 (66)
T ss_dssp             T-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE----TSSB-SSSTTSS
T ss_pred             CCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEE---CCCCCCCCCCcC
Confidence            34689999999986432         356999999999983   268999999986

DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=96.44  E-value=0.0027  Score=58.27  Aligned_cols=69  Identities=32%  Similarity=0.526  Sum_probs=53.7

Q ss_pred             CcccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCChh-----HHHHHHHHHHHHHHhhhhhhhhhhhhcccCC
Q 013183           83 DPYELLGVPENA--SQDEIKKAFHMLAKQYHPDANKNNPS-----AKRKFQEIRDAYETLRDSEKRAQYDRRRSRG  151 (448)
Q Consensus        83 ~~y~iLgv~~~a--~~~eIk~ayr~la~~~HPD~~~~~~~-----a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~g  151 (448)
                      +++..+|..+.+  ..+.++..|+.+++.+|||+....+.     +.+.+..++.||.+|.||.+|+.|=.....|
T Consensus         2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~lal~~g   77 (174)
T COG1076           2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLALADG   77 (174)
T ss_pred             CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccc
Confidence            455566666643  44568999999999999999876543     3457889999999999999999997764433

>PLN03165 chaperone protein dnaJ-related; Provisional

Probab=96.43  E-value=0.0021  Score=54.29  Aligned_cols=41  Identities=34%  Similarity=0.764  Sum_probs=32.3

Q ss_pred             eCCCCCCCCccCC------CccccCCCccceeEEEeCCccccCCCcCCceEEee
Q 013183          231 PCDSCHGRGFPAD------AKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIK  278 (448)
Q Consensus       231 ~C~~C~G~G~~~~------~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~  278 (448)
                      .|+.|+|+|....      .....|+.|+|.|..       .|..|.|+|.+.+
T Consensus        54 ~C~~C~G~G~v~~~~~g~~q~~~~C~~C~G~Gk~-------~C~~C~G~G~~~~  100 (111)
T PLN03165         54 VCRFCVGSGNVTVELGGGEKEVSKCINCDGAGSL-------TCTTCQGSGIQPR  100 (111)
T ss_pred             CCCCCcCcCeEEEEeCCcEEEEEECCCCCCccee-------eCCCCCCCEEEee
Confidence            7999999987532      125689999999974       4999999998754

>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]

Probab=96.18  E-value=0.0049  Score=60.30  Aligned_cols=61  Identities=33%  Similarity=0.738  Sum_probs=34.8

Q ss_pred             eeeCCCCCCCCccC--CCccccCCCccc-----------------eeEEEeCCccccCCCcCCceEEeeecceeecCCcE
Q 013183          229 FVPCDSCHGRGFPA--DAKTKICSTCRG-----------------IGRVTIPPFTSTCSTCKGLGRIIKDHCMTCKGSGV  289 (448)
Q Consensus       229 ~~~C~~C~G~G~~~--~~~~~~C~~C~G-----------------~G~~~~~~~~~~C~~C~G~G~~~~~~C~~C~g~G~  289 (448)
                      ...|+.|+|.|...  ..+...|+.|-|                 +|..       .|++|.|.|.   .+|.+|.|.|.
T Consensus       198 ~~vc~gc~g~G~~~y~~~~~m~c~sc~G~~~~k~gt~~~C~~C~G~G~~-------~C~tC~grG~---k~C~TC~gtgs  267 (406)
T KOG2813|consen  198 AMVCHGCSGSGSNSYGIGTPMHCMSCTGVPPPKIGTHDLCYMCHGRGIK-------ECHTCKGRGK---KPCTTCSGTGS  267 (406)
T ss_pred             ceeccCcCCCCccccccCcceecccccCCCCCCCCccchhhhccCCCcc-------cCCcccCCCC---cccccccCccc
Confidence            45788888887421  122344554444                 4432       4555555553   57888888877


Q ss_pred             EeceEEEEEE
Q 013183          290 VDGVKEVKVT  299 (448)
Q Consensus       290 ~~~~~~l~V~  299 (448)
                      +..-..+.|.
T Consensus       268 ll~~t~~vV~  277 (406)
T KOG2813|consen  268 LLNYTRIVVY  277 (406)
T ss_pred             eeeeEEEEEE
Confidence            6655444443

>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]

Probab=96.16  E-value=0.0043  Score=65.30  Aligned_cols=46  Identities=41%  Similarity=0.928  Sum_probs=34.2

Q ss_pred             eeeCCCCCCCCccCCCc------------------cccCCCccceeEEEeCCccccCCCcCCceEEe
Q 013183          229 FVPCDSCHGRGFPADAK------------------TKICSTCRGIGRVTIPPFTSTCSTCKGLGRII  277 (448)
Q Consensus       229 ~~~C~~C~G~G~~~~~~------------------~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~  277 (448)
                      ...|+.|+|+|....-.                  -..|+.|+|.|.+.   ...+|+.|+|+|++.
T Consensus        18 ~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~---v~~~c~~c~G~gkv~   81 (715)
T COG1107          18 EEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVT---VYDTCPECGGTGKVL   81 (715)
T ss_pred             eeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEE---EEeecccCCCceeEE
Confidence            45699999998753211                  23799999999875   356899999999875

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=96.00  E-value=0.0038  Score=57.30  Aligned_cols=54  Identities=43%  Similarity=0.656  Sum_probs=46.4

Q ss_pred             CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC--h-----hHHHHHHHHHHHHHHh
Q 013183           82 RDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNN--P-----SAKRKFQEIRDAYETL  135 (448)
Q Consensus        82 ~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~--~-----~a~~~f~~i~~Ay~vL  135 (448)
                      .+.|.+|++...++..+|+++|+++..++|||+-...  +     .+.+++++|++||+.+
T Consensus       113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~  173 (174)
T COG1076         113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI  173 (174)
T ss_pred             hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence            6899999999999999999999999999999975321  2     3778899999999853

>TIGR02642 phage_xxxx uncharacterized phage protein

Probab=95.64  E-value=0.012  Score=54.31  Aligned_cols=30  Identities=37%  Similarity=0.812  Sum_probs=15.8

Q ss_pred             ccCCCccceeEEEeCCccccCCCcCCceEEee
Q 013183          247 KICSTCRGIGRVTIPPFTSTCSTCKGLGRIIK  278 (448)
Q Consensus       247 ~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~  278 (448)
                      ..|+.|+|+|.+...  ..+|+.|+|+|++..
T Consensus       100 ~~C~~C~G~G~~i~~--~~~C~~C~G~G~v~~  129 (186)
T TIGR02642       100 CKCPRCRGTGLIQRR--QRECDTCAGTGRFRP  129 (186)
T ss_pred             CcCCCCCCeeEEecC--CCCCCCCCCccEEee
Confidence            345555555554321  145666666666543

This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.

>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]

Probab=95.12  E-value=0.013  Score=57.54  Aligned_cols=53  Identities=36%  Similarity=0.818  Sum_probs=39.1

Q ss_pred             eeCCCCCCCCccCCCccccCCCccceeEEE------e--C----------CccccCCCcCCceEEeeecceeecCCcEEe
Q 013183          230 VPCDSCHGRGFPADAKTKICSTCRGIGRVT------I--P----------PFTSTCSTCKGLGRIIKDHCMTCKGSGVVD  291 (448)
Q Consensus       230 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~------~--~----------~~~~~C~~C~G~G~~~~~~C~~C~g~G~~~  291 (448)
                      ..|..|.|.|.      ..|+.|+|.|.-.      +  .          .....|..|+|+|+   ..|.+|+|.|...
T Consensus       188 ~~ch~c~gRG~------~vc~gc~g~G~~~y~~~~~m~c~sc~G~~~~k~gt~~~C~~C~G~G~---~~C~tC~grG~k~  258 (406)
T KOG2813|consen  188 TFCHACLGRGA------MVCHGCSGSGSNSYGIGTPMHCMSCTGVPPPKIGTHDLCYMCHGRGI---KECHTCKGRGKKP  258 (406)
T ss_pred             hhhhcccCCCc------eeccCcCCCCccccccCcceecccccCCCCCCCCccchhhhccCCCc---ccCCcccCCCCcc
Confidence            56999999984      6899999999421      0  0          01457899999986   5799999988643

>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]

Probab=94.93  E-value=0.027  Score=59.23  Aligned_cols=46  Identities=20%  Similarity=0.405  Sum_probs=35.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHHhCCCCCCCCh-------hHHHHHHHHHHHHHHh
Q 013183           90 VPENASQDEIKKAFHMLAKQYHPDANKNNP-------SAKRKFQEIRDAYETL  135 (448)
Q Consensus        90 v~~~a~~~eIk~ayr~la~~~HPD~~~~~~-------~a~~~f~~i~~Ay~vL  135 (448)
                      +..=.+.++|||+|||..+..||||-++.+       .+++.|..+++||+.-
T Consensus       396 ltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~f  448 (453)
T KOG0431|consen  396 LTDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNKF  448 (453)
T ss_pred             hhhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHhh
Confidence            344568999999999999999999987653       2566777777777643

>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []

Probab=92.48  E-value=0.34  Score=42.02  Aligned_cols=59  Identities=24%  Similarity=0.280  Sum_probs=40.7

Q ss_pred             CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhh
Q 013183           79 SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKR  141 (448)
Q Consensus        79 ~~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~R  141 (448)
                      +.-..-..||+|++.++.++|.+.|.+|-..-+|++.+.    .-.=.+|..|.|.|....+.
T Consensus        55 Mtl~EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGS----fYLQSKV~rAKErl~~El~~  113 (127)
T PF03656_consen   55 MTLDEARQILNVKEELSREEIQKRYKHLFKANDPSKGGS----FYLQSKVFRAKERLEQELKE  113 (127)
T ss_dssp             --HHHHHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS-----HHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCC----HHHHHHHHHHHHHHHHHHHH
Confidence            334567899999999999999999999999999998763    22223688899988765543

In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.

>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=88.93  E-value=0.34  Score=47.01  Aligned_cols=36  Identities=31%  Similarity=0.915  Sum_probs=20.4

Q ss_pred             cCCCccceeEEEeCCccccCCCcCCceEEee--------ecceeecCCcEE
Q 013183          248 ICSTCRGIGRVTIPPFTSTCSTCKGLGRIIK--------DHCMTCKGSGVV  290 (448)
Q Consensus       248 ~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~--------~~C~~C~g~G~~  290 (448)
                      .|..|+|.+.+       +|..|+|+-++..        .+|..|+-.|.+
T Consensus       231 ~C~~CGg~rFl-------pC~~C~GS~kv~~~~~~~~~~~rC~~CNENGLv  274 (281)
T KOG2824|consen  231 VCESCGGARFL-------PCSNCHGSCKVHEEEEDDGGVLRCLECNENGLV  274 (281)
T ss_pred             cCCCcCCcceE-------ecCCCCCceeeeeeccCCCcEEECcccCCCCce
Confidence            45555555554       4666666655543        456666655544

>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=86.62  E-value=0.75  Score=45.67  Aligned_cols=76  Identities=21%  Similarity=0.399  Sum_probs=46.2

Q ss_pred             eeeceeeeCCCCCCCCccCC-----CccccCCCccceeEEEeCCccccCCCcCCceEEeeecceeecCCcEEeceEEEEE
Q 013183          224 VSFDAFVPCDSCHGRGFPAD-----AKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKV  298 (448)
Q Consensus       224 i~~~~~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~C~~C~g~G~~~~~~~l~V  298 (448)
                      ........|..|.|.|....     ....+|..|+|.|.+..    ..|..|.|.|.+...+=..-..+..+....++++
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~c~~~~~~~~----~~c~~~~g~~~v~~~k~i~i~~~~g~~~~~~l~~  251 (288)
T KOG0715|consen  176 EEGAKRESCKTCSGRGLVSNPKEDPFILYTCSYCLGRGLVLR----DNCQACSGAGQVRRAKDIMIVLPAGVRSADTLRF  251 (288)
T ss_pred             ccccccccchhhhCcccccccccCCcceeecccccccceecc----chHHHhhcchhhhhheeEEeecCcccccccEEEE
Confidence            34456788999999993321     11237999999999843    3499999999654332222233333333344444


Q ss_pred             EecCC
Q 013183          299 TIPAG  303 (448)
Q Consensus       299 ~IppG  303 (448)
                      ..+..
T Consensus       252 ~~~~~  256 (288)
T KOG0715|consen  252 AGHGN  256 (288)
T ss_pred             ecCCc
Confidence            44443

>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs

Probab=84.31  E-value=0.83  Score=40.70  Aligned_cols=12  Identities=33%  Similarity=0.827  Sum_probs=7.7

Q ss_pred             ecceeecCCcEE
Q 013183          279 DHCMTCKGSGVV  290 (448)
Q Consensus       279 ~~C~~C~g~G~~  290 (448)
                      .+|+.|+-.|.+
T Consensus       134 ~rC~~Cnengl~  145 (147)
T cd03031         134 LRCPECNENGLV  145 (147)
T ss_pred             EECCCCCccccc
Confidence            467777766654

This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	448
3lz8_A	329	Structure Of A Putative Chaperone Dnaj From Klebsie		3e-19
2dn9_A	79	Solution Structure Of J-Domain From The Dnaj Homolo		2e-17
2ctr_A	88	Solution Structure Of J-Domain From Human Dnaj Subf		1e-14
1xbl_A	107	Nmr Structure Of The J-Domain (Residues 2-76) In Th		2e-14
1bq0_A	103	J-Domain (Residues 1-77) Of The Escherichia Coli N-		2e-14
1bqz_A	77	J-Domain (Residues 1-77) Of The Escherichia Coli N-		4e-14
1nlt_A	248	The Crystal Structure Of Hsp40 Ydj1 Length = 248		5e-13
2ctw_A	109	Solution Structure Of J-Domain From Mouse Dnaj Subf		2e-12
3apo_A	780	Crystal Structure Of Full-Length Erdj5 Length = 780		3e-12
2cug_A	88	Solution Structure Of The J Domain Of The Pseudo Dn		3e-12
3apq_A	210	Crystal Structure Of J-Trx1 Fragment Of Erdj5 Lengt		6e-12
2lgw_A	99	Solution Structure Of The J Domain Of Hsj1a Length		2e-11
2lo1_A	71	Nmr Structure Of The Protein Bc008182, A Dnaj-Like		3e-11
2dmx_A	92	Solution Structure Of The J Domain Of Dnaj Homolog		4e-11
2ej7_A	82	Solution Structure Of The Dnaj Domain Of The Human		4e-11
1hdj_A	77	Human Hsp40 (Hdj-1), Nmr Length = 77		2e-09
2kqx_A	73	Nmr Structure Of The J-Domain (Residues 2-72) In Th		2e-09
2ctp_A	78	Solution Structure Of J-Domain From Human Dnaj Subf		3e-09
2och_A	73	J-domain Of Dnj-12 From Caenorhabditis Elegans Leng		8e-09
2yua_A	99	Solution Structure Of The Dnaj Domain From Human Wi		1e-08
2ctq_A	112	Solution Structure Of J-Domain From Human Dnaj Subf		2e-07
2o37_A	92	J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From S		3e-07
3agz_A	190	Crystal Structure Of Human Hsp40 Hdj1 Peptide-Bindi		3e-07
2ctt_A	104	Solution Structure Of Zinc Finger Domain From Human		4e-07
3agx_A	181	Crystal Structure Of Human Hsp40 Hdj1 Peptide-Bindi		4e-07
2qld_A	183	Human Hsp40 Hdj1 Length = 183		4e-07
2y4t_A	450	Crystal Structure Of The Human Co-Chaperone P58(Ipk		2e-06
2y4u_A	450	Crystal Structure Of Human P58(Ipk) In Space Group		2e-06
1exk_A	79	Solution Structure Of The Cysteine-Rich Domain Of T		7e-06
2qsa_A	109	Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2		2e-05
3i38_A	109	Structure Of A Putative Chaperone Protein Dnaj From		7e-05
1wjz_A	94	Soluiotn Structure Of J-Domain Of Mouse Dnaj Like P		1e-04
2l6l_A	155	Solution Structure Of Human J-Protein Co-Chaperone,		5e-04

>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A Resolution. Length = 329

Iteration: 1
 Score = 92.8 bits (229), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 91/359 (25%), Positives = 149/359 (41%), Gaps = 70/359 (19%)
Query: 58  DFGTTGMFLARRCIHATGSCYSSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKN 117
           D GT  ++     +          +D Y +LGV        IK A+  LA++YHPD +K 
Sbjct: 12  DLGTENLYFQSNAMEL--------KDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKE 63
Query: 118 NPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYA 177
           N  A+ KF+++ +A+E L+D       ++RR+      +Y     + +++  D  GF   
Sbjct: 64  N-DAEAKFKDLAEAWEVLKD-------EQRRA------EYD----QLWQHRNDP-GFGRQ 104
Query: 178 YQTHFSDSFHKIFSEIFEDETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHG 237
            QTH      + F +IF   +S F    Q         AA+G    +    F+       
Sbjct: 105 RQTHEQSYSQQDFDDIF---SSMFG---QQAHQRRRQHAARGHDLEIEVAVFL------- 151
Query: 238 RGFPADAKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVK 297
                  +  +    R I    +P +                      G    +  K + 
Sbjct: 152 -------EETLAEQTRTIS-YNLPVYN-------------------VFGMIESETPKTLN 184
Query: 298 VTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQ 357
           V IPAGV  G  IR+   G  G  G  +G+L++ + +A  P+F   G ++ +   ++  +
Sbjct: 185 VKIPAGVVDGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGHNLEIVLPLAPWE 244
Query: 358 AILGGKVDVPTLSGKVQVKIPKGVQPGQLLVLRGKGLAKNGLFLDHGDQYVRFRVNFPT 416
           A LG KV VPTL   + + +P G Q GQ L ++GKGL         GD +   ++  PT
Sbjct: 245 AALGAKVTVPTLKESILLTVPPGSQAGQRLRIKGKGLVSK---THTGDLFAVIKIVMPT 300

>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog, Human Tid1 Protein Length = 79

Iteration: 1
 Score = 87.0 bits (214), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 39/63 (61%), Positives = 49/63 (77%)
Query: 83  DPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRA 142
           D Y++LGVP NASQ EIKKA++ LAK+YHPD NK++P AK KF ++ +AYE L D  KR 
Sbjct: 8   DYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRK 67
Query: 143 QYD 145
           QYD
Sbjct: 68  QYD 70

>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 9 Length = 88

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 36/61 (59%), Positives = 50/61 (81%), Gaps = 1/61 (1%)
Query: 85  YELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQY 144
           Y++LGVP++AS+ +IKKAFH LA +YHPD NK +P A+ KF+EI +AYETL D+ +R +Y
Sbjct: 10  YDILGVPKSASERQIKKAFHKLAMKYHPDKNK-SPDAEAKFREIAEAYETLSDANRRKEY 68
Query: 145 D 145
           D
Sbjct: 69  D 69

>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The Escherichia Coli N-Terminal Fragment (Residues 2-108) Of The Molecular Chaperone Dnaj, 20 Structures Length = 107

Iteration: 1
 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 35/67 (52%), Positives = 51/67 (76%)
Query: 80  SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSE 139
           +K+D YE+LGV + A + EI+KA+  LA +YHPD N+ +  A+ KF+EI++AYE L DS+
Sbjct: 1   AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQ 60
Query: 140 KRAQYDR 146
           KRA YD+
Sbjct: 61  KRAAYDQ 67

>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-104) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 103

Iteration: 1
 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 35/67 (52%), Positives = 51/67 (76%)
Query: 80  SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSE 139
           +K+D YE+LGV + A + EI+KA+  LA +YHPD N+ +  A+ KF+EI++AYE L DS+
Sbjct: 1   AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQ 60
Query: 140 KRAQYDR 146
           KRA YD+
Sbjct: 61  KRAAYDQ 67

>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-78) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 77

Iteration: 1
 Score = 75.9 bits (185), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 35/67 (52%), Positives = 51/67 (76%)
Query: 80  SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSE 139
           +K+D YE+LGV + A + EI+KA+  LA +YHPD N+ +  A+ KF+EI++AYE L DS+
Sbjct: 1   AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQ 60
Query: 140 KRAQYDR 146
           KRA YD+
Sbjct: 61  KRAAYDQ 67

>pdb|1NLT|A Chain A, The Crystal Structure Of Hsp40 Ydj1 Length = 248

Iteration: 1
 Score = 72.4 bits (176), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 104/227 (45%), Gaps = 20/227 (8%)
Query: 204 DIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTC--RGIGRVT-- 259
           DI+ E+  S  E  KG T  ++ +  + C  C GRG    A  K C++C  +GI  VT  
Sbjct: 13  DIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGA-VKKCTSCNGQGIKFVTRQ 71
Query: 260 ----IPPFTSTCSTCKGLGRII--KDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDTIRVP 313
               I  F + C  C G G II  KD C +C G  V +  K ++V +  G+  G  I   
Sbjct: 72  MGPMIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVENERKILEVHVEPGMKDGQRIVFK 131
Query: 314 EAGNAGGRGRQHGNLFIKLKVADDP--IFSRDGADVYVDSNISFTQAILGGKVDVPTLSG 371
              +          +FI   V++ P   F RDG D+  ++ I    AI GG+  +  +SG
Sbjct: 132 GEADQAPDVIPGDVVFI---VSERPHKSFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSG 188
Query: 372 ---KVQVKIPKGVQPGQLLVLRGKGLAKNGLFLDHGDQYVRFRVNFP 415
              KV +   + + PG   V+ GKG+     +  +G+  ++F +  P
Sbjct: 189 DWLKVGIVPGEVIAPGMRKVIEGKGMPIP-KYGGYGNLIIKFTIKDP 234

>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C Menber 5 Length = 109

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/76 (44%), Positives = 49/76 (64%)
Query: 76  SCYSSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETL 135
           S  +S    Y +LG+ +NA+ D+IKK++  LA +YHPD N +NP A  KF+EI +A+  L
Sbjct: 11  SLSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAIL 70
Query: 136 RDSEKRAQYDRRRSRG 151
            D+ KR  YD+  S G
Sbjct: 71  TDATKRNIYDKYGSLG 86

>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5 Length = 780

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 36/83 (43%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
Query: 85  YELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQY 144
           Y LLGV + AS  EI++AF  LA + HPD N NNP+A   F +I  AYE L+D + R +Y
Sbjct: 24  YSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKY 83
Query: 145 DRRRSRGSENEKYSAGDAEGFRY 167
           D+   +G E+ +   G  E + Y
Sbjct: 84  DKYGEKGLEDNQ--GGQYESWSY 104

>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj Protein, Mouse Hypothetical Mkiaa0962 Length = 88

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 33/63 (52%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Query: 83  DPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRA 142
           DPY +LGV   ASQ +IKKA+  LA+++HPD NK +P A+ +F +I  AYE L + EKR 
Sbjct: 18  DPYRVLGVSRTASQADIKKAYKKLAREWHPDKNK-DPGAEDRFIQISKAYEILSNEEKRT 76
Query: 143 QYD 145
            YD
Sbjct: 77  NYD 79

>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5 Length = 210

Iteration: 1
 Score = 68.6 bits (166), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 36/83 (43%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
Query: 85  YELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQY 144
           Y LLGV + AS  EI++AF  LA + HPD N NNP+A   F +I  AYE L+D + R +Y
Sbjct: 5   YSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKY 64
Query: 145 DRRRSRGSENEKYSAGDAEGFRY 167
           D+   +G E+ +   G  E + Y
Sbjct: 65  DKYGEKGLEDNQ--GGQYESWSY 85

>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a Length = 99

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/63 (52%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Query: 85  YELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPS-AKRKFQEIRDAYETLRDSEKRAQ 143
           YE+L VP +AS D+IKKA+   A Q+HPD N +N   A++KF+E+ +AYE L D  KR  
Sbjct: 5   YEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREI 64
Query: 144 YDR 146
           YDR
Sbjct: 65  YDR 67

>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain From Homo Sapiens Length = 71

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/62 (50%), Positives = 44/62 (70%), Gaps = 3/62 (4%)
Query: 85  YELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQY 144
           Y++LGV  NA+Q+E+KKA+  LA +YHPD    NP+   KF++I  AYE L D++KR  Y
Sbjct: 9   YDVLGVKPNATQEELKKAYRKLALKYHPD---KNPNEGEKFKQISQAYEVLSDAKKRELY 65
Query: 145 DR 146
           D+
Sbjct: 66  DK 67

>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog Subfamily B Member 8 Length = 92

Iteration: 1
 Score = 65.9 bits (159), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/63 (50%), Positives = 47/63 (74%), Gaps = 1/63 (1%)
Query: 85  YELLGVPENASQDEIKKAFHMLAKQYHPDANKNNP-SAKRKFQEIRDAYETLRDSEKRAQ 143
           YE+LGV  +AS ++IKKA+  LA ++HPD N +N   A++KF+ + +AYE L DS+KR+ 
Sbjct: 12  YEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSL 71
Query: 144 YDR 146
           YDR
Sbjct: 72  YDR 74

>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein Hcg3, A Hypothetical Protein Tmp_locus_21 Length = 82

Iteration: 1
 Score = 65.9 bits (159), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/65 (49%), Positives = 46/65 (70%), Gaps = 1/65 (1%)
Query: 83  DPYELLGVPENASQDEIKKAFHMLAKQYHPDAN-KNNPSAKRKFQEIRDAYETLRDSEKR 141
           D YE+L VP  AS + IKKA+  LA ++HPD N +N   A+R+F+++ +AYE L D++KR
Sbjct: 10  DYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKR 69
Query: 142 AQYDR 146
             YDR
Sbjct: 70  DIYDR 74

>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr Length = 77

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 82  RDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKR 141
           +D Y+ LG+   AS +EIK+A+   A +YHPD NK  P A+ KF+EI +AY+ L D  KR
Sbjct: 3   KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNK-EPGAEEKFKEIAEAYDVLSDPRKR 61
Query: 142 AQYDR 146
             +DR
Sbjct: 62  EIFDR 66

>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The Escherichia Coli Cbpa Length = 73

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/68 (39%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 79  SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDS 138
           S  +D Y ++GV        IK A+  LA++YHPD +K  P A+ +F+E+ +A+E L D 
Sbjct: 2   SELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSK-EPDAEARFKEVAEAWEVLSDE 60
Query: 139 EKRAQYDR 146
           ++RA+YD+
Sbjct: 61  QRRAEYDQ 68

>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 12 Length = 78

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/67 (46%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 80  SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSE 139
           S  D YE+LGV   AS +++KKA+  LA ++HPD N + P A   F+ I  AY  L + E
Sbjct: 5   SSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKN-HAPGATEAFKAIGTAYAVLSNPE 63
Query: 140 KRAQYDR 146
           KR QYD+
Sbjct: 64  KRKQYDQ 70

>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans Length = 73

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 27/62 (43%), Positives = 41/62 (66%), Gaps = 3/62 (4%)
Query: 85  YELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQY 144
           Y++LGV  +AS +E+KKA+  +A ++HPD    NP    +F++I  AYE L D +KR  Y
Sbjct: 11  YDVLGVKPDASDNELKKAYRKMALKFHPD---KNPDGAEQFKQISQAYEVLSDEKKRQIY 67
Query: 145 DR 146
           D+
Sbjct: 68  DQ 69

>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human Williams- Beuren Syndrome Chromosome Region 18 Protein Length = 99

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 39/72 (54%)
Query: 75  GSCYSSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYET 134
           G C  S+   Y+LLGVP  A+Q +IK A++     YHPD N  +  A  +F  I  AY  
Sbjct: 10  GDCSYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVV 69
Query: 135 LRDSEKRAQYDR 146
           L  +  R +YDR
Sbjct: 70  LGSATLRRKYDR 81

>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily C Menber 12 Length = 112

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 83  DPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRA 142
           D Y LLG  E +S ++I   F + A + HPD +  NP A   FQ+++ A E L + E RA
Sbjct: 21  DYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRA 80
Query: 143 QYDR-RRSRGS 152
           +YD  RRS+ S
Sbjct: 81  RYDHWRRSQMS 91

>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From Saccharomyces Cerevisiae Length = 92

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/62 (41%), Positives = 39/62 (62%), Gaps = 3/62 (4%)
Query: 85  YELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQY 144
           Y+LLGV  +A++ E+KK +   A +YHPD    +     KF+EI +A+E L D +KR  Y
Sbjct: 11  YDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD---TEKFKEISEAFEILNDPQKREIY 67
Query: 145 DR 146
           D+
Sbjct: 68  DQ 69

>pdb|3AGZ|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding Domain Complexed With A C-Terminal Peptide Of Hsp70 Length = 190

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 60/131 (45%), Gaps = 2/131 (1%)
Query: 286 GSGVVDGVKEVKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGA 345
           G  + +  K + + +  G   G  I  P+ G+          +F+ LK     IF RDG+
Sbjct: 44  GKSIRNEDKILTIEVKKGWKEGTKITFPKEGDQTSNNIPADIVFV-LKDKPHNIFKRDGS 102
Query: 346 DVYVDSNISFTQAILGGKVDVPTLSGK-VQVKIPKGVQPGQLLVLRGKGLAKNGLFLDHG 404
           DV   + IS  +A+ G  V+VPTL G+ + V     ++PG    + G+GL         G
Sbjct: 103 DVIYPARISLREALCGCTVNVPTLDGRTIPVVFKDVIRPGMRRKVPGEGLPLPKTPEKRG 162
Query: 405 DQYVRFRVNFP 415
           D  + F V FP
Sbjct: 163 DLIIEFEVIFP 173

>pdb|2CTT|A Chain A, Solution Structure Of Zinc Finger Domain From Human Dnaj Subfamily A Menber 3 Length = 104

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 209 LVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGIGRVTIP--PFT-- 264
           + L+F +AAKG  K  + +    C+ C+G+G     K + C  C G G  TI   PF   
Sbjct: 8   MELTFNQAAKGVNKEFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSGMETINTGPFVMR 67
Query: 265 STCSTCKGLGRIIKDHCMTCKGSG 288
           STC  C G G II   C+ C+G+G
Sbjct: 68  STCRRCGGRGSIIISPCVVCRGAG 91

>pdb|3AGX|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding Domain Length = 181

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 60/131 (45%), Gaps = 2/131 (1%)
Query: 286 GSGVVDGVKEVKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGA 345
           G  + +  K + + +  G   G  I  P+ G+          +F+ LK     IF RDG+
Sbjct: 35  GKSIRNEDKILTIEVKKGWKEGTKITFPKEGDQTSNNIPADIVFV-LKDKPHNIFKRDGS 93
Query: 346 DVYVDSNISFTQAILGGKVDVPTLSGK-VQVKIPKGVQPGQLLVLRGKGLAKNGLFLDHG 404
           DV   + IS  +A+ G  V+VPTL G+ + V     ++PG    + G+GL         G
Sbjct: 94  DVIYPARISLREALCGCTVNVPTLDGRTIPVVFKDVIRPGMRRKVPGEGLPLPKTPEKRG 153
Query: 405 DQYVRFRVNFP 415
           D  + F V FP
Sbjct: 154 DLIIEFEVIFP 164

>pdb|2QLD|A Chain A, Human Hsp40 Hdj1 Length = 183

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 60/131 (45%), Gaps = 2/131 (1%)
Query: 286 GSGVVDGVKEVKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGA 345
           G  + +  K + + +  G   G  I  P+ G+          +F+ LK     IF RDG+
Sbjct: 37  GKSIRNEDKILTIEVKKGWKEGTKITFPKEGDQTSNNIPADIVFV-LKDKPHNIFKRDGS 95
Query: 346 DVYVDSNISFTQAILGGKVDVPTLSGK-VQVKIPKGVQPGQLLVLRGKGLAKNGLFLDHG 404
           DV   + IS  +A+ G  V+VPTL G+ + V     ++PG    + G+GL         G
Sbjct: 96  DVIYPARISLREALCGCTVNVPTLDGRTIPVVFKDVIRPGMRRKVPGEGLPLPKTPEKRG 155
Query: 405 DQYVRFRVNFP 415
           D  + F V FP
Sbjct: 156 DLIIEFEVIFP 166

>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk) Length = 450

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/70 (45%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 79  SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKN---NPSAKRKFQEIRDAYETL 135
           S KRD Y++LGV  NA + EI KA+  LA Q+HPD  +N      A++KF +I  A E L
Sbjct: 379 SQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVL 438
Query: 136 RDSEKRAQYD 145
            D E R ++D
Sbjct: 439 SDPEMRKKFD 448

>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312 Length = 450

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/70 (45%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 79  SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKN---NPSAKRKFQEIRDAYETL 135
           S KRD Y++LGV  NA + EI KA+  LA Q+HPD  +N      A++KF +I  A E L
Sbjct: 379 SQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVL 438
Query: 136 RDSEKRAQYD 145
            D E R ++D
Sbjct: 439 SDPEXRKKFD 448

>pdb|1EXK|A Chain A, Solution Structure Of The Cysteine-Rich Domain Of The Escherichia Coli Chaperone Protein Dnaj Length = 79

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Query: 221 TKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGIGRVTIP----PFTSTCSTCKGLGRI 276
           TK +       CD CHG G     + + C TC G G+V +         TC  C+G G +
Sbjct: 3   TKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTL 62
Query: 277 IKDHCMTCKGSGVVD 291
           IKD C  C G G V+
Sbjct: 63  IKDPCNKCHGHGRVE 77

>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2 Precursor From C.Elegans Length = 109

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Query: 78  YSSKRDPYELLGVP-ENASQDEIKKAFHMLAKQYHPDANKNNPS---AKRKFQEIRDAYE 133
           Y    + Y++L V  E   + ++ KA+  LA+++HPD  KN      A+ +F+ I  AYE
Sbjct: 11  YCGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYE 70
Query: 134 TLRDSEKRAQYD 145
           TL+D E +  YD
Sbjct: 71  TLKDDEAKTNYD 82

>pdb|3I38|A Chain A, Structure Of A Putative Chaperone Protein Dnaj From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 Length = 109

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 338 PIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGKVQVKIPKGVQPGQLLVLRGKGLAKN 397
           P+F   G ++ +   ++  +A LG KV VPTL   + + +P G Q GQ L ++GKGL   
Sbjct: 5   PLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKESILLTVPPGSQAGQRLRIKGKGLVSK 64
Query: 398 GLFLDHGDQYVRFRVNFPT 416
                 GD +   ++  PT
Sbjct: 65  ---THTGDLFAVIKIVXPT 80

>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like Protein Length = 94

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 16/96 (16%)
Query: 60  GTTGMFLARRCIHATGSCYSSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNP 119
           G++GM L +          + K+D Y +LG   +A+  ++K+ +  L   YHPD    + 
Sbjct: 4   GSSGMALEQ----------TLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADV 53
Query: 120 SA------KRKFQEIRDAYETLRDSEKRAQYDRRRS 149
            A       +KF EI  A++ L + E + +YD +RS
Sbjct: 54  PAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRS 89

>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4 Length = 155

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Query: 81  KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSA------KRKFQEIRDAYET 134
           K+D Y +LG   +A+  ++K+ +  L   YHPD    +  A       +KF EI  A++ 
Sbjct: 9   KKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKI 68
Query: 135 LRDSEKRAQYDRRR 148
           L + E + +YD +R
Sbjct: 69  LGNEETKREYDLQR 82

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	448
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	6e-91
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	2e-65
1c3g_A	170	Heat shock protein 40; beta sheets, short helices,	1e-38
2q2g_A	180	HSP40 protein, heat shock 40 kDa protein, putative	2e-38
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	2e-33
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	4e-33
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	6e-33
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	1e-32
3agx_A	181	DNAJ homolog subfamily B member 1; chaperone; 1.85	9e-32
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	1e-31
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	3e-31
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	8e-31
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	1e-30
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	3e-30
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	4e-30
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	9e-30
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	2e-29
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	2e-29
3i38_A	109	Putative chaperone DNAJ; structural genomics, prot	6e-29
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	6e-29
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	9e-29
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	3e-28
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	6e-28
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	2e-27
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	9e-27
2ctt_A	104	DNAJ homolog subfamily A member 3; ZING finger, be	9e-25
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	6e-24
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	7e-24
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	9e-24
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	2e-22
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	3e-19
1xao_A	121	YDJ1, mitochondrial protein import protein MAS5; b	3e-18
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	6e-18
1exk_A	79	DNAJ protein; extended beta-hairpin, CXXCXGXG, zin	9e-18
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-17
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	3e-16
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	1e-13
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	2e-13
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	3e-13
2guz_A	71	Mitochondrial import inner membrane translocase su	2e-10
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	3e-09
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	3e-08

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Length = 329

 Score =  277 bits (712), Expect = 6e-91
 Identities = 84/348 (24%), Positives = 140/348 (40%), Gaps = 84/348 (24%)

Query: 80  SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSE 139
             +D Y +LGV        IK A+  LA++YHPD +K    A+ KF+++ +A+E L+D +
Sbjct: 26  ELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSK-ENDAEAKFKDLAEAWEVLKDEQ 84

Query: 140 KRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFED--- 196
           +RA+YD+                       +  GF    QTH      + F +IF     
Sbjct: 85  RRAEYDQ------------------LWQHRNDPGFGRQRQTHEQSYSQQDFDDIFSSMFG 126

Query: 197 --------ETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKI 248
                   + +    D+++E+ +   E     T+ +S++  +P  +  G       KT  
Sbjct: 127 QQAHQRRRQHAARGHDLEIEVAVFLEETLAEQTRTISYN--LPVYNVFGMIESETPKT-- 182

Query: 249 CSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGD 308
                                                          + V IPAGV  G 
Sbjct: 183 -----------------------------------------------LNVKIPAGVVDGQ 195

Query: 309 TIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPT 368
            IR+   G  G  G  +G+L++ + +A  P+F   G ++ +   ++  +A LG KV VPT
Sbjct: 196 RIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPT 255

Query: 369 LSGKVQVKIPKGVQPGQLLVLRGKGLAKNGLFLDHGDQYVRFRVNFPT 416
           L   + + +P G Q GQ L ++GKGL         GD +   ++  PT
Sbjct: 256 LKESILLTVPPGSQAGQRLRIKGKGLVSKT---HTGDLFAVIKIVMPT 300

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1 Length = 248

 Score =  209 bits (535), Expect = 2e-65
 Identities = 65/229 (28%), Positives = 101/229 (44%), Gaps = 20/229 (8%)

Query: 203 PDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGIGRVT--- 259
            DI+ E+  S  E  KG T  ++ +  + C  C GRG    A  K C++C G G      
Sbjct: 12  KDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGAVKK-CTSCNGQGIKFVTR 70

Query: 260 -IPP----FTSTCSTCKGLGRII--KDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDTIRV 312
            + P    F + C  C G G II  KD C +C G  V +  K ++V +  G+  G  I  
Sbjct: 71  QMGPMIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVENERKILEVHVEPGMKDGQRIVF 130

Query: 313 PEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGK 372
               +        G++   +       F RDG D+  ++ I    AI GG+  +  +SG 
Sbjct: 131 KGEADQA-PDVIPGDVVFIVSERPHKSFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGD 189

Query: 373 -VQVKIPKG--VQPGQLLVLRGKGL--AKNGLFLDHGDQYVRFRVNFPT 416
            ++V I  G  + PG   V+ GKG+   K G    +G+  ++F +  P 
Sbjct: 190 WLKVGIVPGEVIAPGMRKVIEGKGMPIPKYG---GYGNLIIKFTIKDPE 235

>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A Length = 170

 Score =  136 bits (346), Expect = 1e-38
 Identities = 33/150 (22%), Positives = 63/150 (42%), Gaps = 8/150 (5%)

Query: 270 CKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLF 329
             G  +  K   +  KG        ++ + +  G  +G  I     G+   +  +   L 
Sbjct: 15  FVGKKKSFK---IGRKGPHGASEKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQ 71

Query: 330 IKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSG-KVQVKIPKGVQPGQLLV 388
             ++    P F RDG D+     +SF +++LG    + T+ G  + +   + VQP Q   
Sbjct: 72  FVIQEKSHPNFKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRVQPVQPSQTST 131

Query: 389 LRGKGL--AKNGLFLDHGDQYVRFRVNFPT 416
             G+G+   KN      G+  V+++V++P 
Sbjct: 132 YPGQGMPTPKNP--SQRGNLIVKYKVDYPI 159

>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II} Length = 180

 Score =  136 bits (346), Expect = 2e-38
 Identities = 33/148 (22%), Positives = 56/148 (37%), Gaps = 1/148 (0%)

Query: 270 CKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLF 329
             G  + IK          V +    V+V I  G   G  +     G+    G   G+L 
Sbjct: 18  YLGKRKKIKVTRKRFIEHKVRNEENIVEVEIKPGWKDGTKLTYSGEGDQESPGTSPGDLV 77

Query: 330 IKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSG-KVQVKIPKGVQPGQLLV 388
           + ++    P F+RD   + +   I   +A+ G    V TL    +Q+ I + V P    +
Sbjct: 78  LIIQTKTHPRFTRDDCHLIMKVTIPLVRALTGFTCPVTTLDNRNLQIPIKEIVNPKTRKI 137

Query: 389 LRGKGLAKNGLFLDHGDQYVRFRVNFPT 416
           +  +G+         GD  + F + FP 
Sbjct: 138 VPNEGMPIKNQPGQKGDLILEFDICFPK 165

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A Length = 103

 Score =  120 bits (303), Expect = 2e-33
 Identities = 46/115 (40%), Positives = 64/115 (55%), Gaps = 14/115 (12%)

Query: 80  SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSE 139
           +K+D YE+LGV + A + EI+KA+  LA +YHPD N+ +  A+ KF+EI++AYE L DS+
Sbjct: 1   AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQ 60

Query: 140 KRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIF 194
           KRA YD+      E          GF    D           FSD F  +F +IF
Sbjct: 61  KRAAYDQYGHAAFEQ---GGMGGGGFGGGAD-----------FSDIFGDVFGDIF 101

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score =  118 bits (299), Expect = 4e-33
 Identities = 40/67 (59%), Positives = 50/67 (74%)

Query: 80  SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSE 139
           S  D Y++LGVP NASQ EIKKA++ LAK+YHPD NK++P AK KF ++ +AYE L D  
Sbjct: 5   SSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEV 64

Query: 140 KRAQYDR 146
           KR QYD 
Sbjct: 65  KRKQYDA 71

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 112

 Score =  119 bits (300), Expect = 6e-33
 Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 1/96 (1%)

Query: 79  SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDS 138
               D Y LLG  E +S ++I   F + A + HPD +  NP A   FQ+++ A E L + 
Sbjct: 17  EDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNE 76

Query: 139 EKRAQYDR-RRSRGSENEKYSAGDAEGFRYAGDAEG 173
           E RA+YD  RRS+ S   +      +  + +G + G
Sbjct: 77  ESRARYDHWRRSQMSMPFQQWEALNDSVKTSGPSSG 112

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score =  118 bits (298), Expect = 1e-32
 Identities = 31/92 (33%), Positives = 45/92 (48%)

Query: 73  ATGSCYSSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAY 132
           + G C  S+   Y+LLGVP  A+Q +IK A++     YHPD N  +  A  +F  I  AY
Sbjct: 8   SQGDCSYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAY 67

Query: 133 ETLRDSEKRAQYDRRRSRGSENEKYSAGDAEG 164
             L  +  R +YDR      +     +G + G
Sbjct: 68  VVLGSATLRRKYDRGLLSDEDLRGPGSGPSSG 99

>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A Length = 181

 Score =  118 bits (299), Expect = 9e-32
 Identities = 40/150 (26%), Positives = 63/150 (42%), Gaps = 4/150 (2%)

Query: 270 CKGLGRIIK--DHCMTCKGSGVVDGVKEVKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGN 327
             G  + +K     +   G  + +  K + + +  G   G  I  P+ G+         +
Sbjct: 17  YSGCTKKMKISHKRLNPDGKSIRNEDKILTIEVKKGWKEGTKITFPKEGDQT-SNNIPAD 75

Query: 328 LFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSG-KVQVKIPKGVQPGQL 386
           +   LK     IF RDG+DV   + IS  +A+ G  V+VPTL G  + V     ++PG  
Sbjct: 76  IVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRTIPVVFKDVIRPGMR 135

Query: 387 LVLRGKGLAKNGLFLDHGDQYVRFRVNFPT 416
             + G+GL         GD  + F V FP 
Sbjct: 136 RKVPGEGLPLPKTPEKRGDLIIEFEVIFPE 165

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Length = 210

 Score =  119 bits (299), Expect = 1e-31
 Identities = 43/156 (27%), Positives = 64/156 (41%), Gaps = 19/156 (12%)

Query: 82  RDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKR 141
           ++ Y LLGV + AS  EI++AF  LA + HPD N NNP+A   F +I  AYE L+D + R
Sbjct: 2   QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLR 61

Query: 142 AQYDR--------RRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEI 193
            +YD+         +    E+  Y   D   +    +             +S    F   
Sbjct: 62  KKYDKYGEKGLEDNQGGQYESWSYYRYDFGIYDDDPEIITLERREFDAAVNSGELWFVNF 121

Query: 194 FEDETSH---FAPDIQVELVLSFAEAAKGCTKHVSF 226
           +    SH    AP        ++ E AK     +  
Sbjct: 122 YSPGCSHCHDLAP--------TWREFAKEVDGLLRI 149

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens} Length = 155

 Score =  116 bits (292), Expect = 3e-31
 Identities = 27/164 (16%), Positives = 52/164 (31%), Gaps = 38/164 (23%)

Query: 79  SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPS------AKRKFQEIRDAY 132
             K+D Y +LG   +A+  ++K+ +  L   YHPD    +          +KF EI  A+
Sbjct: 7   MPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAW 66

Query: 133 ETLRDSEKRAQYDRRRSRGSENEKYSAGDAEGFR-YAGDAEGFRYAYQTHFSDSFHKIFS 191
           + L + E + +YD +R                    + +     +         +     
Sbjct: 67  KILGNEETKREYDLQRCEDDLRNVGPVDAQVYLEEMSWNEGDHSFYLSCRCGGKY----- 121

Query: 192 EIFEDETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSC 235
            + +DE                              + + CD+C
Sbjct: 122 SVSKDE--------------------------AEEVSLISCDTC 139

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus} Length = 88

 Score =  112 bits (283), Expect = 8e-31
 Identities = 33/68 (48%), Positives = 45/68 (66%), Gaps = 1/68 (1%)

Query: 79  SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDS 138
           +   DPY +LGV   ASQ +IKKA+  LA+++HPD NK +P A+ +F +I  AYE L + 
Sbjct: 14  ALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNK-DPGAEDRFIQISKAYEILSNE 72

Query: 139 EKRAQYDR 146
           EKR  YD 
Sbjct: 73  EKRTNYDH 80

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus} Length = 109

 Score =  113 bits (284), Expect = 1e-30
 Identities = 36/95 (37%), Positives = 56/95 (58%), Gaps = 1/95 (1%)

Query: 80  SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSE 139
           S    Y +LG+ +NA+ D+IKK++  LA +YHPD N +NP A  KF+EI +A+  L D+ 
Sbjct: 15  SGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDAT 74

Query: 140 KRAQYDRRRSRG-SENEKYSAGDAEGFRYAGDAEG 173
           KR  YD+  S G    E++   +   +  +G + G
Sbjct: 75  KRNIYDKYGSLGLYVAEQFGEENVNTYFVSGPSSG 109

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score =  111 bits (280), Expect = 3e-30
 Identities = 40/85 (47%), Positives = 57/85 (67%), Gaps = 1/85 (1%)

Query: 80  SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSE 139
           S    Y++LGVP++AS+ +IKKAFH LA +YHPD NK +P A+ KF+EI +AYETL D+ 
Sbjct: 5   SSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNK-SPDAEAKFREIAEAYETLSDAN 63

Query: 140 KRAQYDRRRSRGSENEKYSAGDAEG 164
           +R +YD        + K  +G + G
Sbjct: 64  RRKEYDTLGHSAFTSGKGQSGPSSG 88

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78

 Score =  110 bits (278), Expect = 4e-30
 Identities = 31/67 (46%), Positives = 41/67 (61%), Gaps = 1/67 (1%)

Query: 80  SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSE 139
           S  D YE+LGV   AS +++KKA+  LA ++HPD N   P A   F+ I  AY  L + E
Sbjct: 5   SSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNH-APGATEAFKAIGTAYAVLSNPE 63

Query: 140 KRAQYDR 146
           KR QYD+
Sbjct: 64  KRKQYDQ 70

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score =  121 bits (305), Expect = 9e-30
 Identities = 44/175 (25%), Positives = 68/175 (38%), Gaps = 17/175 (9%)

Query: 80  SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSE 139
             ++ Y LLGV + AS  EI++AF  LA + HPD N NNP+A   F +I  AYE L+D +
Sbjct: 19  HDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDED 78

Query: 140 KRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFEDETS 199
            R +YD+    G +  + + G           +   Y           + F         
Sbjct: 79  LRKKYDK---YGEKGLEDNQGGQYESWSYYRYDFGIYDDDPEIITLERREFDAAVNSGEL 135

Query: 200 H----FAP--DIQVELVLSFAEAAKGCTKHVSFDAFVPCDS----CHG---RGFP 241
                ++P      +L  ++ E AK     +     V C      C       +P
Sbjct: 136 WFVNFYSPGSSHSHDLAPTWREFAKEVDGLLRI-GAVNCGDDRMLCRMKGVNSYP 189

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 82

 Score =  109 bits (274), Expect = 2e-29
 Identities = 33/69 (47%), Positives = 46/69 (66%), Gaps = 1/69 (1%)

Query: 79  SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPS-AKRKFQEIRDAYETLRD 137
           S   D YE+L VP  AS + IKKA+  LA ++HPD N  N   A+R+F+++ +AYE L D
Sbjct: 6   SGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSD 65

Query: 138 SEKRAQYDR 146
           ++KR  YDR
Sbjct: 66  AKKRDIYDR 74

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens} Length = 99

 Score =  109 bits (275), Expect = 2e-29
 Identities = 37/101 (36%), Positives = 51/101 (50%), Gaps = 4/101 (3%)

Query: 82  RDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNP-SAKRKFQEIRDAYETLRDSEK 140
              YE+L VP +AS D+IKKA+   A Q+HPD N +N   A++KF+E+ +AYE L D  K
Sbjct: 2   ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHK 61

Query: 141 RAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYAYQTH 181
           R  YDR    G E    +              G  + +  H
Sbjct: 62  REIYDR---YGREGLTGTGTGPSRAEAGSGGPGLEHHHHHH 99

>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp} Length = 109

 Score =  108 bits (272), Expect = 6e-29
 Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 3/79 (3%)

Query: 338 PIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGKVQVKIPKGVQPGQLLVLRGKGLAKN 397
           P+F   G ++ +   ++  +A LG KV VPTL   + + +P G Q GQ L ++GKGL   
Sbjct: 5   PLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKESILLTVPPGSQAGQRLRIKGKGLVSK 64

Query: 398 GLFLDHGDQYVRFRVNFPT 416
                 GD +   ++  PT
Sbjct: 65  T---HTGDLFAVIKIVMPT 80

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 92

 Score =  108 bits (271), Expect = 6e-29
 Identities = 35/87 (40%), Positives = 54/87 (62%), Gaps = 1/87 (1%)

Query: 79  SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPS-AKRKFQEIRDAYETLRD 137
           S   + YE+LGV  +AS ++IKKA+  LA ++HPD N +N   A++KF+ + +AYE L D
Sbjct: 6   SGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSD 65

Query: 138 SEKRAQYDRRRSRGSENEKYSAGDAEG 164
           S+KR+ YDR           ++G + G
Sbjct: 66  SKKRSLYDRAGCDSWRAGGGASGPSSG 92

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans} Length = 109

 Score =  108 bits (271), Expect = 9e-29
 Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 7/94 (7%)

Query: 78  YSSKRDPYELLGVPENA-SQDEIKKAFHMLAKQYHPDANKNNP---SAKRKFQEIRDAYE 133
           Y    + Y++L V      + ++ KA+  LA+++HPD  KN      A+ +F+ I  AYE
Sbjct: 11  YCGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYE 70

Query: 134 TLRDSEKRAQYDRRRSRGSENEKYSAGDAEGFRY 167
           TL+D E +  YD         ++      + +R 
Sbjct: 71  TLKDDEAKTNYDY---YLDHPDQRFYNYYQYYRL 101

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1 Length = 94

 Score =  106 bits (266), Expect = 3e-28
 Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 6/81 (7%)

Query: 79  SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPS------AKRKFQEIRDAY 132
           + K+D Y +LG   +A+  ++K+ +  L   YHPD    +          +KF EI  A+
Sbjct: 13  TLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAW 72

Query: 133 ETLRDSEKRAQYDRRRSRGSE 153
           + L + E + +YD +RS  S 
Sbjct: 73  KILGNEETKKKYDLQRSGPSS 93

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 77

 Score =  104 bits (262), Expect = 6e-28
 Identities = 31/66 (46%), Positives = 43/66 (65%), Gaps = 1/66 (1%)

Query: 81  KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEK 140
            +D Y+ LG+   AS +EIK+A+   A +YHPD NK  P A+ KF+EI +AY+ L D  K
Sbjct: 2   GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNK-EPGAEEKFKEIAEAYDVLSDPRK 60

Query: 141 RAQYDR 146
           R  +DR
Sbjct: 61  REIFDR 66

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A Length = 73

 Score =  103 bits (258), Expect = 2e-27
 Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 3/67 (4%)

Query: 80  SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSE 139
            +   Y++LGV  +AS +E+KKA+  +A ++HPD    NP    +F++I  AYE L D +
Sbjct: 6   KETGYYDVLGVKPDASDNELKKAYRKMALKFHPD---KNPDGAEQFKQISQAYEVLSDEK 62

Query: 140 KRAQYDR 146
           KR  YD+
Sbjct: 63  KRQIYDQ 69

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae} Length = 92

 Score =  102 bits (255), Expect = 9e-27
 Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 3/67 (4%)

Query: 80  SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSE 139
            +   Y+LLGV  +A++ E+KK +   A +YHPD          KF+EI +A+E L D +
Sbjct: 6   KETKLYDLLGVSPSANEQELKKGYRKAALKYHPDK---PTGDTEKFKEISEAFEILNDPQ 62

Query: 140 KRAQYDR 146
           KR  YD+
Sbjct: 63  KREIYDQ 69

>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 104

 Score = 96.9 bits (242), Expect = 9e-25
 Identities = 33/100 (33%), Positives = 46/100 (46%), Gaps = 4/100 (4%)

Query: 204 DIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGIGRVTIP-- 261
                + L+F +AAKG  K  + +    C+ C+G+G     K + C  C G G  TI   
Sbjct: 3   SGSSGMELTFNQAAKGVNKEFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSGMETINTG 62

Query: 262 PFT--STCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVT 299
           PF   STC  C G G II   C+ C+G+G     K    +
Sbjct: 63  PFVMRSTCRRCGGRGSIIISPCVVCRGAGQAKQKKRSGPS 102

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90

 Score = 94.4 bits (235), Expect = 6e-24
 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 80  SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSE 139
           + +D +++LGV   AS+DE+ KA+  LA   HPD     P ++  F+ + +A   L  + 
Sbjct: 25  NSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCV-APGSEDAFKAVVNARTALLKNI 83

Query: 140 KRAQYD 145
           K     
Sbjct: 84  KSGPSS 89

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 88

 Score = 94.0 bits (234), Expect = 7e-24
 Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 4/76 (5%)

Query: 79  SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPS-AKRKFQEIRDAYETLRD 137
           S  ++   ++       + E KK    L  ++HPD N  N   A   F+ +++    L  
Sbjct: 13  SILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRL-- 70

Query: 138 SEKRAQYDRRRSRGSE 153
            EK+A  D+   R S 
Sbjct: 71  -EKQAFLDQNADRASR 85

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C Length = 174

 Score = 96.5 bits (240), Expect = 9e-24
 Identities = 17/89 (19%), Positives = 36/89 (40%), Gaps = 6/89 (6%)

Query: 79  SSKRDPYELLGVPENASQD--EIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLR 136
                  +LLG+  +A  +   ++KA+    K++HPD   +    + K +++   Y+ + 
Sbjct: 8   EESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKME 63

Query: 137 DSEKRAQYDRRRSRGSENEKYSAGDAEGF 165
           D  K A            E +++    G 
Sbjct: 64  DGVKYAHQPDFGGFWDATEVFASSLNPGV 92

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1 Length = 114

 Score = 90.6 bits (225), Expect = 2e-22
 Identities = 18/87 (20%), Positives = 35/87 (40%), Gaps = 6/87 (6%)

Query: 79  SSKRDPYELLGVPENASQD--EIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLR 136
                  +LLG+  +A  +   ++KA+    K++HPD   +    + K +++   Y+ + 
Sbjct: 5   EESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKME 60

Query: 137 DSEKRAQYDRRRSRGSENEKYSAGDAE 163
           D  K A            E  + G  E
Sbjct: 61  DGVKYAHQPDFGGFWDATEIPTYGTDE 87

>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae} Length = 121

 Score = 79.6 bits (197), Expect = 3e-18
 Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 8/82 (9%)

Query: 340 FSRDGADVYVDSNISFTQAILGGKVDVPTLSGK-VQVKIPKG--VQPGQLLVLRGKG--L 394
           F RDG D+  ++ I    AI GG+  +  +SG  ++V I  G  + PG   V+ GKG  +
Sbjct: 2   FKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPI 61

Query: 395 AKNGLFLDHGDQYVRFRVNFPT 416
            K G    +G+  ++F + FP 
Sbjct: 62  PKYG---GYGNLIIKFTIKFPE 80

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1 Length = 171

 Score = 80.4 bits (198), Expect = 6e-18
 Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 7/72 (9%)

Query: 83  DPYELLGVPENASQD--EIKKAFHMLAKQYHPDANKNNPS-----AKRKFQEIRDAYETL 135
           D + L G+P     D   +   F  L +QYHPD   +        A ++   I  A++TL
Sbjct: 2   DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTL 61

Query: 136 RDSEKRAQYDRR 147
           R    RA+Y   
Sbjct: 62  RHPLMRAEYLLS 73

>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1 Length = 79

 Score = 76.5 bits (189), Expect = 9e-18
 Identities = 29/76 (38%), Positives = 36/76 (47%), Gaps = 4/76 (5%)

Query: 219 GCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGIGRVTIP--PFT--STCSTCKGLG 274
           G TK +       CD CHG G     + + C TC G G+V +    F    TC  C+G G
Sbjct: 1   GVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRG 60

Query: 275 RIIKDHCMTCKGSGVV 290
            +IKD C  C G G V
Sbjct: 61  TLIKDPCNKCHGHGRV 76

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 82.8 bits (205), Expect = 2e-17
 Identities = 32/71 (45%), Positives = 43/71 (60%), Gaps = 3/71 (4%)

Query: 79  SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPS---AKRKFQEIRDAYETL 135
           S KRD Y++LGV  NA + EI KA+  LA Q+HPD  +N      A++KF +I  A E L
Sbjct: 379 SQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVL 438

Query: 136 RDSEKRAQYDR 146
            D E R ++D 
Sbjct: 439 SDPEMRKKFDD 449

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A Length = 181

 Score = 75.8 bits (186), Expect = 3e-16
 Identities = 19/82 (23%), Positives = 31/82 (37%), Gaps = 10/82 (12%)

Query: 79  SSKRDPYELLGVPE-------NASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDA 131
                 YEL               Q  ++K +  L  Q+HPD  +       +   +  A
Sbjct: 8   RFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ---GSEQSSTLNQA 64

Query: 132 YETLRDSEKRAQYDRRRSRGSE 153
           Y TL+D  +R+QY  +  R  +
Sbjct: 65  YHTLKDPLRRSQYMLKLLRNID 86

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J Length = 182

 Score = 68.3 bits (166), Expect = 1e-13
 Identities = 14/63 (22%), Positives = 29/63 (46%), Gaps = 3/63 (4%)

Query: 85  YELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPS---AKRKFQEIRDAYETLRDSEKR 141
           ++ +G+ +  + +++KK +       HPD     P    AK  F E+ DA+    +  ++
Sbjct: 120 WKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQK 179

Query: 142 AQY 144
             Y
Sbjct: 180 PLY 182

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens} Length = 207

 Score = 68.2 bits (166), Expect = 2e-13
 Identities = 16/94 (17%), Positives = 29/94 (30%), Gaps = 7/94 (7%)

Query: 79  SSKRDPYELLGVPE--NASQDEIKKAFHMLAKQYHPDANKNNPSAKR-----KFQEIRDA 131
              RD + L+           +++  +  L +  HPD        ++         + DA
Sbjct: 40  DPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDA 99

Query: 132 YETLRDSEKRAQYDRRRSRGSENEKYSAGDAEGF 165
           Y+TL     R  Y  +       E+        F
Sbjct: 100 YKTLLAPLSRGLYLLKLHGIEIPERTDYEMDRQF 133

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1 Length = 79

 Score = 64.2 bits (156), Expect = 3e-13
 Identities = 13/73 (17%), Positives = 28/73 (38%), Gaps = 6/73 (8%)

Query: 79  SSKRDPYELLGVPENASQD--EIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLR 136
           + K    ELL +P     D   +++A+   +   HPD   ++       QE+   + T +
Sbjct: 8   ADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSH----ALMQELNSLWGTFK 63

Query: 137 DSEKRAQYDRRRS 149
                 + +   +
Sbjct: 64  TEVYNLRMNLGGT 76

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Length = 71

 Score = 55.4 bits (134), Expect = 2e-10
 Identities = 10/63 (15%), Positives = 26/63 (41%), Gaps = 5/63 (7%)

Query: 80  SKRDPYELLGVPENA-SQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDS 138
           + ++  ++L + EN  ++ ++K+    +    HPD   +         +I +A + L   
Sbjct: 12  NSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSP----FLATKINEAKDFLEKR 67

Query: 139 EKR 141
              
Sbjct: 68  GIS 70

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A Length = 92

 Score = 53.1 bits (127), Expect = 3e-09
 Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 3/56 (5%)

Query: 85  YELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPS---AKRKFQEIRDAYETLRD 137
           ++ +G+ +  + +++KK +       HP      P    AK  F E+ DA+    +
Sbjct: 36  WKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana} Length = 106

 Score = 50.4 bits (120), Expect = 3e-08
 Identities = 7/61 (11%), Positives = 27/61 (44%), Gaps = 7/61 (11%)

Query: 85  YELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPS-------AKRKFQEIRDAYETLRD 137
           ++ + + +    + ++K++       HPD  +   +       A++ F+ +++A++    
Sbjct: 43  WKPVPLMDMIEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNT 102

Query: 138 S 138
            
Sbjct: 103 L 103

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	448
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	100.0
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	100.0
3agx_A	181	DNAJ homolog subfamily B member 1; chaperone; 1.85	100.0
2q2g_A	180	HSP40 protein, heat shock 40 kDa protein, putative	100.0
1c3g_A	170	Heat shock protein 40; beta sheets, short helices,	100.0
3i38_A	109	Putative chaperone DNAJ; structural genomics, prot	99.88
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	99.86
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	99.85
1xao_A	121	YDJ1, mitochondrial protein import protein MAS5; b	99.84
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	99.83
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	99.83
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	99.83
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	99.83
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	99.82
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	99.82
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	99.82
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	99.82
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	99.81
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	99.81
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	99.8
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	99.8
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	99.8
2ctt_A	104	DNAJ homolog subfamily A member 3; ZING finger, be	99.78
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	99.76
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.74
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	99.73
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	99.72
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	99.72
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	99.7
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	99.69
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	99.68
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	99.68
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	99.67
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	99.65
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	99.64
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	99.63
2guz_A	71	Mitochondrial import inner membrane translocase su	99.61
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	99.59
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	99.57
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.56
1exk_A	79	DNAJ protein; extended beta-hairpin, CXXCXGXG, zin	99.32
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	99.29
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	98.91
3i38_A	109	Putative chaperone DNAJ; structural genomics, prot	98.79
2guz_B	65	Mitochondrial import inner membrane translocase su	98.77
1xao_A	121	YDJ1, mitochondrial protein import protein MAS5; b	98.73
2q2g_A	180	HSP40 protein, heat shock 40 kDa protein, putative	98.63
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	98.59
1c3g_A	170	Heat shock protein 40; beta sheets, short helices,	98.58
3agx_A	181	DNAJ homolog subfamily B member 1; chaperone; 1.85	98.57
3lcz_A	53	YCZA, inhibitor of trap, regulated by T-box (Trp)	97.46
1exk_A	79	DNAJ protein; extended beta-hairpin, CXXCXGXG, zin	97.41
2ctt_A	104	DNAJ homolog subfamily A member 3; ZING finger, be	97.37
3pmq_A	669	Decaheme cytochrome C MTRF; greek KEY, C type cyto	97.36
2bx9_A	53	Anti-trap, AT, tryptophan RNA-binding attenuator p	96.69
3lcz_A	53	YCZA, inhibitor of trap, regulated by T-box (Trp)	96.63
2bx9_A	53	Anti-trap, AT, tryptophan RNA-binding attenuator p	96.53
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	87.49

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A

Probab=100.00  E-value=1.1e-61  Score=483.57  Aligned_cols=279  Identities=29%  Similarity=0.539  Sum_probs=151.1

Q ss_pred             CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhcccCCCCCcccc
Q 013183           79 SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSENEKYS  158 (448)
Q Consensus        79 ~~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~g~~~~~~~  158 (448)
                      +...|||++|||+++|+.+|||+|||+||++||||++++ ++|+++|++|++||++|+||.+|+.||+++..+.... ++
T Consensus        25 m~~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~-~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~~~~-~~  102 (329)
T 3lz8_A           25 MELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKE-NDAEAKFKDLAEAWEVLKDEQRRAEYDQLWQHRNDPG-FG  102 (329)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCC-hHHHHHHHHHHHHHHHhhhhhhhcccchhhccccCCC-cc
Confidence            445799999999999999999999999999999999984 5789999999999999999999999999843211100 00


Q ss_pred             CCCCCCccccCCCCCceecccccccccccchhcccccc-------ccccCCCCcEEEeeeehhhhcccccceeeeceeee
Q 013183          159 AGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFED-------ETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVP  231 (448)
Q Consensus       159 ~~~~~~~~~~~~~~~f~~~~~~~f~~~f~~~Fs~~f~~-------~~~~~g~di~~~l~isl~e~~~G~~~~i~~~~~~~  231 (448)
                          .+|.+.  +++|.       +.+|.++|+++|++       +...++.|++++|.|+|+|+|+|+++++.+++.+.
T Consensus       103 ----~~~~~~--~~~f~-------~~~f~diF~~~Fg~~g~~~~~~~~~~g~Dl~~~l~vsleea~~G~~k~i~i~~~v~  169 (329)
T 3lz8_A          103 ----RQRQTH--EQSYS-------QQDFDDIFSSMFGQQAHQRRRQHAARGHDLEIEVAVFLEETLAEQTRTISYNLPVY  169 (329)
T ss_dssp             -----------------------------------------------CCCCCCEEEEECCCTTGGGSCEEEEEEEEEEEC
T ss_pred             ----cccccc--cCCcC-------CCchhhhhHhhhcCcCCCCCCCCcCCCCCEEEEEecchhhhhhccceEEEEEEEee
Confidence                001000  00110       01233455555542       12457899999999999999999999999987653


Q ss_pred             CCCCCCCCccCCCccccCCCccceeEEEeCCccccCCCcCCceEEeeecceeecCCcEEeceEEEEEEecCCCCCCCEEE
Q 013183          232 CDSCHGRGFPADAKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDTIR  311 (448)
Q Consensus       232 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~C~~C~g~G~~~~~~~l~V~IppG~~~G~~i~  311 (448)
                      |    |.                 |.+                              .+.+.++++|.||||+++|++|+
T Consensus       170 ~----g~-----------------G~v------------------------------~~~~~~~l~V~IP~Gv~~G~~Ir  198 (329)
T 3lz8_A          170 N----VF-----------------GMI------------------------------ESETPKTLNVKIPAGVVDGQRIR  198 (329)
T ss_dssp             C----SC-----------------C-C------------------------------CEEEEEEEEEEECTTCCTTCEEE
T ss_pred             c----CC-----------------eEE------------------------------EEecceEEEEeCCCCCCCCCEEE
Confidence            2    11                 111                              12335689999999999999999


Q ss_pred             ECCCCCCCCCCCCcccEEEEEEEecCCCcccCCCceEEEeecCHHHHhcCCEEEEeCCCCeEEEEeCCCCCCCcEEEEcC
Q 013183          312 VPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGKVQVKIPKGVQPGQLLVLRG  391 (448)
Q Consensus       312 ~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~I~l~eAl~G~~~~i~tldG~~~v~ip~g~~~g~~~~l~g  391 (448)
                      |+|+|+++..++.+|||||+|+|+||+.|+|+|+||+++++|+++||++|++++|+||||++.|+||++++||++++|+|
T Consensus       199 l~G~G~~g~~gg~~GDL~v~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~v~VptLdG~v~l~ip~gt~~g~~~rl~G  278 (329)
T 3lz8_A          199 LKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKESILLTVPPGSQAGQRLRIKG  278 (329)
T ss_dssp             ESSCSCCC---CCCCCEEEEECCCCCSSCEEETTEEEEEEEECHHHHHHCEEEEECCSSSCEEEEECTTCCTTCEEEETT
T ss_pred             EcccccCCCCCCCCCcEEEEEEEecCCccEEcCCcEEEEEECCHHHHcCCCeEEEECCCCCEEEEECCCCCCCCEEEEcC
Confidence            99999998778889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCcEEEEEEEECCC-----hHHHHHHcCC
Q 013183          392 KGLAKNGLFLDHGDQYVRFRVNFPT-----WQRIVERVRA  426 (448)
Q Consensus       392 ~G~p~~~~~~~~GDL~V~~~V~~P~-----~~~l~~~~~~  426 (448)
                      +|||..+   .+|||||+|+|+||+     ++++++++++
T Consensus       279 ~GmP~~~---~rGDL~v~~~V~~P~~l~~~q~~~l~~~~~  315 (329)
T 3lz8_A          279 KGLVSKT---HTGDLFAVIKIVMPTKPDEKARELWQQLAA  315 (329)
T ss_dssp             CSCBCSS---CBCCEEEEEEECCCSSCCHHHHHHHHHHHH
T ss_pred             CCCCCCC---CCCCEEEEEEEECCCCCCHHHHHHHHHHHh
Confidence            9999763   479999999999998     5566665554

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1

Probab=100.00  E-value=7.6e-54  Score=412.23  Aligned_cols=216  Identities=29%  Similarity=0.549  Sum_probs=200.5

Q ss_pred             ccCCCCcEEEeeeehhhhcccccceeeeceeeeCCCCCCCCccCCCccccCCCccceeEEEeC--------CccccCCCc
Q 013183          199 SHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGIGRVTIP--------PFTSTCSTC  270 (448)
Q Consensus       199 ~~~g~di~~~l~isl~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~--------~~~~~C~~C  270 (448)
                      ..+++|++++|.|||+|+|+|+++++.+.+.+.|+.|+|+|...+. ..+|+.|+|+|++...        .++++|+.|
T Consensus         8 ~~~g~d~~~~l~vslee~~~G~~k~i~~~r~~~C~~C~G~G~~~g~-~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C   86 (248)
T 1nlt_A            8 PQRGKDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGA-VKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVC   86 (248)
T ss_dssp             CCBCCCEEEEEEECTTHHHHCEEEEEEEEEEEECTTTTTCSBSTTT-CCCCTTSSSSSCEEEEEESSSEEEEEECSCTTC
T ss_pred             CCCCCCEEEEEEecHHHhcCCceEEEEeeEEEeCCCCcCccCCCCC-CccCCCCCCCcEEEEEEecCceEEEEEEcCCCC
Confidence            3568999999999999999999999999999999999999998877 4899999999976421        257899999


Q ss_pred             CCceEEe--eecceeecCCcEEeceEEEEEEecCCCCCCCEEEECCCCCCCCCCCCcccEEEEEEEecCCCcccCCCceE
Q 013183          271 KGLGRII--KDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVY  348 (448)
Q Consensus       271 ~G~G~~~--~~~C~~C~g~G~~~~~~~l~V~IppG~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~  348 (448)
                      +|+|+++  +++|..|+|.|++.+.++++|.|||||++|++|+|+|+|++++ ++.+|||||+|+++||+.|+|+|+||+
T Consensus        87 ~G~G~~i~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~~~-~g~~GDl~v~i~v~~h~~F~R~G~DL~  165 (248)
T 1nlt_A           87 HGTGDIIDPKDRCKSCNGKKVENERKILEVHVEPGMKDGQRIVFKGEADQAP-DVIPGDVVFIVSERPHKSFKRDGDDLV  165 (248)
T ss_dssp             SSSSSCCCTTSBCSSSTTSCEEEEEEEEEEEECTTCCTTCEEEETTCSCCCT-TCBCCCEEEEEEECCCSSCEEETTEEE
T ss_pred             CCcCEEeccCCCCcccCCCceEeeeEEEEEEECCCccCCCEEEEeeeecCCC-CCCcceEEEEEEEecCccceeeCCEEE
Confidence            9999999  8999999999999999999999999999999999999999974 568999999999999999999999999


Q ss_pred             EEeecCHHHHhcCCEEEEeCCCCe-EEEEeCCC--CCCCcEEEEcCCCCCCCCCCCCCCcEEEEEEEECCCh
Q 013183          349 VDSNISFTQAILGGKVDVPTLSGK-VQVKIPKG--VQPGQLLVLRGKGLAKNGLFLDHGDQYVRFRVNFPTW  417 (448)
Q Consensus       349 ~~~~I~l~eAl~G~~~~i~tldG~-~~v~ip~g--~~~g~~~~l~g~G~p~~~~~~~~GDL~V~~~V~~P~~  417 (448)
                      ++++|+|.||++|++++|+||||+ +.|+||++  ++||++++|+|+|||..+.. .+|||||+|+|+||+-
T Consensus       166 ~~~~Isl~eAllG~~i~v~tldG~~~~i~ip~g~vt~~g~~~rl~g~Gmp~~~~~-~~GDL~V~~~V~~P~~  236 (248)
T 1nlt_A          166 YEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYG-GYGNLIIKFTIKDPEN  236 (248)
T ss_dssp             EEEEEEHHHHHHCBCCEEECSSSCEEECCBCTTTTCSTTCEEEETTCSCBCSSSC-SBCCEEEEEEEECCC-
T ss_pred             EEEEeCHHHHhcCCEEEEeCCCCCEEEEEeCCCCeeCCCeEEEEcCCCCccCCCC-CcCCEEEEEEEECCCC
Confidence            999999999999999999999996 89999998  99999999999999986443 5799999999999984

>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A

Probab=100.00  E-value=5.1e-42  Score=314.83  Aligned_cols=171  Identities=28%  Similarity=0.492  Sum_probs=148.4

Q ss_pred             CCCcEEEeeeehhhhcccccceeeeceeeeCCCCCCCCccCCCccccCCCccceeEEEeCCccccCCCcCCceEEeeecc
Q 013183          202 APDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDHC  281 (448)
Q Consensus       202 g~di~~~l~isl~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~C  281 (448)
                      ++|++++|.|||+|+|+|+++++.+.+                                                   +|
T Consensus         2 ~~d~~~~l~islee~~~G~~k~i~i~~---------------------------------------------------~c   30 (181)
T 3agx_A            2 DPPVTHDLRVSLEEIYSGCTKKMKISH---------------------------------------------------KR   30 (181)
T ss_dssp             ----CEEEEECHHHHHHCEEEEEEEEE---------------------------------------------------EE
T ss_pred             CCCEEEEEEEEHHHhcCCcEEEEEEec---------------------------------------------------cc
Confidence            468999999999999999999987643                                                   23


Q ss_pred             eeecCCcEEeceEEEEEEecCCCCCCCEEEECCCCCCCCCCCCcccEEEEEEEecCCCcccCCCceEEEeecCHHHHhcC
Q 013183          282 MTCKGSGVVDGVKEVKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILG  361 (448)
Q Consensus       282 ~~C~g~G~~~~~~~l~V~IppG~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~I~l~eAl~G  361 (448)
                      ..|+|.|++.+.++++|.||||+++|++|+|+|+|++++ ++.+|||||+|+++||+.|+|+|+||+++++|+++||++|
T Consensus        31 ~~c~G~g~~~~~~~l~V~Ip~G~~~G~~ir~~G~G~~~~-~g~~GDl~v~i~~~~h~~F~R~G~DL~~~~~Isl~eAllG  109 (181)
T 3agx_A           31 LNPDGKSIRNEDKILTIEVKKGWKEGTKITFPKEGDQTS-NNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCG  109 (181)
T ss_dssp             ECTTSSCEEEEEEEEEEEECTTCCTTCEEEETTCSCCCS-SSCCCCEEEEEEECCCSSCEEETTEEEEEEEEEHHHHHHC
T ss_pred             CCCCCceEEEEeEEEEEEECCCccCCcEEEEeeccccCC-CCCcccEEEEEEEeccccceeeCCcEEEEEEcCHHHHhCC
Confidence            444555566778999999999999999999999999976 6789999999999999999999999999999999999999


Q ss_pred             CEEEEeCCCCe-EEEEeCCCCCCCcEEEEcCCCCCCCCCCCCCCcEEEEEEEECCC-----hHHHHHHc
Q 013183          362 GKVDVPTLSGK-VQVKIPKGVQPGQLLVLRGKGLAKNGLFLDHGDQYVRFRVNFPT-----WQRIVERV  424 (448)
Q Consensus       362 ~~~~i~tldG~-~~v~ip~g~~~g~~~~l~g~G~p~~~~~~~~GDL~V~~~V~~P~-----~~~l~~~~  424 (448)
                      ++++|+|+||+ +.|+||+++++|++++|+|+|||..+..+.+|||||+|+|+||+     ++++++++
T Consensus       110 ~~i~v~tldG~~~~i~i~~~t~~g~~~rl~g~Gmp~~~~~~~~GDL~V~~~V~~P~~ls~~q~~~l~~~  178 (181)
T 3agx_A          110 CTVNVPTLDGRTIPVVFKDVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLEQV  178 (181)
T ss_dssp             EEEEEECTTSCEEEEEECSCCCTTCEEEETTCSCBCSSSTTSBCCEEEEEEEECCSCCCHHHHHHHHHH
T ss_pred             CEEEeECCCCCEEEEECCCccCCCcEEEECCcCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHHHHHHh
Confidence            99999999995 89999999999999999999999864434579999999999997     45555544

>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=7.9e-41  Score=306.79  Aligned_cols=163  Identities=21%  Similarity=0.351  Sum_probs=149.2

Q ss_pred             CCCCcEEEeeeehhhhcccccceeeeceeeeCCCCCCCCccCCCccccCCCccceeEEEeCCccccCCCcCCceEEeeec
Q 013183          201 FAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDH  280 (448)
Q Consensus       201 ~g~di~~~l~isl~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~  280 (448)
                      +++|++++|.|||+|+|+|+++++.+.+.+.|+.                                              
T Consensus         2 ~g~d~~~~l~islee~~~G~~k~i~~~~~~~c~~----------------------------------------------   35 (180)
T 2q2g_A            2 APRSHEVPLLVTLEELYLGKRKKIKVTRKRFIEH----------------------------------------------   35 (180)
T ss_dssp             --CEEEEEEEECHHHHHHCEEEEEEEEEEEEETT----------------------------------------------
T ss_pred             CCCCEEEEEEeeHHHhcCCcEEEEEEeEEEecCC----------------------------------------------
Confidence            4789999999999999999999999999887731                                              


Q ss_pred             ceeecCCcEEeceEEEEEEecCCCCCCCEEEECCCCCCCCCCCCcccEEEEEEEecCCCcccCCCceEEEeecCHHHHhc
Q 013183          281 CMTCKGSGVVDGVKEVKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAIL  360 (448)
Q Consensus       281 C~~C~g~G~~~~~~~l~V~IppG~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~I~l~eAl~  360 (448)
                             |++.+.++++|.|||||++|++|+|+|+|+++.+|+.+|||||+|+++||+.|+|+|+||+++++|+++||++
T Consensus        36 -------g~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~g~~gg~~GDl~v~i~~~~h~~F~R~G~DL~~~~~Isl~eAll  108 (180)
T 2q2g_A           36 -------KVRNEENIVEVEIKPGWKDGTKLTYSGEGDQESPGTSPGDLVLIIQTKTHPRFTRDDCHLIMKVTIPLVRALT  108 (180)
T ss_dssp             -------EEEEEEEEEEEEECTTCCTTCEEEETTCSCCSSTTSCCCEEEEEEEECCCSSCEEETTEEEEEEEEEHHHHHH
T ss_pred             -------ceEEeeEEEEEEECCCCcCCcEEEEeeccCCCCCCCccccEEEEEEEEecccEEEcCCEEEEEEEcCHHHHhC
Confidence                   3355678999999999999999999999999667889999999999999999999999999999999999999


Q ss_pred             CCEEEEeCCCCe-EEEEeCCCCCCCcEEEEcCCCCCCCCCCCCCCcEEEEEEEECCC
Q 013183          361 GGKVDVPTLSGK-VQVKIPKGVQPGQLLVLRGKGLAKNGLFLDHGDQYVRFRVNFPT  416 (448)
Q Consensus       361 G~~~~i~tldG~-~~v~ip~g~~~g~~~~l~g~G~p~~~~~~~~GDL~V~~~V~~P~  416 (448)
                      |++++|+|+||+ +.|++|+++++|++++|+|+|||..+.++.+|||||+|+|+||+
T Consensus       109 G~~i~v~tldG~~v~i~ip~~t~~g~~~rl~g~Gmp~~~~~~~~GDL~V~~~V~~P~  165 (180)
T 2q2g_A          109 GFTCPVTTLDNRNLQIPIKEIVNPKTRKIVPNEGMPIKNQPGQKGDLILEFDICFPK  165 (180)
T ss_dssp             CEEEEEECTTCCEEEEEECSCCCTTCEEEETTCSCBCSSSTTCBCCEEEEEEEECCS
T ss_pred             CCEEEeeCCCCCEEEEECCCccCCCEEEEECCcCCCcCCCCCCcCCEEEEEEEECCC
Confidence            999999999995 89999999999999999999999864434689999999999997

>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A

Probab=100.00  E-value=6.5e-39  Score=291.39  Aligned_cols=158  Identities=22%  Similarity=0.380  Sum_probs=143.9

Q ss_pred             CCcEEEeeeehhhhcccccceeeeceeeeCCCCCCCCccCCCccccCCCccceeEEEeCCccccCCCcCCceEEeeecce
Q 013183          203 PDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDHCM  282 (448)
Q Consensus       203 ~di~~~l~isl~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~C~  282 (448)
                      +|++++|.|||+|+|+|+++++.+.+..    +                                               
T Consensus         1 ~d~~~~l~islee~~~G~~k~i~~~~~~----~-----------------------------------------------   29 (170)
T 1c3g_A            1 ETVQVNLPVSLEDLFVGKKKSFKIGRKG----P-----------------------------------------------   29 (170)
T ss_dssp             CEEEEEEEECHHHHHHTCEEEEEEEEEE----T-----------------------------------------------
T ss_pred             CCEEEEEEeEHHHhhCCcEEEEEEEEec----C-----------------------------------------------
Confidence            4789999999999999999999987651    0                                               


Q ss_pred             eecCCcEEeceEEEEEEecCCCCCCCEEEECCCCCCCCCCCCcccEEEEEEEecCCCcccCCCceEEEeecCHHHHhcCC
Q 013183          283 TCKGSGVVDGVKEVKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGG  362 (448)
Q Consensus       283 ~C~g~G~~~~~~~l~V~IppG~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~I~l~eAl~G~  362 (448)
                          .|.+ +.++++|.||||+++|++|+|+|+|+++.+|+.+|||||+|+++||+.|+|+|+||+++++|+++||++|+
T Consensus        30 ----~G~~-~~~~l~V~Ip~G~~~G~~ir~~g~G~~~~~gg~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~  104 (170)
T 1c3g_A           30 ----HGAS-EKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHPNFKRDGDDLIYTLPLSFKESLLGF  104 (170)
T ss_dssp             ----TTEE-EEEEEEEECCTTCCTTCEEEESSCSSBCSSSSCBCEEEEEEEECCCSSEEEETTEEEEEECCBHHHHHHCE
T ss_pred             ----CCcE-EeEEEEEEeCCCccCCCEEEEeccccCCCCCCccccEEEEEEEccCCccEEeCCcEeEEEEcCHHHHhCCC
Confidence                1223 56799999999999999999999999877888999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCe-EEEEeCCCCCCCcEEEEcCCCCCCCCCCCCCCcEEEEEEEECCC
Q 013183          363 KVDVPTLSGK-VQVKIPKGVQPGQLLVLRGKGLAKNGLFLDHGDQYVRFRVNFPT  416 (448)
Q Consensus       363 ~~~i~tldG~-~~v~ip~g~~~g~~~~l~g~G~p~~~~~~~~GDL~V~~~V~~P~  416 (448)
                      +++|+|+||+ +.|++|+++++|++++|+|+|||..+..+.+|||||+|+|+||+
T Consensus       105 ~~~v~tldG~~~~i~i~~~t~~g~~~rl~g~G~p~~~~~~~~GDL~V~~~V~~P~  159 (170)
T 1c3g_A          105 SKTIQTIDGRTLPLSRVQPVQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKVDYPI  159 (170)
T ss_dssp             EEEEECSSSCEEEEEESSCCCTTCEEECTTCSCBCSSCTTSBCCEEEEECCBCCS
T ss_pred             eEEeeCCCCCEEEEECCCccCCCcEEEEeCCCCCcCCCCCCCCCEEEEEEEECCC
Confidence            9999999996 89999999999999999999999864444579999999999998

>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}

Probab=99.88  E-value=5.3e-23  Score=172.78  Aligned_cols=88  Identities=30%  Similarity=0.533  Sum_probs=78.8

Q ss_pred             ecCCCcccCCCceEEEeecCHHHHhcCCEEEEeCCCCeEEEEeCCCCCCCcEEEEcCCCCCCCCCCCCCCcEEEEEEEEC
Q 013183          335 ADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGKVQVKIPKGVQPGQLLVLRGKGLAKNGLFLDHGDQYVRFRVNF  414 (448)
Q Consensus       335 ~~h~~f~R~G~DL~~~~~I~l~eAl~G~~~~i~tldG~~~v~ip~g~~~g~~~~l~g~G~p~~~~~~~~GDL~V~~~V~~  414 (448)
                      +||+.|+|+|+||+++++|++.||++|++++|+|+||.+.|+||+++++|++++|+|+|||..+   .+|||||+|+|+|
T Consensus         2 kph~~F~R~G~DL~~~~~Isl~eAl~G~~i~v~tldG~~~v~ip~g~~~G~~~rl~G~G~p~~~---~~GDL~v~~~V~~   78 (109)
T 3i38_A            2 NAHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKESILLTVPPGSQAGQRLRIKGKGLVSKT---HTGDLFAVIKIVM   78 (109)
T ss_dssp             --CCCCEEETTEEEEEEEECHHHHHHCEEEEECCSSSCEEEEECTTCCTTCEEEETTCSCBCSS---CBCCEEEEEEECC
T ss_pred             CCCCCeEEECCEEEEEEEcCHHHHhCCCEEEEEcCCCCEEEeeCCCcCcCeEEEECCccCCCCC---CCcCEEEEEEEEC
Confidence            6899999999999999999999999999999999999999999999999999999999999843   5899999999999


Q ss_pred             CC-----hHHHHHHcC
Q 013183          415 PT-----WQRIVERVR  425 (448)
Q Consensus       415 P~-----~~~l~~~~~  425 (448)
                      |+     ++++++++.
T Consensus        79 P~~Ls~~q~~~l~~l~   94 (109)
T 3i38_A           79 PTKPDEKARELWQQLA   94 (109)
T ss_dssp             CSSCCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHH
Confidence            98     455555443

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.86  E-value=7.9e-22  Score=156.23  Aligned_cols=74  Identities=57%  Similarity=0.851  Sum_probs=68.7

Q ss_pred             CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhcccCCC
Q 013183           79 SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGS  152 (448)
Q Consensus        79 ~~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~g~  152 (448)
                      ....|||+||||+++|+.+|||+|||+|+++||||++++++++.++|++|++||++|+||.+|..||.++..+.
T Consensus         4 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~   77 (79)
T 2dn9_A            4 GSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGSGPS   77 (79)
T ss_dssp             SCCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHSCCCCS
T ss_pred             CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhccCcCC
Confidence            45679999999999999999999999999999999998878899999999999999999999999999976543

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A

Probab=99.85  E-value=3.1e-22  Score=166.69  Aligned_cols=73  Identities=49%  Similarity=0.802  Sum_probs=68.3

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhcccCCCC
Q 013183           81 KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSE  153 (448)
Q Consensus        81 ~~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~g~~  153 (448)
                      ..|||+||||+++|+.+|||+|||+|+++||||+++++++++++|++|++||++|+||.+|..||.++..+..
T Consensus         2 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~   74 (103)
T 1bq0_A            2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFE   74 (103)
T ss_dssp             CCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTTSSC
T ss_pred             CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhhhhhc
Confidence            4699999999999999999999999999999999987788899999999999999999999999999876654

>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae}

Probab=99.84  E-value=6.7e-21  Score=163.05  Aligned_cols=87  Identities=30%  Similarity=0.563  Sum_probs=73.8

Q ss_pred             CcccCCCceEEEeecCHHHHhcCCEEEEeCCCCe-EEEEeCCC--CCCCcEEEEcCCCCCCCCCCCCCCcEEEEEEEECC
Q 013183          339 IFSRDGADVYVDSNISFTQAILGGKVDVPTLSGK-VQVKIPKG--VQPGQLLVLRGKGLAKNGLFLDHGDQYVRFRVNFP  415 (448)
Q Consensus       339 ~f~R~G~DL~~~~~I~l~eAl~G~~~~i~tldG~-~~v~ip~g--~~~g~~~~l~g~G~p~~~~~~~~GDL~V~~~V~~P  415 (448)
                      .|+|+|+||+++++|++.+|++|++++|+|+||+ +.|+||+|  +++|++++|+|+|||..+.. .+|||||+|+|+||
T Consensus         1 ~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~~v~ip~g~v~~~G~~~rl~G~Gmp~~~~~-~~GDL~V~~~V~~P   79 (121)
T 1xao_A            1 SFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYG-GYGNLIIKFTIKFP   79 (121)
T ss_dssp             CCEEETTEEEEEEEEEHHHHHHCEEEEEECTTSCEEEEEECTTSCCCTTCEEEETTCSCC-------CCCEEEEEEEECC
T ss_pred             CceEECCeEEEEEEcCHHHHhCCCEEEEecCCCCEEEEEeCCCCeeCCCcEEEECCCCCCCCCCC-CCCCEEEEEEEECC
Confidence            4899999999999999999999999999999997 89999999  99999999999999986443 57999999999999


Q ss_pred             C-------hHHHHHHcCC
Q 013183          416 T-------WQRIVERVRA  426 (448)
Q Consensus       416 ~-------~~~l~~~~~~  426 (448)
                      +       ++++++++..
T Consensus        80 ~~~~ls~~q~~~l~~l~~   97 (121)
T 1xao_A           80 ENHFTSEENLKKLEEILP   97 (121)
T ss_dssp             CTTCSCHHHHHHHHHHSC
T ss_pred             CCCCCCHHHHHHHHHHcc
Confidence            7       3455555543

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.83  E-value=4e-21  Score=151.43  Aligned_cols=71  Identities=45%  Similarity=0.776  Sum_probs=66.0

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhcccCCC
Q 013183           81 KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGS  152 (448)
Q Consensus        81 ~~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~g~  152 (448)
                      ..|||+||||+++|+.+|||+||++|++++|||++++ +.+.+.|++|++||++|+||.+|..||+++.+|.
T Consensus         2 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   72 (77)
T 1hdj_A            2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKE-PGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGL   72 (77)
T ss_dssp             CCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCC-TTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGC
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHHCCHHHHHHHHHHccccc
Confidence            4699999999999999999999999999999999974 6788999999999999999999999999976654

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.83  E-value=4.5e-21  Score=152.99  Aligned_cols=74  Identities=47%  Similarity=0.734  Sum_probs=67.2

Q ss_pred             CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh-hHHHHHHHHHHHHHHhhhhhhhhhhhhcccCCC
Q 013183           79 SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNP-SAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGS  152 (448)
Q Consensus        79 ~~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~-~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~g~  152 (448)
                      +...|||+||||+++++.+|||+|||+|+++||||+++.+. .++++|++|++||++|+||.+|..||.++..+.
T Consensus         6 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~   80 (82)
T 2ej7_A            6 SGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYGSGPS   80 (82)
T ss_dssp             SSSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCCCSC
T ss_pred             CCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCcccc
Confidence            44579999999999999999999999999999999998653 678899999999999999999999999976543

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.83  E-value=5.6e-21  Score=154.48  Aligned_cols=72  Identities=51%  Similarity=0.858  Sum_probs=66.8

Q ss_pred             CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhcccCC
Q 013183           79 SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRG  151 (448)
Q Consensus        79 ~~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~g  151 (448)
                      ....|||+||||+++|+.+|||+|||+|+++||||+++ ++.+.++|++|++||++|+||.+|..||.++..+
T Consensus         4 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~-~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   75 (88)
T 2ctr_A            4 GSSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNK-SPDAEAKFREIAEAYETLSDANRRKEYDTLGHSA   75 (88)
T ss_dssp             CCCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCC-SHHHHHHHHHHHHHHHHHHSSHHHHHHHHTCHHH
T ss_pred             CCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCC-ChHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccc
Confidence            44579999999999999999999999999999999998 5788999999999999999999999999987644

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.83  E-value=5.9e-21  Score=150.82  Aligned_cols=72  Identities=44%  Similarity=0.713  Sum_probs=66.7

Q ss_pred             CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhcccCC
Q 013183           79 SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRG  151 (448)
Q Consensus        79 ~~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~g  151 (448)
                      ....|||+||||+++|+.+|||+||++|+++||||+++ .+.+.++|++|++||++|+||.+|..||.++..+
T Consensus         4 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~-~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~   75 (78)
T 2ctp_A            4 GSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNH-APGATEAFKAIGTAYAVLSNPEKRKQYDQFGSGP   75 (78)
T ss_dssp             SCSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCS-SHHHHHHHHHHHHHHHHHTSHHHHHHHHHTCSCS
T ss_pred             CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-CccHHHHHHHHHHHHHHHCCHHHHHHHHHcCccc
Confidence            44679999999999999999999999999999999997 4788999999999999999999999999997654

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.82  E-value=5.8e-21  Score=157.84  Aligned_cols=71  Identities=38%  Similarity=0.593  Sum_probs=67.0

Q ss_pred             CCCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhcc
Q 013183           78 YSSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRR  148 (448)
Q Consensus        78 ~~~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~  148 (448)
                      .++..|||+||||+++|+.+|||+|||+|+++||||++++++++.++|++|++||+||+||.+|..||+..
T Consensus        13 ~~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l   83 (99)
T 2yua_A           13 SYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRGL   83 (99)
T ss_dssp             SSCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHTC
T ss_pred             CCCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhc
Confidence            45678999999999999999999999999999999999888889999999999999999999999999963

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.82  E-value=1.4e-20  Score=153.44  Aligned_cols=74  Identities=45%  Similarity=0.710  Sum_probs=67.3

Q ss_pred             CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hhHHHHHHHHHHHHHHhhhhhhhhhhhhcccCCC
Q 013183           79 SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNN-PSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGS  152 (448)
Q Consensus        79 ~~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~g~  152 (448)
                      ....|||+||||+++|+.+|||+|||+|+++||||+++.+ +.++++|++|++||++|+||.+|..||.++..+.
T Consensus         6 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   80 (92)
T 2dmx_A            6 SGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGCDSW   80 (92)
T ss_dssp             CCCCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCSCSS
T ss_pred             CCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccc
Confidence            4457999999999999999999999999999999999865 3688999999999999999999999999976554

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.82  E-value=9.7e-21  Score=159.99  Aligned_cols=74  Identities=36%  Similarity=0.560  Sum_probs=69.1

Q ss_pred             CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhcccCCC
Q 013183           79 SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGS  152 (448)
Q Consensus        79 ~~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~g~  152 (448)
                      ....|||+||||+++|+.+|||+|||+|+++||||++++++++.++|++|++||++|+||.+|..||+++..+.
T Consensus        17 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~   90 (112)
T 2ctq_A           17 EDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRRSQM   90 (112)
T ss_dssp             CCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHTC
T ss_pred             cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhhhcc
Confidence            45679999999999999999999999999999999999778899999999999999999999999999976553

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}

Probab=99.82  E-value=1.7e-20  Score=151.69  Aligned_cols=72  Identities=47%  Similarity=0.786  Sum_probs=66.3

Q ss_pred             CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhcccCC
Q 013183           79 SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRG  151 (448)
Q Consensus        79 ~~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~g  151 (448)
                      ....|||+||||+++|+.+|||+|||+|+++||||++++ +.++++|++|++||++|+||.+|..||.++..+
T Consensus        14 ~~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~   85 (88)
T 2cug_A           14 ALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKD-PGAEDRFIQISKAYEILSNEEKRTNYDHYGSGP   85 (88)
T ss_dssp             SSSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCS-TTHHHHHHHHHHHHHHHHSHHHHHHHHHHTTCC
T ss_pred             cCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHHCCHHHHHHHHHcCCCC
Confidence            345799999999999999999999999999999999984 678899999999999999999999999997543

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.81  E-value=1.7e-20  Score=157.65  Aligned_cols=73  Identities=45%  Similarity=0.735  Sum_probs=68.4

Q ss_pred             CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhcccCC
Q 013183           79 SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRG  151 (448)
Q Consensus        79 ~~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~g  151 (448)
                      ....+||+||||+++|+.+|||+|||+|+++||||++++++++.++|++|++||++|+||.+|+.||.++..+
T Consensus        14 ~~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~~   86 (109)
T 2ctw_A           14 TSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGSLG   86 (109)
T ss_dssp             SCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTCHHH
T ss_pred             CCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHhcccc
Confidence            4567999999999999999999999999999999999988889999999999999999999999999987654

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A

Probab=99.81  E-value=2.4e-20  Score=145.40  Aligned_cols=68  Identities=38%  Similarity=0.702  Sum_probs=61.9

Q ss_pred             CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhccc
Q 013183           79 SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRS  149 (448)
Q Consensus        79 ~~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~  149 (448)
                      ....+||+||||+++|+.+|||+||++|++++|||+++++   .++|++|++||++|+||.+|..||++|.
T Consensus         5 ~~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~g~   72 (73)
T 2och_A            5 VKETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDG---AEQFKQISQAYEVLSDEKKRQIYDQGGE   72 (73)
T ss_dssp             -CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTC---HHHHHHHHHHHHHHTSHHHHHHHHHTC-
T ss_pred             cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCH---HHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence            3457999999999999999999999999999999999753   6899999999999999999999999864

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}

Probab=99.80  E-value=3.6e-20  Score=152.88  Aligned_cols=72  Identities=47%  Similarity=0.738  Sum_probs=64.7

Q ss_pred             CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hhHHHHHHHHHHHHHHhhhhhhhhhhhhcccCCCC
Q 013183           82 RDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNN-PSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSE  153 (448)
Q Consensus        82 ~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~g~~  153 (448)
                      .|||+||||+++|+.+|||+|||+|+++||||+++.+ +.++++|++|++||++|+||.+|..||.++..+..
T Consensus         2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~~~~   74 (99)
T 2lgw_A            2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGREGLT   74 (99)
T ss_dssp             CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC---
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccccc
Confidence            4899999999999999999999999999999999865 35789999999999999999999999999876544

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}

Probab=99.80  E-value=3.4e-20  Score=151.14  Aligned_cols=71  Identities=37%  Similarity=0.659  Sum_probs=64.6

Q ss_pred             CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhcccCCC
Q 013183           79 SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGS  152 (448)
Q Consensus        79 ~~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~g~  152 (448)
                      ....|||+||||+++|+.+|||+|||+|+++||||+++++   .++|++|++||++|+||.+|..||.++..+.
T Consensus         5 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~   75 (92)
T 2o37_A            5 VKETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD---TEKFKEISEAFEILNDPQKREIYDQYGLEAA   75 (92)
T ss_dssp             CSCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCC---HHHHHHHHHHHHHHTSHHHHHHHHHHCHHHH
T ss_pred             ccCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCh---HHHHHHHHHHHHHHCCHHHHHHHHHHCHHHh
Confidence            4567999999999999999999999999999999999764   5699999999999999999999999976543

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1

Probab=99.80  E-value=4.3e-20  Score=151.10  Aligned_cols=71  Identities=32%  Similarity=0.597  Sum_probs=64.9

Q ss_pred             CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC------hhHHHHHHHHHHHHHHhhhhhhhhhhhhccc
Q 013183           79 SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNN------PSAKRKFQEIRDAYETLRDSEKRAQYDRRRS  149 (448)
Q Consensus        79 ~~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~------~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~  149 (448)
                      +...|||+||||+++|+.+|||+|||+|+++||||+++.+      +.+.++|++|++||++|+||.+|+.||....
T Consensus        13 ~~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~   89 (94)
T 1wjz_A           13 TLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRS   89 (94)
T ss_dssp             SSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSC
T ss_pred             CCCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcc
Confidence            4567999999999999999999999999999999998743      4578999999999999999999999999854

>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.78  E-value=3.2e-20  Score=154.79  Aligned_cols=99  Identities=31%  Similarity=0.626  Sum_probs=89.5

Q ss_pred             CCCcEEEeeeehhhhcccccceeeeceeeeCCCCCCCCccCCCccccCCCccceeEEEeC----CccccCCCcCCceEEe
Q 013183          202 APDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGIGRVTIP----PFTSTCSTCKGLGRII  277 (448)
Q Consensus       202 g~di~~~l~isl~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~----~~~~~C~~C~G~G~~~  277 (448)
                      |.|++++|+|||+|||+|.++++.+++.+.|+.|+|+|...+....+|+.|+|+|++...    .++++|+.|+|.|+++
T Consensus         1 ~~~~~~~l~vslee~~~G~~~~i~~~~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i   80 (104)
T 2ctt_A            1 GSSGSSGMELTFNQAAKGVNKEFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSGMETINTGPFVMRSTCRRCGGRGSII   80 (104)
T ss_dssp             CCCCCCCCCCCCSSCCSSSCTTCCSSCCEECSSSSSSSSCTTCCCEECSSSSSSCEEEEEETTEEEEEECSSSSSSSEEC
T ss_pred             CCceEEEEEEEHHHHcCCCEEEEEeeeeeECCCCcCCccCCCCCCccCCCCCCCEEEEEEeCCEEEEEECCcCCCcceEC
Confidence            468889999999999999999999999999999999999888888999999999987532    2367999999999999


Q ss_pred             eecceeecCCcEEeceEEEEEEe
Q 013183          278 KDHCMTCKGSGVVDGVKEVKVTI  300 (448)
Q Consensus       278 ~~~C~~C~g~G~~~~~~~l~V~I  300 (448)
                      +++|..|+|.|++.+.++|+|++
T Consensus        81 ~~~C~~C~G~G~v~~~k~l~V~~  103 (104)
T 2ctt_A           81 ISPCVVCRGAGQAKQKKRSGPSS  103 (104)
T ss_dssp             SSCCSSSSSCSEECCCCSSCCSC
T ss_pred             CCcCCCCCCeeEEEEEEEEEEEc
Confidence            99999999999999988887764

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}

Probab=99.76  E-value=4.3e-19  Score=149.16  Aligned_cols=70  Identities=34%  Similarity=0.576  Sum_probs=64.6

Q ss_pred             CCCCcccccCCCCCC-CHHHHHHHHHHHHHHhCCCCCCC---ChhHHHHHHHHHHHHHHhhhhhhhhhhhhccc
Q 013183           80 SKRDPYELLGVPENA-SQDEIKKAFHMLAKQYHPDANKN---NPSAKRKFQEIRDAYETLRDSEKRAQYDRRRS  149 (448)
Q Consensus        80 ~~~~~y~iLgv~~~a-~~~eIk~ayr~la~~~HPD~~~~---~~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~  149 (448)
                      ...|||+||||+++| +.+|||+|||+|++++|||++++   .+.+.++|++|++||++|+||.+|+.||.++.
T Consensus        13 ~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~   86 (109)
T 2qsa_A           13 GLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLD   86 (109)
T ss_dssp             TTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred             CCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcc
Confidence            456999999999999 99999999999999999999975   35688999999999999999999999999864

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.74  E-value=1.4e-18  Score=162.10  Aligned_cols=72  Identities=46%  Similarity=0.760  Sum_probs=67.8

Q ss_pred             CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhcccCCCC
Q 013183           82 RDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSE  153 (448)
Q Consensus        82 ~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~g~~  153 (448)
                      .|||++|||+++|+.+|||+|||+|+++||||++++++++.++|++|++||++|+||.+|+.||+++..+..
T Consensus         2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~~   73 (210)
T 3apq_A            2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLE   73 (210)
T ss_dssp             CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTTTCC
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHhcccccc
Confidence            489999999999999999999999999999999988888999999999999999999999999999876543

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}

Probab=99.73  E-value=4.1e-18  Score=158.68  Aligned_cols=100  Identities=19%  Similarity=0.379  Sum_probs=76.4

Q ss_pred             cccccccccccccccccCCCCchhhhhhhhcccCCCCCCCCCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCh
Q 013183           42 HKRGLYYCSSVTGTLADFGTTGMFLARRCIHATGSCYSSKRDPYELLGVPEN--ASQDEIKKAFHMLAKQYHPDANKNNP  119 (448)
Q Consensus        42 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~iLgv~~~--a~~~eIk~ayr~la~~~HPD~~~~~~  119 (448)
                      ....||+|......    .....+++..+...+++  ....|||++|||+++  ++.++||+|||+|+++||||++++++
T Consensus         9 ~~~~Cw~C~~~~~~----~~~~~~fC~~c~~~q~~--~~~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~   82 (207)
T 3bvo_A            9 NYPRCWNCGGPWGP----GREDRFFCPQCRALQAP--DPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRS   82 (207)
T ss_dssp             --CBCSSSCCBCCS----SCSCCCBCTTTCCBCCC--CTTCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSC
T ss_pred             CCCCCCCCCCCccc----ccccccccccccccCCC--CCCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            34568999853110    12234555556555433  345799999999986  79999999999999999999998654


Q ss_pred             h-----HHHHHHHHHHHHHHhhhhhhhhhhhhc
Q 013183          120 S-----AKRKFQEIRDAYETLRDSEKRAQYDRR  147 (448)
Q Consensus       120 ~-----a~~~f~~i~~Ay~vL~d~~~R~~Yd~~  147 (448)
                      +     +.++|++||+||+||+||.+|+.||..
T Consensus        83 ~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~~  115 (207)
T 3bvo_A           83 QTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLK  115 (207)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence            3     567899999999999999999999974

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.72  E-value=3.9e-18  Score=138.27  Aligned_cols=62  Identities=32%  Similarity=0.552  Sum_probs=57.8

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhh
Q 013183           81 KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQ  143 (448)
Q Consensus        81 ~~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~  143 (448)
                      ..|||+||||+++|+.+|||+|||+|+++||||++++ +.+.++|++|++||++|+||.+|+.
T Consensus        26 ~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~   87 (90)
T 2ys8_A           26 SKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVA-PGSEDAFKAVVNARTALLKNIKSGP   87 (90)
T ss_dssp             CSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCC-TTHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred             CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHHCCcccccC
Confidence            3699999999999999999999999999999999974 6788999999999999999999864

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}

Probab=99.72  E-value=3.4e-18  Score=152.67  Aligned_cols=70  Identities=31%  Similarity=0.588  Sum_probs=64.2

Q ss_pred             CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh------hHHHHHHHHHHHHHHhhhhhhhhhhhhcc
Q 013183           79 SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNP------SAKRKFQEIRDAYETLRDSEKRAQYDRRR  148 (448)
Q Consensus        79 ~~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~------~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~  148 (448)
                      +...|||+||||+++|+.++||+|||+|++++|||++++++      .+.++|++|++||++|+||.+|+.||..+
T Consensus         7 ~~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~   82 (155)
T 2l6l_A            7 MPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQR   82 (155)
T ss_dssp             CCCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHH
T ss_pred             CCCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            45679999999999999999999999999999999998653      36789999999999999999999999874

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.70  E-value=3.6e-18  Score=137.53  Aligned_cols=68  Identities=21%  Similarity=0.238  Sum_probs=60.5

Q ss_pred             CCCCCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh-hHHHHHHHHHHHHHHhhhhhhhhh
Q 013183           76 SCYSSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNP-SAKRKFQEIRDAYETLRDSEKRAQ  143 (448)
Q Consensus        76 ~~~~~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~-~a~~~f~~i~~Ay~vL~d~~~R~~  143 (448)
                      .......++|+||||+++|+.+|||+|||+||++||||++++++ .++++|++|++||++|+|...|..
T Consensus        10 ~~~~~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r~~   78 (88)
T 1iur_A           10 PRGSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFLDQ   78 (88)
T ss_dssp             CSSSCHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred             CCCccHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhccccc
Confidence            34456679999999999999999999999999999999998763 588999999999999999887743

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1

Probab=99.69  E-value=1.6e-17  Score=131.33  Aligned_cols=62  Identities=18%  Similarity=0.306  Sum_probs=56.5

Q ss_pred             CCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhcc
Q 013183           82 RDPYELLGVPEN--ASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRR  148 (448)
Q Consensus        82 ~~~y~iLgv~~~--a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~  148 (448)
                      .++|+||||+++  ++.+|||+|||+||+++|||++++    .++|++|++||++|+|+.+|..+ .+|
T Consensus        11 ~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~----~~~f~~i~~AYe~L~~~~~r~~~-~~g   74 (79)
T 1faf_A           11 ERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS----HALMQELNSLWGTFKTEVYNLRM-NLG   74 (79)
T ss_dssp             HHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC----HHHHHHHHHHHHHHHHHHHHHTT-CCS
T ss_pred             HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC----HHHHHHHHHHHHHHhhHHHHHHH-hcC
Confidence            589999999999  999999999999999999999864    58999999999999999999874 453

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1

Probab=99.68  E-value=3.9e-18  Score=143.92  Aligned_cols=65  Identities=23%  Similarity=0.390  Sum_probs=60.2

Q ss_pred             CCCcccccCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhccc
Q 013183           81 KRDPYELLGVPENASQ--DEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRS  149 (448)
Q Consensus        81 ~~~~y~iLgv~~~a~~--~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~  149 (448)
                      ..+||+||||+++|+.  +|||+|||+||+++|||++++    .++|++|++||+||+||.+|+.||.++.
T Consensus         7 ~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~----~e~f~~I~~AYevL~d~~~R~~~~~~~~   73 (114)
T 1gh6_A            7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMEDGVKYAHQPDFGG   73 (114)
T ss_dssp             HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT----TTTTHHHHHHHHHHHHHHHSCCSSCCSC
T ss_pred             hhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc----HHHHHHHHHHHHHHCCHHHHHHhhhccc
Confidence            3589999999999999  999999999999999999875    4799999999999999999999998754

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C

Probab=99.67  E-value=7.5e-18  Score=151.81  Aligned_cols=65  Identities=23%  Similarity=0.386  Sum_probs=57.7

Q ss_pred             CCCcccccCCCCCCC--HHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhccc
Q 013183           81 KRDPYELLGVPENAS--QDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRS  149 (448)
Q Consensus        81 ~~~~y~iLgv~~~a~--~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~  149 (448)
                      ..|||++|||+++|+  .+|||+|||+||+++|||++++    +++|++|++||++|+||.+|+.||++|.
T Consensus        10 ~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~----~e~F~~I~~AYevLsdp~kR~~YD~~G~   76 (174)
T 2pf4_E           10 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMEDGVKYAHQPDFGG   76 (174)
T ss_dssp             HHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---C----CTTTTHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred             cccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCC----HHHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence            359999999999998  6999999999999999999875    3789999999999999999999999975

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1

Probab=99.65  E-value=5.4e-17  Score=146.96  Aligned_cols=66  Identities=30%  Similarity=0.489  Sum_probs=61.2

Q ss_pred             CcccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCChh-----HHHHHHHHHHHHHHhhhhhhhhhhhhcc
Q 013183           83 DPYELLGVPENA--SQDEIKKAFHMLAKQYHPDANKNNPS-----AKRKFQEIRDAYETLRDSEKRAQYDRRR  148 (448)
Q Consensus        83 ~~y~iLgv~~~a--~~~eIk~ayr~la~~~HPD~~~~~~~-----a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~  148 (448)
                      |||++|||++++  +.++||+|||+|+++||||++++.++     +.++|+.|++||+||+||.+|+.||...
T Consensus         2 d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l   74 (171)
T 1fpo_A            2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSL   74 (171)
T ss_dssp             HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHT
T ss_pred             CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHh
Confidence            899999999999  99999999999999999999987653     4579999999999999999999999974

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J

Probab=99.64  E-value=8.1e-17  Score=145.95  Aligned_cols=63  Identities=22%  Similarity=0.486  Sum_probs=59.4

Q ss_pred             CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChh---HHHHHHHHHHHHHHhhhhhhhhhh
Q 013183           82 RDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPS---AKRKFQEIRDAYETLRDSEKRAQY  144 (448)
Q Consensus        82 ~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~---a~~~f~~i~~Ay~vL~d~~~R~~Y  144 (448)
                      .|||++|||+++|+.+|||+|||+|+++||||++++.+.   |+++|++|++||++|+||.+|+.|
T Consensus       117 ~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~Y  182 (182)
T 1n4c_A          117 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY  182 (182)
T ss_dssp             CCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             cchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence            699999999999999999999999999999999986553   789999999999999999999987

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A

Probab=99.63  E-value=1.1e-16  Score=129.46  Aligned_cols=56  Identities=21%  Similarity=0.440  Sum_probs=52.0

Q ss_pred             CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh---hHHHHHHHHHHHHHHhhh
Q 013183           82 RDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNP---SAKRKFQEIRDAYETLRD  137 (448)
Q Consensus        82 ~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~---~a~~~f~~i~~Ay~vL~d  137 (448)
                      .++|++|||+++|+.+|||+|||++|++||||++++++   .|+++|++|++||+||.+
T Consensus        33 ~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~   91 (92)
T 2qwo_B           33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN   91 (92)
T ss_dssp             CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence            58999999999999999999999999999999998765   378899999999999986

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=99.61  E-value=3e-16  Score=121.43  Aligned_cols=59  Identities=15%  Similarity=0.278  Sum_probs=52.8

Q ss_pred             CCCCCcccccCCCC-CCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhh
Q 013183           79 SSKRDPYELLGVPE-NASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKR  141 (448)
Q Consensus        79 ~~~~~~y~iLgv~~-~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~R  141 (448)
                      +...++|+||||++ +++.+|||+|||+|++++|||++++    .++|++|++||++|+|+..|
T Consensus        11 m~~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g~----~~~f~~i~~Aye~L~~~~~r   70 (71)
T 2guz_A           11 MNSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGS----PFLATKINEAKDFLEKRGIS   70 (71)
T ss_dssp             CCHHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTCC----HHHHHHHHHHHHHHHHHCCC
T ss_pred             CCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC----HHHHHHHHHHHHHHhhhhhc
Confidence            44569999999999 7999999999999999999999753    46999999999999998765

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A

Probab=99.59  E-value=4.5e-16  Score=141.97  Aligned_cols=66  Identities=29%  Similarity=0.491  Sum_probs=59.8

Q ss_pred             CCCCccccc------CCCC-CCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhcc
Q 013183           80 SKRDPYELL------GVPE-NASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRR  148 (448)
Q Consensus        80 ~~~~~y~iL------gv~~-~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~  148 (448)
                      ...|||+||      |+++ +|+.++||+|||+|+++||||++++   +.++|++|++||+||+||.+|+.||...
T Consensus         9 ~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~---a~~~f~~i~~AY~vL~dp~~R~~Yd~~l   81 (181)
T 3uo3_A            9 FTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ---GSEQSSTLNQAYHTLKDPLRRSQYMLKL   81 (181)
T ss_dssp             CSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCS---CSSGGGSHHHHHHHHHSHHHHHHHHHHH
T ss_pred             CCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCcc---HHHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence            346999999      4665 9999999999999999999999975   5789999999999999999999999964

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}

Probab=99.57  E-value=5.5e-16  Score=129.11  Aligned_cols=58  Identities=12%  Similarity=0.213  Sum_probs=51.7

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---Ch----hHHHHHHHHHHHHHHhhhhh
Q 013183           81 KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKN---NP----SAKRKFQEIRDAYETLRDSE  139 (448)
Q Consensus        81 ~~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~---~~----~a~~~f~~i~~Ay~vL~d~~  139 (448)
                      ..|||++||++. |+.+|||+|||+||++|||||+++   ++    .|+++|++|++||++|+|+.
T Consensus        40 ~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~  104 (106)
T 3ag7_A           40 GSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG  104 (106)
T ss_dssp             TSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             cCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence            469999999996 999999999999999999999863   22    36889999999999999975

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.56  E-value=3.7e-16  Score=172.75  Aligned_cols=75  Identities=44%  Similarity=0.730  Sum_probs=40.9

Q ss_pred             CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhcccCCCC
Q 013183           79 SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSE  153 (448)
Q Consensus        79 ~~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~g~~  153 (448)
                      ....|||++|||+++|+.+|||+|||+||++||||++++++++.++|++|++||++|+||.+|+.||++|..+..
T Consensus        18 ~~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~~~~   92 (780)
T 3apo_A           18 RHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLE   92 (780)
T ss_dssp             -----CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC------
T ss_pred             CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHHHHHhhcccccc
Confidence            456799999999999999999999999999999999987788999999999999999999999999999876654

>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1

Probab=99.32  E-value=9.9e-13  Score=103.62  Aligned_cols=74  Identities=38%  Similarity=0.885  Sum_probs=64.7

Q ss_pred             cccceeeeceeeeCCCCCCCCccCCCccccCCCccceeEEEeC----CccccCCCcCCceEEeeecceeecCCcEEec
Q 013183          219 GCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGIGRVTIP----PFTSTCSTCKGLGRIIKDHCMTCKGSGVVDG  292 (448)
Q Consensus       219 G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~----~~~~~C~~C~G~G~~~~~~C~~C~g~G~~~~  292 (448)
                      |.+++|.+++.+.|+.|+|+|........+|+.|+|.|.+...    .++.+|+.|+|.|++++++|..|+|.|++.+
T Consensus         1 G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~~~~   78 (79)
T 1exk_A            1 GVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLIKDPCNKCHGHGRVER   78 (79)
T ss_dssp             CTTTSCCCCCEEECGGGTTTSBCSSSCCEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEECSSBCGGGTTSSEEEC
T ss_pred             CcEEEEEcccceECCCCcccccCCCccCCCCCCCcCeEEEEEEcCCCEEeeECcCCCCccEECCCcCCCCCCeEEEee
Confidence            6788999999999999999998776667899999999987532    2357999999999999999999999998864

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1

Probab=99.29  E-value=3.1e-12  Score=122.46  Aligned_cols=109  Identities=25%  Similarity=0.421  Sum_probs=81.1

Q ss_pred             eeeCCCCCCCCccCC---------CccccCCCccceeEEEeCCccccCCCcCCceEEeeecceeecCC-cEEeceE----
Q 013183          229 FVPCDSCHGRGFPAD---------AKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDHCMTCKGS-GVVDGVK----  294 (448)
Q Consensus       229 ~~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~C~~C~g~-G~~~~~~----  294 (448)
                      ...|+.|+|+|....         ....+|+.|+|.|.++.  ...+|..|+|.|.+.+..-.+...+ |+.++.+    
T Consensus        54 ~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~--~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~ir~~  131 (248)
T 1nlt_A           54 VKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIID--PKDRCKSCNGKKVENERKILEVHVEPGMKDGQRIVFK  131 (248)
T ss_dssp             CCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCC--TTSBCSSSTTSCEEEEEEEEEEEECTTCCTTCEEEET
T ss_pred             CccCCCCCCCcEEEEEEecCceEEEEEEcCCCCCCcCEEec--cCCCCcccCCCceEeeeEEEEEEECCCccCCCEEEEe
Confidence            378999999997421         23568999999997631  2679999999998765444444332 3333222    


Q ss_pred             ----------------------------------------------------------EEEEEecCC--CCCCCEEEECC
Q 013183          295 ----------------------------------------------------------EVKVTIPAG--VDSGDTIRVPE  314 (448)
Q Consensus       295 ----------------------------------------------------------~l~V~IppG--~~~G~~i~~~g  314 (448)
                                                                                .++|.||||  +++|++++++|
T Consensus       132 g~G~~~~~g~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~~i~ip~g~vt~~g~~~rl~g  211 (248)
T 1nlt_A          132 GEADQAPDVIPGDVVFIVSERPHKSFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEG  211 (248)
T ss_dssp             TCSCCCTTCBCCCEEEEEEECCCSSCEEETTEEEEEEEEEHHHHHHCBCCEEECSSSCEEECCBCTTTTCSTTCEEEETT
T ss_pred             eeecCCCCCCcceEEEEEEEecCccceeeCCEEEEEEEeCHHHHhcCCEEEEeCCCCCEEEEEeCCCCeeCCCeEEEEcC
Confidence                                                                      589999999  99999999999


Q ss_pred             CCCCCCCCCCcccEEEEEEEecCCC
Q 013183          315 AGNAGGRGRQHGNLFIKLKVADDPI  339 (448)
Q Consensus       315 ~G~~~~~g~~~GDL~v~i~v~~h~~  339 (448)
                      +|.+...+...|||||+|+|.-...
T Consensus       212 ~Gmp~~~~~~~GDL~V~~~V~~P~~  236 (248)
T 1nlt_A          212 KGMPIPKYGGYGNLIIKFTIKDPEN  236 (248)
T ss_dssp             CSCBCSSSCSBCCEEEEEEEECCC-
T ss_pred             CCCccCCCCCcCCEEEEEEEECCCC
Confidence            9998654446799999999985443

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=98.91  E-value=6.4e-10  Score=112.23  Aligned_cols=65  Identities=46%  Similarity=0.710  Sum_probs=55.7

Q ss_pred             CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC---hhHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 013183           82 RDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNN---PSAKRKFQEIRDAYETLRDSEKRAQYDR  146 (448)
Q Consensus        82 ~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~---~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~  146 (448)
                      .++|++||+.+.++.++|+++|+++++++|||+.+.+   ..++++|++|++||++|+||.+|..||+
T Consensus       382 ~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~  449 (450)
T 2y4t_A          382 RDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD  449 (450)
T ss_dssp             CCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-----
T ss_pred             hhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccC
Confidence            4899999999999999999999999999999998753   2478899999999999999999999997

>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}

Probab=98.79  E-value=3.5e-09  Score=88.42  Aligned_cols=76  Identities=22%  Similarity=0.346  Sum_probs=61.8

Q ss_pred             cCCCCcEEEeeeehhhhcccccceeeeceeeeCCCCCCCCccCCCccccCCCccceeEEEeCCccccCCCcCCceEEeee
Q 013183          200 HFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKD  279 (448)
Q Consensus       200 ~~g~di~~~l~isl~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~  279 (448)
                      +.|.|+.+++.|+|.||+.|++.++..-                                                    
T Consensus         9 R~G~DL~~~~~Isl~eAl~G~~i~v~tl----------------------------------------------------   36 (109)
T 3i38_A            9 IVGHNLEIVLPLAPWEAALGAKVTVPTL----------------------------------------------------   36 (109)
T ss_dssp             EETTEEEEEEEECHHHHHHCEEEEECCS----------------------------------------------------
T ss_pred             EECCEEEEEEEcCHHHHhCCCEEEEEcC----------------------------------------------------
Confidence            3578999999999999999987665421                                                    


Q ss_pred             cceeecCCcEEeceEEEEEEecCCCCCCCEEEECCCCCCCCCCCCcccEEEEEEEecCCCccc
Q 013183          280 HCMTCKGSGVVDGVKEVKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSR  342 (448)
Q Consensus       280 ~C~~C~g~G~~~~~~~l~V~IppG~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R  342 (448)
                                 .+  .++|.||+|+++|++++++|+|.+. .+ ..|||||+|+|.-......
T Consensus        37 -----------dG--~~~v~ip~g~~~G~~~rl~G~G~p~-~~-~~GDL~v~~~V~~P~~Ls~   84 (109)
T 3i38_A           37 -----------KE--SILLTVPPGSQAGQRLRIKGKGLVS-KT-HTGDLFAVIKIVMPTKPDE   84 (109)
T ss_dssp             -----------SS--CEEEEECTTCCTTCEEEETTCSCBC-SS-CBCCEEEEEEECCCSSCCH
T ss_pred             -----------CC--CEEEeeCCCcCcCeEEEECCccCCC-CC-CCcCEEEEEEEECCCCCCH
Confidence                       11  3689999999999999999999987 34 7899999999986554443

>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=98.77  E-value=5.4e-09  Score=78.66  Aligned_cols=52  Identities=17%  Similarity=0.232  Sum_probs=46.0

Q ss_pred             CcccccCCCCC---CCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhh
Q 013183           83 DPYELLGVPEN---ASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDS  138 (448)
Q Consensus        83 ~~y~iLgv~~~---a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~  138 (448)
                      +.|.||||+++   ++.++|+++||+|....|||+.+.    .....+|++|+++|...
T Consensus         5 EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS----~yl~~ki~~Ake~l~~~   59 (65)
T 2guz_B            5 ESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGS----FYLQSKVYRAAERLKWE   59 (65)
T ss_dssp             HHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTCC----HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHHHHH
Confidence            56899999999   999999999999999999999764    45667899999999754

>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae}

Probab=98.73  E-value=9.1e-09  Score=87.53  Aligned_cols=81  Identities=20%  Similarity=0.146  Sum_probs=60.7

Q ss_pred             cCCCCcEEEeeeehhhhcccccceeeeceeeeCCCCCCCCccCCCccccCCCccceeEEEeCCccccCCCcCCceEEeee
Q 013183          200 HFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKD  279 (448)
Q Consensus       200 ~~g~di~~~l~isl~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~  279 (448)
                      +.|.|+.+++.|+|.||+.|++..+.--                                                    
T Consensus         4 R~G~DL~~~~~Isl~eAllG~~i~v~tl----------------------------------------------------   31 (121)
T 1xao_A            4 RDGDDLVYEAEIDLLTAIAGGEFALEHV----------------------------------------------------   31 (121)
T ss_dssp             EETTEEEEEEEEEHHHHHHCEEEEEECT----------------------------------------------------
T ss_pred             EECCeEEEEEEcCHHHHhCCCEEEEecC----------------------------------------------------
Confidence            4588999999999999999987665421                                                    


Q ss_pred             cceeecCCcEEeceEEEEEEecCC--CCCCCEEEECCCCCCCCCCCCcccEEEEEEEecCCC--cccCC
Q 013183          280 HCMTCKGSGVVDGVKEVKVTIPAG--VDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPI--FSRDG  344 (448)
Q Consensus       280 ~C~~C~g~G~~~~~~~l~V~IppG--~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~--f~R~G  344 (448)
                                  ..+.++|.||||  +++|++++++|+|.+...+...|||||+|+|.-+..  +..+.
T Consensus        32 ------------dG~~~~v~ip~g~v~~~G~~~rl~G~Gmp~~~~~~~GDL~V~~~V~~P~~~~ls~~q   88 (121)
T 1xao_A           32 ------------SGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTIKFPENHFTSEEN   88 (121)
T ss_dssp             ------------TSCEEEEEECTTSCCCTTCEEEETTCSCC------CCCEEEEEEEECCCTTCSCHHH
T ss_pred             ------------CCCEEEEEeCCCCeeCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCCCHHH
Confidence                        012578999999  999999999999998754446799999999995554  44444

>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}

Probab=98.63  E-value=5.5e-08  Score=88.45  Aligned_cols=69  Identities=20%  Similarity=0.275  Sum_probs=58.3

Q ss_pred             CCceEEEeecCHHHHhcCCEEEEeCCC------------CeEEEEeCCCCCCCcEEEEcCCCCC-CCCCCCCCCcEEEEE
Q 013183          344 GADVYVDSNISFTQAILGGKVDVPTLS------------GKVQVKIPKGVQPGQLLVLRGKGLA-KNGLFLDHGDQYVRF  410 (448)
Q Consensus       344 G~DL~~~~~I~l~eAl~G~~~~i~tld------------G~~~v~ip~g~~~g~~~~l~g~G~p-~~~~~~~~GDL~V~~  410 (448)
                      |.|+.+++.|||.||+.|++++|....            ..++|+||+|+.+|++++++|+|-+ ..+.  ..|||||++
T Consensus         3 g~d~~~~l~islee~~~G~~k~i~~~~~~~c~~g~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~g~~gg--~~GDl~v~i   80 (180)
T 2q2g_A            3 PRSHEVPLLVTLEELYLGKRKKIKVTRKRFIEHKVRNEENIVEVEIKPGWKDGTKLTYSGEGDQESPGT--SPGDLVLII   80 (180)
T ss_dssp             -CEEEEEEEECHHHHHHCEEEEEEEEEEEEETTEEEEEEEEEEEEECTTCCTTCEEEETTCSCCSSTTS--CCCEEEEEE
T ss_pred             CCCEEEEEEeeHHHhcCCcEEEEEEeEEEecCCceEEeeEEEEEEECCCCcCCcEEEEeeccCCCCCCC--ccccEEEEE
Confidence            789999999999999999998887532            2379999999999999999999987 4443  369999999


Q ss_pred             EEEC
Q 013183          411 RVNF  414 (448)
Q Consensus       411 ~V~~  414 (448)
                      ++.=
T Consensus        81 ~~~~   84 (180)
T 2q2g_A           81 QTKT   84 (180)
T ss_dssp             EECC
T ss_pred             EEEe
Confidence            9874

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A

Probab=98.59  E-value=4.7e-08  Score=97.04  Aligned_cols=72  Identities=22%  Similarity=0.374  Sum_probs=57.3

Q ss_pred             cCCCceEEEeecCHHHHhcCCEEEEeCC------CC--------eEEEEeCCCCCCCcEEEEcCCCCCCCCCCCCCCcEE
Q 013183          342 RDGADVYVDSNISFTQAILGGKVDVPTL------SG--------KVQVKIPKGVQPGQLLVLRGKGLAKNGLFLDHGDQY  407 (448)
Q Consensus       342 R~G~DL~~~~~I~l~eAl~G~~~~i~tl------dG--------~~~v~ip~g~~~g~~~~l~g~G~p~~~~~~~~GDL~  407 (448)
                      +.|.||.+++.|+|.||+.|+++.|...      .|        .++|+||+|+++|++||++|+|.|..+. +..||||
T Consensus       138 ~~g~Dl~~~l~vsleea~~G~~k~i~i~~~v~~g~G~v~~~~~~~l~V~IP~Gv~~G~~Irl~G~G~~g~~g-g~~GDL~  216 (329)
T 3lz8_A          138 ARGHDLEIEVAVFLEETLAEQTRTISYNLPVYNVFGMIESETPKTLNVKIPAGVVDGQRIRLKGQGTPGENG-GPNGDLW  216 (329)
T ss_dssp             CCCCCEEEEECCCTTGGGSCEEEEEEEEEEECCSCC-CCEEEEEEEEEEECTTCCTTCEEEESSCSCCC----CCCCCEE
T ss_pred             CCCCCEEEEEecchhhhhhccceEEEEEEEeecCCeEEEEecceEEEEeCCCCCCCCCEEEEcccccCCCCC-CCCCcEE
Confidence            5688999999999999999987766543      22        3689999999999999999999986522 2469999


Q ss_pred             EEEEEEC
Q 013183          408 VRFRVNF  414 (448)
Q Consensus       408 V~~~V~~  414 (448)
                      |+|+|.=
T Consensus       217 v~I~v~~  223 (329)
T 3lz8_A          217 LVIHIAP  223 (329)
T ss_dssp             EEECCCC
T ss_pred             EEEEEec
Confidence            9988764

>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A

Probab=98.58  E-value=9e-08  Score=86.22  Aligned_cols=70  Identities=13%  Similarity=0.184  Sum_probs=58.1

Q ss_pred             CceEEEeecCHHHHhcCCEEEEeCC----CC-----eEEEEeCCCCCCCcEEEEcCCCCCCC-CCCCCCCcEEEEEEEEC
Q 013183          345 ADVYVDSNISFTQAILGGKVDVPTL----SG-----KVQVKIPKGVQPGQLLVLRGKGLAKN-GLFLDHGDQYVRFRVNF  414 (448)
Q Consensus       345 ~DL~~~~~I~l~eAl~G~~~~i~tl----dG-----~~~v~ip~g~~~g~~~~l~g~G~p~~-~~~~~~GDL~V~~~V~~  414 (448)
                      .|+.+++.|||.||+.|++++|...    .|     .++|+||+|+.+|++++++|+|-+.. +.  ..|||||++++.=
T Consensus         1 ~d~~~~l~islee~~~G~~k~i~~~~~~~~G~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~~~~gg--~~GDl~v~i~v~~   78 (170)
T 1c3g_A            1 ETVQVNLPVSLEDLFVGKKKSFKIGRKGPHGASEKTQIDIQLKPGWKAGTKITYKNQGDYNPQTG--RRKTLQFVIQEKS   78 (170)
T ss_dssp             CEEEEEEEECHHHHHHTCEEEEEEEEEETTTEEEEEEEEEECCTTCCTTCEEEESSCSSBCSSSS--CBCEEEEEEEECC
T ss_pred             CCEEEEEEeEHHHhhCCcEEEEEEEEecCCCcEEeEEEEEEeCCCccCCCEEEEeccccCCCCCC--ccccEEEEEEEcc
Confidence            3889999999999999999988753    12     37999999999999999999998643 32  3699999999874


Q ss_pred             CC
Q 013183          415 PT  416 (448)
Q Consensus       415 P~  416 (448)
                      ..
T Consensus        79 h~   80 (170)
T 1c3g_A           79 HP   80 (170)
T ss_dssp             CS
T ss_pred             CC
Confidence            33

>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A

Probab=98.57  E-value=9.2e-08  Score=87.02  Aligned_cols=70  Identities=14%  Similarity=0.161  Sum_probs=56.1

Q ss_pred             CCceEEEeecCHHHHhcCCEEEEeCC------CC--------eEEEEeCCCCCCCcEEEEcCCCCCCCCCCCCCCcEEEE
Q 013183          344 GADVYVDSNISFTQAILGGKVDVPTL------SG--------KVQVKIPKGVQPGQLLVLRGKGLAKNGLFLDHGDQYVR  409 (448)
Q Consensus       344 G~DL~~~~~I~l~eAl~G~~~~i~tl------dG--------~~~v~ip~g~~~g~~~~l~g~G~p~~~~~~~~GDL~V~  409 (448)
                      |.|+.+++.|||.||+.|++++|...      .|        .++|+||+|+.+|++++++|+|-+..+.  ..|||||.
T Consensus         2 ~~d~~~~l~islee~~~G~~k~i~i~~~c~~c~G~g~~~~~~~l~V~Ip~G~~~G~~ir~~G~G~~~~~g--~~GDl~v~   79 (181)
T 3agx_A            2 DPPVTHDLRVSLEEIYSGCTKKMKISHKRLNPDGKSIRNEDKILTIEVKKGWKEGTKITFPKEGDQTSNN--IPADIVFV   79 (181)
T ss_dssp             ----CEEEEECHHHHHHCEEEEEEEEEEEECTTSSCEEEEEEEEEEEECTTCCTTCEEEETTCSCCCSSS--CCCCEEEE
T ss_pred             CCCEEEEEEEEHHHhcCCcEEEEEEecccCCCCCceEEEEeEEEEEEECCCccCCcEEEEeeccccCCCC--CcccEEEE
Confidence            56899999999999999999888642      23        2689999999999999999999986543  46999999


Q ss_pred             EEEECC
Q 013183          410 FRVNFP  415 (448)
Q Consensus       410 ~~V~~P  415 (448)
                      +++.=.
T Consensus        80 i~~~~h   85 (181)
T 3agx_A           80 LKDKPH   85 (181)
T ss_dssp             EEECCC
T ss_pred             EEEecc
Confidence            998743

>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A

Probab=97.46  E-value=3.3e-05  Score=55.38  Aligned_cols=31  Identities=35%  Similarity=0.811  Sum_probs=24.1

Q ss_pred             ccccCCCcCCceEEeeecceeecCCcEEece
Q 013183          263 FTSTCSTCKGLGRIIKDHCMTCKGSGVVDGV  293 (448)
Q Consensus       263 ~~~~C~~C~G~G~~~~~~C~~C~g~G~~~~~  293 (448)
                      ++++|+.|+|+|.++.++|+.|+|.|++.+.
T Consensus         8 ~~~~C~~C~GsG~~i~~~C~~C~G~G~v~~~   38 (53)
T 3lcz_A            8 LETTCPNCNGSGREEPEPCPKCLGKGVILTA   38 (53)
T ss_dssp             HEEECTTTTTSCEETTEECTTTTTSSEEECH
T ss_pred             eeccCcCCcccccCCCCcCCCCCCcEEEEEE
Confidence            4677888888888888888888888876643

>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1

Probab=97.41  E-value=6.6e-05  Score=58.35  Aligned_cols=47  Identities=32%  Similarity=0.807  Sum_probs=36.4

Q ss_pred             eeeeCCCCCCCCccCC-----CccccCCCccceeEEEeCCccccCCCcCCceEEee
Q 013183          228 AFVPCDSCHGRGFPAD-----AKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIK  278 (448)
Q Consensus       228 ~~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~  278 (448)
                      ....|+.|+|+|....     .....|+.|+|.|.+    +..+|+.|+|.|.+.+
T Consensus        27 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~----~~~~C~~C~G~G~~~~   78 (79)
T 1exk_A           27 QPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTL----IKDPCNKCHGHGRVER   78 (79)
T ss_dssp             CCEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEE----CSSBCGGGTTSSEEEC
T ss_pred             cCCCCCCCcCeEEEEEEcCCCEEeeECcCCCCccEE----CCCcCCCCCCeEEEee
Confidence            3568999999996532     123589999999987    4678999999998753

>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.37  E-value=0.0001  Score=60.51  Aligned_cols=48  Identities=27%  Similarity=0.711  Sum_probs=38.6

Q ss_pred             eeeCCCCCCCCccCC-----CccccCCCccceeEEEeCCccccCCCcCCceEEeeec
Q 013183          229 FVPCDSCHGRGFPAD-----AKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDH  280 (448)
Q Consensus       229 ~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~  280 (448)
                      ...|+.|+|+|....     ....+|+.|+|.|.+    +..+|+.|+|.|.+.+.+
T Consensus        45 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~----i~~~C~~C~G~G~v~~~k   97 (104)
T 2ctt_A           45 VQHCHYCGGSGMETINTGPFVMRSTCRRCGGRGSI----IISPCVVCRGAGQAKQKK   97 (104)
T ss_dssp             CEECSSSSSSCEEEEEETTEEEEEECSSSSSSSEE----CSSCCSSSSSCSEECCCC
T ss_pred             CccCCCCCCCEEEEEEeCCEEEEEECCcCCCcceE----CCCcCCCCCCeeEEEEEE
Confidence            478999999996421     234689999999998    467999999999987654

>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer membrane, electron trans; HET: HEC; 3.20A {Shewanella oneidensis}

Probab=97.36  E-value=1.1e-05  Score=86.35  Aligned_cols=51  Identities=14%  Similarity=0.266  Sum_probs=46.2

Q ss_pred             EEEeeeehhhhcccccceeeeceeeeCCCCCCCCccCCC---ccccCCCcccee
Q 013183          206 QVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADA---KTKICSTCRGIG  256 (448)
Q Consensus       206 ~~~l~isl~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~~---~~~~C~~C~G~G  256 (448)
                      .+++.|+|+|+..|.++++.+.+...|..|+|+|...+.   ...+|+.|+|..
T Consensus       168 ~~~l~i~feeA~~G~~k~i~v~~~~~C~tCHGsGA~~Gt~~~~~~tC~tCHGs~  221 (669)
T 3pmq_A          168 ITNQHYDWQSSGNMLAYTRNLVSIDTCNSCHSNLAFHGGRYNQVETCVTCHNSK  221 (669)
T ss_dssp             SCCCEEEEECSSSSCCCCCCCCCSHHHHHHHSSCCTTTTTSCSSSCSTTTSSTT
T ss_pred             eEEEEEEhHHhhCCCceEEEeccCCcCCCCCCCCCcCCccCcCCccCCCCCCCc
Confidence            467889999999999999999999999999999998776   578999999983

>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*

Probab=96.69  E-value=0.00056  Score=48.95  Aligned_cols=11  Identities=45%  Similarity=1.129  Sum_probs=4.8

Q ss_pred             cCCCcCCceEE
Q 013183          266 TCSTCKGLGRI  276 (448)
Q Consensus       266 ~C~~C~G~G~~  276 (448)
                      +|+.|+|.|.+
T Consensus        25 ~C~~C~G~G~v   35 (53)
T 2bx9_A           25 PCPACSGKGVI   35 (53)
T ss_dssp             ECTTTTTSSEE
T ss_pred             CCccCCCCccE
Confidence            34444444443

>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A

Probab=96.63  E-value=0.00091  Score=47.83  Aligned_cols=26  Identities=38%  Similarity=0.917  Sum_probs=13.4

Q ss_pred             cCCCccceeEEEeCCccccCCCcCCceEEe
Q 013183          248 ICSTCRGIGRVTIPPFTSTCSTCKGLGRII  277 (448)
Q Consensus       248 ~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~  277 (448)
                      +|+.|+|+|.+    +..+|+.|+|.|.+.
T Consensus        11 ~C~~C~GsG~~----i~~~C~~C~G~G~v~   36 (53)
T 3lcz_A           11 TCPNCNGSGRE----EPEPCPKCLGKGVIL   36 (53)
T ss_dssp             ECTTTTTSCEE----TTEECTTTTTSSEEE
T ss_pred             cCcCCcccccC----CCCcCCCCCCcEEEE
Confidence            44444444444    234566666666554

>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*

Probab=96.53  E-value=0.0012  Score=47.31  Aligned_cols=26  Identities=31%  Similarity=0.736  Sum_probs=12.6

Q ss_pred             eeCCCCCCCCccCCCccccCCCccceeEE
Q 013183          230 VPCDSCHGRGFPADAKTKICSTCRGIGRV  258 (448)
Q Consensus       230 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~  258 (448)
                      ..|+.|+|+|...   ..+|+.|+|.|.+
T Consensus        10 ~~C~~C~GsG~~~---~~~C~~C~G~G~v   35 (53)
T 2bx9_A           10 VACPKCERAGEIE---GTPCPACSGKGVI   35 (53)
T ss_dssp             EECTTTTTSSEET---TEECTTTTTSSEE
T ss_pred             ccCCCCcceeccC---CCCCccCCCCccE
Confidence            3455555555432   1345555555554

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=87.49  E-value=0.31  Score=52.32  Aligned_cols=48  Identities=15%  Similarity=0.267  Sum_probs=38.2

Q ss_pred             CCCCCcccccCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHH
Q 013183           79 SSKRDPYELLGVPENASQ--DEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYET  134 (448)
Q Consensus        79 ~~~~~~y~iLgv~~~a~~--~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~v  134 (448)
                      ...++||.+||++.++..  .+|++|||+||+..+++        .+++..|..|+.|
T Consensus       626 ~~~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~--------~~r~~lvd~a~~v  675 (681)
T 2pzi_A          626 DNKASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ--------RHRYTLVDMANKV  675 (681)
T ss_dssp             SCCCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH--------HHHHHHHHHHHHH
T ss_pred             ccCCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh--------HHHHHHHHHhccc
Confidence            445579999999776655  67999999999965533        5789999999876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	448
d1wjza_	94	a.2.3.1 (A:) CSL-type zinc finger-containing prote	1e-22
d1xbla_	75	a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain	4e-22
d1fpoa1	76	a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) doma	2e-18
d1nz6a_	98	a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [T	4e-18
d1iura_	88	a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human	7e-18
d1hdja_	77	a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9	8e-18
d1fafa_	79	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	2e-17
d1exka_	79	g.54.1.1 (A:) Cysteine-rich domain of the chaperon	2e-15
d1nlta2	80	b.4.1.1 (A:258-337) Mitochondrial protein import p	1e-14
d1gh6a_	114	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	5e-14
d1c3ga2	90	b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Ba	5e-13
d1c3ga1	80	b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Ba	3e-11
d1nlta3	74	g.54.1.1 (A:139-212) Mitochondrial protein import	3e-11
d1m1qa_	90	a.138.1.3 (A:) Flavocytochrome c3 (respiratory fum	9e-10
d1nlta1	74	b.4.1.1 (A:110-138,A:213-257) Mitochondrial protei	1e-07

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 89.7 bits (222), Expect = 1e-22
 Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 16/99 (16%)

Query: 60  GTTGMFLARRCIHATGSCYSSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNP 119
           G++GM L +          + K+D Y +LG   +A+  ++K+ +  L   YHPD    + 
Sbjct: 4   GSSGMALEQ----------TLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADV 53

Query: 120 SAKRK------FQEIRDAYETLRDSEKRAQYDRRRSRGS 152
            A         F EI  A++ L + E + +YD +RS  S
Sbjct: 54  PAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRSGPS 92

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 75

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 87.4 bits (216), Expect = 4e-22
 Identities = 35/66 (53%), Positives = 50/66 (75%)

Query: 81  KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEK 140
           K+D YE+LGV + A + EI+KA+  LA +YHPD N+ +  A+ KF+EI++AYE L DS+K
Sbjct: 2   KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQK 61

Query: 141 RAQYDR 146
           RA YD+
Sbjct: 62  RAAYDQ 67

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 76

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 77.4 bits (190), Expect = 2e-18
 Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 7/70 (10%)

Query: 83  DPYELLGVPENASQD--EIKKAFHMLAKQYHPDANKNNPSAKR-----KFQEIRDAYETL 135
           D + L G+P     D   +   F  L +QYHPD   +   A++     +   I  A++TL
Sbjct: 2   DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTL 61

Query: 136 RDSEKRAQYD 145
           R    RA+Y 
Sbjct: 62  RHPLMRAEYL 71

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} Length = 98

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 76.9 bits (189), Expect = 4e-18
 Identities = 12/68 (17%), Positives = 29/68 (42%), Gaps = 3/68 (4%)

Query: 80  SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAK---RKFQEIRDAYETLR 136
           +    ++ +G+ +  + +++KK +       HPD     P  +     F E+ DA+    
Sbjct: 31  AGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFE 90

Query: 137 DSEKRAQY 144
           +  ++  Y
Sbjct: 91  NQGQKPLY 98

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.2 bits (187), Expect = 7e-18
 Identities = 19/82 (23%), Positives = 32/82 (39%), Gaps = 4/82 (4%)

Query: 72  HATGSCYSSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSA-KRKFQEIRD 130
           H      S  ++   ++       + E KK    L  ++HPD N  N       F+ +++
Sbjct: 6   HHLVPRGSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQN 65

Query: 131 AYETLRDSEKRAQYDRRRSRGS 152
               L   EK+A  D+   R S
Sbjct: 66  EINRL---EKQAFLDQNADRAS 84

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.5 bits (185), Expect = 8e-18
 Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 1/75 (1%)

Query: 81  KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEK 140
            +D Y+ LG+   AS +EIK+A+   A +YHPD N   P A+ KF+EI +AY+ L D  K
Sbjct: 2   GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKN-KEPGAEEKFKEIAEAYDVLSDPRK 60

Query: 141 RAQYDRRRSRGSENE 155
           R  +DR    G +  
Sbjct: 61  REIFDRYGEEGLKGS 75

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]} Length = 79

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

 Score = 74.3 bits (182), Expect = 2e-17
 Identities = 13/73 (17%), Positives = 28/73 (38%), Gaps = 6/73 (8%)

Query: 79  SSKRDPYELLGVPENASQD--EIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLR 136
           + K    ELL +P     D   +++A+   +   HPD   ++       QE+   + T +
Sbjct: 8   ADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHA----LMQELNSLWGTFK 63

Query: 137 DSEKRAQYDRRRS 149
                 + +   +
Sbjct: 64  TEVYNLRMNLGGT 76

>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]} Length = 79

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Cysteine-rich domain of the chaperone protein DnaJ
species: Escherichia coli [TaxId: 562]

 Score = 68.6 bits (167), Expect = 2e-15
 Identities = 28/76 (36%), Positives = 35/76 (46%), Gaps = 4/76 (5%)

Query: 219 GCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGIGRVTIPP----FTSTCSTCKGLG 274
           G TK +       CD CHG G     + + C TC G G+V +         TC  C+G G
Sbjct: 1   GVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRG 60

Query: 275 RIIKDHCMTCKGSGVV 290
            +IKD C  C G G V
Sbjct: 61  TLIKDPCNKCHGHGRV 76

>d1nlta2 b.4.1.1 (A:258-337) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 80

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.9 bits (163), Expect = 1e-14
 Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 8/81 (9%)

Query: 340 FSRDGADVYVDSNISFTQAILGGKVDVPTLSG---KVQVKIPKGVQPGQLLVLRGKGL-- 394
           F RDG D+  ++ I    AI GG+  +  +SG   KV +   + + PG   V+ GKG+  
Sbjct: 2   FKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPI 61

Query: 395 AKNGLFLDHGDQYVRFRVNFP 415
            K G    +G+  ++F +  P
Sbjct: 62  PKYG---GYGNLIIKFTIKDP 79

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]} Length = 114

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

 Score = 66.0 bits (160), Expect = 5e-14
 Identities = 18/89 (20%), Positives = 36/89 (40%), Gaps = 6/89 (6%)

Query: 81  KRDPYELLGVPENA--SQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDS 138
                +LLG+  +A  +   ++KA+    K++HPD   +      K +++   Y+ + D 
Sbjct: 7   SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEE----KMKKMNTLYKKMEDG 62

Query: 139 EKRAQYDRRRSRGSENEKYSAGDAEGFRY 167
            K A            E  + G  E  ++
Sbjct: 63  VKYAHQPDFGGFWDATEIPTYGTDEWEQW 91

>d1c3ga2 b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 90

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.3 bits (151), Expect = 5e-13
 Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 1/78 (1%)

Query: 340 FSRDGADVYVDSNISFTQAILGGKVDVPTLSGKVQ-VKIPKGVQPGQLLVLRGKGLAKNG 398
           F RDG D+     +SF +++LG    + T+ G+   +   + VQP Q     G+G+    
Sbjct: 2   FKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRVQPVQPSQTSTYPGQGMPTPK 61

Query: 399 LFLDHGDQYVRFRVNFPT 416
                G+  V+++V++P 
Sbjct: 62  NPSQRGNLIVKYKVDYPI 79

>d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 80

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.2 bits (138), Expect = 3e-11
 Identities = 9/70 (12%), Positives = 21/70 (30%), Gaps = 3/70 (4%)

Query: 269 TCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNL 328
              G  +  K       G+       ++ + +  G  +G  I     G+   +  +   L
Sbjct: 14  LFVGKKKSFKIGRKGPHGAS---EKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTL 70

Query: 329 FIKLKVADDP 338
              ++    P
Sbjct: 71  QFVIQEKSHP 80

>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 74

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.6 bits (136), Expect = 3e-11
 Identities = 23/71 (32%), Positives = 29/71 (40%), Gaps = 11/71 (15%)

Query: 230 VPCDSCHGRGFPADAKTKICSTCRGIGRVTIP--------PFTSTCSTCKGLGRII--KD 279
           + C  C GRG       K C++C G G   +          F + C  C G G II  KD
Sbjct: 3   ILCKECEGRGG-KKGAVKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDPKD 61

Query: 280 HCMTCKGSGVV 290
            C +C G  V 
Sbjct: 62  RCKSCNGKKVE 72

>d1m1qa_ a.138.1.3 (A:) Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain {Shewanella oneidensis [TaxId: 70863]} Length = 90

class: All alpha proteins
fold: Multiheme cytochromes
superfamily: Multiheme cytochromes
family: Di-heme elbow motif
domain: Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain
species: Shewanella oneidensis [TaxId: 70863]

 Score = 53.2 bits (127), Expect = 9e-10
 Identities = 14/74 (18%), Positives = 20/74 (27%), Gaps = 11/74 (14%)

Query: 228 AFVPCDSCHGRGFPADAKT---KICSTCRGIGRVTIPPFT--------STCSTCKGLGRI 276
               C+SCH  G P+         C +C G                  + C     +   
Sbjct: 10  ESGGCESCHKDGTPSADGAFEFAQCQSCHGKLSEMDAVHKPHDGNLVCADCHAVHDMNVG 69

Query: 277 IKDHCMTCKGSGVV 290
            K  C +C   G  
Sbjct: 70  QKPTCESCHDDGRT 83

>d1nlta1 b.4.1.1 (A:110-138,A:213-257) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 74

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.2 bits (109), Expect = 1e-07
 Identities = 12/71 (16%), Positives = 27/71 (38%), Gaps = 2/71 (2%)

Query: 342 RDGADVYVDSNISFTQAILGGKVDVPTLSGKVQVKIPKGVQPGQLLVLRGKGLAKNGLFL 401
           + G D+  + + S  +   G    +      ++V +  G++ GQ +V +G+        +
Sbjct: 2   QRGKDIKHEISASLEELYKGRTAKLALNRKILEVHVEPGMKDGQRIVFKGEADQ--APDV 59

Query: 402 DHGDQYVRFRV 412
             GD       
Sbjct: 60  IPGDVVFIVSE 70

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	448
d1xbla_	75	DnaJ chaperone, N-terminal (J) domain {Escherichia	99.89
d1hdja_	77	HSP40 {Human (Homo sapiens) [TaxId: 9606]}	99.85
d1c3ga2	90	Heat shock protein 40 Sis1 {Baker's yeast (Sacchar	99.85
d1nlta2	80	Mitochondrial protein import protein mas5 (Hsp40,	99.81
d1wjza_	94	CSL-type zinc finger-containing protein 3 (J-domai	99.8
d1gh6a_	114	Large T antigen, the N-terminal J domain {Simian v	99.78
d1fafa_	79	Large T antigen, the N-terminal J domain {Murine p	99.71
d1fpoa1	76	HSC20 (HSCB), N-terminal (J) domain {Escherichia c	99.69
d1c3ga1	80	Heat shock protein 40 Sis1 {Baker's yeast (Sacchar	99.67
d1iura_	88	Hypothetical protein KIAA0730 {Human (Homo sapiens	99.65
d1nz6a_	98	Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}	99.62
d1nlta1	74	Mitochondrial protein import protein mas5 (Hsp40,	99.61
d1exka_	79	Cysteine-rich domain of the chaperone protein DnaJ	99.49
d1nlta1	74	Mitochondrial protein import protein mas5 (Hsp40,	99.41
d1nlta3	74	Mitochondrial protein import protein mas5 (Hsp40,	99.11
d1c3ga1	80	Heat shock protein 40 Sis1 {Baker's yeast (Sacchar	98.81
d1nlta2	80	Mitochondrial protein import protein mas5 (Hsp40,	98.7
d1c3ga2	90	Heat shock protein 40 Sis1 {Baker's yeast (Sacchar	98.65
d1exka_	79	Cysteine-rich domain of the chaperone protein DnaJ	97.59
d1nlta3	74	Mitochondrial protein import protein mas5 (Hsp40,	96.96
d1m1qa_	90	Flavocytochrome c3 (respiratory fumarate reductase	95.91

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=1.3e-23  Score=162.80  Aligned_cols=72  Identities=49%  Similarity=0.797  Sum_probs=67.6

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhcccCCC
Q 013183           81 KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGS  152 (448)
Q Consensus        81 ~~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~g~  152 (448)
                      .+|||+||||+++||.+|||+|||+|+++||||++++++.++++|++|++||+||+||.+|..||++|..+.
T Consensus         2 k~dyY~vLgv~~~As~~eIk~aYr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~~~   73 (75)
T d1xbla_           2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAF   73 (75)
T ss_dssp             CCCTTTTTCCSSSCCHHHHHHHHHHHHHHTCCTTCTTTCHHHHHHHHHHHHHHHTTSSHHHHHHHHHTTSSC
T ss_pred             CCCHHHHcCCCCCcCHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHhCcccc
Confidence            469999999999999999999999999999999999888889999999999999999999999999976543

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=5e-22  Score=154.62  Aligned_cols=72  Identities=44%  Similarity=0.770  Sum_probs=66.9

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhcccCCCC
Q 013183           81 KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSE  153 (448)
Q Consensus        81 ~~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~g~~  153 (448)
                      .+|||+||||+++||.+||++||++|++++|||++. ++++.++|+.|++||+||+||.+|+.||++|..|..
T Consensus         2 ~kdyY~iLgv~~~as~~eIk~ay~~l~~~~hPD~~~-~~~~~~~~~~i~~Ay~vLsdp~~R~~YD~~g~~~~~   73 (77)
T d1hdja_           2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNK-EPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGLK   73 (77)
T ss_dssp             CCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCC-CTTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGCC
T ss_pred             CCChHHHcCCCCCcCHHHHHHHHHHHHHHhcccccc-chhHHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhc
Confidence            469999999999999999999999999999999997 467889999999999999999999999999877653

>d1c3ga2 b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.85  E-value=4.2e-22  Score=159.75  Aligned_cols=78  Identities=27%  Similarity=0.511  Sum_probs=73.3

Q ss_pred             CcccCCCceEEEeecCHHHHhcCCEEEEeCCCCe-EEEEeCCCCCCCcEEEEcCCCCCCCCCCCCCCcEEEEEEEECCC
Q 013183          339 IFSRDGADVYVDSNISFTQAILGGKVDVPTLSGK-VQVKIPKGVQPGQLLVLRGKGLAKNGLFLDHGDQYVRFRVNFPT  416 (448)
Q Consensus       339 ~f~R~G~DL~~~~~I~l~eAl~G~~~~i~tldG~-~~v~ip~g~~~g~~~~l~g~G~p~~~~~~~~GDL~V~~~V~~P~  416 (448)
                      .|+|+|+||+++++|++.||++|++++|+|+||+ +.|++|+++++|++++|+|+|||..+..+.+|||||+|+|++|+
T Consensus         1 ~F~R~G~DL~~~~~I~~~eal~G~~~~i~~~dG~~i~i~ip~~~~~g~~~~i~g~G~p~~~~~~~rGdL~V~~~v~~P~   79 (90)
T d1c3ga2           1 NFKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRVQPVQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKVDYPI   79 (90)
T ss_dssp             SEEEETTEEEEEECCBHHHHHHCEEEEEECSSSCEEEEEESSCCCTTCEEECTTCSCBCSSCTTSBCCEEEEECCBCCS
T ss_pred             CCeEeCCeEEEEEEeCHHHHhcCCeEEEecccccceecccccccccccccccCCCCCCcCCCCCCcCCEEEEEEEEcCC
Confidence            4899999999999999999999999999999996 79999999999999999999999875555689999999999998

>d1nlta2 b.4.1.1 (A:258-337) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.81  E-value=1.2e-20  Score=147.96  Aligned_cols=77  Identities=31%  Similarity=0.580  Sum_probs=70.9

Q ss_pred             CcccCCCceEEEeecCHHHHhcCCEEEEeCCCCe-EEEEeCCC--CCCCcEEEEcCCCCCCCCCCCCCCcEEEEEEEECC
Q 013183          339 IFSRDGADVYVDSNISFTQAILGGKVDVPTLSGK-VQVKIPKG--VQPGQLLVLRGKGLAKNGLFLDHGDQYVRFRVNFP  415 (448)
Q Consensus       339 ~f~R~G~DL~~~~~I~l~eAl~G~~~~i~tldG~-~~v~ip~g--~~~g~~~~l~g~G~p~~~~~~~~GDL~V~~~V~~P  415 (448)
                      .|+|+|+||+++++|++.||++|++++|+|+||. ++++||++  +++|++++|+|+|||..+. +.+|||||+|+|++|
T Consensus         1 tF~R~G~dL~~~~~I~~~eal~G~~~~i~~~dg~~~~i~i~~~~~~~~g~~~~i~g~G~p~~~~-~~~GDL~v~~~V~~P   79 (80)
T d1nlta2           1 SFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKY-GGYGNLIIKFTIKDP   79 (80)
T ss_dssp             SCEEETTEEEEEEEEEHHHHHHCBCCEEECSSSCEEECCBCTTTTCSTTCEEEETTCSCBCSSS-CSBCCEEEEEEEECC
T ss_pred             CcEEeCCEEEEEEEeCHHHHhCCCEEEEEecCcceEEEEeCCCCCcCCCCEEEecCCCCCCCCc-CCcCcEEEEEEEEcC
Confidence            4999999999999999999999999999999996 67888876  8999999999999998854 368999999999999


Q ss_pred             C
Q 013183          416 T  416 (448)
Q Consensus       416 ~  416 (448)
                      +
T Consensus        80 k   80 (80)
T d1nlta2          80 E   80 (80)
T ss_dssp             C
T ss_pred             C
Confidence            6

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=1.2e-20  Score=152.21  Aligned_cols=70  Identities=31%  Similarity=0.595  Sum_probs=63.8

Q ss_pred             CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC------hhHHHHHHHHHHHHHHhhhhhhhhhhhhcc
Q 013183           79 SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNN------PSAKRKFQEIRDAYETLRDSEKRAQYDRRR  148 (448)
Q Consensus        79 ~~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~------~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~  148 (448)
                      ...+|||+||||+++|+.+|||+||++|+++||||+++.+      +.++++|+.|++||+||+||.+|..||...
T Consensus        13 ~~~~d~Y~iLgv~~~as~~eIk~aY~~l~~~~HPDk~~~~~~~~~~~~a~~~f~~I~~Ay~vL~d~~~R~~YD~~~   88 (94)
T d1wjza_          13 TLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQR   88 (94)
T ss_dssp             SSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHS
T ss_pred             hhccChHHHcCCCCCcCHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHcc
Confidence            3457999999999999999999999999999999998764      347889999999999999999999999874

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

Probab=99.78  E-value=2.3e-20  Score=156.08  Aligned_cols=66  Identities=23%  Similarity=0.385  Sum_probs=60.0

Q ss_pred             CCCcccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhcccC
Q 013183           81 KRDPYELLGVPENA--SQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSR  150 (448)
Q Consensus        81 ~~~~y~iLgv~~~a--~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~  150 (448)
                      ..+||+||||+++|  +.++||+|||+||++||||++++    .++|++|++||+||+||.+|+.||.++..
T Consensus         7 ~~~ly~iLGv~~~a~~~~~~IKkAYrkla~k~HPDk~~~----~e~F~~I~~AY~vLsd~~kR~~YD~~~~~   74 (114)
T d1gh6a_           7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMEDGVKYAHQPDFGGF   74 (114)
T ss_dssp             HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT----TTTTHHHHHHHHHHHHHHHSCCSSCCSCC
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhcccchhh----HHHHHHHHHHHHHhCCHHHHHHHhccCCC
Confidence            35899999999999  78899999999999999999975    36899999999999999999999987543

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

Probab=99.71  E-value=2.7e-18  Score=133.12  Aligned_cols=64  Identities=19%  Similarity=0.309  Sum_probs=58.9

Q ss_pred             CCCcccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhcc
Q 013183           81 KRDPYELLGVPENA--SQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRR  148 (448)
Q Consensus        81 ~~~~y~iLgv~~~a--~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~  148 (448)
                      ..+||+||||++++  +.++||+|||+++++||||++++    .++|++||+||++|+|+.+|..||..+
T Consensus        10 ~~~~y~iLgl~~~~~~~~~~IkkaYr~l~~~~HPDk~g~----~e~~~~in~Ay~~L~d~~~r~~~~~~~   75 (79)
T d1fafa_          10 KERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS----HALMQELNSLWGTFKTEVYNLRMNLGG   75 (79)
T ss_dssp             HHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC----HHHHHHHHHHHHHHHHHHHHHTTCCSS
T ss_pred             HHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCcccCCC----HHHHHHHHHHHHHHCCHHHHHHHccCC
Confidence            45899999999987  99999999999999999999864    578999999999999999999999863

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.69  E-value=6.5e-18  Score=130.71  Aligned_cols=66  Identities=30%  Similarity=0.496  Sum_probs=58.3

Q ss_pred             CCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCChh-----HHHHHHHHHHHHHHhhhhhhhhhhhhc
Q 013183           82 RDPYELLGVPEN--ASQDEIKKAFHMLAKQYHPDANKNNPS-----AKRKFQEIRDAYETLRDSEKRAQYDRR  147 (448)
Q Consensus        82 ~~~y~iLgv~~~--a~~~eIk~ayr~la~~~HPD~~~~~~~-----a~~~f~~i~~Ay~vL~d~~~R~~Yd~~  147 (448)
                      .|||++|||+++  ++.+|||+||+++++++|||++.+.+.     +.+.|+.|++||+||+||.+|+.|+..
T Consensus         1 lnyy~lLgl~~~~~~d~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~a~~~~~~i~~Ay~vL~dp~~R~~Yll~   73 (76)
T d1fpoa1           1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLS   73 (76)
T ss_dssp             CHHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred             CChHHHCCCCCCCCCCHHHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            389999999985  558999999999999999999865432     668899999999999999999999864

>d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.67  E-value=8.6e-17  Score=125.53  Aligned_cols=80  Identities=18%  Similarity=0.279  Sum_probs=68.3

Q ss_pred             CCcEEEeeeehhhhcccccceeeeceeeeCCCCCCCCccCCCccccCCCccceeEEEeCCccccCCCcCCceEEeeecce
Q 013183          203 PDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDHCM  282 (448)
Q Consensus       203 ~di~~~l~isl~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~C~  282 (448)
                      ++|+++|.|||+|+|+|+++++++.+..    |+                 |.                           
T Consensus         1 e~v~~~l~vtLee~~~G~~k~i~~~r~~----~~-----------------g~---------------------------   32 (80)
T d1c3ga1           1 ETVQVNLPVSLEDLFVGKKKSFKIGRKG----PH-----------------GA---------------------------   32 (80)
T ss_dssp             CEEEEEEEECHHHHHHTCEEEEEEEEEE----TT-----------------TE---------------------------
T ss_pred             CCEEEEeEEEHHHHhCCCceEeecceec----cc-----------------CC---------------------------
Confidence            4789999999999999999999876432    11                 11                           


Q ss_pred             eecCCcEEeceEEEEEEecCCCCCCCEEEECCCCCCCCCCCCcccEEEEEEEecCC
Q 013183          283 TCKGSGVVDGVKEVKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDP  338 (448)
Q Consensus       283 ~C~g~G~~~~~~~l~V~IppG~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~  338 (448)
                              .+.++++|.||||+++|++|+|+|+|++.+.++.+|||+|+|+++|||
T Consensus        33 --------~~~~~~~v~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~~~i~~~~HP   80 (80)
T d1c3ga1          33 --------SEKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHP   80 (80)
T ss_dssp             --------EEEEEEEEECCTTCCTTCEEEESSCSSBCSSSSCBCEEEEEEEECCCS
T ss_pred             --------CceEEEEEEECCCCCCCcEEEECCccccCcCCCCCCCEEEEEEeCCCC
Confidence                    134689999999999999999999999987777899999999999998

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=3e-17  Score=129.86  Aligned_cols=69  Identities=22%  Similarity=0.294  Sum_probs=60.2

Q ss_pred             CCCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh-hHHHHHHHHHHHHHHhhhhhhhhhhhhccc
Q 013183           78 YSSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNP-SAKRKFQEIRDAYETLRDSEKRAQYDRRRS  149 (448)
Q Consensus        78 ~~~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~-~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~  149 (448)
                      .....++|+||+|+.+||.+|||+|||+|+++||||++++++ .|.++|+.|++||++|++   +..||+...
T Consensus        12 ~~~~~~~y~iL~v~~~as~~eIKkAYrrl~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~~---~~~~d~~~~   81 (88)
T d1iura_          12 GSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEK---QAFLDQNAD   81 (88)
T ss_dssp             SSCHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHH---HTTCSSSSS
T ss_pred             hhHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHH---HHHhhccch
Confidence            344579999999999999999999999999999999998775 488999999999999975   667777643

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.62  E-value=6.5e-17  Score=130.79  Aligned_cols=64  Identities=22%  Similarity=0.473  Sum_probs=58.4

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh---hHHHHHHHHHHHHHHhhhhhhhhhh
Q 013183           81 KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNP---SAKRKFQEIRDAYETLRDSEKRAQY  144 (448)
Q Consensus        81 ~~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~---~a~~~f~~i~~Ay~vL~d~~~R~~Y  144 (448)
                      ..+.|++||++..++.++||+|||++++++|||++++++   .+++.|+.|++||++|+||.+|+.|
T Consensus        32 ~~~~y~~Lgl~~~~t~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~I~~Ay~~L~d~~~R~~Y   98 (98)
T d1nz6a_          32 GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY   98 (98)
T ss_dssp             TCCSCCCCCGGGCCSHHHHHHHHHHHHHHSCHHHHTTSTTHHHHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred             cccCCeecCCCccCCHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHCCHHHHhcC
Confidence            347799999999999999999999999999999987654   3788999999999999999999988

>d1nlta1 b.4.1.1 (A:110-138,A:213-257) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.61  E-value=1e-15  Score=117.50  Aligned_cols=73  Identities=19%  Similarity=0.282  Sum_probs=65.4

Q ss_pred             cCCCCcEEEeeeehhhhcccccceeeeceeeeCCCCCCCCccCCCccccCCCccceeEEEeCCccccCCCcCCceEEeee
Q 013183          200 HFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKD  279 (448)
Q Consensus       200 ~~g~di~~~l~isl~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~  279 (448)
                      ++++|++++|.|||+|||.|+++++.+.                                                    
T Consensus         2 rkg~di~~~l~isleea~~G~~~~~~~~----------------------------------------------------   29 (74)
T d1nlta1           2 QRGKDIKHEISASLEELYKGRTAKLALN----------------------------------------------------   29 (74)
T ss_dssp             CBCCCEEEEEEECTTHHHHCEEEEEEEE----------------------------------------------------
T ss_pred             CCCCCEEEEEEecHHHHHhhcccceeec----------------------------------------------------
Confidence            5789999999999999999998887642                                                    


Q ss_pred             cceeecCCcEEeceEEEEEEecCCCCCCCEEEECCCCCCCCCCCCcccEEEEEEEecCC
Q 013183          280 HCMTCKGSGVVDGVKEVKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDP  338 (448)
Q Consensus       280 ~C~~C~g~G~~~~~~~l~V~IppG~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~  338 (448)
                                   .+.++|+||||+++|++|+|+|+|++.+ ++.+|||+|+|+++||.
T Consensus        30 -------------~~~~~i~Ip~G~~~G~~ir~~g~G~~~~-~~~~GDl~v~i~~~pHk   74 (74)
T d1nlta1          30 -------------RKILEVHVEPGMKDGQRIVFKGEADQAP-DVIPGDVVFIVSERPHK   74 (74)
T ss_dssp             -------------EEEEEEEECTTCCTTCEEEETTCSCCCT-TCBCCCEEEEEEECCCS
T ss_pred             -------------CccEEEEecccccCCeEEEecCCcCCCC-CCCCCCEEEEEEecCCC
Confidence                         2478999999999999999999999975 67899999999999995

>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Cysteine-rich domain of the chaperone protein DnaJ
species: Escherichia coli [TaxId: 562]

Probab=99.49  E-value=6.9e-15  Score=114.16  Aligned_cols=74  Identities=38%  Similarity=0.885  Sum_probs=67.1

Q ss_pred             cccceeeeceeeeCCCCCCCCccCCCccccCCCccceeEEEeC----CccccCCCcCCceEEeeecceeecCCcEEec
Q 013183          219 GCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGIGRVTIP----PFTSTCSTCKGLGRIIKDHCMTCKGSGVVDG  292 (448)
Q Consensus       219 G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~----~~~~~C~~C~G~G~~~~~~C~~C~g~G~~~~  292 (448)
                      |++++|.|++.+.|+.|+|+|........+|+.|+|.|++.+.    .++++|+.|+|+|++++++|..|+|.|++++
T Consensus         1 G~~k~i~i~~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~v~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~k   78 (79)
T d1exka_           1 GVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLIKDPCNKCHGHGRVER   78 (79)
T ss_dssp             CTTTSCCCCCEEECGGGTTTSBCSSSCCEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEECSSBCGGGTTSSEEEC
T ss_pred             CceEEEEeeeeccCCCCcCcccCCCccceeCCCccceeEEEEecccceeeEECcccCcceeECCCCCCCCCCceEeec
Confidence            6789999999999999999999888888999999999987643    2477999999999999999999999999875

>d1nlta1 b.4.1.1 (A:110-138,A:213-257) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.41  E-value=2.2e-13  Score=104.16  Aligned_cols=70  Identities=17%  Similarity=0.266  Sum_probs=64.1

Q ss_pred             cCCCceEEEeecCHHHHhcCCEEEEeCCCCeEEEEeCCCCCCCcEEEEcCCCCCCCCCCCCCCcEEEEEEEE
Q 013183          342 RDGADVYVDSNISFTQAILGGKVDVPTLSGKVQVKIPKGVQPGQLLVLRGKGLAKNGLFLDHGDQYVRFRVN  413 (448)
Q Consensus       342 R~G~DL~~~~~I~l~eAl~G~~~~i~tldG~~~v~ip~g~~~g~~~~l~g~G~p~~~~~~~~GDL~V~~~V~  413 (448)
                      |+|.|++++++|||.||++|+++.|.+..+.+.|+||+|+++|++++++|+|.+..+.  .+|||+|++++.
T Consensus         2 rkg~di~~~l~isleea~~G~~~~~~~~~~~~~i~Ip~G~~~G~~ir~~g~G~~~~~~--~~GDl~v~i~~~   71 (74)
T d1nlta1           2 QRGKDIKHEISASLEELYKGRTAKLALNRKILEVHVEPGMKDGQRIVFKGEADQAPDV--IPGDVVFIVSER   71 (74)
T ss_dssp             CBCCCEEEEEEECTTHHHHCEEEEEEEEEEEEEEEECTTCCTTCEEEETTCSCCCTTC--BCCCEEEEEEEC
T ss_pred             CCCCCEEEEEEecHHHHHhhcccceeecCccEEEEecccccCCeEEEecCCcCCCCCC--CCCCEEEEEEec
Confidence            6899999999999999999999999987777999999999999999999999987653  469999999874

>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.11  E-value=1.4e-11  Score=93.86  Aligned_cols=64  Identities=38%  Similarity=0.853  Sum_probs=53.1

Q ss_pred             eeeeCCCCCCCCccCCCccccCCCccceeEEEeC--------CccccCCCcCCceEEe--eecceeecCCcEEec
Q 013183          228 AFVPCDSCHGRGFPADAKTKICSTCRGIGRVTIP--------PFTSTCSTCKGLGRII--KDHCMTCKGSGVVDG  292 (448)
Q Consensus       228 ~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~--------~~~~~C~~C~G~G~~~--~~~C~~C~g~G~~~~  292 (448)
                      |.++|+.|+|+|..... ..+|+.|+|+|.+...        .++.+|+.|+|+|+++  +++|..|+|.|++++
T Consensus         1 r~v~C~~C~G~G~~~~~-~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~~~~~C~~C~G~g~v~E   74 (74)
T d1nlta3           1 KQILCKECEGRGGKKGA-VKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVENE   74 (74)
T ss_dssp             EEEECTTTTTCSBSTTT-CCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCCTTSBCSSSTTSCEEEE
T ss_pred             CccCCcCCcccccCCCC-CCCCCCCcceeeeeEEEEecCcEEEEEEECccCccceEEeCCCCCCCCCCCeeEeCC
Confidence            56899999999988654 5789999999986532        2467899999999987  468999999998864

>d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.81  E-value=4.9e-09  Score=80.67  Aligned_cols=68  Identities=13%  Similarity=0.212  Sum_probs=56.3

Q ss_pred             CceEEEeecCHHHHhcCCEEEEeC----CCC-----eEEEEeCCCCCCCcEEEEcCCCCCCCCCCCCCCcEEEEEEEE
Q 013183          345 ADVYVDSNISFTQAILGGKVDVPT----LSG-----KVQVKIPKGVQPGQLLVLRGKGLAKNGLFLDHGDQYVRFRVN  413 (448)
Q Consensus       345 ~DL~~~~~I~l~eAl~G~~~~i~t----ldG-----~~~v~ip~g~~~g~~~~l~g~G~p~~~~~~~~GDL~V~~~V~  413 (448)
                      +||.+++.|||.||+.|+++.|..    .+|     .+.|.||+|+.+|++++++|+|....+. +..|||+|.+++.
T Consensus         1 e~v~~~l~vtLee~~~G~~k~i~~~r~~~~g~~~~~~~~v~Ip~G~~~G~~i~~~g~G~~~~~~-~~~GDl~~~i~~~   77 (80)
T d1c3ga1           1 ETVQVNLPVSLEDLFVGKKKSFKIGRKGPHGASEKTQIDIQLKPGWKAGTKITYKNQGDYNPQT-GRRKTLQFVIQEK   77 (80)
T ss_dssp             CEEEEEEEECHHHHHHTCEEEEEEEEEETTTEEEEEEEEEECCTTCCTTCEEEESSCSSBCSSS-SCBCEEEEEEEEC
T ss_pred             CCEEEEeEEEHHHHhCCCceEeecceecccCCCceEEEEEEECCCCCCCcEEEECCccccCcCC-CCCCCEEEEEEeC
Confidence            478999999999999999877753    444     2689999999999999999999876532 2369999999875

>d1nlta2 b.4.1.1 (A:258-337) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.70  E-value=1.3e-08  Score=78.27  Aligned_cols=72  Identities=21%  Similarity=0.187  Sum_probs=60.1

Q ss_pred             cCCCCcEEEeeeehhhhcccccceeeeceeeeCCCCCCCCccCCCccccCCCccceeEEEeCCccccCCCcCCceEEeee
Q 013183          200 HFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKD  279 (448)
Q Consensus       200 ~~g~di~~~l~isl~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~  279 (448)
                      +.|.|+.+++.|+|.||+.|+++++...                                                    
T Consensus         4 R~G~dL~~~~~I~~~eal~G~~~~i~~~----------------------------------------------------   31 (80)
T d1nlta2           4 RDGDDLVYEAEIDLLTAIAGGEFALEHV----------------------------------------------------   31 (80)
T ss_dssp             EETTEEEEEEEEEHHHHHHCBCCEEECS----------------------------------------------------
T ss_pred             EeCCEEEEEEEeCHHHHhCCCEEEEEec----------------------------------------------------
Confidence            4588999999999999999988776531                                                    


Q ss_pred             cceeecCCcEEeceEEEEEEecCC--CCCCCEEEECCCCCCCCCCCCcccEEEEEEEe
Q 013183          280 HCMTCKGSGVVDGVKEVKVTIPAG--VDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVA  335 (448)
Q Consensus       280 ~C~~C~g~G~~~~~~~l~V~IppG--~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~  335 (448)
                                  ..+.++|.||++  +++|++++++|+|.+...+...|||+|+++|+
T Consensus        32 ------------dg~~~~i~i~~~~~~~~g~~~~i~g~G~p~~~~~~~GDL~v~~~V~   77 (80)
T d1nlta2          32 ------------SGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTIK   77 (80)
T ss_dssp             ------------SSCEEECCBCTTTTCSTTCEEEETTCSCBCSSSCSBCCEEEEEEEE
T ss_pred             ------------CcceEEEEeCCCCCcCCCCEEEecCCCCCCCCcCCcCcEEEEEEEE
Confidence                        113567778777  99999999999999887777899999999987

>d1c3ga2 b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.65  E-value=1.6e-08  Score=79.45  Aligned_cols=78  Identities=24%  Similarity=0.272  Sum_probs=62.6

Q ss_pred             cCCCCcEEEeeeehhhhcccccceeeeceeeeCCCCCCCCccCCCccccCCCccceeEEEeCCccccCCCcCCceEEeee
Q 013183          200 HFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKD  279 (448)
Q Consensus       200 ~~g~di~~~l~isl~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~  279 (448)
                      ++|.|+.+++.|+|.||+.|++.++..-                                                    
T Consensus         4 R~G~DL~~~~~I~~~eal~G~~~~i~~~----------------------------------------------------   31 (90)
T d1c3ga2           4 RDGDDLIYTLPLSFKESLLGFSKTIQTI----------------------------------------------------   31 (90)
T ss_dssp             EETTEEEEEECCBHHHHHHCEEEEEECS----------------------------------------------------
T ss_pred             EeCCeEEEEEEeCHHHHhcCCeEEEecc----------------------------------------------------
Confidence            4588999999999999999988776521                                                    


Q ss_pred             cceeecCCcEEeceEEEEEEecCCCCCCCEEEECCCCCCCCC-CCCcccEEEEEEEecCCCcc
Q 013183          280 HCMTCKGSGVVDGVKEVKVTIPAGVDSGDTIRVPEAGNAGGR-GRQHGNLFIKLKVADDPIFS  341 (448)
Q Consensus       280 ~C~~C~g~G~~~~~~~l~V~IppG~~~G~~i~~~g~G~~~~~-g~~~GDL~v~i~v~~h~~f~  341 (448)
                                  ..++++|+||+|+++|++++++|+|.+... ++..|||+|+++|.-...+.
T Consensus        32 ------------dG~~i~i~ip~~~~~g~~~~i~g~G~p~~~~~~~rGdL~V~~~v~~P~~ls   82 (90)
T d1c3ga2          32 ------------DGRTLPLSRVQPVQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKVDYPISLN   82 (90)
T ss_dssp             ------------SSCEEEEEESSCCCTTCEEECTTCSCBCSSCTTSBCCEEEEECCBCCSSCC
T ss_pred             ------------cccceecccccccccccccccCCCCCCcCCCCCCcCCEEEEEEEEcCCCCC
Confidence                        123688999999999999999999997643 35689999999998443343

>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Cysteine-rich domain of the chaperone protein DnaJ
species: Escherichia coli [TaxId: 562]

Probab=97.59  E-value=1.3e-05  Score=60.65  Aligned_cols=46  Identities=33%  Similarity=0.826  Sum_probs=37.0

Q ss_pred             eeeCCCCCCCCccCC-----CccccCCCccceeEEEeCCccccCCCcCCceEEee
Q 013183          229 FVPCDSCHGRGFPAD-----AKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIK  278 (448)
Q Consensus       229 ~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~  278 (448)
                      ...|+.|+|+|....     ....+|+.|+|+|.+    +..+|..|+|+|++.+
T Consensus        28 ~~~C~~C~G~G~v~~~~g~~~~~~~C~~C~G~G~~----i~~~C~~C~G~G~v~k   78 (79)
T d1exka_          28 PQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTL----IKDPCNKCHGHGRVER   78 (79)
T ss_dssp             CEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEE----CSSBCGGGTTSSEEEC
T ss_pred             ceeCCCccceeEEEEecccceeeEECcccCcceeE----CCCCCCCCCCceEeec
Confidence            467999999996531     224589999999998    4578999999998865

>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.96  E-value=0.00011  Score=54.76  Aligned_cols=46  Identities=26%  Similarity=0.593  Sum_probs=34.8

Q ss_pred             eeCCCCCCCCccCCC---------ccccCCCccceeEEEeCCccccCCCcCCceEEe
Q 013183          230 VPCDSCHGRGFPADA---------KTKICSTCRGIGRVTIPPFTSTCSTCKGLGRII  277 (448)
Q Consensus       230 ~~C~~C~G~G~~~~~---------~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~  277 (448)
                      ..|+.|+|+|.....         ....|+.|+|+|.++.  ...+|..|+|+|.+.
T Consensus        19 ~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~--~~~~C~~C~G~g~v~   73 (74)
T d1nlta3          19 KKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIID--PKDRCKSCNGKKVEN   73 (74)
T ss_dssp             CCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCC--TTSBCSSSTTSCEEE
T ss_pred             CCCCCCcceeeeeEEEEecCcEEEEEEECccCccceEEeC--CCCCCCCCCCeeEeC
Confidence            469999999975321         2468999999997632  245899999999764

>d1m1qa_ a.138.1.3 (A:) Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain {Shewanella oneidensis [TaxId: 70863]}

class: All alpha proteins
fold: Multiheme cytochromes
superfamily: Multiheme cytochromes
family: Di-heme elbow motif
domain: Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain
species: Shewanella oneidensis [TaxId: 70863]

Probab=95.91  E-value=0.00013  Score=56.13  Aligned_cols=61  Identities=23%  Similarity=0.513  Sum_probs=46.6

Q ss_pred             eCCCCCCCCccCCCc---cccCCCccceeEEEeC--------CccccCCCcCCceEEeeecceeecCCcEEe
Q 013183          231 PCDSCHGRGFPADAK---TKICSTCRGIGRVTIP--------PFTSTCSTCKGLGRIIKDHCMTCKGSGVVD  291 (448)
Q Consensus       231 ~C~~C~G~G~~~~~~---~~~C~~C~G~G~~~~~--------~~~~~C~~C~G~G~~~~~~C~~C~g~G~~~  291 (448)
                      .|..|+|.|......   ...|..|+|.|.....        ..-..|..|+|.|..+...|..|++.|.+.
T Consensus        13 ~C~~CH~~~~~~~~~~~~~~~C~~CHg~~~~~~~~~~~h~~~~~c~~CH~~H~~~~~~~~~C~~CH~~gr~~   84 (90)
T d1m1qa_          13 GCESCHKDGTPSADGAFEFAQCQSCHGKLSEMDAVHKPHDGNLVCADCHAVHDMNVGQKPTCESCHDDGRTS   84 (90)
T ss_dssp             CGGGTSGGGCCCSSSHHHHHHHHHHHCCGGGSCTTTGGGTTTCCGGGTCCTTTSBTTCCCCSTTTCSSCCCH
T ss_pred             CCCCcCCCCccccCCCCCCCcCcccCCCceeEeeccccccCccccccCccccCCCCcCCCccccccCCCccc
Confidence            599999988754332   4579999999864322        124678899999998999999999988643