Citrus Sinensis ID: 013198

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------45
MELGASSRVLSNNTLLRFSPESTFRRRYQVPVNPTSLNHHQRRFSNASFQLSNSYSIRETTYKKVVNMSKVDSREFELSSLTALSPLDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALEVKNIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVEIMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSFLSMKLPISRWQRDLTDSTVLRNMGGGLGHSLLAYKSALQGIAKLQVLYKC
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccHHHHccHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccccccEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccHHHHcccccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHcc
cccccccHHcccccccccccHHHcccccccccccccccccccccccccEEccccccccccccccccccccccccccccccEEEEcccccccHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccHHHHHHHHHEHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccHHccEccccccccHHHcccccccHHHHHHHHHHHccccEcccEEEcccHHHHHHHHHHHHHHcHEEEcccHHHHHHHHHHHccEEEEccccccccccccccccccccccccHHHHHHHHHHHHHcccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccEEcccc
melgassrvlsnntllrfspestfrrryqvpvnptslnhhqrrfsnasfqlsnsysireTTYKKVVNMSkvdsrefelssltalspldgrywskvkdlapymseyGLIYFRVLVEIKWLLKlskipevtevpsfsEEAKSYLQGLidgfnmddalevkniervtnHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMlsrthgqpaspttlgKEISVFAIRLGRERQEISQVEIMGKFAGAVGNYNahlsaypdvnwpqiTEDFVKSlglsfnpyvtqIETHDYMAKLFYAFVRFNnilidfdrdVWGYISLAYFKQVTkageigsstmphkvnpidfensegnlgkanedlsflsmklpisrwqrdltdstvlrnmggglgHSLLAYKSALQGIAKLQVLYKC
melgassrvlsnntllrfspestfrrrYQVPvnptslnhhqrrfsnasfqlsnsysireTTYKKVVNMSkvdsrefelssltalspldgrywSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPevtevpsfsEEAKSYLQGLIDGFNMDDALEVKNIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSrthgqpaspttlgKEISVFAIRLGRERQEISQVEIMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSFLSMKLPISRWQRDLTDSTVLRNMGGGLGHSLLAYKSALQGIAKLQVLYKC
MELGASSRVLSNNTLLRFSPESTFRRRYQVPVNPTSLNHHQRRFSNASFQLSNSYSIRETTYKKVVNMSKVDSREFELSSLTALSPLDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALEVKNIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVEIMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSFLSMKLPISRWQRDLTDSTVLRNMGGGLGHSLLAYKSALQGIAKLQVLYKC
******************************************************YSIRETTYKKVVNMSKVDSREFELSSLTALSPLDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALEVKNIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISM*************LGKEISVFAIRLGRERQEISQVEIMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEI***************************LSFLSMKLPISRWQRDLTDSTVLRNMGGGLGHSLLAYKSALQGIAKLQVLY**
***************LRF*********************************************************FELSSLTALSPLDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALEVKNIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVEIMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKA****SSTMPHKVNPIDFENSEGNLGKANEDLSFLSMKLPISRWQRDLTDSTVLRNMGGGLGHSLLAYKSALQGIAKLQVLYKC
MELGASSRVLSNNTLLRFSPESTFRRRYQVPVNPTSLNHHQRRFSNASFQLSNSYSIRETTYKKVVNMSKVDSREFELSSLTALSPLDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALEVKNIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLS*********TTLGKEISVFAIRLGRERQEISQVEIMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSFLSMKLPISRWQRDLTDSTVLRNMGGGLGHSLLAYKSALQGIAKLQVLYKC
*************TLLRFSPESTFRRRYQVPVNPTSLNHHQRRFSNASFQLSNSYSI******************FELSSLTALSPLDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALEVKNIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVEIMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSFLSMKLPISRWQRDLTDSTVLRNMGGGLGHSLLAYKSALQGIAKLQV***C
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MELGASSRVLSNNTLLRFSPESTFRRRYQVPVNPTSLNHHQRRFSNASFQLSNSYSIRETTYKKVVNMSKVDSREFELSSLTALSPLDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALEVKNIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVEIMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSFLSMKLPISRWQRDLTDSTVLRNMGGGLGHSLLAYKSALQGIAKLQVLYKC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query448 2.2.26 [Sep-21-2011]
P44797456 Adenylosuccinate lyase OS yes no 0.823 0.809 0.615 1e-136
P0AB89456 Adenylosuccinate lyase OS N/A no 0.823 0.809 0.609 1e-135
P0AB90456 Adenylosuccinate lyase OS yes no 0.823 0.809 0.609 1e-135
Q9I0K9456 Adenylosuccinate lyase OS yes no 0.823 0.809 0.613 1e-135
A5IGB3456 Adenylosuccinate lyase OS yes no 0.819 0.804 0.536 1e-117
Q5ZXD1456 Adenylosuccinate lyase OS yes no 0.819 0.804 0.534 1e-117
Q8K9Q7456 Adenylosuccinate lyase OS yes no 0.821 0.807 0.524 1e-113
P57351456 Adenylosuccinate lyase OS yes no 0.821 0.807 0.505 1e-112
Q89AM3460 Adenylosuccinate lyase OS yes no 0.812 0.791 0.519 1e-107
Q54J34466 Adenylosuccinate lyase OS yes no 0.819 0.787 0.490 2e-96
>sp|P44797|PUR8_HAEIN Adenylosuccinate lyase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=purB PE=3 SV=1 Back     alignment and function desciption
 Score =  486 bits (1251), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 227/369 (61%), Positives = 286/369 (77%)

Query: 76  FELSSLTALSPLDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFS 135
            +LS+LTALSPLDGRY  KV  L    SE+GL+ FRV VE++WL KL+   ++TEVP FS
Sbjct: 1   MQLSTLTALSPLDGRYQDKVTPLRAIFSEFGLMKFRVAVEVRWLQKLASTADITEVPPFS 60

Query: 136 EEAKSYLQGLIDGFNMDDALEVKNIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFA 195
            +A ++L G++  FN  DA  +K IER TNHDVKAVEYFLK+K Q++ E+ KV EF HFA
Sbjct: 61  TQANAFLDGIVANFNEADAARIKEIERTTNHDVKAVEYFLKEKIQNEVELVKVSEFIHFA 120

Query: 196 CTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTL 255
           CTSEDINNL+HALML  A ++V+ P   KLI  +  +A++   I +LSRTHGQPASP+T+
Sbjct: 121 CTSEDINNLSHALMLSTARDEVILPEWQKLIDEITRLAEEYKTIPLLSRTHGQPASPSTV 180

Query: 256 GKEISVFAIRLGRERQEISQVEIMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLS 315
           GKE++    RL R+ +++   EI+GK  GAVGNYNAHLSAYP+++W + +E+FV SLG+ 
Sbjct: 181 GKEMANVVYRLKRQFKQLQNAEILGKINGAVGNYNAHLSAYPNIDWHKFSEEFVTSLGIQ 240

Query: 316 FNPYVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEIGSSTMPH 375
           +NPY TQIE HDY+ + F A VRFN I+IDFDRD+WGYI+L +FKQ T AGEIGSSTMPH
Sbjct: 241 WNPYTTQIEPHDYITEFFDAVVRFNTIIIDFDRDLWGYIALNHFKQRTIAGEIGSSTMPH 300

Query: 376 KVNPIDFENSEGNLGKANEDLSFLSMKLPISRWQRDLTDSTVLRNMGGGLGHSLLAYKSA 435
           KVNPIDFENSEGNLG AN  ++ L  KLPISRWQRDLTDSTVLRN+G GLG+ L+AY S 
Sbjct: 301 KVNPIDFENSEGNLGLANAVMTHLGQKLPISRWQRDLTDSTVLRNLGVGLGYCLIAYAST 360

Query: 436 LQGIAKLQV 444
            +GI+KL+V
Sbjct: 361 RKGISKLEV 369

Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (taxid: 71421)
EC: 4EC: .EC: 3EC: .EC: 2EC: .EC: 2
>sp|P0AB89|PUR8_ECOLI Adenylosuccinate lyase OS=Escherichia coli (strain K12) GN=purB PE=1 SV=1 Back     alignment and function description
>sp|P0AB90|PUR8_ECOL6 Adenylosuccinate lyase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=purB PE=3 SV=1 Back     alignment and function description
>sp|Q9I0K9|PUR8_PSEAE Adenylosuccinate lyase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=purB PE=3 SV=1 Back     alignment and function description
>sp|A5IGB3|PUR8_LEGPC Adenylosuccinate lyase OS=Legionella pneumophila (strain Corby) GN=purB PE=3 SV=1 Back     alignment and function description
>sp|Q5ZXD1|PUR8_LEGPH Adenylosuccinate lyase OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=purB PE=1 SV=1 Back     alignment and function description
>sp|Q8K9Q7|PUR8_BUCAP Adenylosuccinate lyase OS=Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) GN=purB PE=3 SV=1 Back     alignment and function description
>sp|P57351|PUR8_BUCAI Adenylosuccinate lyase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) GN=purB PE=3 SV=1 Back     alignment and function description
>sp|Q89AM3|PUR8_BUCBP Adenylosuccinate lyase OS=Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp) GN=purB PE=3 SV=1 Back     alignment and function description
>sp|Q54J34|PUR8_DICDI Adenylosuccinate lyase OS=Dictyostelium discoideum GN=purB PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query448
359486726 553 PREDICTED: adenylosuccinate lyase-like [ 0.984 0.797 0.761 0.0
147854045533 hypothetical protein VITISV_004401 [Viti 0.964 0.810 0.768 0.0
224112593 549 predicted protein [Populus trichocarpa] 0.973 0.794 0.75 0.0
255579132473 adenylosuccinate lyase, putative [Ricinu 0.830 0.786 0.836 0.0
356501123537 PREDICTED: adenylosuccinate lyase-like [ 0.953 0.795 0.735 0.0
17978590537 adenylosuccinate-AMP lyase [Vigna unguic 0.915 0.763 0.759 0.0
356551534532 PREDICTED: adenylosuccinate lyase-like [ 0.888 0.748 0.775 0.0
357509879530 Adenylosuccinate lyase [Medicago truncat 0.946 0.8 0.729 0.0
297835352530 hypothetical protein ARALYDRAFT_898833 [ 0.917 0.775 0.739 0.0
297800214537 hypothetical protein ARALYDRAFT_493016 [ 0.970 0.810 0.699 0.0
>gi|359486726|ref|XP_002276177.2| PREDICTED: adenylosuccinate lyase-like [Vitis vinifera] gi|296086100|emb|CBI31541.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  721 bits (1860), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/461 (76%), Positives = 393/461 (85%), Gaps = 20/461 (4%)

Query: 1   MELGASSRVLSNNTLLRFSPESTFRRRYQV--PVNPTSLNHHQRRFSNASFQLSNSYSIR 58
           ME GASSRVL+ N    F+P S++ +   +    NP    HH    SN SF +S + S R
Sbjct: 1   MEFGASSRVLNPNQRSLFNPISSYHKSIGLFCSYNP----HHP---SNVSFHISAANSRR 53

Query: 59  ETTYKKVVNMSKVDS-----------REFELSSLTALSPLDGRYWSKVKDLAPYMSEYGL 107
           +   K +V  + + S            +FEL+SLTALSPLDGRYWSKVKDLAPYMSEYGL
Sbjct: 54  DCICKAIVKDNSIKSEKGKRMPGEYSHDFELTSLTALSPLDGRYWSKVKDLAPYMSEYGL 113

Query: 108 IYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALEVKNIERVTNHD 167
           I+FRVLVEIKWLLKLS+IPEVTEVP FS+EA+SYLQGL+DGF+M DALEVKNIE+VTNHD
Sbjct: 114 IHFRVLVEIKWLLKLSQIPEVTEVPQFSKEAQSYLQGLVDGFSMSDALEVKNIEKVTNHD 173

Query: 168 VKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIK 227
           VKAVEYFLKQKCQS PEIAKVLEFFHFACTSEDINNLAHALMLKEA+N V+FPVMD+LIK
Sbjct: 174 VKAVEYFLKQKCQSHPEIAKVLEFFHFACTSEDINNLAHALMLKEAMNTVIFPVMDELIK 233

Query: 228 ALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVEIMGKFAGAVG 287
            +C +AKDNA+I+MLSRTHGQPASPTTLGKE+++FA+RL RERQ+ISQVEIMGKFAGAVG
Sbjct: 234 VICNMAKDNAHIAMLSRTHGQPASPTTLGKEMAIFAVRLSRERQDISQVEIMGKFAGAVG 293

Query: 288 NYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVTQIETHDYMAKLFYAFVRFNNILIDFD 347
           NYNAHL AYPD+NWPQI E+FVKSLGLSFNPYVTQIETHDYMAKLF+  ++FNNILIDFD
Sbjct: 294 NYNAHLIAYPDINWPQIAEEFVKSLGLSFNPYVTQIETHDYMAKLFHGIIQFNNILIDFD 353

Query: 348 RDVWGYISLAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSFLSMKLPISR 407
           RD+W YIS+ YFKQ+TKAGEIGSSTMPHKVNPIDFENSEGNLGKAN  LS LSMKLPISR
Sbjct: 354 RDIWSYISVGYFKQITKAGEIGSSTMPHKVNPIDFENSEGNLGKANGGLSHLSMKLPISR 413

Query: 408 WQRDLTDSTVLRNMGGGLGHSLLAYKSALQGIAKLQVLYKC 448
           WQRDLTDSTVLRNMG GLGHSLLAYKS+LQGIAKLQV   C
Sbjct: 414 WQRDLTDSTVLRNMGEGLGHSLLAYKSSLQGIAKLQVNEAC 454

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147854045|emb|CAN81287.1| hypothetical protein VITISV_004401 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224112593|ref|XP_002316236.1| predicted protein [Populus trichocarpa] gi|222865276|gb|EEF02407.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255579132|ref|XP_002530414.1| adenylosuccinate lyase, putative [Ricinus communis] gi|223530063|gb|EEF31984.1| adenylosuccinate lyase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356501123|ref|XP_003519378.1| PREDICTED: adenylosuccinate lyase-like [Glycine max] Back     alignment and taxonomy information
>gi|17978590|gb|AAL48316.1| adenylosuccinate-AMP lyase [Vigna unguiculata] Back     alignment and taxonomy information
>gi|356551534|ref|XP_003544129.1| PREDICTED: adenylosuccinate lyase-like [Glycine max] Back     alignment and taxonomy information
>gi|357509879|ref|XP_003625228.1| Adenylosuccinate lyase [Medicago truncatula] gi|124360652|gb|ABN08641.1| Fumarate lyase; Adenylosuccinate lyase [Medicago truncatula] gi|355500243|gb|AES81446.1| Adenylosuccinate lyase [Medicago truncatula] Back     alignment and taxonomy information
>gi|297835352|ref|XP_002885558.1| hypothetical protein ARALYDRAFT_898833 [Arabidopsis lyrata subsp. lyrata] gi|297331398|gb|EFH61817.1| hypothetical protein ARALYDRAFT_898833 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|297800214|ref|XP_002867991.1| hypothetical protein ARALYDRAFT_493016 [Arabidopsis lyrata subsp. lyrata] gi|297313827|gb|EFH44250.1| hypothetical protein ARALYDRAFT_493016 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query448
TAIR|locus:2013215527 AT1G36280 [Arabidopsis thalian 0.912 0.776 0.734 1e-164
TAIR|locus:2124494536 AT4G18440 [Arabidopsis thalian 0.977 0.817 0.696 3.5e-162
UNIPROTKB|P0AB89456 purB [Escherichia coli K-12 (t 0.821 0.807 0.611 2.2e-121
UNIPROTKB|Q9KSY0456 VC_1126 "Adenylosuccinate lyas 0.821 0.807 0.617 2.8e-121
TIGR_CMR|VC_1126456 VC_1126 "adenylosuccinate lyas 0.821 0.807 0.617 2.8e-121
TIGR_CMR|CPS_2902456 CPS_2902 "adenylosuccinate lya 0.821 0.807 0.611 4.6e-121
TIGR_CMR|SO_2635456 SO_2635 "adenylosuccinate lyas 0.821 0.807 0.622 9.5e-121
TIGR_CMR|CBU_0824461 CBU_0824 "adenylosuccinate lya 0.816 0.793 0.527 2e-102
DICTYBASE|DDB_G0288333466 purB "adenylosuccinate lyase" 0.816 0.785 0.491 3.6e-89
GENEDB_PFALCIPARUM|PFB0295w471 PFB0295w "adenylosuccinate lya 0.821 0.781 0.466 3.8e-85
TAIR|locus:2013215 AT1G36280 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1603 (569.3 bits), Expect = 1.0e-164, P = 1.0e-164
 Identities = 304/414 (73%), Positives = 359/414 (86%)

Query:    32 VNPT-SLNHHQRRFSNASFQLSNSYSIRETTYKKVVNMSKVDSREFELSSLTALSPLDGR 90
             +NP+ SL+H  R     SF +S+ +S++  T  K++ M+   SR+FE+S+LTALSPLDGR
Sbjct:    24 LNPSKSLSHLPR----VSFSVSSPHSLKLMTSTKLIAMASASSRDFEMSNLTALSPLDGR 79

Query:    91 YWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFN 150
             YW KVKDLA  MSE+GLIYFRVLVEIKWL+KLS IP+VTEVPSFS+EA  YLQG+IDGF+
Sbjct:    80 YWGKVKDLASSMSEFGLIYFRVLVEIKWLIKLSNIPQVTEVPSFSKEAHKYLQGIIDGFS 139

Query:   151 MDDALEVKNIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALML 210
             MDDAL+VK IERVTNHDVKAVEYFLKQKC+S PEIAKVLEFFHFACTSEDINNL+HALML
Sbjct:   140 MDDALQVKKIERVTNHDVKAVEYFLKQKCESHPEIAKVLEFFHFACTSEDINNLSHALML 199

Query:   211 KEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRER 270
             +EA++ V+ P MD+LIK++  +AK  A + MLSRTHGQPASPTTLGKE+++FA+RL  ER
Sbjct:   200 QEALSSVILPTMDELIKSISLMAKSFAYVPMLSRTHGQPASPTTLGKEMAIFAVRLSVER 259

Query:   271 QEISQVEIMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVTQIETHDYMA 330
             + +S+ +I GKFAGAVGNYNAH+SAY +++WP + E+FV SLGL+FNPYVTQIE HDYMA
Sbjct:   260 RYLSETKIKGKFAGAVGNYNAHISAYSNIDWPHVAEEFVTSLGLTFNPYVTQIEPHDYMA 319

Query:   331 KLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLG 390
             +LF    +FNN+LIDFDRD+W YISL YFKQ+TKAGEIGSSTMPHKVNPIDFENSEGNLG
Sbjct:   320 RLFNTISQFNNVLIDFDRDIWSYISLGYFKQITKAGEIGSSTMPHKVNPIDFENSEGNLG 379

Query:   391 KANEDLSFLSMKLPISRWQRDLTDSTVLRNMGGGLGHSLLAYKSALQGIAKLQV 444
             KAN +L+FLSMKLPISR QRDLTDSTVLRNMGG LGHSLLAYKSA+QGI KLQV
Sbjct:   380 KANAELAFLSMKLPISRMQRDLTDSTVLRNMGGALGHSLLAYKSAIQGIGKLQV 433
GO:0003824 "catalytic activity" evidence=IEA
GO:0004018 "N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity" evidence=IEA;ISS
GO:0006188 "IMP biosynthetic process" evidence=IEA
GO:0009152 "purine ribonucleotide biosynthetic process" evidence=IEA
GO:0009570 "chloroplast stroma" evidence=IDA
TAIR|locus:2124494 AT4G18440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P0AB89 purB [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KSY0 VC_1126 "Adenylosuccinate lyase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_1126 VC_1126 "adenylosuccinate lyase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_2902 CPS_2902 "adenylosuccinate lyase" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|SO_2635 SO_2635 "adenylosuccinate lyase" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_0824 CBU_0824 "adenylosuccinate lyase" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0288333 purB "adenylosuccinate lyase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
GENEDB_PFALCIPARUM|PFB0295w PFB0295w "adenylosuccinate lyase, putative" [Plasmodium falciparum (taxid:5833)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A5IGB3PUR8_LEGPC4, ., 3, ., 2, ., 20.53670.81910.8048yesno
P0AB89PUR8_ECOLI4, ., 3, ., 2, ., 20.60970.82360.8092N/Ano
P44797PUR8_HAEIN4, ., 3, ., 2, ., 20.61510.82360.8092yesno
Q89AM3PUR8_BUCBP4, ., 3, ., 2, ., 20.51910.81250.7913yesno
Q9I0K9PUR8_PSEAE4, ., 3, ., 2, ., 20.61350.82360.8092yesno
P0AB90PUR8_ECOL64, ., 3, ., 2, ., 20.60970.82360.8092yesno
P57351PUR8_BUCAI4, ., 3, ., 2, ., 20.50540.82140.8070yesno
Q5ZXD1PUR8_LEGPH4, ., 3, ., 2, ., 20.53400.81910.8048yesno
Q8K9Q7PUR8_BUCAP4, ., 3, ., 2, ., 20.52440.82140.8070yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.3.2.20.914
3rd Layer4.3.2LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query448
PLN02848458 PLN02848, PLN02848, adenylosuccinate lyase 0.0
PRK09285456 PRK09285, PRK09285, adenylosuccinate lyase; Provis 0.0
cd01598425 cd01598, PurB, PurB_like adenylosuccinases (adenyl 0.0
cd01595381 cd01595, Adenylsuccinate_lyase_like, Adenylsuccina 1e-123
TIGR00928435 TIGR00928, purB, adenylosuccinate lyase 1e-105
COG0015438 COG0015, PurB, Adenylosuccinate lyase [Nucleotide 1e-104
cd01334325 cd01334, Lyase_I, Lyase class I family; a group of 1e-71
pfam00206312 pfam00206, Lyase_1, Lyase 1e-55
cd01594231 cd01594, Lyase_I_like, Lyase class I_like superfam 9e-35
cd01360387 cd01360, Adenylsuccinate_lyase_1, Adenylsuccinate 2e-33
PRK08540449 PRK08540, PRK08540, adenylosuccinate lyase; Review 1e-25
cd01597437 cd01597, pCLME, prokaryotic 3-carboxy-cis,cis-muco 7e-23
pfam08328115 pfam08328, ASL_C, Adenylosuccinate lyase C-termina 2e-20
PRK06390451 PRK06390, PRK06390, adenylosuccinate lyase; Provis 6e-17
PRK07492435 PRK07492, PRK07492, adenylosuccinate lyase; Provis 6e-17
PRK08470 442 PRK08470, PRK08470, adenylosuccinate lyase; Provis 5e-15
TIGR02426338 TIGR02426, protocat_pcaB, 3-carboxy-cis,cis-mucona 3e-12
PRK07380431 PRK07380, PRK07380, adenylosuccinate lyase; Provis 4e-12
PRK09053452 PRK09053, PRK09053, 3-carboxy-cis,cis-muconate cyc 4e-12
cd03302436 cd03302, Adenylsuccinate_lyase_2, Adenylsuccinate 4e-12
COG1027471 COG1027, AspA, Aspartate ammonia-lyase [Amino acid 8e-09
cd01357450 cd01357, Aspartase, Aspartase 4e-07
COG0165 459 COG0165, ArgH, Argininosuccinate lyase [Amino acid 1e-06
cd01362455 cd01362, Fumarase_classII, Class II fumarases 2e-06
cd01596450 cd01596, Aspartase_like, aspartase (L-aspartate am 2e-06
TIGR00979458 TIGR00979, fumC_II, fumarate hydratase, class II 4e-06
cd01359435 cd01359, Argininosuccinate_lyase, Argininosuccinat 7e-06
COG0114462 COG0114, FumC, Fumarase [Energy production and con 8e-06
PRK05975351 PRK05975, PRK05975, 3-carboxy-cis,cis-muconate cyc 1e-05
PRK12425464 PRK12425, PRK12425, fumarate hydratase; Provisiona 2e-05
PRK12273472 PRK12273, aspA, aspartate ammonia-lyase; Provision 2e-05
PRK00485464 PRK00485, fumC, fumarate hydratase; Reviewed 5e-05
TIGR00838455 TIGR00838, argH, argininosuccinate lyase 7e-05
PLN00134458 PLN00134, PLN00134, fumarate hydratase; Provisiona 1e-04
PRK13353473 PRK13353, PRK13353, aspartate ammonia-lyase; Provi 3e-04
TIGR00839468 TIGR00839, aspA, aspartate ammonia-lyase 0.002
PRK00855459 PRK00855, PRK00855, argininosuccinate lyase; Provi 0.002
>gnl|CDD|178440 PLN02848, PLN02848, adenylosuccinate lyase Back     alignment and domain information 
 Score =  750 bits (1938), Expect = 0.0
 Identities = 289/372 (77%), Positives = 332/372 (89%)

Query: 73  SREFELSSLTALSPLDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVP 132
           SR+ ELS+LTALSPLDGRYWSKVKDL P  SE+GLI +RVLVE+KWLLKLS+IPEVTEVP
Sbjct: 1   SRDLELSNLTALSPLDGRYWSKVKDLRPIFSEFGLIRYRVLVEVKWLLKLSQIPEVTEVP 60

Query: 133 SFSEEAKSYLQGLIDGFNMDDALEVKNIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFF 192
            FS+EA S+L+G+I GF++DDALEVK IERVTNHDVKAVEYFLKQKC+S PE+AKVLEFF
Sbjct: 61  PFSDEANSFLEGIIAGFSVDDALEVKKIERVTNHDVKAVEYFLKQKCKSHPELAKVLEFF 120

Query: 193 HFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASP 252
           HFACTSEDINNL+HALMLKE +N V+ P MD++IKA+  +A + A + MLSRTHGQPASP
Sbjct: 121 HFACTSEDINNLSHALMLKEGVNSVVLPTMDEIIKAISSLAHEFAYVPMLSRTHGQPASP 180

Query: 253 TTLGKEISVFAIRLGRERQEISQVEIMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSL 312
           TTLGKE++ FA RL R+R+++S+V+I GKFAGAVGNYNAH+SAYP+V+WP + E+FV SL
Sbjct: 181 TTLGKEMANFAYRLSRQRKQLSEVKIKGKFAGAVGNYNAHMSAYPEVDWPAVAEEFVTSL 240

Query: 313 GLSFNPYVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEIGSST 372
           GL+FNPYVTQIE HDYMA+LF A  RFNNILIDFDRD+W YISL YFKQ+TKAGE+GSST
Sbjct: 241 GLTFNPYVTQIEPHDYMAELFNAVSRFNNILIDFDRDIWSYISLGYFKQITKAGEVGSST 300

Query: 373 MPHKVNPIDFENSEGNLGKANEDLSFLSMKLPISRWQRDLTDSTVLRNMGGGLGHSLLAY 432
           MPHKVNPIDFENSEGNLG AN +LS LSMKLPISR QRDLTDSTVLRNMG GLGHSLLAY
Sbjct: 301 MPHKVNPIDFENSEGNLGLANAELSHLSMKLPISRMQRDLTDSTVLRNMGVGLGHSLLAY 360

Query: 433 KSALQGIAKLQV 444
           KS L+GI KLQV
Sbjct: 361 KSTLRGIGKLQV 372

Length = 458
>gnl|CDD|236452 PRK09285, PRK09285, adenylosuccinate lyase; Provisional Back     alignment and domain information
>gnl|CDD|176470 cd01598, PurB, PurB_like adenylosuccinases (adenylsuccinate lyase, ASL) Back     alignment and domain information
>gnl|CDD|176467 cd01595, Adenylsuccinate_lyase_like, Adenylsuccinate lyase (ASL)_like Back     alignment and domain information
>gnl|CDD|233192 TIGR00928, purB, adenylosuccinate lyase Back     alignment and domain information
>gnl|CDD|223094 COG0015, PurB, Adenylosuccinate lyase [Nucleotide transport and metabolism] Back     alignment and domain information
>gnl|CDD|176461 cd01334, Lyase_I, Lyase class I family; a group of proteins which catalyze similar beta-elimination reactions Back     alignment and domain information
>gnl|CDD|215787 pfam00206, Lyase_1, Lyase Back     alignment and domain information
>gnl|CDD|176466 cd01594, Lyase_I_like, Lyase class I_like superfamily: contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase, which catalyze similar beta-elimination reactions Back     alignment and domain information
>gnl|CDD|176464 cd01360, Adenylsuccinate_lyase_1, Adenylsuccinate lyase (ASL)_subgroup 1 Back     alignment and domain information
>gnl|CDD|236283 PRK08540, PRK08540, adenylosuccinate lyase; Reviewed Back     alignment and domain information
>gnl|CDD|176469 cd01597, pCLME, prokaryotic 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)_like Back     alignment and domain information
>gnl|CDD|203911 pfam08328, ASL_C, Adenylosuccinate lyase C-terminal Back     alignment and domain information
>gnl|CDD|235792 PRK06390, PRK06390, adenylosuccinate lyase; Provisional Back     alignment and domain information
>gnl|CDD|181000 PRK07492, PRK07492, adenylosuccinate lyase; Provisional Back     alignment and domain information
>gnl|CDD|181437 PRK08470, PRK08470, adenylosuccinate lyase; Provisional Back     alignment and domain information
>gnl|CDD|233863 TIGR02426, protocat_pcaB, 3-carboxy-cis,cis-muconate cycloisomerase Back     alignment and domain information
>gnl|CDD|180954 PRK07380, PRK07380, adenylosuccinate lyase; Provisional Back     alignment and domain information
>gnl|CDD|181627 PRK09053, PRK09053, 3-carboxy-cis,cis-muconate cycloisomerase; Provisional Back     alignment and domain information
>gnl|CDD|176471 cd03302, Adenylsuccinate_lyase_2, Adenylsuccinate lyase (ASL)_subgroup 2 Back     alignment and domain information
>gnl|CDD|223958 COG1027, AspA, Aspartate ammonia-lyase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|176462 cd01357, Aspartase, Aspartase Back     alignment and domain information
>gnl|CDD|223243 COG0165, ArgH, Argininosuccinate lyase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|176465 cd01362, Fumarase_classII, Class II fumarases Back     alignment and domain information
>gnl|CDD|176468 cd01596, Aspartase_like, aspartase (L-aspartate ammonia-lyase) and fumarase class II enzymes Back     alignment and domain information
>gnl|CDD|130052 TIGR00979, fumC_II, fumarate hydratase, class II Back     alignment and domain information
>gnl|CDD|176463 cd01359, Argininosuccinate_lyase, Argininosuccinate lyase (argininosuccinase, ASAL) Back     alignment and domain information
>gnl|CDD|223192 COG0114, FumC, Fumarase [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|168324 PRK05975, PRK05975, 3-carboxy-cis,cis-muconate cycloisomerase; Provisional Back     alignment and domain information
>gnl|CDD|171490 PRK12425, PRK12425, fumarate hydratase; Provisional Back     alignment and domain information
>gnl|CDD|237031 PRK12273, aspA, aspartate ammonia-lyase; Provisional Back     alignment and domain information
>gnl|CDD|234779 PRK00485, fumC, fumarate hydratase; Reviewed Back     alignment and domain information
>gnl|CDD|129918 TIGR00838, argH, argininosuccinate lyase Back     alignment and domain information
>gnl|CDD|215069 PLN00134, PLN00134, fumarate hydratase; Provisional Back     alignment and domain information
>gnl|CDD|183992 PRK13353, PRK13353, aspartate ammonia-lyase; Provisional Back     alignment and domain information
>gnl|CDD|213564 TIGR00839, aspA, aspartate ammonia-lyase Back     alignment and domain information
>gnl|CDD|179143 PRK00855, PRK00855, argininosuccinate lyase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 448
COG0015438 PurB Adenylosuccinate lyase [Nucleotide transport 100.0
PLN02848458 adenylosuccinate lyase 100.0
PRK09285456 adenylosuccinate lyase; Provisional 100.0
cd01598425 PurB PurB_like adenylosuccinases (adenylsuccinate 100.0
cd03302436 Adenylsuccinate_lyase_2 Adenylsuccinate lyase (ASL 100.0
PRK07380431 adenylosuccinate lyase; Provisional 100.0
PRK07492435 adenylosuccinate lyase; Provisional 100.0
PRK08540449 adenylosuccinate lyase; Reviewed 100.0
PRK08470 442 adenylosuccinate lyase; Provisional 100.0
cd01360387 Adenylsuccinate_lyase_1 Adenylsuccinate lyase (ASL 100.0
cd01595381 Adenylsuccinate_lyase_like Adenylsuccinate lyase ( 100.0
PRK06390451 adenylosuccinate lyase; Provisional 100.0
TIGR00928435 purB adenylosuccinate lyase. This family consists 100.0
PRK05975351 3-carboxy-cis,cis-muconate cycloisomerase; Provisi 100.0
TIGR02426338 protocat_pcaB 3-carboxy-cis,cis-muconate cycloisom 100.0
cd01597437 pCLME prokaryotic 3-carboxy-cis,cis-muconate cyclo 100.0
PRK09053452 3-carboxy-cis,cis-muconate cycloisomerase; Provisi 100.0
COG0165 459 ArgH Argininosuccinate lyase [Amino acid transport 100.0
cd01334325 Lyase_I Lyase class I family; a group of proteins 100.0
PRK04833455 argininosuccinate lyase; Provisional 100.0
TIGR00838 455 argH argininosuccinate lyase. This model describes 100.0
PRK06705 502 argininosuccinate lyase; Provisional 100.0
PLN02646 474 argininosuccinate lyase 100.0
cd01359 435 Argininosuccinate_lyase Argininosuccinate lyase (a 100.0
PF00206312 Lyase_1: Lyase; InterPro: IPR022761 This entry rep 100.0
PRK12308 614 bifunctional argininosuccinate lyase/N-acetylgluta 100.0
PRK00855 459 argininosuccinate lyase; Provisional 100.0
PRK00485464 fumC fumarate hydratase; Reviewed 100.0
PRK02186 887 argininosuccinate lyase; Provisional 100.0
cd01357450 Aspartase Aspartase. This subgroup contains Escher 100.0
PRK06389434 argininosuccinate lyase; Provisional 100.0
PRK12273472 aspA aspartate ammonia-lyase; Provisional 100.0
KOG1316 464 consensus Argininosuccinate lyase [Amino acid tran 100.0
PRK13353473 aspartate ammonia-lyase; Provisional 100.0
TIGR00839468 aspA aspartate ammonia-lyase. Fumarate hydratase s 100.0
TIGR00979458 fumC_II fumarate hydratase, class II. Putative fum 100.0
cd01362455 Fumarase_classII Class II fumarases. This subgroup 100.0
cd01596450 Aspartase_like aspartase (L-aspartate ammonia-lyas 100.0
PLN00134458 fumarate hydratase; Provisional 100.0
PRK12425464 fumarate hydratase; Provisional 100.0
PRK14515479 aspartate ammonia-lyase; Provisional 100.0
KOG2700 481 consensus Adenylosuccinate lyase [Nucleotide trans 100.0
COG0114462 FumC Fumarase [Energy production and conversion] 100.0
COG1027471 AspA Aspartate ammonia-lyase [Amino acid transport 100.0
cd01594231 Lyase_I_like Lyase class I_like superfamily: conta 100.0
KOG1317487 consensus Fumarase [Energy production and conversi 100.0
KOG2700481 consensus Adenylosuccinate lyase [Nucleotide trans 99.81
PRK08937216 adenylosuccinate lyase; Provisional 99.79
PF08328115 ASL_C: Adenylosuccinate lyase C-terminal; InterPro 98.76
>COG0015 PurB Adenylosuccinate lyase [Nucleotide transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=2e-79  Score=633.43  Aligned_cols=340  Identities=35%  Similarity=0.456  Sum_probs=312.8

Q ss_pred             cCcCCCCCccchhhhcChhhHHHHHHHHHHHHHHHHhcCCCCCCCCCccHHHHHHHHHHHhcCCccChHhhHHHHhhhCC
Q 013198           87 LDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALEVKNIERVTNH  166 (448)
Q Consensus        87 ~d~ry~~~~~~~~~~fsd~~ll~~~l~vE~A~a~aLa~~~~~giIp~~sa~a~~~l~~~~~~~~~~d~~~i~~~e~~t~h  166 (448)
                      +|+||++  ++|+.+|||++++++|++||+||+++++   ++|+||++.+   +.|.+... +...|+++++++|++|||
T Consensus         1 ~~~RY~~--~em~~ifS~~~~~~~~l~vE~ala~A~a---elG~Ip~~a~---~~I~~~~~-~~~~d~~~i~eie~~t~H   71 (438)
T COG0015           1 LDGRYSS--PEMRAIFSEEAKLRAWLKVEAALARAQA---ELGVIPAEAA---AEIDAAAA-FAEFDLERIKEIEAETGH   71 (438)
T ss_pred             CCcccCc--HHHHHHcCHHHHHHHHHHHHHHHHHHHH---HhCCCCHHHH---HHHHHHhc-ccccCHHHHHHHHHHhCC
Confidence            5899996  7999999999999999999999999999   5999997444   44555433 556799999999999999


Q ss_pred             cHhHHHHHHHHHhccCcccccccCccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccceeecccc
Q 013198          167 DVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTH  246 (448)
Q Consensus       167 Dv~ave~~L~e~~g~~~~~~~~~~~iH~G~SsnDi~~Ta~~L~lr~~l~~~L~~~L~~l~~aL~~lA~~~~dt~m~gRTH  246 (448)
                      ||+|+++.|+++|++     ++++|||+|+|||||+||+++|++|++++ ++.+.|.++++.|.++|.+|+++||+||||
T Consensus        72 dV~a~v~~l~e~~~~-----~~~~~VH~GaTS~DI~Dta~~L~lk~a~~-ii~~~l~~l~~~L~~~A~~~k~t~m~GRTH  145 (438)
T COG0015          72 DVKALVRALAEKVGE-----EASEYVHFGATSQDIIDTALALQLKEALD-LILPDLKRLIEALAELALEHKDTPMLGRTH  145 (438)
T ss_pred             CcHHHHHHHHHhcCc-----ccccceecccchHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCCCeeccccc
Confidence            999999999999985     47899999999999999999999999999 699999999999999999999999999999


Q ss_pred             CCCccccchhhHHHHHHHHHHHHHHHHHccc---ccccccccccccccccccCCCCChhHHHHHHHHhcCCCCCCCCCcc
Q 013198          247 GQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVTQI  323 (448)
Q Consensus       247 ~Q~A~P~T~G~~la~~~~~L~R~~~rL~~~~---~lg~lgGAvGT~~a~~~~~~~~d~~~~~~~la~~LGl~~~~~~~~i  323 (448)
                      ||||+|||||+++++|+++|.|+++||.++.   ..|+++||+||+++++    +.+ ..+++.+++.|||..+|+++|+
T Consensus       146 gq~A~PtT~G~k~A~w~~el~R~~~rL~~~~~~~~~g~i~Ga~Gt~Aa~~----~~~-~~ve~~v~e~LGL~~~p~stq~  220 (438)
T COG0015         146 GQPAEPTTFGKKFANWLAELLRHLERLEEAEERIIVGKIGGAVGTLAALG----DLG-AEVEERVAEKLGLKPAPISTQV  220 (438)
T ss_pred             CCCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccchhhHhhcC----chh-HHHHHHHHHHcCCCCCCCCccc
Confidence            9999999999999999999999999998885   7899999999988764    333 4688999999999999998899


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccee--eccCCCCcccCCCCCCcCchHHHHhhccccchHHHHHHHhh
Q 013198          324 ETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFK--QVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSFLSM  401 (448)
Q Consensus       324 ~~rD~~~el~~~la~~~~~L~kia~Dl~~~~s~G~~~--~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~~g~~~~  401 (448)
                      .+||++++++++++.++++|.||++|||+|+..++++  +++.+||+|||+||||+||+.+|++.|++.+++..+..+..
T Consensus       221 ~~RD~~ae~~~~La~i~~sl~k~a~dIr~l~~~e~~Ev~E~f~~gq~GSSaMPHKrNPi~~E~~~glar~~r~~~~~~~e  300 (438)
T COG0015         221 SPRDRIAEFFSALALLAGSLEKFARDIRLLQRTEVGEVEEPFAKGQVGSSAMPHKRNPIDSENVTGLARVARALVSTLLE  300 (438)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCCCCCCcccCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999865555  88889999999999999999999999988877777777777


Q ss_pred             cCCCcccCCCCcchhhhh-hhhhhHHHHHHHHHHHHhccccceeCcC
Q 013198          402 KLPISRWQRDLTDSTVLR-NMGGGLGHSLLAYKSALQGIAKLQVLYK  447 (448)
Q Consensus       402 ~l~~~~~eRDl~ds~~~r-~l~~~l~~~~~al~~~~~~l~~L~Vn~e  447 (448)
                      ++ ..|||||+++|+++| ++++++.++..+|+.+..++++|.||++
T Consensus       301 ~~-~~whERdlt~ssver~~Lp~~~~~~~~aL~~~~~vl~~L~v~~~  346 (438)
T COG0015         301 NL-VLWHERDLTDSSVERVILPDAFIAADGALNRLLNVLEGLEVNPE  346 (438)
T ss_pred             Hh-HHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCHH
Confidence            88 667999999999999 9999999999999999999999999986

>PLN02848 adenylosuccinate lyase Back     alignment and domain information
>PRK09285 adenylosuccinate lyase; Provisional Back     alignment and domain information
>cd01598 PurB PurB_like adenylosuccinases (adenylsuccinate lyase, ASL) Back     alignment and domain information
>cd03302 Adenylsuccinate_lyase_2 Adenylsuccinate lyase (ASL)_subgroup 2 Back     alignment and domain information
>PRK07380 adenylosuccinate lyase; Provisional Back     alignment and domain information
>PRK07492 adenylosuccinate lyase; Provisional Back     alignment and domain information
>PRK08540 adenylosuccinate lyase; Reviewed Back     alignment and domain information
>PRK08470 adenylosuccinate lyase; Provisional Back     alignment and domain information
>cd01360 Adenylsuccinate_lyase_1 Adenylsuccinate lyase (ASL)_subgroup 1 Back     alignment and domain information
>cd01595 Adenylsuccinate_lyase_like Adenylsuccinate lyase (ASL)_like Back     alignment and domain information
>PRK06390 adenylosuccinate lyase; Provisional Back     alignment and domain information
>TIGR00928 purB adenylosuccinate lyase Back     alignment and domain information
>PRK05975 3-carboxy-cis,cis-muconate cycloisomerase; Provisional Back     alignment and domain information
>TIGR02426 protocat_pcaB 3-carboxy-cis,cis-muconate cycloisomerase Back     alignment and domain information
>cd01597 pCLME prokaryotic 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)_like Back     alignment and domain information
>PRK09053 3-carboxy-cis,cis-muconate cycloisomerase; Provisional Back     alignment and domain information
>COG0165 ArgH Argininosuccinate lyase [Amino acid transport and metabolism] Back     alignment and domain information
>cd01334 Lyase_I Lyase class I family; a group of proteins which catalyze similar beta-elimination reactions Back     alignment and domain information
>PRK04833 argininosuccinate lyase; Provisional Back     alignment and domain information
>TIGR00838 argH argininosuccinate lyase Back     alignment and domain information
>PRK06705 argininosuccinate lyase; Provisional Back     alignment and domain information
>PLN02646 argininosuccinate lyase Back     alignment and domain information
>cd01359 Argininosuccinate_lyase Argininosuccinate lyase (argininosuccinase, ASAL) Back     alignment and domain information
>PF00206 Lyase_1: Lyase; InterPro: IPR022761 This entry represents the N-terminal region of lyase-1 family; PDB: 1DOF_C 1K62_B 1AOS_B 2VD6_D 2J91_B 1C3U_B 1C3C_A 3R6Y_C 3R6V_F 3R6Q_F Back     alignment and domain information
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional Back     alignment and domain information
>PRK00855 argininosuccinate lyase; Provisional Back     alignment and domain information
>PRK00485 fumC fumarate hydratase; Reviewed Back     alignment and domain information
>PRK02186 argininosuccinate lyase; Provisional Back     alignment and domain information
>cd01357 Aspartase Aspartase Back     alignment and domain information
>PRK06389 argininosuccinate lyase; Provisional Back     alignment and domain information
>PRK12273 aspA aspartate ammonia-lyase; Provisional Back     alignment and domain information
>KOG1316 consensus Argininosuccinate lyase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK13353 aspartate ammonia-lyase; Provisional Back     alignment and domain information
>TIGR00839 aspA aspartate ammonia-lyase Back     alignment and domain information
>TIGR00979 fumC_II fumarate hydratase, class II Back     alignment and domain information
>cd01362 Fumarase_classII Class II fumarases Back     alignment and domain information
>cd01596 Aspartase_like aspartase (L-aspartate ammonia-lyase) and fumarase class II enzymes Back     alignment and domain information
>PLN00134 fumarate hydratase; Provisional Back     alignment and domain information
>PRK12425 fumarate hydratase; Provisional Back     alignment and domain information
>PRK14515 aspartate ammonia-lyase; Provisional Back     alignment and domain information
>KOG2700 consensus Adenylosuccinate lyase [Nucleotide transport and metabolism] Back     alignment and domain information
>COG0114 FumC Fumarase [Energy production and conversion] Back     alignment and domain information
>COG1027 AspA Aspartate ammonia-lyase [Amino acid transport and metabolism] Back     alignment and domain information
>cd01594 Lyase_I_like Lyase class I_like superfamily: contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase, which catalyze similar beta-elimination reactions Back     alignment and domain information
>KOG1317 consensus Fumarase [Energy production and conversion] Back     alignment and domain information
>KOG2700 consensus Adenylosuccinate lyase [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK08937 adenylosuccinate lyase; Provisional Back     alignment and domain information
>PF08328 ASL_C: Adenylosuccinate lyase C-terminal; InterPro: IPR013539 This domain is found at the C terminus of adenylosuccinate lyase(ASL; PurB in Escherichia coli) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query448
3gzh_A482 Crystal Structure Of Phosphate-Bound Adenylosuccina 1e-136
2ptq_A462 Crystal Structure Of Escherichia Coli Adenylosuccin 1e-136
2ptr_A462 Crystal Structure Of Escherichia Coli Adenylosuccin 1e-135
2pts_A462 Crystal Structure Of Wild Type Escherichia Coli Ade 1e-134
3bhg_A459 Crystal Structure Of Adenylosuccinate Lyase From Le 1e-114
4efc_A472 Crystal Structure Of Adenylosuccinate Lyase From Tr 2e-99
2qga_B465 Plasmodium Vivax Adenylosuccinate Lyase Pv003765 Wi 6e-88
2hvg_A482 Crystal Structure Of Adenylosuccinate Lyase From Pl 2e-86
1c3c_A429 T. Maritima Adenylosuccinate Lyase Length = 429 1e-18
1c3u_A431 T. Maritima Adenylosuccinate Lyase Length = 431 1e-18
2x75_A431 Staphylococcus Aureus Adenylosuccinate Lyase Length 2e-18
1f1o_A431 Structural Studies Of Adenylosuccinate Lyases Lengt 1e-17
2pfm_A444 Crystal Structure Of Adenylosuccinate Lyase (Purb) 3e-17
4eei_A438 Crystal Structure Of Adenylosuccinate Lyase From Fr 2e-15
1re5_A450 Crystal Structure Of 3-Carboxy-Cis,Cis-Muconate Lac 2e-10
1dof_A403 The Crystal Structure Of Adenylosuccinate Lyase Fro 1e-09
4ffx_A 487 Structural And Biochemical Characterization Of Huma 2e-08
4flc_A 487 Structural And Biochemical Characterization Of Huma 2e-08
2j91_A 503 Crystal Structure Of Human Adenylosuccinate Lyase I 2e-08
2vd6_A 503 Human Adenylosuccinate Lyase In Complex With Its Su 2e-08
3c8t_A451 Crystal Structure Of Fumarate Lyase From Mesorhizob 1e-07
1vdk_A466 Crystal Structure Of Fumarase From Thermus Thermoph 2e-07
1q5n_A454 Crystal Structure Of Beta-Carboxy-Cis,Cis-Muconate 5e-07
1yfm_A488 Recombinant Yeast Fumarase Length = 488 5e-06
1fuo_A467 Fumarase C With Bound Citrate Length = 467 2e-05
2fus_A467 Mutations Of Fumarase That Distinguish Between The 2e-05
1fup_A472 Fumarase With Bound Pyromellitic Acid Length = 472 2e-05
1kq7_A467 E315q Mutant Form Of Fumarase C From E.Coli Length 4e-05
2fel_A359 3-carboxy-cis,cis-muconate Lactonizing Enzyme From 7e-05
1fur_A467 Fumarase Mutant H188n With Bound Substrate L-Malate 2e-04
1yis_A 478 Structural Genomics Of Caenorhabditis Elegans: Aden 3e-04
3tv2_A459 Structure Of A Class Ii Fumarate Hydratase From Bur 4e-04
4hgv_A495 Crystal Structure Of A Fumarate Hydratase Length = 5e-04
3rrp_A471 Crystal Structure Of Fumarate Hydratase Fum From My 9e-04
>pdb|3GZH|A Chain A, Crystal Structure Of Phosphate-Bound Adenylosuccinate Lyase From E. Coli Length = 482 Back     alignment and structure 
Iteration: 1

 Score =  482 bits (1240), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 225/368 (61%), Positives = 289/368 (78%)
Query: 77  ELSSLTALSPLDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSE 136
           ELSSLTA+SP+DGRY  KV  L    SEYGL+ FRV VE++WL KL+    + EVP+F+ 
Sbjct: 28  ELSSLTAVSPVDGRYGDKVSALRGIFSEYGLLKFRVQVEVRWLQKLAAHAAIKEVPAFAA 87
Query: 137 EAKSYLQGLIDGFNMDDALEVKNIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFAC 196
           +A  YL  ++  F+ +DA  +K IER TNHDVKAVEYFLK+K    PE+  V EF HFAC
Sbjct: 88  DAIGYLDAIVANFSEEDAARIKTIERTTNHDVKAVEYFLKEKVAEIPELHAVSEFIHFAC 147
Query: 197 TSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLG 256
           TSEDINNL+HALMLK A ++V+ P   +LI  + ++A    +I +LSRTHGQPA+P+T+G
Sbjct: 148 TSEDINNLSHALMLKTARDEVILPYWRQLIDGIKDLAVQYRDIPLLSRTHGQPATPSTIG 207
Query: 257 KEISVFAIRLGRERQEISQVEIMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSF 316
           KE++  A R+ R+ ++++QVEI+GK  GAVGNYNAH++AYP+V+W Q +E+FV SLG+ +
Sbjct: 208 KEMANVAYRMERQYRQLNQVEILGKINGAVGNYNAHIAAYPEVDWHQFSEEFVTSLGIQW 267
Query: 317 NPYVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEIGSSTMPHK 376
           NPY TQIE HDY+A+LF    RFN ILIDFDRDVWGYI+L +FKQ T AGEIGSSTMPHK
Sbjct: 268 NPYTTQIEPHDYIAELFDCVARFNTILIDFDRDVWGYIALNHFKQKTIAGEIGSSTMPHK 327
Query: 377 VNPIDFENSEGNLGKANEDLSFLSMKLPISRWQRDLTDSTVLRNMGGGLGHSLLAYKSAL 436
           VNPIDFENSEGNLG +N  L  L+ KLP+SRWQRDLTDSTVLRN+G G+G++L+AY+S L
Sbjct: 328 VNPIDFENSEGNLGLSNAVLQHLASKLPVSRWQRDLTDSTVLRNLGVGIGYALIAYQSTL 387
Query: 437 QGIAKLQV 444
           +G++KL+V
Sbjct: 388 KGVSKLEV 395
>pdb|2PTQ|A Chain A, Crystal Structure Of Escherichia Coli Adenylosuccinate Lyase Mutant H171n With Bound Amp And Fumarate Length = 462 Back     alignment and structure
>pdb|2PTR|A Chain A, Crystal Structure Of Escherichia Coli Adenylosuccinate Lyase Mutant H171a With Bound Adenylosuccinate Substrate Length = 462 Back     alignment and structure
>pdb|2PTS|A Chain A, Crystal Structure Of Wild Type Escherichia Coli Adenylosuccinate Lyase Length = 462 Back     alignment and structure
>pdb|3BHG|A Chain A, Crystal Structure Of Adenylosuccinate Lyase From Legionella Pneumophila Length = 459 Back     alignment and structure
>pdb|4EFC|A Chain A, Crystal Structure Of Adenylosuccinate Lyase From Trypanosoma Brucei, Tb427tmp.160.5560 Length = 472 Back     alignment and structure
>pdb|2QGA|B Chain B, Plasmodium Vivax Adenylosuccinate Lyase Pv003765 With Amp Bound Length = 465 Back     alignment and structure
>pdb|2HVG|A Chain A, Crystal Structure Of Adenylosuccinate Lyase From Plasmodium Vivax Length = 482 Back     alignment and structure
>pdb|1C3C|A Chain A, T. Maritima Adenylosuccinate Lyase Length = 429 Back     alignment and structure
>pdb|1C3U|A Chain A, T. Maritima Adenylosuccinate Lyase Length = 431 Back     alignment and structure
>pdb|2X75|A Chain A, Staphylococcus Aureus Adenylosuccinate Lyase Length = 431 Back     alignment and structure
>pdb|1F1O|A Chain A, Structural Studies Of Adenylosuccinate Lyases Length = 431 Back     alignment and structure
>pdb|2PFM|A Chain A, Crystal Structure Of Adenylosuccinate Lyase (Purb) From Bacillus Anthracis Length = 444 Back     alignment and structure
>pdb|4EEI|A Chain A, Crystal Structure Of Adenylosuccinate Lyase From Francisella Tularensis Complexed With Amp And Succinate Length = 438 Back     alignment and structure
>pdb|1RE5|A Chain A, Crystal Structure Of 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From Pseudomonas Putida Length = 450 Back     alignment and structure
>pdb|1DOF|A Chain A, The Crystal Structure Of Adenylosuccinate Lyase From Pyrobaculum Aerophilum: Insights Into Thermal Stability And Human Pathology Length = 403 Back     alignment and structure
>pdb|4FFX|A Chain A, Structural And Biochemical Characterization Of Human Adenylosuccinate Lyase (Adsl) And The R303c Adsl Deficiency Associated Mutation Length = 487 Back     alignment and structure
>pdb|4FLC|A Chain A, Structural And Biochemical Characterization Of Human Adenylosuccinate Lyase (Adsl) And The R303c Adsl Deficiency Associated Mutation Length = 487 Back     alignment and structure
>pdb|2J91|A Chain A, Crystal Structure Of Human Adenylosuccinate Lyase In Complex With Amp Length = 503 Back     alignment and structure
>pdb|2VD6|A Chain A, Human Adenylosuccinate Lyase In Complex With Its Substrate N6-(1,2-Dicarboxyethyl)-Amp, And Its Products Amp And Fumarate. Length = 503 Back     alignment and structure
>pdb|3C8T|A Chain A, Crystal Structure Of Fumarate Lyase From Mesorhizobium Sp. Bnc1 Length = 451 Back     alignment and structure
>pdb|1VDK|A Chain A, Crystal Structure Of Fumarase From Thermus Thermophilus Hb8 Length = 466 Back     alignment and structure
>pdb|1Q5N|A Chain A, Crystal Structure Of Beta-Carboxy-Cis,Cis-Muconate Cycloisomerase (Cmle) From Acinetobacter Calcoaceticus Sp. Adp1 Length = 454 Back     alignment and structure
>pdb|1YFM|A Chain A, Recombinant Yeast Fumarase Length = 488 Back     alignment and structure
>pdb|1FUO|A Chain A, Fumarase C With Bound Citrate Length = 467 Back     alignment and structure
>pdb|2FUS|A Chain A, Mutations Of Fumarase That Distinguish Between The Active Site And A Nearby Dicarboxylic Acid Binding Site Length = 467 Back     alignment and structure
>pdb|1FUP|A Chain A, Fumarase With Bound Pyromellitic Acid Length = 472 Back     alignment and structure
>pdb|1KQ7|A Chain A, E315q Mutant Form Of Fumarase C From E.Coli Length = 467 Back     alignment and structure
>pdb|2FEL|A Chain A, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From Agrobacterium Radiobacter S2 Length = 359 Back     alignment and structure
>pdb|1FUR|A Chain A, Fumarase Mutant H188n With Bound Substrate L-Malate At Putative Activator Site Length = 467 Back     alignment and structure
>pdb|1YIS|A Chain A, Structural Genomics Of Caenorhabditis Elegans: Adenylosuccinate Lyase Length = 478 Back     alignment and structure
>pdb|3TV2|A Chain A, Structure Of A Class Ii Fumarate Hydratase From Burkholderia Pseudomallei Length = 459 Back     alignment and structure
>pdb|4HGV|A Chain A, Crystal Structure Of A Fumarate Hydratase Length = 495 Back     alignment and structure
>pdb|3RRP|A Chain A, Crystal Structure Of Fumarate Hydratase Fum From Mycobacterium Abscessus With Malate Bound Length = 471 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query448
2ptr_A462 Adenylosuccinate lyase; mutant-substrate complex; 1e-178
2qga_B465 Adenylosuccinate lyase; malaria, PV003765, SGC, st 1e-177
3bhg_A459 Adenylosuccinate lyase; structural G PSI-2, protei 1e-175
2pfm_A444 Adenylosuccinate lyase; PURB, purine biosynthesis, 2e-38
4eei_A438 Adenylosuccinate lyase; structural genomics, niaid 6e-38
1dof_A403 Adenylosuccinate lyase; purine biosynthesis; 2.10A 1e-37
1c3c_A429 Protein (adenylosuccinate lyase); purine biosynthe 2e-37
1q5n_A454 3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, a 2e-34
3c8t_A451 Fumarate lyase; structural genomics, PSI-2, protei 2e-33
1yis_A 478 Adenylosuccinate lyase; structural genomics, PSI, 5e-33
1re5_A450 3-carboxy-CIS,CIS-muconate cycloisomerase; homotet 9e-32
2j91_A 503 Adenylosuccinate lyase; disease mutation, adenylos 2e-31
2fel_A359 3-carboxy-CIS,CIS-muconate lactonizing enzyme; bio 3e-31
3e04_A490 Fumarase, fumarate hydratase; TCA cycle, structura 7e-07
1yfm_A488 Fumarase, YFUM; lyase, krebs cycle, active site wa 8e-07
3gtd_A482 Fumarase C, fumarate hydratase class II; structura 8e-07
1fur_A467 Fumarase C, FUMC; hydrolyase, carbon oxygen lyase, 9e-07
1vdk_A466 Fumarase C, fumarate hydratase class II; TCA cycle 1e-06
4adm_A495 Fumarase C, fumarate hydratase class II; lyase, tr 1e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
3r6q_A468 Aspartase; aspartate ammonia lyase, lyase; 2.40A { 7e-06
1jsw_A478 L-aspartase, L-aspartate ammonia-lyase; amino acid 1e-05
3ocf_A478 Fumarate lyase:delta crystallin; fumarase, brucell 2e-05
>2ptr_A Adenylosuccinate lyase; mutant-substrate complex; HET: 2SA; 1.85A {Escherichia coli} PDB: 2ptq_A* 2pts_A 3gzh_A Length = 462 Back     alignment and structure
 Score =  505 bits (1301), Expect = e-178
 Identities = 225/368 (61%), Positives = 288/368 (78%)

Query: 77  ELSSLTALSPLDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSE 136
           ELSSLTA+SP+DGRY  KV  L    SEYGL+ FRV VE++WL KL+    + EVP+F+ 
Sbjct: 2   ELSSLTAVSPVDGRYGDKVSALRGIFSEYGLLKFRVQVEVRWLQKLAAHAAIKEVPAFAA 61

Query: 137 EAKSYLQGLIDGFNMDDALEVKNIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFAC 196
           +A  YL  ++  F+ +DA  +K IER TNHDVKAVEYFLK+K    PE+  V EF HFAC
Sbjct: 62  DAIGYLDAIVASFSEEDAARIKTIERTTNHDVKAVEYFLKEKVAEIPELHAVSEFIHFAC 121

Query: 197 TSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLG 256
           TSEDINNL+HALMLK A ++V+ P   +LI  L ++A    +I +LSRT GQPA+P+T+G
Sbjct: 122 TSEDINNLSHALMLKTARDEVILPYWRQLIDGLKDLAVQYRDIPLLSRTAGQPATPSTIG 181

Query: 257 KEISVFAIRLGRERQEISQVEIMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSF 316
           KE++  A R+ R+ ++++QVEI+GK  GAVGNYNAH++AYP+V+W Q +E+FV SLG+ +
Sbjct: 182 KEMANVAYRMERQYRQLNQVEILGKINGAVGNYNAHIAAYPEVDWHQFSEEFVTSLGIQW 241

Query: 317 NPYVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEIGSSTMPHK 376
           NPY TQIE HDY+A+LF    RFN ILIDFDRDVWGYI+L +FKQ T AGEIGSSTMPHK
Sbjct: 242 NPYTTQIEPHDYIAELFDCVARFNTILIDFDRDVWGYIALNHFKQKTIAGEIGSSTMPHK 301

Query: 377 VNPIDFENSEGNLGKANEDLSFLSMKLPISRWQRDLTDSTVLRNMGGGLGHSLLAYKSAL 436
           VNPIDFENSEGNLG +N  L  L+ KLP+SRWQRDLTDSTVLRN+G G+G++L+AY+S L
Sbjct: 302 VNPIDFENSEGNLGLSNAVLQHLASKLPVSRWQRDLTDSTVLRNLGVGIGYALIAYQSTL 361

Query: 437 QGIAKLQV 444
           +G++KL+V
Sbjct: 362 KGVSKLEV 369
>2qga_B Adenylosuccinate lyase; malaria, PV003765, SGC, structural G consortium; HET: AMP; 2.01A {Plasmodium vivax} PDB: 2hvg_A Length = 465 Back     alignment and structure
>3bhg_A Adenylosuccinate lyase; structural G PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 1.90A {Legionella pneumophila subsp} Length = 459 Back     alignment and structure
>2pfm_A Adenylosuccinate lyase; PURB, purine biosynthesis, B anthracis; 2.00A {Bacillus anthracis} PDB: 1f1o_A 2x75_A* Length = 444 Back     alignment and structure
>4eei_A Adenylosuccinate lyase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: AMP; 1.92A {Francisella tularensis subsp} Length = 438 Back     alignment and structure
>1dof_A Adenylosuccinate lyase; purine biosynthesis; 2.10A {Pyrobaculum aerophilum} SCOP: a.127.1.1 Length = 403 Back     alignment and structure
>1c3c_A Protein (adenylosuccinate lyase); purine biosynthesis; 1.80A {Thermotoga maritima} SCOP: a.127.1.1 PDB: 1c3u_A Length = 429 Back     alignment and structure
>1q5n_A 3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, aromatic degradation; 2.30A {Acinetobacter calcoaceticus} SCOP: a.127.1.1 Length = 454 Back     alignment and structure
>3c8t_A Fumarate lyase; structural genomics, PSI-2, protein structure initiat YORK SGX research center for structural genomics, nysgxrc; 2.20A {Mesorhizobium SP} Length = 451 Back     alignment and structure
>1yis_A Adenylosuccinate lyase; structural genomics, PSI, P structure initiative, southeast collaboratory for structura genomics, secsg; 2.40A {Caenorhabditis elegans} Length = 478 Back     alignment and structure
>1re5_A 3-carboxy-CIS,CIS-muconate cycloisomerase; homotetramer, fumarase class II cycloisomerase, molecular EV isomerase; HET: CIT; 2.60A {Pseudomonas putida} SCOP: a.127.1.1 Length = 450 Back     alignment and structure
>2j91_A Adenylosuccinate lyase; disease mutation, adenylosuccinase, succino AMP-lyase, purin biosynthesis, adenylosuccinase DEFI AMP, ADSL, saicar, purine; HET: AMP; 1.8A {Homo sapiens} PDB: 2vd6_A* Length = 503 Back     alignment and structure
>2fel_A 3-carboxy-CIS,CIS-muconate lactonizing enzyme; biodegradation, sulphonic acids, 3-sulphomuconate; 2.20A {Agrobacterium tumefaciens} PDB: 2fen_A Length = 359 Back     alignment and structure
>3e04_A Fumarase, fumarate hydratase; TCA cycle, structural genomics consortium, alterna initiation, anti-oncogene, cell cycle, disease mutation; 1.95A {Homo sapiens} Length = 490 Back     alignment and structure
>1yfm_A Fumarase, YFUM; lyase, krebs cycle, active site water, hydratase, subunit active site; 2.60A {Saccharomyces cerevisiae} SCOP: a.127.1.1 Length = 488 Back     alignment and structure
>3gtd_A Fumarase C, fumarate hydratase class II; structural genomics, ssgcid, lyase, tricarboxylic acid cycle; 2.40A {Rickettsia prowazekii} Length = 482 Back     alignment and structure
>1fur_A Fumarase C, FUMC; hydrolyase, carbon oxygen lyase, KREB'S cycle enzyme, fumara hydratase; 1.95A {Escherichia coli} SCOP: a.127.1.1 PDB: 1fuo_A* 1yfe_A 1kq7_A* 1fuq_A* 1fup_A* 2fus_A* 3tv2_A Length = 467 Back     alignment and structure
>1vdk_A Fumarase C, fumarate hydratase class II; TCA cycle, riken structural genomics/proteomics in RSGI, structural genomics, lyase; 1.80A {Thermus thermophilus} SCOP: a.127.1.1 Length = 466 Back     alignment and structure
>4adm_A Fumarase C, fumarate hydratase class II; lyase, tricarboxylic acid cycle; HET: SRT; 1.65A {Mycobacterium tuberculosis} PDB: 4adl_A* 3no9_A 4apa_A 4apb_A 3qbp_A 3rd8_A 3rrp_A Length = 495 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3r6q_A Aspartase; aspartate ammonia lyase, lyase; 2.40A {Bacillus SP} PDB: 1j3u_A 3r6v_A 3r6y_A Length = 468 Back     alignment and structure
>1jsw_A L-aspartase, L-aspartate ammonia-lyase; amino acid ammonia-lyase; HET: BGC; 2.70A {Escherichia coli} SCOP: a.127.1.1 Length = 478 Back     alignment and structure
>3ocf_A Fumarate lyase:delta crystallin; fumarase, brucellosis, orchitis, epididymiti mastitis, dehydration of fumarate to malate, KREB'S cycle; 2.10A {Brucella melitensis} PDB: 3oce_A Length = 478 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query448
3bhg_A459 Adenylosuccinate lyase; structural G PSI-2, protei 100.0
2qga_B465 Adenylosuccinate lyase; malaria, PV003765, SGC, st 100.0
2ptr_A462 Adenylosuccinate lyase; mutant-substrate complex; 100.0
4eei_A438 Adenylosuccinate lyase; structural genomics, niaid 100.0
2j91_A 503 Adenylosuccinate lyase; disease mutation, adenylos 100.0
1yis_A 478 Adenylosuccinate lyase; structural genomics, PSI, 100.0
1dof_A403 Adenylosuccinate lyase; purine biosynthesis; 2.10A 100.0
3c8t_A451 Fumarate lyase; structural genomics, PSI-2, protei 100.0
1q5n_A454 3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, a 100.0
1c3c_A429 Protein (adenylosuccinate lyase); purine biosynthe 100.0
1re5_A450 3-carboxy-CIS,CIS-muconate cycloisomerase; homotet 100.0
2fel_A359 3-carboxy-CIS,CIS-muconate lactonizing enzyme; bio 100.0
2pfm_A444 Adenylosuccinate lyase; PURB, purine biosynthesis, 100.0
1k7w_A 468 Delta 2 crystallin; eye lens protein, argininosucc 100.0
1tj7_A 457 Argininosuccinate lyase; crystallin, E. coli, fuma 100.0
2e9f_A 462 Argininosuccinate lyase; alpha helix bundle; HET: 100.0
1jsw_A478 L-aspartase, L-aspartate ammonia-lyase; amino acid 100.0
1fur_A467 Fumarase C, FUMC; hydrolyase, carbon oxygen lyase, 100.0
1vdk_A466 Fumarase C, fumarate hydratase class II; TCA cycle 100.0
1yfm_A488 Fumarase, YFUM; lyase, krebs cycle, active site wa 100.0
3r6q_A468 Aspartase; aspartate ammonia lyase, lyase; 2.40A { 100.0
3ocf_A478 Fumarate lyase:delta crystallin; fumarase, brucell 100.0
4adm_A495 Fumarase C, fumarate hydratase class II; lyase, tr 100.0
3gtd_A482 Fumarase C, fumarate hydratase class II; structura 100.0
4hgv_A495 Fumarase C, fumarate hydratase class II; nysgrc, P 100.0
3e04_A490 Fumarase, fumarate hydratase; TCA cycle, structura 100.0
>3bhg_A Adenylosuccinate lyase; structural G PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 1.90A {Legionella pneumophila subsp} Back     alignment and structure
Probab=100.00  E-value=2e-83  Score=675.06  Aligned_cols=371  Identities=53%  Similarity=0.878  Sum_probs=336.9

Q ss_pred             cccccccccccCccCcCCCCCccchhhhcChhhHHHHHHHHHHHHHHHHhcCCCC-CC--CCCccHHHHHHHHHHHhcCC
Q 013198           74 REFELSSLTALSPLDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEV-TE--VPSFSEEAKSYLQGLIDGFN  150 (448)
Q Consensus        74 ~~~~~~~~~~~sp~d~ry~~~~~~~~~~fsd~~ll~~~l~vE~A~a~aLa~~~~~-gi--Ip~~sa~a~~~l~~~~~~~~  150 (448)
                      .+|+++.||++|||+|||.+++++|+++|||++++++|++||+||+++|++   . |+  ||+.+++++++|.+.++++.
T Consensus         2 ~~~~~~~~~~~s~~~gRy~~~~~~~~~~fsd~~~~~~~l~ve~a~~~ala~---~~gi~~ip~i~~~~~~~i~~~~~~~~   78 (459)
T 3bhg_A            2 NAMTLTALNAISPIDGRYVNKTRALSPYFSEFALTYYRLMVEIKWFESLAA---NDTIPEVPALDNKARKFLSDLISNFN   78 (459)
T ss_dssp             ----CCGGGCSSTTTTTTHHHHGGGTTTSSHHHHHHHHHHHHHHHHHHHHT---CTTCTTSCCCCHHHHHHHHHHHHTCC
T ss_pred             CCCCcccccccCcccccccCChHHHHHHcCHHHHHHHHHHHHHHHHHHHHh---ccCCCCCCCCCHHHHHHHHHHHHHhc
Confidence            468889999999999999987789999999999999999999999999994   6 66  66666788778887777787


Q ss_pred             ccChHhhHHHHhhhCCcHhHHHHHHHHHhccCcccccccCccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013198          151 MDDALEVKNIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALC  230 (448)
Q Consensus       151 ~~d~~~i~~~e~~t~hDv~ave~~L~e~~g~~~~~~~~~~~iH~G~SsnDi~~Ta~~L~lr~~l~~~L~~~L~~l~~aL~  230 (448)
                      .+|++.++++|+.++|||+++|++|+++||+.++++++++|||+|||||||++|+++|++|+++.+.|.+.|.+|+++|.
T Consensus        79 ~~d~~~~~~~e~~~~~Dv~a~e~~l~e~~g~~~~~~~~~~~iH~g~SsnDv~~Ta~~L~lr~~l~~~l~~~L~~l~~~L~  158 (459)
T 3bhg_A           79 ESEAEKIKEFEKQTNHDVKAVEYYLQDKFQENEQLKSCVAFIHFACTSEDINNLAYALMIKQAIAQVIQPTIAEIMGSIT  158 (459)
T ss_dssp             HHHHHHHHHHTTTCSSHHHHHHHHHHHHHTTSTTGGGGGGGTTTTCCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHhcCCChHHHHHHHHHHhcccccCchhhhhhcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67889999999999999999999999999865444568999999999999999999999999998239999999999999


Q ss_pred             HHHHHcccceeeccccCCCccccchhhHHHHHHHHHHHHHHHHHcccccccccccccccccccccCCCCChhHHHHHHHH
Q 013198          231 EIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVEIMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVK  310 (448)
Q Consensus       231 ~lA~~~~dt~m~gRTH~Q~A~P~T~G~~la~~~~~L~R~~~rL~~~~~lg~lgGAvGT~~a~~~~~~~~d~~~~~~~la~  310 (448)
                      ++|++|++++|+||||+|||+||||||+|++|+++|.|+++||.++..+++++|||||+|++...||++||+.+++++++
T Consensus       159 ~~A~~~~~~~m~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~GAvGT~~a~~~~~~~~~~~~~~~~~~~  238 (459)
T 3bhg_A          159 LLGKQHADVAMLSRTHGQPATPTTMGKELVNFVARLKRPQQQLAEVLIPAKFNGAVGNYNAHVAAYPEVDWRKHCANFVT  238 (459)
T ss_dssp             HHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCEECCCCSSSSCHHHHHHCTTSCHHHHHHHHHH
T ss_pred             HHHHHccCCEeeccccCccceechHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccCcccHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999998888889999999998878999999999999999


Q ss_pred             hcCCCCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcceeeccCCCCcccCCCCCCcCchHHHHhhcccc
Q 013198          311 SLGLSFNPYVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLG  390 (448)
Q Consensus       311 ~LGl~~~~~~~~i~~rD~~~el~~~la~~~~~L~kia~Dl~~~~s~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~  390 (448)
                      .|||..+++++|+.+||++++++++++.++++|+|||+|||+|+|.|++++.++++++||||||||+||+.+|+++|+++
T Consensus       239 ~LGl~~~~~~~~~~~rD~~~e~~~~l~~~a~~L~kia~Di~ll~s~~~~~e~~~~~~~GSSiMP~K~NP~~~e~~~g~~~  318 (459)
T 3bhg_A          239 SLGLSFNAYTTQIEPHDGIAEVSQIMVRINNILLDYTQDIWSYISLGYFKQKTIAEEVGSSTMPHKVNPIDFENAEGNLG  318 (459)
T ss_dssp             HTTCEECSSCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEECC------CCSSCCCCCTHHHHHHHHHHH
T ss_pred             HhCCCCCccccchhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceehccCCCCCCCCCCCCCcChHHHHHHHHHHH
Confidence            99999999988999999999999999999999999999999999988888889999999999999999999999999999


Q ss_pred             chHHHHHHHhhcCCCcccCCCCcchhhhhhhhhhHHHHHHHHHHHHhccccceeCcC
Q 013198          391 KANEDLSFLSMKLPISRWQRDLTDSTVLRNMGGGLGHSLLAYKSALQGIAKLQVLYK  447 (448)
Q Consensus       391 la~~~~g~~~~~l~~~~~eRDl~ds~~~r~l~~~l~~~~~al~~~~~~l~~L~Vn~e  447 (448)
                      +++.....+...++.++||||+++|+.+|++++++.++..+++.+.++|++|+||++
T Consensus       319 l~~~~~~~~~~~l~~~~~~rdl~~s~~~r~l~~~~~~~~~~l~~~~~~l~gl~vn~e  375 (459)
T 3bhg_A          319 LSNALFIHFANKLTQSRMQRDLSDSTVLRNLGVAFSYSLIAYHSVAKGNDKLQINKS  375 (459)
T ss_dssp             HHHHHHHHHHHHTTCCSTTCCTHHHHHHTTHHHHHHHHHHHHHHHHHHHTTEEECHH
T ss_pred             HHHHHHHHHHHHHHHHHhcccchhhhhhhhHHHHHHHHHHHHHHHHHHHCcCEECHH
Confidence            888888888888887779999999999999999999999999999999999999985
>2qga_B Adenylosuccinate lyase; malaria, PV003765, SGC, structural G consortium; HET: AMP; 2.01A {Plasmodium vivax} PDB: 2hvg_A Back     alignment and structure
>2ptr_A Adenylosuccinate lyase; mutant-substrate complex; HET: 2SA; 1.85A {Escherichia coli} PDB: 2ptq_A* 2pts_A 3gzh_A Back     alignment and structure
>4eei_A Adenylosuccinate lyase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: AMP; 1.92A {Francisella tularensis subsp} Back     alignment and structure
>2j91_A Adenylosuccinate lyase; disease mutation, adenylosuccinase, succino AMP-lyase, purin biosynthesis, adenylosuccinase DEFI AMP, ADSL, saicar, purine; HET: AMP; 1.8A {Homo sapiens} PDB: 2vd6_A* Back     alignment and structure
>1yis_A Adenylosuccinate lyase; structural genomics, PSI, P structure initiative, southeast collaboratory for structura genomics, secsg; 2.40A {Caenorhabditis elegans} Back     alignment and structure
>1dof_A Adenylosuccinate lyase; purine biosynthesis; 2.10A {Pyrobaculum aerophilum} SCOP: a.127.1.1 Back     alignment and structure
>3c8t_A Fumarate lyase; structural genomics, PSI-2, protein structure initiat YORK SGX research center for structural genomics, nysgxrc; 2.20A {Mesorhizobium SP} Back     alignment and structure
>1q5n_A 3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, aromatic degradation; 2.30A {Acinetobacter calcoaceticus} SCOP: a.127.1.1 Back     alignment and structure
>1c3c_A Protein (adenylosuccinate lyase); purine biosynthesis; 1.80A {Thermotoga maritima} SCOP: a.127.1.1 PDB: 1c3u_A Back     alignment and structure
>1re5_A 3-carboxy-CIS,CIS-muconate cycloisomerase; homotetramer, fumarase class II cycloisomerase, molecular EV isomerase; HET: CIT; 2.60A {Pseudomonas putida} SCOP: a.127.1.1 Back     alignment and structure
>2fel_A 3-carboxy-CIS,CIS-muconate lactonizing enzyme; biodegradation, sulphonic acids, 3-sulphomuconate; 2.20A {Agrobacterium tumefaciens} PDB: 2fen_A Back     alignment and structure
>2pfm_A Adenylosuccinate lyase; PURB, purine biosynthesis, B anthracis; 2.00A {Bacillus anthracis} PDB: 1f1o_A 2x75_A* Back     alignment and structure
>1k7w_A Delta 2 crystallin; eye lens protein, argininosuccinate lyase, enzyme mechanism; HET: AS1; 1.96A {Anas platyrhynchos} SCOP: a.127.1.1 PDB: 1hy1_A 1tju_A 1auw_A 1tjv_A 1tjw_A* 1u16_A* 1u15_A* 1dcn_A* 1xwo_A 1hy0_A 1i0a_A 1aos_A 1k62_A Back     alignment and structure
>1tj7_A Argininosuccinate lyase; crystallin, E. coli, fumarase, ASPA lyase; 2.44A {Escherichia coli} SCOP: a.127.1.1 Back     alignment and structure
>2e9f_A Argininosuccinate lyase; alpha helix bundle; HET: ARG; 2.80A {Thermus thermophilus} Back     alignment and structure
>1jsw_A L-aspartase, L-aspartate ammonia-lyase; amino acid ammonia-lyase; HET: BGC; 2.70A {Escherichia coli} SCOP: a.127.1.1 Back     alignment and structure
>1fur_A Fumarase C, FUMC; hydrolyase, carbon oxygen lyase, KREB'S cycle enzyme, fumara hydratase; 1.95A {Escherichia coli} SCOP: a.127.1.1 PDB: 1fuo_A* 1yfe_A 1kq7_A* 1fuq_A* 1fup_A* 2fus_A* 3tv2_A Back     alignment and structure
>1vdk_A Fumarase C, fumarate hydratase class II; TCA cycle, riken structural genomics/proteomics in RSGI, structural genomics, lyase; 1.80A {Thermus thermophilus} SCOP: a.127.1.1 Back     alignment and structure
>1yfm_A Fumarase, YFUM; lyase, krebs cycle, active site water, hydratase, subunit active site; 2.60A {Saccharomyces cerevisiae} SCOP: a.127.1.1 Back     alignment and structure
>3r6q_A Aspartase; aspartate ammonia lyase, lyase; 2.40A {Bacillus SP} SCOP: a.127.1.1 PDB: 1j3u_A 3r6v_A 3r6y_A Back     alignment and structure
>3ocf_A Fumarate lyase:delta crystallin; fumarase, brucellosis, orchitis, epididymiti mastitis, dehydration of fumarate to malate, KREB'S cycle; 2.10A {Brucella melitensis} PDB: 3oce_A Back     alignment and structure
>4adm_A Fumarase C, fumarate hydratase class II; lyase, tricarboxylic acid cycle; HET: SRT; 1.65A {Mycobacterium tuberculosis} PDB: 4adl_A* 3no9_A 4apa_A 4apb_A 3qbp_A 3rd8_A 3rrp_A Back     alignment and structure
>3gtd_A Fumarase C, fumarate hydratase class II; structural genomics, ssgcid, lyase, tricarboxylic acid cycle; 2.40A {Rickettsia prowazekii} Back     alignment and structure
>4hgv_A Fumarase C, fumarate hydratase class II; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium; 2.09A {Sinorhizobium meliloti} Back     alignment and structure
>3e04_A Fumarase, fumarate hydratase; TCA cycle, structural genomics consortium, alterna initiation, anti-oncogene, cell cycle, disease mutation; 1.95A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 448
d1c3ca_429 a.127.1.1 (A:) Adenylosuccinate lyase {Thermotoga 2e-39
d1dofa_402 a.127.1.1 (A:) Adenylosuccinate lyase {Archaeon Py 1e-36
d1yfma_459 a.127.1.1 (A:) Fumarase {Baker's yeast (Saccharomy 7e-27
d1re5a_448 a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloiso 1e-24
d1q5na_444 a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloiso 1e-22
d1vdka_460 a.127.1.1 (A:) Fumarase {Thermus thermophilus [Tax 4e-22
d1jswa_459 a.127.1.1 (A:) L-aspartate ammonia lyase {Escheric 1e-14
d1fuoa_456 a.127.1.1 (A:) Fumarase {Escherichia coli [TaxId: 1e-11
d1tj7a_ 455 a.127.1.1 (A:) Argininosuccinate lyase/delta-cryst 3e-09
d1tjva_ 449 a.127.1.1 (A:) Argininosuccinate lyase/delta-cryst 5e-08
d1j3ua_462 a.127.1.1 (A:) L-aspartate ammonia lyase {Bacillus 6e-08
d1k62b_ 459 a.127.1.1 (B:) Argininosuccinate lyase/delta-cryst 3e-07
>d1c3ca_ a.127.1.1 (A:) Adenylosuccinate lyase {Thermotoga maritima [TaxId: 2336]} Length = 429 Back     information, alignment and structure

class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Adenylosuccinate lyase
species: Thermotoga maritima [TaxId: 2336]

 Score =  145 bits (365), Expect = 2e-39
 Identities = 68/354 (19%), Positives = 126/354 (35%), Gaps = 27/354 (7%)

Query: 90  RYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGF 149
           RY   +  +    +E       + VE+       ++  + +        +          
Sbjct: 3   RY--SLSPMKDLWTEEAKYRRWLEVELAVTRAYEELGMIPK-----GVTERIRNNAKI-- 53

Query: 150 NMDDALEVKNIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALM 209
              D    K IE  TNHDV A    +         I +   FFH+  TS D+ + A++L 
Sbjct: 54  ---DVELFKKIEEKTNHDVVAFVEGIGSM------IGEDSRFFHYGLTSSDVLDTANSLA 104

Query: 210 LKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRE 269
           L EA   ++  + +     L E+A    +   + RTHG  A PT+ G ++  +   + R 
Sbjct: 105 LVEAGKILLESLKEF-CDVLWEVANRYKHTPTIGRTHGVHAEPTSFGLKVLGWYSEMKRN 163

Query: 270 RQEISQVEIMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVTQIETHDYM 329
            Q + +      +    G    + +  P+V    ++   +K       P  TQ+   D  
Sbjct: 164 VQRLERAIEEVSYGKISGAVGNYANVPPEVEEKALSYLGLK-----PEPVSTQVVPRDRH 218

Query: 330 AKLFYAFVRFNNILIDFDRDV--WGYISLAYFKQVTKAGEIGSSTMPHKVNPIDFENSEG 387
           A            +     ++       +   ++  + G+ GSS MPHK NPI  E   G
Sbjct: 219 AFYLSTLAIVAAGIERIAVEIRHLQRTEVLEVEEPFRKGQRGSSAMPHKKNPITCERLTG 278

Query: 388 NLGKANEDLSFLSMKLPISRWQRDLTDSTVLRNMGGGLGHSLLAYKSALQGIAK 441
                   +      + +   +RD++ S+V R +      +L         + +
Sbjct: 279 LSRMMRAYVDPSLENIALW-HERDISHSSVERYVFPDATQTLYYMIVTATNVVR 331
>d1dofa_ a.127.1.1 (A:) Adenylosuccinate lyase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 402 Back     information, alignment and structure
>d1yfma_ a.127.1.1 (A:) Fumarase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 459 Back     information, alignment and structure
>d1re5a_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) {Pseudomonas putida, strain KT2440 [TaxId: 303]} Length = 448 Back     information, alignment and structure
>d1q5na_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) {Acinetobacter calcoaceticus [TaxId: 471]} Length = 444 Back     information, alignment and structure
>d1vdka_ a.127.1.1 (A:) Fumarase {Thermus thermophilus [TaxId: 274]} Length = 460 Back     information, alignment and structure
>d1jswa_ a.127.1.1 (A:) L-aspartate ammonia lyase {Escherichia coli [TaxId: 562]} Length = 459 Back     information, alignment and structure
>d1fuoa_ a.127.1.1 (A:) Fumarase {Escherichia coli [TaxId: 562]} Length = 456 Back     information, alignment and structure
>d1tj7a_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin {Escherichia coli [TaxId: 562]} Length = 455 Back     information, alignment and structure
>d1tjva_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin {Domestic duck (Anas platyrhynchos), delta-crystallin [TaxId: 8839]} Length = 449 Back     information, alignment and structure
>d1j3ua_ a.127.1.1 (A:) L-aspartate ammonia lyase {Bacillus sp., ym55-1 [TaxId: 1409]} Length = 462 Back     information, alignment and structure
>d1k62b_ a.127.1.1 (B:) Argininosuccinate lyase/delta-crystallin {Human (Homo sapiens) [TaxId: 9606]} Length = 459 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query448
d1dofa_402 Adenylosuccinate lyase {Archaeon Pyrobaculum aerop 100.0
d1c3ca_429 Adenylosuccinate lyase {Thermotoga maritima [TaxId 100.0
d1f1oa_408 Adenylosuccinate lyase {Bacillus subtilis [TaxId: 100.0
d1re5a_448 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) { 100.0
d1q5na_444 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) { 100.0
d1tj7a_ 455 Argininosuccinate lyase/delta-crystallin {Escheric 100.0
d1k62b_ 459 Argininosuccinate lyase/delta-crystallin {Human (H 100.0
d1tjva_ 449 Argininosuccinate lyase/delta-crystallin {Domestic 100.0
d1vdka_460 Fumarase {Thermus thermophilus [TaxId: 274]} 100.0
d1yfma_459 Fumarase {Baker's yeast (Saccharomyces cerevisiae) 100.0
d1j3ua_462 L-aspartate ammonia lyase {Bacillus sp., ym55-1 [T 100.0
d1jswa_459 L-aspartate ammonia lyase {Escherichia coli [TaxId 100.0
d1fuoa_456 Fumarase {Escherichia coli [TaxId: 562]} 100.0
>d1dofa_ a.127.1.1 (A:) Adenylosuccinate lyase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure
class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Adenylosuccinate lyase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=100.00  E-value=2e-70  Score=564.83  Aligned_cols=333  Identities=25%  Similarity=0.269  Sum_probs=274.1

Q ss_pred             ccCccCcCCCCCccchhhhcChhhHHHHHHHHHHHHHHHHhcCCCCCCCCCccHHHHHHHHHHHhcCCccChHhhHHHHh
Q 013198           83 ALSPLDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALEVKNIER  162 (448)
Q Consensus        83 ~~sp~d~ry~~~~~~~~~~fsd~~ll~~~l~vE~A~a~aLa~~~~~giIp~~sa~a~~~l~~~~~~~~~~d~~~i~~~e~  162 (448)
                      .+||||+||+  +++|+++|||++++++|++||.||+++|+   ++|+||+..+++|   .+  ..   .|.+.++++|+
T Consensus         1 ~~sP~d~ry~--~~~~~~ifs~~~~~~~~l~ve~a~a~a~~---e~G~ip~~~a~~i---~~--~~---~d~~~i~~~e~   67 (402)
T d1dofa_           1 HVSPFDWRYG--SEEIRRLFTNEAIINAYLEVERALVCALE---ELGVAERGCCEKV---NK--AS---VSADEVYRLER   67 (402)
T ss_dssp             CCCGGGTTSS--CHHHHTTSSHHHHHHHHHHHHHHHHHHHH---HTTSSCTTHHHHH---HH--CC---CCTTTC-----
T ss_pred             CcCCCccccC--CHHHHHHcChHHHHHHHHHHHHHHHHHHH---HcCCCCHHHHHHH---HH--hc---cCHHHHHHHHH
Confidence            4799999998  47999999999999999999999999999   5899998666654   22  12   35677888999


Q ss_pred             hhCCcHhHHHHHHHHHhccCcccccccCccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccceee
Q 013198          163 VTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISML  242 (448)
Q Consensus       163 ~t~hDv~ave~~L~e~~g~~~~~~~~~~~iH~G~SsnDi~~Ta~~L~lr~~l~~~L~~~L~~l~~aL~~lA~~~~dt~m~  242 (448)
                      .++|||+++|++|++++|        ++|||+|+|||||++|+++|++|+++.. +.+.+..++++|.++|++|++|+|+
T Consensus        68 ~~~hdv~a~~~~l~~~~~--------~~~vH~G~TsnDi~~ta~~l~~r~~~~~-l~~~l~~l~~~L~~~a~~~~~t~m~  138 (402)
T d1dofa_          68 ETGHDILSLVLLLEQKSG--------CRYVHYGATSNDIIDTAWALLIRRALAA-VKEKARAVGDQLASMARKYKTLEMV  138 (402)
T ss_dssp             ---CHHHHHHHHHHHHHC--------CSCTTTTCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTTTCEEE
T ss_pred             HhCCCchHHHHHHhhhhH--------HHHhhccCchHHhhhhHHHHHHHhhhhH-HHHHHHHHHHHHHHHHHhhcccchh
Confidence            999999999999999875        5799999999999999999999999995 9999999999999999999999999


Q ss_pred             ccccCCCccccchhhHHHHHHHHHHHHHHHHHccc--ccccccccccccccccccCCCCChhHHHHHHHHhcCCCCCCCC
Q 013198          243 SRTHGQPASPTTLGKEISVFAIRLGRERQEISQVE--IMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYV  320 (448)
Q Consensus       243 gRTH~Q~A~P~T~G~~la~~~~~L~R~~~rL~~~~--~lg~lgGAvGT~~a~~~~~~~~d~~~~~~~la~~LGl~~~~~~  320 (448)
                      ||||+|||+||||||||++|+++|.|+++||....  ..+++|||+|++++++.    . .+.+.+.++..+|+..++..
T Consensus       139 grTH~Q~A~P~T~G~~~~~~~~~l~r~~~rl~~~~~~~~~~~gGa~g~~~~~~~----~-~~~~~~~l~~~lgl~~~~~~  213 (402)
T d1dofa_         139 GRTHGQWAEPITLGFKFANYYYELYIACRQLALAEEFIRAKIGGAVGTMASWGE----L-GLEVRRRVAERLGLPHHVIT  213 (402)
T ss_dssp             EEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCBCCCCTTSSCGGGGG----G-HHHHHHHHHHHTTCCBCSSC
T ss_pred             hHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccc----h-hhHHHHHHHHHhcccccchh
Confidence            99999999999999999999999999999998765  56778999999877643    2 24577889999999998888


Q ss_pred             CcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcceeeccCCCCcccCCCCCCcCchHHHHhhccccchHHHHHHHh
Q 013198          321 TQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSFLS  400 (448)
Q Consensus       321 ~~i~~rD~~~el~~~la~~~~~L~kia~Dl~~~~s~G~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~~~g~~~  400 (448)
                      +|+.+||++++++++++.++++|+|||+|+++|++.++.++  +++++||||||||+||+.+|++++   +++.+.|+..
T Consensus       214 ~~~~~rd~~~e~~~~L~~~a~~L~kia~Di~~~s~~e~ge~--~e~~~GSS~MP~K~NP~~~E~i~~---~a~~~~g~~~  288 (402)
T d1dofa_         214 TQVAPRESFAVLASALALMAAVFERLAVEIRELSRPEIGEV--VEGGGGSSAMPHKANPTASERIVS---LARYVRALTH  288 (402)
T ss_dssp             SSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTCSE--ESCC---------CCCHHHHHHHH---HHHHHHHHHH
T ss_pred             hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccc--ccccCccccccCCCCchHHHHHhc---hHHHHHHHHH
Confidence            89999999999999999999999999999999987333333  357899999999999999999998   4556666553


Q ss_pred             hc--CCCcccCCCCcchhhhh-hhhhhHHHHHHHHHHHHhccccceeCcC
Q 013198          401 MK--LPISRWQRDLTDSTVLR-NMGGGLGHSLLAYKSALQGIAKLQVLYK  447 (448)
Q Consensus       401 ~~--l~~~~~eRDl~ds~~~r-~l~~~l~~~~~al~~~~~~l~~L~Vn~e  447 (448)
                      ..  ...+++|||+++|..+| .+++++..+..++..+.+++++|+||++
T Consensus       289 ~~~~~~~~~~erd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~vn~e  338 (402)
T d1dofa_         289 VAFENVALWHERDLTNSANERVWIPEALLALDEILTSALRVLKNVYIDEE  338 (402)
T ss_dssp             HHHHTTCCCTTCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECHH
T ss_pred             HHHHhhcccccccchhhhhhhhccchhHHHHHHHHHHHHHHHccCEECHH
Confidence            32  23344999999999998 4667888888889999999999999986
>d1c3ca_ a.127.1.1 (A:) Adenylosuccinate lyase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1f1oa_ a.127.1.1 (A:) Adenylosuccinate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1re5a_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) {Pseudomonas putida, strain KT2440 [TaxId: 303]} Back     information, alignment and structure
>d1q5na_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) {Acinetobacter calcoaceticus [TaxId: 471]} Back     information, alignment and structure
>d1tj7a_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1k62b_ a.127.1.1 (B:) Argininosuccinate lyase/delta-crystallin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tjva_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin {Domestic duck (Anas platyrhynchos), delta-crystallin [TaxId: 8839]} Back     information, alignment and structure
>d1vdka_ a.127.1.1 (A:) Fumarase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1yfma_ a.127.1.1 (A:) Fumarase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1j3ua_ a.127.1.1 (A:) L-aspartate ammonia lyase {Bacillus sp., ym55-1 [TaxId: 1409]} Back     information, alignment and structure
>d1jswa_ a.127.1.1 (A:) L-aspartate ammonia lyase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1fuoa_ a.127.1.1 (A:) Fumarase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure