Citrus Sinensis ID: 013262

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------
Protein Sequence
MLGFTSKTRFTVKKAENHSSTCIFTLFHCRKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILELKGLPFLDAHPEPWMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTAFPHLERSKSGQKH
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcHHHHHcccccccccccccccccccccccccccccccccHHHHHcccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHcccEEEEEEEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHccccccccccccccccccEEEcccccccEEEccccccHHHHHHHHHcccccccEEEEcccccccccccccccHHHHHcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHccccccccccccEEcccccHHHHHHHHHHccccEEEEEccccccccccEEEEEEHHHHHHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcHHHHHcccccccHHHHHHccccccccccEEEEcccccccHHHHHHccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHccccccccccccHHccEEHHHcccccccEEEEccccEHHHHHHHHHccccccccEEcccccccccccccccEEEEEEHHHHHHHHHHHccccccccccccHHHHHHccHHHcccccccccccccccccccccEEccccccccccEccccccHHHHHHHHHHHcccEEEEEccccccccccEEEEEEcHHHHHHHHHHHccccccccccccc
Coil and Loop (DISEMBL)
mlgftsktrftvkkaenhsstcIFTLFHCRKGKMHKLLLALSVSVFTSVCQYclpfladckacdpsfpetcptngrsgnfkqfncpnghyndLATLLLttnddavrnifssntptefqpssiLIFFILYCILGLITFGiavpsglfLPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKtvgdsfnpSIYEIILElkglpfldahpepwmrtltvgelidakppvitlsgieKVSQIVDVLRntthngfpvldegvvppsglaNVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYidlhpltnttpytVIESMSVAKAMVLFRQVGLRHLlvvpkyeaagvspvvgiltrqdlrafniltafphlersksgqkh
Flexible Loop (DISEMBL)
mlgftsktrftvkkaenhsstCIFTLFHCRKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSsntptefqpsSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILELKGLPFLDAHPEPWMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWflqekrrteewevrekfswvelaeregkieeVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVpkyeaagvspVVGILTRQDLRAFNILtafphlersksgqkh
Low Complexity Region (SEG)
MLGFTSKTRFTVKKAENHSSTCIFTLFHCRKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFKQFNCPNGHYndlatlllttnddaVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFleltnnllllpitmivlliAKTVGDSFNPSIYEIILELKGLPFLDAHPEPWMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTAFPHLERSKSGQKH
Disordered region (IsUnstruct)
******************SSTCIFTLFHCRKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILELKGLPFLDAHPEPWMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTAFPH**********
Disordered Region (DISOPRED)
MLGFTSKTRFTVKKAENHSSTCIFTLFHCRKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILELKGLPFLDAHPEPWMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL***************
Disordered Region (DISEMBL)
MLGFTSKTRFTVKKAENHSSTCIFTLFHCRKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILELKGLPFLDAHPEPWMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTAFPHL*********
Disordered Region (DISPRO)
*LGFTSKTRFTVKKAENHSSTCIFTLFHCRKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILELKGLPFLDAHPEPWMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTAFPHL*********
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLGFTSKTRFTVKKAENHSSTCIFTLFHCRKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILELKGLPFLDAHPEPWMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTAFPHLERSKSGQKH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	447	2.2.26 [Sep-21-2011]
P92942	780	Chloride channel protein	yes	no	0.935	0.535	0.811	0.0
P92941	775	Chloride channel protein	no	no	0.917	0.529	0.802	0.0
P60300	765	Putative chloride channel	no	no	0.899	0.525	0.522	1e-114
Q96282	779	Chloride channel protein	no	no	0.890	0.510	0.487	1e-105
P92943	792	Chloride channel protein	no	no	0.859	0.484	0.434	2e-79
Q86AZ6	815	Chloride channel protein	yes	no	0.865	0.474	0.348	2e-55
Q75JF3	757	Chloride channel protein	no	no	0.838	0.495	0.329	3e-52
P51799	803	H(+)/Cl(-) exchange trans	yes	no	0.816	0.454	0.335	9e-52
O70496	803	H(+)/Cl(-) exchange trans	yes	no	0.816	0.454	0.333	2e-51
P51798	805	H(+)/Cl(-) exchange trans	yes	no	0.818	0.454	0.326	9e-50

>sp|P92942|CLCB_ARATH Chloride channel protein CLC-b OS=Arabidopsis thaliana GN=CLC-B PE=1 SV=1

 Score =  686 bits (1769), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/418 (81%), Positives = 374/418 (89%)

Query: 30  RKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFKQFNCPNGH 89
            KGK+HK+LL+L+VS+FTSVC Y LPFLA CK CDPS  E CPTNGRSGNFKQF+CP G+
Sbjct: 363 EKGKIHKVLLSLTVSLFTSVCLYGLPFLAKCKPCDPSIDEICPTNGRSGNFKQFHCPKGY 422

Query: 90  YNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPI 149
           YNDLATLLLTTNDDAVRN+FSSNTP EF   S+ IFF+LYCILGL TFGIA PSGLFLPI
Sbjct: 423 YNDLATLLLTTNDDAVRNLFSSNTPNEFGMGSLWIFFVLYCILGLFTFGIATPSGLFLPI 482

Query: 150 ILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLP 209
           ILMG+AYGR+LG AMGSYT+IDQGLYAVLGAA+LMAGSMRMTVSLCVIFLELTNNLLLLP
Sbjct: 483 ILMGAAYGRMLGAAMGSYTSIDQGLYAVLGAAALMAGSMRMTVSLCVIFLELTNNLLLLP 542

Query: 210 ITMIVLLIAKTVGDSFNPSIYEIILELKGLPFLDAHPEPWMRTLTVGELIDAKPPVITLS 269
           ITMIVLLIAKTVGDSFNPSIY+IIL LKGLPFL+A+PEPWMR LTVGEL DAKPPV+TL 
Sbjct: 543 ITMIVLLIAKTVGDSFNPSIYDIILHLKGLPFLEANPEPWMRNLTVGELGDAKPPVVTLQ 602

Query: 270 GIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ 329
           G+EKVS IVDVL+NTTHN FPVLDE  VP  GLA  ATELHGLILRAHLV  LKK+WFL 
Sbjct: 603 GVEKVSNIVDVLKNTTHNAFPVLDEAEVPQVGLATGATELHGLILRAHLVKVLKKRWFLT 662

Query: 330 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVA 389
           EKRRTEEWEVREKF W ELAERE   ++VA+TS EMEMY+DLHPLTNTTPYTV+E+MSVA
Sbjct: 663 EKRRTEEWEVREKFPWDELAEREDNFDDVAITSAEMEMYVDLHPLTNTTPYTVMENMSVA 722

Query: 390 KAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTAFPHLERSKSGQKH 447
           KA+VLFRQVGLRHLL+VPK +A+G+ PVVGILTRQDLRA+NIL AFP LE+SK G+ H
Sbjct: 723 KALVLFRQVGLRHLLIVPKIQASGMCPVVGILTRQDLRAYNILQAFPLLEKSKGGKTH 780

Voltage-gated chloride channel.
Arabidopsis thaliana (taxid: 3702)

>sp|P92941|CLCA_ARATH Chloride channel protein CLC-a OS=Arabidopsis thaliana GN=CLC-A PE=1 SV=2

 Score =  669 bits (1726), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/416 (80%), Positives = 370/416 (88%), Gaps = 6/416 (1%)

Query: 30  RKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFKQFNCPNGH 89
           +KGK+HK+LL+L VS+FTSVC + LPFLA+CK CDPS  E CPTNGRSGNFKQFNCPNG+
Sbjct: 364 QKGKIHKVLLSLGVSLFTSVCLFGLPFLAECKPCDPSIDEICPTNGRSGNFKQFNCPNGY 423

Query: 90  YNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPI 149
           YNDL+TLLLTTNDDAVRNIFSSNTP EF   S+ IFF LYCILGLITFGIA PSGLFLPI
Sbjct: 424 YNDLSTLLLTTNDDAVRNIFSSNTPNEFGMVSLWIFFGLYCILGLITFGIATPSGLFLPI 483

Query: 150 ILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLP 209
           ILMGSAYGR+LG AMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLP
Sbjct: 484 ILMGSAYGRMLGTAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLP 543

Query: 210 ITMIVLLIAKTVGDSFNPSIYEIILELKGLPFLDAHPEPWMRTLTVGELIDAKPPVITLS 269
           ITM VLLIAKTVGDSFN SIYEIIL LKGLPFL+A+PEPWMR LTVGEL DAKPPV+TL+
Sbjct: 544 ITMFVLLIAKTVGDSFNLSIYEIILHLKGLPFLEANPEPWMRNLTVGELNDAKPPVVTLN 603

Query: 270 GIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ 329
           G+EKV+ IVDVLRNTTHN FPVLD          N  TELHGLILRAHLV  LKK+WFL 
Sbjct: 604 GVEKVANIVDVLRNTTHNAFPVLD------GADQNTGTELHGLILRAHLVKVLKKRWFLN 657

Query: 330 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVA 389
           EKRRTEEWEVREKF+ VELAERE   ++VA+TS EM++Y+DLHPLTNTTPYTV++SMSVA
Sbjct: 658 EKRRTEEWEVREKFTPVELAEREDNFDDVAITSSEMQLYVDLHPLTNTTPYTVVQSMSVA 717

Query: 390 KAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTAFPHLERSKSGQ 445
           KA+VLFR VGLRHLLVVPK +A+G+SPV+GILTRQDLRA+NIL AFPHL++ KSG+
Sbjct: 718 KALVLFRSVGLRHLLVVPKIQASGMSPVIGILTRQDLRAYNILQAFPHLDKHKSGK 773

Voltage-gated chloride channel that could play a role in the regulation of nitrate content.

Arabidopsis thaliana (taxid: 3702)

>sp|P60300|CLCG_ARATH Putative chloride channel-like protein CLC-g OS=Arabidopsis thaliana GN=CBSCLC6 PE=2 SV=2

 Score =  411 bits (1057), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 218/417 (52%), Positives = 293/417 (70%), Gaps = 15/417 (3%)

Query: 30  RKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFKQFNCPNGH 89
            KG   K+LLA ++S+FTS   + LPFLA C+ C     E CPT GRSGNFK++ CP GH
Sbjct: 348 EKGVTWKILLACAISIFTSCLLFGLPFLASCQPCPVDALEECPTIGRSGNFKKYQCPPGH 407

Query: 90  YNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPI 149
           YNDLA+L+  TNDDA++N+FS NT  EF   S+L+FF+    L + ++GI  P+GLF+P+
Sbjct: 408 YNDLASLIFNTNDDAIKNLFSKNTDFEFHYFSVLVFFVTCFFLSIFSYGIVAPAGLFVPV 467

Query: 150 ILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLP 209
           I+ G++YGR +GM +GS +N++ GL+AVLGAAS + G+MRMTVS CVI LELTNNLLLLP
Sbjct: 468 IVTGASYGRFVGMLLGSNSNLNHGLFAVLGAASFLGGTMRMTVSTCVILLELTNNLLLLP 527

Query: 210 ITMIVLLIAKTVGDSFNPSIYEIILELKGLPFLDAHPEPWMRTLTVGELIDAKPPVITLS 269
           + M+VLLI+KTV D FN +IY +I++LKG P+L +H EP+MR L VG+++    P+   +
Sbjct: 528 MMMVVLLISKTVADGFNANIYNLIMKLKGFPYLYSHAEPYMRQLLVGDVVTG--PLQVFN 585

Query: 270 GIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ 329
           GIEKV  IV VL+ T HNGFPV+D    PP   A V   LHGLILRAH++  LKK+ F+ 
Sbjct: 586 GIEKVETIVHVLKTTNHNGFPVVDG---PPLAAAPV---LHGLILRAHILTLLKKRVFMP 639

Query: 330 EKRRTEEWEVREKFSWVELAE----REGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIES 385
                +      +F   E A+    R  KIE+V ++ EE+ MY+DLHP +N +PYTV+E+
Sbjct: 640 SPVACDS-NTLSQFKAEEFAKKGSGRSDKIEDVELSEEELNMYLDLHPFSNASPYTVVET 698

Query: 386 MSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTAFPHLERSK 442
           MS+AKA++LFR+VG+RHLLV+PK   +   PVVGILTR D    +IL   P + RSK
Sbjct: 699 MSLAKALILFREVGIRHLLVIPK--TSNRPPVVGILTRHDFMPEHILGLHPSVSRSK 753

Putative voltage-gated chloride channel.

Arabidopsis thaliana (taxid: 3702)

>sp|Q96282|CLCC_ARATH Chloride channel protein CLC-c OS=Arabidopsis thaliana GN=CLC-C PE=1 SV=1

 Score =  381 bits (978), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 202/414 (48%), Positives = 288/414 (69%), Gaps = 16/414 (3%)

Query: 31  KGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPE-TCPTNGRSGNFKQFNCPNGH 89
           KG   K++L ++VS+ +S C + LP+L+ C  C     E  CP+ GRS  +K F CP  H
Sbjct: 374 KGPRFKIMLVMAVSILSSCCAFGLPWLSQCTPCPIGIEEGKCPSVGRSSIYKSFQCPPNH 433

Query: 90  YNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPI 149
           YNDL++LLL TNDDA+RN+F+S +  EF  S++ IFF+    LG+IT+GIA+PSGLF+P+
Sbjct: 434 YNDLSSLLLNTNDDAIRNLFTSRSENEFHISTLAIFFVAVYCLGIITYGIAIPSGLFIPV 493

Query: 150 ILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLP 209
           IL G++YGRL+G  +G  + +D GL+++LGAAS + G+MRMTVSLCVI LELTNNLL+LP
Sbjct: 494 ILAGASYGRLVGRLLGPVSQLDVGLFSLLGAASFLGGTMRMTVSLCVILLELTNNLLMLP 553

Query: 210 ITMIVLLIAKTVGDSFNPSIYEIILELKGLPFLDAHPEPWMRTLTVGELIDAKPPVITLS 269
           + M+VLLI+KTV D FN  +Y+ I+ +KGLP+++ H EP+MR L   +++     +I+ S
Sbjct: 554 LVMLVLLISKTVADCFNRGVYDQIVTMKGLPYMEDHAEPYMRNLVAKDVVSGA--LISFS 611

Query: 270 GIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ 329
            +EKV  I   L+ T HNGFPV+DE   PP      A+EL G+ LR+HL++ L+ K F +
Sbjct: 612 RVEKVGVIWQALKMTRHNGFPVIDE---PP---FTEASELCGIALRSHLLVLLQGKKFSK 665

Query: 330 EKRRTEEWEVR----EKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIES 385
           ++       +R      F    L +   KIE++ ++ EEMEMY+DLHP+TNT+PYTV+E+
Sbjct: 666 QRTTFGSQILRSCKARDFGKAGLGKGL-KIEDLDLSEEEMEMYVDLHPITNTSPYTVLET 724

Query: 386 MSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTAFPHLE 439
           +S+AKA +LFRQ+GLRHL VVPK    G  P+VGILTR D    ++L  +PH++
Sbjct: 725 LSLAKAAILFRQLGLRHLCVVPK--TPGRPPIVGILTRHDFMPEHVLGLYPHID 776

Voltage-gated chloride channel.

Arabidopsis thaliana (taxid: 3702)

>sp|P92943|CLCD_ARATH Chloride channel protein CLC-d OS=Arabidopsis thaliana GN=CLC-D PE=1 SV=2

 Score =  296 bits (758), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 178/410 (43%), Positives = 254/410 (61%), Gaps = 26/410 (6%)

Query: 30  RKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPET---CPTN-GRSGNFKQFNC 85
           +KG   K++ A  +S  TS   + LP L  C  C  S P++   CP   G  GN+  F C
Sbjct: 354 KKGNRVKIIEACIISCITSAISFGLPLLRKCSPCPESVPDSGIECPRPPGMYGNYVNFFC 413

Query: 86  P-NGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSG 144
             +  YNDLAT+   T DDA+RN+FS+ T  EF   S+L F  ++  L ++TFG AVP+G
Sbjct: 414 KTDNEYNDLATIFFNTQDDAIRNLFSAKTMREFSAQSLLTFLAMFYTLAVVTFGTAVPAG 473

Query: 145 LFLPIILMGSAYGRLLGMAMGSYT---NIDQGLYAVLGAASLMAGSMRMTVSLCVIFLEL 201
            F+P I++GS YGRL+GM +  +    NI++G YA+LGAAS + GSMRMTVSLCVI +E+
Sbjct: 474 QFVPGIMIGSTYGRLVGMFVVRFYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEI 533

Query: 202 TNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILELKGLPFLDAHPEPWMRTLTVGELIDA 261
           TNNL LLP+ M+VLLI+K VGD+FN  +YE+   LKG+P L++ P+  MR +   E   +
Sbjct: 534 TNNLKLLPLIMLVLLISKAVGDAFNEGLYEVQARLKGIPLLESRPKYHMRQMIAKEACQS 593

Query: 262 KPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLA 321
           +  VI+L  + +V+ +  +L +  HNGFPV+D      SG     T + GL+LR+HL++ 
Sbjct: 594 Q-KVISLPRVIRVADVASILGSNKHNGFPVIDH---TRSG----ETLVIGLVLRSHLLVL 645

Query: 322 LKKKWFLQEKRRTEEWEVRE-KFSWVELAEREGK----IEEVAVTSEEMEMYIDLHPLTN 376
           L+ K   Q      +   R  + S+ E A+        IE++ +TS+++EMYIDL P  N
Sbjct: 646 LQSKVDFQHSPLPCDPSARNIRHSFSEFAKPVSSKGLCIEDIHLTSDDLEMYIDLAPFLN 705

Query: 377 TTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDL 426
            +PY V E MS+ K   LFRQ+GLRHL VVP+      S V+G++TR+DL
Sbjct: 706 PSPYVVPEDMSLTKVYNLFRQLGLRHLFVVPR-----PSRVIGLITRKDL 750

Voltage-gated chloride channel.

Arabidopsis thaliana (taxid: 3702)

>sp|Q86AZ6|CLCB_DICDI Chloride channel protein B OS=Dictyostelium discoideum GN=clcB PE=3 SV=1

 Score =  217 bits (552), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 157/451 (34%), Positives = 244/451 (54%), Gaps = 64/451 (14%)

Query: 30  RKGKMHKLLLALSVSVFTSVCQYCLPFLADCK---ACDPSFPETC-PTNGRSGNFKQFNC 85
            K K++K++    + + +SV  +    LADC+         P TC P +  +    QFNC
Sbjct: 374 NKSKLYKMIEVCVIVILSSVVCFFPALLADCRPISGISGLTPGTCDPGDDSTLILNQFNC 433

Query: 86  PNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGL 145
             G+YN +ATL LTT +++++ +FS +T   F   ++L F I Y +L +IT G+ V SG+
Sbjct: 434 AEGYYNPMATLTLTTLENSLQIVFSRSTNI-FTAQTLLTFSIFYYVLTIITSGLYVASGI 492

Query: 146 FLPIILMGSAYGRLLGMAMGSY-TNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNN 204
           F+P++L+GS++GRL+G+ +  Y T+ID  +YA++GAAS+MAGS+RMT+SL VI +ELT  
Sbjct: 493 FIPMMLIGSSWGRLIGIFLSKYFTSIDPSIYALIGAASMMAGSLRMTISLVVIIVELTET 552

Query: 205 L-LLLPITMIVLLIAKTVGDSFNPSIYEIILELKGLPFLDAHPEPWMRTLTVGELIDAKP 263
              LLP+ + V ++ K  GD FN SIYE ++ELK +P+L++ P   +R  TV E +    
Sbjct: 553 TQYLLPVILSV-MVGKWCGDIFNESIYEHLIELKHIPYLNSQPPNHLRKKTVAEAMSTD- 610

Query: 264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELH------------- 310
            V TL  I KV   + +L    HNGFPV+    +  +   N + +L              
Sbjct: 611 -VKTLPEIVKVKTALTILETCPHNGFPVVMLPQLHSNSNLNDSNQLSLSLNLNNNNNNNN 669

Query: 311 -----------------------GLILRAHLVLALKKKWFLQEKRRTEEWEVREK----- 342
                                  GLILR+ L + L++K F   +       + +K     
Sbjct: 670 NNNNNNNNNNNNNNNNNNNNILCGLILRSQLSVLLRRKIFNSPEDLKNIDFISDKGYNLP 729

Query: 343 -----FSWVELAEREGKIEEVA--VTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLF 395
                FS  ELA +   I E++  +T E+++MYIDL P  N    ++    S+++A  +F
Sbjct: 730 IDHTEFSQ-ELASKIPPIHELSKLITKEDLDMYIDLRPYMNFAVVSIKNYSSLSEAYQIF 788

Query: 396 RQVGLRHLLVVPKYEAAGVSPVVGILTRQDL 426
           RQVGLRH++V         + VVG+LTR+DL
Sbjct: 789 RQVGLRHMVV-----INVFNNVVGMLTRKDL 814

Voltage-gated chloride channel. Chloride channels may have several functions including the regulation of cell volume, membrane potential stabilization and signal transduction.

Dictyostelium discoideum (taxid: 44689)

>sp|Q75JF3|CLCC_DICDI Chloride channel protein C OS=Dictyostelium discoideum GN=clcC PE=3 SV=1

 Score =  206 bits (523), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 131/397 (32%), Positives = 214/397 (53%), Gaps = 22/397 (5%)

Query: 36  KLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSG-NFKQFNCPNGHYNDLA 94
           +L  AL VSV TSV  Y   F+ DC+       ET     +S     QF CP+G Y++L 
Sbjct: 376 RLFEALFVSVVTSVVCYYASFIFDCRYQSNIVIETSVCEDQSNTEMVQFFCPDGMYSELG 435

Query: 95  TLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGS 154
           +LL    D A+R ++S  T   F    +L+F ++     + + G+ V  GLF+P++++G+
Sbjct: 436 SLLFGNPDQALRRLYS-RTNNMFTLPPLLVFTLISLFFSIWSSGLWVAGGLFVPMMMVGA 494

Query: 155 AYGRLLGMAMGS-YTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMI 213
            +GRL G  +   +TNID  +YA++G+A++MAG  RMTV + VI +ELT     L   ++
Sbjct: 495 GFGRLFGQTISMWFTNIDSSIYALVGSAAMMAGYCRMTVCIVVIMVELTEGTQYLVPIIL 554

Query: 214 VLLIAKTVGDSFNPSIYEIILELKGLPFLDAHPEPWMRTLTVGELIDAKPPVITLSGIEK 273
            ++I+K VGD FN S+YE ++E K +PFL + P      + + +++     V+ L  + +
Sbjct: 555 AVMISKWVGDFFNESVYEHLMEQKSIPFLQSKPPHSTNNIRISDVMSKN--VVVLPEVCQ 612

Query: 274 VSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRR 333
           V  +V++L +  HN FPV++ G      L        G+ILR H+++ L  + F   +  
Sbjct: 613 VRLLVNILNSNNHNAFPVINSGPYDNQRL------YRGIILRDHILVLLFYRVFY--RGT 664

Query: 334 TEEWEVREKFSWVELAEREGK----IEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVA 389
            EE  + E F + +      K    + E+     E++ +IDL P  N++  T+  + S  
Sbjct: 665 GEEIYLDENFDFDKFTTETSKSPPPLSEMNFDQFELDSFIDLRPYMNSSGVTIHNTFSFV 724

Query: 390 KAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDL 426
           +A  LFR +GLRHL V+        + VVG++TR DL
Sbjct: 725 EAYKLFRNMGLRHLPVIDIN-----NEVVGMVTRNDL 756

Voltage-gated chloride channel. Chloride channels may have several functions including the regulation of cell volume, membrane potential stabilization and signal transduction.

Dictyostelium discoideum (taxid: 44689)

>sp|P51799|CLCN7_RAT H(+)/Cl(-) exchange transporter 7 OS=Rattus norvegicus GN=Clcn7 PE=2 SV=1

 Score =  204 bits (520), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 138/411 (33%), Positives = 226/411 (54%), Gaps = 46/411 (11%)

Query: 36  KLLLALSVSVFTSVCQYCLPFLA-DCKACDPSFPETCPTNGRSGNFK-QFNCPNGHYNDL 93
           +++ A+ V+  T+   + L + + DC+          P  G S ++  Q  C +G YN +
Sbjct: 411 QVIEAMLVAAVTATVAFVLIYSSRDCQ----------PLQGSSMSYPLQLFCADGEYNSM 460

Query: 94  ATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMG 153
           A     T + +V ++F  + P  + P ++ +F ++Y  L   T+G+ V +G+F+P +L+G
Sbjct: 461 AAAFFNTPEKSVVSLFH-DPPGSYNPMTLGLFTLVYFFLACWTYGLTVSAGVFIPSLLIG 519

Query: 154 SAYGRLLGMAM----GSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLP 209
           +A+GRL G++M    G+    D G YA++GAA+ + G +RMT+SL VI +E T+N+    
Sbjct: 520 AAWGRLFGISMSYLTGAAIWADPGKYALMGAAAQLGGIVRMTLSLTVIMMEATSNVTYGF 579

Query: 210 ITMIVLLIAKTVGDSFNPSIYEIILELKGLPFLDAHPEPWMRTLTVGELIDAKPPVITLS 269
             M+VL+ AK VGD F   +Y++ ++L+ +PFL         +LT  E++    PV  L 
Sbjct: 580 PIMLVLMTAKIVGDVFIEGLYDMHIQLQSVPFLHWEAPVTSHSLTAREVMST--PVTCLR 637

Query: 270 GIEKVSQIVDVLRNT--THNGFPVL-DEGVVPPSGLANVATELHGLILRAHLVLALKKKW 326
             EKV  IVDVL +T   HNGFPV+ D G   P+        L GLILR+ L++ LK K 
Sbjct: 638 RREKVGIIVDVLSDTASNHNGFPVVEDVGDTQPA-------RLQGLILRSQLIVLLKHKV 690

Query: 327 FLQE------KRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPY 380
           F++       +RR    + R+ +       R   I+ + V+ +E E  +DL    N +PY
Sbjct: 691 FVERSNMGLVQRRLRLKDFRDAYP------RFPPIQSIHVSQDERECTMDLSEFMNPSPY 744

Query: 381 TVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 431
           TV +  S+ +   LFR +GLRHL+VV  +     + VVG++TR+DL  + +
Sbjct: 745 TVPQEASLPRVFKLFRALGLRHLVVVDNH-----NQVVGLVTRKDLARYRL 790

Mediates the exchange of chloride ions against protons. Functions as antiporter and contributes to the acidification of the lysosome lumen.

Rattus norvegicus (taxid: 10116)

>sp|O70496|CLCN7_MOUSE H(+)/Cl(-) exchange transporter 7 OS=Mus musculus GN=Clcn7 PE=1 SV=1

 Score =  203 bits (516), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 137/411 (33%), Positives = 226/411 (54%), Gaps = 46/411 (11%)

Query: 36  KLLLALSVSVFTSVCQYCLPFLA-DCKACDPSFPETCPTNGRSGNFK-QFNCPNGHYNDL 93
           +++ A+ V+  T+   + L + + DC+          P  G S ++  Q  C +G YN +
Sbjct: 411 QVIEAMLVAAVTATVAFVLIYSSRDCQ----------PLQGSSMSYPLQLFCADGEYNSM 460

Query: 94  ATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMG 153
           A     T + +V ++F  + P  + P ++ +F ++Y  L   T+G+ V +G+F+P +L+G
Sbjct: 461 AAAFFNTPEKSVVSLFH-DPPGSYNPMTLGLFTLVYFFLACWTYGLTVSAGVFIPSLLIG 519

Query: 154 SAYGRLLGMAM----GSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLP 209
           +A+GRL G+++    G+    D G YA++GAA+ + G +RMT+SL VI +E T+N+    
Sbjct: 520 AAWGRLFGISLSYLTGAAIWADPGKYALMGAAAQLGGIVRMTLSLTVIMMEATSNVTYGF 579

Query: 210 ITMIVLLIAKTVGDSFNPSIYEIILELKGLPFLDAHPEPWMRTLTVGELIDAKPPVITLS 269
             M+VL+ AK VGD F   +Y++ ++L+ +PFL         +LT  E++    PV  L 
Sbjct: 580 PIMLVLMTAKIVGDVFIEGLYDMHIQLQSVPFLHWEAPVTSHSLTAREVMST--PVTCLR 637

Query: 270 GIEKVSQIVDVLRNT--THNGFPVL-DEGVVPPSGLANVATELHGLILRAHLVLALKKKW 326
             EKV  IVDVL +T   HNGFPV+ D G   P+        L GLILR+ L++ LK K 
Sbjct: 638 RREKVGIIVDVLSDTASNHNGFPVVEDVGDTQPA-------RLQGLILRSQLIVLLKHKV 690

Query: 327 FLQE------KRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPY 380
           F++       +RR    + R+ +       R   I+ + V+ +E E  +DL    N +PY
Sbjct: 691 FVERSNMGLVQRRLRLKDFRDAYP------RFPPIQSIHVSQDERECTMDLSEFMNPSPY 744

Query: 381 TVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 431
           TV +  S+ +   LFR +GLRHL+VV  +     + VVG++TR+DL  + +
Sbjct: 745 TVPQEASLPRVFKLFRALGLRHLVVVDNH-----NQVVGLVTRKDLARYRL 790

Mediates the exchange of chloride ions against protons. Functions as antiporter and contributes to the acidification of the lysosome lumen.

Mus musculus (taxid: 10090)

>sp|P51798|CLCN7_HUMAN H(+)/Cl(-) exchange transporter 7 OS=Homo sapiens GN=CLCN7 PE=1 SV=2

 Score =  198 bits (503), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 134/410 (32%), Positives = 222/410 (54%), Gaps = 44/410 (10%)

Query: 36  KLLLALSVSVFTSVCQYCLPFLA-DCKACDPSFPETCPTNGRSGNFK-QFNCPNGHYNDL 93
           +++ A+ V+  T+   + L + + DC+          P  G S ++  Q  C +G YN +
Sbjct: 413 QVIEAVLVAAVTATVAFVLIYSSRDCQ----------PLQGGSMSYPLQLFCADGEYNSM 462

Query: 94  ATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMG 153
           A     T + +V ++F  + P  + P ++ +F ++Y  L   T+G+ V +G+F+P +L+G
Sbjct: 463 AAAFFNTPEKSVVSLFH-DPPGSYNPLTLGLFTLVYFFLACWTYGLTVSAGVFIPSLLIG 521

Query: 154 SAYGRLLGMAM----GSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLP 209
           +A+GRL G+++    G+    D G YA++GAA+ + G +RMT+SL VI +E T+N+    
Sbjct: 522 AAWGRLFGISLSYLTGAAIWADPGKYALMGAAAQLGGIVRMTLSLTVIMMEATSNVTYGF 581

Query: 210 ITMIVLLIAKTVGDSFNPSIYEIILELKGLPFLDAHPEPWMRTLTVGELIDAKPPVITLS 269
             M+VL+ AK VGD F   +Y++ ++L+ +PFL         +LT  E++    PV  L 
Sbjct: 582 PIMLVLMTAKIVGDVFIEGLYDMHIQLQSVPFLHWEAPVTSHSLTAREVMST--PVTCLR 639

Query: 270 GIEKVSQIVDVLRNT--THNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWF 327
             EKV  IVDVL +T   HNGFPV++               L GLILR+ L++ LK K F
Sbjct: 640 RREKVGVIVDVLSDTASNHNGFPVVEHAD------DTQPARLQGLILRSQLIVLLKHKVF 693

Query: 328 LQE------KRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYT 381
           ++       +RR    + R+ +       R   I+ + V+ +E E  +DL    N +PYT
Sbjct: 694 VERSNLGLVQRRLRLKDFRDAYP------RFPPIQSIHVSQDERECTMDLSEFMNPSPYT 747

Query: 382 VIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 431
           V +  S+ +   LFR +GLRHL+VV        + VVG++TR+DL  + +
Sbjct: 748 VPQEASLPRVFKLFRALGLRHLVVVDNR-----NQVVGLVTRKDLARYRL 792

Mediates the exchange of chloride ions against protons. Functions as antiporter and contributes to the acidification of the lysosome lumen.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	447
255536929	787	chloride channel clc, putative [Ricinus	0.935	0.531	0.854	0.0
224060241	785	Cl-channel clc-7 [Populus trichocarpa] g	0.957	0.545	0.829	0.0
359488503	789	PREDICTED: chloride channel protein CLC-	0.957	0.542	0.825	0.0
356571521	790	PREDICTED: chloride channel protein CLC-	0.964	0.545	0.802	0.0
301318134	789	chloride channel ClC4 [Vitis vinifera]	0.957	0.542	0.822	0.0
351722961	783	chloride channel [Glycine max] gi|662201	0.948	0.541	0.8	0.0
4768916	786	CLC-Nt2 protein [Nicotiana tabacum]	0.961	0.547	0.789	0.0
15232105	780	chloride channel protein CLC-b [Arabidop	0.935	0.535	0.811	0.0
449441686	789	PREDICTED: chloride channel protein CLC-	0.959	0.543	0.784	0.0
297814954	779	CLC-B [Arabidopsis lyrata subsp. lyrata]	0.935	0.536	0.806	0.0

>gi|255536929|ref|XP_002509531.1| chloride channel clc, putative [Ricinus communis] gi|223549430|gb|EEF50918.1| chloride channel clc, putative [Ricinus communis]

 Score =  728 bits (1878), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/418 (85%), Positives = 391/418 (93%)

Query: 30  RKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFKQFNCPNGH 89
           +KGKMHKLLL+L+VS+FTSVC Y LPFLA C+ CDPS  E CPTN RSGNFKQFNCP GH
Sbjct: 369 QKGKMHKLLLSLTVSLFTSVCLYGLPFLAKCQPCDPSVTELCPTNDRSGNFKQFNCPKGH 428

Query: 90  YNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPI 149
           YNDLATLLLTTNDDAVRNIFSSNTP EFQP+++LIFF LYC+LGL TFGIAVPSGLFLPI
Sbjct: 429 YNDLATLLLTTNDDAVRNIFSSNTPHEFQPATLLIFFALYCVLGLFTFGIAVPSGLFLPI 488

Query: 150 ILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLP 209
           ILMGSAYGRLLG+AMGSYTN+DQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLP
Sbjct: 489 ILMGSAYGRLLGVAMGSYTNLDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLP 548

Query: 210 ITMIVLLIAKTVGDSFNPSIYEIILELKGLPFLDAHPEPWMRTLTVGELIDAKPPVITLS 269
           ITMIVLLIAKTVGDSFNPSIYEIIL LKGLPFLDA+PEPWMR LTVGEL DAKPP++TL 
Sbjct: 549 ITMIVLLIAKTVGDSFNPSIYEIILHLKGLPFLDANPEPWMRNLTVGELADAKPPLVTLC 608

Query: 270 GIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ 329
           G+EKVS+IVDVL+NTT+NGFPV+D+GV+PP GLA  ATELHGLILRAHLV A+KKKWFL+
Sbjct: 609 GVEKVSRIVDVLKNTTYNGFPVVDDGVIPPVGLATGATELHGLILRAHLVQAIKKKWFLR 668

Query: 330 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVA 389
           EKRRTEEWEVR+KF+WV+LAERE KIEEVAVT +EMEMY+DLHPLTNTTPYTV+ESMSVA
Sbjct: 669 EKRRTEEWEVRQKFTWVDLAERELKIEEVAVTRDEMEMYVDLHPLTNTTPYTVVESMSVA 728

Query: 390 KAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTAFPHLERSKSGQKH 447
           KAMVLFRQVGLRHLL+VPKYEA+GV PVVGILTRQDLRA+NIL+AFPHL RSK  +K 
Sbjct: 729 KAMVLFRQVGLRHLLIVPKYEASGVPPVVGILTRQDLRAYNILSAFPHLARSKDREKR 786

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224060241|ref|XP_002300101.1| Cl-channel clc-7 [Populus trichocarpa] gi|222847359|gb|EEE84906.1| Cl-channel clc-7 [Populus trichocarpa]

 Score =  714 bits (1842), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/429 (82%), Positives = 387/429 (90%), Gaps = 1/429 (0%)

Query: 18  HSSTCIFTLFHCRKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRS 77
           H    ++ L + +KG++HKLLLAL+VS+FTSVC Y LPFLA C+ CDPS  E CPTN RS
Sbjct: 356 HKVLVVYNLIN-QKGRIHKLLLALTVSIFTSVCLYGLPFLAKCQPCDPSVQEICPTNSRS 414

Query: 78  GNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITF 137
           GNFKQFNCP+GHYNDLATLL TTNDDAVRNIFSSN   EFQP+S+LIFF+LYCILGL TF
Sbjct: 415 GNFKQFNCPDGHYNDLATLLFTTNDDAVRNIFSSNALKEFQPASLLIFFVLYCILGLFTF 474

Query: 138 GIAVPSGLFLPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVI 197
           GIAVPSGLFLPIILMGSAYGRLLG+AMGSYT IDQGLYAVLGAASLMAGSMRMTVSLCVI
Sbjct: 475 GIAVPSGLFLPIILMGSAYGRLLGIAMGSYTKIDQGLYAVLGAASLMAGSMRMTVSLCVI 534

Query: 198 FLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILELKGLPFLDAHPEPWMRTLTVGE 257
           FLELTNNLLLLPITMIVLLI+KTVGDSFNPSIYEIIL+LKGLPFLDA+PEPWMR LTV E
Sbjct: 535 FLELTNNLLLLPITMIVLLISKTVGDSFNPSIYEIILDLKGLPFLDANPEPWMRNLTVAE 594

Query: 258 LIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAH 317
           L DAKPPV+TL G+EKVS+IV+VL NTTHNGFPV+DEGVVP  GLA  ATELHGLILRAH
Sbjct: 595 LADAKPPVVTLCGVEKVSRIVEVLENTTHNGFPVVDEGVVPLMGLATGATELHGLILRAH 654

Query: 318 LVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNT 377
           LV  LKKKWFL EKRRTEEWEVREKF WVELAER+G IEEVAVT  EMEMY+DLHPLTNT
Sbjct: 655 LVQVLKKKWFLPEKRRTEEWEVREKFDWVELAERDGTIEEVAVTRNEMEMYVDLHPLTNT 714

Query: 378 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTAFPH 437
           TPYTV+ESMSVAKAMVLFRQVGLRH+L++PKY+AAGV PVVGILTRQDLRA NIL AFPH
Sbjct: 715 TPYTVVESMSVAKAMVLFRQVGLRHMLILPKYQAAGVPPVVGILTRQDLRAHNILLAFPH 774

Query: 438 LERSKSGQK 446
           L+ SKS +K
Sbjct: 775 LQGSKSREK 783

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488503|ref|XP_002273594.2| PREDICTED: chloride channel protein CLC-b [Vitis vinifera] gi|296082356|emb|CBI21361.3| unnamed protein product [Vitis vinifera]

 Score =  703 bits (1815), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/429 (82%), Positives = 392/429 (91%), Gaps = 1/429 (0%)

Query: 18  HSSTCIFTLFHCRKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRS 77
           H    ++ L + +KGK+HKLLL+LSVS+FTS+C YCLPFLA C  CD S  ETCPTNGR+
Sbjct: 360 HKVLRVYNLIN-QKGKIHKLLLSLSVSLFTSICLYCLPFLATCSPCDSSITETCPTNGRT 418

Query: 78  GNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITF 137
           GNFKQFNCP+G+YNDLA+LL TTNDDAVRNIFS+NT TEF P S+LIFF LY ILGLITF
Sbjct: 419 GNFKQFNCPDGYYNDLASLLFTTNDDAVRNIFSTNTATEFHPLSLLIFFGLYYILGLITF 478

Query: 138 GIAVPSGLFLPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVI 197
           GIAVPSGLFLPIILMGSAYGRLLG+AMGSYT IDQGLYAVLGAASLMAGSMRMTVSLCVI
Sbjct: 479 GIAVPSGLFLPIILMGSAYGRLLGIAMGSYTKIDQGLYAVLGAASLMAGSMRMTVSLCVI 538

Query: 198 FLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILELKGLPFLDAHPEPWMRTLTVGE 257
           FLELTNNLLLLPITMIVLLIAK+VGD  NPSIY+IIL LKGLPFLDA+PEPWMR LTVGE
Sbjct: 539 FLELTNNLLLLPITMIVLLIAKSVGDCINPSIYDIILHLKGLPFLDANPEPWMRNLTVGE 598

Query: 258 LIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAH 317
           L DAKPPV+TL G+EKV++IVDVLRNTTHNGFPV+DEGVVP  GLA  ATELHG++LRAH
Sbjct: 599 LADAKPPVVTLRGVEKVARIVDVLRNTTHNGFPVVDEGVVPRVGLAIGATELHGIVLRAH 658

Query: 318 LVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNT 377
           LV  LKKKWFLQE+RRTEEWEVREKF+W+ELAEREGK EEVAVT++EMEMY+DLHPLTNT
Sbjct: 659 LVKVLKKKWFLQERRRTEEWEVREKFTWIELAEREGKFEEVAVTNDEMEMYVDLHPLTNT 718

Query: 378 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTAFPH 437
           TPYTV+ESMSVAKAMVLFRQVGLRH+L+VPKY+AAGVSPVVGILTRQDLRA+NILTAFPH
Sbjct: 719 TPYTVVESMSVAKAMVLFRQVGLRHMLIVPKYQAAGVSPVVGILTRQDLRAYNILTAFPH 778

Query: 438 LERSKSGQK 446
           L +SK  +K
Sbjct: 779 LAKSKEREK 787

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356571521|ref|XP_003553925.1| PREDICTED: chloride channel protein CLC-b-like [Glycine max]

 Score =  701 bits (1808), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/435 (80%), Positives = 393/435 (90%), Gaps = 4/435 (0%)

Query: 17  NHSSTCIFTLFHC--RKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPE-TCPT 73
           NH    +  L++   +KG++HKLLL+L+V++FTS+C+Y LPFLA C  CDPS PE TCPT
Sbjct: 355 NHVLHKVLRLYNLINQKGRIHKLLLSLAVALFTSMCEYGLPFLAKCTPCDPSLPESTCPT 414

Query: 74  NGRSGNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILG 133
           NGRSGNFKQFNCP G+YNDLATLLLTTNDDAVRNIFS+NTP E+QP S++IFF+LYCILG
Sbjct: 415 NGRSGNFKQFNCPPGYYNDLATLLLTTNDDAVRNIFSTNTPQEYQPLSLVIFFVLYCILG 474

Query: 134 LITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVS 193
           LITFGIAVPSGLFLPIILMGS YGRLLG+ MG +TNIDQGL+AVLGAASLMAGSMRMTVS
Sbjct: 475 LITFGIAVPSGLFLPIILMGSGYGRLLGIYMGPHTNIDQGLFAVLGAASLMAGSMRMTVS 534

Query: 194 LCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILELKGLPFLDAHPEPWMRTL 253
           LCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIIL LKGLPF+DA+PEPWMR L
Sbjct: 535 LCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILHLKGLPFMDANPEPWMRNL 594

Query: 254 TVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPP-SGLANVATELHGL 312
           TVGEL+D KP V+TL G+EKV++IVDVL+NTTHN FPV+D+GVVPP  G AN  TELHGL
Sbjct: 595 TVGELVDVKPSVVTLHGVEKVAKIVDVLKNTTHNAFPVMDDGVVPPVVGQANGGTELHGL 654

Query: 313 ILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLH 372
           ILRAHL+ ALKKKWFL+E+RRTEEWEVREKF+WVELAEREG IEEVAVTSEEMEM++DLH
Sbjct: 655 ILRAHLIQALKKKWFLKERRRTEEWEVREKFTWVELAEREGSIEEVAVTSEEMEMFVDLH 714

Query: 373 PLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL 432
           PLTNTTP+TV+ESMSVAKAM+LFRQVGLRHLLVVPKY+A+GVSPV+GILTRQDL A NIL
Sbjct: 715 PLTNTTPFTVLESMSVAKAMILFRQVGLRHLLVVPKYQASGVSPVIGILTRQDLLAHNIL 774

Query: 433 TAFPHLERSKSGQKH 447
           T FPHL  SK  +K 
Sbjct: 775 TVFPHLAISKGREKR 789

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|301318134|gb|ADK66982.1| chloride channel ClC4 [Vitis vinifera]

 Score =  701 bits (1808), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/429 (82%), Positives = 391/429 (91%), Gaps = 1/429 (0%)

Query: 18  HSSTCIFTLFHCRKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRS 77
           H    ++ L + +KGK+HKLLL+LSVS+FTS+C YCLPFLA C  CD S  ETCPTNGR+
Sbjct: 360 HKVLRVYNLIN-QKGKIHKLLLSLSVSLFTSICLYCLPFLATCSPCDSSITETCPTNGRT 418

Query: 78  GNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITF 137
           GNFKQFNCP+G+YNDLA+LL TTNDDAVRNIFS+NT TEF P S+LIFF LY ILGLITF
Sbjct: 419 GNFKQFNCPDGYYNDLASLLFTTNDDAVRNIFSTNTATEFHPLSLLIFFGLYYILGLITF 478

Query: 138 GIAVPSGLFLPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVI 197
           GIAVPSGLFLPIILMGSAYGRLLG+AMGSYT IDQGLYAVLGAASLMAGSMRMTVSLCVI
Sbjct: 479 GIAVPSGLFLPIILMGSAYGRLLGIAMGSYTKIDQGLYAVLGAASLMAGSMRMTVSLCVI 538

Query: 198 FLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILELKGLPFLDAHPEPWMRTLTVGE 257
           FLELTNNLLLLPITMIVLLIAK+VGD  NPSIY+IIL LKGLPFLDA+PEPWMR LTVGE
Sbjct: 539 FLELTNNLLLLPITMIVLLIAKSVGDCINPSIYDIILHLKGLPFLDANPEPWMRNLTVGE 598

Query: 258 LIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAH 317
           L DAKP V+TL G+EKV++IVDVLRNTTHNGFPV+DEGVVP  GLA  ATELHG++LRAH
Sbjct: 599 LADAKPQVVTLRGVEKVARIVDVLRNTTHNGFPVVDEGVVPRVGLAIGATELHGIVLRAH 658

Query: 318 LVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNT 377
           LV  LKKKWFLQE+RRTEEWEVREKF+W+ELAEREGK EEVAVT++EMEMY+DLHPLTNT
Sbjct: 659 LVKVLKKKWFLQERRRTEEWEVREKFTWIELAEREGKFEEVAVTNDEMEMYVDLHPLTNT 718

Query: 378 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTAFPH 437
           TPYTV+ESMSVAKAMVLFRQVGLRH+L+VPKY+AAGVSPVVGILTRQDLRA+NILTAFPH
Sbjct: 719 TPYTVVESMSVAKAMVLFRQVGLRHMLIVPKYQAAGVSPVVGILTRQDLRAYNILTAFPH 778

Query: 438 LERSKSGQK 446
           L +SK  +K
Sbjct: 779 LAKSKEREK 787

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722961|ref|NP_001236494.1| chloride channel [Glycine max] gi|66220164|gb|AAY43007.1| chloride channel [Glycine max]

 Score =  699 bits (1805), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/425 (80%), Positives = 385/425 (90%), Gaps = 1/425 (0%)

Query: 18  HSSTCIFTLFHCRKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRS 77
           H    ++ L + +KGKM+KLLL+LSV++FTS CQY LPFLA C  CDPS  + CPTNGRS
Sbjct: 358 HKVLRVYNLIN-QKGKMYKLLLSLSVAIFTSACQYGLPFLAKCTPCDPSLSDVCPTNGRS 416

Query: 78  GNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITF 137
           GNFKQFNCP G+YNDLATLLLTTNDDAVRNIFS+NTP E+QPSSI+IFF LYCILGLITF
Sbjct: 417 GNFKQFNCPKGYYNDLATLLLTTNDDAVRNIFSTNTPLEYQPSSIIIFFALYCILGLITF 476

Query: 138 GIAVPSGLFLPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVI 197
           GIAVPSGLFLPIILMGS YGRLLG+ MG +TNIDQGL+AVLGAASLMAGSMRMTVSLCVI
Sbjct: 477 GIAVPSGLFLPIILMGSGYGRLLGILMGPHTNIDQGLFAVLGAASLMAGSMRMTVSLCVI 536

Query: 198 FLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILELKGLPFLDAHPEPWMRTLTVGE 257
           FLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIIL LKGLPF+DA+PEPWMR LTVGE
Sbjct: 537 FLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILHLKGLPFMDANPEPWMRNLTVGE 596

Query: 258 LIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAH 317
           L+D KP V++  G+EKV+ IV+ L+NTTHNGFPV+D G+VP +G+AN ATELHG+ILRAH
Sbjct: 597 LVDVKPAVVSFKGVEKVANIVNALKNTTHNGFPVMDCGLVPTTGVANEATELHGIILRAH 656

Query: 318 LVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNT 377
           L+   KKKWFL+E+RRTEEWEVREKF+WVELAEREG IE+VAVT EEMEM++DLHPLTNT
Sbjct: 657 LIQVRKKKWFLKERRRTEEWEVREKFTWVELAEREGNIEDVAVTKEEMEMFVDLHPLTNT 716

Query: 378 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTAFPH 437
           TP+TV+ESMSVAKAMVLFRQVGLRH+LVVPKY+A+GVSPV+GILTRQDL A+NILT FPH
Sbjct: 717 TPFTVLESMSVAKAMVLFRQVGLRHMLVVPKYQASGVSPVIGILTRQDLLAYNILTVFPH 776

Query: 438 LERSK 442
           L +SK
Sbjct: 777 LAKSK 781

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4768916|gb|AAD29679.1|AF133209_1 CLC-Nt2 protein [Nicotiana tabacum]

 Score =  691 bits (1782), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/432 (78%), Positives = 384/432 (88%), Gaps = 2/432 (0%)

Query: 17  NHSSTCIFTLFHC--RKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTN 74
           NH    I  L++    KGK+HK+LLALSVS+FTS+C Y LPFLA CK CDPS P +CP  
Sbjct: 353 NHVLHKILRLYNLINEKGKLHKVLLALSVSLFTSICMYGLPFLAKCKPCDPSLPGSCPGT 412

Query: 75  GRSGNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGL 134
           G +GNFKQFNCP+G+YNDLATLLLTTNDDAVRNIFS NTP EFQ  S++ +F+LYCILGL
Sbjct: 413 GGTGNFKQFNCPDGYYNDLATLLLTTNDDAVRNIFSINTPGEFQVMSLISYFVLYCILGL 472

Query: 135 ITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSL 194
           ITFGIAVPSGLFLPIILMGSAYGRLL +AMGSYT ID GLYAVLGAASLMAGSMRMTVSL
Sbjct: 473 ITFGIAVPSGLFLPIILMGSAYGRLLAIAMGSYTKIDPGLYAVLGAASLMAGSMRMTVSL 532

Query: 195 CVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILELKGLPFLDAHPEPWMRTLT 254
           CVIFLELTNNLLLLPITM+VLLIAK+VGD FN SIYEIILELKGLPFLDA+PEPWMR +T
Sbjct: 533 CVIFLELTNNLLLLPITMLVLLIAKSVGDCFNLSIYEIILELKGLPFLDANPEPWMRNIT 592

Query: 255 VGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLIL 314
            GEL D KPPV+TL G+EKV +IV+ L+NTT+NGFPV+DEGVVPP GL   ATELHGL+L
Sbjct: 593 AGELADVKPPVVTLCGVEKVGRIVEALKNTTYNGFPVVDEGVVPPVGLPVGATELHGLVL 652

Query: 315 RAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPL 374
           R HL+L LKKKWFL E+RRTEEWEVREKF+W++LAER GKIE+V VT +EMEMY+DLHPL
Sbjct: 653 RTHLLLVLKKKWFLHERRRTEEWEVREKFTWIDLAERGGKIEDVLVTKDEMEMYVDLHPL 712

Query: 375 TNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTA 434
           TNTTPYTV+ES+SVAKAMVLFRQVGLRH+L+VPKY+AAGVSPVVGILTRQDLRA NIL+ 
Sbjct: 713 TNTTPYTVVESLSVAKAMVLFRQVGLRHMLIVPKYQAAGVSPVVGILTRQDLRAHNILSV 772

Query: 435 FPHLERSKSGQK 446
           FPHLE+SKSG+K
Sbjct: 773 FPHLEKSKSGKK 784

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15232105|ref|NP_189353.1| chloride channel protein CLC-b [Arabidopsis thaliana] gi|41688457|sp|P92942.1|CLCB_ARATH RecName: Full=Chloride channel protein CLC-b; Short=AtCLC-b; AltName: Full=CBS domain-containing protein CBSCLC7 gi|1742955|emb|CAA96058.1| CLC-b chloride channel protein [Arabidopsis thaliana] gi|9294082|dbj|BAB01934.1| CLC-d chloride channel; anion channel protein [Arabidopsis thaliana] gi|17064884|gb|AAL32596.1| CLC-d chloride channel; anion channel protein [Arabidopsis thaliana] gi|332643754|gb|AEE77275.1| chloride channel protein CLC-b [Arabidopsis thaliana]

 Score =  686 bits (1769), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/418 (81%), Positives = 374/418 (89%)

Query: 30  RKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFKQFNCPNGH 89
            KGK+HK+LL+L+VS+FTSVC Y LPFLA CK CDPS  E CPTNGRSGNFKQF+CP G+
Sbjct: 363 EKGKIHKVLLSLTVSLFTSVCLYGLPFLAKCKPCDPSIDEICPTNGRSGNFKQFHCPKGY 422

Query: 90  YNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPI 149
           YNDLATLLLTTNDDAVRN+FSSNTP EF   S+ IFF+LYCILGL TFGIA PSGLFLPI
Sbjct: 423 YNDLATLLLTTNDDAVRNLFSSNTPNEFGMGSLWIFFVLYCILGLFTFGIATPSGLFLPI 482

Query: 150 ILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLP 209
           ILMG+AYGR+LG AMGSYT+IDQGLYAVLGAA+LMAGSMRMTVSLCVIFLELTNNLLLLP
Sbjct: 483 ILMGAAYGRMLGAAMGSYTSIDQGLYAVLGAAALMAGSMRMTVSLCVIFLELTNNLLLLP 542

Query: 210 ITMIVLLIAKTVGDSFNPSIYEIILELKGLPFLDAHPEPWMRTLTVGELIDAKPPVITLS 269
           ITMIVLLIAKTVGDSFNPSIY+IIL LKGLPFL+A+PEPWMR LTVGEL DAKPPV+TL 
Sbjct: 543 ITMIVLLIAKTVGDSFNPSIYDIILHLKGLPFLEANPEPWMRNLTVGELGDAKPPVVTLQ 602

Query: 270 GIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ 329
           G+EKVS IVDVL+NTTHN FPVLDE  VP  GLA  ATELHGLILRAHLV  LKK+WFL 
Sbjct: 603 GVEKVSNIVDVLKNTTHNAFPVLDEAEVPQVGLATGATELHGLILRAHLVKVLKKRWFLT 662

Query: 330 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVA 389
           EKRRTEEWEVREKF W ELAERE   ++VA+TS EMEMY+DLHPLTNTTPYTV+E+MSVA
Sbjct: 663 EKRRTEEWEVREKFPWDELAEREDNFDDVAITSAEMEMYVDLHPLTNTTPYTVMENMSVA 722

Query: 390 KAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTAFPHLERSKSGQKH 447
           KA+VLFRQVGLRHLL+VPK +A+G+ PVVGILTRQDLRA+NIL AFP LE+SK G+ H
Sbjct: 723 KALVLFRQVGLRHLLIVPKIQASGMCPVVGILTRQDLRAYNILQAFPLLEKSKGGKTH 780

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441686|ref|XP_004138613.1| PREDICTED: chloride channel protein CLC-b-like [Cucumis sativus] gi|449523299|ref|XP_004168661.1| PREDICTED: chloride channel protein CLC-b-like [Cucumis sativus] gi|386649465|gb|AFJ15538.1| chloride channel a [Cucumis sativus]

 Score =  684 bits (1764), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/432 (78%), Positives = 384/432 (88%), Gaps = 3/432 (0%)

Query: 18  HSSTCIFTLFHCRKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPET-CPTNGR 76
           H    ++ L + +KG+MHKLLLAL+VS+FTS+CQY LP+L  C  C+ S  ++ CPTNGR
Sbjct: 358 HKILRVYNLIN-QKGRMHKLLLALAVSLFTSICQYSLPYLVQCTPCNSSLSDSACPTNGR 416

Query: 77  SGNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLIT 136
           SGNFKQFNCP G+YNDLATLLLTTNDDAVRNIFS NTP E+QP S++IFF+LYCILGL T
Sbjct: 417 SGNFKQFNCPKGYYNDLATLLLTTNDDAVRNIFSINTPAEYQPLSLVIFFLLYCILGLFT 476

Query: 137 FGIAVPSGLFLPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCV 196
           FGIAVPSGLFLPIILMGS YGRL+G+ M  YTN+DQGL AVLGAASLMAGSMRMTVSLCV
Sbjct: 477 FGIAVPSGLFLPIILMGSGYGRLIGLLMRPYTNLDQGLLAVLGAASLMAGSMRMTVSLCV 536

Query: 197 IFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILELKGLPFLDAHPEPWMRTLTVG 256
           IFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIY+IIL LKGLPFLDA+PEPWMR +TVG
Sbjct: 537 IFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYDIILHLKGLPFLDANPEPWMRNITVG 596

Query: 257 ELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLD-EGVVPPSGLANVATELHGLILR 315
           EL DAKP V+TL G+EKVS+IV+VLRNTTHNGFPV+D + VVPP G+A  ATELHGL+LR
Sbjct: 597 ELADAKPAVVTLRGLEKVSRIVEVLRNTTHNGFPVVDADAVVPPVGMAVGATELHGLVLR 656

Query: 316 AHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLT 375
           AHL+  LKKKWFL+E+RRTE+WEVREKF+WVELAEREGKIEE+ VT EEMEMY+DLHPLT
Sbjct: 657 AHLLQVLKKKWFLRERRRTEDWEVREKFTWVELAEREGKIEELVVTKEEMEMYVDLHPLT 716

Query: 376 NTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTAF 435
           NTTPYTV+ESMSVAKA+VLFRQVGLRHLL+VPKYEAAGV PV+GILTRQDLR +NIL+AF
Sbjct: 717 NTTPYTVLESMSVAKALVLFRQVGLRHLLIVPKYEAAGVPPVIGILTRQDLRPYNILSAF 776

Query: 436 PHLERSKSGQKH 447
           P L R K  +K 
Sbjct: 777 PDLARIKGNEKR 788

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297814954|ref|XP_002875360.1| CLC-B [Arabidopsis lyrata subsp. lyrata] gi|297321198|gb|EFH51619.1| CLC-B [Arabidopsis lyrata subsp. lyrata]

 Score =  684 bits (1764), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/418 (80%), Positives = 373/418 (89%)

Query: 30  RKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFKQFNCPNGH 89
            KGK+HK+LL+L+VS+FTSVC Y LPFLA CK CDPS  E CPTNGRSGNFKQFNCP G+
Sbjct: 362 EKGKIHKVLLSLTVSLFTSVCLYGLPFLAKCKPCDPSIDEICPTNGRSGNFKQFNCPKGY 421

Query: 90  YNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPI 149
           YNDLATLLLTTNDDAVRN+FSSNTP EF   S+ IFF+LYCILGL TFGIA PSGLFLPI
Sbjct: 422 YNDLATLLLTTNDDAVRNLFSSNTPNEFGMGSLWIFFVLYCILGLFTFGIATPSGLFLPI 481

Query: 150 ILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLP 209
           ILMG+AYGR+LG AMGSYT+IDQGLYAVLGAA+LMAGSMRMTVSLCVIFLELTNNLLLLP
Sbjct: 482 ILMGAAYGRMLGAAMGSYTSIDQGLYAVLGAAALMAGSMRMTVSLCVIFLELTNNLLLLP 541

Query: 210 ITMIVLLIAKTVGDSFNPSIYEIILELKGLPFLDAHPEPWMRTLTVGELIDAKPPVITLS 269
           ITMIVLLIAKTVGDSFNPSIY+IIL LKGLPFL+A+PEPWMR L+VGEL DAKPPV+TL 
Sbjct: 542 ITMIVLLIAKTVGDSFNPSIYDIILHLKGLPFLEANPEPWMRNLSVGELGDAKPPVVTLQ 601

Query: 270 GIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ 329
           G+EKVS+IVDVL+NTTHN FPVLDE  VP  GL   ATELHGLILRAHLV  LKK+WFL 
Sbjct: 602 GVEKVSKIVDVLKNTTHNAFPVLDEAEVPQVGLPTSATELHGLILRAHLVKVLKKRWFLT 661

Query: 330 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVA 389
           EKRRTEEWEVREKF W ELAERE   ++VA+ S EMEMY+DLHPLTNTTPYTV+E+MSVA
Sbjct: 662 EKRRTEEWEVREKFPWDELAEREDNFDDVAIRSAEMEMYVDLHPLTNTTPYTVMENMSVA 721

Query: 390 KAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTAFPHLERSKSGQKH 447
           KA+VLFRQVGLRHLL+VPK +A+G+ PVVGILTRQDLRA+NIL AFP LE+SK G+ H
Sbjct: 722 KALVLFRQVGLRHLLIVPKIQASGMCPVVGILTRQDLRAYNILQAFPLLEKSKGGKAH 779

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	447
TAIR|locus:2095123	780	CLC-B "chloride channel B" [Ar	0.959	0.55	0.716	7.1e-164
TAIR|locus:2164466	775	CLC-A "chloride channel A" [Ar	0.941	0.543	0.714	9.6e-160
TAIR|locus:2158809	779	CLC-C "chloride channel C" [Ar	0.894	0.513	0.428	1.6e-86
TAIR|locus:2179724	792	CLC-D "chloride channel D" [Ar	0.859	0.484	0.382	6.7e-65
DICTYBASE|DDB_G0276865	815	clcB "CLC 6/7 family protein"	0.588	0.322	0.360	2.3e-51
ZFIN|ZDB-GENE-061103-196	795	clcn7 "chloride channel 7" [Da	0.836	0.470	0.313	7.2e-45
UNIPROTKB|F1RG09	809	LOC100626534 "Uncharacterized	0.762	0.421	0.330	5.7e-43
DICTYBASE|DDB_G0276229	757	clcC "CLC 6/7 family protein"	0.841	0.496	0.305	8.8e-43
RGD|61836	803	Clcn7 "chloride channel, volta	0.769	0.428	0.327	9.1e-43
UNIPROTKB|E2R0Q0	747	CLCN7 "Uncharacterized protein	0.765	0.457	0.326	1.4e-42

TAIR|locus:2095123 CLC-B "chloride channel B" [Arabidopsis thaliana (taxid:3702)]

 Score = 1595 (566.5 bits), Expect = 7.1e-164, P = 7.1e-164
 Identities = 308/430 (71%), Positives = 346/430 (80%)

Query:    18 HSSTCIFTLFHCRKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRS 77
             H    ++ L +  KGK+HK+LL+L+VS+FTSVC Y LPFLA CK CDPS  E CPTNGRS
Sbjct:   352 HKVLRLYNLIN-EKGKIHKVLLSLTVSLFTSVCLYGLPFLAKCKPCDPSIDEICPTNGRS 410

Query:    78 GNFKQFNCPNGHYXXXXXXXXXXXXXXVRNIFSSNTPTEFQPSSILIFFILYCILGLITF 137
             GNFKQF+CP G+Y              VRN+FSSNTP EF   S+ IFF+LYCILGL TF
Sbjct:   411 GNFKQFHCPKGYYNDLATLLLTTNDDAVRNLFSSNTPNEFGMGSLWIFFVLYCILGLFTF 470

Query:   138 GIAVPSGLFLPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVI 197
             GIA PSGLFLPIILMG+AYGR+LG AMGSYT+IDQGLYAVLGAA+LMAGSMRMTVSLCVI
Sbjct:   471 GIATPSGLFLPIILMGAAYGRMLGAAMGSYTSIDQGLYAVLGAAALMAGSMRMTVSLCVI 530

Query:   198 FXXXXXXXXXXXXXXXXXXXAKTVGDSFNPSIYEIILELKGLPFLDAHPEPWMRTLTVGE 257
             F                   AKTVGDSFNPSIY+IIL LKGLPFL+A+PEPWMR LTVGE
Sbjct:   531 FLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYDIILHLKGLPFLEANPEPWMRNLTVGE 590

Query:   258 LIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAH 317
             L DAKPPV+TL G+EKVS IVDVL+NTTHN FPVLDE  VP  GLA  ATELHGLILRAH
Sbjct:   591 LGDAKPPVVTLQGVEKVSNIVDVLKNTTHNAFPVLDEAEVPQVGLATGATELHGLILRAH 650

Query:   318 LVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNT 377
             LV  LKK+WFL EKRRTEEWEVREKF W ELAERE   ++VA+TS EMEMY+DLHPLTNT
Sbjct:   651 LVKVLKKRWFLTEKRRTEEWEVREKFPWDELAEREDNFDDVAITSAEMEMYVDLHPLTNT 710

Query:   378 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTAFPH 437
             TPYTV+E+MSVAKA+VLFRQVGLRHLL+VPK +A+G+ PVVGILTRQDLRA+NIL AFP 
Sbjct:   711 TPYTVMENMSVAKALVLFRQVGLRHLLIVPKIQASGMCPVVGILTRQDLRAYNILQAFPL 770

Query:   438 LERSKSGQKH 447
             LE+SK G+ H
Sbjct:   771 LEKSKGGKTH 780

GO:0005216 "ion channel activity" evidence=IEA

GO:0005247 "voltage-gated chloride channel activity" evidence=IEA;ISS

GO:0005253 "anion channel activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006821 "chloride transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009671 "nitrate:hydrogen symporter activity" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0005622 "intracellular" evidence=TAS

TAIR|locus:2164466 CLC-A "chloride channel A" [Arabidopsis thaliana (taxid:3702)]

 Score = 1556 (552.8 bits), Expect = 9.6e-160, P = 9.6e-160
 Identities = 306/428 (71%), Positives = 344/428 (80%)

Query:    18 HSSTCIFTLFHCRKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRS 77
             H    ++ L + +KGK+HK+LL+L VS+FTSVC + LPFLA+CK CDPS  E CPTNGRS
Sbjct:   353 HKVLRLYNLIN-QKGKIHKVLLSLGVSLFTSVCLFGLPFLAECKPCDPSIDEICPTNGRS 411

Query:    78 GNFKQFNCPNGHYXXXXXXXXXXXXXXVRNIFSSNTPTEFQPSSILIFFILYCILGLITF 137
             GNFKQFNCPNG+Y              VRNIFSSNTP EF   S+ IFF LYCILGLITF
Sbjct:   412 GNFKQFNCPNGYYNDLSTLLLTTNDDAVRNIFSSNTPNEFGMVSLWIFFGLYCILGLITF 471

Query:   138 GIAVPSGLFLPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVI 197
             GIA PSGLFLPIILMGSAYGR+LG AMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVI
Sbjct:   472 GIATPSGLFLPIILMGSAYGRMLGTAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVI 531

Query:   198 FXXXXXXXXXXXXXXXXXXXAKTVGDSFNPSIYEIILELKGLPFLDAHPEPWMRTLTVGE 257
             F                   AKTVGDSFN SIYEIIL LKGLPFL+A+PEPWMR LTVGE
Sbjct:   532 FLELTNNLLLLPITMFVLLIAKTVGDSFNLSIYEIILHLKGLPFLEANPEPWMRNLTVGE 591

Query:   258 LIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAH 317
             L DAKPPV+TL+G+EKV+ IVDVLRNTTHN FPVLD G        N  TELHGLILRAH
Sbjct:   592 LNDAKPPVVTLNGVEKVANIVDVLRNTTHNAFPVLD-GADQ-----NTGTELHGLILRAH 645

Query:   318 LVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNT 377
             LV  LKK+WFL EKRRTEEWEVREKF+ VELAERE   ++VA+TS EM++Y+DLHPLTNT
Sbjct:   646 LVKVLKKRWFLNEKRRTEEWEVREKFTPVELAEREDNFDDVAITSSEMQLYVDLHPLTNT 705

Query:   378 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTAFPH 437
             TPYTV++SMSVAKA+VLFR VGLRHLLVVPK +A+G+SPV+GILTRQDLRA+NIL AFPH
Sbjct:   706 TPYTVVQSMSVAKALVLFRSVGLRHLLVVPKIQASGMSPVIGILTRQDLRAYNILQAFPH 765

Query:   438 LERSKSGQ 445
             L++ KSG+
Sbjct:   766 LDKHKSGK 773

GO:0005216 "ion channel activity" evidence=IEA

GO:0005247 "voltage-gated chloride channel activity" evidence=IEA;ISS

GO:0005253 "anion channel activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006821 "chloride transport" evidence=IEA;ISS;IDA

GO:0016020 "membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0010167 "response to nitrate" evidence=RCA;IMP

GO:0015112 "nitrate transmembrane transporter activity" evidence=IDA

GO:0015706 "nitrate transport" evidence=RCA;IDA

GO:0006826 "iron ion transport" evidence=RCA

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0030243 "cellulose metabolic process" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

GO:0005622 "intracellular" evidence=TAS

TAIR|locus:2158809 CLC-C "chloride channel C" [Arabidopsis thaliana (taxid:3702)]

 Score = 865 (309.6 bits), Expect = 1.6e-86, P = 1.6e-86
 Identities = 179/418 (42%), Positives = 263/418 (62%)

Query:    31 KGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPE-TCPTNGRSGNFKQFNCPNGH 89
             KG   K++L ++VS+ +S C + LP+L+ C  C     E  CP+ GRS  +K F CP  H
Sbjct:   374 KGPRFKIMLVMAVSILSSCCAFGLPWLSQCTPCPIGIEEGKCPSVGRSSIYKSFQCPPNH 433

Query:    90 YXXXXXXXXXXXXXXVRNIFSSNTPTEFQPSSILIFFI-LYCILGLITFGIAVPSGLFLP 148
             Y              +RN+F+S +  EF  S++ IFF+ +YC LG+IT+GIA+PSGLF+P
Sbjct:   434 YNDLSSLLLNTNDDAIRNLFTSRSENEFHISTLAIFFVAVYC-LGIITYGIAIPSGLFIP 492

Query:   149 IILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFXXXXXXXXXX 208
             +IL G++YGRL+G  +G  + +D GL+++LGAAS + G+MRMTVSLCVI           
Sbjct:   493 VILAGASYGRLVGRLLGPVSQLDVGLFSLLGAASFLGGTMRMTVSLCVILLELTNNLLML 552

Query:   209 XXXXXXXXXAKTVGDSFNPSIYEIILELKGLPFLDAHPEPWMRTLTVGELIDAKPPVITL 268
                      +KTV D FN  +Y+ I+ +KGLP+++ H EP+MR L   +++     +I+ 
Sbjct:   553 PLVMLVLLISKTVADCFNRGVYDQIVTMKGLPYMEDHAEPYMRNLVAKDVVSGA--LISF 610

Query:   269 SGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFL 328
             S +EKV  I   L+ T HNGFPV+DE   PP      A+EL G+ LR+HL++ L+ K F 
Sbjct:   611 SRVEKVGVIWQALKMTRHNGFPVIDE---PPF---TEASELCGIALRSHLLVLLQGKKF- 663

Query:   329 QEKRRTEEWEVREKFSWVELAER---EG-KIEEVAVTSEEMEMYIDLHPLTNTTPYTVIE 384
              ++R T   ++       +  +    +G KIE++ ++ EEMEMY+DLHP+TNT+PYTV+E
Sbjct:   664 SKQRTTFGSQILRSCKARDFGKAGLGKGLKIEDLDLSEEEMEMYVDLHPITNTSPYTVLE 723

Query:   385 SMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTAFPHLERSK 442
             ++S+AKA +LFRQ+GLRHL VVPK    G  P+VGILTR D    ++L  +PH++  K
Sbjct:   724 TLSLAKAAILFRQLGLRHLCVVPK--TPGRPPIVGILTRHDFMPEHVLGLYPHIDPLK 779

GO:0005216 "ion channel activity" evidence=IEA

GO:0005247 "voltage-gated chloride channel activity" evidence=IEA;ISS

GO:0005253 "anion channel activity" evidence=ISS

GO:0006821 "chloride transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0005622 "intracellular" evidence=TAS

TAIR|locus:2179724 CLC-D "chloride channel D" [Arabidopsis thaliana (taxid:3702)]

 Score = 661 (237.7 bits), Expect = 6.7e-65, P = 6.7e-65
 Identities = 157/410 (38%), Positives = 229/410 (55%)

Query:    30 RKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPET---CPTN-GRSGNFKQFNC 85
             +KG   K++ A  +S  TS   + LP L  C  C  S P++   CP   G  GN+  F C
Sbjct:   354 KKGNRVKIIEACIISCITSAISFGLPLLRKCSPCPESVPDSGIECPRPPGMYGNYVNFFC 413

Query:    86 P-NGHYXXXXXXXXXXXXXXVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSG 144
               +  Y              +RN+FS+ T  EF   S+L F  ++  L ++TFG AVP+G
Sbjct:   414 KTDNEYNDLATIFFNTQDDAIRNLFSAKTMREFSAQSLLTFLAMFYTLAVVTFGTAVPAG 473

Query:   145 LFLPIILMGSAYGRLLGMAMGSY---TNIDQGLYAVLGAASLMAGSMRMTVSLCVIFXXX 201
              F+P I++GS YGRL+GM +  +    NI++G YA+LGAAS + GSMRMTVSLCVI    
Sbjct:   474 QFVPGIMIGSTYGRLVGMFVVRFYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEI 533

Query:   202 XXXXXXXXXXXXXXXXAKTVGDSFNPSIYEIILELKGLPFLDAHPEPWMRTLTVGELIDA 261
                             +K VGD+FN  +YE+   LKG+P L++ P+  MR +   E   +
Sbjct:   534 TNNLKLLPLIMLVLLISKAVGDAFNEGLYEVQARLKGIPLLESRPKYHMRQMIAKEACQS 593

Query:   262 KPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLA 321
             +  VI+L  + +V+ +  +L +  HNGFPV+D      SG     T + GL+LR+HL++ 
Sbjct:   594 QK-VISLPRVIRVADVASILGSNKHNGFPVIDH---TRSG----ETLVIGLVLRSHLLVL 645

Query:   322 LKKKWFLQEKRRTEEWEVRE-KFSWVELAE---REGK-IEEVAVTSEEMEMYIDLHPLTN 376
             L+ K   Q      +   R  + S+ E A+    +G  IE++ +TS+++EMYIDL P  N
Sbjct:   646 LQSKVDFQHSPLPCDPSARNIRHSFSEFAKPVSSKGLCIEDIHLTSDDLEMYIDLAPFLN 705

Query:   377 TTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDL 426
              +PY V E MS+ K   LFRQ+GLRHL VVP+      S V+G++TR+DL
Sbjct:   706 PSPYVVPEDMSLTKVYNLFRQLGLRHLFVVPR-----PSRVIGLITRKDL 750

GO:0005216 "ion channel activity" evidence=IEA

GO:0005247 "voltage-gated chloride channel activity" evidence=IEA;IGI

GO:0005253 "anion channel activity" evidence=ISS

GO:0006821 "chloride transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005802 "trans-Golgi network" evidence=IDA

GO:0009826 "unidimensional cell growth" evidence=IMP

GO:0030002 "cellular anion homeostasis" evidence=IMP

GO:0007155 "cell adhesion" evidence=RCA

GO:0010090 "trichome morphogenesis" evidence=RCA

GO:0045010 "actin nucleation" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

GO:0005622 "intracellular" evidence=IC

GO:0010038 "response to metal ion" evidence=IGI

DICTYBASE|DDB_G0276865 clcB "CLC 6/7 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 418 (152.2 bits), Expect = 2.3e-51, Sum P(2) = 2.3e-51
 Identities = 98/272 (36%), Positives = 147/272 (54%)

Query:    26 LFHCRKGKMHKLLLALSVSVFTSVCQYCLPFLADCK---ACDPSFPETC-PTNGRSGNFK 81
             LF   K K++K++    + + +SV  +    LADC+         P TC P +  +    
Sbjct:   371 LF-ANKSKLYKMIEVCVIVILSSVVCFFPALLADCRPISGISGLTPGTCDPGDDSTLILN 429

Query:    82 QFNCPNGHYXXXXXXXXXXXXXXVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAV 141
             QFNC  G+Y              ++ +FS +T   F   ++L F I Y +L +IT G+ V
Sbjct:   430 QFNCAEGYYNPMATLTLTTLENSLQIVFSRSTNI-FTAQTLLTFSIFYYVLTIITSGLYV 488

Query:   142 PSGLFLPIILMGSAYGRLLGMAMGSY-TNIDQGLYAVLGAASLMAGSMRMTVSLCVIFXX 200
              SG+F+P++L+GS++GRL+G+ +  Y T+ID  +YA++GAAS+MAGS+RMT+SL VI   
Sbjct:   489 ASGIFIPMMLIGSSWGRLIGIFLSKYFTSIDPSIYALIGAASMMAGSLRMTISLVVIIVE 548

Query:   201 XXXXXXXXXXXXXXXXXAKTVGDSFNPSIYEIILELKGLPFLDAHPEPWMRTLTVGELID 260
                               K  GD FN SIYE ++ELK +P+L++ P   +R  TV E + 
Sbjct:   549 LTETTQYLLPVILSVMVGKWCGDIFNESIYEHLIELKHIPYLNSQPPNHLRKKTVAEAMS 608

Query:   261 AKPPVITLSGIEKVSQIVDVLRNTTHNGFPVL 292
                 V TL  I KV   + +L    HNGFPV+
Sbjct:   609 TD--VKTLPEIVKVKTALTILETCPHNGFPVV 638

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006821 "chloride transport" evidence=IEA

GO:0005247 "voltage-gated chloride channel activity" evidence=IEA

GO:0005216 "ion channel activity" evidence=IEA

GO:0034765 "regulation of ion transmembrane transport" evidence=IEA

GO:0034707 "chloride channel complex" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005254 "chloride channel activity" evidence=IEA

GO:0005244 "voltage-gated ion channel activity" evidence=IEA

ZFIN|ZDB-GENE-061103-196 clcn7 "chloride channel 7" [Danio rerio (taxid:7955)]

 Score = 478 (173.3 bits), Expect = 7.2e-45, P = 7.2e-45
 Identities = 127/405 (31%), Positives = 210/405 (51%)

Query:    36 KLLLALSVSVFTSVCQYCLPFLA-DCKACDPSFPETCPTNGRSGNFKQFNCPNGHYXXXX 94
             +++ A+ V+  T+   + + + + +C+   P   E  P         Q  C +G Y    
Sbjct:   400 QVMEAMLVAAVTATVSFAMIYFSTECQPLGPDHTEEYPL--------QLFCADGEYNAMA 451

Query:    95 XXXXXXXXXXVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGS 154
                       VR++F  N P  + P ++ +F + Y +L + T+G+ V +G+F+P +L+G+
Sbjct:   452 TAFFNTPERSVRSLFH-NPPGTYNPMTLGVFTLAYFLLAVWTYGLTVSAGVFIPSLLIGA 510

Query:   155 AYGRLLGMAMGSYTN-----IDQGLYAVLGAASLMAGSMRMTVSLCVIFXXXXXXXXXXX 209
             A+GRL G+ +   T       D G YA++GAA+ + G +RMT+SL VI            
Sbjct:   511 AWGRLFGILLSFITTSKSIWADPGKYALIGAAAQLGGIVRMTLSLTVILVEATGNVTYGF 570

Query:   210 XXXXXXXXAKTVGDSFNPSIYEIILELKGLPFLDAHPEPWMRTLTVGELIDAKPPVITLS 269
                     AK VGD F   +Y+I ++L+ +PFL     P    LT  E++ ++  V   +
Sbjct:   571 PIMLVLMTAKIVGDYFVEGLYDIHIKLQSVPFLHWEAPPTSHWLTAREVMSSQ--VTCFN 628

Query:   270 GIEKVSQIVDVLRNTT--HNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWF 327
              IEKV  IVDVL NT+  HNGFPV+   V       +  ++L GL+LR+ L++ LK K F
Sbjct:   629 RIEKVGTIVDVLSNTSTNHNGFPVVTH-VTE----IDEPSKLCGLVLRSQLIVLLKHKVF 683

Query:   328 LQE-KRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESM 386
             ++    R  + +++ K  + +   R   I+ + V+ +E E  +DL    N TPYTV +  
Sbjct:   684 VERASSRFSQRKLQLK-DFRDAYPRFPPIQSIHVSQDERECMMDLTEFMNPTPYTVPQET 742

Query:   387 SVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 431
             S+ +   LFR +GLRHL+VV          VVG++TR+DL  +++
Sbjct:   743 SLPRVFKLFRALGLRHLVVVDNENR-----VVGLVTRKDLARYHL 782

GO:0005216 "ion channel activity" evidence=IEA

GO:0006821 "chloride transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005247 "voltage-gated chloride channel activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1RG09 LOC100626534 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 461 (167.3 bits), Expect = 5.7e-43, P = 5.7e-43
 Identities = 123/372 (33%), Positives = 192/372 (51%)

Query:    72 PTNGRSGNFK-QFNCPNGHYXXXXXXXXXXXXXXVRNIFSSNTPTEFQPSSILIFFILYC 130
             P  G S ++  Q  C +G Y              V ++F  + P  + P ++ +F ++Y 
Sbjct:   444 PLQGSSVSYPLQLFCADGEYNSMAAAFFNTPEKSVVSLFH-DPPGSYNPMTLGLFTLVYF 502

Query:   131 ILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYTNI----DQGLYAVLGAASLMAG 186
              L   T+G+ V +G+F+P +L+G+A+GRL G+++   T      D G YA++GAA+ + G
Sbjct:   503 FLACWTYGLTVSAGVFIPSLLIGAAWGRLFGISLSYITGAAIWADPGKYALMGAAAQLGG 562

Query:   187 SMRMTVSLCVIFXXXXXXXXXXXXXXXXXXXAKTVGDSFNPSIYEIILELKGLPFLDAHP 246
              +RMT+SL VI                    AK VGD F   +Y++ ++L+ +PFL    
Sbjct:   563 IVRMTLSLTVIMMEATSNVTYGFPIMLVLMTAKIVGDVFIEGLYDMHIQLQSVPFLHWEA 622

Query:   247 EPWMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTT--HNGFPVLD--EGVVPPSGL 302
                  +LT  E++ A  PV  L   EKV  IVDVL N+   HNGFPV+D  +   PP   
Sbjct:   623 PVTSHSLTAREVMSA--PVTCLRRREKVGVIVDVLSNSASNHNGFPVVDGADAAQPP--- 677

Query:   303 ANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAE---REGKIEEVA 359
                   L GLILR+ L++ LK K F++   R+    VR +    +  +   R   I+ + 
Sbjct:   678 -----RLQGLILRSQLIVLLKHKVFVE---RSSMGLVRRRLRLKDFRDAYPRFPPIQSIH 729

Query:   360 VTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVG 419
             V+ +E E  +DL    N +PYTV +  S+ +   LFR +GLRHL+VV        + VVG
Sbjct:   730 VSQDERECTMDLSEFMNPSPYTVPQEASLPRVFKLFRALGLRHLVVVDNR-----NQVVG 784

Query:   420 ILTRQDLRAFNI 431
             ++TR+DL  + +
Sbjct:   785 LVTRKDLARYRL 796

GO:0016021 "integral to membrane" evidence=IEA

GO:0005247 "voltage-gated chloride channel activity" evidence=IEA

DICTYBASE|DDB_G0276229 clcC "CLC 6/7 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 458 (166.3 bits), Expect = 8.8e-43, P = 8.8e-43
 Identities = 121/396 (30%), Positives = 199/396 (50%)

Query:    36 KLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGN-FKQFNCPNGHYXXXX 94
             +L  AL VSV TSV  Y   F+ DC+       ET     +S     QF CP+G Y    
Sbjct:   376 RLFEALFVSVVTSVVCYYASFIFDCRYQSNIVIETSVCEDQSNTEMVQFFCPDGMYSELG 435

Query:    95 XXXXXXXXXXVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGS 154
                       +R ++S  T   F    +L+F ++     + + G+ V  GLF+P++++G+
Sbjct:   436 SLLFGNPDQALRRLYS-RTNNMFTLPPLLVFTLISLFFSIWSSGLWVAGGLFVPMMMVGA 494

Query:   155 AYGRLLGMAMGS-YTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFXXXXXXXXXXXXXXX 213
              +GRL G  +   +TNID  +YA++G+A++MAG  RMTV + VI                
Sbjct:   495 GFGRLFGQTISMWFTNIDSSIYALVGSAAMMAGYCRMTVCIVVIMVELTEGTQYLVPIIL 554

Query:   214 XXXXAKTVGDSFNPSIYEIILELKGLPFLDAHPEPWMRTLTVGELIDAKPPVITLSGIEK 273
                 +K VGD FN S+YE ++E K +PFL + P      + + +++     V+ L  + +
Sbjct:   555 AVMISKWVGDFFNESVYEHLMEQKSIPFLQSKPPHSTNNIRISDVMSKN--VVVLPEVCQ 612

Query:   274 VSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ---E 330
             V  +V++L +  HN FPV++ G      L        G+ILR H+++ L  + F +   E
Sbjct:   613 VRLLVNILNSNNHNAFPVINSGPYDNQRL------YRGIILRDHILVLLFYRVFYRGTGE 666

Query:   331 KRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAK 390
             +   +E    +KF+  E ++    + E+     E++ +IDL P  N++  T+  + S  +
Sbjct:   667 EIYLDENFDFDKFT-TETSKSPPPLSEMNFDQFELDSFIDLRPYMNSSGVTIHNTFSFVE 725

Query:   391 AMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDL 426
             A  LFR +GLRHL V+        + VVG++TR DL
Sbjct:   726 AYKLFRNMGLRHLPVIDIN-----NEVVGMVTRNDL 756

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006821 "chloride transport" evidence=IEA

GO:0005247 "voltage-gated chloride channel activity" evidence=IEA

GO:0005216 "ion channel activity" evidence=IEA

GO:0034765 "regulation of ion transmembrane transport" evidence=IEA

GO:0034707 "chloride channel complex" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005254 "chloride channel activity" evidence=IEA

GO:0005244 "voltage-gated ion channel activity" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

RGD|61836 Clcn7 "chloride channel, voltage-sensitive 7" [Rattus norvegicus (taxid:10116)]

 Score = 459 (166.6 bits), Expect = 9.1e-43, P = 9.1e-43
 Identities = 121/369 (32%), Positives = 192/369 (52%)

Query:    72 PTNGRSGNFK-QFNCPNGHYXXXXXXXXXXXXXXVRNIFSSNTPTEFQPSSILIFFILYC 130
             P  G S ++  Q  C +G Y              V ++F  + P  + P ++ +F ++Y 
Sbjct:   438 PLQGSSMSYPLQLFCADGEYNSMAAAFFNTPEKSVVSLFH-DPPGSYNPMTLGLFTLVYF 496

Query:   131 ILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYTNI----DQGLYAVLGAASLMAG 186
              L   T+G+ V +G+F+P +L+G+A+GRL G++M   T      D G YA++GAA+ + G
Sbjct:   497 FLACWTYGLTVSAGVFIPSLLIGAAWGRLFGISMSYLTGAAIWADPGKYALMGAAAQLGG 556

Query:   187 SMRMTVSLCVIFXXXXXXXXXXXXXXXXXXXAKTVGDSFNPSIYEIILELKGLPFLDAHP 246
              +RMT+SL VI                    AK VGD F   +Y++ ++L+ +PFL    
Sbjct:   557 IVRMTLSLTVIMMEATSNVTYGFPIMLVLMTAKIVGDVFIEGLYDMHIQLQSVPFLHWEA 616

Query:   247 EPWMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTT--HNGFPVLDE-GVVPPSGLA 303
                  +LT  E++    PV  L   EKV  IVDVL +T   HNGFPV+++ G   P+   
Sbjct:   617 PVTSHSLTAREVMST--PVTCLRRREKVGIIVDVLSDTASNHNGFPVVEDVGDTQPA--- 671

Query:   304 NVATELHGLILRAHLVLALKKKWFLQEKRR-TEEWEVREKFSWVELAEREGKIEEVAVTS 362
                  L GLILR+ L++ LK K F++       +  +R K  + +   R   I+ + V+ 
Sbjct:   672 ----RLQGLILRSQLIVLLKHKVFVERSNMGLVQRRLRLK-DFRDAYPRFPPIQSIHVSQ 726

Query:   363 EEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILT 422
             +E E  +DL    N +PYTV +  S+ +   LFR +GLRHL+VV  +     + VVG++T
Sbjct:   727 DERECTMDLSEFMNPSPYTVPQEASLPRVFKLFRALGLRHLVVVDNH-----NQVVGLVT 781

Query:   423 RQDLRAFNI 431
             R+DL  + +
Sbjct:   782 RKDLARYRL 790

GO:0003674 "molecular_function" evidence=ND

GO:0005247 "voltage-gated chloride channel activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0009268 "response to pH" evidence=IDA

GO:0015297 "antiporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IDA

UNIPROTKB|E2R0Q0 CLCN7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 456 (165.6 bits), Expect = 1.4e-42, P = 1.4e-42
 Identities = 121/371 (32%), Positives = 192/371 (51%)

Query:    72 PTNGRSGNFK-QFNCPNGHYXXXXXXXXXXXXXXVRNIFSSNTPTEFQPSSILIFFILYC 130
             P  G S ++  Q  C +G Y              V ++F  + P  + P ++ +F ++Y 
Sbjct:   382 PLQGSSVSYPLQLFCADGEYNSMAAAFFNTPEKSVVSLFH-DPPGSYNPMTLGLFTLVYF 440

Query:   131 ILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYTNI----DQGLYAVLGAASLMAG 186
              L   T+G+ V +G+F+P +L+G+A+GRL G+++   T      D G YA++GAA+ + G
Sbjct:   441 FLACWTYGLTVSAGVFIPSLLIGAAWGRLFGISLSYLTGAAIWADPGKYALMGAAAQLGG 500

Query:   187 SMRMTVSLCVIFXXXXXXXXXXXXXXXXXXXAKTVGDSFNPSIYEIILELKGLPFLDAHP 246
              +RMT+SL VI                    AK VGD F   +Y++ ++L+ +PFL    
Sbjct:   501 IVRMTLSLTVIMMEATSNVTYGFPIMLVLMTAKIVGDIFIEGLYDMHIQLQSVPFLHWEA 560

Query:   247 EPWMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTT--HNGFPVLD-EGVVPPSGLA 303
                  +LT  E++    PV  L   EKV  IVD+L +TT  HNGFPV++  G   P+   
Sbjct:   561 PVTSHSLTAREVMST--PVTCLRRREKVGVIVDILSDTTSNHNGFPVVELAGDTQPA--- 615

Query:   304 NVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAE---REGKIEEVAV 360
                  L GLILR+ L++ LK K F++   R+    VR +    +  +   R   I+ + V
Sbjct:   616 ----RLQGLILRSQLIVLLKHKVFVE---RSSMGLVRRRLRLKDFRDAYPRFPPIQSIHV 668

Query:   361 TSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGI 420
             + +E E  +DL    N +PYTV +  S+ +   LFR +GLRHL+VV        + VVG+
Sbjct:   669 SQDERECTMDLSEFMNPSPYTVPQDASLPRVFKLFRALGLRHLVVVDN-----CNQVVGL 723

Query:   421 LTRQDLRAFNI 431
             +TR+DL  + +
Sbjct:   724 VTRKDLARYRL 734

GO:0016021 "integral to membrane" evidence=IEA

GO:0005247 "voltage-gated chloride channel activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P92942	CLCB_ARATH	No assigned EC number	0.8110	0.9351	0.5358	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_LG_I0924 Cl-channel clc-7 (785 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	447
cd03685	466	cd03685, ClC_6_like, ClC-6-like chloride channel p	5e-67
cd01036	416	cd01036, ClC_euk, Chloride channel, ClC	1e-32
cd03684	445	cd03684, ClC_3_like, ClC-3-like chloride channel p	4e-28
cd03683	426	cd03683, ClC_1_like, ClC-1-like chloride channel p	2e-23
pfam00654	345	pfam00654, Voltage_CLC, Voltage gated chloride cha	2e-21
cd04591	105	cd04591, CBS_pair_EriC_assoc_euk_bac, This cd cont	4e-19
COG0038	443	COG0038, EriC, Chloride channel protein EriC [Inor	2e-15
cd00400	383	cd00400, Voltage_gated_ClC, CLC voltage-gated chlo	6e-14
cd01031	402	cd01031, EriC, ClC chloride channel EriC	8e-13
PRK05277	438	PRK05277, PRK05277, chloride channel protein; Prov	7e-10
PRK01862	574	PRK01862, PRK01862, putative voltage-gated ClC-typ	1e-06
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	3e-05
cd01034	390	cd01034, EriC_like, ClC chloride channel family	7e-04
cd04610	107	cd04610, CBS_pair_ParBc_assoc, This cd contains tw	0.001
pfam00571	57	pfam00571, CBS, CBS domain	0.002
cd01033	388	cd01033, ClC_like, Putative ClC chloride channel	0.003

>gnl|CDD|239657 cd03685, ClC_6_like, ClC-6-like chloride channel proteins

 Score =  220 bits (564), Expect = 5e-67
 Identities = 83/127 (65%), Positives = 103/127 (81%), Gaps = 3/127 (2%)

Query: 119 PSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSY---TNIDQGLY 175
           P ++LIFF+LY  L   TFGIAVPSGLF+P+IL+G+AYGRL+G+ +GSY   T+ID GLY
Sbjct: 333 PQTLLIFFVLYYFLACWTFGIAVPSGLFIPMILIGAAYGRLVGILLGSYFGFTSIDPGLY 392

Query: 176 AVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILE 235
           A+LGAA+ + G MRMTVSL VI LELTNNL  LP  M+VL+IAK VGD FN  IY+II++
Sbjct: 393 ALLGAAAFLGGVMRMTVSLTVILLELTNNLTYLPPIMLVLMIAKWVGDYFNEGIYDIIIQ 452

Query: 236 LKGLPFL 242
           LKG+PFL
Sbjct: 453 LKGVPFL 459

This CD includes ClC-6, ClC-7 and ClC-B, C, D in plants. Proteins in this family are ubiquitous in eukarotes and their functions are unclear. They are expressed in intracellular organelles membranes. This family belongs to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. ClC chloride ion channel superfamily perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, and transepithelial transport in animals. Length = 466

>gnl|CDD|238507 cd01036, ClC_euk, Chloride channel, ClC

 Score =  127 bits (321), Expect = 1e-32
 Identities = 47/122 (38%), Positives = 77/122 (63%), Gaps = 11/122 (9%)

Query: 121 SILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAM-----------GSYTN 169
           ++L+F ++Y  +  + FGIAVP G F+P +++G+A GRL+G+ +            +   
Sbjct: 295 TLLLFLLIYFWMSALAFGIAVPGGTFIPSLVIGAAIGRLVGLLVHRIAVAGIGAESATLW 354

Query: 170 IDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSI 229
            D G+YA++GAA+ + G+ R+T S+CVI +ELT +L  L   M+ +LIAK V D+F  S+
Sbjct: 355 ADPGVYALIGAAAFLGGTTRLTFSICVIMMELTGDLHHLLPLMVAILIAKAVADAFCESL 414

Query: 230 YE 231
           Y 
Sbjct: 415 YH 416

These domains are found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins that perform a variety of functions including cell volume regulation, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles, signal transduction and transepithelial transport. They are also involved in many pathophysiological processes and are responsible for a number of human diseases. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. Some proteins possess long C-terminal cytoplasmic regions containing two CBS (cystathionine beta synthase) domains of putative regulatory function. Length = 416

>gnl|CDD|239656 cd03684, ClC_3_like, ClC-3-like chloride channel proteins

 Score =  115 bits (290), Expect = 4e-28
 Identities = 50/140 (35%), Positives = 78/140 (55%), Gaps = 18/140 (12%)

Query: 121 SILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYTN----------- 169
           S+L+  I+  +L + TFGI VP+G+F+P + +G+ +GR++G+ +                
Sbjct: 306 SLLLALIIKLLLTIFTFGIKVPAGIFVPSMAVGALFGRIVGILVEQLAYSYPDSIFFACC 365

Query: 170 ------IDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGD 223
                 I  GLYA++GAA+ + G  RMTVSL VI  ELT  L  +   MI ++++K V D
Sbjct: 366 TAGPSCITPGLYAMVGAAAFLGGVTRMTVSLVVIMFELTGALNYILPLMIAVMVSKWVAD 425

Query: 224 SFNP-SIYEIILELKGLPFL 242
           +     IY+  + L G PFL
Sbjct: 426 AIGKEGIYDAHIHLNGYPFL 445

This CD includes ClC-3, ClC-4, ClC-5 and ClC-Y1. ClC-3 was initially cloned from rat kidney. Expression of ClC-3 produces outwardly-rectifying Cl currents that are inhibited by protein kinase C activation. It has been suggested that ClC-3 may be a ubiquitous swelling-activated Cl channel that has very similar characteristics to those of native volume-regulated Cl currents. The function of ClC-4 is unclear. Studies of human ClC-4 have revealed that it gives rise to Cl currents that rapidly activate at positive voltages, and are sensitive to extracellular pH, with currents decreasing when pH falls below 6.5. ClC-4 is broadly distributed, especially in brain and heart. ClC-5 is predominantly expressed in the kidney, but can be found in the brain and liver. Mutations in the ClC-5 gene cause certain hereditary diseases, including Dent's disease, an X-chromosome linked syndrome characterised by proteinuria, hypercalciuria, and kidney stones (nephrolithiasis), leading to progressive renal failure. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. This domain is found in the eukaryotic halogen ion (Cl- and I-) channel proteins, that perform a variety of functions including cell volume regulation, the membrane potential stabilization, transepithelial chloride transport and charge compensation necessary for the acidification of intracellular organelles. Length = 445

>gnl|CDD|239655 cd03683, ClC_1_like, ClC-1-like chloride channel proteins

 Score =  101 bits (254), Expect = 2e-23
 Identities = 47/133 (35%), Positives = 80/133 (60%), Gaps = 13/133 (9%)

Query: 121 SILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLG----------MAMGSYTNI 170
           ++ +F ++  +L  +   + VP+G+F+P+ ++G+A GRL+G          +  G    I
Sbjct: 294 TLFLFIVVKFVLTALAITLPVPAGIFMPVFVIGAALGRLVGEIMAVLFPEGIRGGISNPI 353

Query: 171 DQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNL-LLLPITMIVLLIAKTVGDSFNPSI 229
             G YAV+GAA+  +G++  TVS+ VI  ELT  +  LLP+ +I +LI+  V     PSI
Sbjct: 354 GPGGYAVVGAAAF-SGAVTHTVSVAVIIFELTGQISHLLPV-LIAVLISNAVAQFLQPSI 411

Query: 230 YEIILELKGLPFL 242
           Y+ I+++K LP+L
Sbjct: 412 YDSIIKIKKLPYL 424

This CD includes isoforms ClC-0, ClC-1, ClC-2 and ClC_K. ClC-1 is expressed in skeletal muscle and its mutation leads to both recessively and dominantly-inherited forms of muscle stiffness or myotonia. ClC-K is exclusively expressed in kidney. Similarly, mutation of ClC-K leads to nephrogenic diabetes insipidus in mice and Bartter's syndrome in human. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. This domain is found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins, that perform a variety of functions including cell volume regulation, regulation of intracelluar chloride concentration, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles and transepithelial chloride transport. Length = 426

>gnl|CDD|216046 pfam00654, Voltage_CLC, Voltage gated chloride channel

 Score = 94.5 bits (236), Expect = 2e-21
 Identities = 34/124 (27%), Positives = 62/124 (50%), Gaps = 6/124 (4%)

Query: 103 DAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGM 162
             ++ + + +T +      +L+  +L  +   ++ G   P G+F P + +G+A GRLLG+
Sbjct: 224 GLIQLLLNGSTLS---LLLLLLLLLLKLLATALSLGSGAPGGIFAPSLFIGAALGRLLGL 280

Query: 163 AMGSY---TNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAK 219
            +           G +A+LG A+ +AG  R  ++  V+  ELT +  LL   M+ +LIA 
Sbjct: 281 LLPLLFPGIAPSPGAFALLGMAAFLAGVTRAPLTAIVLVFELTGSYSLLLPLMLAVLIAY 340

Query: 220 TVGD 223
            V  
Sbjct: 341 LVSR 344

This family of ion channels contains 10 or 12 transmembrane helices. Each protein forms a single pore. It has been shown that some members of this family form homodimers. In terms of primary structure, they are unrelated to known cation channels or other types of anion channels. Three ClC subfamilies are found in animals. ClC-1 is involved in setting and restoring the resting membrane potential of skeletal muscle, while other channels play important parts in solute concentration mechanisms in the kidney. These proteins contain two pfam00571 domains. Length = 345

>gnl|CDD|239964 cd04591, CBS_pair_EriC_assoc_euk_bac, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

 Score = 81.9 bits (203), Expect = 4e-19
 Identities = 50/168 (29%), Positives = 66/168 (39%), Gaps = 63/168 (37%)

Query: 262 KPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLA 321
            P V+ L     V  +  +L  T+HNGFPV+D     P         L G ILR+ LV+A
Sbjct: 1   VPLVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESP--------RLVGYILRSQLVVA 52

Query: 322 LKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYT 381
           LK                                            YID       +P+T
Sbjct: 53  LKN-------------------------------------------YID------PSPFT 63

Query: 382 VIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAF 429
           V    S+ K   LFR++GLRHLLVV +        +VGI+TR+DL   
Sbjct: 64  VSPRTSLEKVHQLFRKLGLRHLLVVDE------GRLVGIITRKDLLKA 105

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in CLC chloride channel family members have been associated with classic Bartter syndrome, Osteopetrosis, Dent's disease, idiopathic generalized epilepsy, and myotonia. Length = 105

>gnl|CDD|223116 COG0038, EriC, Chloride channel protein EriC [Inorganic ion transport and metabolism]

 Score = 77.8 bits (192), Expect = 2e-15
 Identities = 41/138 (29%), Positives = 67/138 (48%), Gaps = 4/138 (2%)

Query: 116 EFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYT---NIDQ 172
           E     +L+ F+L  +  L+++G   P G+F P + +G+A G   G  +G       ++ 
Sbjct: 306 EGGLLVLLLLFLLKLLATLLSYGSGAPGGIFAPSLFIGAALGLAFGALLGLLFPPSILEP 365

Query: 173 GLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNP-SIYE 231
           GL+A+LG A+ +A + R  ++  V+ LE+T N  LL   +I  LIA  V        IY 
Sbjct: 366 GLFALLGMAAFLAATTRAPLTAIVLVLEMTGNYQLLLPLLIACLIAYLVSRLLGGRPIYT 425

Query: 232 IILELKGLPFLDAHPEPW 249
            +L  +G P L       
Sbjct: 426 QLLARRGAPILREERAEP 443

Length = 443

>gnl|CDD|238233 cd00400, Voltage_gated_ClC, CLC voltage-gated chloride channel

 Score = 72.6 bits (179), Expect = 6e-14
 Identities = 29/100 (29%), Positives = 54/100 (54%), Gaps = 3/100 (3%)

Query: 122 ILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSY---TNIDQGLYAVL 178
           +L+  +L  +   +T G   P G+F P + +G+A G   G+ + +         G YA++
Sbjct: 283 LLLLLLLKLLATALTLGSGFPGGVFAPSLFIGAALGAAFGLLLPALFPGLVASPGAYALV 342

Query: 179 GAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIA 218
           G A+L+A  +R  ++  ++ LELT +  LL   M+ ++IA
Sbjct: 343 GMAALLAAVLRAPLTAILLVLELTGDYSLLLPLMLAVVIA 382

The ClC chloride channels catalyse the selective flow of Cl- ions across cell membranes, thereby regulating electrical excitation in skeletal muscle and the flow of salt and water across epithelial barriers. This domain is found in the halogen ions (Cl-, Br- and I-) transport proteins of the ClC family. The ClC channels are found in all three kingdoms of life and perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, transepithelial transport in animals, and the extreme acid resistance response in eubacteria. They lack any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. Unlike cation-selective ion channels, which form oligomers containing a single pore along the axis of symmetry, the ClC channels form two-pore homodimers with one pore per subunit without axial symmetry. Although lacking the typical voltage-sensor found in cation channels, all studied ClC channels are gated (opened and closed) by transmembrane voltage. The gating is conferred by the permeating ion itself, acting as the gating charge. In addition, eukaryotic and some prokaryotic ClC channels have two additional C-terminal CBS (cystathionine beta synthase) domains of putative regulatory function. Length = 383

>gnl|CDD|238504 cd01031, EriC, ClC chloride channel EriC

 Score = 69.5 bits (171), Expect = 8e-13
 Identities = 39/125 (31%), Positives = 65/125 (52%), Gaps = 6/125 (4%)

Query: 116 EFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYTNIDQGL- 174
            F  S +L+ F+L  I  ++++G   P G+F P++ +G+  G L G  +     I     
Sbjct: 279 NFSISLLLLIFVLRFIFTMLSYGSGAPGGIFAPMLALGALLGLLFGTILVQLGPIPISAP 338

Query: 175 --YAVLGAASLMAGSMRMTVSLCVIFLELTNNL-LLLPITMIVLLIAKTVGDSFN-PSIY 230
             +A+ G A+  A  +R  ++  ++  E+T N  LLLP+ M+V L+A  V D      IY
Sbjct: 339 ATFAIAGMAAFFAAVVRAPITAIILVTEMTGNFNLLLPL-MVVCLVAYLVADLLGGKPIY 397

Query: 231 EIILE 235
           E +LE
Sbjct: 398 EALLE 402

This domain is found in the EriC chloride transporters that mediate the extreme acid resistance response in eubacteria and archaea. This response allows bacteria to survive in the acidic environments by decarboxylation-linked proton utilization. As shown for Escherichia coli EriC, these channels can counterbalance the electric current produced by the outwardly directed virtual proton pump linked to amino acid decarboxylation. The EriC proteins belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. In Escherichia coli EriC, a glutamate residue that protrudes into the pore is thought to participate in gating by binding to a Cl- ion site within the selectivity filter. Length = 402

>gnl|CDD|235385 PRK05277, PRK05277, chloride channel protein; Provisional

 Score = 60.3 bits (147), Expect = 7e-10
 Identities = 37/120 (30%), Positives = 64/120 (53%), Gaps = 10/120 (8%)

Query: 123 LIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSY---TNIDQGLYAVLG 179
           L  F+   I  L+ FG   P G+F P++ +G+  G   GM   +     +I+ G +A+ G
Sbjct: 299 LFIFVARFITTLLCFGSGAPGGIFAPMLALGTLLGLAFGMVAAALFPQYHIEPGTFAIAG 358

Query: 180 AASLMAGSMRMTVSLCVIFLELTNN-LLLLPITMIVL---LIAKTVGDSFNPSIYEIILE 235
             +L A ++R  ++  V+ LE+T+N  L+LP+ +  L   L+A+ +G      IY  +LE
Sbjct: 359 MGALFAATVRAPLTGIVLVLEMTDNYQLILPLIITCLGATLLAQFLG---GKPIYSALLE 415

Length = 438

>gnl|CDD|234987 PRK01862, PRK01862, putative voltage-gated ClC-type chloride channel ClcB; Provisional

 Score = 50.5 bits (121), Expect = 1e-06
 Identities = 36/151 (23%), Positives = 66/151 (43%), Gaps = 12/151 (7%)

Query: 135 ITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSY---TNIDQGLYAVLGAASLMAGSMRMT 191
            T G     G+F P + +G+  G L G+AM +           YA++G  + +AG+ +  
Sbjct: 329 ATAGSGAVGGVFTPTLFVGAVVGSLFGLAMHALWPGHTSAPFAYAMVGMGAFLAGATQAP 388

Query: 192 VSLCVIFLELT-NNLLLLPITMIVLLIAKTVGDSFNP-SIYEIILELKGLPFLDAHPEPW 249
           +   ++  E+T +  ++LP  M+  ++A     +    S+YEI L        D      
Sbjct: 389 LMAILMIFEMTLSYQVVLP-LMVSCVVAYFTARALGTTSMYEITLRRHQ----DEAERER 443

Query: 250 MRTLTVGELIDAKPPVITLSGIEKVSQIVDV 280
           +RT  + ELI     V+  +    V+ +  V
Sbjct: 444 LRTTQMRELIQPAQTVVPPTA--SVADMTRV 472

Length = 574

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 42.8 bits (101), Expect = 3e-05
 Identities = 33/164 (20%), Positives = 59/164 (35%), Gaps = 54/164 (32%)

Query: 263 PPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLAL 322
             V+T+S  + V++ + ++     +G PV+D+              L G++    L+ AL
Sbjct: 1   RDVVTVSPDDTVAEALRLMLEHGISGLPVVDD-----------DGRLVGIVTERDLLRAL 49

Query: 323 KKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTV 382
                                        EG ++ +    + M               TV
Sbjct: 50  A----------------------------EGGLDPLVTVGDVM----------TRDVVTV 71

Query: 383 IESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDL 426
               S+ +A  L  + G+R L VV   +  G   +VGI+TR D+
Sbjct: 72  SPDTSLEEAAELMLEHGIRRLPVV---DDEGR--LVGIVTRSDI 110

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|238506 cd01034, EriC_like, ClC chloride channel family

 Score = 41.4 bits (98), Expect = 7e-04
 Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 3/103 (2%)

Query: 125 FFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLM 184
           F +L  +  L+++   +P GLF P + +G+  G LL   +GS   + QG   +LG A+ +
Sbjct: 286 FGLLKFLATLLSYWSGIPGGLFAPSLAVGAGLGSLLAALLGS---VSQGALVLLGMAAFL 342

Query: 185 AGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNP 227
           AG  +  ++  VI +E+T +  +L   +   L+A  V     P
Sbjct: 343 AGVTQAPLTAFVIVMEMTGDQQMLLPLLAAALLASGVSRLVCP 385

These protein sequences, closely related to the ClC Eric family, are putative halogen ion (Cl-, Br- and I-) transport proteins found in eubacteria. They belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. Length = 390

>gnl|CDD|239983 cd04610, CBS_pair_ParBc_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

 Score = 38.2 bits (89), Expect = 0.001
 Identities = 14/33 (42%), Positives = 22/33 (66%)

Query: 265 VITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVV 297
           VIT+S    V  ++ +++ T H+GFPV+D G V
Sbjct: 4   VITVSPDNTVKDVIKLIKETGHDGFPVVDNGKV 36

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 107

>gnl|CDD|201313 pfam00571, CBS, CBS domain

 Score = 36.0 bits (84), Expect = 0.002
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 5/52 (9%)

Query: 376 NTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLR 427
                TV    S+ +A+ L R+ G+  L VV +        +VGI+T +DL 
Sbjct: 6   TPDVVTVPPDTSLEEALELMRENGISRLPVVDEDGK-----LVGIVTLRDLL 52

CBS domains are small intracellular modules that pair together to form a stable globular domain. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain. CBS domains have been shown to bind ligands with an adenosyl group such as AMP, ATP and S-AdoMet. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role making proteins sensitive to adenosyl carrying ligands. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP. The CBS domains from IMPDH and the chloride channel CLC2 bind ATP. Length = 57

>gnl|CDD|238505 cd01033, ClC_like, Putative ClC chloride channel

 Score = 39.2 bits (92), Expect = 0.003
 Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 3/100 (3%)

Query: 119 PSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYTNIDQ-GLYAV 177
            S +LI  +L  +  L+        GL  P + +G+  G LLG+   +         +A+
Sbjct: 278 LSLLLILLVLKIVATLLALRAGAYGGLLTPSLALGALLGALLGIVWNALLPPLSIAAFAL 337

Query: 178 LGAASLMAGSMRMTVSLCVIFLELT--NNLLLLPITMIVL 215
           +GAA+ +A + +  ++  ++ LE T  N L L+P+ + V 
Sbjct: 338 IGAAAFLAATQKAPLTALILVLEFTRQNPLFLIPLMLAVA 377

Clc proteins are putative halogen ion (Cl-, Br- and I-) transporters found in eubacteria. They belong to the ClC superfamily of halogen ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. Length = 388

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	447
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	100.0
KOG0475	696	consensus Cl- channel CLC-3 and related proteins (	100.0
PRK01862	574	putative voltage-gated ClC-type chloride channel C	100.0
KOG0476	931	consensus Cl- channel CLC-2 and related proteins (	100.0
cd03684	445	ClC_3_like ClC-3-like chloride channel proteins. T	99.96
cd03685	466	ClC_6_like ClC-6-like chloride channel proteins. T	99.95
cd03683	426	ClC_1_like ClC-1-like chloride channel proteins. T	99.93
PRK01610	418	putative voltage-gated ClC-type chloride channel C	99.93
cd01031	402	EriC ClC chloride channel EriC. This domain is fou	99.92
cd01036	416	ClC_euk Chloride channel, ClC. These domains are f	99.92
PF00654	355	Voltage_CLC: Voltage gated chloride channel Mutati	99.91
PRK05277	438	chloride channel protein; Provisional	99.91
COG0038	443	EriC Chloride channel protein EriC [Inorganic ion	99.9
cd01034	390	EriC_like ClC chloride channel family. These prote	99.88
cd01033	388	ClC_like Putative ClC chloride channel. Clc protei	99.88
cd00400	383	Voltage_gated_ClC CLC voltage-gated chloride chann	99.84
cd03682	378	ClC_sycA_like ClC sycA-like chloride channel prote	99.83
PRK03655	414	putative ion channel protein; Provisional	99.71
COG2524	294	Predicted transcriptional regulator, contains C-te	99.68
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	99.66
COG3448	382	CBS-domain-containing membrane protein [Signal tra	99.66
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	99.65
COG4109	432	Predicted transcriptional regulator containing CBS	99.63
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	99.52
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	99.5
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	99.5
COG3620	187	Predicted transcriptional regulator with C-termina	99.49
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	99.49
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	99.48
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	99.48
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	99.47
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	99.44
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	99.44
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	99.44
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	99.42
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	99.42
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	99.42
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	99.42
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	99.41
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	99.4
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	99.4
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	99.39
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	99.39
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	99.39
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	99.39
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	99.39
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	99.39
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	99.39
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	99.38
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	99.38
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	99.38
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	99.38
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	99.37
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	99.37
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	99.37
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	99.36
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	99.36
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	99.36
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	99.36
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	99.36
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	99.36
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	99.35
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	99.35
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	99.35
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	99.35
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	99.34
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	99.34
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	99.33
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	99.32
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	99.32
PLN02274	505	inosine-5'-monophosphate dehydrogenase	99.32
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	99.32
PRK11573	413	hypothetical protein; Provisional	99.32
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	99.31
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	99.31
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	99.31
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	99.31
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	99.31
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	99.31
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	99.31
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	99.3
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	99.3
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	99.3
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	99.3
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	99.29
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	99.29
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	99.29
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	99.29
cd00400	383	Voltage_gated_ClC CLC voltage-gated chloride chann	99.28
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	99.28
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	99.27
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	99.27
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	99.26
PRK14869	546	putative manganese-dependent inorganic pyrophospha	99.26
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	99.26
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	99.25
COG0517	117	FOG: CBS domain [General function prediction only]	99.25
cd01031	402	EriC ClC chloride channel EriC. This domain is fou	99.25
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	99.24
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	99.24
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	99.22
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	99.2
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	99.18
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	99.17
COG2905	610	Predicted signal-transduction protein containing c	99.16
COG1253	429	TlyC Hemolysins and related proteins containing CB	99.14
PRK05277	438	chloride channel protein; Provisional	99.14
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	99.08
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	99.06
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	98.98
cd03682	378	ClC_sycA_like ClC sycA-like chloride channel prote	98.93
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	98.92
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	98.79
PRK01862	574	putative voltage-gated ClC-type chloride channel C	98.78
PF00654	355	Voltage_CLC: Voltage gated chloride channel Mutati	98.78
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	98.76
COG0038	443	EriC Chloride channel protein EriC [Inorganic ion	98.74
PRK01610	418	putative voltage-gated ClC-type chloride channel C	98.68
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	98.67
cd01036	416	ClC_euk Chloride channel, ClC. These domains are f	98.64
cd03685	466	ClC_6_like ClC-6-like chloride channel proteins. T	98.63
cd01034	390	EriC_like ClC chloride channel family. These prote	98.59
cd01033	388	ClC_like Putative ClC chloride channel. Clc protei	98.59
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	98.54
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	98.51
cd03684	445	ClC_3_like ClC-3-like chloride channel proteins. T	98.48
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	98.48
COG3448	382	CBS-domain-containing membrane protein [Signal tra	98.33
PRK03655	414	putative ion channel protein; Provisional	98.31
cd03683	426	ClC_1_like ClC-1-like chloride channel proteins. T	98.3
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	98.2
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	98.12
PRK14869	546	putative manganese-dependent inorganic pyrophospha	98.05
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	98.01
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	97.91
COG3620	187	Predicted transcriptional regulator with C-termina	97.87
COG2524	294	Predicted transcriptional regulator, contains C-te	97.85
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	97.84
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	97.72
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	97.67
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	97.62
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	97.62
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	97.61
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	97.58
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	97.57
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	97.56
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	97.53
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	97.52
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	97.52
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	97.51
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	97.51
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	97.5
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	97.47
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	97.46
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	97.46
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	97.45
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	97.45
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	97.43
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	97.41
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	97.41
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	97.39
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	97.38
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	97.38
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	97.38
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	97.37
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	97.37
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	97.36
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	97.36
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	97.35
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	97.35
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	97.35
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	97.34
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	97.34
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	97.33
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	97.33
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	97.33
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	97.33
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	97.32
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	97.32
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	97.32
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	97.32
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	97.32
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	97.3
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	97.3
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	97.27
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	97.26
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	97.25
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	97.24
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	97.23
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	97.23
PLN02274	505	inosine-5'-monophosphate dehydrogenase	97.22
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	97.22
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	97.21
COG0517	117	FOG: CBS domain [General function prediction only]	97.2
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	97.2
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	97.2
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	97.2
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	97.19
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	97.19
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	97.19
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	97.19
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	97.15
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	97.14
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	97.13
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	97.11
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	97.1
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	97.09
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	97.08
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	97.08
COG4109	432	Predicted transcriptional regulator containing CBS	97.06
COG2905	610	Predicted signal-transduction protein containing c	96.89
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	96.88
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	96.86
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	96.83
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	96.82
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	96.81
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	96.63
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	96.6
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	96.6
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	96.56
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	96.55
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	96.33
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	96.11
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	95.4
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	95.11
PRK11573	413	hypothetical protein; Provisional	94.66
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	94.24
COG1253	429	TlyC Hemolysins and related proteins containing CB	93.69
KOG0476	931	consensus Cl- channel CLC-2 and related proteins (	92.84
KOG0475	696	consensus Cl- channel CLC-3 and related proteins (	90.8
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	89.25
KOG2118	498	consensus Predicted membrane protein, contains two	86.94
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	86.77
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	83.64
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	80.07

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=100.00  E-value=7.3e-81  Score=626.57  Aligned_cols=406  Identities=61%  Similarity=0.975  Sum_probs=373.5

Q ss_pred             hhcccceeeEeeehhcccCCcchHHHHHHHHHHHHHhHcchhhhhcCCCCCCCCCC-CCCCCCCCCCcccccCCCCCcch
Q 013262           14 KAENHSSTCIFTLFHCRKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPE-TCPTNGRSGNFKQFNCPNGHYND   92 (447)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~v~~~t~~~~~~~~~~~~c~~~~~~~~~-~c~~~~~~~~~~~~~c~~~~y~~   92 (447)
                      |.+|.+.+.+..+  ++++|.+|++|+++|+++|++++|.+|++..|+||+.+..+ .||+         |+||+|+|||
T Consensus       355 N~Ln~~~~~~r~~--~~k~k~~kvlea~~Vs~~ts~~af~l~~l~~C~P~~~~~~~~~~p~---------f~Cp~~~YNd  423 (762)
T KOG0474|consen  355 NYLNLKKVLRRYN--YEKGKIGKVLEALLVSLVTSVLAFGLPFLADCQPCPPSITEGQCPT---------FFCPDGEYND  423 (762)
T ss_pred             HHHHHHHHHHHHh--ccCchHHHHHHHHHHHHHHHHHHhhhHHHhcCCCCCCCcccccCcc---------ccCCCCchhH
Confidence            5566666655555  89999999999999999999999999999999999876443 6764         9999999999


Q ss_pred             hHHhhcCChHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHhhccCCcch
Q 013262           93 LATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYTNIDQ  172 (447)
Q Consensus        93 l~~l~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~k~~~~~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~~~  172 (447)
                      ||+|||++++++|++|||.++ ++|...+|++|++.+++++++|||+.+|.|+|+|++++||++||++|.++.....++|
T Consensus       424 lAtL~fnt~ddaVrnLFh~~~-~ef~~~tL~iFfv~yf~L~~~TfGi~vpsGlFiP~iL~GAa~GRlvg~~l~~~~~id~  502 (762)
T KOG0474|consen  424 LATLFFNTNDDAVRNLFHSPT-NEFGILTLAIFFVLYFFLACWTFGIAVPSGLFIPVILTGAAYGRLVGMLLGSYTNIDP  502 (762)
T ss_pred             HHHHHcCCcHHHHHHHhcCCC-CccchhHHHHHHHHHHHHHHHHhcccccccchhHHHHhhHHHHHHHHHHHHHhhccCc
Confidence            999999999999999999987 9999999999999999999999999999999999999999999999999999889999


Q ss_pred             HHHHHHHHHHHHHhhhchhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhhcCCchHHHHHHhhCCCCCCCCCCccccc
Q 013262          173 GLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILELKGLPFLDAHPEPWMRT  252 (447)
Q Consensus       173 ~~~a~~G~aa~~~g~~~~p~s~~vi~~E~t~~~~~~~p~~ia~~va~~v~~~l~~sIYd~~l~~kg~p~l~~~~~~~l~~  252 (447)
                      |.||++||||+|||++||++|.+||++|+| +..+++|+|++.++|+||+|.|+++|||.+++.||+|+++|++++.+++
T Consensus       503 G~yAllGAAa~LGG~mRMTvSL~VIl~E~T-n~~~~lPiMlvLliaK~VGD~FNegiYd~~i~LkgvP~Le~~pe~~mr~  581 (762)
T KOG0474|consen  503 GLYALLGAAAFLGGVMRMTVSLCVILLELT-NNLLLLPIMLVLLIAKTVGDSFNEGIYDIIIQLKGVPFLEWEPEPYMRN  581 (762)
T ss_pred             hHHHHHhHHHHhCCeEEEEeeeehHHHHhh-hhhhhhHHHHHHHHHHHHHhhhhhhhHHHhhhccCCccccCCCchHhhh
Confidence            999999999999999999999999999999 7888999999999999999999999999999999999999999999999


Q ss_pred             ccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcc
Q 013262          253 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKR  332 (447)
Q Consensus       253 l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~  332 (447)
                      ++|+|+|++  ++++++..++++.+.++|+++.||+|||||+...      ++.+++.|+|.|++|..+|++++|.++..
T Consensus       582 L~a~ev~~~--pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~------~~~~~l~GlILRshl~vlL~~~~f~~~~~  653 (762)
T KOG0474|consen  582 LTAGEVMSK--PVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPS------NEAGRLHGLILRSHLLVLLKKRVFVEESR  653 (762)
T ss_pred             hhHhhhccC--CeEEEechhhHHHHHHHHHhcCcCCCccccCCCC------ccchhhhHHHHHHHHHHHHHhhhhhccCc
Confidence            999999999  9999999999999999999999999999998621      12268999999999999999999886654


Q ss_pred             cchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccC
Q 013262          333 RTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAA  412 (447)
Q Consensus       333 ~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~  412 (447)
                      ....+...+..+.+|+.+...+++|+.+++++.+.++|+.++|+++|++|.+++++.+++.+|++.|+||+.||++    
T Consensus       654 ~~~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~----  729 (762)
T KOG0474|consen  654 STFDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPK----  729 (762)
T ss_pred             cccCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEecC----
Confidence            4444444567888999998889999999999999999999999999999999999999999999999999999998    


Q ss_pred             CCCcEEEEEeHHHHHHHHHhhhcCccccccccC
Q 013262          413 GVSPVVGILTRQDLRAFNILTAFPHLERSKSGQ  445 (447)
Q Consensus       413 g~~~lvGIITr~DLl~~~~~~~~~~~~~~~~~~  445 (447)
                       .++++|++||+|+.++...+..++..+.+.++
T Consensus       730 -~~~~~gilTR~D~~~~~~l~~~~~v~~~~~~~  761 (762)
T KOG0474|consen  730 -TNRVVGILTRKDLARYRILGLEPHVDELKMGK  761 (762)
T ss_pred             -CCceeEEEehhhhhhHHHhccccccccccccc
Confidence             66789999999999999888888887776654

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.2e-50  Score=409.61  Aligned_cols=350  Identities=26%  Similarity=0.414  Sum_probs=269.4

Q ss_pred             cccceeeEeeehhcccCCcchHHHHHHHHHHHHHhHcchhhhhcC-CCCCCCCCCCCCCCCCCCCcccccCCCCCcchhH
Q 013262           16 ENHSSTCIFTLFHCRKGKMHKLLLALSVSVFTSVCQYCLPFLADC-KACDPSFPETCPTNGRSGNFKQFNCPNGHYNDLA   94 (447)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~e~~~v~~~t~~~~~~~~~~~~c-~~~~~~~~~~c~~~~~~~~~~~~~c~~~~y~~l~   94 (447)
                      .-+.++|+++|..  +...++++|+++++++|+.++|++|+++.- .+.-..++++|+..+..+     .|..--|    
T Consensus       328 r~n~~~~~~rK~~--~lg~~pv~ev~~vt~iTaiIs~~np~~r~~~~e~i~~Lf~~C~~~~s~~-----l~~~~~~----  396 (696)
T KOG0475|consen  328 RLNIRFCRFRKSS--KLGKFPVLEVVFVTLVTAIISLFNPETRFNMSELITILFNKCSPSSSTS-----LPETTVY----  396 (696)
T ss_pred             HHHHHHHhccchh--hccCCcchhHHHHHHHHHHHHhcCHHHHhhHHHHHHHHHhhcCCccccc-----CcccchH----
Confidence            3455678888877  566789999999999999999999998632 111122455665432221     1111011    


Q ss_pred             HhhcCChHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHhhcc-------
Q 013262           95 TLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSY-------  167 (447)
Q Consensus        95 ~l~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~k~~~~~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~-------  167 (447)
                                            -..+.|++.+++|+++|++|+|+++|+|+|+|||++||++||++|.++.+.       
T Consensus       397 ----------------------~~~~~L~~a~i~k~~~t~ftfGakvP~GifvPSmaiGA~aGr~vG~~~e~l~~~~~~~  454 (696)
T KOG0475|consen  397 ----------------------SAAILLLLALILKIALTIFTFGAKVPAGIFVPSLAIGAIAGRAVGIIVEQLAQNPDFN  454 (696)
T ss_pred             ----------------------HHHHHHHHHHHHHHHHHHhhhhccCccceecchHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence                                  014467777889999999999999999999999999999999999776652       


Q ss_pred             ----CCcchHHHHHHHHHHHHHhhhchhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhhc-CCchHHHHHHhhCCCCC
Q 013262          168 ----TNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSF-NPSIYEIILELKGLPFL  242 (447)
Q Consensus       168 ----~~~~~~~~a~~G~aa~~~g~~~~p~s~~vi~~E~t~~~~~~~p~~ia~~va~~v~~~l-~~sIYd~~l~~kg~p~l  242 (447)
                          .++.||+||++||||.|+|++|+|+|.+|||||+||++.+++|+|+|+++|+|+++.+ ..+|||.++++||+||+
T Consensus       455 ~fg~~ci~Pg~Ya~vGaAA~LsGvtrltvtlVVImFELTG~l~~IlPlm~av~~SkwI~d~~gk~gIyda~I~~ng~P~l  534 (696)
T KOG0475|consen  455 LFGLSCATPGAYALVGAAATLSGVTRLTVTLVVIMFELTGALNYILPLMLAVMISKWIGDGLGKTGIYDAHIELNGYPFL  534 (696)
T ss_pred             ccchhhcCchHHHHHHHHHHhcCcceeeEEEEEEeeeccCcceeHHHHHHHHHHHHHHHhccccchHHHHHHHhcCCCCc
Confidence                3588999999999999999999999999999999999999999999999999999999 88999999999999999


Q ss_pred             CCCCCcccccccccccccCC---CCeeEecCC-CCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHH
Q 013262          243 DAHPEPWMRTLTVGELIDAK---PPVITLSGI-EKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHL  318 (447)
Q Consensus       243 ~~~~~~~l~~l~v~diM~~~---~~vv~l~~~-~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL  318 (447)
                      +.+.+..  +.-..++|.+.   +...+++.+ ++++|+..+|+++++++||||-++         ++++++|+|.++|+
T Consensus       535 ~~k~e~~--~t~~~~v~~p~~~~~~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~---------~sq~lvGfv~rr~l  603 (696)
T KOG0475|consen  535 DSKSEFS--STLAIPVMEPCRSESCLIVITQDSMTLEDLESLMEDTDFSGFPVVLSE---------DSQRLVGFVLRRNL  603 (696)
T ss_pred             ccccccc--cchhhhhhchhcCchhheeccccceeHHHHHHHHhhcccCCceEEEcc---------ccceeEEEEchHHH
Confidence            7765543  33355666652   135555554 899999999999999999998765         45899999999999


Q ss_pred             HHHHHhhhhhhhcccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHc
Q 013262          319 VLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQV  398 (447)
Q Consensus       319 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~  398 (447)
                      ...+.+..-.++..       . ..+ ..+.++.      .....+.+..++++++|+.+|++|..++|++.++++|++.
T Consensus       604 ~~~i~~ar~~q~~~-------~-~~~-~~f~~~~------~~~~~~~~~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~l  668 (696)
T KOG0475|consen  604 FLAILNARKIQSFI-------V-TTS-IYFNDPS------PSAVAGIPSRLDLKDILDMTPFTVTDLTPMETVVDLFRKL  668 (696)
T ss_pred             HHHHhhhccccccc-------e-ecc-cccCCCC------ccccCCCCCCcCceeeccCCcccccccCcHHHHHHHHHhh
Confidence            87665421111000       0 000 0111110      1111123456889999999999999999999999999999


Q ss_pred             CCCEEEEEeCcccCCCCcEEEEEeHHHHHHHH
Q 013262          399 GLRHLLVVPKYEAAGVSPVVGILTRQDLRAFN  430 (447)
Q Consensus       399 gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~  430 (447)
                      |++++.|.+      +|++.|+||++|+++..
T Consensus       669 g~~~~~v~~------~G~l~Giitkkd~l~~~  694 (696)
T KOG0475|consen  669 GLRQILVTK------NGILLGIITKKDCLRHT  694 (696)
T ss_pred             CceEEEEcc------CCeeEeeeehHHHHHhh
Confidence            999998875      46799999999999864

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=100.00  E-value=6e-44  Score=381.31  Aligned_cols=275  Identities=18%  Similarity=0.246  Sum_probs=238.3

Q ss_pred             hcCChHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHhhccCC---cchH
Q 013262           97 LLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYTN---IDQG  173 (447)
Q Consensus        97 ~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~k~~~~~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~~---~~~~  173 (447)
                      ++++|++.++.+++.    .+.+..++.++++|+++|++|+|+|+|||+|+|++++||++|+++|.+++...+   ..|+
T Consensus       295 ~~g~G~~~i~~~~~~----~~~~~~l~~~~~~K~~~t~~t~g~G~~GG~f~P~l~iGa~~G~~~g~~~~~~~~~~~~~~~  370 (574)
T PRK01862        295 VWGNGYSVVNTILHA----PWTWQALVAVLVAKLIATAATAGSGAVGGVFTPTLFVGAVVGSLFGLAMHALWPGHTSAPF  370 (574)
T ss_pred             HhcCCHHHHHHHHcC----CchHHHHHHHHHHHHHHHHHHHccCCCccchhhHHHHHHHHHHHHHHHHHHhCCCcccchH
Confidence            356788899998864    356778888899999999999999999999999999999999999999876322   4577


Q ss_pred             HHHHHHHHHHHHhhhchhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhhc-CCchHHHHHHhhCCCCCCCCCCccccc
Q 013262          174 LYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSF-NPSIYEIILELKGLPFLDAHPEPWMRT  252 (447)
Q Consensus       174 ~~a~~G~aa~~~g~~~~p~s~~vi~~E~t~~~~~~~p~~ia~~va~~v~~~l-~~sIYd~~l~~kg~p~l~~~~~~~l~~  252 (447)
                      .|+++||||+++|++|+|++++++++|+|+++.+++|+|+++++|+++++.+ ++++|+.++++++.+    .+...++.
T Consensus       371 ~~a~vGmaa~~aa~~~aPlt~i~l~~Elt~~~~~~~P~~ia~~~a~~v~~~~~~~~iy~~~~~~~~~~----~~~~~L~~  446 (574)
T PRK01862        371 AYAMVGMGAFLAGATQAPLMAILMIFEMTLSYQVVLPLMVSCVVAYFTARALGTTSMYEITLRRHQDE----AERERLRT  446 (574)
T ss_pred             HHHHHHHHHHHHHHHccHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHhCCCChHHHHHHhcccc----chhhHHhh
Confidence            8999999999999999999999999999999999999999999999999999 899999999988642    24556888


Q ss_pred             ccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcc
Q 013262          253 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKR  332 (447)
Q Consensus       253 l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~  332 (447)
                      ++|+|+|++  +..+++++++++|+.+.+++++++.+||+|++           ++++|+|+.+|+.+.+.+..   +  
T Consensus       447 ~~V~dim~~--~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~-----------g~lvGiVt~~dL~~~l~~~~---~--  508 (574)
T PRK01862        447 TQMRELIQP--AQTVVPPTASVADMTRVFLEYPVKYLYVVDDD-----------GRFRGAVALKDITSDLLDKR---D--  508 (574)
T ss_pred             CcHHHHhcC--CCceeCCCCCHHHHHHHHHhCCCceEEEEcCC-----------CeEEEEEEHHHHHHHhhccc---c--
Confidence            999999998  88899999999999999999999999999987           89999999999976443211   0  


Q ss_pred             cchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccC
Q 013262          333 RTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAA  412 (447)
Q Consensus       333 ~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~  412 (447)
                                                       ....++.++|++++.++++|+++.+++++|.+.+.+++||+|+   +
T Consensus       509 ---------------------------------~~~~~v~dim~~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~---~  552 (574)
T PRK01862        509 ---------------------------------TTDKTAADYAHTPFPLLTPDMPLGDALEHFMAFQGERLPVVES---E  552 (574)
T ss_pred             ---------------------------------cccchHHHhccCCCeeECCCCCHHHHHHHHHhcCCCeeeeEeC---C
Confidence                                             0012345677888899999999999999999999999999987   3


Q ss_pred             CCCcEEEEEeHHHHHHHHHhh
Q 013262          413 GVSPVVGILTRQDLRAFNILT  433 (447)
Q Consensus       413 g~~~lvGIITr~DLl~~~~~~  433 (447)
                      ++++++|+||++|+++++.+.
T Consensus       553 ~~~~liGvIt~~DIl~~l~~~  573 (574)
T PRK01862        553 ASPTLAGVVYKTSLLDAYRRM  573 (574)
T ss_pred             CCCeEEEEEEHHHHHHHHHhh
Confidence            336899999999999988653

>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=100.00  E-value=5.2e-40  Score=336.93  Aligned_cols=260  Identities=27%  Similarity=0.455  Sum_probs=207.8

Q ss_pred             cchHHHHHHHHHHHHHhHcchhhhh-cCCCCC-----CCCCCCCCCCCCCCCcccccCCCCCcchhHHhhcCChHHHHHH
Q 013262           34 MHKLLLALSVSVFTSVCQYCLPFLA-DCKACD-----PSFPETCPTNGRSGNFKQFNCPNGHYNDLATLLLTTNDDAVRN  107 (447)
Q Consensus        34 ~~~~~e~~~v~~~t~~~~~~~~~~~-~c~~~~-----~~~~~~c~~~~~~~~~~~~~c~~~~y~~l~~l~~~~~~~~i~~  107 (447)
                      .+|++-..+++++.+++.|++.+-. ....+.     .+.+.+|.= .... +..-.||.+.+..    +          
T Consensus       369 k~~llyp~~~a~v~ssltfP~GlG~f~aG~l~f~etl~~fF~Nctw-~~~~-~~~~~~~~~~~~h----W----------  432 (931)
T KOG0476|consen  369 KSRLLYPAFIALVFSSLTFPPGLGQFLAGRLSFRETLVDFFDNCTW-WVQT-NDSELCPAHILTH----W----------  432 (931)
T ss_pred             hCccHHHHHHHHHHhheecCCcccccccccccHHhHHHHHhhcCee-eecC-CCcCCCChhhhhh----h----------
Confidence            3577888999999999999987532 111111     123445530 0000 1112344332211    0          


Q ss_pred             HhcCCCCCC-cchHHHHHHHHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHhhcc-----------CCcchHHH
Q 013262          108 IFSSNTPTE-FQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSY-----------TNIDQGLY  175 (447)
Q Consensus       108 l~~~~~~~~-~~~~~l~~~~~~k~~~~~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~-----------~~~~~~~~  175 (447)
                       .+  +.+. -.+.+|++++++||++++++..+.+|+|+|+|.++|||++||++|+.+...           ..+.||.|
T Consensus       433 -~~--p~g~~~~f~tL~lf~l~~F~~siia~TipvPsG~FmPvFViGAafGRlvGE~m~~lfP~Gi~~~gi~~~I~PG~Y  509 (931)
T KOG0476|consen  433 -YH--PEGDVSIFGTLVLFFLMYFWMSIIATTIPVPSGVFMPVFVIGAAFGRLVGEIMAVLFPEGIRGGGITPPIHPGGY  509 (931)
T ss_pred             -cC--CCCceeeHHHHHHHHHHHHHHHHHHhccccCccceeeeeeechhhhhhhhhhheeecccccccCCccCccccchh
Confidence             00  0111 235578899999999999999999999999999999999999999876542           35889999


Q ss_pred             HHHHHHHHHHhhhchhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhhcCCchHHHHHHhhCCCCCCCCCCcc--cccc
Q 013262          176 AVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILELKGLPFLDAHPEPW--MRTL  253 (447)
Q Consensus       176 a~~G~aa~~~g~~~~p~s~~vi~~E~t~~~~~~~p~~ia~~va~~v~~~l~~sIYd~~l~~kg~p~l~~~~~~~--l~~l  253 (447)
                      |+||||||-|++++ ++|.+||+||+||++..++|+|+|+++|+.|+.++..||||..++.|++|||+..+...  ...+
T Consensus       510 AVVGAAAfsGaVTH-TvSvAVIifElTGQl~hiLPVmIAVllaNAVa~~LQPSiYDSII~IKklPYLPDlpps~~~~h~v  588 (931)
T KOG0476|consen  510 AVVGAAAFSGAVTH-TVSVAVIIFELTGQLCHILPVMIAVLLANAVAASLQPSIYDSIIRIKKLPYLPDLPPSRSSVHTV  588 (931)
T ss_pred             hhhhhhhhccceee-eeeEEEEEEeeccchHHHHHHHHHHHHHHHHHHHhCcchhhheeeeccCCcCCCCCCcccceeEE
Confidence            99999999888877 99999999999999999999999999999999999999999999999999998765443  4678


Q ss_pred             cccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHh
Q 013262          254 TVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK  324 (447)
Q Consensus       254 ~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~  324 (447)
                      .|+|+|.+  ++.++..+.|.+|+.+.++.+..+.||+||+.         ++..|+|.|.|++|..++++
T Consensus       589 ~VE~iMV~--dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~---------esmiLlGSV~R~~L~~ll~~  648 (931)
T KOG0476|consen  589 KVEHIMVT--DVKYITKDTTYRELREALQTTTLRSFPLVESK---------ESMILLGSVARRYLTALLQR  648 (931)
T ss_pred             Eeeeeccc--cceeeeccCcHHHHHHHHHhCccceeccccCc---------ccceeeehhHHHHHHHHHHh
Confidence            89999999  99999999999999999998889999999986         66899999999999998876

>cd03684 ClC_3_like ClC-3-like chloride channel proteins

Probab=99.96  E-value=4.7e-29  Score=257.95  Aligned_cols=186  Identities=32%  Similarity=0.536  Sum_probs=143.4

Q ss_pred             CcchHHHHHHHHHHHHHhHcchhhhhc-CCCCCCCCCCCCCCCCCCCCcccccCCCCCcchhHHhhcCChHHHHHHHhcC
Q 013262           33 KMHKLLLALSVSVFTSVCQYCLPFLAD-CKACDPSFPETCPTNGRSGNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSS  111 (447)
Q Consensus        33 ~~~~~~e~~~v~~~t~~~~~~~~~~~~-c~~~~~~~~~~c~~~~~~~~~~~~~c~~~~y~~l~~l~~~~~~~~i~~l~~~  111 (447)
                      +.+++++++++++++++++|+.|+... ..+.-....+.|..              .+.+..++..        .. .+ 
T Consensus       241 ~~~~~~~~~l~~l~~~~l~~~~p~~~~~g~~~i~~l~~~~~~--------------~~~~~~~~~~--------~~-~~-  296 (445)
T cd03684         241 KRYPVLEVLLVALITALISFPNPYTRLDMTELLELLFNECEP--------------GDDNSLCCYR--------DP-PA-  296 (445)
T ss_pred             chhHHHHHHHHHHHHHHHHhChHHHccchhhHHHHHHhcCCC--------------cccccccccc--------cc-cC-
Confidence            356889999999999999999998742 11111111112211              1111100000        00 00 


Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHhhcc-----------------CCcchHH
Q 013262          112 NTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSY-----------------TNIDQGL  174 (447)
Q Consensus       112 ~~~~~~~~~~l~~~~~~k~~~~~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~-----------------~~~~~~~  174 (447)
                      +......+..|++++++|+++|++|+|+|+|||+|+|+|++||++|+++|.+++..                 ...+|+.
T Consensus       297 ~~~~~~~~~~l~~~~l~K~~~t~lt~gsG~~GG~f~P~l~iGA~~G~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  376 (445)
T cd03684         297 GDGVYKALWSLLLALIIKLLLTIFTFGIKVPAGIFVPSMAVGALFGRIVGILVEQLAYSYPDSIFFACCTAGPSCITPGL  376 (445)
T ss_pred             CccchhHHHHHHHHHHHHHHHHHHHHcCCCCcceeHHHHHHHHHHhHHHHHHHHHHHhhCCcccccccccCCCCccCchH
Confidence            00001234567788899999999999999999999999999999999999998743                 1367899


Q ss_pred             HHHHHHHHHHHhhhchhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhhc-CCchHHHHHHhhCCCCC
Q 013262          175 YAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSF-NPSIYEIILELKGLPFL  242 (447)
Q Consensus       175 ~a~~G~aa~~~g~~~~p~s~~vi~~E~t~~~~~~~p~~ia~~va~~v~~~l-~~sIYd~~l~~kg~p~l  242 (447)
                      ||++||||+++|++|+|+|+++|++|+||++++++|+|+++++|+++++.+ ++++||.++++||+||+
T Consensus       377 ~alvGmaa~~a~~~raPlt~ivlv~ElTg~~~~l~pl~ia~~iA~~vs~~~~~~siY~~~l~~~g~p~l  445 (445)
T cd03684         377 YAMVGAAAFLGGVTRMTVSLVVIMFELTGALNYILPLMIAVMVSKWVADAIGKEGIYDAHIHLNGYPFL  445 (445)
T ss_pred             HHHHHHHHHhcchhccchhhhheeeeccCCcccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCCC
Confidence            999999999999999999999999999999999999999999999999999 68999999999999986

This CD includes ClC-3, ClC-4, ClC-5 and ClC-Y1. ClC-3 was initially cloned from rat kidney. Expression of ClC-3 produces outwardly-rectifying Cl currents that are inhibited by protein kinase C activation. It has been suggested that ClC-3 may be a ubiquitous swelling-activated Cl channel that has very similar characteristics to those of native volume-regulated Cl currents. The function of ClC-4 is unclear. Studies of human ClC-4 have revealed that it gives rise to Cl currents that rapidly activate at positive voltages, and are sensitive to extracellular pH, with currents decreasing when pH falls below 6.5. ClC-4 is broadly distributed, especially in brain and heart. ClC-5 is predominantly expressed in the kidney, but can be found in the brain and liver. Mutations in the ClC-5 gene cause certain hereditary diseases, including Dent's disease, an X-chromosome linked syndrome characterised by proteinuria, hypercalciuria, and kidn

>cd03685 ClC_6_like ClC-6-like chloride channel proteins

Probab=99.95  E-value=5e-28  Score=251.54  Aligned_cols=125  Identities=66%  Similarity=1.113  Sum_probs=117.6

Q ss_pred             HHHHHHHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHhhcc---CCcchHHHHHHHHHHHHHhhhchhHHHHHH
Q 013262          121 SILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSY---TNIDQGLYAVLGAASLMAGSMRMTVSLCVI  197 (447)
Q Consensus       121 ~l~~~~~~k~~~~~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~---~~~~~~~~a~~G~aa~~~g~~~~p~s~~vi  197 (447)
                      .|++++++|+++|++|+|+|+|||+|+|+|++||++|+++|.+++..   ...+|+.||++||||+++|++|+|+|+++|
T Consensus       335 ~l~~~~~~k~l~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~~~~~~~~~~~~~~aliGmaa~lag~~raPlt~ivi  414 (466)
T cd03685         335 TLLIFFVLYYFLACWTFGIAVPSGLFIPMILIGAAYGRLVGILLGSYFGFTSIDPGLYALLGAAAFLGGVMRMTVSLTVI  414 (466)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHHccccCCCchHHHHHHHHHHHhHHhhhhHHHHHH
Confidence            56677788999999999999999999999999999999999998763   357899999999999999999999999999


Q ss_pred             HHHhhcCCchHHHHHHHHHHHHHHHhhcCCchHHHHHHhhCCCCCCCC
Q 013262          198 FLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILELKGLPFLDAH  245 (447)
Q Consensus       198 ~~E~t~~~~~~~p~~ia~~va~~v~~~l~~sIYd~~l~~kg~p~l~~~  245 (447)
                      ++|+||++++++|+|+++++|+++++.+++++||.++++||+||+++.
T Consensus       415 v~ElTg~~~~l~pl~ia~~iA~~va~~~~~siY~~~l~~~g~p~l~~~  462 (466)
T cd03685         415 LLELTNNLTYLPPIMLVLMIAKWVGDYFNEGIYDIIIQLKGVPFLHNG  462 (466)
T ss_pred             hhhhcCChhhHHHHHHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCC
Confidence            999999999999999999999999999989999999999999999753

This CD includes ClC-6, ClC-7 and ClC-B, C, D in plants. Proteins in this family are ubiquitous in eukarotes and their functions are unclear. They are expressed in intracellular organelles membranes. This family belongs to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. ClC chloride ion channel superfamily perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, and transepithelial transport in animals.

>cd03683 ClC_1_like ClC-1-like chloride channel proteins

Probab=99.93  E-value=8.3e-26  Score=232.74  Aligned_cols=123  Identities=33%  Similarity=0.642  Sum_probs=113.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHhhccC----------CcchHHHHHHHHHHHHHhhhc
Q 013262          120 SSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYT----------NIDQGLYAVLGAASLMAGSMR  189 (447)
Q Consensus       120 ~~l~~~~~~k~~~~~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~----------~~~~~~~a~~G~aa~~~g~~~  189 (447)
                      ..+++++++|+++|++|+|+|+|||+|+|+|++||++|+++|.+++...          ..+|+.||++||||+++|++|
T Consensus       293 ~~l~~~~~~K~~~t~~t~gsG~~GGif~Psl~iGa~~G~~~g~~~~~~~p~~~~~~~~~~~~~~~~alvGmaa~~a~~~r  372 (426)
T cd03683         293 LTLFLFIVVKFVLTALAITLPVPAGIFMPVFVIGAALGRLVGEIMAVLFPEGIRGGISNPIGPGGYAVVGAAAFSGAVTH  372 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCChhhhHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCCcCchHHHHHHHHHHHHHHHh
Confidence            3677788999999999999999999999999999999999999987643          267899999999999999999


Q ss_pred             hhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhhcCCchHHHHHHhhCCCCCC
Q 013262          190 MTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILELKGLPFLD  243 (447)
Q Consensus       190 ~p~s~~vi~~E~t~~~~~~~p~~ia~~va~~v~~~l~~sIYd~~l~~kg~p~l~  243 (447)
                      +|.++ +|++|+||++++++|+|+++++|+++++.+++++||.+++.||+||++
T Consensus       373 a~~t~-vlv~E~Tg~~~~llpl~ia~~ia~~v~~~~~~~iY~~~l~~~~~p~l~  425 (426)
T cd03683         373 TVSVA-VIIFELTGQISHLLPVLIAVLISNAVAQFLQPSIYDSIIKIKKLPYLP  425 (426)
T ss_pred             HHHHH-heeeeecCCcchHHHHHHHHHHHHHHHHhhCCCHHHHHHHhCCCCCCC
Confidence            87765 699999999999999999999999999999889999999999999986

This CD includes isoforms ClC-0, ClC-1, ClC-2 and ClC_K. ClC-1 is expressed in skeletal muscle and its mutation leads to both recessively and dominantly-inherited forms of muscle stiffness or myotonia. ClC-K is exclusively expressed in kidney. Similarly, mutation of ClC-K leads to nephrogenic diabetes insipidus in mice and Bartter's syndrome in human. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. This domain is found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins, that perform a variety of functions including cell volume regulation, regulation of intracelluar chloride concentration, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles and transepithelia

>PRK01610 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=99.93  E-value=5.9e-25  Score=225.62  Aligned_cols=137  Identities=23%  Similarity=0.338  Sum_probs=122.3

Q ss_pred             hcCChHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHhhccC---CcchH
Q 013262           97 LLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYT---NIDQG  173 (447)
Q Consensus        97 ~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~k~~~~~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~---~~~~~  173 (447)
                      .++++++.++.+++.    ++.+..++.+++.|+++|++|+|+|.|||+|+|++++||++|.++|.+++...   ...+.
T Consensus       277 ~~G~G~~~i~~~~~~----~~~~~~l~~l~l~K~~~t~lt~gsG~~GG~f~P~l~iGa~~G~~~g~~~~~~~~~~~~~~~  352 (418)
T PRK01610        277 VWGNGYSVVQSFLTA----PPLLMLIAGIFLCKLLAVLASSGSGAPGGVFTPTLFVGLAIGMLYGRSLGLWLPDGEEITL  352 (418)
T ss_pred             HhCCcHHHHHHHHcC----ChhHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCcccchH
Confidence            346788888888853    35566777778999999999999999999999999999999999999998532   23368


Q ss_pred             HHHHHHHHHHHHhhhchhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhhc-CCchHHHHHHhh
Q 013262          174 LYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSF-NPSIYEIILELK  237 (447)
Q Consensus       174 ~~a~~G~aa~~~g~~~~p~s~~vi~~E~t~~~~~~~p~~ia~~va~~v~~~l-~~sIYd~~l~~k  237 (447)
                      .||++||+|+++|++|+|++++++++|+||++++++|+|+++++|+++++.+ ++++|+.++..+
T Consensus       353 ~~a~vGmaA~laa~~~aPltaivl~~Eltg~~~~~~p~~ia~~ia~~vs~~~~~~siy~~~~~~~  417 (418)
T PRK01610        353 LLGLTGMATLLAATTHAPIMSTLMICEMTGEYQLLPGLLIACVIASVISRTLRRDSIYRQHTAEH  417 (418)
T ss_pred             HHHHHHHHHHHHHHHccHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHhCCCCchHHHHhcc
Confidence            9999999999999999999999999999999999999999999999999999 999999998764

>cd01031 EriC ClC chloride channel EriC

Probab=99.92  E-value=6.5e-25  Score=225.13  Aligned_cols=133  Identities=27%  Similarity=0.510  Sum_probs=121.9

Q ss_pred             CChHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHhhccC---CcchHHH
Q 013262           99 TTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYT---NIDQGLY  175 (447)
Q Consensus        99 ~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~k~~~~~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~---~~~~~~~  175 (447)
                      +++++.++.+++.    ++++..++.+++.|+++|++|+|+|.|||+|+|++++||++|+++|++++...   ..+|+.|
T Consensus       266 g~G~~~i~~~~~~----~~~~~~l~~~~~~K~~~t~lt~~~G~~GG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~  341 (402)
T cd01031         266 GGGHGLILSLAGG----NFSISLLLLIFVLRFIFTMLSYGSGAPGGIFAPMLALGALLGLLFGTILVQLGPIPISAPATF  341 (402)
T ss_pred             CCHHHHHHHHHcC----CchHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhcCcccccHHHH
Confidence            4567778888753    46788888999999999999999999999999999999999999999988632   4789999


Q ss_pred             HHHHHHHHHHhhhchhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhhc-CCchHHHHHH
Q 013262          176 AVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSF-NPSIYEIILE  235 (447)
Q Consensus       176 a~~G~aa~~~g~~~~p~s~~vi~~E~t~~~~~~~p~~ia~~va~~v~~~l-~~sIYd~~l~  235 (447)
                      |++||+|+++|++|+|++++++++|+||++++++|+|+++++|+++++.+ ++++||.+++
T Consensus       342 a~~G~aa~~a~~~~aPlta~vl~~Eltg~~~~l~p~~ia~~ia~~v~~~~~~~siY~~~l~  402 (402)
T cd01031         342 AIAGMAAFFAAVVRAPITAIILVTEMTGNFNLLLPLMVVCLVAYLVADLLGGKPIYEALLE  402 (402)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHhCCCChhHHHhC
Confidence            99999999999999999999999999999999999999999999999999 9999998874

This domain is found in the EriC chloride transporters that mediate the extreme acid resistance response in eubacteria and archaea. This response allows bacteria to survive in the acidic environments by decarboxylation-linked proton utilization. As shown for Escherichia coli EriC, these channels can counterbalance the electric current produced by the outwardly directed virtual proton pump linked to amino acid decarboxylation. The EriC proteins belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. In Escherichia coli EriC, a glutamate residue that protrudes into the pore is thought to participate in gating by binding to a Cl- ion site within the selectivity filter.

>cd01036 ClC_euk Chloride channel, ClC

Probab=99.92  E-value=4e-25  Score=227.11  Aligned_cols=111  Identities=42%  Similarity=0.841  Sum_probs=104.7

Q ss_pred             HHHHHHHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHhhccC-----------CcchHHHHHHHHHHHHHhhhc
Q 013262          121 SILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYT-----------NIDQGLYAVLGAASLMAGSMR  189 (447)
Q Consensus       121 ~l~~~~~~k~~~~~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~-----------~~~~~~~a~~G~aa~~~g~~~  189 (447)
                      .|+++++.|+++|++|+|+|+|||+|+|+|++||++|+++|.+++...           .++|+.||++||||+++|++|
T Consensus       295 ~l~~~~~~K~~~t~~t~~sg~pGG~f~Psl~iGA~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~alvGmaa~l~~~~r  374 (416)
T cd01036         295 TLLLFLLIYFWMSALAFGIAVPGGTFIPSLVIGAAIGRLVGLLVHRIAVAGIGAESATLWADPGVYALIGAAAFLGGTTR  374 (416)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHccccccccccCCccChHHHHHHHHHHHhhhhhc
Confidence            567788899999999999999999999999999999999999987642           378999999999999999999


Q ss_pred             hhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhhcCCchHH
Q 013262          190 MTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYE  231 (447)
Q Consensus       190 ~p~s~~vi~~E~t~~~~~~~p~~ia~~va~~v~~~l~~sIYd  231 (447)
                      +|+|++++++|+||++++++|+|+++++|+++++.+++|+||
T Consensus       375 ~Plt~~vi~~ElTg~~~~l~pl~ia~~ia~~v~~~~~~siY~  416 (416)
T cd01036         375 LTFSICVIMMELTGDLHHLLPLMVAILIAKAVADAFCESLYH  416 (416)
T ss_pred             chHhhhhheeeccCChhhHHHHHHHHHHHHHHHHhhCCCCCC
Confidence            999999999999999999999999999999999999889996

These domains are found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins that perform a variety of functions including cell volume regulation, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles, signal transduction and transepithelial transport. They are also involved in many pathophysiological processes and are responsible for a number of human diseases. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. Some proteins possess long C-terminal cytoplasmic regions containing two CBS (cystathionine beta synthase) domains of putative regulatory function.

>PF00654 Voltage_CLC: Voltage gated chloride channel Mutation in several of these channels lead to human disease

Probab=99.91  E-value=1.9e-24  Score=218.11  Aligned_cols=162  Identities=27%  Similarity=0.499  Sum_probs=129.7

Q ss_pred             EeeehhcccCCcchHHHHHHHHHHHHHhHcchhhhhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCcchhHHhhcCChH
Q 013262           23 IFTLFHCRKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFKQFNCPNGHYNDLATLLLTTND  102 (447)
Q Consensus        23 ~~~~~~~~~~~~~~~~e~~~v~~~t~~~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~~~~~~c~~~~y~~l~~l~~~~~~  102 (447)
                      .+++++. +.+.++++++++..++++++.++.|...                                      ++++++
T Consensus       190 ~~~~~~~-~~~~~~~l~~~i~gl~~g~l~~~~p~~~--------------------------------------~~g~G~  230 (355)
T PF00654_consen  190 KFFRKLK-RLKIPPILRPVIGGLVIGLLAFFFPEGS--------------------------------------VLGSGY  230 (355)
T ss_dssp             HHHHHHH-TTCHHHHHHHHHHHHHHHHHHHSSGG-S--------------------------------------GSSSST
T ss_pred             HHHHHhc-ccccchHHHHHHHHHHHHHHHHHHhhhc--------------------------------------ccCCcH
Confidence            3444444 3444566799999999999999976521                                      123455


Q ss_pred             HHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHhhccC----CcchHHHHHH
Q 013262          103 DAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYT----NIDQGLYAVL  178 (447)
Q Consensus       103 ~~i~~l~~~~~~~~~~~~~l~~~~~~k~~~~~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~----~~~~~~~a~~  178 (447)
                      +.++.+|+++ ...+.+..+++++++|+++|++|+|+|+|||+|+|++++||++|+++|.+++...    ..+|+.|+++
T Consensus       231 ~~i~~ll~~~-~~~~~~~~l~~~~~~K~~~t~lt~~~G~~GG~f~Psl~iGa~~G~~~~~~~~~~~~~~~~~~~~~~al~  309 (355)
T PF00654_consen  231 ELIQSLLSGS-PPWFSLGSLLLLFLLKFLATALTLGSGAPGGIFFPSLFIGAALGRLFGALLGSFFPGISSVDPGVYALV  309 (355)
T ss_dssp             THHHHHCTT-----S-HHHHHHHHHHHHHHHHHHHHTT-BSBSHHHHHHHHHHHHHHHHHHHHHH-GGG-T-SHHHHHHH
T ss_pred             HHHHHHHcCC-cchhhHHHHHHHHHHHHHHHHHhcCccCCCCEEccHHHHHHHHHHHHHHHHHhhCCCcCCCchHHHHHH
Confidence            6688888643 2358899999999999999999999999999999999999999999999998752    2369999999


Q ss_pred             HHHHHHHhhhchhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhh
Q 013262          179 GAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDS  224 (447)
Q Consensus       179 G~aa~~~g~~~~p~s~~vi~~E~t~~~~~~~p~~ia~~va~~v~~~  224 (447)
                      ||+|+++|++|+|++++++++|+||++++++|+|+++++|+.++++
T Consensus       310 G~~a~~~a~~~~Plt~~vl~~Eltg~~~~~~p~lia~~~a~~v~~~  355 (355)
T PF00654_consen  310 GMAAFLAAVTRAPLTAIVLVLELTGDFQLLLPLLIAVAVAYLVARW  355 (355)
T ss_dssp             HTTHHHHHHCS-HHHHHHHHHHHH--GGGHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCC
Confidence            9999999999999999999999999999999999999999999874

; InterPro: IPR001807 Chloride channels (CLCs) constitute an evolutionarily well-conserved family of voltage-gated channels that are structurally unrelated to the other known voltage-gated channels. They are found in organisms ranging from bacteria to yeasts and plants, and also to animals. Their functions in higher animals likely include the regulation of cell volume, control of electrical excitability and trans-epithelial transport []. The first member of the family (CLC-0) was expression-cloned from the electric organ of Torpedo marmorata [], and subsequently nine CLC-like proteins have been cloned from mammals. They are thought to function as multimers of two or more identical or homologous subunits, and they have varying tissue distributions and functional properties. To date, CLC-0, CLC-1, CLC-2, CLC-4 and CLC-5 have been demonstrated to form functional Cl- channels; whether the remaining isoforms do so is either contested or unproven. One possible explanation for the difficulty in expressing activatable Cl- channels is that some of the isoforms may function as Cl- channels of intracellular compartments, rather than of the plasma membrane. However, they are all thought to have a similar transmembrane (TM) topology, initial hydropathy analysis suggesting 13 hydrophobic stretches long enough to form putative TM domains []. Recently, the postulated TM topology has been revised, and it now seems likely that the CLCs have 10 (or possibly 12) TM domains, with both N- and C-termini residing in the cytoplasm []. A number of human disease-causing mutations have been identified in the genes encoding CLCs. Mutations in CLCN1, the gene encoding CLC-1, the major skeletal muscle Cl- channel, lead to both recessively and dominantly-inherited forms of muscle stiffness or myotonia []. Similarly, mutations in CLCN5, which encodes CLC-5, a renal Cl- channel, lead to several forms of inherited kidney stone disease []. These mutations have been demonstrated to reduce or abolish CLC function.; GO: 0005247 voltage-gated chloride channel activity, 0006821 chloride transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2FEC_B 1KPK_F 2EZ0_A 1OTS_A 1OTT_B 2H2S_A 2FED_B 2HTL_A 2HTK_B 3NMO_A ....

>PRK05277 chloride channel protein; Provisional

Probab=99.91  E-value=4.2e-24  Score=221.32  Aligned_cols=135  Identities=26%  Similarity=0.474  Sum_probs=123.0

Q ss_pred             CChHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHhhccC---CcchHHH
Q 013262           99 TTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYT---NIDQGLY  175 (447)
Q Consensus        99 ~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~k~~~~~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~---~~~~~~~  175 (447)
                      +++++.++++++.    ++++..++.++++|++++++|+|+|.|||+|+|++++||++|+++|.+++...   ..+|+.|
T Consensus       279 g~G~~~i~~~~~~----~~~~~~l~~~~~~K~i~t~ls~gsG~~GG~f~Psl~iGa~~G~~~g~~~~~~~p~~~~~~~~~  354 (438)
T PRK05277        279 GGGFNLIPIALAG----NFSIGMLLFIFVARFITTLLCFGSGAPGGIFAPMLALGTLLGLAFGMVAAALFPQYHIEPGTF  354 (438)
T ss_pred             CChHHHHHHHHcC----CchHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHH
Confidence            3567778888764    46777888889999999999999999999999999999999999999987632   4689999


Q ss_pred             HHHHHHHHHHhhhchhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhhc-CCchHHHHHHhh
Q 013262          176 AVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSF-NPSIYEIILELK  237 (447)
Q Consensus       176 a~~G~aa~~~g~~~~p~s~~vi~~E~t~~~~~~~p~~ia~~va~~v~~~l-~~sIYd~~l~~k  237 (447)
                      +++||+|+++|++|+|++++++++|+||++++++|+|+++++|+++++.+ ++++||.++++.
T Consensus       355 a~~G~aA~la~~~~aPlt~~v~~~Eltg~~~~l~p~lia~~~A~~v~~~~~~~~iy~~~l~~~  417 (438)
T PRK05277        355 AIAGMGALFAATVRAPLTGIVLVLEMTDNYQLILPLIITCLGATLLAQFLGGKPIYSALLERT  417 (438)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999 899999999875

>COG0038 EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]

Probab=99.90  E-value=3.6e-23  Score=213.64  Aligned_cols=141  Identities=28%  Similarity=0.510  Sum_probs=124.6

Q ss_pred             CChHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHhhccC---CcchHHH
Q 013262           99 TTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYT---NIDQGLY  175 (447)
Q Consensus        99 ~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~k~~~~~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~---~~~~~~~  175 (447)
                      ++|+..++..++.+    +.+..++.+++.|+++|++|+|+|.|||+|.|++++||++|.++|.+++...   ...++.|
T Consensus       293 g~G~~~~~~~~~~~----~~~~~l~~l~~~K~l~t~~s~gSG~~GGif~Psl~iGa~lG~~~g~~~~~~~~~~~~~~~~~  368 (443)
T COG0038         293 GNGYGLIQLALAGE----GGLLVLLLLFLLKLLATLLSYGSGAPGGIFAPSLFIGAALGLAFGALLGLLFPPSILEPGLF  368 (443)
T ss_pred             CCCccHHHHHHccC----ccHHHHHHHHHHHHHHHHHHHhcCCCcceehHHHHHHHHHHHHHHHHHHhhcCccccchHHH
Confidence            45666777777643    3344378889999999999999999999999999999999999999988742   3457799


Q ss_pred             HHHHHHHHHHhhhchhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhhc-CCchHHHHHHhhCCCCCC
Q 013262          176 AVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSF-NPSIYEIILELKGLPFLD  243 (447)
Q Consensus       176 a~~G~aa~~~g~~~~p~s~~vi~~E~t~~~~~~~p~~ia~~va~~v~~~l-~~sIYd~~l~~kg~p~l~  243 (447)
                      +++||+|+++|++|+|++++++++||||+++.++|+|+++++|+.+++.. ++++|+..+++++.+..+
T Consensus       369 al~Gm~a~la~~~~aPlta~vlv~EmTg~~~~~l~ll~a~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (443)
T COG0038         369 ALLGMAAFLAATTRAPLTAIVLVLEMTGNYQLLLPLLIACLIAYLVSRLLGGRPIYTQLLARRGAPILR  437 (443)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHhCCCcHHHHHHHhcCchhhh
Confidence            99999999999999999999999999999999999999999999999998 999999999999887443

>cd01034 EriC_like ClC chloride channel family

Probab=99.88  E-value=1.7e-22  Score=206.23  Aligned_cols=124  Identities=27%  Similarity=0.447  Sum_probs=110.8

Q ss_pred             CChHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHhhccCCcchHHHHHH
Q 013262           99 TTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYTNIDQGLYAVL  178 (447)
Q Consensus        99 ~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~k~~~~~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~~~~~~a~~  178 (447)
                      ++|++.++.+++.+.  ..    .+.++++|+++|++|+|+|.|||+|+|++++||++|++++.+++.   .+|..|+++
T Consensus       266 G~G~~~i~~~~~~~~--~~----~~~~~l~K~i~t~lt~gsG~~gG~f~P~l~iGa~~G~~~~~~~~~---~~~~~~a~~  336 (390)
T cd01034         266 GTGYLQARAALEGGG--GL----PLWFGLLKFLATLLSYWSGIPGGLFAPSLAVGAGLGSLLAALLGS---VSQGALVLL  336 (390)
T ss_pred             cCcHHHHHHHHhCCC--cc----cHHHHHHHHHHHHHHHHcCCCcceechHHHHHHHHHHHHHHHhcC---CCchHHHHH
Confidence            456777888876431  22    234577999999999999999999999999999999999998863   589999999


Q ss_pred             HHHHHHHhhhchhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhhc-CCchHH
Q 013262          179 GAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSF-NPSIYE  231 (447)
Q Consensus       179 G~aa~~~g~~~~p~s~~vi~~E~t~~~~~~~p~~ia~~va~~v~~~l-~~sIYd  231 (447)
                      ||+|++++++|+|++++++++|+||++++++|+|+++++|+++++.+ ++++||
T Consensus       337 G~aA~laa~~~aPlt~~vl~~Elt~~~~~l~p~lia~~~A~~v~~~~~~~~iY~  390 (390)
T cd01034         337 GMAAFLAGVTQAPLTAFVIVMEMTGDQQMLLPLLAAALLASGVSRLVCPEPLYH  390 (390)
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence            99999999999999999999999999999999999999999999998 899986

These protein sequences, closely related to the ClC Eric family, are putative halogen ion (Cl-, Br- and I-) transport proteins found in eubacteria. They belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.

>cd01033 ClC_like Putative ClC chloride channel

Probab=99.88  E-value=1.1e-21  Score=200.07  Aligned_cols=125  Identities=24%  Similarity=0.414  Sum_probs=113.7

Q ss_pred             hcCChHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHhhcc-CCcchHHH
Q 013262           97 LLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSY-TNIDQGLY  175 (447)
Q Consensus        97 ~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~k~~~~~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~-~~~~~~~~  175 (447)
                      .++++++.++.+++.    .++...++.++++|+++|++|+|+|.|||+|+|++++||++|+++|.+++.. +..++..|
T Consensus       260 ~~G~G~~~i~~~~~~----~~~~~~ll~~~~~K~~~t~lt~gsG~~GG~f~P~l~iGa~~G~~~g~~~~~~~p~~~~~~~  335 (388)
T cd01033         260 ILGNGRALAQLAFST----TLTLSLLLILLVLKIVATLLALRAGAYGGLLTPSLALGALLGALLGIVWNALLPPLSIAAF  335 (388)
T ss_pred             HhCCcHHHHHHHHcC----CchHHHHHHHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHHHHHHHHHhCCcccHHHH
Confidence            356788899999875    3567778888999999999999999999999999999999999999998763 35678899


Q ss_pred             HHHHHHHHHHhhhchhHHHHHHHHHhhc-CCchHHHHHHHHHHHHHHHhhc
Q 013262          176 AVLGAASLMAGSMRMTVSLCVIFLELTN-NLLLLPITMIVLLIAKTVGDSF  225 (447)
Q Consensus       176 a~~G~aa~~~g~~~~p~s~~vi~~E~t~-~~~~~~p~~ia~~va~~v~~~l  225 (447)
                      +++||||+++|++|+|++++++++|+|| +++.++|+|+++++|+.+++.+
T Consensus       336 a~~GmaA~laa~~~aPlt~ivl~~Eltg~~~~~l~Pl~ia~~~a~~vs~~~  386 (388)
T cd01033         336 ALIGAAAFLAATQKAPLTALILVLEFTRQNPLFLIPLMLAVAGAVAVSRFI  386 (388)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999 9999999999999999999866

Clc proteins are putative halogen ion (Cl-, Br- and I-) transporters found in eubacteria. They belong to the ClC superfamily of halogen ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.

>cd00400 Voltage_gated_ClC CLC voltage-gated chloride channel

Probab=99.84  E-value=2.9e-20  Score=189.71  Aligned_cols=142  Identities=24%  Similarity=0.411  Sum_probs=118.9

Q ss_pred             cchHHHHHHHHHHHHHhHcchhhhhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCcchhHHhhcCChHHHHHHHhcCCC
Q 013262           34 MHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNT  113 (447)
Q Consensus        34 ~~~~~e~~~v~~~t~~~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~~~~~~c~~~~y~~l~~l~~~~~~~~i~~l~~~~~  113 (447)
                      +++++.+++.+++++++.++.|...                                        +++++.++..++   
T Consensus       239 ~~~~~~~~i~gll~~~~~~~~p~~~----------------------------------------g~G~~~~~~~~~---  275 (383)
T cd00400         239 IPPWLRPALGGLLLGLLGLFLPQVL----------------------------------------GSGYGAILLALA---  275 (383)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHH----------------------------------------cCcHHHHHHHHc---
Confidence            4455666777777777777666543                                        233444566654   


Q ss_pred             CCCcchHHHHHHHHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHhhcc---CCcchHHHHHHHHHHHHHhhhch
Q 013262          114 PTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSY---TNIDQGLYAVLGAASLMAGSMRM  190 (447)
Q Consensus       114 ~~~~~~~~l~~~~~~k~~~~~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~---~~~~~~~~a~~G~aa~~~g~~~~  190 (447)
                       +++++..++.+++.|++++++|+|+|.|||+|.|++++||++|+++|.+++..   ...+|..|+++||+|++++++|+
T Consensus       276 -~~~~~~~l~~~~~~K~~~t~l~~~sG~~GG~~~P~l~iGa~~G~~~~~~~~~~~~~~~~~~~~~~~~G~aa~la~~~~a  354 (383)
T cd00400         276 -GELSLLLLLLLLLLKLLATALTLGSGFPGGVFAPSLFIGAALGAAFGLLLPALFPGLVASPGAYALVGMAALLAAVLRA  354 (383)
T ss_pred             -CChhHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHhCCcccCChHHHHHHHHHHHHHHHhCc
Confidence             34667788889999999999999999999999999999999999999999863   34689999999999999999999


Q ss_pred             hHHHHHHHHHhhcCCchHHHHHHHHHHHH
Q 013262          191 TVSLCVIFLELTNNLLLLPITMIVLLIAK  219 (447)
Q Consensus       191 p~s~~vi~~E~t~~~~~~~p~~ia~~va~  219 (447)
                      |++++++++|+||++++++|+|+++++||
T Consensus       355 Plt~~vl~~Eltg~~~~l~p~~ia~~ia~  383 (383)
T cd00400         355 PLTAILLVLELTGDYSLLLPLMLAVVIAY  383 (383)
T ss_pred             hHHHHHHHHHHhCChhhHHHHHHHHHhcC
Confidence            99999999999999999999999998875

The ClC chloride channels catalyse the selective flow of Cl- ions across cell membranes, thereby regulating electrical excitation in skeletal muscle and the flow of salt and water across epithelial barriers. This domain is found in the halogen ions (Cl-, Br- and I-) transport proteins of the ClC family. The ClC channels are found in all three kingdoms of life and perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, transepithelial transport in animals, and the extreme acid resistance response in eubacteria. They lack any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. Unlike cation-selective ion channels, which form oligomers containing a single pore along the axis of symmetry, the ClC channels form two-pore

>cd03682 ClC_sycA_like ClC sycA-like chloride channel proteins

Probab=99.83  E-value=2.7e-20  Score=189.34  Aligned_cols=119  Identities=23%  Similarity=0.382  Sum_probs=103.1

Q ss_pred             cCChHHHHHH-HhcCCCCCCcchHHHHHHHHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHhhccCCcchHHHH
Q 013262           98 LTTNDDAVRN-IFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYTNIDQGLYA  176 (447)
Q Consensus        98 ~~~~~~~i~~-l~~~~~~~~~~~~~l~~~~~~k~~~~~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~~~~~~a  176 (447)
                      .+.+++.++. +++.    +++    ...++.|+++|++|+|+|.|||+|+|++++||++|+++|++++    .+++.|+
T Consensus       259 ~G~g~~~i~~~~~~~----~~~----~~~~l~K~~~t~~s~g~G~~GG~f~P~l~iGa~~G~~~~~~~~----~~~~~~~  326 (378)
T cd03682         259 LGLGTPLIEDSFFGG----TVY----PYDWLLKLIFTVITLGAGFKGGEVTPLFFIGATLGNALAPILG----LPVSLLA  326 (378)
T ss_pred             ccCCHHHHHHHHhcC----Cch----HHHHHHHHHHHHHHHhcCCCCceechHHHHHHHHHHHHHHHHC----CCHHHHH
Confidence            3456677776 5543    222    2345799999999999999999999999999999999999986    5788999


Q ss_pred             HHHHHHHHHhhhchhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhhcCCchHH
Q 013262          177 VLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYE  231 (447)
Q Consensus       177 ~~G~aa~~~g~~~~p~s~~vi~~E~t~~~~~~~p~~ia~~va~~v~~~l~~sIYd  231 (447)
                      ++||+|++++++|+|++++++++|+|| ++.++|+|+++++|+.+++  +++||+
T Consensus       327 ~~Gmaa~laa~~raPlt~ivl~~Eltg-~~~~~p~~ia~~ia~~~~~--~~~iy~  378 (378)
T cd03682         327 ALGFVAVFAGATNTPLACIIMGIELFG-AENAPYFFIACLVAYLFSG--HTGIYG  378 (378)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHhC-ccchHHHHHHHHHHHHHhC--CCCCCC
Confidence            999999999999999999999999999 6778899999999999987  788884

This ClC family presents in bacteria, where it facilitates acid resistance in acidic soil. Mutation of this gene (sycA) in Rhizobium tropici CIAT899 causes serious deficiencies in nodule development, nodulation competitiveness, and N2 fixation on Phaseolus vulgaris plants, due to its reduced ability for acid resistance. This family is part of the ClC chloride channel superfamiy. These proteins catalyse the selective flow of Cl- ions across cell membranes and Cl-/H+ exchange transport. These proteins share two characteristics that are apparently inherent to the entire ClC chloride channel superfamily: a unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge.

>PRK03655 putative ion channel protein; Provisional

Probab=99.71  E-value=6e-17  Score=165.86  Aligned_cols=115  Identities=12%  Similarity=0.185  Sum_probs=102.5

Q ss_pred             cCChHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHhhccCCcchHHHHH
Q 013262           98 LTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYTNIDQGLYAV  177 (447)
Q Consensus        98 ~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~k~~~~~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~~~~~~a~  177 (447)
                      +++|++.++.+.+.   +++++..+++++++|+++|++|+|+|.|||+|+|+|++||++|..++.+++   ..++...++
T Consensus       280 ~g~Gy~~i~~~~~~---~~~~~~~ll~l~l~K~lat~ls~~sG~~GGiF~PsL~iGA~~G~~~~~l~p---~~~~~~~v~  353 (414)
T PRK03655        280 LFKGLDEMQQMAAN---QAFSASDYFLLAVVKLAALVVAAASGFRGGRIFPAVFVGVALGLMLHAHVP---AVPAAITVS  353 (414)
T ss_pred             ccCCHHHHHHHHhc---CCccHHHHHHHHHHHHHHHHHHHccCCCCceehHHHHHHHHHHHHHHHhcc---CCChHHHHH
Confidence            66788899888754   357888888899999999999999999999999999999999999999875   367888999


Q ss_pred             HHHHHHHHhhhc----hhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHh
Q 013262          178 LGAASLMAGSMR----MTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGD  223 (447)
Q Consensus       178 ~G~aa~~~g~~~----~p~s~~vi~~E~t~~~~~~~p~~ia~~va~~v~~  223 (447)
                      +||+|+++|++|    +|++++++++|||     ++|+|++++++.|+.-
T Consensus       354 ~~m~a~la~vtr~p~~sp~ta~viv~em~-----~~~l~~~~~~~~~~~~  398 (414)
T PRK03655        354 CAILGIVLVVTRDGWLSLFMAAVVVPDTT-----LLPLLCIVMLPAWLLL  398 (414)
T ss_pred             HHHHHHHHHHhccchhhHHHHHHHHhcch-----HHHHHHHHHHHHHHHH
Confidence            999999999999    6999999999999     8899999888877653

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=99.68  E-value=3.1e-16  Score=144.87  Aligned_cols=123  Identities=20%  Similarity=0.281  Sum_probs=109.7

Q ss_pred             cccccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhh
Q 013262          250 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ  329 (447)
Q Consensus       250 l~~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~  329 (447)
                      ..+.+|+++|++  ++++++++++++++..++.++++++.||+|+            ++++|+++.+|+..++.+..   
T Consensus       169 iPk~~V~~~~s~--~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~------------dk~vGiit~~dI~~aia~g~---  231 (294)
T COG2524         169 IPKEKVKNLMSK--KLITVRPDDTLREAAKLFYEKGIRGAPVVDD------------DKIVGIITLSDIAKAIANGN---  231 (294)
T ss_pred             cCcchhhhhccC--CceEecCCccHHHHHHHHHHcCccCCceecC------------CceEEEEEHHHHHHHHHcCC---
Confidence            346789999999  9999999999999999999999999999998            58999999999988775531   


Q ss_pred             hcccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCc
Q 013262          330 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKY  409 (447)
Q Consensus       330 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~  409 (447)
                                                           ....++++|.++++++++|+.+.+|+++|.++++.+|.|+|. 
T Consensus       232 -------------------------------------~~~kV~~~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds-  273 (294)
T COG2524         232 -------------------------------------LDAKVSDYMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDS-  273 (294)
T ss_pred             -------------------------------------ccccHHHHhccCCceEcCchhHHHHHHHHHhcCcceEEEEcc-
Confidence                                                 123477889999999999999999999999999999999997 


Q ss_pred             ccCCCCcEEEEEeHHHHHHHHH
Q 013262          410 EAAGVSPVVGILTRQDLRAFNI  431 (447)
Q Consensus       410 ~~~g~~~lvGIITr~DLl~~~~  431 (447)
                          +|+.+|+|||.|+++...
T Consensus       274 ----~gkpvGiITrTDIL~~ia  291 (294)
T COG2524         274 ----NGKPVGIITRTDILTRIA  291 (294)
T ss_pred             ----CCcEEEEEehHHHHHHhh
Confidence                678999999999998653

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=99.66  E-value=7.1e-16  Score=153.78  Aligned_cols=147  Identities=14%  Similarity=0.107  Sum_probs=124.3

Q ss_pred             CCchHHHHHHhhCCCC---CCCCCCcccc---cccccccccCCCC--eeEecCCCCHHHHHHHHhcCCCCeEEEecCCCC
Q 013262          226 NPSIYEIILELKGLPF---LDAHPEPWMR---TLTVGELIDAKPP--VITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVV  297 (447)
Q Consensus       226 ~~sIYd~~l~~kg~p~---l~~~~~~~l~---~l~v~diM~~~~~--vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~  297 (447)
                      .+++|...+.++|...   ...++...+.   ..+|+|+|.+  +  ++++++++++.++.+.|.+++...+||+|++  
T Consensus       164 ~dsL~~~~l~~~g~~~~~~~~~~~~~~l~~~~~~~V~~im~~--~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~--  239 (321)
T PRK11543        164 GDALAMAVMQARGFNEEDFARSHPAGALGARLLNKVHHLMRR--DDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQ--  239 (321)
T ss_pred             HHHHHHHHHHHcCCCHHHhccCCCCCHHHHHHHhHHHHHhcc--CCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCC--
Confidence            5689999999988866   6666777788   8999999999  6  8999999999999999988888999999987  


Q ss_pred             CCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccC
Q 013262          298 PPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNT  377 (447)
Q Consensus       298 ~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~  377 (447)
                               ++++|+|+..|+.+.+....   .                                    ....+.++|.+
T Consensus       240 ---------g~~iG~vt~~dl~~~~~~~~---~------------------------------------~~~~v~~im~~  271 (321)
T PRK11543        240 ---------QQVQGVFTDGDLRRWLVGGG---A------------------------------------LTTPVNEAMTR  271 (321)
T ss_pred             ---------CcEEEEecHHHHHHHHhCCC---C------------------------------------cCCcHHHhcCC
Confidence                     89999999999976543210   0                                    01124567888


Q ss_pred             CCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHH
Q 013262          378 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAF  429 (447)
Q Consensus       378 ~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~  429 (447)
                      ++.++.+++++.+|++.|.+.+.+++||||+     +++++|+||++|++++
T Consensus       272 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-----~~~lvGvIt~~di~~~  318 (321)
T PRK11543        272 GGTTLQAQSRAIDAKEILMKRKITAAPVVDE-----NGKLTGAINLQDFYQA  318 (321)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-----CCeEEEEEEHHHHHhc
Confidence            8999999999999999999999999999987     4689999999999874

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=99.66  E-value=4e-15  Score=139.86  Aligned_cols=135  Identities=21%  Similarity=0.272  Sum_probs=112.0

Q ss_pred             ccccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhh
Q 013262          251 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQE  330 (447)
Q Consensus       251 ~~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~  330 (447)
                      ..+++.|||++  +++++++++++.++.++|.+++...+||+|++           .+++|+|+++|+..-.....+.  
T Consensus       243 ~~LtcadIMSr--dVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~-----------~rl~GiVt~~dl~~~a~~~p~q--  307 (382)
T COG3448         243 GELTCADIMSR--DVVTVSTDTSIDHARKLLQEHRIKALPVLDEH-----------RRLVGIVTQRDLLKHARPSPFQ--  307 (382)
T ss_pred             ccccHHHhcCc--cceecCCcCChHHHHHHHHHcCcccccccccc-----------cceeeeeeHHHHhhccCcchHH--
Confidence            46788999999  99999999999999999999999999999998           8999999999996521110000  


Q ss_pred             cccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcc
Q 013262          331 KRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYE  410 (447)
Q Consensus       331 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~  410 (447)
                             .+.       ++                 ....++.+|++...++.+|++..+..-+|.+.|.+++||+|+  
T Consensus       308 -------rlr-------~~-----------------~~~~vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~--  354 (382)
T COG3448         308 -------RLR-------FL-----------------RPPTVKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLDA--  354 (382)
T ss_pred             -------Hhh-------cc-----------------CCCcccccccCcceeecCCCcHHHHHHHhhcCCcceeeEEcC--
Confidence                   000       11                 112477899999999999999999999999999999999998  


Q ss_pred             cCCCCcEEEEEeHHHHHHHHHhhhcC
Q 013262          411 AAGVSPVVGILTRQDLRAFNILTAFP  436 (447)
Q Consensus       411 ~~g~~~lvGIITr~DLl~~~~~~~~~  436 (447)
                         .|+++||||..|++.+..++...
T Consensus       355 ---~g~lvGIvsQtDliaal~r~~~~  377 (382)
T COG3448         355 ---AGKLVGIVSQTDLIAALYRNWSQ  377 (382)
T ss_pred             ---CCcEEEEeeHHHHHHHHHHHHHH
Confidence               67899999999999988876443

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=99.65  E-value=1.7e-15  Score=151.36  Aligned_cols=154  Identities=12%  Similarity=0.170  Sum_probs=124.0

Q ss_pred             HHhhc-CCchHHHHHHhhCCCC---CCCCCCccc---ccccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEec
Q 013262          221 VGDSF-NPSIYEIILELKGLPF---LDAHPEPWM---RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLD  293 (447)
Q Consensus       221 v~~~l-~~sIYd~~l~~kg~p~---l~~~~~~~l---~~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd  293 (447)
                      ++..+ .+++|...+.++|.-.   ...++...+   ..++|+|+|.+..+++++++++++.++.+.|.+++++.+||+|
T Consensus       163 ia~~~~~dsL~~~~l~~~g~~~~~~~~~~~~~~l~~~~~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd  242 (326)
T PRK10892        163 TATLVMGDALAVALLKARGFTAEDFALSHPGGALGRKLLLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICD  242 (326)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCHHHHHhcCCCchhcccccCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEc
Confidence            44444 6789999999999876   555566566   7899999998522678999999999999999888887778888


Q ss_pred             CCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccc
Q 013262          294 EGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHP  373 (447)
Q Consensus       294 ~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~  373 (447)
                      ++           |+++|+|+.+|+.+++....    .                                  ....++++
T Consensus       243 ~~-----------g~lvGivt~~Dl~~~~~~~~----~----------------------------------~~~~~v~~  273 (326)
T PRK10892        243 DN-----------MKIEGIFTDGDLRRVFDMGI----D----------------------------------LRQASIAD  273 (326)
T ss_pred             CC-----------CcEEEEEecHHHHHHHhcCC----C----------------------------------cccCCHHH
Confidence            76           89999999999976443210    0                                  00124567


Q ss_pred             cccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHH
Q 013262          374 LTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAF  429 (447)
Q Consensus       374 im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~  429 (447)
                      +|.+++.++.+++++.+|+++|.+.+.+++||+|+      ++++|+||++|++++
T Consensus       274 im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~------~~lvGiit~~dil~~  323 (326)
T PRK10892        274 VMTPGGIRVRPGILAVDALNLMQSRHITSVLVADG------DHLLGVLHMHDLLRA  323 (326)
T ss_pred             hcCCCCEEECCCCCHHHHHHHHHHCCCcEEEEeeC------CEEEEEEEhHHhHhc
Confidence            88889999999999999999999999999999974      579999999999975

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=99.63  E-value=4.4e-16  Score=149.48  Aligned_cols=151  Identities=20%  Similarity=0.259  Sum_probs=131.6

Q ss_pred             HHHHHHHHHHHHHHHhhcCCchHHHHHHhhCCCCCCCCCCcccccccccccccCCCCeeEecCCCCHHHHHHHHhcCCCC
Q 013262          208 LPITMIVLLIAKTVGDSFNPSIYEIILELKGLPFLDAHPEPWMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHN  287 (447)
Q Consensus       208 ~~p~~ia~~va~~v~~~l~~sIYd~~l~~kg~p~l~~~~~~~l~~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~  287 (447)
                      -+|++-...-.+.|+..+++.+|+..++..              -++|+|+|.|..+..++.+++++++..++.++++|+
T Consensus       157 ~lPvlstsYDTFTVAtmIN~Al~n~lIKkd--------------I~~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~s  222 (432)
T COG4109         157 GLPVLSTSYDTFTVATMINKALSNQLIKKD--------------IITVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHS  222 (432)
T ss_pred             CCceEEecccceeHHHHHHHHHHHhhhhhh--------------eeeHHHhccccccceeccccccHHHHHHHHHHcCCC
Confidence            478888888888899888999999888742              368999999766888999999999999999999999


Q ss_pred             eEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcchHHHHhhhcccccccccchhhhhh
Q 013262          288 GFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEM  367 (447)
Q Consensus       288 ~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~  367 (447)
                      .|||+|+.           .+++|+++.+|+....                                            .
T Consensus       223 RfPVvn~~-----------~kvvGvVt~rDv~~~~--------------------------------------------~  247 (432)
T COG4109         223 RFPVVNRS-----------MKVVGVVTMRDVLDKK--------------------------------------------P  247 (432)
T ss_pred             ccceeccc-----------ceEEEEEEehhhhcCC--------------------------------------------C
Confidence            99999997           8999999999985310                                            1


Q ss_pred             ccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHHHh
Q 013262          368 YIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL  432 (447)
Q Consensus       368 ~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~~~  432 (447)
                      ...+..+|+++|++|.+.+++..+.+.|.-.|++.+||+|+     +++++|+|||+|+++.+..
T Consensus       248 ~t~ieKVMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~-----n~~llGiitR~dvlk~lq~  307 (432)
T COG4109         248 STTIEKVMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDS-----NNTLLGIITRQDVLKSLQM  307 (432)
T ss_pred             CccHHHHhccCCeeecccchHHHHHHHHHhccceeeeEEcC-----CceEEEEEEHHHHHHHHHH
Confidence            13456689999999999999999999999999999999998     6789999999999998764

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.52  E-value=1.9e-13  Score=115.71  Aligned_cols=118  Identities=15%  Similarity=0.180  Sum_probs=92.5

Q ss_pred             CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262          264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF  343 (447)
Q Consensus       264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~  343 (447)
                      ++.++++++++.++.+.|.+++.+.+||++++           ++++|+++.+|+..++..++....           ..
T Consensus         2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~-----------~~~~Giv~~~dl~~~~~~~~~~~~-----------~~   59 (120)
T cd04641           2 NIATARPDTPLIDVLDMLVERRVSALPIVDEN-----------GKVVDVYSRFDVINLAKEGAYNNL-----------DL   59 (120)
T ss_pred             CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCC-----------CeEEEEEeHHHHHHHHhcCccccc-----------cC
Confidence            67889999999999999999999999999876           899999999999876543221000           00


Q ss_pred             hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262          344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR  423 (447)
Q Consensus       344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr  423 (447)
                      +..+.                    +..++.|..++.++++++++.+++++|.+.+.+++||+|+     +++++|+||+
T Consensus        60 ~~~~~--------------------~~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-----~~~~~Givt~  114 (120)
T cd04641          60 TVGEA--------------------LERRSQDFEGVRTCSPDDCLRTIFDLIVKARVHRLVVVDE-----NKRVEGIISL  114 (120)
T ss_pred             CHHHH--------------------HhhcccCCCCCeEEcCCCcHHHHHHHHHhcCccEEEEECC-----CCCEEEEEEH
Confidence            00000                    1123345567789999999999999999999999999987     4679999999


Q ss_pred             HHHHH
Q 013262          424 QDLRA  428 (447)
Q Consensus       424 ~DLl~  428 (447)
                      +|+++
T Consensus       115 ~di~~  119 (120)
T cd04641         115 SDILQ  119 (120)
T ss_pred             HHhhc
Confidence            99976

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=99.50  E-value=2.6e-13  Score=113.34  Aligned_cols=109  Identities=14%  Similarity=0.195  Sum_probs=90.2

Q ss_pred             CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262          264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF  343 (447)
Q Consensus       264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~  343 (447)
                      ++.++++++++.++.+.|.+++++.+||+|++           ++++|+|+..|+.+.....+                 
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~-----------~~~~G~v~~~dl~~~~~~~~-----------------   53 (111)
T cd04603           2 QTVSVNCENPLREAIKMINELGARAVVVVDEE-----------NKVLGQVTLSDLLEIGPNDY-----------------   53 (111)
T ss_pred             ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCC-----------CCEEEEEEHHHHHhhccccc-----------------
Confidence            45788999999999999998888999999986           89999999999965211000                 


Q ss_pred             hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262          344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR  423 (447)
Q Consensus       344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr  423 (447)
                                             ....+.++|...+.++.+++++.+|+++|.+.+.+++||+|+     +|+++|+||+
T Consensus        54 -----------------------~~~~v~~~~~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~-----~~~~~Giit~  105 (111)
T cd04603          54 -----------------------ETLKVCEVYIVPVPIVYCDSKVTDLLRIFRETEPPVVAVVDK-----EGKLVGTIYE  105 (111)
T ss_pred             -----------------------cccChhheeecCCcEECCCCcHHHHHHHHHHcCCCeEEEEcC-----CCeEEEEEEh
Confidence                                   001244567778889999999999999999999999999986     5689999999


Q ss_pred             HHHHH
Q 013262          424 QDLRA  428 (447)
Q Consensus       424 ~DLl~  428 (447)
                      +|+++
T Consensus       106 ~di~~  110 (111)
T cd04603         106 RELLR  110 (111)
T ss_pred             HHhhc
Confidence            99975

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.50  E-value=3.2e-13  Score=113.30  Aligned_cols=112  Identities=13%  Similarity=0.147  Sum_probs=92.0

Q ss_pred             CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262          264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF  343 (447)
Q Consensus       264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~  343 (447)
                      .+.++++++++.++.+.|.+.+++.+||+|++           ++++|+|+.+|+.+.+..... .              
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~-----------g~~~G~vt~~dl~~~~~~~~~-~--------------   55 (114)
T cd04619           2 RLAKIDVNATLQRAAKILGEPGIDLVVVCDPH-----------GKLAGVLTKTDVVRQMGRCGG-P--------------   55 (114)
T ss_pred             ceEEECCCCcHHHHHHHHHhcCCCEEEEECCC-----------CCEEEEEehHHHHHHHhhcCC-C--------------
Confidence            35678999999999999999999999999987           899999999999765432000 0              


Q ss_pred             hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262          344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR  423 (447)
Q Consensus       344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr  423 (447)
                                            .....+.++|.+++.++.+++++.++++.|.+.+.+++||+|+     +++++|+||+
T Consensus        56 ----------------------~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-----~~~~~Gvi~~  108 (114)
T cd04619          56 ----------------------GCTAPVENVMTRAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDE-----NARPLGVLNA  108 (114)
T ss_pred             ----------------------cccCCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeEEEECC-----CCcEEEEEEh
Confidence                                  0012345567788899999999999999999999999999987     4689999999


Q ss_pred             HHHHH
Q 013262          424 QDLRA  428 (447)
Q Consensus       424 ~DLl~  428 (447)
                      +|+++
T Consensus       109 ~dl~~  113 (114)
T cd04619         109 RDALK  113 (114)
T ss_pred             Hhhcc
Confidence            99874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=99.49  E-value=2.9e-13  Score=116.57  Aligned_cols=122  Identities=24%  Similarity=0.366  Sum_probs=101.6

Q ss_pred             ccccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhh
Q 013262          251 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQE  330 (447)
Q Consensus       251 ~~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~  330 (447)
                      ..++++++|..  +++.+++++++.+++++|++.+++.+||+++            ++++|-|+.+++.+++.+..   +
T Consensus        63 ~~ita~~iM~s--pvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~------------~k~VGsItE~~iv~~~le~~---e  125 (187)
T COG3620          63 TRITAKTIMHS--PVVSVSPDDSISDVVNLMRDKGISQLPVIEE------------DKVVGSITENDIVRALLEGM---E  125 (187)
T ss_pred             ceEeHhhhccC--CeeEECchhhHHHHHHHHHHcCCccCceeeC------------CeeeeeecHHHHHHHHhccc---c
Confidence            46899999999  9999999999999999999999999999987            69999999999988764421   0


Q ss_pred             cccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcc
Q 013262          331 KRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYE  410 (447)
Q Consensus       331 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~  410 (447)
                             ..                           ....++++|....++|++++++..+.+++..+..  +.|++   
T Consensus       126 -------~i---------------------------~~~~vr~vM~e~fP~Vs~~~~l~vI~~LL~~~~A--VlV~e---  166 (187)
T COG3620         126 -------SI---------------------------RSLRVREVMGEPFPTVSPDESLNVISQLLEEHPA--VLVVE---  166 (187)
T ss_pred             -------ch---------------------------hhhhHHHHhcCCCCcCCCCCCHHHHHHHHhhCCe--EEEEe---
Confidence                   00                           1234677888888999999999999999887654  66775   


Q ss_pred             cCCCCcEEEEEeHHHHHHHHH
Q 013262          411 AAGVSPVVGILTRQDLRAFNI  431 (447)
Q Consensus       411 ~~g~~~lvGIITr~DLl~~~~  431 (447)
                         +|+++||||+.|+++...
T Consensus       167 ---~G~~vGIITk~DI~k~~~  184 (187)
T COG3620         167 ---NGKVVGIITKADIMKLLA  184 (187)
T ss_pred             ---CCceEEEEeHHHHHHHHh
Confidence               467999999999998654

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.49  E-value=1.7e-13  Score=142.41  Aligned_cols=124  Identities=20%  Similarity=0.222  Sum_probs=106.9

Q ss_pred             cccccccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhh
Q 013262          248 PWMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWF  327 (447)
Q Consensus       248 ~~l~~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~  327 (447)
                      ..++.++++++|.+  +++++++++++.++.+.|.+++++.+||+|++           ++++|+|+.+|+...      
T Consensus        84 ~~l~~VKv~~iMi~--~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~-----------gklvGIVT~rDL~~~------  144 (479)
T PRK07807         84 EVVAWVKSRDLVFD--TPVTLSPDDTVGDALALLPKRAHGAVVVVDEE-----------GRPVGVVTEADCAGV------  144 (479)
T ss_pred             HHHhhccccccccc--CCeEECCCCCHHHHHHHHHhcCCceEEEECCC-----------CeEEEEEeHHHHhcC------
Confidence            34678899999999  89999999999999999999999999999987           899999999998321      


Q ss_pred             hhhcccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEe
Q 013262          328 LQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVP  407 (447)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd  407 (447)
                       .                                     ...+++++|+++++++++++++.+|+++|.+.+.+++||+|
T Consensus       145 -~-------------------------------------~~~~V~diMt~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD  186 (479)
T PRK07807        145 -D-------------------------------------RFTQVRDVMSTDLVTLPAGTDPREAFDLLEAARVKLAPVVD  186 (479)
T ss_pred             -c-------------------------------------cCCCHHHhccCCceEECCCCcHHHHHHHHHhcCCCEEEEEc
Confidence             0                                     00135567888999999999999999999999999999998


Q ss_pred             CcccCCCCcEEEEEeHHHHHHHHHhh
Q 013262          408 KYEAAGVSPVVGILTRQDLRAFNILT  433 (447)
Q Consensus       408 ~~~~~g~~~lvGIITr~DLl~~~~~~  433 (447)
                      +     +++++|+||++||++.....
T Consensus       187 ~-----~g~lvGIIT~~DIl~~~~~~  207 (479)
T PRK07807        187 A-----DGRLVGVLTRTGALRATIYT  207 (479)
T ss_pred             C-----CCeEEEEEEHHHHHHHhhCC
Confidence            7     56899999999999876543

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.48  E-value=4.1e-13  Score=110.11  Aligned_cols=96  Identities=16%  Similarity=0.225  Sum_probs=83.3

Q ss_pred             CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262          264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF  343 (447)
Q Consensus       264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~  343 (447)
                      .++++++++++.++.+.|.+++++++||+|++          +++++|+|+.+|+.+.+                     
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~----------~~~~~Givt~~Dl~~~~---------------------   50 (98)
T cd04618           2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSR----------KQQFVGMLTITDFILIL---------------------   50 (98)
T ss_pred             eEEEECCCCcHHHHHHHHHHcCCceEEEEeCC----------CCEEEEEEEHHHHhhhe---------------------
Confidence            57789999999999999999999999999863          17899999999985411                     


Q ss_pred             hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262          344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR  423 (447)
Q Consensus       344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr  423 (447)
                                                       . +.++.+++++.+|+++|.+.+.+++||+|+   + +|+++|+||+
T Consensus        51 ---------------------------------~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~-~~~~~giit~   92 (98)
T cd04618          51 ---------------------------------R-LVSIHPERSLFDAALLLLKNKIHRLPVIDP---S-TGTGLYILTS   92 (98)
T ss_pred             ---------------------------------e-eEEeCCCCcHHHHHHHHHHCCCCEeeEEEC---C-CCCceEEeeh
Confidence                                             0 568999999999999999999999999987   2 2689999999


Q ss_pred             HHHHH
Q 013262          424 QDLRA  428 (447)
Q Consensus       424 ~DLl~  428 (447)
                      +|+++
T Consensus        93 ~d~~~   97 (98)
T cd04618          93 RRILK   97 (98)
T ss_pred             hhhhc
Confidence            99975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=99.48  E-value=3.7e-13  Score=132.01  Aligned_cols=133  Identities=18%  Similarity=0.326  Sum_probs=107.8

Q ss_pred             cccccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhh
Q 013262          250 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ  329 (447)
Q Consensus       250 l~~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~  329 (447)
                      +...+|+++|+++.++++++.+.+++++.+.+.+++++.|||++++          .++++|+|+.+|++..+....   
T Consensus        64 l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~----------~d~iiGiv~~kDll~~~~~~~---  130 (292)
T PRK15094         64 IADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISED----------KDHIEGILMAKDLLPFMRSDA---  130 (292)
T ss_pred             cCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCC----------CCcEEEEEEHHHHHhHhhccC---
Confidence            5677999999985569999999999999999999999999999864          168999999999975432100   


Q ss_pred             hcccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCc
Q 013262          330 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKY  409 (447)
Q Consensus       330 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~  409 (447)
                       .                                    ..++.++|. .+++|++++++.++++.|++.+.+.+||+|+ 
T Consensus       131 -~------------------------------------~~~l~~l~r-~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe-  171 (292)
T PRK15094        131 -E------------------------------------AFSMDKVLR-QAVVVPESKRVDRMLKEFRSQRYHMAIVIDE-  171 (292)
T ss_pred             -C------------------------------------cCCHHHHcC-CCcCcCCCCcHHHHHHHHHhcCCEEEEEEeC-
Confidence             0                                    012334553 5668999999999999999999999999997 


Q ss_pred             ccCCCCcEEEEEeHHHHHHHHHhhhcCcc
Q 013262          410 EAAGVSPVVGILTRQDLRAFNILTAFPHL  438 (447)
Q Consensus       410 ~~~g~~~lvGIITr~DLl~~~~~~~~~~~  438 (447)
                          .|.++|+||++|+++....+...+.
T Consensus       172 ----~G~viGiVTleDIle~ivGei~de~  196 (292)
T PRK15094        172 ----FGGVSGLVTIEDILELIVGEIEDEY  196 (292)
T ss_pred             ----CCCEEEEeEHHHHHHHHhCCCcccc
Confidence                4569999999999999887655443

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=99.47  E-value=5.1e-13  Score=137.11  Aligned_cols=130  Identities=18%  Similarity=0.236  Sum_probs=108.7

Q ss_pred             cccccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhh
Q 013262          250 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ  329 (447)
Q Consensus       250 l~~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~  329 (447)
                      +++.+|+|+|+++.++++++.+++++++.+.+.+++|+.+||++++          .++++|+|+.+|++..+...    
T Consensus       188 l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~----------~d~ivGiv~~kDll~~~~~~----  253 (408)
T TIGR03520       188 FGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKET----------IDNITGVLYIKDLLPHLNKK----  253 (408)
T ss_pred             cCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCC----------CCceEEEEEHHHHHhHhccC----
Confidence            5688999999987789999999999999999999999999999864          16899999999997532110    


Q ss_pred             hcccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCc
Q 013262          330 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKY  409 (447)
Q Consensus       330 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~  409 (447)
                                                            ..+++++| ++|.+|++++++.++++.|++.+.+..+|+|+ 
T Consensus       254 --------------------------------------~~~l~~~~-~~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE-  293 (408)
T TIGR03520       254 --------------------------------------NFDWQSLL-REPYFVPENKKLDDLLRDFQEKKNHLAIVVDE-  293 (408)
T ss_pred             --------------------------------------CCCHHHHc-CCCeEeCCCCcHHHHHHHHHhcCceEEEEEcC-
Confidence                                                  01234455 46889999999999999999999999999998 


Q ss_pred             ccCCCCcEEEEEeHHHHHHHHHhhhcCc
Q 013262          410 EAAGVSPVVGILTRQDLRAFNILTAFPH  437 (447)
Q Consensus       410 ~~~g~~~lvGIITr~DLl~~~~~~~~~~  437 (447)
                          .|.++|+||.+|++++...+...+
T Consensus       294 ----~G~~~GiVT~eDileeivgei~de  317 (408)
T TIGR03520       294 ----YGGTSGLVTLEDIIEEIVGDISDE  317 (408)
T ss_pred             ----CCCEEEEEEHHHHHHHHhCCCCCc
Confidence                456999999999999987665544

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=99.44  E-value=1e-12  Score=111.42  Aligned_cols=121  Identities=21%  Similarity=0.246  Sum_probs=95.1

Q ss_pred             CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262          264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF  343 (447)
Q Consensus       264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~  343 (447)
                      ++.+++++.++.++.+.+.+.+++.+||++++           ++++|+|+.++|...+.......         .    
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-----------~~~~Giv~~~~l~~~~~~~~~~~---------~----   58 (124)
T cd04600           3 DVVTVTPDTSLEEAWALLRRHRIKALPVVDGD-----------RRLVGIVTQRDLLRHARPDGRRP---------L----   58 (124)
T ss_pred             CcEEeCCCCCHHHHHHHHHHcCCceeeEECCC-----------CCEEEEEEHHHHHhhhcccccch---------h----
Confidence            67889999999999999998899999999886           89999999999976543211000         0    


Q ss_pred             hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262          344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR  423 (447)
Q Consensus       344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr  423 (447)
                        .....             ......++.++|++.+.++++++++.+++++|.+.+.+.+||+|+     +|+++|+||+
T Consensus        59 --~~~~~-------------~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~g~~~Gvit~  118 (124)
T cd04600          59 --RGRLR-------------GRDKPETVGDIMSPPVVTVRPDTPIAELVPLLADGGHHHVPVVDE-----DRRLVGIVTQ  118 (124)
T ss_pred             --hhhhh-------------cccccccHHHhccCCCeeeCCCCcHHHHHHHHHhcCCCceeEEcC-----CCCEEEEEEh
Confidence              00000             001223567788889999999999999999999999999999997     5679999999


Q ss_pred             HHHHH
Q 013262          424 QDLRA  428 (447)
Q Consensus       424 ~DLl~  428 (447)
                      +|+++
T Consensus       119 ~di~~  123 (124)
T cd04600         119 TDLIA  123 (124)
T ss_pred             HHhhc
Confidence            99975

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.44  E-value=1.2e-12  Score=108.68  Aligned_cols=109  Identities=27%  Similarity=0.312  Sum_probs=91.0

Q ss_pred             CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262          264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF  343 (447)
Q Consensus       264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~  343 (447)
                      ++.+++++.+++++.+.+.+.+++.+||++++           ++++|+|+..++.+.+....                 
T Consensus         2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~-----------~~~~G~v~~~~l~~~~~~~~-----------------   53 (111)
T cd04639           2 HFETLSPADTLDDAADALLATTQHEFPVVDGD-----------GHLVGLLTRDDLIRALAEGG-----------------   53 (111)
T ss_pred             CceEcCCCCcHHHHHHHHHHcCCCcceEECCC-----------CcEEEEeeHHHHHHHHHhcC-----------------
Confidence            56788999999999999988888999999986           89999999999977543211                 


Q ss_pred             hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262          344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR  423 (447)
Q Consensus       344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr  423 (447)
                                             ...++.++|...+.++.+++++.++++.|.+.+.+++||+|+     +++++|+||+
T Consensus        54 -----------------------~~~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~-----~~~~~G~it~  105 (111)
T cd04639          54 -----------------------PDAPVRGVMRRDFPTVSPSATLDAVLRLMQQGGAPAVPVVDG-----SGRLVGLVTL  105 (111)
T ss_pred             -----------------------CCCcHHHHhcCCCcEECCCCcHHHHHHHHHhcCCceeeEEcC-----CCCEEEEEEH
Confidence                                   001244566678889999999999999999999999999986     4689999999


Q ss_pred             HHHHH
Q 013262          424 QDLRA  428 (447)
Q Consensus       424 ~DLl~  428 (447)
                      +|+.+
T Consensus       106 ~dl~~  110 (111)
T cd04639         106 ENVGE  110 (111)
T ss_pred             HHhhc
Confidence            99975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=99.44  E-value=1.5e-12  Score=109.09  Aligned_cols=113  Identities=24%  Similarity=0.278  Sum_probs=92.3

Q ss_pred             CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262          264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF  343 (447)
Q Consensus       264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~  343 (447)
                      ++.++++++++.++.+.|.+.+++.+||+|++           ++++|+++.+||...+.+....               
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~-----------~~~~G~v~~~dl~~~~~~~~~~---------------   55 (115)
T cd04593           2 PPPVLSATTPLREAAEQLIESKHGSALVVDRD-----------GGVVGIITLPDLLRALEADEAG---------------   55 (115)
T ss_pred             CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCC-----------CCEEEEEEHHHHHHHHhccccc---------------
Confidence            56688999999999999998889999999986           8999999999998754321100               


Q ss_pred             hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262          344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR  423 (447)
Q Consensus       344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr  423 (447)
                                             ....++++|..++.++.+++++.+++++|.+.+.+++||+|+   ++.++++|+||+
T Consensus        56 -----------------------~~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~---~~~~~~~Gvit~  109 (115)
T cd04593          56 -----------------------EPSAVDEVATPPLLTVHPDEPLAHALDRMASRGLRQLPVVDR---GNPGQVLGLLTR  109 (115)
T ss_pred             -----------------------ccccHHHhccCCceEECCCCCHHHHHHHHHHcCCceeeEEeC---CCCCeEEEEEEh
Confidence                                   001244566788899999999999999999999999999987   322689999999


Q ss_pred             HHHHH
Q 013262          424 QDLRA  428 (447)
Q Consensus       424 ~DLl~  428 (447)
                      +|+++
T Consensus       110 ~di~~  114 (115)
T cd04593         110 ENVLL  114 (115)
T ss_pred             HHhhc
Confidence            99986

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.42  E-value=1.8e-12  Score=109.39  Aligned_cols=113  Identities=19%  Similarity=0.176  Sum_probs=89.7

Q ss_pred             CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262          264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF  343 (447)
Q Consensus       264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~  343 (447)
                      ++.++++++++.++.+.|..++.+.+||+|++           ++++|+|+..|+.+......   +.            
T Consensus         2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~-----------~~~~Givt~~dl~~~~~~~~---~~------------   55 (118)
T cd04617           2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDED-----------GDLVGVVSRKDLLKASIGGA---DL------------   55 (118)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-----------CCEEEEEEHHHHHHHHHcCC---Cc------------
Confidence            56789999999999999988888999999986           78999999999977543211   00            


Q ss_pred             hHHHHhhhcccccccccchhhhhhccCccccccC--CCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCC-CCcEEEE
Q 013262          344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNT--TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAG-VSPVVGI  420 (447)
Q Consensus       344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~--~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g-~~~lvGI  420 (447)
                                             ....+.++|.+  .+.++++++++.+++++|.+.+.+++||+|+   ++ .++++|+
T Consensus        56 -----------------------~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~---~~~~~~l~Gv  109 (118)
T cd04617          56 -----------------------QKVPVGVIMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEK---VDEGLEVIGR  109 (118)
T ss_pred             -----------------------cCCCHHHHhCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeC---CCccceEEEE
Confidence                                   00123335543  5779999999999999999999999999987   21 1589999


Q ss_pred             EeHHHHHH
Q 013262          421 LTRQDLRA  428 (447)
Q Consensus       421 ITr~DLl~  428 (447)
                      ||++|+++
T Consensus       110 it~~~l~~  117 (118)
T cd04617         110 ITKTNITK  117 (118)
T ss_pred             EEhhheec
Confidence            99999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=99.42  E-value=1.5e-12  Score=107.99  Aligned_cols=105  Identities=24%  Similarity=0.326  Sum_probs=89.3

Q ss_pred             CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262          264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF  343 (447)
Q Consensus       264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~  343 (447)
                      ++.+++++++++++.+.+.+.+++.+||+|++           ++++|+|+..++....      .              
T Consensus         3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~-----------~~~~G~v~~~~l~~~~------~--------------   51 (108)
T cd04596           3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDEK-----------NKVVGIVTSKDVAGKD------P--------------   51 (108)
T ss_pred             ccEEeCCCCCHHHHHHHHHHcCCCceeEECCC-----------CeEEEEecHHHHhccc------c--------------
Confidence            67889999999999999998888999999986           8999999999985310      0              


Q ss_pred             hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262          344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR  423 (447)
Q Consensus       344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr  423 (447)
                                              ..+++++|...+.++++++++.+++++|.+.+.+.+||+|+     +|+++|+||+
T Consensus        52 ------------------------~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~~~~~G~it~  102 (108)
T cd04596          52 ------------------------DTTIEKVMTKNPITVNPKTSVASVAHMMIWEGIEMLPVVDD-----NKKLLGIISR  102 (108)
T ss_pred             ------------------------cccHHHHhcCCCeEECCCCCHHHHHHHHHHcCCCeeeEEcC-----CCCEEEEEEH
Confidence                                    01234456677889999999999999999999999999987     5689999999


Q ss_pred             HHHHH
Q 013262          424 QDLRA  428 (447)
Q Consensus       424 ~DLl~  428 (447)
                      +|+++
T Consensus       103 ~di~~  107 (108)
T cd04596         103 QDVLK  107 (108)
T ss_pred             HHhhc
Confidence            99975

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=99.42  E-value=4e-12  Score=105.42  Aligned_cols=107  Identities=21%  Similarity=0.315  Sum_probs=90.3

Q ss_pred             CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262          264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF  343 (447)
Q Consensus       264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~  343 (447)
                      ++.+++++.++.++++.+.+++++.+||+|++           ++++|+++.++++..+....                 
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~-----------~~~~G~v~~~~l~~~~~~~~-----------------   54 (110)
T cd04605           3 PVVTISEDASIKEAAKLMIEENINHLPVVDED-----------GRLVGIVTSWDISKAVARDK-----------------   54 (110)
T ss_pred             CCEEECCCCCHHHHHHHHHhCCCceEEEECCC-----------CcEEEEEeHHHHHHHHhhCc-----------------
Confidence            67789999999999999998889999999886           89999999999976442210                 


Q ss_pred             hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262          344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR  423 (447)
Q Consensus       344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr  423 (447)
                                               .++.++|.+++.++.+++++.++++.|.+.+.+.+||+++     +++++|+||+
T Consensus        55 -------------------------~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~~~~~G~v~~  104 (110)
T cd04605          55 -------------------------KSVEDIMTRNVITATPDEPIDVAARKMERHNISALPVVDA-----ENRVIGIITS  104 (110)
T ss_pred             -------------------------cCHHHhcCCCCeEECCCCcHHHHHHHHHHhCCCEEeEECC-----CCcEEEEEEH
Confidence                                     0133456678889999999999999999999999999987     4679999999


Q ss_pred             HHHHH
Q 013262          424 QDLRA  428 (447)
Q Consensus       424 ~DLl~  428 (447)
                      +|+.+
T Consensus       105 ~di~~  109 (110)
T cd04605         105 EDISK  109 (110)
T ss_pred             HHhhh
Confidence            99964

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.42  E-value=9.1e-13  Score=112.73  Aligned_cols=112  Identities=15%  Similarity=0.193  Sum_probs=91.7

Q ss_pred             CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262          264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF  343 (447)
Q Consensus       264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~  343 (447)
                      ++.++++++++.++.+.|++++++.+||+|++           ++++|+|+.+++...+...+..               
T Consensus         3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~-----------~~~~Gii~~~dl~~~~~~~~~~---------------   56 (124)
T cd04608           3 APVTVLPTVTCAEAIEILKEKGFDQLPVVDES-----------GKILGMVTLGNLLSSLSSGKVQ---------------   56 (124)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-----------CCEEEEEEHHHHHHHHHHhccC---------------
Confidence            67889999999999999999999999999986           8899999999998654432100               


Q ss_pred             hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHH---------cCCCEEEEEeCcccCCC
Q 013262          344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQ---------VGLRHLLVVPKYEAAGV  414 (447)
Q Consensus       344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~---------~gl~~LpVVd~~~~~g~  414 (447)
                                             ....++++|++++.++.+++++.++.+++..         .+.+++||+++     +
T Consensus        57 -----------------------~~~~v~~im~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-----~  108 (124)
T cd04608          57 -----------------------PSDPVSKALYKQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEK-----Q  108 (124)
T ss_pred             -----------------------CCCcHHHHhhccceecCCCCCHHHHHhhcccCCceEEEecccccccccccc-----c
Confidence                                   1134667888999999999999999996533         36788899986     5


Q ss_pred             CcEEEEEeHHHHHHH
Q 013262          415 SPVVGILTRQDLRAF  429 (447)
Q Consensus       415 ~~lvGIITr~DLl~~  429 (447)
                      |+++||||+.|++++
T Consensus       109 ~~~~Givt~~Dl~~~  123 (124)
T cd04608         109 EKPIGIVTKIDLLSY  123 (124)
T ss_pred             cceEEEEehhHhhhh
Confidence            689999999999975

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.41  E-value=1e-12  Score=137.25  Aligned_cols=150  Identities=15%  Similarity=0.181  Sum_probs=111.0

Q ss_pred             CCchHHHHHHhhCCCCCCCC-C-Ccccc-cccccccccCC-CCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCC
Q 013262          226 NPSIYEIILELKGLPFLDAH-P-EPWMR-TLTVGELIDAK-PPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSG  301 (447)
Q Consensus       226 ~~sIYd~~l~~kg~p~l~~~-~-~~~l~-~l~v~diM~~~-~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~  301 (447)
                      ...+--.+++.+|+.+.+.. + +...+ -.+|+++|... .+..++++++++.++++.|.+++++.+||+|++      
T Consensus        64 gdalAiala~~gG~g~Ih~n~sie~qa~lV~kVk~~~~g~i~~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~------  137 (502)
T PRK07107         64 DDNMAIALAREGGLSFIFGSQSIESEAAMVRRVKNYKAGFVVSDSNLTPDNTLADVLDLKEKTGHSTVAVTEDG------  137 (502)
T ss_pred             hHHHHHHHHHcCCCeEeeCCCCHHHHHHHHHHHHHHhcCCcCCCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCC------
Confidence            45566667778888765321 1 11111 13577888631 134689999999999999999999999999962      


Q ss_pred             CCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccC--CC
Q 013262          302 LANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNT--TP  379 (447)
Q Consensus       302 ~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~--~p  379 (447)
                        .++++++|+|+..|+....  ..                                        ...+++++|++  ++
T Consensus       138 --~~~gkLvGIVT~~DLr~~~--~~----------------------------------------~~~~V~dIMt~~~~~  173 (502)
T PRK07107        138 --TAHGKLLGIVTSRDYRISR--MS----------------------------------------LDTKVKDFMTPFEKL  173 (502)
T ss_pred             --CcCCEEEEEEEcHHhhccc--cC----------------------------------------CCCCHHHHhCCCCCe
Confidence              1138999999999985310  00                                        01235566765  67


Q ss_pred             ceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHH
Q 013262          380 YTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFN  430 (447)
Q Consensus       380 ~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~  430 (447)
                      +++++++++.+|+++|.+++++++||||+     +++++|+||++|+++..
T Consensus       174 itv~~d~~l~eAl~lM~e~~i~~LPVVD~-----~g~LvGIIT~~Dilk~~  219 (502)
T PRK07107        174 VTANEGTTLKEANDIIWDHKLNTLPIVDK-----NGNLVYLVFRKDYDSHK  219 (502)
T ss_pred             EEECCCCcHHHHHHHHHHcCCCEEEEEcC-----CCeEEEEEEhHHHHhcc
Confidence            88999999999999999999999999987     56799999999999854

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.40  E-value=4.3e-12  Score=105.43  Aligned_cols=111  Identities=23%  Similarity=0.297  Sum_probs=91.3

Q ss_pred             CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262          264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF  343 (447)
Q Consensus       264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~  343 (447)
                      ++.+++++.++.++.+.+.+.+++.+||+|++           ++++|+++.+|+...+......               
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~-----------~~~~Giv~~~~l~~~~~~~~~~---------------   55 (113)
T cd04623           2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDG-----------GRLVGIFSERDIVRKVALRGAS---------------   55 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEECCC-----------CCEEEEEehHHHHHHHhhcCCC---------------
Confidence            56788999999999999998899999999986           7999999999998755321100               


Q ss_pred             hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262          344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR  423 (447)
Q Consensus       344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr  423 (447)
                                            ....++.++|..++.++.+++++.++++.|.+.+.+++||+++      ++++|+||+
T Consensus        56 ----------------------~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~------~~~~Gvit~  107 (113)
T cd04623          56 ----------------------ALDTPVSEIMTRNVITVTPDDTVDEAMALMTERRFRHLPVVDG------GKLVGIVSI  107 (113)
T ss_pred             ----------------------ccccCHHHhcCCCcEEECCCCcHHHHHHHHHHcCCCEeEEEeC------CEEEEEEEH
Confidence                                  0012345567778889999999999999999999999999974      579999999


Q ss_pred             HHHHH
Q 013262          424 QDLRA  428 (447)
Q Consensus       424 ~DLl~  428 (447)
                      +|+++
T Consensus       108 ~di~~  112 (113)
T cd04623         108 GDVVK  112 (113)
T ss_pred             HHhhc
Confidence            99975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.40  E-value=3.9e-12  Score=103.71  Aligned_cols=94  Identities=18%  Similarity=0.315  Sum_probs=83.4

Q ss_pred             CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262          264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF  343 (447)
Q Consensus       264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~  343 (447)
                      +++++++++++.++.+.|.+.+.+.+||+|++           ++++|+++.+|+...                      
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~-----------~~~~Giv~~~dl~~~----------------------   48 (96)
T cd04614           2 NVPTVWEETPLPVAVRIMELANVKALPVLDDD-----------GKLSGIITERDLIAK----------------------   48 (96)
T ss_pred             CccEeCCCCcHHHHHHHHHHcCCCeEEEECCC-----------CCEEEEEEHHHHhcC----------------------
Confidence            57789999999999999988889999999986           899999999998430                      


Q ss_pred             hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262          344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR  423 (447)
Q Consensus       344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr  423 (447)
                                                       ..+.++++++++.+++++|.+.+.+++||+|+     +++++|+||+
T Consensus        49 ---------------------------------~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~-----~~~~~Giit~   90 (96)
T cd04614          49 ---------------------------------SEVVTATKRTTVSECAQKMKRNRIEQIPIING-----NDKLIGLLRD   90 (96)
T ss_pred             ---------------------------------CCcEEecCCCCHHHHHHHHHHhCCCeeeEECC-----CCcEEEEEEH
Confidence                                             11668899999999999999999999999986     4689999999


Q ss_pred             HHHHH
Q 013262          424 QDLRA  428 (447)
Q Consensus       424 ~DLl~  428 (447)
                      +|+++
T Consensus        91 ~di~~   95 (96)
T cd04614          91 HDLLK   95 (96)
T ss_pred             HHhhc
Confidence            99985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=99.39  E-value=3.4e-12  Score=106.74  Aligned_cols=109  Identities=23%  Similarity=0.309  Sum_probs=86.7

Q ss_pred             CeeEecCCCCHHHHHHHHhcCC-CCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhc
Q 013262          264 PVITLSGIEKVSQIVDVLRNTT-HNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREK  342 (447)
Q Consensus       264 ~vv~l~~~~tv~~~~~~L~~~~-~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~  342 (447)
                      ++.++++++++.++.+.|.+.+ .+.+||+|++           ++++|+|+.+|+.......+                
T Consensus         2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~-----------~~~~G~v~~~dl~~~~~~~~----------------   54 (114)
T cd04801           2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNE-----------GRYVGIISLADLRAIPTSQW----------------   54 (114)
T ss_pred             CcceeCCCCCHHHHHHHHhccCCceeEEEEcCC-----------CcEEEEEEHHHHHHHHHhhc----------------
Confidence            5778999999999999887664 7889999886           89999999999976442110                


Q ss_pred             chHHHHhhhcccccccccchhhhhhccCccccccC--CCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEE
Q 013262          343 FSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNT--TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGI  420 (447)
Q Consensus       343 ~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~--~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGI  420 (447)
                                              ....+.++|+.  .+.++.+++++.++++.|++.+.+++||+|+     +++++|+
T Consensus        55 ------------------------~~~~v~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~-----~~~~~Gv  105 (114)
T cd04801          55 ------------------------AQTTVIQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVED-----SGQVIGL  105 (114)
T ss_pred             ------------------------cccchhhhhcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcC-----CCcEEEE
Confidence                                    00123344543  2568999999999999999999999999986     4679999


Q ss_pred             EeHHHHHH
Q 013262          421 LTRQDLRA  428 (447)
Q Consensus       421 ITr~DLl~  428 (447)
                      ||++|+++
T Consensus       106 l~~~di~~  113 (114)
T cd04801         106 ITEADLLR  113 (114)
T ss_pred             Eeccceec
Confidence            99999864

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.39  E-value=4.6e-12  Score=106.03  Aligned_cols=112  Identities=13%  Similarity=0.252  Sum_probs=90.7

Q ss_pred             CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262          264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF  343 (447)
Q Consensus       264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~  343 (447)
                      ++.++++++++.++++.|.+.+++.+||+|++          .++++|+++.+|+++.+.......              
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~----------~~~~~G~v~~~dl~~~~~~~~~~~--------------   57 (114)
T cd04630           2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRR----------ESDAYGIVTMRDILKKVVAEGRDP--------------   57 (114)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCEEEEEECC----------CCcEEEEEehHHHHHHHHhCCCCC--------------
Confidence            67789999999999999998889999999862          168999999999987553311000              


Q ss_pred             hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262          344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR  423 (447)
Q Consensus       344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr  423 (447)
                                             ...++.++|.+++.++++++++.+++++|.+.+.+.+||+|+      |+++|+||+
T Consensus        58 -----------------------~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~------~~~~Gvi~~  108 (114)
T cd04630          58 -----------------------DRVNVYEIMTKPLISVSPDMDIKYCARLMERTNIRRAPVVEN------NELIGIISL  108 (114)
T ss_pred             -----------------------CccCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCEeeEeeC------CEEEEEEEH
Confidence                                   012344567778889999999999999999999999999974      579999999


Q ss_pred             HHHHH
Q 013262          424 QDLRA  428 (447)
Q Consensus       424 ~DLl~  428 (447)
                      +|+++
T Consensus       109 ~dl~~  113 (114)
T cd04630         109 TDIFL  113 (114)
T ss_pred             HHhhc
Confidence            99975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.39  E-value=5.9e-12  Score=103.98  Aligned_cols=106  Identities=21%  Similarity=0.315  Sum_probs=89.5

Q ss_pred             CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262          264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF  343 (447)
Q Consensus       264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~  343 (447)
                      ++.+++++.++.++.+.|.+.++..+||+|++           ++++|+++..|+.......                  
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-----------~~~~G~v~~~dl~~~~~~~------------------   53 (109)
T cd04583           3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDKD-----------NKLLGIVSLESLEQAYKEA------------------   53 (109)
T ss_pred             CCEEECCCCCHHHHHHHHHHCCCceEEEEcCC-----------CcEEEEEEHHHHHHHhhcC------------------
Confidence            56788999999999999998889999999986           8999999999996532110                  


Q ss_pred             hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262          344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR  423 (447)
Q Consensus       344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr  423 (447)
                                               .++.++|...+.++++++++.++++.|.+.+.+++||+++     +|+++|+||+
T Consensus        54 -------------------------~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~-----~g~~~Gvit~  103 (109)
T cd04583          54 -------------------------KSLEDIMLEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDE-----DGKLVGLITR  103 (109)
T ss_pred             -------------------------CcHhHhhcCCceEECCCCcHHHHHHHHHHcCCceeeEECC-----CCeEEEEEeh
Confidence                                     1234456678889999999999999999999999999987     5679999999


Q ss_pred             HHHHH
Q 013262          424 QDLRA  428 (447)
Q Consensus       424 ~DLl~  428 (447)
                      +|+++
T Consensus       104 ~~l~~  108 (109)
T cd04583         104 SSLVD  108 (109)
T ss_pred             HHhhc
Confidence            99975

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.39  E-value=3.7e-12  Score=107.67  Aligned_cols=120  Identities=24%  Similarity=0.307  Sum_probs=94.5

Q ss_pred             CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262          264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF  343 (447)
Q Consensus       264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~  343 (447)
                      ++.++.+++++.++.+.|.+.+++.+||++++           ++++|+++.+++...+........             
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-----------~~~~G~v~~~~l~~~~~~~~~~~~-------------   57 (122)
T cd04803           2 PVVTLSEDDSLADAEELMREHRIRHLPVVNED-----------GKLVGLLTQRDLLRAALSSLSDNG-------------   57 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCcccccEECCC-----------CCEEEEEEHHHHHHHhcccccccc-------------
Confidence            56788999999999999999999999999986           899999999999875432110000             


Q ss_pred             hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262          344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR  423 (447)
Q Consensus       344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr  423 (447)
                        .+..              +.....++.++|+.++.++.+++++.++++.|.+.+.+.+||+|+     +++++|+||+
T Consensus        58 --~~~~--------------~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~-----~~~~~Gvit~  116 (122)
T cd04803          58 --EESL--------------TKERDVPVAEVMKTDVLTVTPDTPLREAAEIMVENKIGCLPVVDD-----KGTLVGIITR  116 (122)
T ss_pred             --cccc--------------ccccCcCHHHhhCCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcC-----CCCEEEEEEH
Confidence              0000              001234566778888999999999999999999999999999986     4679999999


Q ss_pred             HHHHH
Q 013262          424 QDLRA  428 (447)
Q Consensus       424 ~DLl~  428 (447)
                      +|+++
T Consensus       117 ~dl~~  121 (122)
T cd04803         117 SDFLR  121 (122)
T ss_pred             HHhhc
Confidence            99985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=99.39  E-value=3.2e-12  Score=133.55  Aligned_cols=148  Identities=16%  Similarity=0.158  Sum_probs=112.7

Q ss_pred             hcCCchHHHHHHhhCCCCCCC-CCCcccccccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCC
Q 013262          224 SFNPSIYEIILELKGLPFLDA-HPEPWMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGL  302 (447)
Q Consensus       224 ~l~~sIYd~~l~~kg~p~l~~-~~~~~l~~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~  302 (447)
                      ++..-+++.|+..+|+-.... ...+.++.++++++|.+  ++.++++++++.++++.|.+++++.+||+|++       
T Consensus       305 y~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~~v~~im~~--~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~-------  375 (454)
T TIGR01137       305 YMTKFLNDEWMKDNGFLDDEVLTVFDVLKNATVKDLHLP--APVTVHPTETVGDAIEILREYGFDQLPVVTEA-------  375 (454)
T ss_pred             ccCcccChHHHHhcCCcccccccHHHHhccCCHHHhCcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC-------
Confidence            334455668888887632211 12344788999999998  89999999999999999998889999999986       


Q ss_pred             CCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCcee
Q 013262          303 ANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTV  382 (447)
Q Consensus       303 ~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV  382 (447)
                          ++++|+|+.+|+.+.+......                                      ...++.++|.+++.++
T Consensus       376 ----~~~~Givt~~dl~~~~~~~~~~--------------------------------------~~~~v~~im~~~~~~v  413 (454)
T TIGR01137       376 ----GKVLGSVTLRELLSALFAGKAN--------------------------------------PDDAVSKVMSKKFIQI  413 (454)
T ss_pred             ----CeEEEEEEHHHHHHHHhccCCC--------------------------------------cCCCHHHhcCCCCeEE
Confidence                8999999999998754321000                                      0113455677888899


Q ss_pred             cCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHH
Q 013262          383 IESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFN  430 (447)
Q Consensus       383 ~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~  430 (447)
                      ++++++.+++++|.+.+   .+||++     +++++|+||++|+++++
T Consensus       414 ~~~~~l~~a~~~~~~~~---~~vV~~-----~g~liGvvt~~dll~~l  453 (454)
T TIGR01137       414 GEGEKLSDLSKFLEKNS---SAIVTE-----EGKPIGVVTKIDLLSFL  453 (454)
T ss_pred             CCcCcHHHHHHHHHHCC---eeEEEE-----CCEEEEEEEHHHHHHhh
Confidence            99999999999999864   355654     46799999999999864

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=99.39  E-value=2.4e-12  Score=111.35  Aligned_cols=132  Identities=21%  Similarity=0.264  Sum_probs=94.9

Q ss_pred             CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262          264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF  343 (447)
Q Consensus       264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~  343 (447)
                      ++.+++++.++.++.+.|.+++++.+||+|++           ++++|+|++.|+...+.... .+..   ..+. ....
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~-----------~~~~Gvi~~~dl~~~~~~~~-~~~~---~~~~-~~~~   66 (135)
T cd04586           3 DVVTVSPETSVAEAARLMLDNHISGLPVVDDD-----------GRLVGIVSEGDLLRRAELGT-ERRR---ARWL-DLLA   66 (135)
T ss_pred             CCEEeCCCCCHHHHHHHHHHcCCCCceEECCC-----------CCEEEEeeHHHHHHHhcccC-cchh---hhHH-HHhc
Confidence            67889999999999999999999999999986           89999999999986543210 0000   0000 0000


Q ss_pred             hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262          344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR  423 (447)
Q Consensus       344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr  423 (447)
                      ...++..           ........++.++|+..+.++.+++++.++++.|.+.+.+++||+|+      |+++|+||+
T Consensus        67 ~~~~~~~-----------~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd~------g~~~Gvit~  129 (135)
T cd04586          67 GAEELAA-----------AFVRSHGRKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVRG------GRLVGIVSR  129 (135)
T ss_pred             chHHHHH-----------HHHHhcCCCHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEecC------CEEEEEEEh
Confidence            0000000           00001223577788888999999999999999999999999999974      579999999


Q ss_pred             HHHHH
Q 013262          424 QDLRA  428 (447)
Q Consensus       424 ~DLl~  428 (447)
                      +|+++
T Consensus       130 ~di~~  134 (135)
T cd04586         130 ADLLR  134 (135)
T ss_pred             Hhhhc
Confidence            99975

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.39  E-value=5.1e-12  Score=104.07  Aligned_cols=104  Identities=14%  Similarity=0.123  Sum_probs=87.4

Q ss_pred             CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262          264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF  343 (447)
Q Consensus       264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~  343 (447)
                      ++.+++++.++.++.+.|.+.+++.+||+|++           ++++|+++..|+.+....                   
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~-----------g~~~Giv~~~dl~~~~~~-------------------   51 (106)
T cd04582           2 EPITVRPDDPLSDALGLMDDSDLRALTVVDAD-----------GQPLGFVTRREAARASGG-------------------   51 (106)
T ss_pred             CCcEecCCCcHHHHHHHHHhcCCCEEEEECCC-----------CCEEEEEeHHHHHHhccc-------------------
Confidence            56788999999999999988888999999876           899999999999652100                   


Q ss_pred             hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262          344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR  423 (447)
Q Consensus       344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr  423 (447)
                                                ++.++|.+.+.++.+++++.+++++|.+.+...+||+|+     +++++|+||+
T Consensus        52 --------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~-----~~~~~Gvi~~  100 (106)
T cd04582          52 --------------------------CCGDHAEPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDE-----DGRYVGEVTQ  100 (106)
T ss_pred             --------------------------chhhhcccCCEEECCCCCHHHHHHHHHHCCCCeeeEECC-----CCcEEEEEEH
Confidence                                      123345566778999999999999999999999999987     4679999999


Q ss_pred             HHHHH
Q 013262          424 QDLRA  428 (447)
Q Consensus       424 ~DLl~  428 (447)
                      +|+++
T Consensus       101 ~~l~~  105 (106)
T cd04582         101 RSIAD  105 (106)
T ss_pred             HHhhc
Confidence            99975

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=99.38  E-value=6.3e-12  Score=104.95  Aligned_cols=110  Identities=22%  Similarity=0.259  Sum_probs=90.2

Q ss_pred             CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262          264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF  343 (447)
Q Consensus       264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~  343 (447)
                      +..+++++.++.++.+.|.+.+++.+||++++           ++++|+++.+|+...+....   .             
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-----------~~~~G~v~~~dl~~~~~~~~---~-------------   55 (113)
T cd04607           3 KQLLVSPDASILDALRKIDKNALRIVLVVDEN-----------GRLLGTVTDGDIRRALLKGL---S-------------   55 (113)
T ss_pred             cceEECCCCCHHHHHHHHHhcCcCEEEEECCC-----------CCEEEEEEcHHHHHHHhcCC---C-------------
Confidence            34678999999999999988888899999887           89999999999976543211   0             


Q ss_pred             hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262          344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR  423 (447)
Q Consensus       344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr  423 (447)
                                             ....+.++|...+.++++++++.++++.|.+.+.+++||+|+     +++++|+||+
T Consensus        56 -----------------------~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~~~~~Gvit~  107 (113)
T cd04607          56 -----------------------LDDPVSEVMNRNPITAKVGSSREEILALMRERSIRHLPILDE-----EGRVVGLATL  107 (113)
T ss_pred             -----------------------cCCCHHHhhcCCCEEEcCCCCHHHHHHHHHHCCCCEEEEECC-----CCCEEEEEEh
Confidence                                   001244566677889999999999999999999999999986     4679999999


Q ss_pred             HHHHH
Q 013262          424 QDLRA  428 (447)
Q Consensus       424 ~DLl~  428 (447)
                      +|++.
T Consensus       108 ~di~~  112 (113)
T cd04607         108 DDLLS  112 (113)
T ss_pred             HHhcc
Confidence            99874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.38  E-value=6e-12  Score=107.61  Aligned_cols=126  Identities=24%  Similarity=0.273  Sum_probs=93.7

Q ss_pred             CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262          264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF  343 (447)
Q Consensus       264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~  343 (447)
                      ++.+++++.++.++.+.|.+.+++.+||+|++           ++++|+|+..|+..++..........     .    .
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~-----------~~~~G~it~~dl~~~~~~~~~~~~~~-----~----~   61 (128)
T cd04632           2 DVITVREDDSVGKAINVLREHGISRLPVVDDN-----------GKLTGIVTRHDIVDFVVRDRDKARTG-----D----R   61 (128)
T ss_pred             CceEeCCCCCHHHHHHHHHHcCCCEEEEECCC-----------CcEEEEEEHHHHHHHHhhhhhhcchh-----h----h
Confidence            56788999999999999999999999999987           89999999999987553211000000     0    0


Q ss_pred             hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262          344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR  423 (447)
Q Consensus       344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr  423 (447)
                      .. +               .+.....+++++|+++++++.+++++.++++.|.+.+.+.+||+++   +.+++++|+||+
T Consensus        62 ~~-~---------------~~~~~~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~---~~~~~~~Gvit~  122 (128)
T cd04632          62 SG-E---------------KERMLDLPVYDAMSSPVITASPNDSVRDAVDRMLENDDSSVVVVTP---DDDTKVVGILTK  122 (128)
T ss_pred             hh-h---------------hhhhccCcHHHHhcCCCceECCCCcHHHHHHHHHhCCCCeEeEecc---CCCCcEEEEEEh
Confidence            00 0               0000113456778888899999999999999999999999999852   124689999999


Q ss_pred             HHHHH
Q 013262          424 QDLRA  428 (447)
Q Consensus       424 ~DLl~  428 (447)
                      +|+++
T Consensus       123 ~di~~  127 (128)
T cd04632         123 KDVLR  127 (128)
T ss_pred             Hhhhc
Confidence            99975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.38  E-value=4e-12  Score=105.99  Aligned_cols=112  Identities=20%  Similarity=0.250  Sum_probs=91.1

Q ss_pred             CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262          264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF  343 (447)
Q Consensus       264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~  343 (447)
                      ++.++++++++.++.+.+.+++.+.+||++++           ++++|+|+..++.+.+....+..              
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~-----------~~~~G~v~~~~l~~~~~~~~~~~--------------   56 (114)
T cd04629           2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDN-----------GNLVGFLSEQDCLKQLLESSYHC--------------   56 (114)
T ss_pred             CCeEeCCCCCHHHHHHHHHhcCCCCccEECCC-----------CeEEEEeehHHHHHHhhhhhhcc--------------
Confidence            56788999999999999988888899999986           89999999999976543211000              


Q ss_pred             hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262          344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR  423 (447)
Q Consensus       344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr  423 (447)
                                            ....++.++|+..+.++.+++++.++++.|.+.+.+++||+|+      ++++|+||+
T Consensus        57 ----------------------~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~------~~~~Gvit~  108 (114)
T cd04629          57 ----------------------DGVATVRDIMTTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD------GKLVGQISR  108 (114)
T ss_pred             ----------------------CCCccHHHHhccCceEECCCCcHHHHHHHHHHhCCCccCEEEC------CEEEEEEEH
Confidence                                  0012345567778889999999999999999999999999984      579999999


Q ss_pred             HHHHH
Q 013262          424 QDLRA  428 (447)
Q Consensus       424 ~DLl~  428 (447)
                      +|+++
T Consensus       109 ~di~~  113 (114)
T cd04629         109 RDVLR  113 (114)
T ss_pred             HHHhc
Confidence            99975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.38  E-value=5.8e-12  Score=104.79  Aligned_cols=112  Identities=23%  Similarity=0.368  Sum_probs=92.2

Q ss_pred             CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262          264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF  343 (447)
Q Consensus       264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~  343 (447)
                      ++.++++++++.++.+.+.+.+++.+||+|++           ++++|+|++.|+...+.+....               
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-----------~~~~G~v~~~~l~~~~~~~~~~---------------   55 (114)
T cd04613           2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDD-----------GRLVGIVSLDDIREILFDPSLY---------------   55 (114)
T ss_pred             CceeeCCCCcHHHHHHHHHhCCCcceeEECCC-----------CCEEEEEEHHHHHHHHhccccc---------------
Confidence            56789999999999999998889999999986           8999999999997654321000               


Q ss_pred             hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262          344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR  423 (447)
Q Consensus       344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr  423 (447)
                                             ...++.++|++.+.++.+++++.++++.|.+.+.+++||+|+   + .++++|+||+
T Consensus        56 -----------------------~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~---~-~~~~~Gvvt~  108 (114)
T cd04613          56 -----------------------DLVVASDIMTKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDD---D-PGKLLGILSR  108 (114)
T ss_pred             -----------------------ccEEHHHhccCCCcEEcCCCCHHHHHHHHhhCCccEeeEEeC---C-CCEEEEEEEh
Confidence                                   012345667788999999999999999999999999999974   1 3679999999


Q ss_pred             HHHHH
Q 013262          424 QDLRA  428 (447)
Q Consensus       424 ~DLl~  428 (447)
                      +|++.
T Consensus       109 ~di~~  113 (114)
T cd04613         109 SDLLS  113 (114)
T ss_pred             HHhhc
Confidence            99975

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.37  E-value=7.1e-12  Score=104.41  Aligned_cols=110  Identities=21%  Similarity=0.225  Sum_probs=90.0

Q ss_pred             eeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcch
Q 013262          265 VITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFS  344 (447)
Q Consensus       265 vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~~  344 (447)
                      +.++++++++.++.+.+.+.+++.+||+|++           ++++|+++.+|+.+.+......                
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~-----------~~~~G~v~~~dl~~~~~~~~~~----------------   55 (113)
T cd04615           3 PSCVVLNTDIARAVAEMYTSGSRALPVVDDK-----------KRLVGIITRYDVLSYALESEEL----------------   55 (113)
T ss_pred             CEEeeCCCcHHHHHHHHHHcCCceEeEEcCC-----------CCEEEEEEHHHHHHhhhhhhhh----------------
Confidence            4678999999999999998889999999986           8999999999997643221000                


Q ss_pred             HHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHH
Q 013262          345 WVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQ  424 (447)
Q Consensus       345 ~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~  424 (447)
                                            ...++.++|..++.++.+++++.++++.|.+.+...+||+|+     +|+++|+||++
T Consensus        56 ----------------------~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-----~g~~~Gvvt~~  108 (113)
T cd04615          56 ----------------------KDAKVREVMNSPVITIDANDSIAKARWLMSNNNISRLPVLDD-----KGKVGGIVTED  108 (113)
T ss_pred             ----------------------cCCcHHHhccCCceEECCCCcHHHHHHHHHHcCCCeeeEECC-----CCeEEEEEEHH
Confidence                                  011244567778889999999999999999999999999987     46899999999


Q ss_pred             HHHH
Q 013262          425 DLRA  428 (447)
Q Consensus       425 DLl~  428 (447)
                      |+++
T Consensus       109 dl~~  112 (113)
T cd04615         109 DILR  112 (113)
T ss_pred             Hhhc
Confidence            9974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.37  E-value=9e-12  Score=103.61  Aligned_cols=110  Identities=23%  Similarity=0.304  Sum_probs=91.2

Q ss_pred             CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262          264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF  343 (447)
Q Consensus       264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~  343 (447)
                      ++.+++++.+++++.+.+.+.+++.+||+|++           ++++|+|+..|++..+.... .               
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-----------~~~~G~v~~~~l~~~~~~~~-~---------------   54 (112)
T cd04624           2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPD-----------ERPIGIVTERDIVRAVAAGI-D---------------   54 (112)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCCEEEEECCC-----------CCEEEEeeHHHHHHHHhccC-C---------------
Confidence            56688999999999999988889999999987           89999999999976543210 0               


Q ss_pred             hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262          344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR  423 (447)
Q Consensus       344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr  423 (447)
                                             ...++.++|+.++.++.+++++.++++.|.+.+...+||+++     +|+++|+||+
T Consensus        55 -----------------------~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~-----~g~~~Gilt~  106 (112)
T cd04624          55 -----------------------LDTPVSEIMTRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDK-----GGELVGVISI  106 (112)
T ss_pred             -----------------------CccCHHHhccCCCEEECCCCcHHHHHHHHHHcCccEEEEEcC-----CCcEEEEEEH
Confidence                                   011244567778889999999999999999999999999987     4679999999


Q ss_pred             HHHHH
Q 013262          424 QDLRA  428 (447)
Q Consensus       424 ~DLl~  428 (447)
                      +|+++
T Consensus       107 ~dl~~  111 (112)
T cd04624         107 RDLVR  111 (112)
T ss_pred             HHhcc
Confidence            99975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.37  E-value=1.4e-11  Score=104.64  Aligned_cols=119  Identities=15%  Similarity=0.208  Sum_probs=90.2

Q ss_pred             CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262          264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF  343 (447)
Q Consensus       264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~  343 (447)
                      ++.++++++++.++.+.|.+.+++.+||+|++          +++++|+|+..|+.+.+.......              
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~----------~~~~~Giv~~~dl~~~~~~~~~~~--------------   57 (123)
T cd04627           2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEE----------SGEVIGILSQRRLVEFLWENARSF--------------   57 (123)
T ss_pred             CceecCCCCCHHHHHHHHhhCCcceEEEEeCC----------CCcEEEEEEHHHHHHHHHHhHHhc--------------
Confidence            57789999999999999998888999999872          168999999999987654321000              


Q ss_pred             hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262          344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR  423 (447)
Q Consensus       344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr  423 (447)
                      +..+...               ........+|..++.++++++++.+|++.|.+.+.+++||+|+     +++++|+||+
T Consensus        58 ~~~~~~~---------------~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-----~~~~vGiit~  117 (123)
T cd04627          58 PGLDPLY---------------PIPLRDLTIGTSDVISINGDQPLIDALHLMHNEGISSVAVVDN-----QGNLIGNISV  117 (123)
T ss_pred             cchhhhh---------------hhhhhhcccCcCCceEeCCCCCHHHHHHHHHHcCCceEEEECC-----CCcEEEEEeH
Confidence            0000000               0011223456778889999999999999999999999999987     5679999999


Q ss_pred             HHH
Q 013262          424 QDL  426 (447)
Q Consensus       424 ~DL  426 (447)
                      +|+
T Consensus       118 ~di  120 (123)
T cd04627         118 TDV  120 (123)
T ss_pred             HHh
Confidence            997

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.36  E-value=1.2e-11  Score=102.55  Aligned_cols=108  Identities=21%  Similarity=0.350  Sum_probs=89.9

Q ss_pred             CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262          264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF  343 (447)
Q Consensus       264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~  343 (447)
                      ++.++++++++.++.+.|.+.+++.+||+++            ++++|+++.+|+++.....+                 
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~------------~~~~G~v~~~~l~~~~~~~~-----------------   52 (110)
T cd04588           2 PLITLNPNATLREAARLFNTHHIHGAPVVDD------------GKLVGIVTLSDIAHAIARGL-----------------   52 (110)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC------------CEEEEEEEHHHHHHHHhccc-----------------
Confidence            6778999999999999999888999999986            68999999999977543211                 


Q ss_pred             hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262          344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR  423 (447)
Q Consensus       344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr  423 (447)
                                             ...++.++|...+.++.+++++.++++.|.+.+.+.+||+++     +++++|+||+
T Consensus        53 -----------------------~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-----~~~~~G~i~~  104 (110)
T cd04588          53 -----------------------ELAKVKDVMTKDVITIDEDEQLYDAIRLMNKHNVGRLIVTDD-----EGRPVGIITR  104 (110)
T ss_pred             -----------------------cccCHHHHhcCCceEECCCCCHHHHHHHHHhcCCCEEEEECC-----CCCEEEEEEh
Confidence                                   001244456678889999999999999999999999999986     4689999999


Q ss_pred             HHHHH
Q 013262          424 QDLRA  428 (447)
Q Consensus       424 ~DLl~  428 (447)
                      +|+++
T Consensus       105 ~dl~~  109 (110)
T cd04588         105 TDILR  109 (110)
T ss_pred             HHhhc
Confidence            99974

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=99.36  E-value=7.6e-12  Score=104.20  Aligned_cols=111  Identities=21%  Similarity=0.199  Sum_probs=91.4

Q ss_pred             CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262          264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF  343 (447)
Q Consensus       264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~  343 (447)
                      ++.+++++.++.++.+.+.+.+++.+||++++           ++++|+++..++.+.+.... ..              
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~-----------~~~~G~v~~~~i~~~~~~~~-~~--------------   56 (114)
T cd04604           3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDED-----------GRLVGIFTDGDLRRALEKGL-DI--------------   56 (114)
T ss_pred             cccccCCCCcHHHHHHHHHhcCccEEEEEcCC-----------CCEEEEechHHHHHHHhccC-cc--------------
Confidence            56678999999999999988888899999986           89999999999987654321 00              


Q ss_pred             hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262          344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR  423 (447)
Q Consensus       344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr  423 (447)
                                             ....+.++|...+.++.+++++.++++.|.+.+...+||+++     +++++|+||+
T Consensus        57 -----------------------~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~-----~~~~iG~it~  108 (114)
T cd04604          57 -----------------------LTLPVADVMTRNPKTIDPDALAAEALELMEENKITALPVVDD-----NGRPVGVLHI  108 (114)
T ss_pred             -----------------------ccCCHHHhhccCCeEECCCCcHHHHHHHHHHcCCCEEEEECC-----CCCEEEEEEH
Confidence                                   001244567777889999999999999999999999999986     4679999999


Q ss_pred             HHHHH
Q 013262          424 QDLRA  428 (447)
Q Consensus       424 ~DLl~  428 (447)
                      +|+++
T Consensus       109 ~di~~  113 (114)
T cd04604         109 HDLLR  113 (114)
T ss_pred             HHhhc
Confidence            99975

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.36  E-value=6.5e-12  Score=108.14  Aligned_cols=130  Identities=20%  Similarity=0.274  Sum_probs=94.9

Q ss_pred             CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262          264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF  343 (447)
Q Consensus       264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~  343 (447)
                      ++.++++++++.++.+.+.+.+++++||+|++           ++++|+|+..++...+..........     .    .
T Consensus         2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~-----------~~~~G~i~~~~l~~~~~~~~~~~~~~-----~----~   61 (132)
T cd04636           2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNE-----------GRVVGIVSEGDLIRKIYKGKGLFYVT-----L----L   61 (132)
T ss_pred             CCeEeCCCCcHHHHHHHHHHhCCCccceECCC-----------CCEEEEEeHHHHHHHHhccCCccccc-----c----c
Confidence            56789999999999999988889999999987           89999999999987654321000000     0    0


Q ss_pred             hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262          344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR  423 (447)
Q Consensus       344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr  423 (447)
                      ....+..     +    ...+.....++.++|++++..+.+++++.+++++|.+.+.+.+||+|+      ++++|+||+
T Consensus        62 ~~~~~~~-----~----~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~------~~~iGvit~  126 (132)
T cd04636          62 YSVIFLD-----E----SKIKKLLGKKVEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD------GKLVGIISR  126 (132)
T ss_pred             ccccccc-----h----HHHHHHcCCCHHHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC------CEEEEEEEH
Confidence            0000000     0    000001123577788888999999999999999999999999999984      579999999


Q ss_pred             HHHHH
Q 013262          424 QDLRA  428 (447)
Q Consensus       424 ~DLl~  428 (447)
                      +|+++
T Consensus       127 ~dl~~  131 (132)
T cd04636         127 GDIIR  131 (132)
T ss_pred             HHhhc
Confidence            99986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=99.36  E-value=1.2e-11  Score=102.61  Aligned_cols=107  Identities=23%  Similarity=0.313  Sum_probs=89.5

Q ss_pred             CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262          264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF  343 (447)
Q Consensus       264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~  343 (447)
                      ++.+++.+.++.++.+.+.+.+++.+||+|+            ++++|+++..|+...+...+                 
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~------------~~~~G~v~~~dl~~~~~~~~-----------------   53 (110)
T cd04595           3 PVKTVRPEATIEEARELLLRYGHTALPVVEG------------GRVVGIISRRDVEKALRHGL-----------------   53 (110)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCeeeEeeC------------CEEEEEEEHHHHHHHHhccc-----------------
Confidence            6778999999999999999888999999986            68999999999976442211                 


Q ss_pred             hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262          344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR  423 (447)
Q Consensus       344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr  423 (447)
                                             ...++.++|.+.+.++.+++++.+++++|.+.+.+++||+++      |+++|+||+
T Consensus        54 -----------------------~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~------~~~~Gvvt~  104 (110)
T cd04595          54 -----------------------GHAPVKDYMSTDVVTVPPDTPLSEVQELMVEHDIGRVPVVED------GRLVGIVTR  104 (110)
T ss_pred             -----------------------ccCcHHHHhcCCCEEECCCCcHHHHHHHHHHcCCCeeEEEeC------CEEEEEEEh
Confidence                                   012344567788899999999999999999999999999974      579999999


Q ss_pred             HHHHH
Q 013262          424 QDLRA  428 (447)
Q Consensus       424 ~DLl~  428 (447)
                      +|+++
T Consensus       105 ~di~~  109 (110)
T cd04595         105 TDLLR  109 (110)
T ss_pred             HHhhc
Confidence            99975

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.36  E-value=8.3e-12  Score=105.96  Aligned_cols=124  Identities=20%  Similarity=0.238  Sum_probs=94.3

Q ss_pred             CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262          264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF  343 (447)
Q Consensus       264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~  343 (447)
                      ++.+++++.++.++++.|.+.+++.+||+|++          +++++|+|++.|+...+.+..... ..     .   ..
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~----------~~~~~G~v~~~dl~~~~~~~~~~~-~~-----~---~~   62 (125)
T cd04631           2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEG----------TGKLVGIITATDILKYLGGGEKFN-KI-----K---TG   62 (125)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCcccceeEeCC----------CCEEEEEEEHHHHHHHhhccchhc-cc-----c---cc
Confidence            56788999999999999998889999999873          279999999999987654321000 00     0   00


Q ss_pred             hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262          344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR  423 (447)
Q Consensus       344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr  423 (447)
                      .                  .......++.++|.+.+.++++++++.++++.|.+.+.+.+||+|+     +|+++|+||+
T Consensus        63 ~------------------~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-----~~~~~Gvit~  119 (125)
T cd04631          63 N------------------GLEAINEPVRSIMTRNVITITPDDSIKDAAELMLEKRVGGLPVVDD-----DGKLVGIVTE  119 (125)
T ss_pred             c------------------cchhhhcCHHHHhcCCceEeCCCCcHHHHHHHHHHcCCceEEEEcC-----CCcEEEEEEH
Confidence            0                  0000123456677788999999999999999999999999999986     4679999999


Q ss_pred             HHHHHH
Q 013262          424 QDLRAF  429 (447)
Q Consensus       424 ~DLl~~  429 (447)
                      +|++++
T Consensus       120 ~di~~~  125 (125)
T cd04631         120 RDLLKA  125 (125)
T ss_pred             HHhhcC
Confidence            999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.36  E-value=1.1e-11  Score=105.86  Aligned_cols=124  Identities=20%  Similarity=0.280  Sum_probs=91.4

Q ss_pred             CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262          264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF  343 (447)
Q Consensus       264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~  343 (447)
                      ++.++++++++.++.+.|.+++++.+||+|++           ++++|+++..|+............            .
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~-----------~~~~Giv~~~dl~~~~~~~~~~~~------------~   58 (126)
T cd04642           2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEK-----------GKLIGNISASDLKGLLLSPDDLLL------------Y   58 (126)
T ss_pred             CeEEECCCccHHHHHHHHHHhCCCcccEECCC-----------CcEEEEEEHHHhhhhhcCcchhhc------------c
Confidence            56789999999999999998889999999986           899999999999875432110000            0


Q ss_pred             hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262          344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR  423 (447)
Q Consensus       344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr  423 (447)
                      ....+..       +.      ....+....|..++.++++++++.+++++|.+.+.+++||+|+     +++++|+||+
T Consensus        59 ~~~~~~~-------~~------~~~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~-----~~~~~Giit~  120 (126)
T cd04642          59 RTITFKE-------LS------EKFTDSDGVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVDE-----EGKPIGVITL  120 (126)
T ss_pred             cchhhhh-------hh------hhcccccccccCCCeEECCCCcHHHHHHHHHHhCCcEEEEECC-----CCCEEEEEEH
Confidence            0000000       00      0001122345677889999999999999999999999999987     5689999999


Q ss_pred             HHHHH
Q 013262          424 QDLRA  428 (447)
Q Consensus       424 ~DLl~  428 (447)
                      .|+++
T Consensus       121 ~dil~  125 (126)
T cd04642         121 TDIIS  125 (126)
T ss_pred             HHHhc
Confidence            99975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.35  E-value=6.3e-12  Score=106.23  Aligned_cols=120  Identities=23%  Similarity=0.359  Sum_probs=92.3

Q ss_pred             CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262          264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF  343 (447)
Q Consensus       264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~  343 (447)
                      ++.+++++.++.++.+.+.+.+++.+||+|++           ++++|++++.|++.......+....      ..    
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~-----------~~~~G~v~~~~l~~~~~~~~~~~~~------~~----   60 (122)
T cd04635           2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKA-----------GELIGIITRRDIIRAGSVRTSVEDQ------QR----   60 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcccEECCC-----------CcEEEEEEcHHHHhhccccccccch------hh----
Confidence            56789999999999999998889999999887           8999999999997532110000000      00    


Q ss_pred             hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262          344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR  423 (447)
Q Consensus       344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr  423 (447)
                      .                   ......++.++|.+++..+.+++++.++++.|.+.+.+.+||+|+     +|+++|+||+
T Consensus        61 ~-------------------~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-----~g~~~Gvit~  116 (122)
T cd04635          61 T-------------------QTKASPTVEKIMSTPVYSVTPDDSIATAVELMLEHDIGRLPVVNE-----KDQLVGIVDR  116 (122)
T ss_pred             h-------------------hhhccCcHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeeeEEcC-----CCcEEEEEEh
Confidence            0                   000122345667788899999999999999999999999999987     5689999999


Q ss_pred             HHHHH
Q 013262          424 QDLRA  428 (447)
Q Consensus       424 ~DLl~  428 (447)
                      +|+++
T Consensus       117 ~dl~~  121 (122)
T cd04635         117 HDVLK  121 (122)
T ss_pred             HHhhc
Confidence            99985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.35  E-value=9e-12  Score=104.20  Aligned_cols=115  Identities=20%  Similarity=0.248  Sum_probs=89.6

Q ss_pred             CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262          264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF  343 (447)
Q Consensus       264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~  343 (447)
                      +++++++++++.++.+.+.+.+.+.+||+|++           ++++|+++.+|+.+.+.... ..        +     
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~-----------~~~~Giv~~~dl~~~~~~~~-~~--------~-----   56 (116)
T cd04643           2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKE-----------GKYVGTISLTDILWKLKGLE-NL--------D-----   56 (116)
T ss_pred             CcEEECCCCcHHHHHHHHHHCCCceeeeECCC-----------CcEEEEEeHHHHHHHhhccC-ch--------h-----
Confidence            57789999999999999998889999999986           89999999999977543210 00        0     


Q ss_pred             hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262          344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR  423 (447)
Q Consensus       344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr  423 (447)
                       ...+                  ....+.++|.+.+.++.+++++.++++.|.+.+  .+||+|+     +++++|+||+
T Consensus        57 -~~~~------------------~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~-----~~~~~Gvit~  110 (116)
T cd04643          57 -LERL------------------VDLKVIDVMNTDVPVIIDDADIEEILHLLIDQP--FLPVVDD-----DGIFIGIITR  110 (116)
T ss_pred             -HHHH------------------hCCcHHHHhcCCCceecCCCCHHHHHHHHhcCC--ceeEEeC-----CCeEEEEEEH
Confidence             0000                  012345667788899999999999999998865  5999987     5689999999


Q ss_pred             HHHHHH
Q 013262          424 QDLRAF  429 (447)
Q Consensus       424 ~DLl~~  429 (447)
                      +|++++
T Consensus       111 ~dil~~  116 (116)
T cd04643         111 REILKA  116 (116)
T ss_pred             HHhhcC
Confidence            999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.35  E-value=1e-11  Score=103.18  Aligned_cols=109  Identities=15%  Similarity=0.226  Sum_probs=89.6

Q ss_pred             CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262          264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF  343 (447)
Q Consensus       264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~  343 (447)
                      ++.+++++.+++++.+.+.+.+++.+||+|++           ++++|+++.+|+..+......                
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-----------~~~~G~v~~~dl~~~~~~~~~----------------   54 (111)
T cd04626           2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNE-----------EKLKGVVTFTDILDLDLFESF----------------   54 (111)
T ss_pred             CceEECCCccHHHHHHHHHHhCCCeEEEEcCC-----------CCEEEEEehHHhHHHHhhccc----------------
Confidence            56788999999999999998899999999886           899999999999764321100                


Q ss_pred             hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262          344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR  423 (447)
Q Consensus       344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr  423 (447)
                                             ....+.++|.+.+.++.+++++.++++.|.+.+.+.+||+|+      |+++|+||+
T Consensus        55 -----------------------~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~------~~~~G~it~  105 (111)
T cd04626          55 -----------------------LEKKVFNIVSQDVFYVNEEDTIDEALDIMREKQIGRLPVVDD------NKLIGVVRT  105 (111)
T ss_pred             -----------------------ccCcHHHHhcCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC------CEEEEEEEh
Confidence                                   001244556778889999999999999999999999999984      579999999


Q ss_pred             HHHHH
Q 013262          424 QDLRA  428 (447)
Q Consensus       424 ~DLl~  428 (447)
                      +|+++
T Consensus       106 ~di~~  110 (111)
T cd04626         106 KDILD  110 (111)
T ss_pred             HHhcc
Confidence            99864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=99.35  E-value=1.4e-11  Score=102.06  Aligned_cols=102  Identities=44%  Similarity=0.692  Sum_probs=85.8

Q ss_pred             CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262          264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF  343 (447)
Q Consensus       264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~  343 (447)
                      .+..+++++++.++.+.+.+.+++.+||+++.        .-+++++|+|+++|+.....+                   
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~--------~~~~~~~G~v~~~dl~~~~~~-------------------   55 (105)
T cd04591           3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDST--------EESPRLVGYILRSQLVVALKN-------------------   55 (105)
T ss_pred             ceEEecccccHHHHHHHHHhCCCCCcceEcCC--------CCCCEEEEEEeHHHHHHHHHH-------------------
Confidence            56788999999999999998888999999871        002899999999998652210                   


Q ss_pred             hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262          344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR  423 (447)
Q Consensus       344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr  423 (447)
                                                    +|.+++.++++++++.+++++|.+.+.+++||+++      |+++|+||+
T Consensus        56 ------------------------------~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~~------~~~~Gvvt~   99 (105)
T cd04591          56 ------------------------------YIDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVDE------GRLVGIITR   99 (105)
T ss_pred             ------------------------------hccCCCceECCCCcHHHHHHHHHHcCCCEEEEEEC------CeEEEEEEh
Confidence                                          45577889999999999999999999999999963      579999999


Q ss_pred             HHHHH
Q 013262          424 QDLRA  428 (447)
Q Consensus       424 ~DLl~  428 (447)
                      +|+++
T Consensus       100 ~dl~~  104 (105)
T cd04591         100 KDLLK  104 (105)
T ss_pred             hhhhc
Confidence            99976

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.34  E-value=1.6e-11  Score=102.71  Aligned_cols=110  Identities=20%  Similarity=0.278  Sum_probs=86.0

Q ss_pred             CeeEecCCCCHHHHHHHHhcCC-CCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhc
Q 013262          264 PVITLSGIEKVSQIVDVLRNTT-HNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREK  342 (447)
Q Consensus       264 ~vv~l~~~~tv~~~~~~L~~~~-~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~  342 (447)
                      ++.+++++.++.++.+.+.+.+ ...+||++ +           ++++|+++..|+...+......              
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~-----------~~~~G~v~~~dl~~~~~~~~~~--------------   55 (115)
T cd04620           2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVE-K-----------GRLLGIFTERDIVRLTAIGKDL--------------   55 (115)
T ss_pred             CCeEeCCCCcHHHHHHHHHhcCCCceEEEcC-C-----------CcEEEEEeHHHHHHHHhcCCCc--------------
Confidence            4567899999999999998777 66677766 4           7899999999997654321100              


Q ss_pred             chHHHHhhhcccccccccchhhhhhccCccccccCCCceecCC--CCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEE
Q 013262          343 FSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIES--MSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGI  420 (447)
Q Consensus       343 ~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~--~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGI  420 (447)
                                              ....+.++|...+.++.++  +++.+++++|.+.+...+||+|+     +|+++|+
T Consensus        56 ------------------------~~~~i~~~~~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~-----~~~~~Gv  106 (115)
T cd04620          56 ------------------------SDLPIGEVMTQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDD-----QGQLIGL  106 (115)
T ss_pred             ------------------------cccCHHHhcCCCcEEEecccccCHHHHHHHHHHhCCceEEEEcC-----CCCEEEE
Confidence                                    0012344566777888887  78999999999999999999987     5689999


Q ss_pred             EeHHHHHH
Q 013262          421 LTRQDLRA  428 (447)
Q Consensus       421 ITr~DLl~  428 (447)
                      ||++|+++
T Consensus       107 it~~dl~~  114 (115)
T cd04620         107 VTAESIRQ  114 (115)
T ss_pred             EEhHHhhc
Confidence            99999976

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=99.34  E-value=5.8e-12  Score=131.07  Aligned_cols=127  Identities=18%  Similarity=0.236  Sum_probs=104.1

Q ss_pred             cccccccccccCCCCeeEecCCCCHHHHHHHHhc-----CCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHh
Q 013262          250 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRN-----TTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK  324 (447)
Q Consensus       250 l~~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~-----~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~  324 (447)
                      +...+|+++|++  ++++++++++++++.+.+++     .+...+||+|++           ++++|+|+.+|+...  .
T Consensus       128 ~~e~tvg~iMt~--~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~-----------~~l~GvV~l~dLl~a--~  192 (449)
T TIGR00400       128 YSDDSAGRIMTI--EYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNES-----------KHLKGVLSIRDLILA--K  192 (449)
T ss_pred             CCcchHHHhCcC--ceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCC-----------CeEEEEEEHHHHhcC--C
Confidence            345789999998  99999999999999999975     234567888876           899999999998531  0


Q ss_pred             hhhhhhcccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEE
Q 013262          325 KWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLL  404 (447)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~Lp  404 (447)
                          +                                      ...++++|+++++++++++++.+|.+.|++++...+|
T Consensus       193 ----~--------------------------------------~~~v~~im~~~~~~v~~~~~~~eal~~m~~~~~~~lp  230 (449)
T TIGR00400       193 ----P--------------------------------------EEILSSIMRSSVFSIVGVNDQEEVARLIQKYDFLAVP  230 (449)
T ss_pred             ----C--------------------------------------CCcHHHHhCCCCeeECCCCCHHHHHHHHHHcCCCEEe
Confidence                0                                      0135567778888999999999999999999999999


Q ss_pred             EEeCcccCCCCcEEEEEeHHHHHHHHHhhhcCcc
Q 013262          405 VVPKYEAAGVSPVVGILTRQDLRAFNILTAFPHL  438 (447)
Q Consensus       405 VVd~~~~~g~~~lvGIITr~DLl~~~~~~~~~~~  438 (447)
                      |||+     +|+++|+||++|+++...++..+..
T Consensus       231 VVD~-----~g~lvGiIt~~Dil~~l~~~~~ed~  259 (449)
T TIGR00400       231 VVDN-----EGRLVGIVTVDDIIDVIQSEATEDF  259 (449)
T ss_pred             EEcC-----CCeEEEEEEHHHHHHHHHhhhHHHH
Confidence            9997     5689999999999998877654433

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.33  E-value=1.5e-11  Score=102.98  Aligned_cols=109  Identities=18%  Similarity=0.322  Sum_probs=86.6

Q ss_pred             CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262          264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF  343 (447)
Q Consensus       264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~  343 (447)
                      ++.++++++++.++.+.|.+.+++.+||+|+.        +++++++|+++.+|+......                   
T Consensus         3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~--------~~~~~~~G~v~~~dl~~~~~~-------------------   55 (114)
T cd04602           3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDG--------KSGGKLLGIVTSRDIDFLTDS-------------------   55 (114)
T ss_pred             CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCC--------CcCCEEEEEEEhHHhhhhhcc-------------------
Confidence            46688999999999999988888899999862        112899999999998531100                   


Q ss_pred             hHHHHhhhcccccccccchhhhhhccCccccccCCCceecC--CCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEE
Q 013262          344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIE--SMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGIL  421 (447)
Q Consensus       344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~--~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGII  421 (447)
                                              ..+++++|...+.++..  ++++.++++.|++.+.+++||+|+     +++++|+|
T Consensus        56 ------------------------~~~v~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~-----~~~~~Gvi  106 (114)
T cd04602          56 ------------------------ETPLSEVMTPREVLVVAPTGITLEEANEILRESKKGKLPIVND-----DGELVALV  106 (114)
T ss_pred             ------------------------CCCHHHhcCCCceEEECCCCCCHHHHHHHHHhcCCCceeEECC-----CCeEEEEE
Confidence                                    01244566666777766  999999999999999999999987     56899999


Q ss_pred             eHHHHHH
Q 013262          422 TRQDLRA  428 (447)
Q Consensus       422 Tr~DLl~  428 (447)
                      |++|+++
T Consensus       107 t~~di~~  113 (114)
T cd04602         107 TRSDLKK  113 (114)
T ss_pred             EHHHhhc
Confidence            9999874

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.32  E-value=1.7e-11  Score=106.53  Aligned_cols=133  Identities=17%  Similarity=0.185  Sum_probs=94.6

Q ss_pred             CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262          264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF  343 (447)
Q Consensus       264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~  343 (447)
                      ++.+++++.++.++++.|.+.+++.+||+|++           ++++|+|+..|+...+.........      .  ...
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~-----------~~~~Giv~~~dl~~~~~~~~~~~~~------~--~~~   62 (135)
T cd04621           2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDN-----------GKPVGVITYRDLAFAEFEDNERGLP------K--KSI   62 (135)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCcceEECCC-----------CCEEEEEeHHHHHHHhhcccccccc------h--hhh
Confidence            56788999999999999998889999999987           8999999999998765421100000      0  000


Q ss_pred             hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262          344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR  423 (447)
Q Consensus       344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr  423 (447)
                      .   +........+..    ......+++++|...+..+.+++++.++++.|.+.+.+++||+++      ++++|+||+
T Consensus        63 ~---~~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~------~~~~Gvit~  129 (135)
T cd04621          63 K---MKRKAGQKRYRY----VKEVPLVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN------DNIVGVITK  129 (135)
T ss_pred             h---hhhhcccccccc----cccccccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC------CEEEEEEEH
Confidence            0   000000000000    000123567788888889999999999999999999999999974      579999999


Q ss_pred             HHHHH
Q 013262          424 QDLRA  428 (447)
Q Consensus       424 ~DLl~  428 (447)
                      .|+++
T Consensus       130 ~di~~  134 (135)
T cd04621         130 TDICR  134 (135)
T ss_pred             HHHhh
Confidence            99976

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.32  E-value=2e-11  Score=102.62  Aligned_cols=120  Identities=25%  Similarity=0.290  Sum_probs=92.8

Q ss_pred             CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262          264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF  343 (447)
Q Consensus       264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~  343 (447)
                      ++.+++++.++.++.+.|.+.+++.+||+|+            ++++|++++.|+...........              
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~------------~~~~G~i~~~~l~~~~~~~~~~~--------------   55 (122)
T cd04585           2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR------------GKLVGIVTDRDLKLASPSKATTL--------------   55 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHhCCcceeeEecC------------CeEEEEEeHHHHHHhhhcccccc--------------
Confidence            5678899999999999999888999999986            68999999999977543211000              


Q ss_pred             hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262          344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR  423 (447)
Q Consensus       344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr  423 (447)
                      ...+..          .    .....++.++|++++.++.+++++.++++.|.+.+.+.+||+++     +|+++|+||+
T Consensus        56 ~~~~~~----------~----~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~~~~~Gvvt~  116 (122)
T cd04585          56 DIWELY----------Y----LLSKIKVSDIMTRDPITVSPDASVEEAAELMLERKISGLPVVDD-----QGRLVGIITE  116 (122)
T ss_pred             cchhhh----------h----hhcccCHHHhccCCCeEeCCCCcHHHHHHHHHHcCCCceeEECC-----CCcEEEEEEH
Confidence            000000          0    00123466778888999999999999999999999999999986     4689999999


Q ss_pred             HHHHH
Q 013262          424 QDLRA  428 (447)
Q Consensus       424 ~DLl~  428 (447)
                      +|+++
T Consensus       117 ~di~~  121 (122)
T cd04585         117 SDLFR  121 (122)
T ss_pred             HHhhh
Confidence            99986

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=99.32  E-value=1.5e-11  Score=128.90  Aligned_cols=116  Identities=13%  Similarity=0.164  Sum_probs=95.6

Q ss_pred             ccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhh
Q 013262          259 IDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWE  338 (447)
Q Consensus       259 M~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~  338 (447)
                      |.+  +++++++++++.++.+.|.+++++.+||+|++        +.+++++|+|+.+|+....   +            
T Consensus       106 mi~--dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~--------~~~GklvGIVT~~DL~~v~---~------------  160 (505)
T PLN02274        106 FVS--DPVVKSPSSTISSLDELKASRGFSSVCVTETG--------TMGSKLLGYVTKRDWDFVN---D------------  160 (505)
T ss_pred             ccC--CCeeeCCCCcHHHHHHHHHhcCCceEEEEeCC--------CcCCeEEEEEEHHHHhhcc---c------------
Confidence            667  88899999999999999999999999999872        0127999999999995321   0            


Q ss_pred             hhhcchHHHHhhhcccccccccchhhhhhccCccccccCC--CceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCc
Q 013262          339 VREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTT--PYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSP  416 (447)
Q Consensus       339 ~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~--p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~  416 (447)
                                                  ...+++++|.+.  .+++.+++++.+++++|.+.+.+.+||||+     +++
T Consensus       161 ----------------------------~~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~-----~g~  207 (505)
T PLN02274        161 ----------------------------RETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNE-----DGE  207 (505)
T ss_pred             ----------------------------cCCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcC-----CCe
Confidence                                        012345566655  679999999999999999999999999987     567


Q ss_pred             EEEEEeHHHHHHHHHh
Q 013262          417 VVGILTRQDLRAFNIL  432 (447)
Q Consensus       417 lvGIITr~DLl~~~~~  432 (447)
                      ++|+||++|+++....
T Consensus       208 LvGvITr~DIlk~~~~  223 (505)
T PLN02274        208 LVDLVTRTDVKRVKGY  223 (505)
T ss_pred             EEEEEEHHHHHHHhhC
Confidence            9999999999987664

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.32  E-value=2.6e-11  Score=100.89  Aligned_cols=111  Identities=23%  Similarity=0.275  Sum_probs=89.3

Q ss_pred             CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262          264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF  343 (447)
Q Consensus       264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~  343 (447)
                      ++.++++++++.++.+.|.+.+++.+||+++            ++++|++++.|+...+.......              
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~------------~~~~G~i~~~~l~~~~~~~~~~~--------------   55 (113)
T cd04622           2 DVVTVSPDDTIREAARLMREHDVGALPVCEN------------DRLVGIVTDRDIVVRAVAEGRDP--------------   55 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC------------CEEEEEEEhHHHHHHHhhccCCc--------------
Confidence            5778999999999999999889999999986            68999999999863211100000              


Q ss_pred             hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262          344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR  423 (447)
Q Consensus       344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr  423 (447)
                                             ...++.++|+..+.++.+++++.++++.|.+.+.+++||+++     .++++|+||+
T Consensus        56 -----------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-----~~~~~G~it~  107 (113)
T cd04622          56 -----------------------DTTTVGDVMTRGVVTVTEDDDVDEAARLMREHQVRRLPVVDD-----DGRLVGIVSL  107 (113)
T ss_pred             -----------------------ccCCHHHhccCCccEECCCCCHHHHHHHHHHcCCCeeeEECC-----CCcEEEEEEH
Confidence                                   011255667788889999999999999999999999999986     4679999999


Q ss_pred             HHHHH
Q 013262          424 QDLRA  428 (447)
Q Consensus       424 ~DLl~  428 (447)
                      +|+++
T Consensus       108 ~di~~  112 (113)
T cd04622         108 GDLAR  112 (113)
T ss_pred             HHhhc
Confidence            99975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK11573 hypothetical protein; Provisional

Probab=99.32  E-value=2.2e-10  Score=117.75  Aligned_cols=135  Identities=13%  Similarity=0.204  Sum_probs=109.4

Q ss_pred             cccccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhh
Q 013262          250 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ  329 (447)
Q Consensus       250 l~~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~  329 (447)
                      +++.+|+|+|+|+.++++++.+.+++++.+.+.+++|+.+||.+++.          +.++|+|..+|++..+.++.   
T Consensus       184 l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~----------D~IiGiv~~kDll~~~~~~~---  250 (413)
T PRK11573        184 LEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSL----------DDAISMLRVREAYRLMTEKK---  250 (413)
T ss_pred             cCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCC----------CceEEEEEHHHHHHHhhccC---
Confidence            67889999999988999999999999999999999999999998652          67999999999976432210   


Q ss_pred             hcccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCc
Q 013262          330 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKY  409 (447)
Q Consensus       330 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~  409 (447)
                                  .....                       ++.+++ ++|..|++++++.++++.|++.+.+...|+|+ 
T Consensus       251 ------------~~~~~-----------------------~l~~~~-r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDE-  293 (413)
T PRK11573        251 ------------EFTKE-----------------------NMLRAA-DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDE-  293 (413)
T ss_pred             ------------cCCHH-----------------------HHHhhc-cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEec-
Confidence                        00000                       122233 57889999999999999999999999999998 


Q ss_pred             ccCCCCcEEEEEeHHHHHHHHHhhhcCcc
Q 013262          410 EAAGVSPVVGILTRQDLRAFNILTAFPHL  438 (447)
Q Consensus       410 ~~~g~~~lvGIITr~DLl~~~~~~~~~~~  438 (447)
                          .|...|+||.+|+++....+...+.
T Consensus       294 ----yG~~~GiVTleDilEeivGei~de~  318 (413)
T PRK11573        294 ----YGDIQGLVTVEDILEEIVGDFTTSM  318 (413)
T ss_pred             ----CCCeEEEeeHHHHHHHHhCCCCccc
Confidence                4569999999999999887665543

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.31  E-value=2.8e-11  Score=100.28  Aligned_cols=109  Identities=21%  Similarity=0.313  Sum_probs=89.5

Q ss_pred             CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262          264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF  343 (447)
Q Consensus       264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~  343 (447)
                      ++.+++++.++.++.+.|.+.+.+.+||+|+            ++++|+++..|+.........                
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~------------~~~~G~v~~~dl~~~~~~~~~----------------   53 (111)
T cd04612           2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD------------GRLVGIVTLADIRRVPAEGRE----------------   53 (111)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC------------CeEEEEEEHHHHHHHHhcCcc----------------
Confidence            5678999999999999999888899999986            689999999999764322100                


Q ss_pred             hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262          344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR  423 (447)
Q Consensus       344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr  423 (447)
                                             ....+.++|.+++.++.+++++.++++.|.+.+.+++||+|+     +++++|+||+
T Consensus        54 -----------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-----~~~~~G~it~  105 (111)
T cd04612          54 -----------------------ATVLVGDVMTRDPVTASPDETLRDALKRMAERDIGRLPVVDD-----SGRLVGIVSR  105 (111)
T ss_pred             -----------------------cccCHHHhccCCCeEECCCCCHHHHHHHHHhCCCCeeeEEcC-----CCCEEEEEEH
Confidence                                   001233456678899999999999999999999999999986     5679999999


Q ss_pred             HHHHH
Q 013262          424 QDLRA  428 (447)
Q Consensus       424 ~DLl~  428 (447)
                      +|+++
T Consensus       106 ~di~~  110 (111)
T cd04612         106 SDLLR  110 (111)
T ss_pred             HHhhh
Confidence            99975

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=99.31  E-value=3.3e-11  Score=99.82  Aligned_cols=109  Identities=20%  Similarity=0.293  Sum_probs=89.8

Q ss_pred             CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262          264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF  343 (447)
Q Consensus       264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~  343 (447)
                      ++.++++++++.++.+.|.+.+++.+||+++            ++++|+++.+|+.+......-                
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~------------~~~~G~v~~~~l~~~~~~~~~----------------   53 (111)
T cd04611           2 QILTCPPDTSLAEAASRMRERRISSIVVVDD------------GRPLGIVTERDILRLLASGPD----------------   53 (111)
T ss_pred             CceEECCCCcHHHHHHHHHHcCCCEEEEeeC------------CEEEEEEeHHHHHHHHhcCCC----------------
Confidence            4668899999999999999888889999876            689999999999765432110                


Q ss_pred             hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262          344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR  423 (447)
Q Consensus       344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr  423 (447)
                                             ....+.++|.+.+.++++++++.++++.|.+.+.+.+||+|+     +|+++|+||+
T Consensus        54 -----------------------~~~~v~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~-----~~~~~Gvi~~  105 (111)
T cd04611          54 -----------------------LQTPVGEVMSSPLLTVPADTSLYDARQLMREHGIRHLVVVDD-----DGELLGLLSQ  105 (111)
T ss_pred             -----------------------CCcCHHHhcCCCceEECCCCCHHHHHHHHHHcCCeEEEEECC-----CCcEEEEEEh
Confidence                                   012244567778889999999999999999999999999987     4679999999


Q ss_pred             HHHHH
Q 013262          424 QDLRA  428 (447)
Q Consensus       424 ~DLl~  428 (447)
                      +|+++
T Consensus       106 ~di~~  110 (111)
T cd04611         106 TDLLQ  110 (111)
T ss_pred             HHhhc
Confidence            99975

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=99.31  E-value=1.5e-11  Score=119.36  Aligned_cols=114  Identities=17%  Similarity=0.212  Sum_probs=96.1

Q ss_pred             cccccccccCCCC-eeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhh
Q 013262          252 TLTVGELIDAKPP-VITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQE  330 (447)
Q Consensus       252 ~l~v~diM~~~~~-vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~  330 (447)
                      .++|+|+|.+  + +.++++++++.++.+.|.+.+++.+||+|++           ++++|+|+.+|+.+.+....    
T Consensus       154 ~~~v~~im~~--~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~-----------g~~~Givt~~dl~~~~~~~~----  216 (268)
T TIGR00393       154 LVKVKDLMQT--TDLPLIAPTTSFKDALLEMSEKRLGSAIVCDEN-----------NQLVGVFTDGDLRRALLGGG----  216 (268)
T ss_pred             hhhHHHHhCC--CCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCC-----------CCEEEEEEcHHHHHHHhcCC----
Confidence            4789999998  7 8899999999999999998889999999987           89999999999976442210    


Q ss_pred             cccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcc
Q 013262          331 KRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYE  410 (447)
Q Consensus       331 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~  410 (447)
                                                         ....+++++|.+.+.++.+++++.+|+++|.+.+.+.+||+|+  
T Consensus       217 -----------------------------------~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--  259 (268)
T TIGR00393       217 -----------------------------------SLKSEVRDFMTLGPKTFKLDALLLEALEFLERRKITSLVVVDD--  259 (268)
T ss_pred             -----------------------------------cccCcHHHhCCCCCeEECCCCcHHHHHHHHHHcCCcEEEEECC--
Confidence                                               0012355677788889999999999999999999999999987  


Q ss_pred             cCCCCcEEEEEe
Q 013262          411 AAGVSPVVGILT  422 (447)
Q Consensus       411 ~~g~~~lvGIIT  422 (447)
                         +|+++|+|+
T Consensus       260 ---~g~l~GvI~  268 (268)
T TIGR00393       260 ---HNKVLGVLH  268 (268)
T ss_pred             ---CCeEEEEEC
Confidence               568999985

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=99.31  E-value=1.3e-11  Score=128.25  Aligned_cols=122  Identities=20%  Similarity=0.214  Sum_probs=103.2

Q ss_pred             ccccccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhh
Q 013262          249 WMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFL  328 (447)
Q Consensus       249 ~l~~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~  328 (447)
                      .++.+++.++|.+  +++++++++++.++.+.|.+.+++.+||+|+            ++++|+|+.+|+...       
T Consensus        84 ~v~~VKv~eim~~--~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~------------gklvGIVT~rDL~~~-------  142 (475)
T TIGR01303        84 TVAFVKSRDLVLD--TPITLAPHDTVSDAMALIHKRAHGAAVVILE------------DRPVGLVTDSDLLGV-------  142 (475)
T ss_pred             HHhhcchhhcccc--CCeEECCCCCHHHHHHHHHhcCCeEEEEEEC------------CEEEEEEEHHHhhcC-------
Confidence            3567888899998  8899999999999999999988888888875            689999999998320       


Q ss_pred             hhcccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeC
Q 013262          329 QEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPK  408 (447)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~  408 (447)
                      .                                     ...+++++|+++++++++++++.+|+++|.+.+.+++||+|+
T Consensus       143 ~-------------------------------------~~~~V~dIMt~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~  185 (475)
T TIGR01303       143 D-------------------------------------RFTQVRDIMSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVDA  185 (475)
T ss_pred             C-------------------------------------CCCCHHHHccCCceEeCCCCcHHHHHHHHHHcCCCEEEEEcC
Confidence            0                                     001355678889999999999999999999999999999987


Q ss_pred             cccCCCCcEEEEEeHHHHHHHHHhh
Q 013262          409 YEAAGVSPVVGILTRQDLRAFNILT  433 (447)
Q Consensus       409 ~~~~g~~~lvGIITr~DLl~~~~~~  433 (447)
                           +++++|+||++||++.....
T Consensus       186 -----~g~LvGIIT~~DLl~~~~~~  205 (475)
T TIGR01303       186 -----DGTLAGILTRTGALRATIYT  205 (475)
T ss_pred             -----CCeEEEEEEHHHHHHHHhCC
Confidence                 56799999999999876644

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.31  E-value=2.8e-11  Score=102.31  Aligned_cols=121  Identities=21%  Similarity=0.321  Sum_probs=93.1

Q ss_pred             CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262          264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF  343 (447)
Q Consensus       264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~  343 (447)
                      ++.++++++++.++.+.+.+.+++++||+|+            ++++|+++..++.+.+... +....   +  .     
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~------------~~~~G~v~~~~l~~~~~~~-~~~~~---~--~-----   58 (122)
T cd04637           2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED------------NELVGVISDRDYLKAISPF-LGTAG---E--T-----   58 (122)
T ss_pred             CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC------------CeEEEEEEHHHHHHHHHHH-hcccc---c--h-----
Confidence            5678999999999999999889999999985            6899999999998755421 00000   0  0     


Q ss_pred             hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262          344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR  423 (447)
Q Consensus       344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr  423 (447)
                       ..++.                ....++.++|.++++.+.+++++.++++.|.+.+.+.+||+|+     +++++|++|+
T Consensus        59 -~~~~~----------------~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~-----~~~~~Gvit~  116 (122)
T cd04637          59 -EKDLA----------------TLNRRAHQIMTRDPITVSPDTPVDEASKLLLENSISCLPVVDE-----NGQLIGIITW  116 (122)
T ss_pred             -HHHHH----------------HHHhHHHHhhcCCCeeeCCCCcHHHHHHHHHHcCCCeEeEECC-----CCCEEEEEEH
Confidence             00000                0012356677788999999999999999999999999999986     5689999999


Q ss_pred             HHHHHH
Q 013262          424 QDLRAF  429 (447)
Q Consensus       424 ~DLl~~  429 (447)
                      +|++++
T Consensus       117 ~dll~~  122 (122)
T cd04637         117 KDLLKY  122 (122)
T ss_pred             HHhhhC
Confidence            999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.31  E-value=1.9e-11  Score=104.40  Aligned_cols=118  Identities=15%  Similarity=0.211  Sum_probs=86.1

Q ss_pred             CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262          264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF  343 (447)
Q Consensus       264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~  343 (447)
                      ++.++++++++.++++.|.+.+.+.+||+|++           ++++|+++..|+......+.......           
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~-----------~~~~Giv~~~dl~~~~~~~~~~~~~~-----------   59 (126)
T cd04640           2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSD-----------DNFIGVITAVDLLGEEPIKRIQEGGI-----------   59 (126)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCC-----------CcEEEEEEHHHHhhChhhHHHHHcCC-----------
Confidence            46788999999999999988888899999986           89999999999975211000000000           


Q ss_pred             hHHHHhhhcccccccccchhhhhhccCccccccCCCcee------cCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcE
Q 013262          344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTV------IESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPV  417 (447)
Q Consensus       344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV------~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~l  417 (447)
                                           .....+++++|++.+..+      .+++++.++++.|.+.+.+++||+|+   + .|++
T Consensus        60 ---------------------~~~~~~v~~im~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~---~-~~~~  114 (126)
T cd04640          60 ---------------------SRSELTVADVMTPKEDLKALDLEELENASVGDVVETLKASGRQHALVVDR---E-HHQI  114 (126)
T ss_pred             ---------------------CchheEHHHhcCchhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEEC---C-CCEE
Confidence                                 000122445665554333      37899999999999999999999997   2 2579


Q ss_pred             EEEEeHHHHHH
Q 013262          418 VGILTRQDLRA  428 (447)
Q Consensus       418 vGIITr~DLl~  428 (447)
                      +|+||+.|+++
T Consensus       115 ~G~it~~di~~  125 (126)
T cd04640         115 RGIISTSDIAR  125 (126)
T ss_pred             EEEEeHHHHhh
Confidence            99999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=99.31  E-value=3.9e-11  Score=99.58  Aligned_cols=109  Identities=22%  Similarity=0.364  Sum_probs=87.9

Q ss_pred             CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262          264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF  343 (447)
Q Consensus       264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~  343 (447)
                      ++.+++++.++.++.+.|.+.+++.+||++++          +++++|+++..++.+...... .             . 
T Consensus         2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~----------~~~~~G~v~~~~l~~~~~~~~-~-------------~-   56 (111)
T cd04590           2 DIVALDADDTLEEILELIAESGHSRFPVYDGD----------LDNIIGVVHVKDLLRALAEGE-E-------------D-   56 (111)
T ss_pred             ceEEEcCCCCHHHHHHHHhhCCCceEEEECCC----------CceEEEEEEHHHHHHHHHcCC-C-------------c-
Confidence            57789999999999999998888999999863          168999999999987543211 0             0 


Q ss_pred             hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262          344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR  423 (447)
Q Consensus       344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr  423 (447)
                                               ..+..+| ..+.++.+++++.++++.|.+.+.+++||+|+     +++++|+||+
T Consensus        57 -------------------------~~~~~~~-~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~~~~~Gvit~  105 (111)
T cd04590          57 -------------------------LDLRDLL-RPPLFVPESTPLDDLLEEMRKERSHMAIVVDE-----YGGTAGLVTL  105 (111)
T ss_pred             -------------------------CCHHHHh-cCCeecCCCCcHHHHHHHHHhcCCcEEEEEEC-----CCCEEEEeEH
Confidence                                     0122233 35678999999999999999999999999987     5679999999


Q ss_pred             HHHHH
Q 013262          424 QDLRA  428 (447)
Q Consensus       424 ~DLl~  428 (447)
                      +|+++
T Consensus       106 ~di~~  110 (111)
T cd04590         106 EDILE  110 (111)
T ss_pred             HHhhc
Confidence            99975

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.30  E-value=3.3e-11  Score=100.02  Aligned_cols=109  Identities=20%  Similarity=0.308  Sum_probs=89.0

Q ss_pred             CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262          264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF  343 (447)
Q Consensus       264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~  343 (447)
                      ++.+++++.+++++.+.+.+.+++.+||+|+            ++++|+|+..++...+......               
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~------------~~~~G~v~~~~l~~~~~~~~~~---------------   54 (111)
T cd04800           2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD------------GRLVGIVTDRDLRNRVVAEGLD---------------   54 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEEEC------------CEEEEEEEhHHHHHHHhccCCC---------------
Confidence            5678999999999999998888899999986            6899999999997643221000               


Q ss_pred             hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262          344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR  423 (447)
Q Consensus       344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr  423 (447)
                                             ...++.++|...+.++++++++.++++.|.+.+.+++||+++      ++++|+||+
T Consensus        55 -----------------------~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~------~~~~Giit~  105 (111)
T cd04800          55 -----------------------PDTPVSEVMTAPPITIPPDATVFEALLLMLERGIHHLPVVDD------GRLVGVISA  105 (111)
T ss_pred             -----------------------ccCCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCeeeEeEC------CEEEEEEEH
Confidence                                   012344566788899999999999999999999999999984      579999999


Q ss_pred             HHHHH
Q 013262          424 QDLRA  428 (447)
Q Consensus       424 ~DLl~  428 (447)
                      +|+++
T Consensus       106 ~di~~  110 (111)
T cd04800         106 TDLLR  110 (111)
T ss_pred             HHhhc
Confidence            99974

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.30  E-value=4e-11  Score=99.72  Aligned_cols=110  Identities=18%  Similarity=0.268  Sum_probs=86.3

Q ss_pred             CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262          264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF  343 (447)
Q Consensus       264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~  343 (447)
                      ++.+++++.++.++.+.+.+.+...++|.+ +           ++++|+++.+|+.+.+....  .+        .    
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~-~-----------~~~~G~v~~~dl~~~~~~~~--~~--------~----   55 (112)
T cd04625           2 TIYTVAPETLLSEAVATMAEQDLGSLVVME-R-----------GELVGLLTFREVLQAMAQHG--AG--------V----   55 (112)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCeEEEee-C-----------CEEEEEEEHHHHHHHHHhcC--Cc--------h----
Confidence            567899999999999999877776676654 3           79999999999976543210  00        0    


Q ss_pred             hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262          344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR  423 (447)
Q Consensus       344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr  423 (447)
                                             ....+.++|+..+.++.+++++.+++++|.+.+.+.+||+++      ++++|+||+
T Consensus        56 -----------------------~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~~------~~~~Gvvt~  106 (112)
T cd04625          56 -----------------------LDTTVRAIMNPEPIVASPDDSIDEVRRLMVERHLRYLPVLDG------GTLLGVISF  106 (112)
T ss_pred             -----------------------hcCCHHHHhCCCCeEECCCCCHHHHHHHHHHcCCCeeeEEEC------CEEEEEEEH
Confidence                                   011244566677889999999999999999999999999974      579999999


Q ss_pred             HHHHH
Q 013262          424 QDLRA  428 (447)
Q Consensus       424 ~DLl~  428 (447)
                      +|+++
T Consensus       107 ~dl~~  111 (112)
T cd04625         107 HDVAK  111 (112)
T ss_pred             HHhhc
Confidence            99975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.30  E-value=2.7e-11  Score=100.80  Aligned_cols=111  Identities=23%  Similarity=0.269  Sum_probs=89.2

Q ss_pred             CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262          264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF  343 (447)
Q Consensus       264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~  343 (447)
                      ++.+++++.+++++.+.|.+.+.+.+||+++            ++++|+|+..|+...+.......              
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~------------~~~~G~v~~~dl~~~~~~~~~~~--------------   55 (113)
T cd04587           2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG------------NKLVGIFTSKDIALRVVAQGLDP--------------   55 (113)
T ss_pred             CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC------------CEEEEEEEhHHHHHHHHhcCCCc--------------
Confidence            5678899999999999998888889999985            68999999999974332110000              


Q ss_pred             hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262          344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR  423 (447)
Q Consensus       344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr  423 (447)
                                             ...++.++|++.+.++.+++++.++++.|.+.+.+++||+++     +++++|+||+
T Consensus        56 -----------------------~~~~v~~i~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-----~~~~~Gvvs~  107 (113)
T cd04587          56 -----------------------ESTLVERVMTPNPVCATSDTPVLEALHLMVQGKFRHLPVVDK-----SGQVVGLLDV  107 (113)
T ss_pred             -----------------------CcCCHHHhcCCCCeEEcCCCCHHHHHHHHHHcCCCcccEECC-----CCCEEEEEEH
Confidence                                   002345567788889999999999999999999999999987     4679999999


Q ss_pred             HHHHH
Q 013262          424 QDLRA  428 (447)
Q Consensus       424 ~DLl~  428 (447)
                      +|++.
T Consensus       108 ~dl~~  112 (113)
T cd04587         108 TKLTH  112 (113)
T ss_pred             HHhcc
Confidence            99975

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.30  E-value=1.8e-11  Score=101.20  Aligned_cols=106  Identities=19%  Similarity=0.314  Sum_probs=86.8

Q ss_pred             CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262          264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF  343 (447)
Q Consensus       264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~  343 (447)
                      ++.+++++.++.++.+.+.+.+++.+||+|++           ++++|+++.+++.....                    
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~-----------~~~~G~v~~~~l~~~~~--------------------   51 (110)
T cd04601           3 DPITVSPDATVAEALELMAEYGISGLPVVDDD-----------GKLVGIVTNRDLRFETD--------------------   51 (110)
T ss_pred             CCeEeCCCCcHHHHHHHHHHcCCceEEEEcCC-----------CEEEEEEEhhHeeeccc--------------------
Confidence            56788999999999999988889999999986           89999999998843100                    


Q ss_pred             hHHHHhhhcccccccccchhhhhhccCccccccCCCceecC-CCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEe
Q 013262          344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIE-SMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILT  422 (447)
Q Consensus       344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~-~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIIT  422 (447)
                                             ....+.++|+..+..+.+ ++++.++++.|.+.+.+.+||+|+     +++++|+||
T Consensus        52 -----------------------~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~~~~~Gvi~  103 (110)
T cd04601          52 -----------------------LDKPVSEVMTPENLLTTVEGTSLEEALELLHEHKIEKLPVVDD-----EGKLKGLIT  103 (110)
T ss_pred             -----------------------CCCCHHHhcccCceEEecCCCCHHHHHHHHHHhCCCeeeEEcC-----CCCEEEEEE
Confidence                                   001234456666677777 999999999999999999999987     467999999


Q ss_pred             HHHHHH
Q 013262          423 RQDLRA  428 (447)
Q Consensus       423 r~DLl~  428 (447)
                      ++|+++
T Consensus       104 ~~dil~  109 (110)
T cd04601         104 VKDIEK  109 (110)
T ss_pred             hhhhhc
Confidence            999975

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.29  E-value=4.4e-11  Score=99.39  Aligned_cols=109  Identities=17%  Similarity=0.234  Sum_probs=88.4

Q ss_pred             CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262          264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF  343 (447)
Q Consensus       264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~  343 (447)
                      ++++++++++++++.+.|.+.+++.+||+|+            ++++|+++.+++...+......               
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~------------~~~~G~v~~~~l~~~~~~~~~~---------------   54 (111)
T cd04589           2 PPLIVDASTSIRDAARLMREHGADALLVRDG------------DPRLGIVTRTDLLDAVLLDGLP---------------   54 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEecC------------CeEEEEEEHHHHHHHHHcCCCC---------------
Confidence            4568899999999999998888889999886            5799999999997654321100               


Q ss_pred             hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262          344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR  423 (447)
Q Consensus       344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr  423 (447)
                                             ...++.++|++++..+++++++.++++.|.+.+.+.+||+|+      ++++|+||+
T Consensus        55 -----------------------~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~------~~~~G~it~  105 (111)
T cd04589          55 -----------------------SSTPVGEIATFPLITVDPDDFLFNALLLMTRHRIHRVVVREG------GEVVGVLEQ  105 (111)
T ss_pred             -----------------------CCCCHHHHhCCCcEEECCCCcHHHHHHHHHHhCccEEEEeeC------CEEEEEEEh
Confidence                                   012344567778889999999999999999999999999974      579999999


Q ss_pred             HHHHH
Q 013262          424 QDLRA  428 (447)
Q Consensus       424 ~DLl~  428 (447)
                      +|+++
T Consensus       106 ~dl~~  110 (111)
T cd04589         106 TDLLS  110 (111)
T ss_pred             HHhhc
Confidence            99975

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=99.29  E-value=2.4e-11  Score=127.52  Aligned_cols=117  Identities=17%  Similarity=0.254  Sum_probs=100.1

Q ss_pred             cccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhccc
Q 013262          254 TVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRR  333 (447)
Q Consensus       254 ~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~  333 (447)
                      .++++|.+  +++++++++++.++.+.|.+++++.+||+|++           ++++|+|+.+|+.....          
T Consensus        88 ~~~dim~~--~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~-----------g~lvGiVt~~DL~~~~~----------  144 (486)
T PRK05567         88 RSESGVVT--DPVTVTPDTTLAEALALMARYGISGVPVVDEN-----------GKLVGIITNRDVRFETD----------  144 (486)
T ss_pred             hhhhcccC--CCeEeCCCCCHHHHHHHHHHhCCCEEEEEccC-----------CEEEEEEEHHHhhhccc----------
Confidence            57889998  99999999999999999999999999999987           89999999999853110          


Q ss_pred             chhhhhhhcchHHHHhhhcccccccccchhhhhhccCcccccc-CCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccC
Q 013262          334 TEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTN-TTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAA  412 (447)
Q Consensus       334 ~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~-~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~  412 (447)
                                                       ...++.++|. ++++++.+++++.++++.|.+.+.+.+||+|+    
T Consensus       145 ---------------------------------~~~~V~dim~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe----  187 (486)
T PRK05567        145 ---------------------------------LSQPVSEVMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDD----  187 (486)
T ss_pred             ---------------------------------CCCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC----
Confidence                                             0012445666 67889999999999999999999999999998    


Q ss_pred             CCCcEEEEEeHHHHHHHHH
Q 013262          413 GVSPVVGILTRQDLRAFNI  431 (447)
Q Consensus       413 g~~~lvGIITr~DLl~~~~  431 (447)
                       +++++|+||++|+++...
T Consensus       188 -~g~lvGiIT~~DLl~~~~  205 (486)
T PRK05567        188 -NGRLKGLITVKDIEKAEE  205 (486)
T ss_pred             -CCcEEEEEEhHHhhhhhh
Confidence             568999999999998753

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=99.29  E-value=1.6e-11  Score=128.54  Aligned_cols=120  Identities=14%  Similarity=0.185  Sum_probs=98.9

Q ss_pred             cccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhccc
Q 013262          254 TVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRR  333 (447)
Q Consensus       254 ~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~  333 (447)
                      ++++.|..  +++++++++++.++.+++++.+++.+||+|++        ..+++++|+|+.+|+...  .     +   
T Consensus        97 ~~e~g~i~--dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~--------~~~gkLvGIVt~~DL~~~--~-----~---  156 (495)
T PTZ00314         97 RFENGFIM--DPYVLSPNHTVADVLEIKEKKGFSSILITVDG--------KVGGKLLGIVTSRDIDFV--K-----D---  156 (495)
T ss_pred             cccccccc--CCeecCCCCCHHHHHHHHHHcCCcEEEEEeCC--------ccCCeEEEEEEHHHHhhc--c-----c---
Confidence            36678888  88999999999999999999999999999873        113799999999998521  0     0   


Q ss_pred             chhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccC--CCceecCCCCHHHHHHHHHHcCCCEEEEEeCccc
Q 013262          334 TEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNT--TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEA  411 (447)
Q Consensus       334 ~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~--~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~  411 (447)
                                                       ...+++++|.+  +++++++++++.+++++|.+.+.+.+||+|+   
T Consensus       157 ---------------------------------~~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~---  200 (495)
T PTZ00314        157 ---------------------------------KSTPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVND---  200 (495)
T ss_pred             ---------------------------------CCCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcC---
Confidence                                             01235566766  7889999999999999999999999999997   


Q ss_pred             CCCCcEEEEEeHHHHHHHHH
Q 013262          412 AGVSPVVGILTRQDLRAFNI  431 (447)
Q Consensus       412 ~g~~~lvGIITr~DLl~~~~  431 (447)
                        +++++|+||++|+++...
T Consensus       201 --~g~liGIIT~~DIl~~~~  218 (495)
T PTZ00314        201 --NGELVALVSRSDLKKNRG  218 (495)
T ss_pred             --CCcEEEEEEehHhhhccc
Confidence              567999999999998643

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=99.29  E-value=2.2e-11  Score=126.64  Aligned_cols=120  Identities=19%  Similarity=0.323  Sum_probs=100.1

Q ss_pred             ccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcc
Q 013262          253 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKR  332 (447)
Q Consensus       253 l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~  332 (447)
                      .+.++.|.+  +++++++++++.++++.+.+++++.+||+|++        ...++++|+|+.+||.....         
T Consensus        80 k~~~~~~~~--~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~--------~~~~~lvGIVt~rDL~~~~~---------  140 (450)
T TIGR01302        80 KRAENGIIS--DPVTISPETTVADVLELMERKGISGIPVVEDG--------DMTGKLVGIITKRDIRFVKD---------  140 (450)
T ss_pred             ccccCceec--CceEeCCCCCHHHHHHHHHHcCCCEEEEEeCC--------CCCCeEEEEEEHHHHhhhhc---------
Confidence            456888988  89999999999999999999999999999874        11158999999999953110         


Q ss_pred             cchhhhhhhcchHHHHhhhcccccccccchhhhhhccCcccccc-CCCceecCCCCHHHHHHHHHHcCCCEEEEEeCccc
Q 013262          333 RTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTN-TTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEA  411 (447)
Q Consensus       333 ~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~-~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~  411 (447)
                                                        ...+++++|+ .+++++++++++.+++++|.+.+.+.+||+|+   
T Consensus       141 ----------------------------------~~~~V~dvm~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe---  183 (450)
T TIGR01302       141 ----------------------------------KGKPVSEVMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDK---  183 (450)
T ss_pred             ----------------------------------CCCCHHHhhCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcC---
Confidence                                              0113455676 48899999999999999999999999999998   


Q ss_pred             CCCCcEEEEEeHHHHHHHH
Q 013262          412 AGVSPVVGILTRQDLRAFN  430 (447)
Q Consensus       412 ~g~~~lvGIITr~DLl~~~  430 (447)
                        +++++|+||++|+++..
T Consensus       184 --~G~lvGiVT~~DIl~~~  200 (450)
T TIGR01302       184 --NGELVGLITMKDIVKRR  200 (450)
T ss_pred             --CCcEEEEEEhHHhhhcc
Confidence              56799999999999875

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd00400 Voltage_gated_ClC CLC voltage-gated chloride channel

Probab=99.28  E-value=2.9e-11  Score=123.57  Aligned_cols=100  Identities=19%  Similarity=0.241  Sum_probs=90.9

Q ss_pred             HHHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHhhhchhHHHHHHHHHhhcC
Q 013262          125 FFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNN  204 (447)
Q Consensus       125 ~~~~k~~~~~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~~~~~~a~~G~aa~~~g~~~~p~s~~vi~~E~t~~  204 (447)
                      ..+.|++++.+|+|+|.|+|.++|++.+||++|..+++.++. ...+...+..+||||.+++++++|++++++.+|+++.
T Consensus        84 ~~~~k~l~~~l~~~~G~s~G~egP~v~iGa~~g~~~~~~~~~-~~~~~~~l~~~G~aaglaa~f~aPl~g~lf~~E~~~~  162 (383)
T cd00400          84 VALVKFLASALTLGSGGSVGREGPIVQIGAAIGSWLGRRLRL-SRNDRRILVACGAAAGIAAAFNAPLAGALFAIEVLLG  162 (383)
T ss_pred             HHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Confidence            456899999999999999999999999999999999998763 2245668999999999999999999999999999987


Q ss_pred             Cc---hHHHHHHHHHHHHHHHhhc
Q 013262          205 LL---LLPITMIVLLIAKTVGDSF  225 (447)
Q Consensus       205 ~~---~~~p~~ia~~va~~v~~~l  225 (447)
                      ..   .+.|.++++++|+.+++.+
T Consensus       163 ~~~~~~~~~~~~~~~~a~~v~~~~  186 (383)
T cd00400         163 EYSVASLIPVLLASVAAALVSRLL  186 (383)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHH
Confidence            66   7899999999999999987

The ClC chloride channels catalyse the selective flow of Cl- ions across cell membranes, thereby regulating electrical excitation in skeletal muscle and the flow of salt and water across epithelial barriers. This domain is found in the halogen ions (Cl-, Br- and I-) transport proteins of the ClC family. The ClC channels are found in all three kingdoms of life and perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, transepithelial transport in animals, and the extreme acid resistance response in eubacteria. They lack any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. Unlike cation-selective ion channels, which form oligomers containing a single pore along the axis of symmetry, the ClC channels form two-pore

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.28  E-value=6.9e-11  Score=98.27  Aligned_cols=110  Identities=22%  Similarity=0.279  Sum_probs=88.9

Q ss_pred             CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262          264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF  343 (447)
Q Consensus       264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~  343 (447)
                      ++.+++++.++.++.+.+.+.+++.+||+++            ++++|+++..|+...+.......              
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~------------~~~~G~v~~~dl~~~~~~~~~~~--------------   55 (112)
T cd04802           2 NVITVDPDTTVYEAANIMTENNIGRLIVVDN------------EKPVGIITERDLVKKVVSRNLKP--------------   55 (112)
T ss_pred             CcEEECCCCCHHHHHHHHHHCCCCEEEEEEC------------CEEEEEEEHHHHHHHHhhccCCc--------------
Confidence            5678899999999999999888999999986            58999999999987443210000              


Q ss_pred             hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262          344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR  423 (447)
Q Consensus       344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr  423 (447)
                                             ....+.++|++.+.++.+++++.++++.|.+.+.+.+||+|+     + +++|+||+
T Consensus        56 -----------------------~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~-~~~Gvi~~  106 (112)
T cd04802          56 -----------------------REVPVGEVMSTPLITIDPNASLNEAAKLMAKHGIKRLPVVDD-----D-ELVGIVTT  106 (112)
T ss_pred             -----------------------ccCCHHHhcCCCcEEECCCCCHHHHHHHHHHcCCCeeEEeeC-----C-EEEEEEEh
Confidence                                   011244566678889999999999999999999999999986     3 79999999


Q ss_pred             HHHHH
Q 013262          424 QDLRA  428 (447)
Q Consensus       424 ~DLl~  428 (447)
                      +|+++
T Consensus       107 ~di~~  111 (112)
T cd04802         107 TDIVM  111 (112)
T ss_pred             hhhhc
Confidence            99974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.27  E-value=4.5e-11  Score=98.08  Aligned_cols=103  Identities=19%  Similarity=0.284  Sum_probs=86.3

Q ss_pred             CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262          264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF  343 (447)
Q Consensus       264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~  343 (447)
                      ++.++++++++.++.+.|.+.+++.+||+| +           ++++|+++.+++.....                    
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d-~-----------~~~~Giv~~~~l~~~~~--------------------   49 (105)
T cd04599           2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE-D-----------GKLVGIITSRDVRRAHP--------------------   49 (105)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEEE-C-----------CEEEEEEehHHhhcccc--------------------
Confidence            567789999999999999888889999997 4           79999999999864210                    


Q ss_pred             hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262          344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR  423 (447)
Q Consensus       344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr  423 (447)
                                              ...+.++|++.+.++++++++.++++.|.+.+.+++||+|+      ++++|+||+
T Consensus        50 ------------------------~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~------~~~~G~it~   99 (105)
T cd04599          50 ------------------------NRLVADAMTREVVTISPEASLLEAKRLMEEKKIERLPVLRE------RKLVGIITK   99 (105)
T ss_pred             ------------------------cCCHHHHccCCCEEECCCCCHHHHHHHHHHcCCCEeeEEEC------CEEEEEEEH
Confidence                                    01234456778899999999999999999999999999984      679999999


Q ss_pred             HHHHH
Q 013262          424 QDLRA  428 (447)
Q Consensus       424 ~DLl~  428 (447)
                      +|++.
T Consensus       100 ~~l~~  104 (105)
T cd04599         100 GTIAL  104 (105)
T ss_pred             HHhcc
Confidence            99873

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.27  E-value=7.9e-11  Score=96.71  Aligned_cols=111  Identities=26%  Similarity=0.378  Sum_probs=90.9

Q ss_pred             CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262          264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF  343 (447)
Q Consensus       264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~  343 (447)
                      ++.+++++.++.++.+.+.+.+++.+||++++           ++++|+++++|+...+.......              
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-----------~~~~G~v~~~~l~~~~~~~~~~~--------------   56 (113)
T cd02205           2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDD-----------GRLVGIVTERDLLRALAEGGLDP--------------   56 (113)
T ss_pred             CceEecCCCCHHHHHHHHHhcCCceEEEECCC-----------CCEEEEEeHHHHHHHHHhccCCc--------------
Confidence            56788999999999999998888999999986           89999999999977553311000              


Q ss_pred             hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262          344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR  423 (447)
Q Consensus       344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr  423 (447)
                                              ...+.++|..++.++.+++++.++++.|.+.+..++||+|+     +++++|+|++
T Consensus        57 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-----~~~~~G~i~~  107 (113)
T cd02205          57 ------------------------LVTVGDVMTRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDD-----EGRLVGIVTR  107 (113)
T ss_pred             ------------------------cccHHHHhcCCceecCCCcCHHHHHHHHHHcCCCEEEEEcC-----CCcEEEEEEH
Confidence                                    00133456678889999999999999999999999999987     5789999999


Q ss_pred             HHHHH
Q 013262          424 QDLRA  428 (447)
Q Consensus       424 ~DLl~  428 (447)
                      +|+++
T Consensus       108 ~dl~~  112 (113)
T cd02205         108 SDILR  112 (113)
T ss_pred             HHhhc
Confidence            99975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=99.26  E-value=4.1e-11  Score=99.41  Aligned_cols=102  Identities=24%  Similarity=0.256  Sum_probs=83.3

Q ss_pred             ecCCCCHHHHHHHHhcCC-----CCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhc
Q 013262          268 LSGIEKVSQIVDVLRNTT-----HNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREK  342 (447)
Q Consensus       268 l~~~~tv~~~~~~L~~~~-----~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~  342 (447)
                      +.+++++.++++.|.+++     +..+||+|++           ++++|+|+.+++...   .   .             
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~-----------~~~~G~v~~~~l~~~---~---~-------------   51 (109)
T cd04606           2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEE-----------GRLLGVVSLRDLLLA---D---P-------------   51 (109)
T ss_pred             ccccCcHHHHHHHHHhccCcccceeEEEEECCC-----------CCEEEEEEHHHHhcC---C---C-------------
Confidence            567889999999998766     3679999876           899999999888531   0   0             


Q ss_pred             chHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEe
Q 013262          343 FSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILT  422 (447)
Q Consensus       343 ~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIIT  422 (447)
                                               ..++.++|+.++..+.+++++.++++.|.+.+.+++||+|+     +++++|+||
T Consensus        52 -------------------------~~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~-----~~~~~Gvit  101 (109)
T cd04606          52 -------------------------DTPVSDIMDTDVISVSADDDQEEVARLFEKYDLLALPVVDE-----EGRLVGIIT  101 (109)
T ss_pred             -------------------------cchHHHHhCCCCeEEcCCCCHHHHHHHHHHcCCceeeeECC-----CCcEEEEEE
Confidence                                     01234456677889999999999999999999999999987     568999999


Q ss_pred             HHHHHHH
Q 013262          423 RQDLRAF  429 (447)
Q Consensus       423 r~DLl~~  429 (447)
                      +.|++++
T Consensus       102 ~~dll~~  108 (109)
T cd04606         102 VDDVIDV  108 (109)
T ss_pred             hHHhhhh
Confidence            9999875

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=99.26  E-value=3.4e-11  Score=128.67  Aligned_cols=162  Identities=19%  Similarity=0.158  Sum_probs=113.2

Q ss_pred             ccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhh--h
Q 013262          253 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ--E  330 (447)
Q Consensus       253 l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~--~  330 (447)
                      .+|+|+|.+  +++++++++++.++++.|.+++++.+||+|++           ++++|+|+.+|+...+.+.+-..  .
T Consensus        68 ~~V~dim~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-----------g~l~Givt~~di~~~~~~~~~~~~~~  134 (546)
T PRK14869         68 PQVRDLEID--KPVTVSPDTSLKEAWNLMDENNVKTLPVVDEE-----------GKLLGLVSLSDLARAYMDILDPEILS  134 (546)
T ss_pred             CcHHHhcCC--CCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC-----------CEEEEEEEHHHHHHHHHhhcchhhhh
Confidence            689999998  89999999999999999999999999999987           89999999999988665432100  0


Q ss_pred             cccchhhhhhh------------------cc--------hHHHHhhhcc----------------------------ccc
Q 013262          331 KRRTEEWEVRE------------------KF--------SWVELAEREG----------------------------KIE  356 (447)
Q Consensus       331 ~~~~~~~~~~~------------------~~--------~~~d~~~~~~----------------------------~~~  356 (447)
                      .....-.++.+                  .+        ...+...++.                            .+.
T Consensus       135 ~~~~t~~~i~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~d~~~~ai~~~~~~lIlt~g~~~~  214 (546)
T PRK14869        135 KSPTSLENIIRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDREDIQLAAIEAGVRLLIITGGAPVS  214 (546)
T ss_pred             hcCCCHHHHHHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcHHHHHHHHHcCCCEEEECCCCCCC
Confidence            00000000000                  00        0000000000                            000


Q ss_pred             -------------------ccccchhhhhhccCcccccc-CCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCc
Q 013262          357 -------------------EVAVTSEEMEMYIDLHPLTN-TTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSP  416 (447)
Q Consensus       357 -------------------~~~l~~~~~~~~idl~~im~-~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~  416 (447)
                                         +..-+........+++++|+ +++.++++++++.++.+.|.+.+.+++||+|+     +|+
T Consensus       215 ~~v~~la~~~~i~ii~t~~dt~~t~~~l~~~~~V~~iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~-----~g~  289 (546)
T PRK14869        215 EDVLELAKENGVTVISTPYDTFTTARLINQSIPVSYIMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDE-----DGK  289 (546)
T ss_pred             HHHHHHHHhCCCeEEEecccHHHHHHHhhcCCCHHHhccCCCcEEECCCCcHHHHHHHHHhcCCCceEEEcC-----CCC
Confidence                               00000111234567889999 89999999999999999999999999999997     578


Q ss_pred             EEEEEeHHHHHHHHHh
Q 013262          417 VVGILTRQDLRAFNIL  432 (447)
Q Consensus       417 lvGIITr~DLl~~~~~  432 (447)
                      ++|+||++|+++...+
T Consensus       290 lvGiit~~dl~~~~~~  305 (546)
T PRK14869        290 VVGVISRYHLLSPVRK  305 (546)
T ss_pred             EEEEEEHHHhhccccC
Confidence            9999999999986554

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.26  E-value=5.9e-11  Score=98.00  Aligned_cols=109  Identities=24%  Similarity=0.322  Sum_probs=86.1

Q ss_pred             CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262          264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF  343 (447)
Q Consensus       264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~  343 (447)
                      ++.++++++++.++.+.+.+.+++.+||+++            ++++|+++..|+.+.+..... .              
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~------------~~~~G~v~~~dl~~~~~~~~~-~--------------   54 (110)
T cd04609           2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD------------GRVVGSIDESDLLDALIEGKA-K--------------   54 (110)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCceeeEeeC------------CeeEEEEeHHHHHHHHhcccc-c--------------
Confidence            5678899999999999999989999999986            689999999999875432110 0              


Q ss_pred             hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262          344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR  423 (447)
Q Consensus       344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr  423 (447)
                                             ...++.++|++.+.++++++++.++.++|.+ . ..+||+++     +++++|+||+
T Consensus        55 -----------------------~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~-~-~~~~vv~~-----~~~~~Gvvt~  104 (110)
T cd04609          55 -----------------------FSLPVREVMGEPLPTVDPDAPIEELSELLDR-G-NVAVVVDE-----GGKFVGIITR  104 (110)
T ss_pred             -----------------------cCcCHHHHhcCCCceeCCCCcHHHHHHHHHh-C-CceeEEec-----CCeEEEEEeH
Confidence                                   0012344566778899999999999999998 3 34788887     5679999999


Q ss_pred             HHHHHH
Q 013262          424 QDLRAF  429 (447)
Q Consensus       424 ~DLl~~  429 (447)
                      +|+++|
T Consensus       105 ~di~~~  110 (110)
T cd04609         105 ADLLKY  110 (110)
T ss_pred             HHhhcC
Confidence            999864

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=99.25  E-value=7.7e-11  Score=97.03  Aligned_cols=100  Identities=17%  Similarity=0.135  Sum_probs=84.1

Q ss_pred             eEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcchH
Q 013262          266 ITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSW  345 (447)
Q Consensus       266 v~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~  345 (447)
                      .++++++++.++.+.+.+.+++.+||+|+            ++++|+++.+|+.....                      
T Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~------------~~~~G~v~~~~l~~~~~----------------------   49 (104)
T cd04594           4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY------------NKFLGAVYLKDIENATY----------------------   49 (104)
T ss_pred             eEECCCCCHHHHHHHHHHcCCcEEEEEEC------------CEEEEEEEHHHHhhhcc----------------------
Confidence            46789999999999999889999999985            68999999999854110                      


Q ss_pred             HHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHH
Q 013262          346 VELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQD  425 (447)
Q Consensus       346 ~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~D  425 (447)
                                             .++.++|...+.++++++++.++++.|.+.+.+.+||+|+      ++++|+||++|
T Consensus        50 -----------------------~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~------~~~iGvit~~d  100 (104)
T cd04594          50 -----------------------GDVVDYIVRGIPYVRLTSTAEEAWEVMMKNKTRWCPVVDD------GKFKGIVTLDS  100 (104)
T ss_pred             -----------------------cchhhhhhcCCcEEcCCCCHHHHHHHHHHcCcceEEEEEC------CEEEEEEEHHH
Confidence                                   0133456677889999999999999999999999999974      57999999999


Q ss_pred             HHH
Q 013262          426 LRA  428 (447)
Q Consensus       426 Ll~  428 (447)
                      +++
T Consensus       101 l~~  103 (104)
T cd04594         101 ILD  103 (104)
T ss_pred             hhc
Confidence            875

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>COG0517 FOG: CBS domain [General function prediction only]

Probab=99.25  E-value=1.2e-10  Score=97.47  Aligned_cols=113  Identities=22%  Similarity=0.301  Sum_probs=93.9

Q ss_pred             ccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchh
Q 013262          257 ELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEE  336 (447)
Q Consensus       257 diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~  336 (447)
                      ++|.+  +++++.++.++.++...|.+++...+||++.            .+++|+|+.+|+.+.+......        
T Consensus         3 ~~~~~--~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~------------~~l~Giit~~di~~~~~~~~~~--------   60 (117)
T COG0517           3 DIMTK--DVITVKPDTSVRDALLLMSENGVSAVPVVDD------------GKLVGIITERDILRALAAGGKR--------   60 (117)
T ss_pred             ccccC--CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC------------CEEEEEEEHHHHHHHHhccCCc--------
Confidence            44556  8899999999999999999999999999986            4899999999998866432100        


Q ss_pred             hhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHH-cCCCEEEEEeCcccCCCC
Q 013262          337 WEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQ-VGLRHLLVVPKYEAAGVS  415 (447)
Q Consensus       337 ~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~-~gl~~LpVVd~~~~~g~~  415 (447)
                                                     ...+.++|..++.++.+++++.++.+.|.+ .+.+++||+++     ++
T Consensus        61 -------------------------------~~~v~~v~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~-----~~  104 (117)
T COG0517          61 -------------------------------LLPVKEVMTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDD-----DG  104 (117)
T ss_pred             -------------------------------cccHHHhccCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEEC-----CC
Confidence                                           002455677788999999999999999999 69999999997     44


Q ss_pred             -cEEEEEeHHHHH
Q 013262          416 -PVVGILTRQDLR  427 (447)
Q Consensus       416 -~lvGIITr~DLl  427 (447)
                       +++|++|++|++
T Consensus       105 ~~lvGivt~~di~  117 (117)
T COG0517         105 GKLVGIITLSDIL  117 (117)
T ss_pred             CeEEEEEEHHHcC
Confidence             899999999973

>cd01031 EriC ClC chloride channel EriC

Probab=99.25  E-value=4.4e-11  Score=122.96  Aligned_cols=120  Identities=16%  Similarity=0.205  Sum_probs=99.1

Q ss_pred             ChHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHhhccCCcchHHHHHHH
Q 013262          100 TNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLG  179 (447)
Q Consensus       100 ~~~~~i~~l~~~~~~~~~~~~~l~~~~~~k~~~~~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~~~~~~a~~G  179 (447)
                      +|...++..++.+. ....    .-.++.|++.+++++|+|.|+|.+.|++.+||++|..+++.++. ...+...+..+|
T Consensus        65 ~G~~~v~~~l~~~~-~~~~----~~~~~~k~~~~~l~~gsG~s~G~EgP~v~iga~ig~~~~~~~~~-~~~~~~~l~~~g  138 (402)
T cd01031          65 SGIPQVEGVLAGLL-PPNW----WRVLPVKFVGGVLALGSGLSLGREGPSVQIGAAIGQGVSKWFKT-SPEERRQLIAAG  138 (402)
T ss_pred             CCHHHHHHHHcCCC-Cccc----HHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHH
Confidence            34555666666432 1112    23466899999999999999999999999999999999998764 234567899999


Q ss_pred             HHHHHHhhhchhHHHHHHHHH-hhcCCc--hHHHHHHHHHHHHHHHhhc
Q 013262          180 AASLMAGSMRMTVSLCVIFLE-LTNNLL--LLPITMIVLLIAKTVGDSF  225 (447)
Q Consensus       180 ~aa~~~g~~~~p~s~~vi~~E-~t~~~~--~~~p~~ia~~va~~v~~~l  225 (447)
                      |||.++++.++|++++++.+| ++++++  .+.|+++++++|+.+.+.+
T Consensus       139 ~aag~aa~f~aPl~g~lf~~E~~~~~~~~~~~~~~~~a~~~a~~v~~~~  187 (402)
T cd01031         139 AAAGLAAAFNAPLAGVLFVLEELRHSFSPLALLTALVASIAADFVSRLF  187 (402)
T ss_pred             HHHhHHHHhCCccHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999 778766  7999999999999998875

This domain is found in the EriC chloride transporters that mediate the extreme acid resistance response in eubacteria and archaea. This response allows bacteria to survive in the acidic environments by decarboxylation-linked proton utilization. As shown for Escherichia coli EriC, these channels can counterbalance the electric current produced by the outwardly directed virtual proton pump linked to amino acid decarboxylation. The EriC proteins belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. In Escherichia coli EriC, a glutamate residue that protrudes into the pore is thought to participate in gating by binding to a Cl- ion site within the selectivity filter.

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.24  E-value=7.8e-11  Score=99.33  Aligned_cols=119  Identities=23%  Similarity=0.298  Sum_probs=91.5

Q ss_pred             CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262          264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF  343 (447)
Q Consensus       264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~  343 (447)
                      ++.+++++.++.++.+.|.+.+++.+||+|+            ++++|+++..++...+.... ..+..           
T Consensus         2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~------------~~~~G~v~~~~l~~~~~~~~-~~~~~-----------   57 (121)
T cd04633           2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG------------GKLVGIVTEKDIADALRSFR-PLVRD-----------   57 (121)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC------------CEEEEEEchHHHHHhhhhhh-hcccc-----------
Confidence            5678999999999999998888899999985            79999999999987543211 00000           


Q ss_pred             hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262          344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR  423 (447)
Q Consensus       344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr  423 (447)
                      .  ..              .......++.++|..++.++.+++++.+++++|.+.+.+++||+|+      ++++|+||+
T Consensus        58 ~--~~--------------~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~------~~~~Gvi~~  115 (121)
T cd04633          58 R--HQ--------------ERRIRNLPVSDIMTRPVITIEPDTSVSDVASLMLENNIGGLPVVDD------GKLVGIVTR  115 (121)
T ss_pred             h--hh--------------hhhhhccCHHHHccCCceEECCCCcHHHHHHHHHHcCCCcccEEEC------CEEEEEEEH
Confidence            0  00              0000123455677788999999999999999999999999999984      579999999


Q ss_pred             HHHHH
Q 013262          424 QDLRA  428 (447)
Q Consensus       424 ~DLl~  428 (447)
                      +|+++
T Consensus       116 ~dl~~  120 (121)
T cd04633         116 TDILR  120 (121)
T ss_pred             HHhhc
Confidence            99985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=99.24  E-value=9.7e-11  Score=96.42  Aligned_cols=104  Identities=24%  Similarity=0.418  Sum_probs=87.1

Q ss_pred             CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262          264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF  343 (447)
Q Consensus       264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~  343 (447)
                      ++.+++.+.++.++.+.+.+.+.+.+||+|+            ++++|+++..+|...  .    .              
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~------------~~~~g~v~~~~l~~~--~----~--------------   50 (107)
T cd04610           3 DVITVSPDNTVKDVIKLIKETGHDGFPVVDN------------GKVVGIVSARDLLGK--D----P--------------   50 (107)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCeeeEeEC------------CEEEEEEEHHHhhcc--C----c--------------
Confidence            6778999999999999998888888999875            689999999998531  0    0              


Q ss_pred             hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262          344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR  423 (447)
Q Consensus       344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr  423 (447)
                                              ..+++++|...+.++.+++++.++++.|.+.+.+.+||+++     +|+++|+|++
T Consensus        51 ------------------------~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~g~~~Gvi~~  101 (107)
T cd04610          51 ------------------------DETVEEIMSKDLVVAVPEMDIMDAARVMFRTGISKLPVVDE-----NNNLVGIITN  101 (107)
T ss_pred             ------------------------cccHHHhCCCCCeEECCCCCHHHHHHHHHHhCCCeEeEECC-----CCeEEEEEEH
Confidence                                    01244556677889999999999999999999999999987     4689999999


Q ss_pred             HHHHH
Q 013262          424 QDLRA  428 (447)
Q Consensus       424 ~DLl~  428 (447)
                      +|+++
T Consensus       102 ~di~~  106 (107)
T cd04610         102 TDVIR  106 (107)
T ss_pred             HHhhc
Confidence            99975

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.22  E-value=1.2e-10  Score=98.05  Aligned_cols=119  Identities=24%  Similarity=0.333  Sum_probs=91.5

Q ss_pred             CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262          264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF  343 (447)
Q Consensus       264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~  343 (447)
                      ++.+++++.++.++.+.+.+.+++.+||+|++           ++++|+++..++........ .....           
T Consensus         2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~-----------~~~~G~v~~~~l~~~~~~~~-~~~~~-----------   58 (121)
T cd04584           2 DVVTITPTTTIAEALELMREHKIRHLPVVDEE-----------GRLVGIVTDRDLRDASPSPF-TTLSE-----------   58 (121)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCcccEECCC-----------CcEEEEEEHHHHHHHhhhhc-ccchh-----------
Confidence            56788999999999999998889999999987           89999999999976432110 00000           


Q ss_pred             hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262          344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR  423 (447)
Q Consensus       344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr  423 (447)
                        .+.               ......+++++|...+.++.+++++.++++.|.+.+..++||+++      ++++|+||.
T Consensus        59 --~~~---------------~~~~~~~v~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~------~~~~Gvv~~  115 (121)
T cd04584          59 --HEL---------------YLLLKMPVKEIMTKDVITVHPLDTVEEAALLMREHRIGCLPVVED------GRLVGIITE  115 (121)
T ss_pred             --hhh---------------hhhcCcCHHHHhhCCCeEECCCCcHHHHHHHHHHcCCCeEEEeeC------CEEEEEEEH
Confidence              000               000123455677788899999999999999999999999999974      579999999


Q ss_pred             HHHHH
Q 013262          424 QDLRA  428 (447)
Q Consensus       424 ~DLl~  428 (447)
                      +|+++
T Consensus       116 ~di~~  120 (121)
T cd04584         116 TDLLR  120 (121)
T ss_pred             HHhhc
Confidence            99975

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.20  E-value=2.3e-10  Score=96.16  Aligned_cols=113  Identities=19%  Similarity=0.229  Sum_probs=87.9

Q ss_pred             CeeEecCCCCHHHHHHHHhcCC-CCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhc
Q 013262          264 PVITLSGIEKVSQIVDVLRNTT-HNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREK  342 (447)
Q Consensus       264 ~vv~l~~~~tv~~~~~~L~~~~-~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~  342 (447)
                      ++.++++++++.++.+.++..+ ++.+||+|+            ++++|+|+.+|+..++...+ ..        +.   
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~------------~~~~G~v~~~~l~~~~~~~~-~~--------~~---   57 (119)
T cd04598           2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD------------GRPVGLIMREALMELLSTPY-GR--------AL---   57 (119)
T ss_pred             CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC------------CeeEEEEEHHHHHHHHhchh-hH--------HH---
Confidence            5567899999999999998776 889999986            68999999999976543211 00        00   


Q ss_pred             chHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCE---EEEEeCcccCCCCcEEE
Q 013262          343 FSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRH---LLVVPKYEAAGVSPVVG  419 (447)
Q Consensus       343 ~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~---LpVVd~~~~~g~~~lvG  419 (447)
                                             ....++.++|+.++.++.+++++.++++.|.+.+.++   .+|+++     +++++|
T Consensus        58 -----------------------~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~-----~~~~~G  109 (119)
T cd04598          58 -----------------------YGKKPVSEVMDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTE-----EGRYLG  109 (119)
T ss_pred             -----------------------HcCCcHHHhcCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEee-----CCeEEE
Confidence                                   0012355678888999999999999999999998653   368876     578999


Q ss_pred             EEeHHHHHH
Q 013262          420 ILTRQDLRA  428 (447)
Q Consensus       420 IITr~DLl~  428 (447)
                      +||++|+++
T Consensus       110 vvs~~di~~  118 (119)
T cd04598         110 IGTVKDLLR  118 (119)
T ss_pred             EEEHHHHhc
Confidence            999999975

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.18  E-value=2.9e-10  Score=99.55  Aligned_cols=136  Identities=23%  Similarity=0.289  Sum_probs=95.1

Q ss_pred             CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhh----cc-cchhhh
Q 013262          264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQE----KR-RTEEWE  338 (447)
Q Consensus       264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~----~~-~~~~~~  338 (447)
                      +++++++++++.++.+.|.+++++++||+|+            ++++|++++.|+...+........    +. ......
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~------------~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~   69 (143)
T cd04634           2 NPITCNADDTISDAARLLRENKISGAPVLDG------------GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELP   69 (143)
T ss_pred             CcEEecCCCCHHHHHHHHHHcCCCcceEeEC------------CeEEEEecHHHHHHHHHhccCccccccCCcceeeecc
Confidence            5678999999999999999999999999985            689999999999876653221000    00 000000


Q ss_pred             hhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEE
Q 013262          339 VREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVV  418 (447)
Q Consensus       339 ~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lv  418 (447)
                      ..+...+.+....           .+.....++.++|+..+.++.+++++.++++.|.+.+.+++||+++      ++++
T Consensus        70 ~~~~~~~~~~~~~-----------~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~------~~~~  132 (143)
T cd04634          70 LREFINWEETKRA-----------LTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED------GRLV  132 (143)
T ss_pred             chheeehHHHHHH-----------HHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC------CEEE
Confidence            0000111111100           0001234566788889999999999999999999999999999984      5799


Q ss_pred             EEEeHHHHHH
Q 013262          419 GILTRQDLRA  428 (447)
Q Consensus       419 GIITr~DLl~  428 (447)
                      |+||++|+++
T Consensus       133 Gvvt~~dl~~  142 (143)
T cd04634         133 GIVTRGDIIE  142 (143)
T ss_pred             EEEEHHHhhc
Confidence            9999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.17  E-value=3.3e-10  Score=93.34  Aligned_cols=104  Identities=27%  Similarity=0.352  Sum_probs=86.3

Q ss_pred             CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262          264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF  343 (447)
Q Consensus       264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~  343 (447)
                      ++.+++.+.++.++.+.+.+.+++.+||++++           ++++|+++.+++....   .   +             
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-----------~~~~g~v~~~~l~~~~---~---~-------------   51 (106)
T cd04638           2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKS-----------GELVGIITRKDLLRNP---E---E-------------   51 (106)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCC-----------CcEEEEEEHHHHHhcc---c---c-------------
Confidence            56788899999999999988888999999986           7899999999985410   0   0             


Q ss_pred             hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262          344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR  423 (447)
Q Consensus       344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr  423 (447)
                                               ..+.++|...+.++.+++++.++++.|.+.+.+.+||+|+      ++++|+||+
T Consensus        52 -------------------------~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~------~~~~G~it~  100 (106)
T cd04638          52 -------------------------EQLALLMTRDPPTVSPDDDVKEAAKLMVENNIRRVPVVDD------GKLVGIVTV  100 (106)
T ss_pred             -------------------------chHHHHhcCCCceECCCCCHHHHHHHHHHcCCCEEEEEEC------CEEEEEEEH
Confidence                                     0123445677889999999999999999999999999985      479999999


Q ss_pred             HHHHH
Q 013262          424 QDLRA  428 (447)
Q Consensus       424 ~DLl~  428 (447)
                      +|+++
T Consensus       101 ~d~~~  105 (106)
T cd04638         101 ADIVR  105 (106)
T ss_pred             HHhhc
Confidence            99875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=99.16  E-value=1.3e-10  Score=118.62  Aligned_cols=124  Identities=19%  Similarity=0.246  Sum_probs=107.3

Q ss_pred             cccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhc
Q 013262          252 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEK  331 (447)
Q Consensus       252 ~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~  331 (447)
                      ..+++++|..  +.+++++..++.++.+.|.+.+.+...|++++           +.+.|+||++|+........     
T Consensus       148 ~trv~~~~~~--~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~-----------~~~~GIvT~~dl~~~v~~~g-----  209 (610)
T COG2905         148 LTRVGEVKTL--PAVTVSPQASIQDAARKMKDEGVSSLVVLDDS-----------GPLLGIVTRKDLRSRVIADG-----  209 (610)
T ss_pred             HHHHHHHhcC--CCcccCccCcHHHHHHHHHhcCCCeEEEEcCC-----------CCccceeehHHHHHHHHhcC-----
Confidence            4578999998  89999999999999999999999988888887           89999999999987543211     


Q ss_pred             ccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCccc
Q 013262          332 RRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEA  411 (447)
Q Consensus       332 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~  411 (447)
                                                       .+...+++++|+.++++|.+++.+.+|+-+|.+.+++|+||+++   
T Consensus       210 ---------------------------------~~~~~~V~evmT~p~~svd~~~~~feAml~m~r~~I~hl~V~e~---  253 (610)
T COG2905         210 ---------------------------------RSKTQKVSEVMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTED---  253 (610)
T ss_pred             ---------------------------------CCcccchhhhhccCceeecCcchHHHHHHHHHHhCCceeeeecC---
Confidence                                             11234688899999999999999999999999999999999974   


Q ss_pred             CCCCcEEEEEeHHHHHHHHHh
Q 013262          412 AGVSPVVGILTRQDLRAFNIL  432 (447)
Q Consensus       412 ~g~~~lvGIITr~DLl~~~~~  432 (447)
                         |+++||||..||++....
T Consensus       254 ---gq~~Gilt~~dIl~l~s~  271 (610)
T COG2905         254 ---GQPLGILTLTDILRLFSQ  271 (610)
T ss_pred             ---CeeeEEeeHHHHHHhhCC
Confidence               679999999999987664

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=99.14  E-value=7e-10  Score=114.90  Aligned_cols=133  Identities=21%  Similarity=0.312  Sum_probs=109.0

Q ss_pred             cccccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhh
Q 013262          250 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ  329 (447)
Q Consensus       250 l~~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~  329 (447)
                      +++.+|+++|+++.++..++.+.+++++.+.+.+++|+.+||.+++          .+.++|+|+.+||+..+.+...  
T Consensus       203 l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~----------~D~iiGiv~~Kdll~~~~~~~~--  270 (429)
T COG1253         203 LDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGD----------LDNIIGIVHVKDLLRALLDGQS--  270 (429)
T ss_pred             cCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCC----------CCcEEEEEEHHHHHHHHhcCcc--
Confidence            6788999999998899999999999999999999999999999943          2789999999999875543210  


Q ss_pred             hcccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCc
Q 013262          330 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKY  409 (447)
Q Consensus       330 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~  409 (447)
                                                            ..+....+ ++|+.|++.+++.++++.|++.+.+...|+|+ 
T Consensus       271 --------------------------------------~~~~~~~~-~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDE-  310 (429)
T COG1253         271 --------------------------------------DLDLRVLV-RPPLFVPETLSLSDLLEEFREERTHMAIVVDE-  310 (429)
T ss_pred             --------------------------------------ccchhhcc-cCCeEecCCCcHHHHHHHHHHhCCeEEEEEEc-
Confidence                                                  00011111 37889999999999999999999999999998 


Q ss_pred             ccCCCCcEEEEEeHHHHHHHHHhhhcCcc
Q 013262          410 EAAGVSPVVGILTRQDLRAFNILTAFPHL  438 (447)
Q Consensus       410 ~~~g~~~lvGIITr~DLl~~~~~~~~~~~  438 (447)
                          .|.+.|+||.+|+++...-+...+-
T Consensus       311 ----yG~~~GlVTleDIiEeIvGei~de~  335 (429)
T COG1253         311 ----YGGVEGLVTLEDIIEEIVGEIPDEH  335 (429)
T ss_pred             ----CCCeEEEeEHHHHHHHHhCCCcCcc
Confidence                4569999999999998887655443

>PRK05277 chloride channel protein; Provisional

Probab=99.14  E-value=3.4e-10  Score=117.62  Aligned_cols=121  Identities=16%  Similarity=0.152  Sum_probs=96.8

Q ss_pred             ChHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHhhccCCcchHHHHHHH
Q 013262          100 TNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLG  179 (447)
Q Consensus       100 ~~~~~i~~l~~~~~~~~~~~~~l~~~~~~k~~~~~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~~~~~~a~~G  179 (447)
                      +|...++..++...  .+.+   .-.+..|++.+.+++|+|.|+|.+.|++.+||++|..++..++.....+...+..+|
T Consensus        72 sGi~~i~~~l~~~~--~~~~---~~~~~~k~~~~~l~~gsG~s~G~EgP~v~iGa~ig~~~~~~~~~~~~~~~~~li~~G  146 (438)
T PRK05277         72 SGIPEIEGALEGLR--PVRW---WRVLPVKFFGGLGTLGSGMVLGREGPTVQMGGNIGRMVLDIFRLRSDEARHTLLAAG  146 (438)
T ss_pred             CCHHHHHHHHcCCC--ccch---HHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHHHcccCCHHHHHHHHHHH
Confidence            44555666666431  2221   123468999999999999999999999999999999999988642234566799999


Q ss_pred             HHHHHHhhhchhHHHHHHHHH-hhcC--Cc--hHHHHHHHHHHHHHHHhhc
Q 013262          180 AASLMAGSMRMTVSLCVIFLE-LTNN--LL--LLPITMIVLLIAKTVGDSF  225 (447)
Q Consensus       180 ~aa~~~g~~~~p~s~~vi~~E-~t~~--~~--~~~p~~ia~~va~~v~~~l  225 (447)
                      |||.+++++++|++++++.+| +++.  ++  .+.|+++++++|+.+.+.+
T Consensus       147 ~aaglaa~f~APl~g~lf~~E~~~~~~~~~~~~~~~~~~a~~~a~~v~~~~  197 (438)
T PRK05277        147 AAAGLAAAFNAPLAGILFVIEEMRPQFRYSLISIKAVFIGVIMATIVFRLF  197 (438)
T ss_pred             HHHhHHHhcCCchHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999 6663  34  4789999999999998876

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=99.08  E-value=3.9e-10  Score=115.70  Aligned_cols=127  Identities=23%  Similarity=0.236  Sum_probs=106.6

Q ss_pred             cccccccccCCCCeeEecCCCCHHHHHHHHhcC-----CCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhh
Q 013262          252 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNT-----THNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKW  326 (447)
Q Consensus       252 ~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~-----~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~  326 (447)
                      .-+|+.+|++  +.++++++.|++++++.+++.     ....+.|+|++           ++++|+++.++|+..  +  
T Consensus       131 e~taG~~Mt~--e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~-----------~~L~Gvvsl~~Ll~a--~--  193 (451)
T COG2239         131 EDTAGRIMTT--EFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEK-----------GKLLGVVSLRDLLTA--E--  193 (451)
T ss_pred             hhhhhcccee--eeEEeccCcCHHHHHHHHHHhcccccccceEEEECCc-----------cceEEEeeHHHHhcC--C--
Confidence            3578999999  999999999999999999843     35678899987           899999999998531  0  


Q ss_pred             hhhhcccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEE
Q 013262          327 FLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVV  406 (447)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVV  406 (447)
                                                              ....+.++|++.+++|.+++..+++.++|+++++-.+|||
T Consensus       194 ----------------------------------------~~~~i~~im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVV  233 (451)
T COG2239         194 ----------------------------------------PDELLKDLMEDDVVSVLADDDQEEVARLFEKYDLLAVPVV  233 (451)
T ss_pred             ----------------------------------------cHhHHHHHhcccceeecccCCHHHHHHHHHHhCCeecceE
Confidence                                                    0112556788889999999999999999999999999999


Q ss_pred             eCcccCCCCcEEEEEeHHHHHHHHHhhhcCcccc
Q 013262          407 PKYEAAGVSPVVGILTRQDLRAFNILTAFPHLER  440 (447)
Q Consensus       407 d~~~~~g~~~lvGIITr~DLl~~~~~~~~~~~~~  440 (447)
                      |+     +++++|+||-.|+++...++..+...+
T Consensus       234 d~-----~~~LiG~itiDDiidvi~eEa~eDi~~  262 (451)
T COG2239         234 DE-----DNRLIGIITIDDIIDVIEEEATEDILR  262 (451)
T ss_pred             CC-----CCceeeeeeHHHHHHHHHHHHHHHHHH
Confidence            98     678999999999999888776655443

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=99.06  E-value=1.2e-09  Score=106.72  Aligned_cols=132  Identities=20%  Similarity=0.312  Sum_probs=110.1

Q ss_pred             cccccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhh
Q 013262          250 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ  329 (447)
Q Consensus       250 l~~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~  329 (447)
                      +++++|+|+|.++.++..++.+++.+++++.+....|+.+||-.++.          +..+|++..+|+++++.++.   
T Consensus       197 Le~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~----------DnIiGvlh~r~llr~l~e~~---  263 (423)
T COG4536         197 LENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDL----------DNIIGVLHVRDLLRLLNEKN---  263 (423)
T ss_pred             cccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCCh----------hHhhhhhhHHHHHHHhhccC---
Confidence            67899999999988899999999999999999999999999998762          45999999999999886542   


Q ss_pred             hcccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCc
Q 013262          330 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKY  409 (447)
Q Consensus       330 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~  409 (447)
                                  .++-.|+.+                       . -..|+.|++.+++.+-+..|++.+-+.-.|||+ 
T Consensus       264 ------------~~~k~d~~~-----------------------~-a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDE-  306 (423)
T COG4536         264 ------------EFTKEDILR-----------------------A-ADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDE-  306 (423)
T ss_pred             ------------cccHhHHHH-----------------------H-hcCCeecCCCCcHHHHHHHHHHhcceEEEEEec-
Confidence                        011122221                       1 157899999999999999999999999999999 


Q ss_pred             ccCCCCcEEEEEeHHHHHHHHHhhhc
Q 013262          410 EAAGVSPVVGILTRQDLRAFNILTAF  435 (447)
Q Consensus       410 ~~~g~~~lvGIITr~DLl~~~~~~~~  435 (447)
                          .|.+.|+||.+|++++..-+..
T Consensus       307 ----YG~i~GLVTLEDIlEEIVGdft  328 (423)
T COG4536         307 ----YGDIQGLVTLEDILEEIVGDFT  328 (423)
T ss_pred             ----cCcEEeeeeHHHHHHHHhcccc
Confidence                4569999999999998775544

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=98.98  E-value=4.1e-09  Score=91.46  Aligned_cols=116  Identities=13%  Similarity=0.103  Sum_probs=79.8

Q ss_pred             CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262          264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF  343 (447)
Q Consensus       264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~  343 (447)
                      ++.++++++++.++++.|...+++.+||+|++           ++++|+|+..|+++.+...+.........-.. .+..
T Consensus         2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~-----------g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~-~~~~   69 (133)
T cd04592           2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSD-----------DFLEGILTLGDIQRFLFTNKTTRVQPEDETKQ-TNTC   69 (133)
T ss_pred             CceEECCCCCHHHHHHHHHHcCCCEEEEECCC-----------CeEEEEEEHHHHHHHHhhccccccccchhhcc-cccc
Confidence            57789999999999999998889999999987           89999999999988664322110000000000 0000


Q ss_pred             hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeC
Q 013262          344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPK  408 (447)
Q Consensus       344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~  408 (447)
                      ...+++.                 ...+.+.|..+++++++++++.+|+++|.+.+.+++||+|+
T Consensus        70 ~v~~i~~-----------------~~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~  117 (133)
T cd04592          70 LVSSVCT-----------------KGISYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKR  117 (133)
T ss_pred             cHHHHhh-----------------hhhhhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecC
Confidence            0001110                 00122334567889999999999999999999999999986

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>cd03682 ClC_sycA_like ClC sycA-like chloride channel proteins

Probab=98.93  E-value=9.3e-09  Score=104.89  Aligned_cols=99  Identities=15%  Similarity=0.155  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHhhhchhHHHHHHHHHhh--c
Q 013262          126 FILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELT--N  203 (447)
Q Consensus       126 ~~~k~~~~~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~~~~~~a~~G~aa~~~g~~~~p~s~~vi~~E~t--~  203 (447)
                      ...|++++.+++++|.|+|.+.|+..+||++|..+++.++. ...+...+..+||||.++++.++|++++++.+|++  +
T Consensus        78 ~~~k~~~~~l~l~~G~s~G~Egp~v~~ga~~~~~~~~~~~~-~~~~~r~l~~~g~aAglaa~f~aPl~g~~f~~E~~~~~  156 (378)
T cd03682          78 APLVLFGTVLTHLFGGSAGREGTAVQMGGSLADAFGRVFKL-PEEDRRILLIAGIAAGFAAVFGTPLAGAIFALEVLVLG  156 (378)
T ss_pred             HHHHHHHHHHHHHcCCccCCcchHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHh
Confidence            34699999999999999999999999999999999998763 12244578999999999999999999999999997  3


Q ss_pred             C--CchHHHHHHHHHHHHHHHhhc
Q 013262          204 N--LLLLPITMIVLLIAKTVGDSF  225 (447)
Q Consensus       204 ~--~~~~~p~~ia~~va~~v~~~l  225 (447)
                      +  +..+.|.++++++++.+++.+
T Consensus       157 ~~~~~~~~~~~i~~~~a~~v~~~~  180 (378)
T cd03682         157 RLRYSALIPCLVAAIVADWVSHAL  180 (378)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHh
Confidence            3  456889999999999988766

This ClC family presents in bacteria, where it facilitates acid resistance in acidic soil. Mutation of this gene (sycA) in Rhizobium tropici CIAT899 causes serious deficiencies in nodule development, nodulation competitiveness, and N2 fixation on Phaseolus vulgaris plants, due to its reduced ability for acid resistance. This family is part of the ClC chloride channel superfamiy. These proteins catalyse the selective flow of Cl- ions across cell membranes and Cl-/H+ exchange transport. These proteins share two characteristics that are apparently inherent to the entire ClC chloride channel superfamily: a unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge.

>PF00571 CBS: CBS domain CBS domain web page

Probab=98.92  E-value=3.4e-09  Score=77.48  Aligned_cols=55  Identities=29%  Similarity=0.425  Sum_probs=50.6

Q ss_pred             cccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHHH
Q 013262          372 HPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI  431 (447)
Q Consensus       372 ~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~~  431 (447)
                      +++|+++++++++++++.++++.|++.+.+++||+|+     +++++|+||++|++++..
T Consensus         2 ~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~-----~~~~~G~is~~dl~~~l~   56 (57)
T PF00571_consen    2 GDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDE-----DGKLVGIISRSDLLKALL   56 (57)
T ss_dssp             HHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEEST-----TSBEEEEEEHHHHHHHHH
T ss_pred             eECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEec-----CCEEEEEEEHHHHHhhhh
Confidence            3578899999999999999999999999999999987     578999999999998764

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=98.79  E-value=1.1e-08  Score=94.11  Aligned_cols=129  Identities=22%  Similarity=0.328  Sum_probs=104.7

Q ss_pred             ccccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhh
Q 013262          251 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQE  330 (447)
Q Consensus       251 ~~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~  330 (447)
                      .+++|+|+|.++...++++.+.++.+.+..+.++.|+.|||+.++.          ..+.|++..+||+..+....    
T Consensus        65 adl~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edk----------D~v~GIL~AKDLL~~~~~~~----  130 (293)
T COG4535          65 ADLRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDK----------DHVEGILLAKDLLPFMRSDA----  130 (293)
T ss_pred             HHhhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCc----------hhhhhhhhHHHHHHHhcCCc----
Confidence            4689999999977899999999999999999999999999998752          67899999999998764311    


Q ss_pred             cccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcc
Q 013262          331 KRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYE  410 (447)
Q Consensus       331 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~  410 (447)
                                                          ...++.++. ++.+.|++.-.+...++-|+....+...|+|+  
T Consensus       131 ------------------------------------~~F~i~~lL-RPav~VPESKrvd~lLkeFR~~RnHMAIViDE--  171 (293)
T COG4535         131 ------------------------------------EPFDIKELL-RPAVVVPESKRVDRLLKEFRSQRNHMAIVIDE--  171 (293)
T ss_pred             ------------------------------------ccccHHHhc-ccceecccchhHHHHHHHHHhhcCceEEEEec--
Confidence                                                001222222 55678999999999999999999999999998  


Q ss_pred             cCCCCcEEEEEeHHHHHHHHHhhhc
Q 013262          411 AAGVSPVVGILTRQDLRAFNILTAF  435 (447)
Q Consensus       411 ~~g~~~lvGIITr~DLl~~~~~~~~  435 (447)
                         -|-+-|+||..|++....-..-
T Consensus       172 ---fGgVsGLVTIEDiLEqIVGdIE  193 (293)
T COG4535         172 ---FGGVSGLVTIEDILEQIVGDIE  193 (293)
T ss_pred             ---cCCeeeeEEHHHHHHHHhcccc
Confidence               3459999999999986654433

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=98.78  E-value=5.4e-08  Score=104.70  Aligned_cols=99  Identities=15%  Similarity=0.154  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHhhhchhHHHHHHHHHhh-cC
Q 013262          126 FILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELT-NN  204 (447)
Q Consensus       126 ~~~k~~~~~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~~~~~~a~~G~aa~~~g~~~~p~s~~vi~~E~t-~~  204 (447)
                      ...|++.+++|+|+|.|.|...|+..+||++|..+++.++.. .........+|+||.+|+++++|++++++.+|.+ ++
T Consensus       118 ~~~k~~~~~l~i~~G~s~G~EgP~v~~ga~~~~~~~~~~~~~-~~~~r~l~~~G~aAglaa~F~aPl~g~lFa~E~~~~~  196 (574)
T PRK01862        118 SLWRSASSLLTIGSGGSIGREGPMVQLAALAASLVGRFAHFD-PPRLRLLVACGAAAGITSAYNAPIAGAFFVAEIVLGS  196 (574)
T ss_pred             HHHHHHHHHHHHHcCCCcCCcchHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhhh
Confidence            346999999999999999999999999999999999998631 2233567889999999999999999999999975 55


Q ss_pred             Cc--hHHHHHHHHHHHHHHHhhc
Q 013262          205 LL--LLPITMIVLLIAKTVGDSF  225 (447)
Q Consensus       205 ~~--~~~p~~ia~~va~~v~~~l  225 (447)
                      +.  .+.|.++++++|+.+.+.+
T Consensus       197 ~~~~~~~~~~~as~~a~~v~~~~  219 (574)
T PRK01862        197 IAMESFGPLVVASVVANIVMREF  219 (574)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHH
Confidence            53  6889999999999999876

>PF00654 Voltage_CLC: Voltage gated chloride channel Mutation in several of these channels lead to human disease

Probab=98.78  E-value=5.3e-08  Score=98.56  Aligned_cols=100  Identities=20%  Similarity=0.273  Sum_probs=84.1

Q ss_pred             HHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHhhhchhHHHHHHHHHhhc-C
Q 013262          126 FILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTN-N  204 (447)
Q Consensus       126 ~~~k~~~~~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~~~~~~a~~G~aa~~~g~~~~p~s~~vi~~E~t~-~  204 (447)
                      .+.|++.+.+|.|+|.|.|...|+..+||++|..+++.++......-..+..+|+||.++++.++|++++++.+|... +
T Consensus        41 ~~~k~~~~~~s~~~G~s~G~EGp~v~iga~i~~~~~~~~~~~~~~~~r~l~~~g~aAglaa~F~aPlaG~lFalE~~~~~  120 (355)
T PF00654_consen   41 LPVKFVGSILSLGSGLSVGREGPSVQIGAAIGSWLGRRFRLSRNETRRLLLAAGAAAGLAAAFNAPLAGVLFALEELSRD  120 (355)
T ss_dssp             HHHHHHHHHHHHHTT-S-BSHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHCCTCHC
T ss_pred             HHHHHHHHHHHHhcCCCCcCccHHHHHHHHHHHHHHHhhcccchHHHhHHHHHHHHHHHHHHhcCCcccceehhheeecc
Confidence            448999999999999999999999999999999999997742222144599999999999999999999999999855 3


Q ss_pred             --CchHHHHHHHHHHHHHHHhhc
Q 013262          205 --LLLLPITMIVLLIAKTVGDSF  225 (447)
Q Consensus       205 --~~~~~p~~ia~~va~~v~~~l  225 (447)
                        +..+.|.++++++++.+.+.+
T Consensus       121 ~~~~~~~~~~~as~~a~~v~~~~  143 (355)
T PF00654_consen  121 FSVRLLLPALVASIVATLVSRLL  143 (355)
T ss_dssp             CSTTTHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhHHHHHHHHHHHHHHHHH
Confidence              458999999999999999987

; InterPro: IPR001807 Chloride channels (CLCs) constitute an evolutionarily well-conserved family of voltage-gated channels that are structurally unrelated to the other known voltage-gated channels. They are found in organisms ranging from bacteria to yeasts and plants, and also to animals. Their functions in higher animals likely include the regulation of cell volume, control of electrical excitability and trans-epithelial transport []. The first member of the family (CLC-0) was expression-cloned from the electric organ of Torpedo marmorata [], and subsequently nine CLC-like proteins have been cloned from mammals. They are thought to function as multimers of two or more identical or homologous subunits, and they have varying tissue distributions and functional properties. To date, CLC-0, CLC-1, CLC-2, CLC-4 and CLC-5 have been demonstrated to form functional Cl- channels; whether the remaining isoforms do so is either contested or unproven. One possible explanation for the difficulty in expressing activatable Cl- channels is that some of the isoforms may function as Cl- channels of intracellular compartments, rather than of the plasma membrane. However, they are all thought to have a similar transmembrane (TM) topology, initial hydropathy analysis suggesting 13 hydrophobic stretches long enough to form putative TM domains []. Recently, the postulated TM topology has been revised, and it now seems likely that the CLCs have 10 (or possibly 12) TM domains, with both N- and C-termini residing in the cytoplasm []. A number of human disease-causing mutations have been identified in the genes encoding CLCs. Mutations in CLCN1, the gene encoding CLC-1, the major skeletal muscle Cl- channel, lead to both recessively and dominantly-inherited forms of muscle stiffness or myotonia []. Similarly, mutations in CLCN5, which encodes CLC-5, a renal Cl- channel, lead to several forms of inherited kidney stone disease []. These mutations have been demonstrated to reduce or abolish CLC function.; GO: 0005247 voltage-gated chloride channel activity, 0006821 chloride transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2FEC_B 1KPK_F 2EZ0_A 1OTS_A 1OTT_B 2H2S_A 2FED_B 2HTL_A 2HTK_B 3NMO_A ....

>PF00571 CBS: CBS domain CBS domain web page

Probab=98.76  E-value=2e-08  Score=73.34  Aligned_cols=55  Identities=33%  Similarity=0.611  Sum_probs=51.8

Q ss_pred             ccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHH
Q 013262          255 VGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLAL  322 (447)
Q Consensus       255 v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L  322 (447)
                      |+|+|.+  +++++++++++.++.+.|.+++++.+||+|++           ++++|+|+++||++++
T Consensus         1 v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~-----------~~~~G~is~~dl~~~l   55 (57)
T PF00571_consen    1 VGDIMTP--PPITVSPDDSLEEALEIMRKNGISRLPVVDED-----------GKLVGIISRSDLLKAL   55 (57)
T ss_dssp             HHHHSBS--SSEEEETTSBHHHHHHHHHHHTSSEEEEESTT-----------SBEEEEEEHHHHHHHH
T ss_pred             CeECCcC--CCEEEcCcCcHHHHHHHHHHcCCcEEEEEecC-----------CEEEEEEEHHHHHhhh
Confidence            5789999  99999999999999999999999999999987           9999999999998865

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>COG0038 EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]

Probab=98.74  E-value=9.3e-08  Score=99.30  Aligned_cols=119  Identities=18%  Similarity=0.238  Sum_probs=95.8

Q ss_pred             hHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHhhccCCcchHHHHHHHH
Q 013262          101 NDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLGA  180 (447)
Q Consensus       101 ~~~~i~~l~~~~~~~~~~~~~l~~~~~~k~~~~~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~~~~~~a~~G~  180 (447)
                      +-+.+...++.. .+++++..    ..+|++++.+++|+|.+.|...|+..+|+++|..++..++.. ..+-.....+|+
T Consensus        93 Gi~~~i~a~~~~-~~~~~~~~----~~vk~~~~~l~i~sG~s~GrEGP~vqiga~~g~~~~~~l~~~-~~~~r~Ll~~Ga  166 (443)
T COG0038          93 GIPQAIEALHGR-KGRISPRV----LPVKLVATLLTIGSGASLGREGPSVQIGAAIGSLLGRLLKLS-REDRRILLAAGA  166 (443)
T ss_pred             ChhHHHHHHhcC-CCcccHHH----HHHHHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHH
Confidence            333344444432 23445543    335999999999999999999999999999999999999742 245567899999


Q ss_pred             HHHHHhhhchhHHHHHHHHHhhcC----CchHHHHHHHHHHHHHHHhhc
Q 013262          181 ASLMAGSMRMTVSLCVIFLELTNN----LLLLPITMIVLLIAKTVGDSF  225 (447)
Q Consensus       181 aa~~~g~~~~p~s~~vi~~E~t~~----~~~~~p~~ia~~va~~v~~~l  225 (447)
                      ||-+|++.++|++++++.+|.-..    +..+.|+++++++|+.+.+.+
T Consensus       167 AaGlaaaF~aPlagvlF~~E~l~~~~~~~~~l~p~~vaa~va~~v~~~~  215 (443)
T COG0038         167 AAGLAAAFNAPLAGALFAIEVLYGRFLEYRALVPVLVAAVVALLVAGLF  215 (443)
T ss_pred             HHHHHHHhCCcHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHc
Confidence            999999999999999999997543    347999999999999999987

>PRK01610 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=98.68  E-value=9e-08  Score=98.77  Aligned_cols=98  Identities=15%  Similarity=0.174  Sum_probs=87.4

Q ss_pred             HHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHhhhchhHHHHHHHHHh-hcC
Q 013262          126 FILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLEL-TNN  204 (447)
Q Consensus       126 ~~~k~~~~~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~~~~~~a~~G~aa~~~g~~~~p~s~~vi~~E~-t~~  204 (447)
                      ...|++.+.+++|+|.|.|...|+..+||++|..+++.++.  ..+...+..+|+||-++++.++|++++++.+|. .++
T Consensus       100 ~~~k~~~~~l~igsG~S~GrEGP~v~iGa~~g~~~~~~~~~--~~~~r~li~~GaaAGlaa~F~aPlaG~lFa~E~l~~~  177 (418)
T PRK01610        100 SLVKSLASLLVVTSGSAIGREGAMILLAALAASCFAQRFTP--RQEWKLWIACGAAAGMASAYHAPLAGSLFIAEILFGT  177 (418)
T ss_pred             HHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence            35899999999999999999999999999999999999872  455678999999999999999999999999996 454


Q ss_pred             Cc--hHHHHHHHHHHHHHHHhhc
Q 013262          205 LL--LLPITMIVLLIAKTVGDSF  225 (447)
Q Consensus       205 ~~--~~~p~~ia~~va~~v~~~l  225 (447)
                      +.  .+.|+++++++++.+++.+
T Consensus       178 ~~~~~~~p~~ias~~a~~v~~~~  200 (418)
T PRK01610        178 LMLASLGPVVISAVVALLTTNLL  200 (418)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHH
Confidence            43  6889999999999999876

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=98.67  E-value=2.3e-07  Score=94.18  Aligned_cols=128  Identities=16%  Similarity=0.208  Sum_probs=98.8

Q ss_pred             CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262          264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF  343 (447)
Q Consensus       264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~  343 (447)
                      ++..+.+++++.++++.|.+.+.+++|||+..           ++.+|.+++.|+..+.....+.....         . 
T Consensus       238 ~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~-----------g~~v~~~s~~Dv~~l~~~~~~~~~~~---------~-  296 (381)
T KOG1764|consen  238 NIASISEDTPVIEALKIMSERRISALPVVDEN-----------GKKVGNYSRFDVIHLAREGTYNNLDL---------S-  296 (381)
T ss_pred             hheeecCCCcHHHHHHHHHhcCcCcceEEcCC-----------CceecceehhhhhhhhhcCccCccch---------h-
Confidence            57889999999999999999999999999987           77799999999988766543322110         0 


Q ss_pred             hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262          344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR  423 (447)
Q Consensus       344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr  423 (447)
                      ....                    ....++.-....+++.++.+|.++++.+...+.+++.|||+     +|+++|+||.
T Consensus       297 ~l~~--------------------~~~~~~~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~-----~~~l~GvvSL  351 (381)
T KOG1764|consen  297 CLSE--------------------ALSHRPIRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDE-----DGVLVGVISL  351 (381)
T ss_pred             HHHH--------------------HhhhcccccCccEEEeecchHHHHHHHHHhcCceEEEEEcC-----CCcEEEEeeH
Confidence            0000                    01111121233589999999999999999999999999997     5789999999


Q ss_pred             HHHHHHHHhhhcCc
Q 013262          424 QDLRAFNILTAFPH  437 (447)
Q Consensus       424 ~DLl~~~~~~~~~~  437 (447)
                      .|++.+...+....
T Consensus       352 sDil~~l~~~p~~~  365 (381)
T KOG1764|consen  352 SDILSYLVLTPSGG  365 (381)
T ss_pred             HHHHHHHHhCccCC
Confidence            99999988765433

>cd01036 ClC_euk Chloride channel, ClC

Probab=98.64  E-value=8.9e-08  Score=98.88  Aligned_cols=100  Identities=19%  Similarity=0.187  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHhhcc------------CCcchHHHHHHHHHHHHHhhhchhHH
Q 013262          126 FILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSY------------TNIDQGLYAVLGAASLMAGSMRMTVS  193 (447)
Q Consensus       126 ~~~k~~~~~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~------------~~~~~~~~a~~G~aa~~~g~~~~p~s  193 (447)
                      ++.|++.+.+++|+|.|.|...|+..+||++|..+++..+..            ...+...+..+|+||.++++.++|++
T Consensus        88 ~~~K~i~~~l~igsG~svGrEGP~V~iGa~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~r~ll~aGaaAGlaAaF~APia  167 (416)
T cd01036          88 LIAKTISCICAVASGLPLGKEGPLVHLGAMIGAGLLQGRSRTLGCHVHLFQLFRNPRDRRDFLVAGAAAGVASAFGAPIG  167 (416)
T ss_pred             HHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHhhcccccccccchhhhccCHHHHHHHHHHHhhcchhhccCCcce
Confidence            458999999999999999999999999999999999976531            12345678999999999999999999


Q ss_pred             HHHHHHHhhcC-C--chHHHHHHHHHHHHHHHhhc
Q 013262          194 LCVIFLELTNN-L--LLLPITMIVLLIAKTVGDSF  225 (447)
Q Consensus       194 ~~vi~~E~t~~-~--~~~~p~~ia~~va~~v~~~l  225 (447)
                      ++++.+|.+.. +  ..+.|.++++++|..+.+.+
T Consensus       168 GvlFalE~~~~~~~~~~~~~~~~as~~a~~v~~~~  202 (416)
T cd01036         168 GLLFVLEEVSTFFPVRLAWRVFFAALVSAFVIQIY  202 (416)
T ss_pred             eeeeeeHHhhccccHHHHHHHHHHHHHHHHHHHHh
Confidence            99999998754 2  36789999999999888766

These domains are found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins that perform a variety of functions including cell volume regulation, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles, signal transduction and transepithelial transport. They are also involved in many pathophysiological processes and are responsible for a number of human diseases. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. Some proteins possess long C-terminal cytoplasmic regions containing two CBS (cystathionine beta synthase) domains of putative regulatory function.

>cd03685 ClC_6_like ClC-6-like chloride channel proteins

Probab=98.63  E-value=5.1e-08  Score=101.96  Aligned_cols=122  Identities=15%  Similarity=0.126  Sum_probs=89.5

Q ss_pred             CChHHHHHHHhcCCC-CCCcchHHHHHHHHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHhh-----------c
Q 013262           99 TTNDDAVRNIFSSNT-PTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMG-----------S  166 (447)
Q Consensus        99 ~~~~~~i~~l~~~~~-~~~~~~~~l~~~~~~k~~~~~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~-----------~  166 (447)
                      ++|-..++..+++.. ...+++.    .++.|++.+.+++|+|.|.|.+.|+..+||++|..+++...           .
T Consensus       105 GsGip~v~~~l~g~~~~~~l~~r----~~~~K~i~~~l~vgsG~s~GrEGP~v~iGa~ig~~~~~~~~~~~~~~~~~~~~  180 (466)
T cd03685         105 GSGIPEVKGYLNGVKIPHILRLK----TLLVKIVGVILSVSGGLALGKEGPMIHIGACIAAGLSQGGSTSLRLDFRWFRY  180 (466)
T ss_pred             CCCHHHHHHHHcCcCccccchHH----HHHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHhhccccccccchhhhhh
Confidence            456666777766422 1112233    34589999999999999999999999999999999997431           1


Q ss_pred             c-CCcchHHHHHHHHHHHHHhhhchhHHHHHHHHHhhcC---CchHHHHHHHHHHHHHHHhh
Q 013262          167 Y-TNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNN---LLLLPITMIVLLIAKTVGDS  224 (447)
Q Consensus       167 ~-~~~~~~~~a~~G~aa~~~g~~~~p~s~~vi~~E~t~~---~~~~~p~~ia~~va~~v~~~  224 (447)
                      . ...+-..+..+||||.++++.++|++++++.+|.++.   .....+.++++++|..+++.
T Consensus       181 ~~~~~~~r~li~~GaAAGlaaaF~APl~G~lFa~E~l~~~~~~~~~~~~l~~s~ias~va~~  242 (466)
T cd03685         181 FRNDRDKRDFVTCGAAAGVAAAFGAPVGGVLFSLEEVASFWNQALTWRTFFSSMIVTFTLNF  242 (466)
T ss_pred             ccCHHHHHHHHHHHhhcchhhccCCCcceeeeeeehhhhhcchhHHHHHHHHHHHHHHHHHH
Confidence            1 1234456899999999999999999999999998763   23555666666666666554

This CD includes ClC-6, ClC-7 and ClC-B, C, D in plants. Proteins in this family are ubiquitous in eukarotes and their functions are unclear. They are expressed in intracellular organelles membranes. This family belongs to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. ClC chloride ion channel superfamily perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, and transepithelial transport in animals.

>cd01034 EriC_like ClC chloride channel family

Probab=98.59  E-value=3.6e-07  Score=93.62  Aligned_cols=100  Identities=14%  Similarity=0.134  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHhhhchhHHHHHHHHHhhcCC
Q 013262          126 FILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNL  205 (447)
Q Consensus       126 ~~~k~~~~~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~~~~~~a~~G~aa~~~g~~~~p~s~~vi~~E~t~~~  205 (447)
                      .+.|++.+.+|+|+|.|.|...|+..+||++|..+++.++.....+-.....+|+||.++++.++|++++++.+|.....
T Consensus        80 ~~~k~i~~~l~i~~G~s~GrEGP~v~iga~i~~~~~~~~~~~~~~~~r~li~~GaaAGlaa~F~aPlaG~lF~~E~~~~~  159 (390)
T cd01034          80 AVGKILLTLLGLLGGASVGREGPSVQIGAAVMLAIGRRLPKWGGLSERGLILAGGAAGLAAAFNTPLAGIVFAIEELSRD  159 (390)
T ss_pred             HHHHHHHHHHHHHcCCCcCCcccHHHHHHHHHHHHHHHcccCchHHHHHHHHHHHHHhHHHHhCCcchhHHHHHHHhhhh
Confidence            44899999999999999999999999999999999998875323455678999999999999999999999999976542


Q ss_pred             ---chHHHHHHHHHHHHHHHhhc
Q 013262          206 ---LLLPITMIVLLIAKTVGDSF  225 (447)
Q Consensus       206 ---~~~~p~~ia~~va~~v~~~l  225 (447)
                         ....|++++++++.+++..+
T Consensus       160 ~~~~~~~~~~~~~~~a~~~~~~~  182 (390)
T cd01034         160 FELRFSGLVLLAVIAAGLVSLAV  182 (390)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHH
Confidence               36677888888888877654

These protein sequences, closely related to the ClC Eric family, are putative halogen ion (Cl-, Br- and I-) transport proteins found in eubacteria. They belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.

>cd01033 ClC_like Putative ClC chloride channel

Probab=98.59  E-value=2.1e-07  Score=95.19  Aligned_cols=97  Identities=16%  Similarity=0.210  Sum_probs=85.0

Q ss_pred             HHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHhhhchhHHHHHHHHHhhc-CC-
Q 013262          128 LYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTN-NL-  205 (447)
Q Consensus       128 ~k~~~~~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~~~~~~a~~G~aa~~~g~~~~p~s~~vi~~E~t~-~~-  205 (447)
                      .|++++.+|+|+|.+.|...|+..+||++|..+++.++.. ..+...+..+|+||.++++.++|++++++.+|... ++ 
T Consensus        87 ~k~~~~~l~ig~G~s~G~EGP~v~iGa~i~~~~~~~~~~~-~~~~r~li~~GaaAGlaa~F~aPlaG~lFalE~~~~~~~  165 (388)
T cd01033          87 IHAVLQIVTVGLGAPLGREVAPREVGALLAQRFSDWLGLT-VADRRLLVACAAGAGLAAVYNVPLAGALFALEILLRTIS  165 (388)
T ss_pred             HHHHHHHhhhhcCCCcCcccHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcc
Confidence            6999999999999999999999999999999999988642 23445788999999999999999999999999753 33 


Q ss_pred             -chHHHHHHHHHHHHHHHhhc
Q 013262          206 -LLLPITMIVLLIAKTVGDSF  225 (447)
Q Consensus       206 -~~~~p~~ia~~va~~v~~~l  225 (447)
                       ..+.|.++++++|+.+++.+
T Consensus       166 ~~~~~~~~~as~~a~~v~~~~  186 (388)
T cd01033         166 LRSVVAALATSAIAAAVASLL  186 (388)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh
Confidence             36889999999999988876

Clc proteins are putative halogen ion (Cl-, Br- and I-) transporters found in eubacteria. They belong to the ClC superfamily of halogen ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=98.54  E-value=2.3e-07  Score=91.53  Aligned_cols=119  Identities=18%  Similarity=0.338  Sum_probs=95.9

Q ss_pred             CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262          264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF  343 (447)
Q Consensus       264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~  343 (447)
                      +++++.|+.++.++++.-..+++.++||.++.        .-..+|+|+|+.+|+..+ +.                   
T Consensus       117 ~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g--------~~~~KLvG~vtsrdi~f~-~~-------------------  168 (503)
T KOG2550|consen  117 NPIVISPTTTVGEVKEAKEKHGFSGIPVTEDG--------KRGSKLVGIITSRDIQFL-ED-------------------  168 (503)
T ss_pred             CCcccCCcccchhhhhhcccccccccccccCC--------cccceeEEEEehhhhhhh-hc-------------------
Confidence            44678999999999999999999999999765        233789999999998442 11                   


Q ss_pred             hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262          344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR  423 (447)
Q Consensus       344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr  423 (447)
                                             ....++++|.+.+++.+...+++++-+++++.....+||||+     +++++-+|+|
T Consensus       169 -----------------------~~~~~~~vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~-----~gelva~~~r  220 (503)
T KOG2550|consen  169 -----------------------NSLLVSDVMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDD-----KGELVAMLSR  220 (503)
T ss_pred             -----------------------ccchhhhhcccccccccccccHHHHHHHHHhhhcCCcceecc-----CCceeeeeeh
Confidence                                   113356778888899999999999999999999999999998     5679999999


Q ss_pred             HHHHHHHHhhhcCccccc
Q 013262          424 QDLRAFNILTAFPHLERS  441 (447)
Q Consensus       424 ~DLl~~~~~~~~~~~~~~  441 (447)
                      .||.+.   +-++..+++
T Consensus       221 tDl~k~---~~yPlask~  235 (503)
T KOG2550|consen  221 TDLMKN---RDYPLASKD  235 (503)
T ss_pred             hhhhhh---cCCCccccC
Confidence            999874   334444443

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=98.51  E-value=1.5e-06  Score=87.93  Aligned_cols=109  Identities=21%  Similarity=0.225  Sum_probs=87.3

Q ss_pred             eeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcch
Q 013262          265 VITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFS  344 (447)
Q Consensus       265 vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~~  344 (447)
                      .....++.+..++++.+...+.+...|+|++           +++.|.|+.+++...+....                  
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~g~~~~~~~~~~~~~~~------------------  302 (363)
T TIGR01186       252 PITKTADKGPRSALQLMRDERVDSLYVVDRQ-----------NKLVGVVDVESIKQARKKAQ------------------  302 (363)
T ss_pred             ceeecCCCCHHHHHHHHHhcCCceEEEEcCC-----------CCEEEEEeHHHHHHHhhcCC------------------
Confidence            3445667788999999998888888899987           89999999998865433210                  


Q ss_pred             HHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHH
Q 013262          345 WVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQ  424 (447)
Q Consensus       345 ~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~  424 (447)
                                               .+.+.+.....++++++++.+++..|.+.+.. +||+|+     +|+++|+||+.
T Consensus       303 -------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~-----~~~~~g~i~~~  351 (363)
T TIGR01186       303 -------------------------GLQDVLIDDIYTVDAGTLLRETVRKVLKAGIK-VPVVDE-----DQRLVGIVTRG  351 (363)
T ss_pred             -------------------------chhhhhccCCceECCCCcHHHHHHHHHhCCCC-EEEECC-----CCcEEEEEEHH
Confidence                                     12223446667899999999999999999998 999997     67899999999


Q ss_pred             HHHHHHHhh
Q 013262          425 DLRAFNILT  433 (447)
Q Consensus       425 DLl~~~~~~  433 (447)
                      +++++..+.
T Consensus       352 ~~~~~~~~~  360 (363)
T TIGR01186       352 SLVDALYDS  360 (363)
T ss_pred             HHHHHHHhh
Confidence            999987654

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>cd03684 ClC_3_like ClC-3-like chloride channel proteins

Probab=98.48  E-value=7.2e-07  Score=92.88  Aligned_cols=100  Identities=13%  Similarity=0.131  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHhhcc--CCcchHHHHHHHHHHHHHhhhchhHHHHHHHHHhh-
Q 013262          126 FILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSY--TNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELT-  202 (447)
Q Consensus       126 ~~~k~~~~~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~--~~~~~~~~a~~G~aa~~~g~~~~p~s~~vi~~E~t-  202 (447)
                      ++.|++.+.+++|+|.|.|...|+..+||++|..++++++..  ...+-..+..+|+||.++++.++|++++++.+|.. 
T Consensus        79 ~~~k~l~~~l~i~~G~s~GrEGP~v~iGa~ia~~l~~~~~~~~~~~~~~r~li~~GaaAGlaAaF~APi~G~lFalE~l~  158 (445)
T cd03684          79 LLIKSVGLVLAVASGLSLGKEGPLVHIATCVGNIISRLFPKYRRNEAKRREILSAAAAAGVAVAFGAPIGGVLFSLEEVS  158 (445)
T ss_pred             HHHHHHhhHHhhccCCcCCCCCCcchHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhHHhcCCccchhhhhhHhhh
Confidence            448999999999999999999999999999999999987532  23445678899999999999999999999999954 


Q ss_pred             cCCc--hHHHHHHHHHHHHHHHhhc
Q 013262          203 NNLL--LLPITMIVLLIAKTVGDSF  225 (447)
Q Consensus       203 ~~~~--~~~p~~ia~~va~~v~~~l  225 (447)
                      ..++  .+.|.++++++|..+.+.+
T Consensus       159 ~~~~~~~l~~~~~as~~a~~v~~~~  183 (445)
T cd03684         159 YYFPLKTLWRSFFCALVAAFTLKSL  183 (445)
T ss_pred             hhccHHHHHHHHHHHHHHHHHHHHh
Confidence            4443  6788999999999888754

This CD includes ClC-3, ClC-4, ClC-5 and ClC-Y1. ClC-3 was initially cloned from rat kidney. Expression of ClC-3 produces outwardly-rectifying Cl currents that are inhibited by protein kinase C activation. It has been suggested that ClC-3 may be a ubiquitous swelling-activated Cl channel that has very similar characteristics to those of native volume-regulated Cl currents. The function of ClC-4 is unclear. Studies of human ClC-4 have revealed that it gives rise to Cl currents that rapidly activate at positive voltages, and are sensitive to extracellular pH, with currents decreasing when pH falls below 6.5. ClC-4 is broadly distributed, especially in brain and heart. ClC-5 is predominantly expressed in the kidney, but can be found in the brain and liver. Mutations in the ClC-5 gene cause certain hereditary diseases, including Dent's disease, an X-chromosome linked syndrome characterised by proteinuria, hypercalciuria, and kidn

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=98.48  E-value=1.6e-06  Score=88.78  Aligned_cols=121  Identities=16%  Similarity=0.149  Sum_probs=92.5

Q ss_pred             ccccccccCCCC-eeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhc
Q 013262          253 LTVGELIDAKPP-VITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEK  331 (447)
Q Consensus       253 l~v~diM~~~~~-vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~  331 (447)
                      +++.++|.+... .+...+..+..++++.|...+.+...|+|++           ++++|+|+.+++.......      
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~g~~~~~~~~~~~~~~------  336 (400)
T PRK10070        274 FSAKDIARRTPNGLIRKTPGFGPRSALKLLQDEDREYGYVIERG-----------NKFVGAVSIDSLKTALTQQ------  336 (400)
T ss_pred             cchhhhhhcCcccccccCCCCCHHHHHHHHHhcCCceEEEEcCC-----------CcEEEEEeHHHHHhhhhcC------
Confidence            567788854111 1223456688999999999999999999987           8999999999996533210      


Q ss_pred             ccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCccc
Q 013262          332 RRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEA  411 (447)
Q Consensus       332 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~  411 (447)
                                                           ..+.+.+.....++.+++++.+++..+.+.... +||||+   
T Consensus       337 -------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~---  375 (400)
T PRK10070        337 -------------------------------------QGLDAALIDAPLAVDAQTPLSELLSHVGQAPCA-VPVVDE---  375 (400)
T ss_pred             -------------------------------------CchhhhhccCCceeCCCCCHHHHHHHHHhCCCc-EEEECC---
Confidence                                                 012223445667899999999999999997776 999997   


Q ss_pred             CCCCcEEEEEeHHHHHHHHHhh
Q 013262          412 AGVSPVVGILTRQDLRAFNILT  433 (447)
Q Consensus       412 ~g~~~lvGIITr~DLl~~~~~~  433 (447)
                        +++++|+||+.+++++....
T Consensus       376 --~~~~~g~~~~~~~~~~~~~~  395 (400)
T PRK10070        376 --DQQYVGIISKGMLLRALDRE  395 (400)
T ss_pred             --CCcEEEEEEHHHHHHHHHhc
Confidence              67899999999999987654

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=98.33  E-value=5.9e-07  Score=85.35  Aligned_cols=57  Identities=23%  Similarity=0.307  Sum_probs=52.1

Q ss_pred             cCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHH
Q 013262          369 IDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFN  430 (447)
Q Consensus       369 idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~  430 (447)
                      ++-.++|.++.+++++++++++|.+++.+++++.+||+|+     +.+++||||+.|+++..
T Consensus       245 LtcadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~-----~~rl~GiVt~~dl~~~a  301 (382)
T COG3448         245 LTCADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDE-----HRRLVGIVTQRDLLKHA  301 (382)
T ss_pred             ccHHHhcCccceecCCcCChHHHHHHHHHcCccccccccc-----ccceeeeeeHHHHhhcc
Confidence            4556789999999999999999999999999999999998     67899999999999843

>PRK03655 putative ion channel protein; Provisional

Probab=98.31  E-value=5.3e-06  Score=85.47  Aligned_cols=97  Identities=13%  Similarity=0.156  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHhhhchhHHHHHHHHHh-hcC
Q 013262          126 FILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLEL-TNN  204 (447)
Q Consensus       126 ~~~k~~~~~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~~~~~~a~~G~aa~~~g~~~~p~s~~vi~~E~-t~~  204 (447)
                      ...|++++.+++++|.+.|...|+..+||++|..+|+.+..  ..+.....++|+||-++++.++|++++++.+|. .++
T Consensus       100 ~~~~~~~~~l~l~~G~S~GrEGP~VqiGa~igs~~~r~~~~--~~~~~~l~~~gaAaGiaAaFnaPLaG~lFa~E~l~~~  177 (414)
T PRK03655        100 LPGLLLALILGLAGGVSLGPEHPIMTVNIALAVAIGARLLP--RVNRMDWTILASAGTIGALFGTPVAAALIFSQTLNGS  177 (414)
T ss_pred             HHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHhcc--CCChhHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHh
Confidence            45789999999999999999999999999999999987732  134445778999999999999999999999995 565


Q ss_pred             Cc------hHHHHHHHHHHHHHHHhhc
Q 013262          205 LL------LLPITMIVLLIAKTVGDSF  225 (447)
Q Consensus       205 ~~------~~~p~~ia~~va~~v~~~l  225 (447)
                      +.      .++|+ +++.++..+...+
T Consensus       178 ~~~~~~~~~~~~v-~aa~~a~~v~~~~  203 (414)
T PRK03655        178 NEVPLWDRLFAPL-MAAAAGALTTGLF  203 (414)
T ss_pred             hhHHHHHHHHHHH-HHHHHHHHHHHHh
Confidence            54      35554 3444566665544

>cd03683 ClC_1_like ClC-1-like chloride channel proteins

Probab=98.30  E-value=6.2e-07  Score=92.91  Aligned_cols=99  Identities=12%  Similarity=0.028  Sum_probs=82.3

Q ss_pred             HHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHhhcc-----CCcchHHHHHHHHHHHHHhhhchhHHHHHHHHH
Q 013262          126 FILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSY-----TNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLE  200 (447)
Q Consensus       126 ~~~k~~~~~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~-----~~~~~~~~a~~G~aa~~~g~~~~p~s~~vi~~E  200 (447)
                      ++.|++.+.+++|+|.|.|...|+..+||++|..+++..+..     ...+-..+..+|+||.++++.++|++++++.+|
T Consensus        96 ~~~k~i~~~l~i~sG~svGrEGP~v~iGa~i~~~~~~~~~~~~~~~~~~~~rr~Li~~GaaAGlaAaF~APlaGvlFalE  175 (426)
T cd03683          96 LVAKVIGLTCALGSGLPLGKEGPFVHISSIVAALLSKLTTFFSGIYENESRRMEMLAAACAVGVACTFGAPIGGVLFSIE  175 (426)
T ss_pred             HHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHhhcccccccccCHHHHHHHHHhHhhhhhHHhcCCcceeeEEEee
Confidence            448999999999999999999999999999999999987531     112223588999999999999999999999999


Q ss_pred             hhcC-C--chHHHHHHHHHHHHHHHhh
Q 013262          201 LTNN-L--LLLPITMIVLLIAKTVGDS  224 (447)
Q Consensus       201 ~t~~-~--~~~~p~~ia~~va~~v~~~  224 (447)
                      .... +  ..+.|.++++++|..+.+.
T Consensus       176 ~l~~~~~~~~~~~~~i~s~~a~~v~~~  202 (426)
T cd03683         176 VTSTYFAVRNYWRGFFAATCGAFTFRL  202 (426)
T ss_pred             hhhhhccHHHHHHHHHHHHHHHHHHHH
Confidence            7543 3  3667888888888877664

This CD includes isoforms ClC-0, ClC-1, ClC-2 and ClC_K. ClC-1 is expressed in skeletal muscle and its mutation leads to both recessively and dominantly-inherited forms of muscle stiffness or myotonia. ClC-K is exclusively expressed in kidney. Similarly, mutation of ClC-K leads to nephrogenic diabetes insipidus in mice and Bartter's syndrome in human. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. This domain is found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins, that perform a variety of functions including cell volume regulation, regulation of intracelluar chloride concentration, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles and transepithelia

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=98.20  E-value=3.4e-06  Score=70.76  Aligned_cols=54  Identities=17%  Similarity=0.313  Sum_probs=50.2

Q ss_pred             ccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHH
Q 013262          253 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLV  319 (447)
Q Consensus       253 l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~  319 (447)
                      .+++|+|.+  ++.++++++++.++++.|.+.++..+||+|++           ++++|+|+.+||.
T Consensus        58 ~~v~dim~~--~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-----------~~l~Givt~~dl~  111 (113)
T cd04597          58 PRVRDVINR--KPVTARPNDPLREALNLMHEHNIRTLPVVDDD-----------GTPAGIITLLDLA  111 (113)
T ss_pred             hhHHHhcCC--CCCEECCcCcHHHHHHHHHHcCCCEEEEECCC-----------CeEEEEEEHHHhh
Confidence            779999998  88899999999999999999999999999987           8999999999985

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=98.12  E-value=1.2e-06  Score=91.50  Aligned_cols=113  Identities=11%  Similarity=0.212  Sum_probs=89.1

Q ss_pred             ccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcc
Q 013262          253 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKR  332 (447)
Q Consensus       253 l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~  332 (447)
                      .+++++|++  ++.++++++++.++.+.|+++++..+||||++           |+++|+|+.+|+.+.+.+..      
T Consensus       195 ~~v~~im~~--~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~-----------g~lvGiIt~~Dil~~l~~~~------  255 (449)
T TIGR00400       195 EILSSIMRS--SVFSIVGVNDQEEVARLIQKYDFLAVPVVDNE-----------GRLVGIVTVDDIIDVIQSEA------  255 (449)
T ss_pred             CcHHHHhCC--CCeeECCCCCHHHHHHHHHHcCCCEEeEEcCC-----------CeEEEEEEHHHHHHHHHhhh------
Confidence            468999998  88899999999999999999999999999987           89999999999988765421      


Q ss_pred             cchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccC
Q 013262          333 RTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAA  412 (447)
Q Consensus       333 ~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~  412 (447)
                                  .+|                          +|....++..+++.+..+...+.+.++.+++|.-     
T Consensus       256 ------------~ed--------------------------~~~~~gv~~~~~~~l~~~~~~~~~~R~~wL~v~~-----  292 (449)
T TIGR00400       256 ------------TED--------------------------FYMIAAVKPLDDSYFDTSILVMAKNRIIWLLVLL-----  292 (449)
T ss_pred             ------------HHH--------------------------HHHhcCCCCCcchhhhchHHHHHHhccchHHHHH-----
Confidence                        012                          2223333444567888989999999999998862     


Q ss_pred             CCCcEEEEEeHHHHHHHHHh
Q 013262          413 GVSPVVGILTRQDLRAFNIL  432 (447)
Q Consensus       413 g~~~lvGIITr~DLl~~~~~  432 (447)
                          +.|++| ..++..+.+
T Consensus       293 ----~~~~~t-~~ii~~f~~  307 (449)
T TIGR00400       293 ----VSSTFT-ATIISNYED  307 (449)
T ss_pred             ----HHHHHH-HHHHHHHHH
Confidence                788888 777776554

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=98.05  E-value=9.6e-07  Score=94.53  Aligned_cols=160  Identities=17%  Similarity=0.270  Sum_probs=104.7

Q ss_pred             HhhCCCCCCCCCC------ccccccccccccc-CCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCc
Q 013262          235 ELKGLPFLDAHPE------PWMRTLTVGELID-AKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVAT  307 (447)
Q Consensus       235 ~~kg~p~l~~~~~------~~l~~l~v~diM~-~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~  307 (447)
                      +.+|+|.+..+..      ......+|+++|+ +  +++++++++++.++.+.|.+++++.+||||++           |
T Consensus       222 ~~~~i~ii~t~~dt~~t~~~l~~~~~V~~iM~~~--~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~-----------g  288 (546)
T PRK14869        222 KENGVTVISTPYDTFTTARLINQSIPVSYIMTTE--DLVTFSKDDYLEDVKEVMLKSRYRSYPVVDED-----------G  288 (546)
T ss_pred             HhCCCeEEEecccHHHHHHHhhcCCCHHHhccCC--CcEEECCCCcHHHHHHHHHhcCCCceEEEcCC-----------C
Confidence            4567776543321      1234678999999 7  89999999999999999999999999999987           8


Q ss_pred             eEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCcee---cC
Q 013262          308 ELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTV---IE  384 (447)
Q Consensus       308 ~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV---~~  384 (447)
                      +++|+|+++|+.....++...-+..     +..  .....+.+  ..+  ..+.    + +-.+..++...|+.+   +.
T Consensus       289 ~lvGiit~~dl~~~~~~~~iLVD~~-----e~~--q~~~~~~~--~~i--~~ii----D-HH~~~~~~~~~pi~~~~~~~  352 (546)
T PRK14869        289 KVVGVISRYHLLSPVRKKVILVDHN-----EKS--QAVEGIEE--AEI--LEII----D-HHRLGDIQTSNPIFFRNEPV  352 (546)
T ss_pred             CEEEEEEHHHhhccccCceEEEcCc-----ccc--ccccchhh--ceE--EEEe----c-CCccCCCCCCCCcEEEeeee
Confidence            9999999999987543322111000     000  00000000  000  0000    0 112445666677655   34


Q ss_pred             CCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHH
Q 013262          385 SMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAF  429 (447)
Q Consensus       385 ~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~  429 (447)
                      .++...+.++|++.+....|++..      ..+.||+|..+.+++
T Consensus       353 gst~tiv~~~~~~~~i~~~~~ia~------~ll~gIlsDT~~f~~  391 (546)
T PRK14869        353 GSTSTIVARMYRENGIEPSPEIAG------LLLAAILSDTLLFKS  391 (546)
T ss_pred             eeHHHHHHHHHHHcCCCCCHHHHH------HHHHHHHHHhcCccC
Confidence            667788999999999998888864      458999998887754

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=98.01  E-value=9.9e-06  Score=67.91  Aligned_cols=55  Identities=25%  Similarity=0.314  Sum_probs=49.3

Q ss_pred             cCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHH
Q 013262          369 IDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRA  428 (447)
Q Consensus       369 idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~  428 (447)
                      ..++++|.+.+.++++++++.++++.|.+.+.+.+||+|+     +++++|+||++|+.+
T Consensus        58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~-----~~~l~Givt~~dl~~  112 (113)
T cd04597          58 PRVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDD-----DGTPAGIITLLDLAE  112 (113)
T ss_pred             hhHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECC-----CCeEEEEEEHHHhhc
Confidence            3467788888999999999999999999999999999987     568999999999864

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=97.91  E-value=2.1e-05  Score=65.17  Aligned_cols=55  Identities=27%  Similarity=0.338  Sum_probs=50.2

Q ss_pred             ccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHH
Q 013262          253 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL  320 (447)
Q Consensus       253 l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~  320 (447)
                      .+++++|..  ++.++++++++.++++.|.+++.+.+||+|++           ++++|+|+++|+++
T Consensus        56 ~~v~~~~~~--~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~-----------~~~~Giit~~di~~  110 (111)
T cd04603          56 LKVCEVYIV--PVPIVYCDSKVTDLLRIFRETEPPVVAVVDKE-----------GKLVGTIYERELLR  110 (111)
T ss_pred             cChhheeec--CCcEECCCCcHHHHHHHHHHcCCCeEEEEcCC-----------CeEEEEEEhHHhhc
Confidence            468899988  78899999999999999999999999999987           89999999999864

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=97.87  E-value=1.7e-05  Score=69.01  Aligned_cols=61  Identities=21%  Similarity=0.301  Sum_probs=55.1

Q ss_pred             ccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHHHhhh
Q 013262          368 YIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTA  434 (447)
Q Consensus       368 ~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~~~~~  434 (447)
                      .+..+.+|+++.+.+.|++++.++.++|++.|+.++||+++      ++++|-||..|+.+...+..
T Consensus        64 ~ita~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~------~k~VGsItE~~iv~~~le~~  124 (187)
T COG3620          64 RITAKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE------DKVVGSITENDIVRALLEGM  124 (187)
T ss_pred             eEeHhhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeC------CeeeeeecHHHHHHHHhccc
Confidence            44567799999999999999999999999999999999985      68999999999999887664

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=97.85  E-value=2.6e-05  Score=73.13  Aligned_cols=59  Identities=17%  Similarity=0.303  Sum_probs=54.9

Q ss_pred             cccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHH
Q 013262          252 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALK  323 (447)
Q Consensus       252 ~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~  323 (447)
                      +.+|+|+|++  +++++++++.+.|++++|..++...+-|+|++           |+.+|+|||.|++..+.
T Consensus       233 ~~kV~~~M~k--~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~-----------gkpvGiITrTDIL~~ia  291 (294)
T COG2524         233 DAKVSDYMRK--NVITINEDEDIYDAIRLMNKNNVGRLLVTDSN-----------GKPVGIITRTDILTRIA  291 (294)
T ss_pred             cccHHHHhcc--CCceEcCchhHHHHHHHHHhcCcceEEEEccC-----------CcEEEEEehHHHHHHhh
Confidence            5789999999  99999999999999999999999999999987           99999999999987553

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.84  E-value=2.8e-05  Score=64.70  Aligned_cols=56  Identities=16%  Similarity=0.278  Sum_probs=50.7

Q ss_pred             cccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHH
Q 013262          252 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL  320 (447)
Q Consensus       252 ~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~  320 (447)
                      ..+++++|.+  ++.++++++++.++++.|.+++.+.+||+|++           ++++|+|+++|+.+
T Consensus        58 ~~~v~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-----------~~~~Gvi~~~dl~~  113 (114)
T cd04619          58 TAPVENVMTR--AVVSCRPGDLLHDVWQVMKQRGLKNIPVVDEN-----------ARPLGVLNARDALK  113 (114)
T ss_pred             cCCHHHHhcC--CCeeECCCCCHHHHHHHHHHcCCCeEEEECCC-----------CcEEEEEEhHhhcc
Confidence            3568899988  88899999999999999999999999999986           89999999999853

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.72  E-value=9.9e-05  Score=61.91  Aligned_cols=49  Identities=14%  Similarity=0.157  Sum_probs=43.8

Q ss_pred             CCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHHH
Q 013262          378 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI  431 (447)
Q Consensus       378 ~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~~  431 (447)
                      ++.++++++++.++.++|.+.+.+.+||+|+     +++++|++|++|+++...
T Consensus         2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~-----~~~~~Giv~~~dl~~~~~   50 (120)
T cd04641           2 NIATARPDTPLIDVLDMLVERRVSALPIVDE-----NGKVVDVYSRFDVINLAK   50 (120)
T ss_pred             CcEEEcCCCCHHHHHHHHHHcCCCeeeEECC-----CCeEEEEEeHHHHHHHHh
Confidence            4568899999999999999999999999986     567999999999997654

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.67  E-value=0.0001  Score=60.04  Aligned_cols=48  Identities=21%  Similarity=0.189  Sum_probs=42.3

Q ss_pred             CceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHH
Q 013262          379 PYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFN  430 (447)
Q Consensus       379 p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~  430 (447)
                      ++++++++++.++.++|.+.+.+.+||+|+   + +++++|+||++|+.+..
T Consensus         3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~---~-~~~~~Givt~~Dl~~~~   50 (98)
T cd04618           3 LVVFDTKLPVKKAFNALVENGIRSAPLWDS---R-KQQFVGMLTITDFILIL   50 (98)
T ss_pred             EEEECCCCcHHHHHHHHHHcCCceEEEEeC---C-CCEEEEEEEHHHHhhhe
Confidence            468999999999999999999999999986   2 26799999999998754

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=97.62  E-value=0.00011  Score=60.77  Aligned_cols=54  Identities=24%  Similarity=0.333  Sum_probs=49.1

Q ss_pred             ccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHH
Q 013262          253 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLV  319 (447)
Q Consensus       253 l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~  319 (447)
                      .+++++|.+  ++.++++++++.++++.|.+++.+.+||++++           ++++|+|+++|++
T Consensus        58 ~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-----------~~~~Gvit~~di~  111 (113)
T cd04607          58 DPVSEVMNR--NPITAKVGSSREEILALMRERSIRHLPILDEE-----------GRVVGLATLDDLL  111 (113)
T ss_pred             CCHHHhhcC--CCEEEcCCCCHHHHHHHHHHCCCCEEEEECCC-----------CCEEEEEEhHHhc
Confidence            457899988  88899999999999999999999999999976           8899999999985

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=97.62  E-value=0.00018  Score=49.02  Aligned_cols=46  Identities=35%  Similarity=0.499  Sum_probs=41.0

Q ss_pred             CceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHH
Q 013262          379 PYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAF  429 (447)
Q Consensus       379 p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~  429 (447)
                      +.++.+++++.++.+.|.+.+.+++||+++     +++++|+++++|+.+.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-----~~~~~g~i~~~~l~~~   47 (49)
T smart00116        2 VVTVSPDTTLEEALELLREHGIRRLPVVDE-----EGRLVGIVTRRDIIKA   47 (49)
T ss_pred             ceEecCCCcHHHHHHHHHHhCCCcccEECC-----CCeEEEEEEHHHHHHh
Confidence            457889999999999999999999999986     4679999999999764

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=97.61  E-value=9.6e-05  Score=62.10  Aligned_cols=56  Identities=29%  Similarity=0.573  Sum_probs=50.7

Q ss_pred             cccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHH
Q 013262          252 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL  320 (447)
Q Consensus       252 ~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~  320 (447)
                      ..+++++|.+  ++.++++++++.++++.|.+.+.+.+||+|++           ++++|+|+++|+..
T Consensus        68 ~~~i~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~-----------g~~~Gvit~~di~~  123 (124)
T cd04600          68 PETVGDIMSP--PVVTVRPDTPIAELVPLLADGGHHHVPVVDED-----------RRLVGIVTQTDLIA  123 (124)
T ss_pred             cccHHHhccC--CCeeeCCCCcHHHHHHHHHhcCCCceeEEcCC-----------CCEEEEEEhHHhhc
Confidence            4578899988  88999999999999999999999999999976           89999999999864

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=97.58  E-value=0.00023  Score=61.62  Aligned_cols=50  Identities=24%  Similarity=0.238  Sum_probs=44.8

Q ss_pred             CCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHHHh
Q 013262          378 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL  432 (447)
Q Consensus       378 ~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~~~  432 (447)
                      ++.++.+++++.+|.+.|.+.+...+||+|+     +++++|+||.+|++++...
T Consensus         2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~-----~g~l~Givt~~Dl~~~~~~   51 (133)
T cd04592           2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDS-----DDFLEGILTLGDIQRFLFT   51 (133)
T ss_pred             CceEECCCCCHHHHHHHHHHcCCCEEEEECC-----CCeEEEEEEHHHHHHHHhh
Confidence            4578999999999999999999999999997     5789999999999987654

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.57  E-value=0.00013  Score=60.39  Aligned_cols=55  Identities=27%  Similarity=0.521  Sum_probs=48.6

Q ss_pred             ccccccccCCCCeeEecCC--CCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHH
Q 013262          253 LTVGELIDAKPPVITLSGI--EKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL  320 (447)
Q Consensus       253 l~v~diM~~~~~vv~l~~~--~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~  320 (447)
                      .++.++|.+  ++.+++++  +++.++++.|.+++...+||+|++           ++++|+|+++|+++
T Consensus        58 ~~i~~~~~~--~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~-----------~~~~Gvit~~dl~~  114 (115)
T cd04620          58 LPIGEVMTQ--PVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQ-----------GQLIGLVTAESIRQ  114 (115)
T ss_pred             cCHHHhcCC--CcEEEecccccCHHHHHHHHHHhCCceEEEEcCC-----------CCEEEEEEhHHhhc
Confidence            567889987  78888876  689999999999999999999987           89999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=97.56  E-value=0.00014  Score=59.79  Aligned_cols=57  Identities=21%  Similarity=0.380  Sum_probs=50.5

Q ss_pred             cccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHH
Q 013262          252 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLA  321 (447)
Q Consensus       252 ~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~  321 (447)
                      +.+++++|.+  ++..+++++++.++++.+.+.+...+||++++           ++++|+|+++|+++.
T Consensus        52 ~~~v~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~-----------~~~~Gvit~~dll~~  108 (109)
T cd04606          52 DTPVSDIMDT--DVISVSADDDQEEVARLFEKYDLLALPVVDEE-----------GRLVGIITVDDVIDV  108 (109)
T ss_pred             cchHHHHhCC--CCeEEcCCCCHHHHHHHHHHcCCceeeeECCC-----------CcEEEEEEhHHhhhh
Confidence            3468889987  88899999999999999999998999999976           899999999999753

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.53  E-value=0.00026  Score=57.21  Aligned_cols=47  Identities=26%  Similarity=0.290  Sum_probs=42.3

Q ss_pred             CCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHH
Q 013262          378 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAF  429 (447)
Q Consensus       378 ~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~  429 (447)
                      +++++.+++++.++.+.|.+.+.+.+||+|+     +++++|+++.+|+.+.
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~-----~~~~~Giv~~~dl~~~   48 (96)
T cd04614           2 NVPTVWEETPLPVAVRIMELANVKALPVLDD-----DGKLSGIITERDLIAK   48 (96)
T ss_pred             CccEeCCCCcHHHHHHHHHHcCCCeEEEECC-----CCCEEEEEEHHHHhcC
Confidence            5678999999999999999999999999987     5689999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=97.52  E-value=0.00019  Score=59.77  Aligned_cols=57  Identities=23%  Similarity=0.416  Sum_probs=51.2

Q ss_pred             ccccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHH
Q 013262          251 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL  320 (447)
Q Consensus       251 ~~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~  320 (447)
                      ...++.++|.+  ++.++++++++.++++.|.+.+.+.+||++++           ++++|+|++.|+++
T Consensus        65 ~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-----------~~~~Gvvt~~di~~  121 (122)
T cd04585          65 SKIKVSDIMTR--DPITVSPDASVEEAAELMLERKISGLPVVDDQ-----------GRLVGIITESDLFR  121 (122)
T ss_pred             cccCHHHhccC--CCeEeCCCCcHHHHHHHHHHcCCCceeEECCC-----------CcEEEEEEHHHhhh
Confidence            34678899988  88999999999999999999999999999876           89999999999864

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.52  E-value=0.00021  Score=60.23  Aligned_cols=52  Identities=17%  Similarity=0.214  Sum_probs=46.6

Q ss_pred             ccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHH
Q 013262          255 VGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLV  319 (447)
Q Consensus       255 v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~  319 (447)
                      +.++|.+  ++.++++++++.++++.|.+++.+.+||+|++           ++++|+|+.+|+.
T Consensus        70 ~~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-----------~~~vGiit~~di~  121 (123)
T cd04627          70 DLTIGTS--DVISINGDQPLIDALHLMHNEGISSVAVVDNQ-----------GNLIGNISVTDVR  121 (123)
T ss_pred             hcccCcC--CceEeCCCCCHHHHHHHHHHcCCceEEEECCC-----------CcEEEEEeHHHhh
Confidence            3457777  88899999999999999999999999999986           8899999999984

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=97.51  E-value=0.0003  Score=74.22  Aligned_cols=57  Identities=21%  Similarity=0.362  Sum_probs=51.7

Q ss_pred             cccccccc-CCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHH
Q 013262          253 LTVGELID-AKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLAL  322 (447)
Q Consensus       253 l~v~diM~-~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L  322 (447)
                      .+++++|. +  +++++++++++.++++.|.+++.+.+||+|++           ++++|+|+++||++.+
T Consensus       147 ~~V~dim~~~--~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~-----------g~lvGiIT~~DLl~~~  204 (486)
T PRK05567        147 QPVSEVMTKE--RLVTVPEGTTLEEALELLHEHRIEKLPVVDDN-----------GRLKGLITVKDIEKAE  204 (486)
T ss_pred             CcHHHHcCCC--CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-----------CcEEEEEEhHHhhhhh
Confidence            46889998 5  78899999999999999999999999999987           8999999999998754

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=97.51  E-value=0.00019  Score=58.84  Aligned_cols=56  Identities=20%  Similarity=0.334  Sum_probs=50.1

Q ss_pred             cccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHH
Q 013262          252 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL  320 (447)
Q Consensus       252 ~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~  320 (447)
                      +.+++++|.+  ++.++++++++.++.+.|.+.+.+.+||++++           ++++|+|+++|+.+
T Consensus        52 ~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-----------~~~~G~it~~di~~  107 (108)
T cd04596          52 DTTIEKVMTK--NPITVNPKTSVASVAHMMIWEGIEMLPVVDDN-----------KKLLGIISRQDVLK  107 (108)
T ss_pred             cccHHHHhcC--CCeEECCCCCHHHHHHHHHHcCCCeeeEEcCC-----------CCEEEEEEHHHhhc
Confidence            3468899988  88899999999999999999999999999976           89999999999853

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.50  E-value=0.00022  Score=58.75  Aligned_cols=55  Identities=22%  Similarity=0.477  Sum_probs=49.5

Q ss_pred             cccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHH
Q 013262          252 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLV  319 (447)
Q Consensus       252 ~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~  319 (447)
                      ..++.++|.+  ++.++++++++.++++.+.+++.+.+||++++           ++++|+|++.|+.
T Consensus        57 ~~~i~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~-----------g~~~Gvvt~~dl~  111 (113)
T cd04615          57 DAKVREVMNS--PVITIDANDSIAKARWLMSNNNISRLPVLDDK-----------GKVGGIVTEDDIL  111 (113)
T ss_pred             CCcHHHhccC--CceEECCCCcHHHHHHHHHHcCCCeeeEECCC-----------CeEEEEEEHHHhh
Confidence            4568899988  88899999999999999999998899999886           8999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=97.47  E-value=0.0005  Score=58.39  Aligned_cols=51  Identities=24%  Similarity=0.406  Sum_probs=45.2

Q ss_pred             CCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHHHh
Q 013262          377 TTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL  432 (447)
Q Consensus       377 ~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~~~  432 (447)
                      +++.++++++++.++.+.|++.+.+++||+|+     +++++|+||.+|+++....
T Consensus         2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~-----~~~~~Gii~~~dl~~~~~~   52 (124)
T cd04608           2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDE-----SGKILGMVTLGNLLSSLSS   52 (124)
T ss_pred             CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-----CCCEEEEEEHHHHHHHHHH
Confidence            46778999999999999999999999999987     5679999999999976554

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.46  E-value=0.00026  Score=58.25  Aligned_cols=54  Identities=20%  Similarity=0.269  Sum_probs=48.6

Q ss_pred             ccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHH
Q 013262          253 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL  320 (447)
Q Consensus       253 l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~  320 (447)
                      .+++++|.+  ++.++++++++.++++.|.+++...+||+++            ++++|+|+++|+..
T Consensus        58 ~~v~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~~------------~~~~Gvvt~~dl~~  111 (112)
T cd04625          58 TTVRAIMNP--EPIVASPDDSIDEVRRLMVERHLRYLPVLDG------------GTLLGVISFHDVAK  111 (112)
T ss_pred             CCHHHHhCC--CCeEECCCCCHHHHHHHHHHcCCCeeeEEEC------------CEEEEEEEHHHhhc
Confidence            568899988  7889999999999999999999999999984            79999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=97.46  E-value=0.00026  Score=58.28  Aligned_cols=55  Identities=15%  Similarity=0.289  Sum_probs=49.6

Q ss_pred             ccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHH
Q 013262          253 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL  320 (447)
Q Consensus       253 l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~  320 (447)
                      .++.++|.+  +..++++++++.++++.+..++.+.+||++++           ++++|+|+..||++
T Consensus        59 ~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~-----------~~~iG~it~~di~~  113 (114)
T cd04604          59 LPVADVMTR--NPKTIDPDALAAEALELMEENKITALPVVDDN-----------GRPVGVLHIHDLLR  113 (114)
T ss_pred             CCHHHhhcc--CCeEECCCCcHHHHHHHHHHcCCCEEEEECCC-----------CCEEEEEEHHHhhc
Confidence            468899988  78899999999999999999888999999876           89999999999864

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.45  E-value=0.00022  Score=59.12  Aligned_cols=55  Identities=24%  Similarity=0.393  Sum_probs=49.3

Q ss_pred             cccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHH
Q 013262          252 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL  320 (447)
Q Consensus       252 ~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~  320 (447)
                      ..+++++|.+  ++.++++++++.++++.|.+.+...+||+|+            ++++|+|+++|+..
T Consensus        59 ~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~------------~~~~Gvi~~~dl~~  113 (114)
T cd04630          59 RVNVYEIMTK--PLISVSPDMDIKYCARLMERTNIRRAPVVEN------------NELIGIISLTDIFL  113 (114)
T ss_pred             ccCHHHHhcC--CCeeECCCCCHHHHHHHHHHcCCCEeeEeeC------------CEEEEEEEHHHhhc
Confidence            3568899988  8899999999999999999999999999986            68999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=97.45  E-value=0.00027  Score=57.61  Aligned_cols=55  Identities=22%  Similarity=0.331  Sum_probs=49.2

Q ss_pred             ccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHH
Q 013262          253 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL  320 (447)
Q Consensus       253 l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~  320 (447)
                      ..++++|.+  ++.++++++++.++++.+.+++.+.+||++++           |+++|+|+.+++++
T Consensus        52 ~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-----------g~~~Gvi~~~di~~  106 (107)
T cd04610          52 ETVEEIMSK--DLVVAVPEMDIMDAARVMFRTGISKLPVVDEN-----------NNLVGIITNTDVIR  106 (107)
T ss_pred             ccHHHhCCC--CCeEECCCCCHHHHHHHHHHhCCCeEeEECCC-----------CeEEEEEEHHHhhc
Confidence            457889987  78899999999999999999998999999987           89999999999853

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=97.43  E-value=0.00019  Score=59.16  Aligned_cols=55  Identities=15%  Similarity=0.237  Sum_probs=49.5

Q ss_pred             ccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHH
Q 013262          253 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL  320 (447)
Q Consensus       253 l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~  320 (447)
                      .++.++|.+  +..++++++++.++++.+.+++.+.+||++++           ++++|+|+.+|++.
T Consensus        58 ~~v~~i~~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~-----------~~~~Gvvs~~dl~~  112 (113)
T cd04587          58 TLVERVMTP--NPVCATSDTPVLEALHLMVQGKFRHLPVVDKS-----------GQVVGLLDVTKLTH  112 (113)
T ss_pred             CCHHHhcCC--CCeEEcCCCCHHHHHHHHHHcCCCcccEECCC-----------CCEEEEEEHHHhcc
Confidence            568899988  88899999999999999999998999999986           78999999999853

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.41  E-value=0.00024  Score=59.40  Aligned_cols=57  Identities=19%  Similarity=0.416  Sum_probs=50.6

Q ss_pred             ccccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHH
Q 013262          251 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL  320 (447)
Q Consensus       251 ~~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~  320 (447)
                      ...++.++|.+  ++.++++++++.++++.|.+.+.+.+||++++           ++++|+++++|+++
T Consensus        65 ~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~-----------g~~~Gvit~~dl~~  121 (122)
T cd04635          65 ASPTVEKIMST--PVYSVTPDDSIATAVELMLEHDIGRLPVVNEK-----------DQLVGIVDRHDVLK  121 (122)
T ss_pred             ccCcHHHHhcC--CCeeECCCCCHHHHHHHHHHcCCCeeeEEcCC-----------CcEEEEEEhHHhhc
Confidence            34568889987  88899999999999999999999999999986           89999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=97.41  E-value=0.00033  Score=57.37  Aligned_cols=56  Identities=23%  Similarity=0.428  Sum_probs=49.9

Q ss_pred             cccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHH
Q 013262          252 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL  320 (447)
Q Consensus       252 ~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~  320 (447)
                      ..+++++|.+  ++.++++++++.++++.+.+.+...+||+|++           ++++|+|+++|+.+
T Consensus        55 ~~~v~~~~~~--~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~-----------~~~~Gvi~~~di~~  110 (111)
T cd04611          55 QTPVGEVMSS--PLLTVPADTSLYDARQLMREHGIRHLVVVDDD-----------GELLGLLSQTDLLQ  110 (111)
T ss_pred             CcCHHHhcCC--CceEECCCCCHHHHHHHHHHcCCeEEEEECCC-----------CcEEEEEEhHHhhc
Confidence            4668899988  88899999999999999998888889999986           88999999999853

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.39  E-value=0.00036  Score=58.35  Aligned_cols=57  Identities=21%  Similarity=0.430  Sum_probs=50.9

Q ss_pred             ccccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHH
Q 013262          251 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL  320 (447)
Q Consensus       251 ~~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~  320 (447)
                      ...++.++|.+  ++..+++++++.++++.|.+.+.+.+||++++           ++++|+|++.|+..
T Consensus        65 ~~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~-----------~~~~Gvit~~dl~~  121 (122)
T cd04803          65 RDVPVAEVMKT--DVLTVTPDTPLREAAEIMVENKIGCLPVVDDK-----------GTLVGIITRSDFLR  121 (122)
T ss_pred             cCcCHHHhhCC--CCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCC-----------CCEEEEEEHHHhhc
Confidence            45678899988  88899999999999999999898999999986           78999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=97.38  E-value=0.00035  Score=57.04  Aligned_cols=55  Identities=24%  Similarity=0.347  Sum_probs=49.1

Q ss_pred             ccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHH
Q 013262          253 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL  320 (447)
Q Consensus       253 l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~  320 (447)
                      .+++++|.+  ++.++++++++.++.+.+.+.+.+.+||++++           ++++|+|+++|+++
T Consensus        54 ~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~-----------g~~~Gvit~~~l~~  108 (109)
T cd04583          54 KSLEDIMLE--DVFTVQPDASLRDVLGLVLKRGPKYVPVVDED-----------GKLVGLITRSSLVD  108 (109)
T ss_pred             CcHhHhhcC--CceEECCCCcHHHHHHHHHHcCCceeeEECCC-----------CeEEEEEehHHhhc
Confidence            457888987  88899999999999999999899999999986           89999999999853

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.38  E-value=0.00031  Score=57.73  Aligned_cols=55  Identities=16%  Similarity=0.242  Sum_probs=49.1

Q ss_pred             ccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHH
Q 013262          253 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL  320 (447)
Q Consensus       253 l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~  320 (447)
                      ..+.++|..  ++.++++++++.++.+.|.+++.+.+||++++           ++++|+|+++|+..
T Consensus        56 ~~v~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~-----------~~~~G~it~~dl~~  110 (111)
T cd04639          56 APVRGVMRR--DFPTVSPSATLDAVLRLMQQGGAPAVPVVDGS-----------GRLVGLVTLENVGE  110 (111)
T ss_pred             CcHHHHhcC--CCcEECCCCcHHHHHHHHHhcCCceeeEEcCC-----------CCEEEEEEHHHhhc
Confidence            357888987  88899999999999999999999999999886           78999999999853

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=97.38  E-value=0.00033  Score=73.82  Aligned_cols=59  Identities=15%  Similarity=0.256  Sum_probs=53.1

Q ss_pred             cccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHH
Q 013262          252 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLA  321 (447)
Q Consensus       252 ~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~  321 (447)
                      +.+++++|++.++++++++++++.+++++|.+++.+.+||||++           ++++|+|+++|+++.
T Consensus       160 ~~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~-----------g~LvGIIT~~Dilk~  218 (502)
T PRK07107        160 DTKVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKN-----------GNLVYLVFRKDYDSH  218 (502)
T ss_pred             CCCHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCC-----------CeEEEEEEhHHHHhc
Confidence            46799999864478899999999999999999999999999987           899999999999874

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=97.37  E-value=0.00042  Score=56.35  Aligned_cols=54  Identities=13%  Similarity=0.183  Sum_probs=48.1

Q ss_pred             cccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHH
Q 013262          254 TVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL  320 (447)
Q Consensus       254 ~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~  320 (447)
                      +++++|.+  +...+++++++.++++.|.+.+.+.+||+|++           ++++|+|+++++.+
T Consensus        52 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~-----------~~~~Gvi~~~~l~~  105 (106)
T cd04582          52 CCGDHAEP--FKVTVSVDDDLRIVLSRMFAHDMSWLPCVDED-----------GRYVGEVTQRSIAD  105 (106)
T ss_pred             chhhhccc--CCEEECCCCCHHHHHHHHHHCCCCeeeEECCC-----------CcEEEEEEHHHhhc
Confidence            47788887  77789999999999999999999999999986           88999999999853

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=97.37  E-value=0.00035  Score=57.94  Aligned_cols=55  Identities=16%  Similarity=0.345  Sum_probs=47.1

Q ss_pred             ccccccccCCCCeeEecC--CCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHH
Q 013262          253 LTVGELIDAKPPVITLSG--IEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL  320 (447)
Q Consensus       253 l~v~diM~~~~~vv~l~~--~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~  320 (447)
                      ..++++|.+  +...+..  ++++.++++.|.+++...+||++++           ++++|+|+++|+..
T Consensus        57 ~~v~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~-----------~~~~Gvit~~di~~  113 (114)
T cd04602          57 TPLSEVMTP--REVLVVAPTGITLEEANEILRESKKGKLPIVNDD-----------GELVALVTRSDLKK  113 (114)
T ss_pred             CCHHHhcCC--CceEEECCCCCCHHHHHHHHHhcCCCceeEECCC-----------CeEEEEEEHHHhhc
Confidence            347789987  6666655  9999999999999999999999876           89999999999853

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.36  E-value=0.00043  Score=59.79  Aligned_cols=55  Identities=20%  Similarity=0.447  Sum_probs=49.6

Q ss_pred             cccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHH
Q 013262          252 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL  320 (447)
Q Consensus       252 ~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~  320 (447)
                      ..+++++|.+  ++..+.+++++.++++.|.+.+++.+||+++            ++++|+|+++|+.+
T Consensus        80 ~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~------------~~~~Gvit~~di~~  134 (135)
T cd04621          80 PLVAEDIMTE--EIITVSPNDDVVDAAKLMLEANISGLPVVDN------------DNIVGVITKTDICR  134 (135)
T ss_pred             cccHHHhcCC--CCeEECCCCCHHHHHHHHHHcCCCEEEEEeC------------CEEEEEEEHHHHhh
Confidence            4578999988  8889999999999999999999999999986            68999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=97.36  E-value=0.00055  Score=46.48  Aligned_cols=47  Identities=30%  Similarity=0.509  Sum_probs=41.2

Q ss_pred             eeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHH
Q 013262          265 VITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLAL  322 (447)
Q Consensus       265 vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L  322 (447)
                      +.++++++++.++.+.+.+.+++.+||++++           ++++|+++..++...+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-----------~~~~g~i~~~~l~~~~   48 (49)
T smart00116        2 VVTVSPDTTLEEALELLREHGIRRLPVVDEE-----------GRLVGIVTRRDIIKAL   48 (49)
T ss_pred             ceEecCCCcHHHHHHHHHHhCCCcccEECCC-----------CeEEEEEEHHHHHHhh
Confidence            4578899999999999999999999999986           7899999999997643

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=97.35  E-value=0.00073  Score=55.33  Aligned_cols=50  Identities=28%  Similarity=0.316  Sum_probs=44.2

Q ss_pred             CCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHHH
Q 013262          377 TTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI  431 (447)
Q Consensus       377 ~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~~  431 (447)
                      +++.++.+++++.++++.|.+.+...+||+|+     .++++|+||.+|+++...
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-----~~~~~G~v~~~~l~~~~~   51 (110)
T cd04605           2 RPVVTISEDASIKEAAKLMIEENINHLPVVDE-----DGRLVGIVTSWDISKAVA   51 (110)
T ss_pred             CCCEEECCCCCHHHHHHHHHhCCCceEEEECC-----CCcEEEEEeHHHHHHHHh
Confidence            46678999999999999999999999999987     578999999999987543

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.35  E-value=0.00072  Score=55.56  Aligned_cols=50  Identities=22%  Similarity=0.218  Sum_probs=43.8

Q ss_pred             CCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHHHh
Q 013262          378 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL  432 (447)
Q Consensus       378 ~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~~~  432 (447)
                      ++.++++++++.++.+.|.+.+.+.+||+|+     +++++|+||.+|+++...+
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-----~~~~~G~v~~~~l~~~~~~   51 (112)
T cd04624           2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDP-----DERPIGIVTERDIVRAVAA   51 (112)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCCEEEEECC-----CCCEEEEeeHHHHHHHHhc
Confidence            4568899999999999999999999999986     4789999999999876543

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=97.35  E-value=0.00038  Score=57.24  Aligned_cols=56  Identities=14%  Similarity=0.389  Sum_probs=50.4

Q ss_pred             cccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecC-CCCCCCCCCCCCceEEEEEeHHHHHH
Q 013262          252 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDE-GVVPPSGLANVATELHGLILRAHLVL  320 (447)
Q Consensus       252 ~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~-~~~~~~~~~~~~~~lvGiIt~~dL~~  320 (447)
                      ..++.++|.+  ++.++++++++.++++.|.+.+.+.+||+++ +           ++++|+++.+|+..
T Consensus        57 ~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~-----------~~~~Gvvt~~di~~  113 (114)
T cd04613          57 LVVASDIMTK--PPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDP-----------GKLLGILSRSDLLS  113 (114)
T ss_pred             cEEHHHhccC--CCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCC-----------CEEEEEEEhHHhhc
Confidence            3678899988  8899999999999999999999999999987 5           79999999999853

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.34  E-value=0.00033  Score=57.67  Aligned_cols=55  Identities=24%  Similarity=0.445  Sum_probs=49.3

Q ss_pred             ccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHH
Q 013262          253 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL  320 (447)
Q Consensus       253 l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~  320 (447)
                      .+++++|.+  ++.++++++++.++++.+.+.+.+.+||++++           ++++|+|++.|+.+
T Consensus        58 ~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-----------~~~~G~it~~di~~  112 (113)
T cd04622          58 TTVGDVMTR--GVVTVTEDDDVDEAARLMREHQVRRLPVVDDD-----------GRLVGIVSLGDLAR  112 (113)
T ss_pred             CCHHHhccC--CccEECCCCCHHHHHHHHHHcCCCeeeEECCC-----------CcEEEEEEHHHhhc
Confidence            358899988  88899999999999999999999999999876           79999999999854

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=97.34  E-value=0.00032  Score=69.89  Aligned_cols=59  Identities=27%  Similarity=0.327  Sum_probs=52.7

Q ss_pred             ccCccccccCC--CceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHHH
Q 013262          368 YIDLHPLTNTT--PYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI  431 (447)
Q Consensus       368 ~idl~~im~~~--p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~~  431 (447)
                      .++++++|+++  +.++++++++.++.+.|.+.+...+||+|+     +|+++|+||.+|+.+...
T Consensus       196 ~~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~-----~g~~iG~vt~~dl~~~~~  256 (321)
T PRK11543        196 LNKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDA-----QQQVQGVFTDGDLRRWLV  256 (321)
T ss_pred             HhHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcC-----CCcEEEEecHHHHHHHHh
Confidence            35788999998  999999999999999999999999999997     578999999999987543

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.33  E-value=0.00034  Score=58.77  Aligned_cols=56  Identities=20%  Similarity=0.415  Sum_probs=50.1

Q ss_pred             cccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHH
Q 013262          252 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL  320 (447)
Q Consensus       252 ~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~  320 (447)
                      ..++.++|.+  ++.++++++++.++++.+.+.+.+.+||++++           ++++|+|+++|+.+
T Consensus        69 ~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~-----------~~~~Gvit~~di~~  124 (125)
T cd04631          69 NEPVRSIMTR--NVITITPDDSIKDAAELMLEKRVGGLPVVDDD-----------GKLVGIVTERDLLK  124 (125)
T ss_pred             hcCHHHHhcC--CceEeCCCCcHHHHHHHHHHcCCceEEEEcCC-----------CcEEEEEEHHHhhc
Confidence            3568889987  88999999999999999999999999999876           78999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=97.33  E-value=0.00029  Score=58.29  Aligned_cols=58  Identities=19%  Similarity=0.365  Sum_probs=48.7

Q ss_pred             cccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHH
Q 013262          252 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL  320 (447)
Q Consensus       252 ~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~  320 (447)
                      ..++.++|.+..++.++.+++++.++++.|.+++.+.+||++++           ++++|+++.+|+.+
T Consensus        56 ~~~v~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~-----------~~~~Gvl~~~di~~  113 (114)
T cd04801          56 QTTVIQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDS-----------GQVIGLITEADLLR  113 (114)
T ss_pred             ccchhhhhcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcCC-----------CcEEEEEeccceec
Confidence            34678888752246689999999999999999999999999986           79999999998853

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.33  E-value=0.00046  Score=56.78  Aligned_cols=54  Identities=24%  Similarity=0.537  Sum_probs=48.3

Q ss_pred             cccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHH
Q 013262          252 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLV  319 (447)
Q Consensus       252 ~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~  319 (447)
                      ..++.++|.+  ++..+++++++.++++.+.+.+.+.+||+++            ++++|+|+++|+.
T Consensus        57 ~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~------------~~~~Gvi~~~di~  110 (112)
T cd04802          57 EVPVGEVMST--PLITIDPNASLNEAAKLMAKHGIKRLPVVDD------------DELVGIVTTTDIV  110 (112)
T ss_pred             cCCHHHhcCC--CcEEECCCCCHHHHHHHHHHcCCCeeEEeeC------------CEEEEEEEhhhhh
Confidence            4568899987  8889999999999999999999999999986            4899999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=97.33  E-value=0.00047  Score=56.55  Aligned_cols=54  Identities=19%  Similarity=0.382  Sum_probs=48.8

Q ss_pred             cccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHH
Q 013262          252 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLV  319 (447)
Q Consensus       252 ~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~  319 (447)
                      ..+++++|.+  ++.++++++++.++++.|.+.+.+.+||++ +           ++++|+|++.|+.
T Consensus        55 ~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-----------~~~~Gvvt~~di~  108 (110)
T cd04595          55 HAPVKDYMST--DVVTVPPDTPLSEVQELMVEHDIGRVPVVE-D-----------GRLVGIVTRTDLL  108 (110)
T ss_pred             cCcHHHHhcC--CCEEECCCCcHHHHHHHHHHcCCCeeEEEe-C-----------CEEEEEEEhHHhh
Confidence            4568899988  888999999999999999999999999998 5           7999999999985

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.32  E-value=0.00081  Score=55.12  Aligned_cols=50  Identities=26%  Similarity=0.304  Sum_probs=43.7

Q ss_pred             CCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHHHh
Q 013262          378 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL  432 (447)
Q Consensus       378 ~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~~~  432 (447)
                      ++.++++++++.++.+.|.+.+..++||+|+     +++++|+++.+|+++...+
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~-----~~~~~Giv~~~~l~~~~~~   51 (113)
T cd04623           2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDD-----GGRLVGIFSERDIVRKVAL   51 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEECC-----CCCEEEEEehHHHHHHHhh
Confidence            4567899999999999999999999999987     4689999999999986543

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=97.32  E-value=0.00037  Score=69.66  Aligned_cols=59  Identities=19%  Similarity=0.215  Sum_probs=51.1

Q ss_pred             ccCccccccC--CCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHHH
Q 013262          368 YIDLHPLTNT--TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI  431 (447)
Q Consensus       368 ~idl~~im~~--~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~~  431 (447)
                      .+.++++|.+  ++.++++++++.++.++|.+.+.+.+||+|+     +|+++|+||.+|+.+...
T Consensus       201 ~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~-----~g~lvGivt~~Dl~~~~~  261 (326)
T PRK10892        201 LLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDD-----NMKIEGIFTDGDLRRVFD  261 (326)
T ss_pred             cCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcC-----CCcEEEEEecHHHHHHHh
Confidence            4567889987  8899999999999999999999888888886     578999999999987543

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.32  E-value=0.0007  Score=55.97  Aligned_cols=49  Identities=16%  Similarity=0.181  Sum_probs=43.6

Q ss_pred             CCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHHH
Q 013262          378 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI  431 (447)
Q Consensus       378 ~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~~  431 (447)
                      .++++++++++.++.+.|.+.+.+.+||+|+     +++++|+|+.+|+.+...
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-----~~~~~Giv~~~dl~~~~~   50 (116)
T cd04643           2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDK-----EGKYVGTISLTDILWKLK   50 (116)
T ss_pred             CcEEECCCCcHHHHHHHHHHCCCceeeeECC-----CCcEEEEEeHHHHHHHhh
Confidence            3568899999999999999999999999986     568999999999987654

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=97.32  E-value=0.0003  Score=60.35  Aligned_cols=55  Identities=22%  Similarity=0.462  Sum_probs=49.8

Q ss_pred             cccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHH
Q 013262          252 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL  320 (447)
Q Consensus       252 ~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~  320 (447)
                      ..++.++|.+  ++..+++++++.++++.|.+.+.+.+||+| +           |+++|+|+++|+.+
T Consensus        80 ~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~-----------g~~~Gvit~~di~~  134 (135)
T cd04586          80 GRKVADVMTR--PVVTVGEDTPLAEVAELMEEHRIKRVPVVR-G-----------GRLVGIVSRADLLR  134 (135)
T ss_pred             CCCHHHHhCC--CceEeCCCCcHHHHHHHHHHcCCCccCEec-C-----------CEEEEEEEhHhhhc
Confidence            4578899988  889999999999999999999999999999 6           89999999999854

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=97.32  E-value=0.00045  Score=56.60  Aligned_cols=54  Identities=19%  Similarity=0.325  Sum_probs=48.5

Q ss_pred             ccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHH
Q 013262          253 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLV  319 (447)
Q Consensus       253 l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~  319 (447)
                      .++.++|.+  ++.++++++++.++++.|.+.+.+.+||++++           ++++|+|+++|+.
T Consensus        55 ~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-----------~~~~G~i~~~dl~  108 (110)
T cd04588          55 AKVKDVMTK--DVITIDEDEQLYDAIRLMNKHNVGRLIVTDDE-----------GRPVGIITRTDIL  108 (110)
T ss_pred             cCHHHHhcC--CceEECCCCCHHHHHHHHHhcCCCEEEEECCC-----------CCEEEEEEhHHhh
Confidence            457788887  88899999999999999999999999999886           7999999999985

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.30  E-value=0.00088  Score=55.93  Aligned_cols=49  Identities=33%  Similarity=0.420  Sum_probs=44.0

Q ss_pred             CCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHHH
Q 013262          378 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI  431 (447)
Q Consensus       378 ~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~~  431 (447)
                      ++.++++++++.++.+.|.+.+.+.+||+|+     +++++|+||.+|+.+...
T Consensus         2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~-----~~~~~Givt~~dl~~~~~   50 (118)
T cd04617           2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDE-----DGDLVGVVSRKDLLKASI   50 (118)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-----CCCEEEEEEHHHHHHHHH
Confidence            4568999999999999999999999999987     567999999999998765

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=97.30  E-value=0.00044  Score=56.51  Aligned_cols=56  Identities=18%  Similarity=0.296  Sum_probs=47.5

Q ss_pred             cccccccccCCCCeeEecC-CCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHH
Q 013262          252 TLTVGELIDAKPPVITLSG-IEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL  320 (447)
Q Consensus       252 ~l~v~diM~~~~~vv~l~~-~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~  320 (447)
                      ..++.++|.+  ++..+.+ ++++.++++.+.+.+++.+||++++           ++++|+|+++|++.
T Consensus        53 ~~~v~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~-----------~~~~Gvi~~~dil~  109 (110)
T cd04601          53 DKPVSEVMTP--ENLLTTVEGTSLEEALELLHEHKIEKLPVVDDE-----------GKLKGLITVKDIEK  109 (110)
T ss_pred             CCCHHHhccc--CceEEecCCCCHHHHHHHHHHhCCCeeeEEcCC-----------CCEEEEEEhhhhhc
Confidence            3567889977  5566666 9999999999999999999999976           79999999999853

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=97.27  E-value=0.00098  Score=55.17  Aligned_cols=49  Identities=24%  Similarity=0.194  Sum_probs=43.6

Q ss_pred             CCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHHH
Q 013262          378 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI  431 (447)
Q Consensus       378 ~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~~  431 (447)
                      ++.++.+++++.++.+.|.+.+...+||+|+     +++++|+++++|+.+...
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-----~~~~~G~v~~~dl~~~~~   50 (115)
T cd04593           2 PPPVLSATTPLREAAEQLIESKHGSALVVDR-----DGGVVGIITLPDLLRALE   50 (115)
T ss_pred             CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcC-----CCCEEEEEEHHHHHHHHh
Confidence            4568899999999999999999999999987     578999999999987654

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.26  E-value=0.001  Score=56.33  Aligned_cols=48  Identities=38%  Similarity=0.491  Sum_probs=42.6

Q ss_pred             CCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHH
Q 013262          378 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFN  430 (447)
Q Consensus       378 ~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~  430 (447)
                      ++.++.+++++.++.++|.+.+.+.+||+|+     +++++|+||++|+.+..
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~-----~~~~~G~it~~dl~~~~   49 (128)
T cd04632           2 DVITVREDDSVGKAINVLREHGISRLPVVDD-----NGKLTGIVTRHDIVDFV   49 (128)
T ss_pred             CceEeCCCCCHHHHHHHHHHcCCCEEEEECC-----CCcEEEEEEHHHHHHHH
Confidence            3457899999999999999999999999987     57899999999998654

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=97.25  E-value=0.00057  Score=71.66  Aligned_cols=59  Identities=20%  Similarity=0.266  Sum_probs=53.8

Q ss_pred             ccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHh
Q 013262          253 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK  324 (447)
Q Consensus       253 l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~  324 (447)
                      .+++|+|++  +++++++++++.++++.|.+++.+.+||+|++           ++++|+|+++||++....
T Consensus       148 ~~V~diMt~--~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~-----------g~lvGIIT~~DIl~~~~~  206 (479)
T PRK07807        148 TQVRDVMST--DLVTLPAGTDPREAFDLLEAARVKLAPVVDAD-----------GRLVGVLTRTGALRATIY  206 (479)
T ss_pred             CCHHHhccC--CceEECCCCcHHHHHHHHHhcCCCEEEEEcCC-----------CeEEEEEEHHHHHHHhhC
Confidence            458899998  99999999999999999999999999999987           899999999999886554

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=97.24  E-value=0.00066  Score=55.79  Aligned_cols=55  Identities=18%  Similarity=0.262  Sum_probs=48.8

Q ss_pred             cccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHH
Q 013262          252 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL  320 (447)
Q Consensus       252 ~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~  320 (447)
                      ..+++++|.+  ++..+++++++.++++.|.+++...+||+++            ++++|+|+.+|+.+
T Consensus        56 ~~~i~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~------------~~~~G~it~~dl~~  110 (111)
T cd04589          56 STPVGEIATF--PLITVDPDDFLFNALLLMTRHRIHRVVVREG------------GEVVGVLEQTDLLS  110 (111)
T ss_pred             CCCHHHHhCC--CcEEECCCCcHHHHHHHHHHhCccEEEEeeC------------CEEEEEEEhHHhhc
Confidence            3467889988  8889999999999999999999999999985            68999999999854

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.23  E-value=0.00047  Score=56.80  Aligned_cols=55  Identities=22%  Similarity=0.434  Sum_probs=48.8

Q ss_pred             cccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHH
Q 013262          252 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL  320 (447)
Q Consensus       252 ~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~  320 (447)
                      ..++.++|.+  ++.++++++++.++++.|.+++.+.+||+++            ++++|+|+.+|+.+
T Consensus        59 ~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~------------~~~~Gvit~~di~~  113 (114)
T cd04629          59 VATVRDIMTT--EVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD------------GKLVGQISRRDVLR  113 (114)
T ss_pred             CccHHHHhcc--CceEECCCCcHHHHHHHHHHhCCCccCEEEC------------CEEEEEEEHHHHhc
Confidence            3568899988  7889999999999999999998889999986            68999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=97.23  E-value=0.00056  Score=56.12  Aligned_cols=55  Identities=25%  Similarity=0.364  Sum_probs=49.2

Q ss_pred             cccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHH
Q 013262          252 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL  320 (447)
Q Consensus       252 ~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~  320 (447)
                      ..++.++|..  ++.++++++++.++++.|.+.+.+.+||+++            ++++|+|+.+|+.+
T Consensus        56 ~~~i~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~------------~~~~Giit~~di~~  110 (111)
T cd04800          56 DTPVSEVMTA--PPITIPPDATVFEALLLMLERGIHHLPVVDD------------GRLVGVISATDLLR  110 (111)
T ss_pred             cCCHHHHhCC--CCeEECCCCcHHHHHHHHHHcCCCeeeEeEC------------CEEEEEEEHHHhhc
Confidence            3568899988  8889999999999999999999999999986            68999999999864

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=97.22  E-value=0.00067  Score=71.65  Aligned_cols=62  Identities=16%  Similarity=0.280  Sum_probs=54.9

Q ss_pred             cccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHh
Q 013262          252 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK  324 (447)
Q Consensus       252 ~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~  324 (447)
                      +.+++++|++..+++++++++++.++++.|.+++.+.+||||++           ++++|+|+++|+.+.+..
T Consensus       162 ~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~-----------g~LvGvITr~DIlk~~~~  223 (505)
T PLN02274        162 ETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNED-----------GELVDLVTRTDVKRVKGY  223 (505)
T ss_pred             CCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-----------CeEEEEEEHHHHHHHhhC
Confidence            46789999973238899999999999999999999999999987           899999999999987754

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.22  E-value=0.00076  Score=57.06  Aligned_cols=52  Identities=17%  Similarity=0.241  Sum_probs=45.9

Q ss_pred             cccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHH
Q 013262          256 GELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL  320 (447)
Q Consensus       256 ~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~  320 (447)
                      .+.|.+  ++.++++++++.++++.|.+++.+.+||+|++           ++++|+|+.+|+.+
T Consensus        74 ~~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~-----------~~~~Giit~~dil~  125 (126)
T cd04642          74 DGVKSR--PLITCTPSSTLKEVITKLVANKVHRVWVVDEE-----------GKPIGVITLTDIIS  125 (126)
T ss_pred             cccccC--CCeEECCCCcHHHHHHHHHHhCCcEEEEECCC-----------CCEEEEEEHHHHhc
Confidence            356666  78899999999999999999988999999986           89999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=97.21  E-value=0.00077  Score=55.16  Aligned_cols=55  Identities=22%  Similarity=0.398  Sum_probs=49.4

Q ss_pred             ccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHH
Q 013262          253 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL  320 (447)
Q Consensus       253 l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~  320 (447)
                      .++.++|.+  ++.++++++++.++++.|.+++.+.+||++++           ++++|+|+..|+.+
T Consensus        56 ~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-----------~~~~G~it~~di~~  110 (111)
T cd04612          56 VLVGDVMTR--DPVTASPDETLRDALKRMAERDIGRLPVVDDS-----------GRLVGIVSRSDLLR  110 (111)
T ss_pred             cCHHHhccC--CCeEECCCCCHHHHHHHHHhCCCCeeeEEcCC-----------CCEEEEEEHHHhhh
Confidence            467788988  88999999999999999999999999999876           89999999999853

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>COG0517 FOG: CBS domain [General function prediction only]

Probab=97.20  E-value=0.00074  Score=55.81  Aligned_cols=52  Identities=21%  Similarity=0.444  Sum_probs=48.2

Q ss_pred             cccccccCCCCeeEecCCCCHHHHHHHHhc-CCCCeEEEecCCCCCCCCCCCCCc-eEEEEEeHHHH
Q 013262          254 TVGELIDAKPPVITLSGIEKVSQIVDVLRN-TTHNGFPVLDEGVVPPSGLANVAT-ELHGLILRAHL  318 (447)
Q Consensus       254 ~v~diM~~~~~vv~l~~~~tv~~~~~~L~~-~~~~~fPVVd~~~~~~~~~~~~~~-~lvGiIt~~dL  318 (447)
                      +++++|..  +++++.++.++.++.+.|.+ .+++.+||++++           + +++|++++.|+
T Consensus        63 ~v~~v~~~--~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~-----------~~~lvGivt~~di  116 (117)
T COG0517          63 PVKEVMTK--PVVTVDPDTPLEEALELMVERHKIRRLPVVDDD-----------GGKLVGIITLSDI  116 (117)
T ss_pred             cHHHhccC--CcEEECCCCCHHHHHHHHHHHcCcCeEEEEECC-----------CCeEEEEEEHHHc
Confidence            68899998  88999999999999999999 699999999986           5 99999999986

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=97.20  E-value=0.00062  Score=55.49  Aligned_cols=53  Identities=13%  Similarity=0.201  Sum_probs=46.9

Q ss_pred             cccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHH
Q 013262          254 TVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL  320 (447)
Q Consensus       254 ~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~  320 (447)
                      ++.++|.+  +..++++++++.++++.|.+++.+.+||+++            ++++|+|+++|+..
T Consensus        51 ~~~~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~------------~~~iGvit~~dl~~  103 (104)
T cd04594          51 DVVDYIVR--GIPYVRLTSTAEEAWEVMMKNKTRWCPVVDD------------GKFKGIVTLDSILD  103 (104)
T ss_pred             chhhhhhc--CCcEEcCCCCHHHHHHHHHHcCcceEEEEEC------------CEEEEEEEHHHhhc
Confidence            46678887  7889999999999999999999999999974            79999999999853

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.20  E-value=0.0006  Score=56.88  Aligned_cols=56  Identities=29%  Similarity=0.587  Sum_probs=49.8

Q ss_pred             ccccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHH
Q 013262          251 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL  320 (447)
Q Consensus       251 ~~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~  320 (447)
                      ...++.++|.+  +..++++++++.++++.|.+.+.+.+||+++            ++++|+|+++|+++
T Consensus        65 ~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~------------~~~~Gvi~~~dl~~  120 (121)
T cd04633          65 RNLPVSDIMTR--PVITIEPDTSVSDVASLMLENNIGGLPVVDD------------GKLVGIVTRTDILR  120 (121)
T ss_pred             hccCHHHHccC--CceEECCCCcHHHHHHHHHHcCCCcccEEEC------------CEEEEEEEHHHhhc
Confidence            45678899988  8889999999999999999999999999986            68999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=97.20  E-value=0.0007  Score=70.90  Aligned_cols=59  Identities=17%  Similarity=0.289  Sum_probs=53.8

Q ss_pred             ccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHh
Q 013262          253 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK  324 (447)
Q Consensus       253 l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~  324 (447)
                      .+++++|++  +++++++++++.+++++|.+++.+.+||||++           ++++|+|+++||++....
T Consensus       146 ~~V~dIMt~--~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~-----------g~LvGIIT~~DLl~~~~~  204 (475)
T TIGR01303       146 TQVRDIMST--DLVTAPADTEPRKAFDLLEHAPRDVAPLVDAD-----------GTLAGILTRTGALRATIY  204 (475)
T ss_pred             CCHHHHccC--CceEeCCCCcHHHHHHHHHHcCCCEEEEEcCC-----------CeEEEEEEHHHHHHHHhC
Confidence            468999998  89999999999999999999999999999987           899999999999886544

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=97.19  E-value=0.00077  Score=54.61  Aligned_cols=53  Identities=21%  Similarity=0.358  Sum_probs=47.9

Q ss_pred             ccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHH
Q 013262          253 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLV  319 (447)
Q Consensus       253 l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~  319 (447)
                      .++.++|.+  +..++++++++.++++.|.+++...+||+++            ++++|+|+.+++.
T Consensus        51 ~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~------------~~~~G~it~~~l~  103 (105)
T cd04599          51 RLVADAMTR--EVVTISPEASLLEAKRLMEEKKIERLPVLRE------------RKLVGIITKGTIA  103 (105)
T ss_pred             CCHHHHccC--CCEEECCCCCHHHHHHHHHHcCCCEeeEEEC------------CEEEEEEEHHHhc
Confidence            357888988  8889999999999999999999999999986            7999999999985

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=97.19  E-value=0.00076  Score=70.60  Aligned_cols=60  Identities=25%  Similarity=0.346  Sum_probs=53.3

Q ss_pred             ccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHHHh
Q 013262          368 YIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL  432 (447)
Q Consensus       368 ~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~~~  432 (447)
                      .++++++|.+++.++.+++++.++.+.|.+.+.+.+||+|+     +++++|+||.+|+.+...+
T Consensus       334 ~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~-----~~~~~Givt~~dl~~~~~~  393 (454)
T TIGR01137       334 NATVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTE-----AGKVLGSVTLRELLSALFA  393 (454)
T ss_pred             cCCHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC-----CCeEEEEEEHHHHHHHHhc
Confidence            45678899999999999999999999999999999999987     5689999999999986543

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.19  E-value=0.00084  Score=57.29  Aligned_cols=55  Identities=22%  Similarity=0.436  Sum_probs=49.0

Q ss_pred             cccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHH
Q 013262          252 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL  320 (447)
Q Consensus       252 ~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~  320 (447)
                      ..++.++|.+  ++..+++++++.++.+.|.+.+.+.+||+++            ++++|+|+++|+++
T Consensus        77 ~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~------------~~~iGvit~~dl~~  131 (132)
T cd04636          77 GKKVEEIMTK--KVITVDEDTTIEDVARIMSKKNIKRLPVVDD------------GKLVGIISRGDIIR  131 (132)
T ss_pred             CCCHHHhccC--CceEECCCCcHHHHHHHHHHCCCCeeEEEEC------------CEEEEEEEHHHhhc
Confidence            3478899988  8889999999999999999999999999986            68999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=97.19  E-value=0.00071  Score=55.56  Aligned_cols=49  Identities=27%  Similarity=0.379  Sum_probs=44.2

Q ss_pred             cccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHH
Q 013262          258 LIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL  320 (447)
Q Consensus       258 iM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~  320 (447)
                      +|.+  ++.++++++++.++.+.|.+++.+.+||+++            ++++|+|+++|+.+
T Consensus        56 ~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~~------------~~~~Gvvt~~dl~~  104 (105)
T cd04591          56 YIDP--SPFTVSPRTSLEKVHQLFRKLGLRHLLVVDE------------GRLVGIITRKDLLK  104 (105)
T ss_pred             hccC--CCceECCCCcHHHHHHHHHHcCCCEEEEEEC------------CeEEEEEEhhhhhc
Confidence            7877  8889999999999999999999999999954            79999999999864

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.15  E-value=0.00081  Score=55.24  Aligned_cols=53  Identities=17%  Similarity=0.418  Sum_probs=47.9

Q ss_pred             ccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHH
Q 013262          253 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLV  319 (447)
Q Consensus       253 l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~  319 (447)
                      .++.++|.+  ++.++++++++.++++.|.+++...+||+++            ++++|+|++.|+.
T Consensus        57 ~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~------------~~~~G~it~~di~  109 (111)
T cd04626          57 KKVFNIVSQ--DVFYVNEEDTIDEALDIMREKQIGRLPVVDD------------NKLIGVVRTKDIL  109 (111)
T ss_pred             CcHHHHhcC--CcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC------------CEEEEEEEhHHhc
Confidence            467888988  8889999999999999999999999999986            6899999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.14  E-value=0.0013  Score=55.72  Aligned_cols=46  Identities=30%  Similarity=0.470  Sum_probs=41.5

Q ss_pred             CCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHH
Q 013262          378 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRA  428 (447)
Q Consensus       378 ~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~  428 (447)
                      ++.++.+++++.++.+.|.+.+.+.+||+|+     +++++|+|+.+|+.+
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~-----~~~~~Giv~~~dl~~   47 (126)
T cd04640           2 KPIVIPADTSIDEALELMIKHGVRLLLVVDS-----DDNFIGVITAVDLLG   47 (126)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCcEEEEEcC-----CCcEEEEEEHHHHhh
Confidence            3568999999999999999999999999987     568999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.13  E-value=0.0009  Score=55.98  Aligned_cols=55  Identities=24%  Similarity=0.318  Sum_probs=49.5

Q ss_pred             ccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHH
Q 013262          253 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL  320 (447)
Q Consensus       253 l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~  320 (447)
                      .+++++|.+  ++..+++++++.++++.+.+++.+.+||++++           ++++|++++.|++.
T Consensus        67 ~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~-----------~~~~Gvit~~dll~  121 (122)
T cd04637          67 RRAHQIMTR--DPITVSPDTPVDEASKLLLENSISCLPVVDEN-----------GQLIGIITWKDLLK  121 (122)
T ss_pred             hHHHHhhcC--CCeeeCCCCcHHHHHHHHHHcCCCeEeEECCC-----------CCEEEEEEHHHhhh
Confidence            468899988  88999999999999999999998999999886           79999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=97.11  E-value=0.0016  Score=53.39  Aligned_cols=50  Identities=12%  Similarity=0.122  Sum_probs=44.0

Q ss_pred             CCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCC-CcEEEEEeHHHHHHHHHh
Q 013262          378 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGV-SPVVGILTRQDLRAFNIL  432 (447)
Q Consensus       378 ~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~-~~lvGIITr~DLl~~~~~  432 (447)
                      +..++++++++.++.+.|.+.+...+||+++     + ++++|++|.+|+.+...+
T Consensus         2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~-----~~~~~~G~v~~~~l~~~~~~   52 (111)
T cd04590           2 DIVALDADDTLEEILELIAESGHSRFPVYDG-----DLDNIIGVVHVKDLLRALAE   52 (111)
T ss_pred             ceEEEcCCCCHHHHHHHHhhCCCceEEEECC-----CCceEEEEEEHHHHHHHHHc
Confidence            3568899999999999999999999999987     4 689999999999987654

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=97.10  E-value=0.001  Score=55.39  Aligned_cols=56  Identities=23%  Similarity=0.427  Sum_probs=49.6

Q ss_pred             ccccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHH
Q 013262          251 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL  320 (447)
Q Consensus       251 ~~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~  320 (447)
                      ...++.++|.+  ++.++++++++.++++.+.+.+++.+||+++            ++++|+++.+|+.+
T Consensus        65 ~~~~v~~~~~~--~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~------------~~~~Gvv~~~di~~  120 (121)
T cd04584          65 LKMPVKEIMTK--DVITVHPLDTVEEAALLMREHRIGCLPVVED------------GRLVGIITETDLLR  120 (121)
T ss_pred             cCcCHHHHhhC--CCeEECCCCcHHHHHHHHHHcCCCeEEEeeC------------CEEEEEEEHHHhhc
Confidence            34568899988  8899999999999999999999999999976            68999999999854

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.09  E-value=0.0022  Score=51.75  Aligned_cols=51  Identities=31%  Similarity=0.287  Sum_probs=44.4

Q ss_pred             CCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHHHhh
Q 013262          378 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILT  433 (447)
Q Consensus       378 ~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~~~~  433 (447)
                      ++.++++++++.++.+.|.+.+.+.+||+++     +++++|+++++|+++...+.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-----~~~~~G~v~~~~l~~~~~~~   52 (113)
T cd02205           2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDD-----DGRLVGIVTERDLLRALAEG   52 (113)
T ss_pred             CceEecCCCCHHHHHHHHHhcCCceEEEECC-----CCCEEEEEeHHHHHHHHHhc
Confidence            3567889999999999999999999999987     46899999999999876653

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=97.08  E-value=0.00086  Score=64.94  Aligned_cols=59  Identities=22%  Similarity=0.299  Sum_probs=52.4

Q ss_pred             ccCccccccCC-CceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHHH
Q 013262          368 YIDLHPLTNTT-PYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI  431 (447)
Q Consensus       368 ~idl~~im~~~-p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~~  431 (447)
                      .+.++++|+++ +.++.+++++.++.+.|.+.+.+.+||+|+     +++++|+||.+|+.+...
T Consensus       154 ~~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~-----~g~~~Givt~~dl~~~~~  213 (268)
T TIGR00393       154 LVKVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDE-----NNQLVGVFTDGDLRRALL  213 (268)
T ss_pred             hhhHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeC-----CCCEEEEEEcHHHHHHHh
Confidence            45678899888 899999999999999999999999999997     578999999999987543

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=97.08  E-value=0.0044  Score=63.16  Aligned_cols=133  Identities=17%  Similarity=0.218  Sum_probs=94.9

Q ss_pred             CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262          264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF  343 (447)
Q Consensus       264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~  343 (447)
                      +.+.+.+..++-++...+.+.+++..||.|.+          .+.++.+++..-+++.+.......              
T Consensus       163 ~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~----------~~~v~~ilt~~rIl~~l~~~~~~~--------------  218 (381)
T KOG1764|consen  163 PFVSISPESSLLDAVLLLIKSRIHRVPVIDPE----------TGEVLYILTQRRILKFLWLNGRLL--------------  218 (381)
T ss_pred             CceeecCcHHHHHHHHHHHhCCccceeeeccc----------ccceeeehhHHHHHHHHHHhhccc--------------
Confidence            44788888899888888999999999999943          268999999999888775421100              


Q ss_pred             hHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeH
Q 013262          344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR  423 (447)
Q Consensus       344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr  423 (447)
                      ....++..  ++.+..+.             +......+.+++++.+|+++|...++..+||||+     .++.+|++++
T Consensus       219 ~~~~~l~~--s~~dl~ig-------------~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~-----~g~~v~~~s~  278 (381)
T KOG1764|consen  219 PLPSLLSK--SLSDLGIG-------------TWSNIASISEDTPVIEALKIMSERRISALPVVDE-----NGKKVGNYSR  278 (381)
T ss_pred             ccHHHhhC--CHHHhCcc-------------hhhhheeecCCCcHHHHHHHHHhcCcCcceEEcC-----CCceecceeh
Confidence            00011100  11111111             1124678899999999999999999999999998     5567999999


Q ss_pred             HHHHHHHHhhhcCcccc
Q 013262          424 QDLRAFNILTAFPHLER  440 (447)
Q Consensus       424 ~DLl~~~~~~~~~~~~~  440 (447)
                      .|+.......-+..+..
T Consensus       279 ~Dv~~l~~~~~~~~~~~  295 (381)
T KOG1764|consen  279 FDVIHLAREGTYNNLDL  295 (381)
T ss_pred             hhhhhhhhcCccCccch
Confidence            99998777665555443

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=97.06  E-value=0.0011  Score=64.88  Aligned_cols=61  Identities=20%  Similarity=0.332  Sum_probs=56.0

Q ss_pred             ccccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHh
Q 013262          251 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK  324 (447)
Q Consensus       251 ~~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~  324 (447)
                      .+.+...+|++  ++.++.+.++++.+.+.|--.+++-+||+|++           .+++|+|+|+|+++.|+.
T Consensus       247 ~~t~ieKVMtk--np~tv~~~tsVAsvaq~MiwE~iem~PVv~~n-----------~~llGiitR~dvlk~lq~  307 (432)
T COG4109         247 PSTTIEKVMTK--NPITVRAKTSVASVAQMMIWEGIEMLPVVDSN-----------NTLLGIITRQDVLKSLQM  307 (432)
T ss_pred             CCccHHHHhcc--CCeeecccchHHHHHHHHHhccceeeeEEcCC-----------ceEEEEEEHHHHHHHHHH
Confidence            45667889999  99999999999999999999999999999998           899999999999998875

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=96.89  E-value=0.0015  Score=67.88  Aligned_cols=61  Identities=26%  Similarity=0.380  Sum_probs=53.5

Q ss_pred             CccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHHHhhhc
Q 013262          370 DLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTAF  435 (447)
Q Consensus       370 dl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~~~~~~  435 (447)
                      .+.+.+..+|++|++++|+.+|.+.|...|.+.+.|+++     +++..||||++|+.+....+-.
T Consensus       150 rv~~~~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~-----~~~~~GIvT~~dl~~~v~~~g~  210 (610)
T COG2905         150 RVGEVKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDD-----SGPLLGIVTRKDLRSRVIADGR  210 (610)
T ss_pred             HHHHHhcCCCcccCccCcHHHHHHHHHhcCCCeEEEEcC-----CCCccceeehHHHHHHHHhcCC
Confidence            456778899999999999999999999999999999987     5679999999999988775433

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=96.88  E-value=0.003  Score=51.40  Aligned_cols=49  Identities=29%  Similarity=0.326  Sum_probs=42.7

Q ss_pred             CCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHHHh
Q 013262          378 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL  432 (447)
Q Consensus       378 ~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~~~  432 (447)
                      ++.++++++++.++.+.|.+.+.+.+||+|+      ++++|++|++|+.+...+
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~------~~~~G~v~~~dl~~~~~~   50 (110)
T cd04609           2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD------GRVVGSIDESDLLDALIE   50 (110)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCceeeEeeC------CeeEEEEeHHHHHHHHhc
Confidence            3568899999999999999999999999984      579999999999986543

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=96.86  E-value=0.0026  Score=66.44  Aligned_cols=58  Identities=24%  Similarity=0.364  Sum_probs=49.8

Q ss_pred             ccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCC-CCcEEEEEeHHHHHH
Q 013262          368 YIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAG-VSPVVGILTRQDLRA  428 (447)
Q Consensus       368 ~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g-~~~lvGIITr~DLl~  428 (447)
                      ...+++.|.+++.++++++++.++.++|.+.+.+.+||+|+   +. .++++|+||++|+..
T Consensus        79 Vk~~~~~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~---~~~~~~lvGIVt~rDL~~  137 (450)
T TIGR01302        79 VKRAENGIISDPVTISPETTVADVLELMERKGISGIPVVED---GDMTGKLVGIITKRDIRF  137 (450)
T ss_pred             hccccCceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeC---CCCCCeEEEEEEHHHHhh
Confidence            34566778889999999999999999999999999999987   10 058999999999975

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=96.83  E-value=0.0025  Score=52.88  Aligned_cols=56  Identities=11%  Similarity=0.124  Sum_probs=46.6

Q ss_pred             cccccccccCCCCeeEecCCCCHHHHHHHHhcCCCC---eEEEecCCCCCCCCCCCCCceEEEEEeHHHHHH
Q 013262          252 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHN---GFPVLDEGVVPPSGLANVATELHGLILRAHLVL  320 (447)
Q Consensus       252 ~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~---~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~  320 (447)
                      +.+++++|.+  ++..+++++++.++++.|.+.+..   ..|||+++           ++++|+|+..|+.+
T Consensus        60 ~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~-----------~~~~Gvvs~~di~~  118 (119)
T cd04598          60 KKPVSEVMDP--DPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEE-----------GRYLGIGTVKDLLR  118 (119)
T ss_pred             CCcHHHhcCC--CcEEecCCCCHHHHHHHHHcCCcccccccEEEeeC-----------CeEEEEEEHHHHhc
Confidence            4568899988  888999999999999999877642   34688776           89999999999853

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=96.82  E-value=0.0018  Score=68.42  Aligned_cols=60  Identities=18%  Similarity=0.336  Sum_probs=53.3

Q ss_pred             cccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHH
Q 013262          252 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLAL  322 (447)
Q Consensus       252 ~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L  322 (447)
                      +.+++|+|++..+++++++++++.++.++|.+++.+.+||||++           ++++|+|+++|+.+..
T Consensus       158 ~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~-----------g~liGIIT~~DIl~~~  217 (495)
T PTZ00314        158 STPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDN-----------GELVALVSRSDLKKNR  217 (495)
T ss_pred             CCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCC-----------CcEEEEEEehHhhhcc
Confidence            45789999864478899999999999999999999999999987           8999999999998754

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=96.81  E-value=0.0023  Score=66.06  Aligned_cols=58  Identities=14%  Similarity=0.179  Sum_probs=50.0

Q ss_pred             CccccccC--CCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHHH
Q 013262          370 DLHPLTNT--TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI  431 (447)
Q Consensus       370 dl~~im~~--~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~~  431 (447)
                      .++++|.+  ++++++.+++++++.+.+.+.+..++||+++    +.++++|+|+.+|++.+..
T Consensus       192 ~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~----~~d~ivGiv~~kDll~~~~  251 (408)
T TIGR03520       192 DTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKE----TIDNITGVLYIKDLLPHLN  251 (408)
T ss_pred             EeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcC----CCCceEEEEEHHHHHhHhc
Confidence            46778876  6789999999999999999999999999976    2357999999999997543

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.63  E-value=0.0042  Score=50.48  Aligned_cols=53  Identities=21%  Similarity=0.313  Sum_probs=46.4

Q ss_pred             cccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHH
Q 013262          254 TVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL  320 (447)
Q Consensus       254 ~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~  320 (447)
                      .+.++|.+  ++.++++++++.++.+.+.+.+.+.+||+++            ++++|+|+.+|+..
T Consensus        53 ~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~------------~~~~G~it~~d~~~  105 (106)
T cd04638          53 QLALLMTR--DPPTVSPDDDVKEAAKLMVENNIRRVPVVDD------------GKLVGIVTVADIVR  105 (106)
T ss_pred             hHHHHhcC--CCceECCCCCHHHHHHHHHHcCCCEEEEEEC------------CEEEEEEEHHHhhc
Confidence            45677877  7888999999999999999999999999985            68999999999853

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=96.60  E-value=0.0038  Score=60.93  Aligned_cols=50  Identities=22%  Similarity=0.205  Sum_probs=42.2

Q ss_pred             CCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHHHh
Q 013262          377 TTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL  432 (447)
Q Consensus       377 ~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~~~  432 (447)
                      ..+.++.+++++.+......+.+. .++|+|+     +++++|+|++..++.++.+
T Consensus       335 ~~~~~v~~d~~~~~~~~~~~~~~~-p~aVvde-----~~r~vG~i~~~~vl~aL~~  384 (386)
T COG4175         335 DDVLTVDADTPLSEILARIRQAPC-PVAVVDE-----DGRYVGIISRGELLEALAR  384 (386)
T ss_pred             ccccccCccchHHHHHHHHhcCCC-ceeEEcC-----CCcEEEEecHHHHHHHHhc
Confidence            456688999999999998887776 5789988     6789999999999988754

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.60  E-value=0.0045  Score=53.73  Aligned_cols=54  Identities=19%  Similarity=0.450  Sum_probs=48.5

Q ss_pred             cccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHH
Q 013262          252 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLV  319 (447)
Q Consensus       252 ~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~  319 (447)
                      ..++.++|.+  ++.++++++++.++++.+.+.+...+||+++            ++++|+|+.+|++
T Consensus        88 ~~~v~~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~------------~~~~Gvvt~~dl~  141 (143)
T cd04634          88 KMKVRDIMTK--KVITISPDASIEDAAELMVRHKIKRLPVVED------------GRLVGIVTRGDII  141 (143)
T ss_pred             cCCHHHHcCC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEEC------------CEEEEEEEHHHhh
Confidence            4567889988  8899999999999999999999999999986            6899999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=96.56  E-value=0.0046  Score=60.91  Aligned_cols=58  Identities=14%  Similarity=0.209  Sum_probs=50.2

Q ss_pred             cCccccccC--CCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHH
Q 013262          369 IDLHPLTNT--TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFN  430 (447)
Q Consensus       369 idl~~im~~--~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~  430 (447)
                      ..++++|.+  ...++++++++.++.+.+.+.+..++||+++   + .++++|+|+.+|++...
T Consensus        67 ~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~---~-~d~iiGiv~~kDll~~~  126 (292)
T PRK15094         67 QRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISE---D-KDHIEGILMAKDLLPFM  126 (292)
T ss_pred             CEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecC---C-CCcEEEEEEHHHHHhHh
Confidence            357888987  5789999999999999999999999999986   2 25799999999998654

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=96.55  E-value=0.0082  Score=61.32  Aligned_cols=49  Identities=12%  Similarity=0.270  Sum_probs=41.4

Q ss_pred             cCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHHH
Q 013262          376 NTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI  431 (447)
Q Consensus       376 ~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~~  431 (447)
                      .....++++++++.+++....+.+.. ++|+|+      |+++|+|++.++++++.
T Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~------~~~~g~~~~~~~~~~~~  380 (382)
T TIGR03415       332 EAAPTVINPDTLMRDVLAARHRTGGA-ILLVEN------GRIVGVIGDDNIYHALL  380 (382)
T ss_pred             cccCcccCCCCcHHHHHHHHhcCCCC-eEEeeC------CeEEEEEeHHHHHHHHh
Confidence            35667899999999999998887764 788874      67999999999998765

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=96.33  E-value=0.005  Score=63.84  Aligned_cols=60  Identities=15%  Similarity=0.324  Sum_probs=55.6

Q ss_pred             cccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHh
Q 013262          252 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK  324 (447)
Q Consensus       252 ~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~  324 (447)
                      +..++|+|.+  +++++.++++.+++.+++++++.-..||||++           ++++|+|+-+|+...++.
T Consensus       195 ~~~i~~im~~--~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~-----------~~LiG~itiDDiidvi~e  254 (451)
T COG2239         195 DELLKDLMED--DVVSVLADDDQEEVARLFEKYDLLAVPVVDED-----------NRLIGIITIDDIIDVIEE  254 (451)
T ss_pred             HhHHHHHhcc--cceeecccCCHHHHHHHHHHhCCeecceECCC-----------CceeeeeeHHHHHHHHHH
Confidence            4568899999  88999999999999999999999999999998           899999999999998865

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=96.11  E-value=0.012  Score=59.67  Aligned_cols=57  Identities=23%  Similarity=0.317  Sum_probs=50.2

Q ss_pred             cccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHh
Q 013262          254 TVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK  324 (447)
Q Consensus       254 ~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~  324 (447)
                      .+++.|.+  ++.++++++++.+++..+.++++. +||+|++           ++++|+|++.+++..+..
T Consensus       303 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~-----------~~~~g~i~~~~~~~~~~~  359 (363)
T TIGR01186       303 GLQDVLID--DIYTVDAGTLLRETVRKVLKAGIK-VPVVDED-----------QRLVGIVTRGSLVDALYD  359 (363)
T ss_pred             chhhhhcc--CCceECCCCcHHHHHHHHHhCCCC-EEEECCC-----------CcEEEEEEHHHHHHHHHh
Confidence            35677777  778899999999999999999988 9999987           999999999999987754

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=95.40  E-value=0.0087  Score=62.87  Aligned_cols=97  Identities=23%  Similarity=0.163  Sum_probs=77.1

Q ss_pred             HHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHhhc-----------c-CCcchHHHHHHHHHHHHHhhhchhHHH
Q 013262          127 ILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGS-----------Y-TNIDQGLYAVLGAASLMAGSMRMTVSL  194 (447)
Q Consensus       127 ~~k~~~~~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~-----------~-~~~~~~~~a~~G~aa~~~g~~~~p~s~  194 (447)
                      ++|++-.+.+.+.|.-.|--.|.+-.||++|..+|+-=..           + ..-+-.-+..+|+||..+++.|+|+.+
T Consensus       190 ~~Ki~Gvi~sV~gGL~~GKEGPMIHsGa~Vaagl~QG~S~~~r~~~r~fr~FrnDrdrRD~VscGaAAGVaAAF~APvGG  269 (762)
T KOG0474|consen  190 IVKILGVIFSVAGGLAVGKEGPMIHSGSVVAAGLGQGGSTSLRKDWRWFRYFRNDRDRRDLVSCGAAAGVAAAFRAPVGG  269 (762)
T ss_pred             HHhHhhhhhhhhhhhhccCcCCeeehhHHHHhcccCCCccchhhhhhhhhhhcccchhhhhhhcchHHhHHHHhCCCccc
Confidence            3899999999999999999999999999999999876332           0 234566789999999999999999999


Q ss_pred             HHHHHHhhcCC---chHHHHHHHHHHHHHHHh
Q 013262          195 CVIFLELTNNL---LLLPITMIVLLIAKTVGD  223 (447)
Q Consensus       195 ~vi~~E~t~~~---~~~~p~~ia~~va~~v~~  223 (447)
                      +++.+|--.+.   .++.=+.++++++.++-+
T Consensus       270 vLFaLEE~aS~Wnq~L~WR~fFss~i~~f~l~  301 (762)
T KOG0474|consen  270 VLFALEEGASWWNQALLWRTFFSSAIVAFVLR  301 (762)
T ss_pred             eEEEechhhHHHHhhHHHHHHHHhHHHHHhHH
Confidence            99999965543   355555566555555554

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=95.11  E-value=0.047  Score=56.20  Aligned_cols=57  Identities=18%  Similarity=0.336  Sum_probs=48.3

Q ss_pred             cccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHh
Q 013262          254 TVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK  324 (447)
Q Consensus       254 ~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~  324 (447)
                      .+++.+.+  +..++++++++.+++..+.++... +||||++           ++++|+|++.++++.+..
T Consensus       338 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~-----------~~~~g~~~~~~~~~~~~~  394 (400)
T PRK10070        338 GLDAALID--APLAVDAQTPLSELLSHVGQAPCA-VPVVDED-----------QQYVGIISKGMLLRALDR  394 (400)
T ss_pred             chhhhhcc--CCceeCCCCCHHHHHHHHHhCCCc-EEEECCC-----------CcEEEEEEHHHHHHHHHh
Confidence            35566666  678899999999999999886655 9999987           999999999999988754

>PRK11573 hypothetical protein; Provisional

Probab=94.66  E-value=0.086  Score=54.53  Aligned_cols=57  Identities=2%  Similarity=0.005  Sum_probs=47.1

Q ss_pred             CccccccC--CCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHH
Q 013262          370 DLHPLTNT--TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFN  430 (447)
Q Consensus       370 dl~~im~~--~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~  430 (447)
                      .++++|.+  +...++.+++++++.+.+.+.+..++||.++    +.+.++|+|..+|++...
T Consensus       188 ~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~----~~D~IiGiv~~kDll~~~  246 (413)
T PRK11573        188 TVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRD----SLDDAISMLRVREAYRLM  246 (413)
T ss_pred             ChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcC----CCCceEEEEEHHHHHHHh
Confidence            35556654  4578899999999999999999999999975    245699999999999754

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=94.24  E-value=0.051  Score=54.59  Aligned_cols=57  Identities=19%  Similarity=0.340  Sum_probs=51.1

Q ss_pred             cccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHH
Q 013262          252 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLA  321 (447)
Q Consensus       252 ~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~  321 (447)
                      ...+.|+|++  +.++.+...++.++-++|++.+...+||||++           +.++-+|+|.||.+.
T Consensus       170 ~~~~~~vmt~--~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~-----------gelva~~~rtDl~k~  226 (503)
T KOG2550|consen  170 SLLVSDVMTK--NPVTGAQGITLKEANEILKKIKKGKLPVVDDK-----------GELVAMLSRTDLMKN  226 (503)
T ss_pred             cchhhhhccc--ccccccccccHHHHHHHHHhhhcCCcceeccC-----------Cceeeeeehhhhhhh
Confidence            4567899999  66888999999999999999999999999998           899999999999763

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=93.69  E-value=0.15  Score=53.07  Aligned_cols=60  Identities=13%  Similarity=0.158  Sum_probs=50.3

Q ss_pred             CccccccC--CCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHHHhh
Q 013262          370 DLHPLTNT--TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILT  433 (447)
Q Consensus       370 dl~~im~~--~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~~~~  433 (447)
                      .++++|.+  +...++.+.+..++.+.+.+.+..++||+++    +.+.++|+|+.||++.+..+.
T Consensus       207 ~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~----~~D~iiGiv~~Kdll~~~~~~  268 (429)
T COG1253         207 TVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDG----DLDNIIGIVHVKDLLRALLDG  268 (429)
T ss_pred             EeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcC----CCCcEEEEEEHHHHHHHHhcC
Confidence            45666665  4567888999999999999999999999984    245699999999999988766

>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=92.84  E-value=0.089  Score=56.66  Aligned_cols=68  Identities=13%  Similarity=0.115  Sum_probs=57.5

Q ss_pred             hccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHHHhhhcCc
Q 013262          367 MYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTAFPH  437 (447)
Q Consensus       367 ~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~~~~~~~~  437 (447)
                      ..+.+.++|.++..++..+++..+..+.+....+|.+|+||+   .+.--++|.|.|+.|.....++.-++
T Consensus       586 h~v~VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s---~esmiLlGSV~R~~L~~ll~~~ig~~  653 (931)
T KOG0476|consen  586 HTVKVEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVES---KESMILLGSVARRYLTALLQRHIGPE  653 (931)
T ss_pred             eEEEeeeeccccceeeeccCcHHHHHHHHHhCccceeccccC---cccceeeehhHHHHHHHHHHhhcCcc
Confidence            345688999999999999999999999888777999999987   33456999999999998887755444

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=90.80  E-value=0.092  Score=55.50  Aligned_cols=100  Identities=14%  Similarity=0.104  Sum_probs=73.9

Q ss_pred             HHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHhhccCCcch--HHHHHHHHHHHHHhhhchhHHHHHHHHHhhc
Q 013262          126 FILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYTNIDQ--GLYAVLGAASLMAGSMRMTVSLCVIFLELTN  203 (447)
Q Consensus       126 ~~~k~~~~~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~~~--~~~a~~G~aa~~~g~~~~p~s~~vi~~E~t~  203 (447)
                      +++|-++.++++++|.+-|-..|+.-++.+.|.++..+++.+.....  .-+-...|||..+.+++||+.++++.+|-..
T Consensus       181 l~iKsVal~lsvaSGLSlGKEGP~VHiA~c~g~~~s~~f~~~~~~e~~~reilsAaaAaGvavaFgAPIGGVlFslEev~  260 (696)
T KOG0475|consen  181 LLIKSVALCLSVASGLSLGKEGPSVHIATCIGNIFSKIFPKYRLNEAKKREILSAAAAAGVAVAFGAPIGGVLFSLEEVS  260 (696)
T ss_pred             HhhhhhhheeeeccccccCCCCCceeeeechhhhHhhhhhhhccchhHHHHHHHHHhhccchhhcCCccceeeeehhhhh
Confidence            46799999999999999999999999999999999999987532222  2333445566667789999999999999765


Q ss_pred             CCc---hHHHHHHHHHHHHHHHhhc
Q 013262          204 NLL---LLPITMIVLLIAKTVGDSF  225 (447)
Q Consensus       204 ~~~---~~~p~~ia~~va~~v~~~l  225 (447)
                      .+.   .+.--.+++++|..+.+.+
T Consensus       261 ~~fp~ktlw~sff~aLsAv~~L~~i  285 (696)
T KOG0475|consen  261 YYFPLKTLWRSFFCALSAVTALRSI  285 (696)
T ss_pred             hcCCccchHHHHHHHHHHHHHHeee
Confidence            321   3333445555555555544

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=89.25  E-value=0.83  Score=46.74  Aligned_cols=53  Identities=13%  Similarity=0.188  Sum_probs=42.6

Q ss_pred             ccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHH
Q 013262          255 VGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALK  323 (447)
Q Consensus       255 v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~  323 (447)
                      +.+ +.+  +..++++++++.+++....++.+ .+||+|+            |+++|+|++.+++..|.
T Consensus       328 ~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~------------~~~~g~~~~~~~~~~~~  380 (382)
T TIGR03415       328 VES-LEA--APTVINPDTLMRDVLAARHRTGG-AILLVEN------------GRIVGVIGDDNIYHALL  380 (382)
T ss_pred             hhh-hcc--cCcccCCCCcHHHHHHHHhcCCC-CeEEeeC------------CeEEEEEeHHHHHHHHh
Confidence            444 444  67789999999999998887665 4788875            89999999999988764

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]

Probab=86.94  E-value=0.87  Score=48.20  Aligned_cols=134  Identities=17%  Similarity=0.106  Sum_probs=84.8

Q ss_pred             cccccccccccCCCCeeEecCCCCHH-HHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhh
Q 013262          250 MRTLTVGELIDAKPPVITLSGIEKVS-QIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFL  328 (447)
Q Consensus       250 l~~l~v~diM~~~~~vv~l~~~~tv~-~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~  328 (447)
                      +..+.++|+|++-.++..+..+..+. +....+.+.+|+.+||.+.+.          ...+|......+..++....  
T Consensus       201 l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~----------~~~i~~~L~~~~~~~~~~~~--  268 (498)
T KOG2118|consen  201 LTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQEP----------KNKIGGLLVMNLLRLLQVEV--  268 (498)
T ss_pred             HHHHHHHHhccchhhheeeccccccchHHHhhHhhcCcceeeeccCcc----------cchhhHHHHhhhhhhhcccc--
Confidence            56788999999855666666666655 444556688999999998751          33344422222222221100  


Q ss_pred             hhcccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeC
Q 013262          329 QEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPK  408 (447)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~  408 (447)
                                                          .....++...+......+++++++.+..+.|++...+.+ |+.+
T Consensus       269 ------------------------------------~~~~~~v~~~~~~~l~~vp~~~~~~~~l~~~~~~~~H~~-~v~~  311 (498)
T KOG2118|consen  269 ------------------------------------PLEPLPVSESALLRLPLVPENMPLLDLLNEFQKGKSHMA-VVRN  311 (498)
T ss_pred             ------------------------------------ccccccchhhhccccccCCCcccHHHHHHHHhhhhceeE-EEec
Confidence                                                001234555566677788999999999999997766555 5443


Q ss_pred             cccCCCCcEEEEEeHHHHHHHHHhhhcCcc
Q 013262          409 YEAAGVSPVVGILTRQDLRAFNILTAFPHL  438 (447)
Q Consensus       409 ~~~~g~~~lvGIITr~DLl~~~~~~~~~~~  438 (447)
                           ..--+++++..|+ ....++...+.
T Consensus       312 -----~~~~~~~~~l~~~-~~~~~ev~de~  335 (498)
T KOG2118|consen  312 -----GHVDIFVLTLEDL-EEVVKEVEDEE  335 (498)
T ss_pred             -----CCcceeeEeccch-hhhcceecccc
Confidence                 2347999999998 65555544443

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=86.77  E-value=0.19  Score=47.13  Aligned_cols=59  Identities=15%  Similarity=0.192  Sum_probs=48.1

Q ss_pred             ccccccC--CCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHHHhh
Q 013262          371 LHPLTNT--TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILT  433 (447)
Q Consensus       371 l~~im~~--~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~~~~  433 (447)
                      ++++|-+  ..+++..+.++.+....+......+.||+.+    .+..+.||+-.|||++++...
T Consensus        69 vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~e----dkD~v~GIL~AKDLL~~~~~~  129 (293)
T COG4535          69 VRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISE----DKDHVEGILLAKDLLPFMRSD  129 (293)
T ss_pred             HhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccC----CchhhhhhhhHHHHHHHhcCC
Confidence            3444433  3468889999999999999999999999976    256799999999999987654

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=83.64  E-value=2.3  Score=42.10  Aligned_cols=49  Identities=29%  Similarity=0.415  Sum_probs=40.7

Q ss_pred             CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHh
Q 013262          264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK  324 (447)
Q Consensus       264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~  324 (447)
                      ++.++..++++.+++..+.+.. ..+||||++           ++++|+|++.+++.+|..
T Consensus       336 ~~~~v~~d~~~~~~~~~~~~~~-~p~aVvde~-----------~r~vG~i~~~~vl~aL~~  384 (386)
T COG4175         336 DVLTVDADTPLSEILARIRQAP-CPVAVVDED-----------GRYVGIISRGELLEALAR  384 (386)
T ss_pred             cccccCccchHHHHHHHHhcCC-CceeEEcCC-----------CcEEEEecHHHHHHHHhc
Confidence            5677888899999888887654 458899988           999999999999987753

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=80.07  E-value=3.5  Score=39.69  Aligned_cols=41  Identities=29%  Similarity=0.240  Sum_probs=33.6

Q ss_pred             CCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHH
Q 013262          384 ESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAF  429 (447)
Q Consensus       384 ~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~  429 (447)
                      ......+++..+...+...+||+|+     +|+++|.||+.+++.+
T Consensus       268 ~~~~~~~~ls~~~~~~~~~~~Vvd~-----~g~~~G~vt~~~l~~~  308 (309)
T COG1125         268 EGFVDRDALSDFLARGRSVLPVVDE-----DGRPLGTVTRADLLDE  308 (309)
T ss_pred             cchhhHHHHHHHHhcCCceeEEECC-----CCcEeeEEEHHHHhhh
Confidence            3444555788888899999999998     5789999999999864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	447
3org_A	632	Crystal Structure Of A Eukaryotic Clc Transporter L		4e-10

>pdb|3ORG|A Chain A, Crystal Structure Of A Eukaryotic Clc Transporter Length = 632

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 89/185 (48%), Gaps = 12/185 (6%)
Query: 116 EFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSY--TNIDQG 173
            F  + +++  I+  IL  ++ G+ +P+G+F+P  L+G+ +GRL G  M       I  G
Sbjct: 315 HFGWTELILMPIIKFILVALSIGLPLPAGVFVPSFLIGAGFGRLYGELMRVVFGNAIVPG 374
Query: 174 LYAVLGAASLMAGSMRMTVSLCVIFXXXXXXXXXXXXXXXXXXXAKTVGDSFNPSIYEII 233
            YAV+GAA+  AG  R  +S  VI                    A  VG++FN S+YE +
Sbjct: 375 SYAVVGAAAFTAGVTR-ALSCAVIIFEVTGQIRHLVPVLISVLLAVIVGNAFNRSLYETL 433
Query: 234 LELKGLPFL-----DAHPEPWMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNG 288
           + +K LP++     D  PE  M    +   I+ +P +   S  + +  I++   N     
Sbjct: 434 VLMKHLPYMPILRRDRSPE--MTAREIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLV-- 489
Query: 289 FPVLD 293
           FPV+D
Sbjct: 490 FPVID 494

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	447
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	6e-80
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	6e-26
3nd0_A	466	SLL0855 protein; CLC family CL-/H+ antiporter, CLC	2e-14
1ots_A	465	Voltage-gated CLC-type chloride channel ERIC; CLC	4e-14
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	3e-09
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	3e-09
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	4e-08
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	6e-07
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	7e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	3e-05
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	3e-05
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	4e-05
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	6e-05
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	5e-05
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	1e-04
3ddj_A	296	CBS domain-containing protein; structural genomics	2e-04
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	3e-04
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	4e-04

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae} Length = 632

 Score =  258 bits (662), Expect = 6e-80
 Identities = 90/426 (21%), Positives = 152/426 (35%), Gaps = 69/426 (16%)

Query: 17  NHSSTCIFTLFHCRKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGR 76
                 I+ L        ++  L   V++F S  QY                        
Sbjct: 253 IRCVRSIYELRMRHYPGTNRYFLVGVVALFASALQYPFRLF------------------- 293

Query: 77  SGNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLIT 136
                    P    NDL   +     D             F  + +++  I+  IL  ++
Sbjct: 294 ------ALDPRATINDLFKAVPLYQTD------------HFGWTELILMPIIKFILVALS 335

Query: 137 FGIAVPSGLFLPIILMGSAYGRLLGMAMGSY--TNIDQGLYAVLGAASLMAGSMRMTVSL 194
            G+ +P+G+F+P  L+G+ +GRL G  M       I  G YAV+GAA+  AG  R  +S 
Sbjct: 336 IGLPLPAGVFVPSFLIGAGFGRLYGELMRVVFGNAIVPGSYAVVGAAAFTAGVTR-ALSC 394

Query: 195 CVIFLELTNNL-LLLPITMIVLLIAKTVGDSFNPSIYEIILELKGLPFLDAHPEPWMRTL 253
            VI  E+T  +  L+P+ +I +L+A  VG++FN S+YE ++ +K LP++          +
Sbjct: 395 AVIIFEVTGQIRHLVPV-LISVLLAVIVGNAFNRSLYETLVLMKHLPYMPILRRDRSPEM 453

Query: 254 TVGELIDAKPPVITLSGIEKVSQIVDVLRNTT-HNGFPVLDEGVVPPSGLANVATELHGL 312
           T  E++        L    +   I  +L        FPV+D               L G 
Sbjct: 454 TAREIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDA-----------NGYLLGA 502

Query: 313 ILRAHLVLALKKKWFLQEKRRTEE---------WEVREKFSWVELAEREGKIEEVAVTSE 363
           I R  +V  L+       +                       V+         +   T+ 
Sbjct: 503 ISRKEIVDRLQHVLEDVPEPIAGHRTLVLLDAADLSENIEGLVDETPSGEHSSKGKRTAT 562

Query: 364 EMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 423
            +E    L    + +P  V     V +   LF  +    + V  +        +VGI+ R
Sbjct: 563 VLEPTSSLVVPCDVSPIVVTSYSLVRQLHFLFVMLMPSMIYVTER------GKLVGIVER 616

Query: 424 QDLRAF 429
           +D+   
Sbjct: 617 EDVAYG 622

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A* Length = 185

 Score =  103 bits (257), Expect = 6e-26
 Identities = 32/184 (17%), Positives = 67/184 (36%), Gaps = 33/184 (17%)

Query: 247 EPWMRTLTVGEL----IDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGL 302
           E +       ++     +     +       V  +  ++  TT++GFPV+          
Sbjct: 5   EEFAHKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQ---- 60

Query: 303 ANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTS 362
                 L G +LR  L+++++                R+K   V         E      
Sbjct: 61  -----RLVGFVLRRDLIISIENA--------------RKKQDGVVSTSIIYFTEHSPPLP 101

Query: 363 EEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILT 422
                 + L  + + +P+TV +   +   + +FR++GLR  LV           ++GI+T
Sbjct: 102 PYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTHN------GRLLGIIT 155

Query: 423 RQDL 426
           ++D+
Sbjct: 156 KKDV 159

>3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog, transport protein; 3.20A {Synechocystis} PDB: 3q17_A Length = 466

 Score = 74.3 bits (183), Expect = 2e-14
 Identities = 26/137 (18%), Positives = 61/137 (44%), Gaps = 4/137 (2%)

Query: 116 EFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSY---TNIDQ 172
           +   S++++ F    +L LI +G     G+F P++ + S     +             + 
Sbjct: 319 QSHFSTLILVFCGRFLLTLICYGSGAIGGIFAPMLGIASIVSVAMARHFHLLFPSQIPEP 378

Query: 173 GLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNP-SIYE 231
            + A+ G  +L+A ++R  ++  ++ +E+T+N  ++   ++  L+A  V ++     IY 
Sbjct: 379 AVMAIAGMGALVAATVRAPLTAILLTIEMTDNYFVILPLLVTCLVASVVAEALGGKPIYT 438

Query: 232 IILELKGLPFLDAHPEP 248
           ++LE            P
Sbjct: 439 VLLERTLAKQNRGSLVP 455

>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel, FAB complex, membrane protein; 2.51A {Escherichia coli} SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A 2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ... Length = 465

 Score = 73.2 bits (180), Expect = 4e-14
 Identities = 31/143 (21%), Positives = 61/143 (42%), Gaps = 8/143 (5%)

Query: 97  LLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAY 156
                 + +    + N         ++  F+   I  L+ F    P G+F P++ +G+  
Sbjct: 312 TSGGGFNLIPIATAGNFSMGM----LVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVL 367

Query: 157 GRLLGMAMGSY---TNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMI 213
           G   GM         +++ G +A+ G  +L+A S+R  ++  ++ LE+T+N  L+   +I
Sbjct: 368 GTAFGMVAVELFPQYHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMII 427

Query: 214 VLLIAKTVGDSFNP-SIYEIILE 235
             L A  +        +Y  IL 
Sbjct: 428 TGLGATLLAQFTGGKPLYSAILA 450

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens} Length = 164

 Score = 55.0 bits (132), Expect = 3e-09
 Identities = 27/188 (14%), Positives = 61/188 (32%), Gaps = 46/188 (24%)

Query: 240 PFLDAHPEPWMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPP 299
           P +          + V   +     + TL+    + ++V V+ +T    +P+++      
Sbjct: 1   PRILGRNIG-SHHVRVEHFM--NHSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQ- 56

Query: 300 SGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVA 359
                    L G++ RA LV AL+ +   +     +  +                     
Sbjct: 57  --------ILVGIVQRAQLVQALQAEPPSRAPGHQQCLQDILARGCP------------- 95

Query: 360 VTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVG 419
                          T     T+    ++ +A  LF+ + L+ L V     + G    VG
Sbjct: 96  ---------------TEPVTLTLFSETTLHQAQNLFKLLNLQSLFVT----SRGR--AVG 134

Query: 420 ILTRQDLR 427
            ++  +++
Sbjct: 135 CVSWVEMK 142

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} Length = 180

 Score = 55.1 bits (133), Expect = 3e-09
 Identities = 36/178 (20%), Positives = 63/178 (35%), Gaps = 28/178 (15%)

Query: 253 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGL 312
            TVG+ +  +  +  +     V   +++L      G PV+D+              L G+
Sbjct: 4   YTVGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDN-----------WTLVGV 52

Query: 313 ILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLH 372
           +    L+         Q              ++ EL +   K     V  + M       
Sbjct: 53  VSDYDLLALDSISGRSQNDTNLFPDVDSTWKTFNELQKLISKTYGKVV-GDLM------- 104

Query: 373 PLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQD-LRAF 429
                +P  V +S ++  A  L  +   R L VV   +A G   ++GILTR + +RA 
Sbjct: 105 ---TPSPLVVRDSTNLEDAARLLLETKFRRLPVV---DADGK--LIGILTRGNVVRAA 154

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 Length = 157

 Score = 51.5 bits (124), Expect = 4e-08
 Identities = 27/183 (14%), Positives = 51/183 (27%), Gaps = 47/183 (25%)

Query: 250 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEG--VVPPSGLANVAT 307
           M+   V +LI        +     + +IVD +          +     +V          
Sbjct: 13  MKVKDVCKLI--SLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLV---------- 60

Query: 308 ELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEM 367
              G+I   HL+      +F    +        ++              E+        M
Sbjct: 61  ---GMIPVMHLLKVSGFHFFGFIPKEELIRSSMKRLI-------AKNASEI--------M 102

Query: 368 YIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQD-L 426
                      P  V     + +A+ L     ++ + VV   +  G   +VG L   + L
Sbjct: 103 ---------LDPVYVHMDTPLEEALKLMIDNNIQEMPVV---DEKGE--IVGDLNSLEIL 148

Query: 427 RAF 429
            A 
Sbjct: 149 LAL 151

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1 Length = 250

 Score = 49.7 bits (117), Expect = 6e-07
 Identities = 12/67 (17%), Positives = 28/67 (41%), Gaps = 7/67 (10%)

Query: 362 SEEMEMYIDLHPLT-NTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGI 420
             E  + ++      + +P+ ++E  S+ K   LF  +GL    V           +VG+
Sbjct: 181 QREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTSM------GKLVGV 234

Query: 421 LTRQDLR 427
           +   +++
Sbjct: 235 VALAEIQ 241

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157

 Score = 45.1 bits (107), Expect = 7e-06
 Identities = 36/182 (19%), Positives = 57/182 (31%), Gaps = 52/182 (28%)

Query: 250 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATEL 309
              +TV   +     V  +     +   + VL  T ++  PVLD              +L
Sbjct: 8   FMQMTVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTS-----------YKL 56

Query: 310 HGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYI 369
           HGLI    ++ A+                  E+  +  L     K+EEV      M    
Sbjct: 57  HGLISMTMMMDAILGL---------------ERIEFERLETM--KVEEV------M---- 89

Query: 370 DLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQD-LRA 428
                 N     +    S+ KA+ L   V    + V             GI TR++ L+ 
Sbjct: 90  ------NRNIPRLRLDDSLMKAVGLI--VNHPFVCVENDDGY-----FAGIFTRREVLKQ 136

Query: 429 FN 430
            N
Sbjct: 137 LN 138

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 2e-05
 Identities = 60/414 (14%), Positives = 114/414 (27%), Gaps = 121/414 (29%)

Query: 1   MLGFTSKTRFTVKKAENHSSTC-----IF--TLFHCRK-GKMHKLLLALSVSVFTSVCQY 52
           +LG   KT   +    ++   C     IF   L +C     + ++L  L   +  +    
Sbjct: 158 VLGS-GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR 216

Query: 53  CLPFLADCKACDPSFPETCPTNGRSGNFKQFNCPNGHYNDLATL---------------- 96
                      D S       +      ++      + N L  L                
Sbjct: 217 S----------DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC 266

Query: 97  --LLTTNDDAVRNIFSSNTPTE---------FQPSSILIFFILYCILGLITFGIAVP--- 142
             LLTT    V +  S+ T T            P  +    + Y  L      +  P   
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY--LDCRPQDL--PREV 322

Query: 143 ---SGLFLPIILMGSAYGRLL--GMAMGSY---TNIDQGLYAVLGA--ASLMAGSMRMTV 192
              +   L II         +  G+A        N D+ L  ++ +    L     R   
Sbjct: 323 LTTNPRRLSII------AESIRDGLATWDNWKHVNCDK-LTTIIESSLNVLEPAEYRKMF 375

Query: 193 SLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILELKGLPFLDAHPEPWMRT 252
               +F    +      I  I+L +        +     ++ +L     ++  P+    T
Sbjct: 376 DRLSVFPPSAH------IPTILLSLIWFDVIKSDVM--VVVNKLHKYSLVEKQPKE--ST 425

Query: 253 LTVGEL-IDAKPPVITLSGIEKVSQIVD---VLRNTTHNGF--PVLDEGVVPPSGLANVA 306
           +++  + ++ K  +     + +   IVD   + +    +    P LD             
Sbjct: 426 ISIPSIYLELKVKLENEYALHR--SIVDHYNIPKTFDSDDLIPPYLD------------- 470

Query: 307 TELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREK----FSWVELAEREGKIE 356
                    +H+   LK           E   +       F ++     E KI 
Sbjct: 471 ----QYFY-SHIGHHLKN------IEHPERMTLFRMVFLDFRFL-----EQKIR 508

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 1e-04
 Identities = 40/236 (16%), Positives = 67/236 (28%), Gaps = 76/236 (32%)

Query: 232 IILELKGLP----FLDAHPEP---WMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNT 284
             L  K       F++        ++ +    E     P ++T   IE+        R+ 
Sbjct: 69  WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ--PSMMTRMYIEQ--------RDR 118

Query: 285 THNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTE--------- 335
            +N   V  +  V                 R    L L++   L E R  +         
Sbjct: 119 LYNDNQVFAKYNVS----------------RLQPYLKLRQA--LLELRPAKNVLIDGVLG 160

Query: 336 ------------EWEVREKFS----WVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTP 379
                        ++V+ K      W+ L       E V      +EM   L    +   
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN-SPETV------LEMLQKLLYQIDPNW 213

Query: 380 YTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGIL----TRQDLRAFNI 431
            +  +  S  K  +   Q  LR LL    YE   +     +L      +   AFN+
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL-----VLLNVQNAKAWNAFNL 264

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150

 Score = 42.8 bits (101), Expect = 3e-05
 Identities = 34/182 (18%), Positives = 61/182 (33%), Gaps = 52/182 (28%)

Query: 250 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATEL 309
            + + V +L+ +   V  +     +   + VL  + ++  PVLD              +L
Sbjct: 12  FQQIFVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMY-----------KL 60

Query: 310 HGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYI 369
           HGLI  A ++  +                  E+  +  L E   K+E+V      M    
Sbjct: 61  HGLISTAMILDGILGL---------------ERIEFERLEEM--KVEQV------M---- 93

Query: 370 DLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQD-LRA 428
                       +    S AKA+ +   +    +  V +          GILTR+  L+ 
Sbjct: 94  ------KQDIPVLKLEDSFAKALEMT--IDHPFICAVNEDGY-----FEGILTRRAILKL 140

Query: 429 FN 430
            N
Sbjct: 141 LN 142

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 44.6 bits (105), Expect = 3e-05
 Identities = 35/234 (14%), Positives = 68/234 (29%), Gaps = 47/234 (20%)

Query: 250 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDE------GVVPPSGLA 303
           M++    +LI     ++      +V +    L        P+ D       G++  +   
Sbjct: 32  MKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFI 91

Query: 304 NVATELHGLILRAHLVLALKKKWFLQEKRRTEEWE----VREKFSWVELAER--EGKIEE 357
           N+    +   L     L   K    +E    + ++    +    S  +        KI  
Sbjct: 92  NILHRYYKSALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHR 151

Query: 358 VAVTSEEMEMYI------------------------------DLHPLTNTTPYTVIESMS 387
           + V   E    +                              +L   T      V  +  
Sbjct: 152 LPVIDPESGNTLYILTHKRILKFLKLFITEFPKPEFMSKSLEELQIGTYANIAMVRTTTP 211

Query: 388 VAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTAFPHLERS 441
           V  A+ +F Q  +  L VV   +  G   VV I ++ D+        + +L+ S
Sbjct: 212 VYVALGIFVQHRVSALPVV---DEKGR--VVDIYSKFDVINLAAEKTYNNLDVS 260

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 44.4 bits (105), Expect = 4e-05
 Identities = 21/180 (11%), Positives = 56/180 (31%), Gaps = 41/180 (22%)

Query: 250 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATEL 309
           M    +         ++T+     + + +  +    +   PV++ G            ++
Sbjct: 1   MFVRVMKIA--QNKKIVTVYPTTTIRKALMTMNENKYRRLPVVNAG----------NNKV 48

Query: 310 HGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYI 369
            G+I    +V  +           ++   +REK     LA     + E+   +       
Sbjct: 49  VGIITSMDIVDFM--------GGGSKYNLIREKHERNFLAAINEPVREIMEEN------- 93

Query: 370 DLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAF 429
                      T+ E+  + +A+  F    +    +V          ++ ++T +D+   
Sbjct: 94  ---------VITLKENADIDEAIETFLTKNVGGAPIV---NDENQ--LISLITERDVIRA 139

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 43.6 bits (103), Expect = 6e-05
 Identities = 29/190 (15%), Positives = 54/190 (28%), Gaps = 47/190 (24%)

Query: 241 FLDAHPEPWMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPS 300
            + A  +       + + I     VI  +  E++  +   +        PV+ EG     
Sbjct: 136 VIRALLDKIDENEVIDDYI--TRDVIVATPGERLKDVARTMVRNGFRRLPVVSEG----- 188

Query: 301 GLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAV 360
                   L G+I     +  L   W     +     E+              ++EE+  
Sbjct: 189 -------RLVGIITSTDFIKLLGSDWAFNHMQTGNVREITNV-----------RMEEIMK 230

Query: 361 TSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGI 420
                               T  E   + K   +     +  L VV   +      + GI
Sbjct: 231 RD----------------VITAKEGDKLKKIAEIMVTNDIGALPVV---DENLR--IKGI 269

Query: 421 LTRQD-LRAF 429
           +T +D L+ F
Sbjct: 270 ITEKDVLKYF 279

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 Length = 133

 Score = 41.8 bits (99), Expect = 5e-05
 Identities = 37/177 (20%), Positives = 60/177 (33%), Gaps = 58/177 (32%)

Query: 250 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATEL 309
           M    V E +  K  VI+++   K++ I  V+         V+D              + 
Sbjct: 1   MEEEIVKEYM--KTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDGN------------KP 46

Query: 310 HGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYI 369
            G+I    +V A+ K   L                       E K EE         M  
Sbjct: 47  VGIITERDIVKAIGKGKSL-----------------------ETKAEEF--------M-- 73

Query: 370 DLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDL 426
                   +  T+ E   +  A+ L RQ  +RHL VV   +  G   + GI++ +D+
Sbjct: 74  ------TASLITIREDSPITGALALMRQFNIRHLPVV---DDKGN--LKGIISIRDI 119

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A Length = 141

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 5/50 (10%)

Query: 377 TTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDL 426
            +P TV+++  V  A    R+  +RH++VV      G   +VG+L+ +DL
Sbjct: 78  NSPITVLDTDPVHVAAEKMRRHNIRHVVVV---NKNGE--LVGVLSIRDL 122

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 20/169 (11%), Positives = 37/169 (21%), Gaps = 46/169 (27%)

Query: 261 AKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 320
                  LS  +++      +         V +E +              GL+    L+ 
Sbjct: 26  MIKNPPILSKEDRLGSAFKKINEGGIGRIIVANEKIE-------------GLLTTRDLL- 71

Query: 321 ALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPY 380
                         E +                 I +                     P 
Sbjct: 72  -----------STVESYCKDSCSQGDLYHISTTPIIDYM----------------TPNPV 104

Query: 381 TVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAF 429
           TV  +     A+ +        L VV   +       VGI+T ++    
Sbjct: 105 TVYNTSDEFTAINIMVTRNFGSLPVV---DINDK--PVGIVTEREFLLL 148

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 31/178 (17%), Positives = 55/178 (30%), Gaps = 52/178 (29%)

Query: 254 TVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLI 313
           TVG+ +     V  +     +   + VL  T +   PVLD               LHGLI
Sbjct: 15  TVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPS-----------YRLHGLI 63

Query: 314 LRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHP 373
               ++ ++                  E+  + +L +    +EEV        M      
Sbjct: 64  GTNMIMNSIFGL---------------ERIEFEKLDQI--TVEEV--------M------ 92

Query: 374 LTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQD-LRAFN 430
              T    +  +  + K   +   +    + V    +        GI TR+  L+  N
Sbjct: 93  --LTDIPRLHINDPIMKGFGMV--INNGFVCVENDEQV-----FEGIFTRRVVLKELN 141

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144

 Score = 39.5 bits (93), Expect = 4e-04
 Identities = 25/185 (13%), Positives = 56/185 (30%), Gaps = 49/185 (26%)

Query: 247 EPWMRTLTVGEL-IDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANV 305
           E     + +G+L I  +  + +      V  ++ +L     +  P++DE           
Sbjct: 2   ETHFLKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDE----------- 50

Query: 306 ATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEM 365
              L  +     ++  +K   +                      +    + E  +   + 
Sbjct: 51  NGYLINVYEAYDVLGLIKGGIY---------------------NDLSLSVGEALMRRSDD 89

Query: 366 EMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQD 425
                         YT  ++  ++  M   R+  +    VV   +  G   +VG+LT  D
Sbjct: 90  ----------FEGVYTCTKNDKLSTIMDNIRKARVHRFFVV---DDVGR--LVGVLTLSD 134

Query: 426 -LRAF 429
            L+  
Sbjct: 135 ILKYI 139

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	447
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	100.0
1ots_A	465	Voltage-gated CLC-type chloride channel ERIC; CLC	99.96
4ene_A	446	CLC-EC1, H(+)/CL(-) exchange transporter CLCA; mem	99.95
3nd0_A	466	SLL0855 protein; CLC family CL-/H+ antiporter, CLC	99.95
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	99.87
4esy_A	170	CBS domain containing membrane protein; structural	99.81
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	99.78
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	99.77
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	99.76
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	99.76
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	99.76
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	99.75
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	99.75
3oco_A	153	Hemolysin-like protein containing CBS domains; str	99.74
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	99.74
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	99.74
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	99.74
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	99.74
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	99.74
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	99.73
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	99.73
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	99.73
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	99.73
3ocm_A	173	Putative membrane protein; structural genomics, PS	99.73
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	99.72
1pbj_A	125	Hypothetical protein; structural genomics, domain,	99.71
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	99.71
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	99.71
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	99.71
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	99.71
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	99.7
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	99.7
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	99.7
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	99.7
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	99.7
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	99.7
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	99.69
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	99.69
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	99.69
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	99.68
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	99.68
1pvm_A	184	Conserved hypothetical protein TA0289; structural	99.67
4fry_A	157	Putative signal-transduction protein with CBS DOM;	99.66
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	99.66
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	99.64
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	99.63
2oux_A	286	Magnesium transporter; 10001B, structural genomics	99.62
1vr9_A	213	CBS domain protein/ACT domain protein; structural	99.61
3ddj_A	296	CBS domain-containing protein; structural genomics	99.61
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	99.61
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.59
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.56
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.56
3ddj_A	296	CBS domain-containing protein; structural genomics	99.53
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.53
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	99.52
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.52
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.47
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.46
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	99.41
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.4
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.4
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.4
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	99.37
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	99.35
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.29
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	99.29
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.26
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	99.24
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	99.18
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	99.08
1ots_A	465	Voltage-gated CLC-type chloride channel ERIC; CLC	98.86
4ene_A	446	CLC-EC1, H(+)/CL(-) exchange transporter CLCA; mem	98.76
3nd0_A	466	SLL0855 protein; CLC family CL-/H+ antiporter, CLC	98.75
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	98.69
1vr9_A	213	CBS domain protein/ACT domain protein; structural	98.65
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	98.57
4esy_A	170	CBS domain containing membrane protein; structural	98.54
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	98.5
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	98.42
3fio_A	70	A cystathionine beta-synthase domain protein fused	98.41
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	98.35
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	98.34
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	98.33
3fio_A	70	A cystathionine beta-synthase domain protein fused	98.32
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	98.29
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	98.28
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	98.28
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	98.26
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	98.25
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	98.19
1pbj_A	125	Hypothetical protein; structural genomics, domain,	98.18
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	98.18
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	98.15
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	98.15
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	98.13
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	98.13
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	98.13
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	98.12
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	98.12
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	98.11
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	98.11
1pvm_A	184	Conserved hypothetical protein TA0289; structural	98.11
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	98.1
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	98.1
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	98.1
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	98.09
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	98.09
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	98.08
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	98.08
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	98.08
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	98.08
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	98.08
3oco_A	153	Hemolysin-like protein containing CBS domains; str	98.06
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	98.05
3ocm_A	173	Putative membrane protein; structural genomics, PS	98.04
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	98.03
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	98.01
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	98.01
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	97.97
4fry_A	157	Putative signal-transduction protein with CBS DOM;	97.97
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	97.84
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	97.73
2oux_A	286	Magnesium transporter; 10001B, structural genomics	97.72
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	97.59
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	97.53
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	97.41
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	97.14
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	96.87
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	96.85
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	96.74
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	96.73
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	96.69
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	96.09

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=100.00  E-value=2.3e-49  Score=425.92  Aligned_cols=313  Identities=24%  Similarity=0.337  Sum_probs=235.4

Q ss_pred             hHHHHHHHhcCCCC---CCcchHHHHHHHHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHhhccC--CcchHHH
Q 013262          101 NDDAVRNIFSSNTP---TEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYT--NIDQGLY  175 (447)
Q Consensus       101 ~~~~i~~l~~~~~~---~~~~~~~l~~~~~~k~~~~~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~--~~~~~~~  175 (447)
                      +++.++.+|++.+.   +.+.+..|++++++|+++|++|+|+|+|||+|+|+|++||++|+++|.+++...  .++|+.|
T Consensus       297 ~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~k~~~t~~s~g~g~pGGif~P~l~iGA~~G~~~g~~~~~~~p~~~~p~~~  376 (632)
T 3org_A          297 PRATINDLFKAVPLYQTDHFGWTELILMPIIKFILVALSIGLPLPAGVFVPSFLIGAGFGRLYGELMRVVFGNAIVPGSY  376 (632)
T ss_dssp             CHHHHHHHHSCC----------CCSSHHHHHHHHHHHHHTTSSSBCBCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHH
T ss_pred             HHHHHHHHHcCCccccccchhHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHhCCcccchHHH
Confidence            56778888875432   234566788889999999999999999999999999999999999999987632  2689999


Q ss_pred             HHHHHHHHHHhhhchhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhhcCCchHHHHHHhhCCCCCCCCCCcccccccc
Q 013262          176 AVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILELKGLPFLDAHPEPWMRTLTV  255 (447)
Q Consensus       176 a~~G~aa~~~g~~~~p~s~~vi~~E~t~~~~~~~p~~ia~~va~~v~~~l~~sIYd~~l~~kg~p~l~~~~~~~l~~l~v  255 (447)
                      |++||||++||++|+|++++ |++||||++++++|+|+++++|+++++.++++|||.+++.|++|++++......++++|
T Consensus       377 a~vGmaa~~~~v~~ap~t~v-i~~E~tg~~~~~lpl~ia~~~a~~v~~~~~~~iY~~~~~~k~lp~l~~~~~~~~~~~~V  455 (632)
T 3org_A          377 AVVGAAAFTAGVTRALSCAV-IIFEVTGQIRHLVPVLISVLLAVIVGNAFNRSLYETLVLMKHLPYMPILRRDRSPEMTA  455 (632)
T ss_dssp             HHHHHHHHHHHHSCCTTHHH-HHHHHTCCCSCSHHHHHHHHHHHHHHHHHCCCHHHHHHHHTTCCEEEEECTTCCTTSBH
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHhCChhHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCccccccccccccCcH
Confidence            99999999999999999875 89999999999999999999999999999889999999999999987555445578999


Q ss_pred             cccccCCCCeeEecCCCCHHHHHHHHh-cCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccc
Q 013262          256 GELIDAKPPVITLSGIEKVSQIVDVLR-NTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRT  334 (447)
Q Consensus       256 ~diM~~~~~vv~l~~~~tv~~~~~~L~-~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~  334 (447)
                      +|+|+++.++++++++++++|+.+.|+ +++++++||||++           ++++|+|+++|+.+.+.++.... ..+.
T Consensus       456 ~diM~p~~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~~-----------~~lvGiVt~~DL~~~l~~~~~~~-~~~~  523 (632)
T 3org_A          456 REIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDAN-----------GYLLGAISRKEIVDRLQHVLEDV-PEPI  523 (632)
T ss_dssp             HHHCBCTTTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCTT-----------CBBCCEESHHHHTTTTTTC---------
T ss_pred             HHHhhcCCCceEecCCCcHHHHHHHHHhcCCcceEEEEecC-----------CeEEEEEEHHHHHHHHHHHhhhc-cccc
Confidence            999993338999999999999999999 8999999999987           89999999999987654421000 0000


Q ss_pred             hhhhhhhcchHHHHhhhcccc-ccc------ccchhh---hhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEE
Q 013262          335 EEWEVREKFSWVELAEREGKI-EEV------AVTSEE---MEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLL  404 (447)
Q Consensus       335 ~~~~~~~~~~~~d~~~~~~~~-~~~------~l~~~~---~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~Lp  404 (447)
                      ...+........++.+..... ++.      ...+.+   .+...+++++|+++|++|++|+++.++.++|.+++.+++|
T Consensus       524 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt~~pitV~~~~~l~ea~~~M~~~~i~~lp  603 (632)
T 3org_A          524 AGHRTLVLLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDVSPIVVTSYSLVRQLHFLFVMLMPSMIY  603 (632)
T ss_dssp             -----------------------------------------------CCSCCCCCCEEETTCBHHHHHHHHHHTCCSEEE
T ss_pred             ccccceeccCHHHHHhhcccCCCCCcccchhhhcccceEeeccccccchhhcCCCceecCCCcHHHHHHHHHhcCCCEEE
Confidence            000000001111111100000 000      000000   0111137899999999999999999999999999999999


Q ss_pred             EEeCcccCCCCcEEEEEeHHHHHHHHHh
Q 013262          405 VVPKYEAAGVSPVVGILTRQDLRAFNIL  432 (447)
Q Consensus       405 VVd~~~~~g~~~lvGIITr~DLl~~~~~  432 (447)
                      |+ +     +|+++||||++|+++++.+
T Consensus       604 Vv-e-----~G~lvGIVT~~Dll~~~~~  625 (632)
T 3org_A          604 VT-E-----RGKLVGIVEREDVAYGYSN  625 (632)
T ss_dssp             EE-E-----TTEEEEEEEGGGTEECCCC
T ss_pred             EE-E-----CCEEEEEEehhhHHHHHhh
Confidence            99 4     4689999999999876554

>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel, FAB complex, membrane protein; 2.51A {Escherichia coli} SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A 2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ...

Probab=99.96  E-value=5.8e-29  Score=257.65  Aligned_cols=162  Identities=20%  Similarity=0.367  Sum_probs=144.4

Q ss_pred             CCcchHHHHHHHHHHHHHhHcchhhhhcCCCCCCCCCCCCCCCCCCCCcccccCCCCCcchhHHhhcCChHHHHHHHhcC
Q 013262           32 GKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSS  111 (447)
Q Consensus        32 ~~~~~~~e~~~v~~~t~~~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~~~~~~c~~~~y~~l~~l~~~~~~~~i~~l~~~  111 (447)
                      +++++++++++.++++++++++.|..                                        +++|++.|+.+|+.
T Consensus       287 ~~~~~~~~~~i~gl~~g~l~~~~P~~----------------------------------------lG~G~~~i~~~~~~  326 (465)
T 1ots_A          287 NITKWVLMGGAIGGLCGLLGFVAPAT----------------------------------------SGGGFNLIPIATAG  326 (465)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHCGGG----------------------------------------SSCSTTHHHHHHHT
T ss_pred             CchhHHHHHHHHHHHHHHHHHHhHhh----------------------------------------cCChHHHHHHHHcC
Confidence            34567789999999999999886543                                        23456778888874


Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHhhcc---CCcchHHHHHHHHHHHHHhhh
Q 013262          112 NTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSY---TNIDQGLYAVLGAASLMAGSM  188 (447)
Q Consensus       112 ~~~~~~~~~~l~~~~~~k~~~~~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~---~~~~~~~~a~~G~aa~~~g~~  188 (447)
                          ++++..+++++++|+++|++|+|+|+|||+|+|+|++||++|+++|.+++..   ...+|+.||++||+|+++|++
T Consensus       327 ----~~~~~~l~~~~~~K~~~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~~~~p~~~~~~~~~alvGmaa~~a~v~  402 (465)
T 1ots_A          327 ----NFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFPQYHLEAGTFAIAGMGALLAASI  402 (465)
T ss_dssp             ----CSCHHHHHHHHHHHHHHHHHHHHTTCSSBSHHHHHHHHHHHHHHHHHHHHHHCGGGTCCHHHHHHHHHTHHHHHTS
T ss_pred             ----CchHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHHHHHHHHHHHHHHHHHCCcccccHHHHHHHHHHHHHHHHH
Confidence                4678889999999999999999999999999999999999999999998753   247899999999999999999


Q ss_pred             chhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhhc-CCchHHHHHHhh
Q 013262          189 RMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSF-NPSIYEIILELK  237 (447)
Q Consensus       189 ~~p~s~~vi~~E~t~~~~~~~p~~ia~~va~~v~~~l-~~sIYd~~l~~k  237 (447)
                      |+|+|+++|++|+||++++++|+|+++++|+++++.+ +++|||.+++++
T Consensus       403 raPlt~ivlv~Eltg~~~~llpl~ia~~iA~~v~~~~~~~~iY~~~l~~~  452 (465)
T 1ots_A          403 RAPLTGIILVLEMTDNYQLILPMIITGLGATLLAQFTGGKPLYSAILART  452 (465)
T ss_dssp             CCHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence            9999999999999999999999999999999999999 799999999875

>4ene_A CLC-EC1, H(+)/CL(-) exchange transporter CLCA; membrane protein, coupled ION transporter, cell membrane, TR protein; HET: DMU MAL; 2.40A {Escherichia coli k-12} PDB: 1ots_A 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2fed_A 2fec_A 1otu_A 2htl_A 2ht2_A 3ejy_A 1ott_A 2h2s_A 4fg6_A 2ht4_A 4ftp_A 3ejz_A 2ht3_A 2htk_A ...

Probab=99.95  E-value=3e-28  Score=250.89  Aligned_cols=134  Identities=23%  Similarity=0.423  Sum_probs=122.8

Q ss_pred             CChHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHhhccC---CcchHHH
Q 013262           99 TTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYT---NIDQGLY  175 (447)
Q Consensus        99 ~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~k~~~~~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~---~~~~~~~  175 (447)
                      ++|++.++.+++.    ++++..|++++++|+++|++|+|+|+|||+|+|+|++||++|+++|.+++...   ..+|+.|
T Consensus       299 G~G~~~i~~~~~~----~~~~~~L~~~~~~K~~~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~~~~p~~~~~~~~~  374 (446)
T 4ene_A          299 GGGFNLIPIATAG----NFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFPQYHLEAGTF  374 (446)
T ss_dssp             SCCSTHHHHHHTT----CSCHHHHHHHHHHHHHHHHHHHTTTCSSBSHHHHHHHHHHHHHHHHHHHHHHCGGGTCCHHHH
T ss_pred             CCcHHHHHHHHcC----CchHHHHHHHHHHHHHHHHHHHccCCCcchhHHHHHHHHHHHHHHHHHHHHhCCccccCHHHH
Confidence            3456677888863    47788899999999999999999999999999999999999999999987642   4789999


Q ss_pred             HHHHHHHHHHhhhchhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhhc-CCchHHHHHHh
Q 013262          176 AVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSF-NPSIYEIILEL  236 (447)
Q Consensus       176 a~~G~aa~~~g~~~~p~s~~vi~~E~t~~~~~~~p~~ia~~va~~v~~~l-~~sIYd~~l~~  236 (447)
                      |++||||+++|++|+|+|+++|++|+||++++++|+|+++++|+++++.+ +++|||.++++
T Consensus       375 a~vGmaa~~a~~~~aPlt~~vl~~Eltg~~~~~lpl~ia~~ia~~v~~~~~~~~iY~~~l~r  436 (446)
T 4ene_A          375 AIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLAQFTGGKPLYSAILAR  436 (446)
T ss_dssp             HHHHHTHHHHHHTCCHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHHHCChhHHHHHHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999 89999998875

>3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog, transport protein; 3.20A {Synechocystis} PDB: 3q17_A

Probab=99.95  E-value=6.6e-28  Score=249.15  Aligned_cols=135  Identities=22%  Similarity=0.397  Sum_probs=125.1

Q ss_pred             CChHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHhhccC---CcchHHH
Q 013262           99 TTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYT---NIDQGLY  175 (447)
Q Consensus        99 ~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~k~~~~~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~---~~~~~~~  175 (447)
                      ++|++.++.+++.    ++++..|++++++|+++|++|+|+|+|||+|+|+|++||++|+++|.+++...   ..+|+.|
T Consensus       306 G~G~~~i~~~~~~----~~~~~~L~~~~~~K~~~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~~~~p~~~~~~~~~  381 (466)
T 3nd0_A          306 DGGDNAVLWAFNS----QSHFSTLILVFCGRFLLTLICYGSGAIGGIFAPMLGIASIVSVAMARHFHLLFPSQIPEPAVM  381 (466)
T ss_dssp             SSSHHHHHHHTTS----CCCHHHHHHHHHHHHHHHHHHHHTTCBCCSHHHHHHHHHHHHHHHHHHHHHHCTTTCSSTHHH
T ss_pred             CCcHHHHHHHHcC----CccHHHHHHHHHHHHHHHHHHHhCCCCCceehHHHHHHHHHHHHHHHHHHHhCCccccCHHHH
Confidence            4578889999964    46788899999999999999999999999999999999999999999987632   5789999


Q ss_pred             HHHHHHHHHHhhhchhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhhc-CCchHHHHHHhh
Q 013262          176 AVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSF-NPSIYEIILELK  237 (447)
Q Consensus       176 a~~G~aa~~~g~~~~p~s~~vi~~E~t~~~~~~~p~~ia~~va~~v~~~l-~~sIYd~~l~~k  237 (447)
                      |++||||+++|++|+|+|+++|++|+||++++++|+|+++++|+++++.+ +++|||.++++.
T Consensus       382 a~vGmaa~~a~v~~aPlt~ivlv~Eltg~~~~~lpl~ia~~iA~~v~~~~~~~~iY~~~l~r~  444 (466)
T 3nd0_A          382 AIAGMGALVAATVRAPLTAILLTIEMTDNYFVILPLLVTCLVASVVAEALGGKPIYTVLLERT  444 (466)
T ss_dssp             HHHTTSHHHHHHHSCHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHCChHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999 899999999863

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=99.87  E-value=2e-21  Score=185.18  Aligned_cols=174  Identities=21%  Similarity=0.335  Sum_probs=121.2

Q ss_pred             CCCCCCCCcccccccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHH
Q 013262          240 PFLDAHPEPWMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLV  319 (447)
Q Consensus       240 p~l~~~~~~~l~~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~  319 (447)
                      |.|.|... ...+++|+|+|++  +++++.+++++.++.++|.++++++|||||++         ++++++|+|+++||+
T Consensus         1 P~L~~~~~-~~~~~~v~diMt~--~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~---------~~~~LvGiIt~~dl~   68 (250)
T 2d4z_A            1 PELSWSSA-NKYNIQVGDIMVR--DVTSIASTSTYGDLLHVLRQTKLKFFPFVDTP---------DTNTLLGSIDRTEVE   68 (250)
T ss_dssp             --CCCCCC-CCSSCBTTSSSBS--SCCCEETTCBHHHHHHHHHHCCCSEEEEESCT---------TTCBEEEEEEHHHHH
T ss_pred             CCCCCCCc-ccCCCChHHhcCC--CCeEECCCCCHHHHHHHHHhcCCCEEEEEecC---------CCCeEEEEEEHHHHH
Confidence            55666555 5678999999999  99999999999999999999999999999974         237899999999999


Q ss_pred             HHHHhhhhhhhcc-cc---------h-hh------hhhhcchHHH-----------------------------------
Q 013262          320 LALKKKWFLQEKR-RT---------E-EW------EVREKFSWVE-----------------------------------  347 (447)
Q Consensus       320 ~~L~~~~~~~~~~-~~---------~-~~------~~~~~~~~~d-----------------------------------  347 (447)
                      .++........+. ..         . .+      .....+...+                                   
T Consensus        69 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  148 (250)
T 2d4z_A           69 GLLQRRISAYRRQPAAAAEADEEGRNGETGASFTGEAESSFAYIDQEDAEGQQREGLEAVKVQTEDPRPPSPVPAEEPTQ  148 (250)
T ss_dssp             HHHHHHHHTTSSSCCCCCCBCCC---------------------------------------------------------
T ss_pred             HHHHHhhhhhhhhhhhhhcccccccccccccccccCCcceeeeccccccccccccCccccCCcccCCccccccccccccc
Confidence            8876532111000 00         0 00      0000000000                                   


Q ss_pred             ----Hhh------hcccccccccchh--------hhhhccCccc-cccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeC
Q 013262          348 ----LAE------REGKIEEVAVTSE--------EMEMYIDLHP-LTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPK  408 (447)
Q Consensus       348 ----~~~------~~~~~~~~~l~~~--------~~~~~idl~~-im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~  408 (447)
                          +..      ......++++..+        ..+..+|+++ +|+++|++|.+++||.+|+++|+++|++++||+++
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~Vdl~~~~md~sP~tv~~~tsL~~v~~LF~~lglr~l~V~~~  228 (250)
T 2d4z_A          149 TSGIYQKKQKGTGQVASRFEEMLTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTSM  228 (250)
T ss_dssp             ------------------CCSCCBHHHHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEET
T ss_pred             cccccccccccccccCcccccccChhhhhhHHHHhcCceeccccccccCCCeEECCCCcHHHHHHHHHHhCCeEEEEEEC
Confidence                000      0001111222222        2456677775 79999999999999999999999999999999974


Q ss_pred             cccCCCCcEEEEEeHHHHHHHHH
Q 013262          409 YEAAGVSPVVGILTRQDLRAFNI  431 (447)
Q Consensus       409 ~~~~g~~~lvGIITr~DLl~~~~  431 (447)
                            |+++|||||+||++++.
T Consensus       229 ------GrLVGIVTrkDl~kai~  245 (250)
T 2d4z_A          229 ------GKLVGVVALAEIQAAIE  245 (250)
T ss_dssp             ------TEEEEEEEHHHHHHHHH
T ss_pred             ------CEEEEEEEHHHHHHHHH
Confidence                  68999999999999875

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.81  E-value=3.6e-20  Score=165.91  Aligned_cols=149  Identities=19%  Similarity=0.290  Sum_probs=112.8

Q ss_pred             cccccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhh
Q 013262          250 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ  329 (447)
Q Consensus       250 l~~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~  329 (447)
                      +++++|+|+|++  +++++++++++.++++.|.+++++++||+|++           |+++|+||.+|+++.+.......
T Consensus        15 l~~~~V~diM~~--~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~-----------g~lvGiit~~Dll~~~~~~~~~~   81 (170)
T 4esy_A           15 IRQVPIRDILTS--PVVTVREDDTLDAVAKTMLEHQIGCAPVVDQN-----------GHLVGIITESDFLRGSIPFWIYE   81 (170)
T ss_dssp             HHTSBGGGGCCS--CCCCEETTSBHHHHHHHHHHTTCSEEEEECTT-----------SCEEEEEEGGGGGGGTCCTTHHH
T ss_pred             HcCCCHHHhcCC--CCcEECCcCcHHHHHHHHHHcCCeEEEEEcCC-----------ccEEEEEEHHHHHHHHhhccccc
Confidence            567899999999  99999999999999999999999999999987           89999999999976433211100


Q ss_pred             hcccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCc
Q 013262          330 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKY  409 (447)
Q Consensus       330 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~  409 (447)
                      ..     ..........+...           ..+......++++|+++++++++++++.+|+++|.+.+++++||+|+ 
T Consensus        82 ~~-----~~~~~~~~~~~~~~-----------~~~~~~~~~v~~im~~~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd~-  144 (170)
T 4esy_A           82 AS-----EILSRAIPAPEVEH-----------LFETGRKLTASAVMTQPVVTAAPEDSVGSIADQMRRHGIHRIPVVQD-  144 (170)
T ss_dssp             HH-----HHHTTTSCHHHHHH-----------HHHHHTTCBHHHHCBCCSCCBCTTSBHHHHHHHHHHTTCSEEEEEET-
T ss_pred             hh-----hhhhhccchhhHHh-----------hhccccccchhhhcccCcccCCcchhHHHHHHHHHHcCCcEEEEEEC-
Confidence            00     00000000000000           00112345678899999999999999999999999999999999984 


Q ss_pred             ccCCCCcEEEEEeHHHHHHHHHhh
Q 013262          410 EAAGVSPVVGILTRQDLRAFNILT  433 (447)
Q Consensus       410 ~~~g~~~lvGIITr~DLl~~~~~~  433 (447)
                           |+++||||++||++++.++
T Consensus       145 -----g~lvGivt~~Dil~~l~~~  163 (170)
T 4esy_A          145 -----GVPVGIVTRRDLLKLLLLE  163 (170)
T ss_dssp             -----TEEEEEEEHHHHTTTSCCC
T ss_pred             -----CEEEEEEEHHHHHHHHHhc
Confidence                 6799999999999876543

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=99.78  E-value=1.4e-18  Score=153.89  Aligned_cols=132  Identities=14%  Similarity=0.110  Sum_probs=109.4

Q ss_pred             ccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcc
Q 013262          253 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKR  332 (447)
Q Consensus       253 l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~  332 (447)
                      .+++++|.|..+++++++++++.+++++|.+++++++||+|++           ++++|+|+.+|+...+.......   
T Consensus        15 ~~~~~iM~P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~~-----------~~lvGiit~~Di~~~~~~~~~~~---   80 (156)
T 3k6e_A           15 GQEETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDE-----------KQFVGTIGLRDIMAYQMEHDLSQ---   80 (156)
T ss_dssp             TTGGGGEEETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC------------CBEEEEEEHHHHHHHHHHHTCCH---
T ss_pred             ccHHHhCcchhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcCC-----------CcEEEEEEecchhhhhhhccccc---
Confidence            4678999987789999999999999999999999999999886           89999999999987664421110   


Q ss_pred             cchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccC
Q 013262          333 RTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAA  412 (447)
Q Consensus       333 ~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~  412 (447)
                                   .                  .....+++++|.++++++++++++.+|+++|.+.+  .+||||+    
T Consensus        81 -------------~------------------~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~--~lpVVd~----  123 (156)
T 3k6e_A           81 -------------E------------------IMADTDIVHMTKTDVAVVSPDFTITEVLHKLVDES--FLPVVDA----  123 (156)
T ss_dssp             -------------H------------------HHTTSBGGGTCBCSCCCBCTTCCHHHHHHHTTTSS--EEEEECT----
T ss_pred             -------------c------------------cccccCHHHhhcCCceecccccHHHHHHHHHHHcC--CeEEEec----
Confidence                         0                  01224578899999999999999999999998765  5999997    


Q ss_pred             CCCcEEEEEeHHHHHHHHHhhhcC
Q 013262          413 GVSPVVGILTRQDLRAFNILTAFP  436 (447)
Q Consensus       413 g~~~lvGIITr~DLl~~~~~~~~~  436 (447)
                       +|+++|+||++|+++++.+...+
T Consensus       124 -~g~l~GiiT~~Dil~~~~~~~~~  146 (156)
T 3k6e_A          124 -EGIFQGIITRKSILKAVNALLHD  146 (156)
T ss_dssp             -TSBEEEEEEHHHHHHHHHHHSCC
T ss_pred             -CCEEEEEEEHHHHHHHHHHHhcc
Confidence             67899999999999998765443

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=99.77  E-value=2e-18  Score=147.36  Aligned_cols=126  Identities=17%  Similarity=0.241  Sum_probs=103.4

Q ss_pred             cccccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhh
Q 013262          250 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ  329 (447)
Q Consensus       250 l~~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~  329 (447)
                      +++.+|+|+|++..+++++++++++.++++.|.+++++.+||+|++          .++++|+|+.+|+...+....   
T Consensus         3 l~~~~v~~iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~----------~~~~~Givt~~dl~~~~~~~~---   69 (130)
T 3i8n_A            3 AQDVPVTQVMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQ----------KDNIIGFVHRLELFKMQQSGS---   69 (130)
T ss_dssp             ----CCTTTSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESSS----------TTCEEEECCHHHHHHHHHTTT---
T ss_pred             cCcCCHhhCCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCC----------CCcEEEEEEHHHHHHHHhcCC---
Confidence            5678999999964467899999999999999999999999999863          168999999999987654321   


Q ss_pred             hcccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCc
Q 013262          330 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKY  409 (447)
Q Consensus       330 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~  409 (447)
                                                           ...+++++| +++.++++++++.+|+++|.+.+.+++||+|+ 
T Consensus        70 -------------------------------------~~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~-  110 (130)
T 3i8n_A           70 -------------------------------------GQKQLGAVM-RPIQVVLNNTALPKVFDQMMTHRLQLALVVDE-  110 (130)
T ss_dssp             -------------------------------------TTSBHHHHS-EECCEEETTSCHHHHHHHHHHHTCCEEEEECT-
T ss_pred             -------------------------------------CcCCHHHHh-cCCcCcCCCCcHHHHHHHHHHcCCeEEEEEcC-
Confidence                                                 012345567 45789999999999999999999999999987 


Q ss_pred             ccCCCCcEEEEEeHHHHHHHHH
Q 013262          410 EAAGVSPVVGILTRQDLRAFNI  431 (447)
Q Consensus       410 ~~~g~~~lvGIITr~DLl~~~~  431 (447)
                          +|+++|+||++|++++..
T Consensus       111 ----~g~~vGivt~~dil~~l~  128 (130)
T 3i8n_A          111 ----YGTVLGLVTLEDIFEHLV  128 (130)
T ss_dssp             ----TSCEEEEEEHHHHHHHHH
T ss_pred             ----CCCEEEEEEHHHHHHHHc
Confidence                578999999999999865

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=99.76  E-value=9.4e-18  Score=146.33  Aligned_cols=127  Identities=15%  Similarity=0.248  Sum_probs=109.9

Q ss_pred             cccccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhh
Q 013262          250 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ  329 (447)
Q Consensus       250 l~~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~  329 (447)
                      +...+|+|+|++..+++++++++++.++++.|.+++++.+||+|++          .++++|+|+.+|+...+....   
T Consensus        20 l~~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~----------~~~lvGivt~~dl~~~~~~~~---   86 (148)
T 3lv9_A           20 FEEKKIREIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRKN----------KDDILGFVHIRDLYNQKINEN---   86 (148)
T ss_dssp             GGTCBGGGTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESSS----------TTSEEEEEEHHHHHHHHHHHS---
T ss_pred             cCCCCHHHccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCC----------CCcEEEEEEHHHHHHHHhcCC---
Confidence            6678999999875578899999999999999999999999999874          158999999999987553310   


Q ss_pred             hcccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCc
Q 013262          330 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKY  409 (447)
Q Consensus       330 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~  409 (447)
                                                            ..+++++| ++++++++++++.+|+++|.+.+.+++||+|+ 
T Consensus        87 --------------------------------------~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-  126 (148)
T 3lv9_A           87 --------------------------------------KIELEEIL-RDIIYISENLTIDKALERIRKEKLQLAIVVDE-  126 (148)
T ss_dssp             --------------------------------------CCCGGGTC-BCCEEEETTSBHHHHHHHHHHHTCSEEEEECT-
T ss_pred             --------------------------------------CccHHHhc-CCCeEECCCCCHHHHHHHHHhcCCeEEEEEeC-
Confidence                                                  13467788 88999999999999999999999999999997 


Q ss_pred             ccCCCCcEEEEEeHHHHHHHHHhh
Q 013262          410 EAAGVSPVVGILTRQDLRAFNILT  433 (447)
Q Consensus       410 ~~~g~~~lvGIITr~DLl~~~~~~  433 (447)
                          +|+++|+||++|+++++..+
T Consensus       127 ----~g~~~Giit~~dil~~l~~~  146 (148)
T 3lv9_A          127 ----YGGTSGVVTIEDILEEIVGE  146 (148)
T ss_dssp             ----TSSEEEEEEHHHHHHHHHHT
T ss_pred             ----CCCEEEEEEHHHHHHHHhCc
Confidence                57899999999999987654

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=99.76  E-value=2e-18  Score=147.61  Aligned_cols=128  Identities=14%  Similarity=0.174  Sum_probs=104.4

Q ss_pred             cccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhc
Q 013262          252 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEK  331 (447)
Q Consensus       252 ~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~  331 (447)
                      +++|+|+|++..+++++++++++.++++.|.+++++++||++++          +++++|+|+.+|+++++.....    
T Consensus         1 ~~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~----------~~~lvGivt~~dl~~~~~~~~~----   66 (130)
T 3hf7_A            1 KVSVNDIMVPRNEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDS----------LDDAISMLRVREAYRLMTEKKE----   66 (130)
T ss_dssp             CCBHHHHSEEGGGCCEEETTSCHHHHHHHHHTCSSSEEEEESSS----------GGGEEEEEEHHHHHHHHTSSSC----
T ss_pred             CcCHHHhCccHHHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCC----------CCcEEEEEEHHHHHHHHhccCc----
Confidence            36899999753368899999999999999999999999999752          1799999999999876543110    


Q ss_pred             ccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCccc
Q 013262          332 RRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEA  411 (447)
Q Consensus       332 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~  411 (447)
                                 .                       ....++++| ++++++++++++.+++++|.+.+.+++||+|+   
T Consensus        67 -----------~-----------------------~~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~---  108 (130)
T 3hf7_A           67 -----------F-----------------------TKEIMLRAA-DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDE---  108 (130)
T ss_dssp             -----------C-----------------------CHHHHHHHS-BCCCEEETTCBHHHHHHHHHHHCCCEEEEECT---
T ss_pred             -----------c-----------------------chhhHHHhc-cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEcC---
Confidence                       0                       001234456 67889999999999999999999999999987   


Q ss_pred             CCCCcEEEEEeHHHHHHHHHhh
Q 013262          412 AGVSPVVGILTRQDLRAFNILT  433 (447)
Q Consensus       412 ~g~~~lvGIITr~DLl~~~~~~  433 (447)
                        +|+++|+||++|++++...+
T Consensus       109 --~g~lvGiit~~Dil~~l~g~  128 (130)
T 3hf7_A          109 --YGDIQGLVTVEDILEEIVGD  128 (130)
T ss_dssp             --TSCEEEEEEHHHHHHHHHC-
T ss_pred             --CCCEEEEeeHHHHHHHHhCC
Confidence              57899999999999987643

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=99.76  E-value=5.2e-18  Score=142.54  Aligned_cols=120  Identities=21%  Similarity=0.273  Sum_probs=105.9

Q ss_pred             ccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcc
Q 013262          253 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKR  332 (447)
Q Consensus       253 l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~  332 (447)
                      .+|+|+|.+  ++.++++++++.++++.|.+++++.+||+|++           ++++|+|+.+|+...+...       
T Consensus         1 ~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-----------~~~~G~vt~~dl~~~~~~~-------   60 (122)
T 3kpb_A            1 TLVKDILSK--PPITAHSNISIMEAAKILIKHNINHLPIVDEH-----------GKLVGIITSWDIAKALAQN-------   60 (122)
T ss_dssp             CBHHHHCCS--CCCCEETTSBHHHHHHHHHHHTCSCEEEECTT-----------SBEEEEECHHHHHHHHHTT-------
T ss_pred             CchHHhhCC--CCEEeCCCCcHHHHHHHHHHcCCCeEEEECCC-----------CCEEEEEEHHHHHHHHHhc-------
Confidence            368999999  89999999999999999999999999999976           8999999999998755331       


Q ss_pred             cchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccC
Q 013262          333 RTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAA  412 (447)
Q Consensus       333 ~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~  412 (447)
                                                         ..+++++|.+++.++++++++.+++++|.+.+.+++||+|+    
T Consensus        61 -----------------------------------~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~----  101 (122)
T 3kpb_A           61 -----------------------------------KKTIEEIMTRNVITAHEDEPVDHVAIKMSKYNISGVPVVDD----  101 (122)
T ss_dssp             -----------------------------------CCBGGGTSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECT----
T ss_pred             -----------------------------------ccCHHHHhcCCCeEECCCCCHHHHHHHHHHhCCCeEEEECC----
Confidence                                               01466788889999999999999999999999999999987    


Q ss_pred             CCCcEEEEEeHHHHHHHHHh
Q 013262          413 GVSPVVGILTRQDLRAFNIL  432 (447)
Q Consensus       413 g~~~lvGIITr~DLl~~~~~  432 (447)
                       +|+++|+||++|+++++.+
T Consensus       102 -~g~~~Givt~~dl~~~l~~  120 (122)
T 3kpb_A          102 -YRRVVGIVTSEDISRLFGG  120 (122)
T ss_dssp             -TCBEEEEEEHHHHHHHHC-
T ss_pred             -CCCEEEEEeHHHHHHHhhc
Confidence             5789999999999998765

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=99.75  E-value=1.4e-17  Score=142.13  Aligned_cols=126  Identities=23%  Similarity=0.302  Sum_probs=109.4

Q ss_pred             ccccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhh
Q 013262          251 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQE  330 (447)
Q Consensus       251 ~~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~  330 (447)
                      ++.+|+|+|.+  ++.++++++++.++++.|.+++++.+||+| +           ++++|+|+.+|+...+....    
T Consensus         2 ~~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~-----------~~~~Givt~~dl~~~~~~~~----   63 (133)
T 2ef7_A            2 EEEIVKEYMKT--QVISVTKDAKLNDIAKVMTEKNIGSVIVVD-G-----------NKPVGIITERDIVKAIGKGK----   63 (133)
T ss_dssp             CCCBGGGTSBC--SCCEEETTCBHHHHHHHHHHHTCSEEEEEE-T-----------TEEEEEEEHHHHHHHHHTTC----
T ss_pred             CcccHHHhccC--CCEEECCCCcHHHHHHHHHhcCCCEEEEEE-C-----------CEEEEEEcHHHHHHHHhcCC----
Confidence            56899999998  889999999999999999999999999999 6           89999999999987654311    


Q ss_pred             cccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcc
Q 013262          331 KRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYE  410 (447)
Q Consensus       331 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~  410 (447)
                                                         .....++++|++++.++++++++.++++.|.+.+.+++||+|+  
T Consensus        64 -----------------------------------~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~--  106 (133)
T 2ef7_A           64 -----------------------------------SLETKAEEFMTASLITIREDSPITGALALMRQFNIRHLPVVDD--  106 (133)
T ss_dssp             -----------------------------------CTTCBGGGTSEECCCCEETTSBHHHHHHHHHHHTCSEEEEECT--
T ss_pred             -----------------------------------CcccCHHHHcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEECC--
Confidence                                               0113467788889999999999999999999999999999987  


Q ss_pred             cCCCCcEEEEEeHHHHHHHHHhhh
Q 013262          411 AAGVSPVVGILTRQDLRAFNILTA  434 (447)
Q Consensus       411 ~~g~~~lvGIITr~DLl~~~~~~~  434 (447)
                         +|+++|+||++|+++++.+..
T Consensus       107 ---~g~~~Giit~~dll~~~~~~~  127 (133)
T 2ef7_A          107 ---KGNLKGIISIRDITRAIDDMF  127 (133)
T ss_dssp             ---TSCEEEEEEHHHHHHHHHHHC
T ss_pred             ---CCeEEEEEEHHHHHHHHHHHH
Confidence               568999999999999887653

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=99.75  E-value=1.1e-17  Score=150.00  Aligned_cols=130  Identities=19%  Similarity=0.246  Sum_probs=107.9

Q ss_pred             cccccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhh
Q 013262          250 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ  329 (447)
Q Consensus       250 l~~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~  329 (447)
                      +...+|+|+|++..+++++++++++.++++.|.+++++.+||+|++          .++++|+|+.+|++..+...    
T Consensus        39 l~~~~v~diM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~----------~~~lvGivt~~dl~~~~~~~----  104 (172)
T 3lhh_A           39 LDERTISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNN----------VDDMVGIISAKQLLSESIAG----  104 (172)
T ss_dssp             ----CTTTTSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESSS----------TTSEEEEEEHHHHHHHHHTT----
T ss_pred             cCCCCHHHhCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeCC----------CCeEEEEEEHHHHHHHHhhc----
Confidence            5678999999942278999999999999999999999999999863          16899999999998755321    


Q ss_pred             hcccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCc
Q 013262          330 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKY  409 (447)
Q Consensus       330 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~  409 (447)
                                                           ...+++++| ++++++++++++.+|+++|.+.+.+++||+|+ 
T Consensus       105 -------------------------------------~~~~v~~im-~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~-  145 (172)
T 3lhh_A          105 -------------------------------------ERLELVDLV-KNCNFVPNSLSGMELLEHFRTTGSQMVFVVDE-  145 (172)
T ss_dssp             -------------------------------------CCCCGGGGC-BCCEEEETTCCHHHHHHHHHHHTCSEEEEECT-
T ss_pred             -------------------------------------CcccHHHHh-cCCeEeCCCCCHHHHHHHHHHcCCeEEEEEeC-
Confidence                                                 013577789 89999999999999999999999999999997 


Q ss_pred             ccCCCCcEEEEEeHHHHHHHHHhhhcC
Q 013262          410 EAAGVSPVVGILTRQDLRAFNILTAFP  436 (447)
Q Consensus       410 ~~~g~~~lvGIITr~DLl~~~~~~~~~  436 (447)
                          +|+++|+||++|+++++..+...
T Consensus       146 ----~g~lvGiit~~Dil~~l~~~~~d  168 (172)
T 3lhh_A          146 ----YGDLKGLVTLQDMMDALTGEFFQ  168 (172)
T ss_dssp             ----TSCEEEEEEHHHHHHHHHTTCC-
T ss_pred             ----CCCEEEEeeHHHHHHHHhCCCcc
Confidence                57899999999999998865543

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=99.74  E-value=6.7e-18  Score=148.32  Aligned_cols=131  Identities=14%  Similarity=0.154  Sum_probs=108.3

Q ss_pred             cccccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEe-cCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhh
Q 013262          250 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVL-DEGVVPPSGLANVATELHGLILRAHLVLALKKKWFL  328 (447)
Q Consensus       250 l~~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVV-d~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~  328 (447)
                      +...+|+++|++..+++++++++++.++++.|.+++++.+||+ +++          +++++|+|+.+||...+....  
T Consensus        17 l~~~~v~~iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~----------~~~lvGivt~~dl~~~~~~~~--   84 (153)
T 3oco_A           17 MNDKVASDVMVDRTSMSVVDVDETIADALLLYLEEQYSRFPVTADND----------KDKIIGYAYNYDIVRQARIDD--   84 (153)
T ss_dssp             HHHCBHHHHSEEGGGCCCEETTSBHHHHHHHHHHHCCSEEEEEETTE----------EEEEEEEEEHHHHHHHHHHHT--
T ss_pred             cCCCEeeeEecchhheEEEcCCCCHHHHHHHHHhCCCCEEEEEECCC----------CCcEEEEEEHHHHHhHHhcCC--
Confidence            4568999999853368899999999999999999999999999 542          179999999999987654310  


Q ss_pred             hhcccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeC
Q 013262          329 QEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPK  408 (447)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~  408 (447)
                                                             ..+++++| ++++++.+++++.+|+++|.+.+.+++||+|+
T Consensus        85 ---------------------------------------~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~  124 (153)
T 3oco_A           85 ---------------------------------------KAKISTIM-RDIVSVPENMKVPDVMEEMSAHRVPMAIVIDE  124 (153)
T ss_dssp             ---------------------------------------TSBGGGTC-BCCEEEETTSBHHHHHHHHHHTTCSCEEEECT
T ss_pred             ---------------------------------------CCcHHHHh-CCCeEECCCCCHHHHHHHHHHcCCcEEEEEeC
Confidence                                                   13467788 89999999999999999999999999999997


Q ss_pred             cccCCCCcEEEEEeHHHHHHHHHhhhcCc
Q 013262          409 YEAAGVSPVVGILTRQDLRAFNILTAFPH  437 (447)
Q Consensus       409 ~~~~g~~~lvGIITr~DLl~~~~~~~~~~  437 (447)
                           +|+++|+||++|+++++..+...+
T Consensus       125 -----~g~~vGivt~~dil~~l~~~~~de  148 (153)
T 3oco_A          125 -----YGGTSGIITDKDVYEELFGNLRDE  148 (153)
T ss_dssp             -----TSCEEEEECHHHHHHHHHC-----
T ss_pred             -----CCCEEEEeeHHHHHHHHhccCCCc
Confidence                 578999999999999988765544

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=99.74  E-value=6.3e-18  Score=144.16  Aligned_cols=125  Identities=17%  Similarity=0.268  Sum_probs=103.7

Q ss_pred             ccccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhh
Q 013262          251 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQE  330 (447)
Q Consensus       251 ~~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~  330 (447)
                      .+++|+|+|++..+++++++++++.++++.|.+++++.+||+|++          .++++|+|+.+|+++.+..      
T Consensus         3 ~~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~----------~~~~~Givt~~dl~~~~~~------   66 (129)
T 3jtf_A            3 AERTVADIMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYEDD----------RDNIIGILLAKDLLRYMLE------   66 (129)
T ss_dssp             -CCBHHHHCEEGGGCCCEETTSCHHHHHHHHHHSCCSEEEEESSS----------TTCEEEEEEGGGGGGGGTC------
T ss_pred             CCCCHHHhCccHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEcCC----------CCcEEEEEEHHHHHhHhcc------
Confidence            467899999943278899999999999999999999999999873          1789999999998653211      


Q ss_pred             cccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcc
Q 013262          331 KRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYE  410 (447)
Q Consensus       331 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~  410 (447)
                                                          ...+++++|. +++++.+++++.+++++|.+.+.+++||+|+  
T Consensus        67 ------------------------------------~~~~v~~~m~-~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~--  107 (129)
T 3jtf_A           67 ------------------------------------PALDIRSLVR-PAVFIPEVKRLNVLLREFRASRNHLAIVIDE--  107 (129)
T ss_dssp             ------------------------------------TTSCGGGGCB-CCCEEETTCBHHHHHHHHHTSSCCEEEEECC--
T ss_pred             ------------------------------------CCcCHHHHhC-CCeEeCCCCcHHHHHHHHHhcCCeEEEEEeC--
Confidence                                                0124566775 4889999999999999999999999999997  


Q ss_pred             cCCCCcEEEEEeHHHHHHHHHhh
Q 013262          411 AAGVSPVVGILTRQDLRAFNILT  433 (447)
Q Consensus       411 ~~g~~~lvGIITr~DLl~~~~~~  433 (447)
                         +|+++|+||++|+++++..+
T Consensus       108 ---~g~~~Giit~~Dil~~l~ge  127 (129)
T 3jtf_A          108 ---HGGISGLVTMEDVLEQIVGD  127 (129)
T ss_dssp             ----CCEEEEEEHHHHHHHHHHT
T ss_pred             ---CCCEEEEEEHHHHHHHHhCC
Confidence               57899999999999987654

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=99.74  E-value=3.7e-18  Score=147.08  Aligned_cols=130  Identities=18%  Similarity=0.243  Sum_probs=103.7

Q ss_pred             cccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhc
Q 013262          252 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEK  331 (447)
Q Consensus       252 ~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~  331 (447)
                      +++|+|+|++..+++++++++++.++++.|.+++++.+||++++          .++++|+|+.+||++.+.+..     
T Consensus         2 ~~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~----------~~~~vGivt~~dl~~~~~~~~-----   66 (136)
T 3lfr_A            2 DLQVRDIMVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIGES----------HDDVLGVLLAKDLLPLILKAD-----   66 (136)
T ss_dssp             -CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSS----------TTCEEEEEEGGGGGGGGGSSS-----
T ss_pred             CCChHhccccHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcCC----------CCcEEEEEEHHHHHHHHHhcc-----
Confidence            57899999943278999999999999999999999999999874          158999999999976432100     


Q ss_pred             ccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCccc
Q 013262          332 RRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEA  411 (447)
Q Consensus       332 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~  411 (447)
                                                        ....+++++|.+ ++++.+++++.+|+++|.+.+.+++||+|+   
T Consensus        67 ----------------------------------~~~~~v~~~m~~-~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~---  108 (136)
T 3lfr_A           67 ----------------------------------GDSDDVKKLLRP-ATFVPESKRLNVLLREFRANHNHMAIVIDE---  108 (136)
T ss_dssp             ----------------------------------GGGCCGGGTCBC-CCEEETTCBHHHHHHHHHHHTCCEEEEECT---
T ss_pred             ----------------------------------CCCcCHHHHcCC-CeEECCCCcHHHHHHHHHhcCCeEEEEEeC---
Confidence                                              012356778865 899999999999999999999999999987   


Q ss_pred             CCCCcEEEEEeHHHHHHHHHhhhcC
Q 013262          412 AGVSPVVGILTRQDLRAFNILTAFP  436 (447)
Q Consensus       412 ~g~~~lvGIITr~DLl~~~~~~~~~  436 (447)
                        +|+++|+||++|+++++..+..+
T Consensus       109 --~g~lvGiit~~Dil~~l~~~~~d  131 (136)
T 3lfr_A          109 --YGGVAGLVTIEDVLEQIVGDIED  131 (136)
T ss_dssp             --TSCEEEEEEHHHHHTTC------
T ss_pred             --CCCEEEEEEHHHHHHHHhCCCcC
Confidence              57899999999999887765443

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=99.74  E-value=2.5e-17  Score=141.58  Aligned_cols=130  Identities=9%  Similarity=0.159  Sum_probs=110.4

Q ss_pred             cccccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHH-HHHhhhhh
Q 013262          250 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL-ALKKKWFL  328 (447)
Q Consensus       250 l~~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~-~L~~~~~~  328 (447)
                      +...+|+|+|.+  +++++++++++.++.+.|.+++++.+||+|++           ++++|+|+.+|+.+ ++.+..  
T Consensus         4 l~~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-----------~~~~Givt~~dl~~~~~~~~~--   68 (138)
T 2yzi_A            4 DMKAPIKVYMTK--KLLGVKPSTSVQEASRLMMEFDVGSLVVINDD-----------GNVVGFFTKSDIIRRVIVPGL--   68 (138)
T ss_dssp             CTTSBGGGTCBC--CCCEECTTSBHHHHHHHHHHHTCSEEEEECTT-----------SCEEEEEEHHHHHHHTTTTCC--
T ss_pred             hhhhhHHHHhcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC-----------CcEEEEEeHHHHHHHHHhcCC--
Confidence            567899999998  89999999999999999999999999999976           89999999999963 221100  


Q ss_pred             hhcccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeC
Q 013262          329 QEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPK  408 (447)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~  408 (447)
                                                           .....++++|++++.++++++++.+++++|.+.+.+++ |+|+
T Consensus        69 -------------------------------------~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~  110 (138)
T 2yzi_A           69 -------------------------------------PYDIPVERIMTRNLITANVNTPLGEVLRKMAEHRIKHI-LIEE  110 (138)
T ss_dssp             -------------------------------------CTTSBGGGTCBCSCCEEETTSBHHHHHHHHHHHTCSEE-EEEE
T ss_pred             -------------------------------------cccCCHHHHhhCCCeEECCCCcHHHHHHHHHhcCCCEE-EECC
Confidence                                                 01234677898999999999999999999999999999 9997


Q ss_pred             cccCCCCcEEEEEeHHHHHHHHHhhhcCc
Q 013262          409 YEAAGVSPVVGILTRQDLRAFNILTAFPH  437 (447)
Q Consensus       409 ~~~~g~~~lvGIITr~DLl~~~~~~~~~~  437 (447)
                           +|+++|+||++|+++++.++....
T Consensus       111 -----~g~~~Giit~~dil~~~~~~~~~~  134 (138)
T 2yzi_A          111 -----EGKIVGIFTLSDLLEASRRRLETA  134 (138)
T ss_dssp             -----TTEEEEEEEHHHHHHHHHCCSCCC
T ss_pred             -----CCCEEEEEEHHHHHHHHHHHHHhh
Confidence                 568999999999999988665443

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=99.74  E-value=7.4e-18  Score=143.31  Aligned_cols=125  Identities=12%  Similarity=0.053  Sum_probs=107.7

Q ss_pred             ccccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhh
Q 013262          251 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQE  330 (447)
Q Consensus       251 ~~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~  330 (447)
                      .+++++++|.+  ++.++++++++.++.+.|.+++++.+||+|+            ++++|+|+.+|+.+.+....    
T Consensus         3 ~s~~v~~~m~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~------------~~~~Givt~~dl~~~~~~~~----   64 (128)
T 3gby_A            3 ASVTFSYLAET--DYPVFTLGGSTADAARRLAASGCACAPVLDG------------ERYLGMVHLSRLLEGRKGWP----   64 (128)
T ss_dssp             TTCBGGGGCBC--CSCCEETTSBHHHHHHHHHHHTCSEEEEEET------------TEEEEEEEHHHHHTTCSSSC----
T ss_pred             cceEHHHhhcC--CcceECCCCCHHHHHHHHHHCCCcEEEEEEC------------CEEEEEEEHHHHHHHHhhCC----
Confidence            36899999999  8999999999999999999999999999986            69999999999975332110    


Q ss_pred             cccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcc
Q 013262          331 KRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYE  410 (447)
Q Consensus       331 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~  410 (447)
                                                         ....+++++|.+++.++.+++++.+++++|.+.+.+++||+|+  
T Consensus        65 -----------------------------------~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~--  107 (128)
T 3gby_A           65 -----------------------------------TVKEKLGEELLETVRSYRPGEQLFDNLISVAAAKCSVVPLADE--  107 (128)
T ss_dssp             -----------------------------------CTTCBCCGGGCBCCCCBCTTSBGGGSHHHHHHCSSSEEEEECT--
T ss_pred             -----------------------------------cccCcHHHHccCCCcEECCCCCHHHHHHHHHhCCCcEEEEECC--
Confidence                                               0113477889899999999999999999999999999999987  


Q ss_pred             cCCCCcEEEEEeHHHHHHHHHhh
Q 013262          411 AAGVSPVVGILTRQDLRAFNILT  433 (447)
Q Consensus       411 ~~g~~~lvGIITr~DLl~~~~~~  433 (447)
                         +|+++|+||++|+++++.+.
T Consensus       108 ---~g~~~Giit~~dll~~l~~~  127 (128)
T 3gby_A          108 ---DGRYEGVVSRKRILGFLAER  127 (128)
T ss_dssp             ---TCBEEEEEEHHHHHHHHHTT
T ss_pred             ---CCCEEEEEEHHHHHHHHHhh
Confidence               57899999999999987653

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=99.74  E-value=3.3e-18  Score=145.44  Aligned_cols=124  Identities=20%  Similarity=0.368  Sum_probs=101.5

Q ss_pred             cccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhc
Q 013262          252 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEK  331 (447)
Q Consensus       252 ~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~  331 (447)
                      +++|+|+|.+..+++++++++++.++++.|.+++++.+||+|++          .++++|+|+.+|+.+.+....     
T Consensus         2 ~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~----------~~~~vGivt~~dl~~~~~~~~-----   66 (127)
T 3nqr_A            2 DQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISED----------KDHIEGILMAKDLLPFMRSDA-----   66 (127)
T ss_dssp             -CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSS----------TTCEEEEEEGGGGGGGGSTTC-----
T ss_pred             CcCHHHhcccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcCC----------CCcEEEEEEHHHHHHHHhccC-----
Confidence            57899999962148999999999999999999999999999874          168999999999965432110     


Q ss_pred             ccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCccc
Q 013262          332 RRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEA  411 (447)
Q Consensus       332 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~  411 (447)
                                                         ...+++++|. ++.++++++++.+++++|.+.+.+++||+|+   
T Consensus        67 -----------------------------------~~~~v~~~m~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---  107 (127)
T 3nqr_A           67 -----------------------------------EAFSMDKVLR-TAVVVPESKRVDRMLKEFRSQRYHMAIVIDE---  107 (127)
T ss_dssp             -----------------------------------CCCCHHHHCB-CCCEEETTCBHHHHHHHHHHTTCCEEEEECT---
T ss_pred             -----------------------------------CCCCHHHHcC-CCeEECCCCcHHHHHHHHHhcCCeEEEEEeC---
Confidence                                               1123556674 4789999999999999999999999999997   


Q ss_pred             CCCCcEEEEEeHHHHHHHHH
Q 013262          412 AGVSPVVGILTRQDLRAFNI  431 (447)
Q Consensus       412 ~g~~~lvGIITr~DLl~~~~  431 (447)
                        +|+++|+||++|+++++.
T Consensus       108 --~g~~~Giit~~dll~~l~  125 (127)
T 3nqr_A          108 --FGGVSGLVTIEDILELIV  125 (127)
T ss_dssp             --TSCEEEEEEHHHHHHHC-
T ss_pred             --CCCEEEEEEHHHHHHHHh
Confidence              578999999999998754

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=99.73  E-value=2.9e-17  Score=146.08  Aligned_cols=137  Identities=15%  Similarity=0.109  Sum_probs=113.4

Q ss_pred             CCcccccccccccccCC-CCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHh
Q 013262          246 PEPWMRTLTVGELIDAK-PPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK  324 (447)
Q Consensus       246 ~~~~l~~l~v~diM~~~-~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~  324 (447)
                      ....+..++|+|+|.++ .+++++++++++.++++.|.+++++.+||+|++           ++++|+|+.+|+.+.+..
T Consensus        17 ~~~~l~~~~v~dim~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~-----------~~~~Givt~~dl~~~~~~   85 (165)
T 3fhm_A           17 LYFQGMATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDAD-----------GVVLGIFTERDLVKAVAG   85 (165)
T ss_dssp             CCCSSSSCBHHHHHHHHCSCCCEECTTSBHHHHHHHHHHHTCSEEEEECTT-----------SCEEEEEEHHHHHHHHHH
T ss_pred             hhHhhhhcCHHHHhccCCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCC-----------CeEEEEEEHHHHHHHHHh
Confidence            44457789999999951 268899999999999999999999999999986           899999999999876643


Q ss_pred             hhhhhhcccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEE
Q 013262          325 KWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLL  404 (447)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~Lp  404 (447)
                      ...                                     .....+++++|.++++++.+++++.+++++|.+.+.+++|
T Consensus        86 ~~~-------------------------------------~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lp  128 (165)
T 3fhm_A           86 QGA-------------------------------------ASLQQSVSVAMTKNVVRCQHNSTTDQLMEIMTGGRFRHVP  128 (165)
T ss_dssp             HGG-------------------------------------GGGTSBGGGTSBSSCCCBCTTCBHHHHHHHHHHHTCSEEE
T ss_pred             cCC-------------------------------------ccccCCHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEE
Confidence            210                                     0012357788889999999999999999999999999999


Q ss_pred             EEeCcccCCCCcEEEEEeHHHHHHHHHhhhcC
Q 013262          405 VVPKYEAAGVSPVVGILTRQDLRAFNILTAFP  436 (447)
Q Consensus       405 VVd~~~~~g~~~lvGIITr~DLl~~~~~~~~~  436 (447)
                      |+|+      |+++|+||++|+++++.++...
T Consensus       129 Vvd~------g~~~Giit~~dil~~~~~~~~~  154 (165)
T 3fhm_A          129 VEEN------GRLAGIISIGDVVKARIGEIEA  154 (165)
T ss_dssp             EEET------TEEEEEEEHHHHHHHTTCC---
T ss_pred             EEEC------CEEEEEEEHHHHHHHHHHHHHH
Confidence            9984      6799999999999988765443

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=99.73  E-value=3.2e-17  Score=144.91  Aligned_cols=132  Identities=14%  Similarity=0.129  Sum_probs=111.1

Q ss_pred             ccccccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhh
Q 013262          249 WMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFL  328 (447)
Q Consensus       249 ~l~~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~  328 (447)
                      .+..++|+|+|.+  ++ ++++++++.++++.|.+++++.+||+|++           ++++|+|+.+|+...+..... 
T Consensus        13 ~l~~~~v~~im~~--~~-~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~-----------~~~~Givt~~dl~~~~~~~~~-   77 (159)
T 3fv6_A           13 KLKKLQVKDFQSI--PV-VIHENVSVYDAICTMFLEDVGTLFVVDRD-----------AVLVGVLSRKDLLRASIGQQE-   77 (159)
T ss_dssp             HHTTCBGGGSCBC--CC-EEETTSBHHHHHHHHHHHTCSEEEEECTT-----------SCEEEEEEHHHHHHHHTSCSC-
T ss_pred             HHhhCCHHHHcCC--CE-EECCCCcHHHHHHHHHHCCCCEEEEEcCC-----------CcEEEEEeHHHHHHHhhccCc-
Confidence            3667899999987  65 89999999999999999999999999976           899999999999875522100 


Q ss_pred             hhcccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccC--CCceecCCCCHHHHHHHHHHcCCCEEEEE
Q 013262          329 QEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNT--TPYTVIESMSVAKAMVLFRQVGLRHLLVV  406 (447)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~--~p~tV~~~~sL~~a~~lf~~~gl~~LpVV  406 (447)
                                                           ....+++++|.+  +++++.+++++.+|+++|.+.+.+++||+
T Consensus        78 -------------------------------------~~~~~v~~~m~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv  120 (159)
T 3fv6_A           78 -------------------------------------LTSVPVHIIMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVI  120 (159)
T ss_dssp             -------------------------------------TTTCBGGGTSEETTSCCCBCTTSBHHHHHHHHHHHTCSEEEEE
T ss_pred             -------------------------------------ccCcCHHHHHcCCCCcEEECCCCCHHHHHHHHHHcCCcEEEEE
Confidence                                                 012346778887  88999999999999999999999999999


Q ss_pred             eCcccCCCC---cEEEEEeHHHHHHHHHhhhcCc
Q 013262          407 PKYEAAGVS---PVVGILTRQDLRAFNILTAFPH  437 (447)
Q Consensus       407 d~~~~~g~~---~lvGIITr~DLl~~~~~~~~~~  437 (447)
                      |+     +|   +++|+||++|+++++.+-....
T Consensus       121 d~-----~g~~~~~vGiit~~dil~~l~~~~~~~  149 (159)
T 3fv6_A          121 KD-----TDKGFEVIGRVTKTNMTKILVSLSENE  149 (159)
T ss_dssp             EE-----CSSSEEEEEEEEHHHHHHHHHHHHTTC
T ss_pred             eC-----CCcceeEEEEEEHHHHHHHHHHHhhcc
Confidence            97     45   8999999999999988755443

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=99.73  E-value=3.6e-17  Score=141.34  Aligned_cols=123  Identities=17%  Similarity=0.258  Sum_probs=106.1

Q ss_pred             cccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCc--eEEEEEeHHHHHHHHHhhhhhh
Q 013262          252 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVAT--ELHGLILRAHLVLALKKKWFLQ  329 (447)
Q Consensus       252 ~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~--~lvGiIt~~dL~~~L~~~~~~~  329 (447)
                      .++|+|+|.+  +++++++++++.++++.|.+++++.+||+|++           +  +++|+|+++|+.+.+.+..   
T Consensus         4 ~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-----------~~~~~~Givt~~dl~~~~~~~~---   67 (141)
T 2rih_A            4 AIRTSELLKR--PPVSLPETATIREVATELAKNRVGLAVLTARD-----------NPKRPVAVVSERDILRAVAQRL---   67 (141)
T ss_dssp             -CBGGGGCCS--CCEEEETTCBHHHHHHHHHHHTCSEEEEEETT-----------EEEEEEEEEEHHHHHHHHHTTC---
T ss_pred             ceEHHHHhcC--CCeEeCCCCcHHHHHHHHHHcCCCEEEEEcCC-----------CcceeEEEEEHHHHHHHHhcCC---
Confidence            4689999998  89999999999999999999999999999986           7  9999999999987654310   


Q ss_pred             hcccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCc
Q 013262          330 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKY  409 (447)
Q Consensus       330 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~  409 (447)
                                                          ....+++++|.+++.+++++ ++.+|+++|.+.+.+++||+|+ 
T Consensus        68 ------------------------------------~~~~~v~~~m~~~~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~-  109 (141)
T 2rih_A           68 ------------------------------------DLDGPAMPIANSPITVLDTD-PVHVAAEKMRRHNIRHVVVVNK-  109 (141)
T ss_dssp             ------------------------------------CTTSBSGGGCBCCCEEETTS-BHHHHHHHHHHHTCSEEEEECT-
T ss_pred             ------------------------------------CCCCCHHHHcCCCCeEEcCC-CHHHHHHHHHHcCCeEEEEEcC-
Confidence                                                01135777888999999999 9999999999999999999997 


Q ss_pred             ccCCCCcEEEEEeHHHHHHHHHh
Q 013262          410 EAAGVSPVVGILTRQDLRAFNIL  432 (447)
Q Consensus       410 ~~~g~~~lvGIITr~DLl~~~~~  432 (447)
                          +|+++|+||++|++++...
T Consensus       110 ----~g~~~Giit~~dll~~~~~  128 (141)
T 2rih_A          110 ----NGELVGVLSIRDLCFERAI  128 (141)
T ss_dssp             ----TSCEEEEEEHHHHHSCHHH
T ss_pred             ----CCcEEEEEEHHHHHHHHHH
Confidence                5789999999999876543

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=99.73  E-value=1.7e-17  Score=142.41  Aligned_cols=128  Identities=19%  Similarity=0.303  Sum_probs=107.7

Q ss_pred             ccccccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHH-HHHHHhhhh
Q 013262          249 WMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHL-VLALKKKWF  327 (447)
Q Consensus       249 ~l~~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL-~~~L~~~~~  327 (447)
                      .+.+.+++++|.+  ++.++++++++.++.+.|.+++++.+||+|++           ++++|+|+++|+ ...+.... 
T Consensus         4 ~l~~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-----------~~~~Givt~~dl~~~~~~~~~-   69 (138)
T 2p9m_A            4 TLKNIKVKDVMTK--NVITAKRHEGVVEAFEKMLKYKISSLPVIDDE-----------NKVIGIVTTTDIGYNLIRDKY-   69 (138)
T ss_dssp             -CTTCBGGGTSBC--SCCCEETTSBHHHHHHHHHHHTCCEEEEECTT-----------CBEEEEEEHHHHHHHHTTTCC-
T ss_pred             ccccCCHHHhhcC--CceEECCCCcHHHHHHHHHHCCCcEEEEECCC-----------CeEEEEEEHHHHHHHHHhhcc-
Confidence            3567899999998  88999999999999999999999999999976           899999999999 76443210 


Q ss_pred             hhhcccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcC-----CCE
Q 013262          328 LQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVG-----LRH  402 (447)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~g-----l~~  402 (447)
                                                            .....++++|++++.++++++++.++++.|.+.+     .++
T Consensus        70 --------------------------------------~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~  111 (138)
T 2p9m_A           70 --------------------------------------TLETTIGDVMTKDVITIHEDASILEAIKKMDISGKKEEIINQ  111 (138)
T ss_dssp             --------------------------------------CSSCBHHHHSCSSCCCEETTSBHHHHHHHHTCC-----CCCE
T ss_pred             --------------------------------------cCCcCHHHHhCCCcEEECCCCCHHHHHHHHHhcCCccccccE
Confidence                                                  0112355678888999999999999999999999     999


Q ss_pred             EEEEeCcccCCCCcEEEEEeHHHHHHHHHhh
Q 013262          403 LLVVPKYEAAGVSPVVGILTRQDLRAFNILT  433 (447)
Q Consensus       403 LpVVd~~~~~g~~~lvGIITr~DLl~~~~~~  433 (447)
                      +||+|+     +|+++|+||++|+++++.++
T Consensus       112 l~Vvd~-----~g~~~Giit~~dll~~~~~~  137 (138)
T 2p9m_A          112 LPVVDK-----NNKLVGIISDGDIIRTISKI  137 (138)
T ss_dssp             EEEECT-----TSBEEEEEEHHHHHHHHHHC
T ss_pred             EEEECC-----CCeEEEEEEHHHHHHHHHhh
Confidence            999996     57899999999999987653

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=99.73  E-value=2.4e-17  Score=148.36  Aligned_cols=132  Identities=17%  Similarity=0.168  Sum_probs=109.9

Q ss_pred             cccccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhh
Q 013262          250 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ  329 (447)
Q Consensus       250 l~~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~  329 (447)
                      +...+|+|+|++..+++++++++++.++++.|.+++++.+||++++          .++++|+|+.+||+..+...    
T Consensus        33 l~~~~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~----------~~~lvGivt~~Dl~~~~~~~----   98 (173)
T 3ocm_A           33 LAERSIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGS----------LDEVVGIGRAKDLVADLITE----   98 (173)
T ss_dssp             HTTSCSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESSS----------TTSEEEEEEHHHHHHHHHHH----
T ss_pred             cCCCCHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCC----------CCCEEEEEEHHHHHHHHhcC----
Confidence            5678999999753368899999999999999999999999999863          16899999999998755321    


Q ss_pred             hcccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCc
Q 013262          330 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKY  409 (447)
Q Consensus       330 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~  409 (447)
                                                           ...+++  |.+++++|++++++.+|+++|.+.+.+.+||+|+ 
T Consensus        99 -------------------------------------~~~~v~--~~~~~~~v~~~~~l~~al~~m~~~~~~~~~Vvde-  138 (173)
T 3ocm_A           99 -------------------------------------GRVRRN--RLRDPIIVHESIGILRLMDTLKRSRGQLVLVADE-  138 (173)
T ss_dssp             -------------------------------------SSCCGG--GSBCCCEECGGGCHHHHHHHHHHSTTCCEEEECT-
T ss_pred             -------------------------------------CcchhH--hcCCCeEECCCCcHHHHHHHHHHcCCeEEEEEeC-
Confidence                                                 012344  3477889999999999999999999999999987 


Q ss_pred             ccCCCCcEEEEEeHHHHHHHHHhhhcCccc
Q 013262          410 EAAGVSPVVGILTRQDLRAFNILTAFPHLE  439 (447)
Q Consensus       410 ~~~g~~~lvGIITr~DLl~~~~~~~~~~~~  439 (447)
                          +|+++||||++|+++++..+...+..
T Consensus       139 ----~g~lvGiIT~~Dil~~l~~~i~de~~  164 (173)
T 3ocm_A          139 ----FGAIEGLVTPIDVFEAIAGEFPDEDE  164 (173)
T ss_dssp             ----TCCEEEEECHHHHHHHHHCCCCCTTS
T ss_pred             ----CCCEEEEEeHHHHHHHHhCcCCCccc
Confidence                57899999999999999876655543

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=99.72  E-value=3.3e-17  Score=142.96  Aligned_cols=137  Identities=19%  Similarity=0.118  Sum_probs=111.5

Q ss_pred             cccccccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhh
Q 013262          248 PWMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWF  327 (447)
Q Consensus       248 ~~l~~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~  327 (447)
                      ..+..++|+|+|.+..+++++++++++.++++.|.+++++.+||+|++           ++++|+|+.+||...+.....
T Consensus        10 ~~l~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~~-----------~~~~Givt~~dl~~~~~~~~~   78 (150)
T 3lqn_A           10 DEFQQIFVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPM-----------YKLHGLISTAMILDGILGLER   78 (150)
T ss_dssp             HHHHHCBHHHHSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-----------CBEEEEEEHHHHHHHTBCSSS
T ss_pred             HhhhcCChhhcccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECCC-----------CCEEEEEEHHHHHHHHHhhcc
Confidence            346789999999952268899999999999999999999999999987           899999999999875532100


Q ss_pred             hhhcccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEe
Q 013262          328 LQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVP  407 (447)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd  407 (447)
                      .               .                  .+.....+++++|.+++.++.+++++.+|+++|.+.+.  +||+|
T Consensus        79 ~---------------~------------------~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd  123 (150)
T 3lqn_A           79 I---------------E------------------FERLEEMKVEQVMKQDIPVLKLEDSFAKALEMTIDHPF--ICAVN  123 (150)
T ss_dssp             B---------------C------------------GGGGGGCBGGGTCBSSCCEEETTCBHHHHHHHHHHCSE--EEEEC
T ss_pred             c---------------c------------------hhHHhcCCHHHHhcCCCceeCCCCCHHHHHHHHHhCCE--EEEEC
Confidence            0               0                  00012345788899999999999999999999999987  99999


Q ss_pred             CcccCCCCcEEEEEeHHHHHHHHHhhhc
Q 013262          408 KYEAAGVSPVVGILTRQDLRAFNILTAF  435 (447)
Q Consensus       408 ~~~~~g~~~lvGIITr~DLl~~~~~~~~  435 (447)
                      +     +|+++|+||++|+++++.+...
T Consensus       124 ~-----~g~~~Giit~~dil~~l~~~~~  146 (150)
T 3lqn_A          124 E-----DGYFEGILTRRAILKLLNKKVR  146 (150)
T ss_dssp             T-----TCBEEEEEEHHHHHHHHHHHC-
T ss_pred             C-----CCcEEEEEEHHHHHHHHHHHhH
Confidence            7     5789999999999999887543

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=99.71  E-value=5.1e-17  Score=136.91  Aligned_cols=123  Identities=11%  Similarity=0.125  Sum_probs=103.6

Q ss_pred             ccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcc
Q 013262          253 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKR  332 (447)
Q Consensus       253 l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~  332 (447)
                      ++|+|+|.+  ++.++++++++.++.+.|.+++++.+||+| +           ++++|+|+.+|+.+.+.+...     
T Consensus         1 m~v~~~m~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~-----------~~~~G~it~~dl~~~~~~~~~-----   61 (125)
T 1pbj_A            1 MRVEDVMVT--DVDTIDITASLEDVLRNYVENAKGSSVVVK-E-----------GVRVGIVTTWDVLEAIAEGDD-----   61 (125)
T ss_dssp             -CHHHHCBC--SCCEEETTCBHHHHHHHHHHHCCCEEEEEE-T-----------TEEEEEEEHHHHHHHHHHTCC-----
T ss_pred             CCHHHhcCC--CceEECCCCcHHHHHHHHHHcCCCEEEEEe-C-----------CeeEEEEeHHHHHHHHhcCCc-----
Confidence            478999998  899999999999999999999999999999 6           899999999999876543110     


Q ss_pred             cchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccC
Q 013262          333 RTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAA  412 (447)
Q Consensus       333 ~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~  412 (447)
                                                       ....+++++|.+++.++++++++.+++++|.+.+.+++||+|+    
T Consensus        62 ---------------------------------~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~----  104 (125)
T 1pbj_A           62 ---------------------------------LAEVKVWEVMERDLVTISPRATIKEAAEKMVKNVVWRLLVEED----  104 (125)
T ss_dssp             ---------------------------------TTTSBHHHHCBCGGGEECTTSCHHHHHHHHHHHTCSEEEEEET----
T ss_pred             ---------------------------------ccccCHHHHcCCCCeEECCCCCHHHHHHHHHhcCCcEEEEEEC----
Confidence                                             0112456677788999999999999999999999999999984    


Q ss_pred             CCCcEEEEEeHHHHHHHHHhh
Q 013262          413 GVSPVVGILTRQDLRAFNILT  433 (447)
Q Consensus       413 g~~~lvGIITr~DLl~~~~~~  433 (447)
                        |+++|+||++|+++++.++
T Consensus       105 --~~~~Gvit~~dl~~~l~~~  123 (125)
T 1pbj_A          105 --DEIIGVISATDILRAKMAK  123 (125)
T ss_dssp             --TEEEEEEEHHHHHHHHC--
T ss_pred             --CEEEEEEEHHHHHHHHHhc
Confidence              6799999999999987654

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.71  E-value=7.7e-17  Score=142.05  Aligned_cols=141  Identities=16%  Similarity=0.159  Sum_probs=110.5

Q ss_pred             ccccccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCe-EEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhh-
Q 013262          249 WMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNG-FPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKW-  326 (447)
Q Consensus       249 ~l~~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~-fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~-  326 (447)
                      ....++|+|+|.+  +++++++++++.++++.|.+++++. +||+|+            ++++|+|+.+||...+.... 
T Consensus        12 ~~~~~~v~~im~~--~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~------------~~~vGivt~~dl~~~~~~~~~   77 (157)
T 1o50_A           12 HMKVKDVCKLISL--KPTVVEEDTPIEEIVDRILEDPVTRTVYVARD------------NKLVGMIPVMHLLKVSGFHFF   77 (157)
T ss_dssp             TCBHHHHTTSSCC--CCEEECTTCBHHHHHHHHHHSTTCCEEEEEET------------TEEEEEEEHHHHHHHHHHHHH
T ss_pred             hhccccHhhcccC--CCceECCCCCHHHHHHHHHhCCCCccEEEEEC------------CEEEEEEEHHHHHHHHhhhHH
Confidence            4567899999999  9999999999999999999999999 999986            48999999999987654210 


Q ss_pred             -hhhhcccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEE
Q 013262          327 -FLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLV  405 (447)
Q Consensus       327 -~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpV  405 (447)
                       +...              ...+...           .......+++++|++ ++++++++++.+|+++|.+.+.+++||
T Consensus        78 ~~~~~--------------~~~~~~~-----------~~~~~~~~v~~im~~-~~~v~~~~~l~~a~~~m~~~~~~~lpV  131 (157)
T 1o50_A           78 GFIPK--------------EELIRSS-----------MKRLIAKNASEIMLD-PVYVHMDTPLEEALKLMIDNNIQEMPV  131 (157)
T ss_dssp             CCCC---------------------C-----------CCCCSSCBHHHHCBC-CCCBCTTSBHHHHHHHHHHHTCSEEEE
T ss_pred             hhhcc--------------HHHHHHH-----------HHHHcCCcHHHHcCC-CeEECCCCCHHHHHHHHHHCCCcEEEE
Confidence             0000              0000000           000122457788988 999999999999999999999999999


Q ss_pred             EeCcccCCCCcEEEEEeHHHHHHHHHhhh
Q 013262          406 VPKYEAAGVSPVVGILTRQDLRAFNILTA  434 (447)
Q Consensus       406 Vd~~~~~g~~~lvGIITr~DLl~~~~~~~  434 (447)
                      +|+     +|+++|+||++|+++++.++.
T Consensus       132 vd~-----~g~~vGiit~~dll~~l~~~~  155 (157)
T 1o50_A          132 VDE-----KGEIVGDLNSLEILLALWKGR  155 (157)
T ss_dssp             ECT-----TSCEEEEEEHHHHHHHHHHSC
T ss_pred             EcC-----CCEEEEEEEHHHHHHHHHHhh
Confidence            996     568999999999999887653

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=99.71  E-value=1.4e-17  Score=145.50  Aligned_cols=121  Identities=10%  Similarity=0.117  Sum_probs=102.7

Q ss_pred             ccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcc
Q 013262          253 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKR  332 (447)
Q Consensus       253 l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~  332 (447)
                      ++|+|+|.+..+++++++++++.++++.|.+++++.+||+|++           ++++|+|+.+|+.+.+.+...     
T Consensus        28 ~~v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~-----------~~~~Givt~~dl~~~~~~~~~-----   91 (149)
T 3k2v_A           28 LRVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDDD-----------MNIIGIFTDGDLRRVFDTGVD-----   91 (149)
T ss_dssp             SBGGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECTT-----------CBEEEEEEHHHHHHHHCSSSC-----
T ss_pred             cCHHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECCC-----------CcEEEEecHHHHHHHHhcCCC-----
Confidence            5899999863357899999999999999999999999999976           899999999999876543110     


Q ss_pred             cchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccC
Q 013262          333 RTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAA  412 (447)
Q Consensus       333 ~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~  412 (447)
                                                       ....++.++|.+++.++++++++.+++++|.+.+.+++||+|+    
T Consensus        92 ---------------------------------~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~----  134 (149)
T 3k2v_A           92 ---------------------------------MRDASIADVMTRGGIRIRPGTLAVDALNLMQSRHITCVLVADG----  134 (149)
T ss_dssp             ---------------------------------CTTCBHHHHSEESCCEECTTCBHHHHHHHHHHHTCSEEEEEET----
T ss_pred             ---------------------------------cccCcHHHHcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEecC----
Confidence                                             0112456678888999999999999999999999999999996    


Q ss_pred             CCCcEEEEEeHHHHHH
Q 013262          413 GVSPVVGILTRQDLRA  428 (447)
Q Consensus       413 g~~~lvGIITr~DLl~  428 (447)
                       + +++|+||++|+++
T Consensus       135 -~-~~~Giit~~dil~  148 (149)
T 3k2v_A          135 -D-HLLGVVHMHDLLR  148 (149)
T ss_dssp             -T-EEEEEEEHHHHTC
T ss_pred             -C-EEEEEEEHHHhhc
Confidence             3 8999999999975

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=99.71  E-value=2.9e-17  Score=143.01  Aligned_cols=142  Identities=23%  Similarity=0.303  Sum_probs=108.8

Q ss_pred             ccccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhh
Q 013262          251 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQE  330 (447)
Q Consensus       251 ~~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~  330 (447)
                      ..++|+|+|.+..+++++++++++.++++.|.+++++.+||+|++           ++++|+|+++|+..++.....   
T Consensus         3 ~~~~v~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-----------~~~~G~vt~~dl~~~~~~~~~---   68 (152)
T 4gqw_A            3 GVYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDED-----------WKLVGLVSDYDLLALDSGDST---   68 (152)
T ss_dssp             CCSBGGGTSEESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEECTT-----------CBEEEEEEHHHHTTCC----C---
T ss_pred             ceEEhhhccCCCCCCeEECCCCcHHHHHHHHHHcCCceEEEEeCC-----------CeEEEEEEHHHHHHhhcccCc---
Confidence            357899999874468899999999999999999999999999987           899999999999653321100   


Q ss_pred             cccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcc
Q 013262          331 KRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYE  410 (447)
Q Consensus       331 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~  410 (447)
                                    +..+...    +.  .  .......++.++|.++++++++++++.+++++|.+.+.+++||+|+  
T Consensus        69 --------------~~~~~~~----~~--~--~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~--  124 (152)
T 4gqw_A           69 --------------WKTFNAV----QK--L--LSKTNGKLVGDLMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVDS--  124 (152)
T ss_dssp             --------------CHHHHHH----HT--C-------CCBHHHHSEESCCCEESSSBHHHHHHHHHHSSCCEEEEECT--
T ss_pred             --------------ccchHHH----HH--H--HHHhccccHHHhcCCCceEECCCCcHHHHHHHHHHCCCCEEEEECC--
Confidence                          0000000    00  0  0001224577788888999999999999999999999999999997  


Q ss_pred             cCCCCcEEEEEeHHHHHHHHHhh
Q 013262          411 AAGVSPVVGILTRQDLRAFNILT  433 (447)
Q Consensus       411 ~~g~~~lvGIITr~DLl~~~~~~  433 (447)
                         +|+++|+||++|+++++.+.
T Consensus       125 ---~g~~~Giit~~dil~~~~~~  144 (152)
T 4gqw_A          125 ---DGKLVGIITRGNVVRAALQI  144 (152)
T ss_dssp             ---TSBEEEEEEHHHHHHHHHC-
T ss_pred             ---CCcEEEEEEHHHHHHHHHhc
Confidence               57899999999999988764

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=99.71  E-value=8e-17  Score=141.50  Aligned_cols=138  Identities=20%  Similarity=0.148  Sum_probs=109.5

Q ss_pred             ccccccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhh
Q 013262          249 WMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFL  328 (447)
Q Consensus       249 ~l~~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~  328 (447)
                      .+..++|+|+|.+..+++++++++++.++++.|.+++++.+||+|++           ++++|+|+.+|+...+....  
T Consensus         7 ~l~~~~v~~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~-----------~~~~Givt~~dl~~~~~~~~--   73 (157)
T 2emq_A            7 EFMQMTVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTS-----------YKLHGLISMTMMMDAILGLE--   73 (157)
T ss_dssp             ---CCBSTTTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECTT-----------CCEEEEEEHHHHHHHSBCSS--
T ss_pred             hHhhCcHHhhccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcCC-----------CCEEEEeeHHHHHHHHhccc--
Confidence            35678999999842267889999999999999999999999999976           89999999999976543210  


Q ss_pred             hhcccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeC
Q 013262          329 QEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPK  408 (447)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~  408 (447)
                        .           ...                  .......++++|.+++.++++++++.+|+++|.+.+.  +||+|+
T Consensus        74 --~-----------~~~------------------~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~  120 (157)
T 2emq_A           74 --R-----------IEF------------------ERLETMKVEEVMNRNIPRLRLDDSLMKAVGLIVNHPF--VCVEND  120 (157)
T ss_dssp             --S-----------BCG------------------GGGGTCBGGGTCBCCCCEEETTSBHHHHHHHHHHSSE--EEEECS
T ss_pred             --c-----------cch------------------HHhcCCcHHHHhCCCCceecCCCcHHHHHHHHhhCCE--EEEEcC
Confidence              0           000                  0001245778899999999999999999999999987  999987


Q ss_pred             cccCCCCcEEEEEeHHHHHHHHHhhhcCc
Q 013262          409 YEAAGVSPVVGILTRQDLRAFNILTAFPH  437 (447)
Q Consensus       409 ~~~~g~~~lvGIITr~DLl~~~~~~~~~~  437 (447)
                           +|+++|+||++|+++++.+...+.
T Consensus       121 -----~g~~~Giit~~dil~~~~~~~~~~  144 (157)
T 2emq_A          121 -----DGYFAGIFTRREVLKQLNKQLHRP  144 (157)
T ss_dssp             -----SSSEEEEEEHHHHHHHHHHTTCCC
T ss_pred             -----CCeEEEEEEHHHHHHHHHHHhhcc
Confidence                 578999999999999988765443

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=99.70  E-value=3.3e-17  Score=147.02  Aligned_cols=156  Identities=19%  Similarity=0.276  Sum_probs=110.6

Q ss_pred             cccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhc
Q 013262          252 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEK  331 (447)
Q Consensus       252 ~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~  331 (447)
                      .++|+|+|.+..+++++++++++.++++.|.+++++++||+|++           ++++|+|+.+||.+++........ 
T Consensus         3 ~~~v~dim~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~-----------~~~~Givt~~dl~~~~~~~~~~~~-   70 (180)
T 3sl7_A            3 GYTVGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDN-----------WTLVGVVSDYDLLALDSISGRSQN-   70 (180)
T ss_dssp             CCBHHHHSEEGGGCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-----------CBEEEEEEHHHHTCC----------
T ss_pred             ceeHHHhcCCCCCceeeCCCCcHHHHHHHHHHcCCCeEEEECCC-----------CeEEEEEEHHHHHhhhhhccccCC-
Confidence            47899999874457899999999999999999999999999987           899999999999743211000000 


Q ss_pred             ccchhhhhhh--cchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCc
Q 013262          332 RRTEEWEVRE--KFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKY  409 (447)
Q Consensus       332 ~~~~~~~~~~--~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~  409 (447)
                         .. ....  ...+..+..    .+..    .......+++++|+++++++++++++.+|+++|.+.+.+++||+|+ 
T Consensus        71 ---~~-~~~~~~~~~~~~~~~----~~~~----~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-  137 (180)
T 3sl7_A           71 ---DT-NLFPDVDSTWKTFNE----LQKL----ISKTYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVDA-  137 (180)
T ss_dssp             --------------CCCSHHH----HHHH----HHTTTTCBHHHHSEESCCCEETTSBHHHHHHHHTTSTTCEEEEECT-
T ss_pred             ---cc-cccccccchhhhhHH----HHHH----HhccccccHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCEEEEECC-
Confidence               00 0000  000000000    0000    0011234578899999999999999999999999999999999997 


Q ss_pred             ccCCCCcEEEEEeHHHHHHHHHhhhcC
Q 013262          410 EAAGVSPVVGILTRQDLRAFNILTAFP  436 (447)
Q Consensus       410 ~~~g~~~lvGIITr~DLl~~~~~~~~~  436 (447)
                          +|+++|+||++|+++++.+...+
T Consensus       138 ----~g~~vGiit~~dil~~~~~~~~~  160 (180)
T 3sl7_A          138 ----DGKLIGILTRGNVVRAALQIKRN  160 (180)
T ss_dssp             ----TCBEEEEEEHHHHHHHHHHHHHT
T ss_pred             ----CCeEEEEEEHHHHHHHHHHHhhh
Confidence                57899999999999998765443

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=99.70  E-value=1.4e-16  Score=147.26  Aligned_cols=127  Identities=16%  Similarity=0.167  Sum_probs=108.2

Q ss_pred             ccccccccccCCCCeeEecCCCCHHHHHHHHhcC---CCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhh
Q 013262          251 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNT---THNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWF  327 (447)
Q Consensus       251 ~~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~---~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~  327 (447)
                      ...+|+++|++  ++++++++.++.++++.|++.   +++.+||+|++           ++++|+|+.+||+..   .  
T Consensus        52 ~~~~v~~iM~~--~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~~-----------~~lvGivt~~dll~~---~--  113 (205)
T 3kxr_A           52 SENEIGRYTDH--QMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEA-----------DKYLGTVRRYDIFKH---E--  113 (205)
T ss_dssp             CTTCGGGGCBC--CCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECTT-----------CBEEEEEEHHHHTTS---C--
T ss_pred             CcchHHhhccC--ceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcCC-----------CeEEEEEEHHHHHhC---C--
Confidence            45689999999  999999999999999999886   67899999987           899999999998431   0  


Q ss_pred             hhhcccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEe
Q 013262          328 LQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVP  407 (447)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd  407 (447)
                                                             ....++++|++++++|++++++.+|+++|.+++++.+||||
T Consensus       114 ---------------------------------------~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD  154 (205)
T 3kxr_A          114 ---------------------------------------PHEPLISLLSEDSRALTANTTLLDAAEAIEHSREIELPVID  154 (205)
T ss_dssp             ---------------------------------------TTSBGGGGCCSSCCCEETTSCHHHHHHHHHTSSCSEEEEEC
T ss_pred             ---------------------------------------CcchHHHHhcCCCeEECCCCCHHHHHHHHHhcCCCEEEEEc
Confidence                                                   01346778989999999999999999999999999999999


Q ss_pred             CcccCCCCcEEEEEeHHHHHHHHHhhhcCccc
Q 013262          408 KYEAAGVSPVVGILTRQDLRAFNILTAFPHLE  439 (447)
Q Consensus       408 ~~~~~g~~~lvGIITr~DLl~~~~~~~~~~~~  439 (447)
                      +     +|+++|+||++|+++.+.++..+...
T Consensus       155 ~-----~g~lvGiIT~~Dil~~i~~e~~ed~~  181 (205)
T 3kxr_A          155 D-----AGELIGRVTLRAATALVREHYEAQLM  181 (205)
T ss_dssp             T-----TSBEEEEEEHHHHHHHHHHHHC----
T ss_pred             C-----CCeEEEEEEHHHHHHHHHHHHHHHHH
Confidence            7     57899999999999998877665544

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=99.70  E-value=9.5e-17  Score=142.08  Aligned_cols=134  Identities=16%  Similarity=0.258  Sum_probs=108.9

Q ss_pred             ccccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhh
Q 013262          251 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQE  330 (447)
Q Consensus       251 ~~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~  330 (447)
                      ..++|+|+|.+  +++++++++++.++++.|.+++++.+||+|++           ++++|+|+.+||...+........
T Consensus         3 ~~~~v~dim~~--~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~-----------~~lvGivt~~dl~~~~~~~~~~~~   69 (160)
T 2o16_A            3 LMIKVEDMMTR--HPHTLLRTHTLNDAKHLMEALDIRHVPIVDAN-----------KKLLGIVSQRDLLAAQESSLQRSA   69 (160)
T ss_dssp             CCCBGGGTSEE--SCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-----------CBEEEEEEHHHHHHHHHHHCC---
T ss_pred             CcCcHHHHhcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC-----------CcEEEEEeHHHHHHHHHHhhcccc
Confidence            35789999998  89999999999999999999999999999976           899999999999876543210000


Q ss_pred             cccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcc
Q 013262          331 KRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYE  410 (447)
Q Consensus       331 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~  410 (447)
                             .                       ........+++++|+++++++++++++.+|+++|.+.+.+.+||+|+  
T Consensus        70 -------~-----------------------~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--  117 (160)
T 2o16_A           70 -------Q-----------------------GDSLAFETPLFEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAK--  117 (160)
T ss_dssp             ------------------------------------CCCBHHHHSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEET--
T ss_pred             -------c-----------------------ccchhcccCHHHHhcCCCeEECCCCCHHHHHHHHHHhCCCEEEEEEC--
Confidence                   0                       00001123567788889999999999999999999999999999984  


Q ss_pred             cCCCCcEEEEEeHHHHHHHHHhh
Q 013262          411 AAGVSPVVGILTRQDLRAFNILT  433 (447)
Q Consensus       411 ~~g~~~lvGIITr~DLl~~~~~~  433 (447)
                          |+++|+||++|+++++.+.
T Consensus       118 ----g~lvGiit~~dil~~~~~~  136 (160)
T 2o16_A          118 ----DVLVGIITDSDFVTIAINL  136 (160)
T ss_dssp             ----TEEEEEECHHHHHHHHHHH
T ss_pred             ----CEEEEEEEHHHHHHHHHHH
Confidence                6799999999999987653

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=99.70  E-value=1.4e-16  Score=143.71  Aligned_cols=159  Identities=20%  Similarity=0.368  Sum_probs=112.6

Q ss_pred             cccccccccccccCCCC--eeEe--cCCCCHHHHHHHHhcCCCCeEEEe--cCCCCCCCCCCCCCceEEEEEeHHHHHHH
Q 013262          248 PWMRTLTVGELIDAKPP--VITL--SGIEKVSQIVDVLRNTTHNGFPVL--DEGVVPPSGLANVATELHGLILRAHLVLA  321 (447)
Q Consensus       248 ~~l~~l~v~diM~~~~~--vv~l--~~~~tv~~~~~~L~~~~~~~fPVV--d~~~~~~~~~~~~~~~lvGiIt~~dL~~~  321 (447)
                      ..+...+|+|+|.+..+  ++++  ++++++.++++.|.+++++.+||+  |++           ++++|+|+.+|+...
T Consensus         6 ~~~~~~~v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~~-----------~~lvGiit~~dl~~~   74 (185)
T 2j9l_A            6 EFAHKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRES-----------QRLVGFVLRRDLIIS   74 (185)
T ss_dssp             ---CCCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTT-----------CBEEEEEEHHHHHHH
T ss_pred             hhhccCcHHHHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECCC-----------CeEEEEEEHHHHHHH
Confidence            34678999999998211  7788  999999999999999999999999  554           899999999999887


Q ss_pred             HHhhhhhhhcccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCC
Q 013262          322 LKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLR  401 (447)
Q Consensus       322 L~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~  401 (447)
                      +.......... ..  .   ..  ..+...   ..+   .........+++++|+++++++++++++.+|+++|.+.+.+
T Consensus        75 ~~~~~~~~~~~-~~--~---~~--~~~~~~---~~~---~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~  140 (185)
T 2j9l_A           75 IENARKKQDGV-VS--T---SI--IYFTEH---SPP---LPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLR  140 (185)
T ss_dssp             HHHHHTSCSCC-CT--T---CE--EECSSS---CCC---CCTTCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCS
T ss_pred             HHhhcccCCCc-cc--c---ce--eecccC---Ccc---cccccccCccHHHhhCcCCeEeCCCCCHHHHHHHHHhCCCc
Confidence            65421000000 00  0   00  000000   000   00001123468889999999999999999999999999999


Q ss_pred             EEEEEeCcccCCCCcEEEEEeHHHHHHHHHhhhcCc
Q 013262          402 HLLVVPKYEAAGVSPVVGILTRQDLRAFNILTAFPH  437 (447)
Q Consensus       402 ~LpVVd~~~~~g~~~lvGIITr~DLl~~~~~~~~~~  437 (447)
                      ++||+|+      |+++|+||++|+++++.+.....
T Consensus       141 ~l~Vvd~------g~~vGiit~~dll~~l~~~~~~~  170 (185)
T 2j9l_A          141 QCLVTHN------GRLLGIITKKDVLKHIAQMANQD  170 (185)
T ss_dssp             EEEEEET------TEEEEEEEHHHHHHHHHHHCC--
T ss_pred             EEEEEEC------CEEEEEEEHHHHHHHHHHhhccc
Confidence            9999984      67999999999999988765543

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=99.70  E-value=1.6e-16  Score=136.05  Aligned_cols=124  Identities=17%  Similarity=0.164  Sum_probs=104.4

Q ss_pred             cccccccc---CCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhh
Q 013262          253 LTVGELID---AKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ  329 (447)
Q Consensus       253 l~v~diM~---~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~  329 (447)
                      .+|+|+|.   +  +++++++++++.++++.|.+++++.+||+| +           ++++|+|+.+|+.+.+.....  
T Consensus         6 ~~v~~im~~~~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~-----------~~~~Givt~~dl~~~~~~~~~--   69 (135)
T 2rc3_A            6 KTVKHLLQEKGH--TVVAIGPDDSVFNAMQKMAADNIGALLVMK-D-----------EKLVGILTERDFSRKSYLLDK--   69 (135)
T ss_dssp             CBHHHHHHHHCC--CCCEECTTSBHHHHHHHHHHHTCSEEEEEE-T-----------TEEEEEEEHHHHHHHGGGSSS--
T ss_pred             eeHHHHHhcCCC--CcEEECCCCcHHHHHHHHHhcCCCEEEEEE-C-----------CEEEEEEehHHHHHHHHHcCC--
Confidence            38999999   7  889999999999999999999999999998 5           899999999999753221100  


Q ss_pred             hcccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCc
Q 013262          330 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKY  409 (447)
Q Consensus       330 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~  409 (447)
                                                         ......++++|.+++.++++++++.+++++|.+.+.+++||+|+ 
T Consensus        70 -----------------------------------~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~-  113 (135)
T 2rc3_A           70 -----------------------------------PVKDTQVKEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLDD-  113 (135)
T ss_dssp             -----------------------------------CGGGSBGGGTSBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEET-
T ss_pred             -----------------------------------CcccCCHHHhccCCCeEECCCCcHHHHHHHHHHhCCCEEEEEeC-
Confidence                                               00123577889899999999999999999999999999999984 


Q ss_pred             ccCCCCcEEEEEeHHHHHHHHHhh
Q 013262          410 EAAGVSPVVGILTRQDLRAFNILT  433 (447)
Q Consensus       410 ~~~g~~~lvGIITr~DLl~~~~~~  433 (447)
                           |+++|+||++|+++++.++
T Consensus       114 -----g~~~Giit~~dll~~~~~~  132 (135)
T 2rc3_A          114 -----GKVIGLLSIGDLVKDAISQ  132 (135)
T ss_dssp             -----TEEEEEEEHHHHHHHHHC-
T ss_pred             -----CEEEEEEEHHHHHHHHHhc
Confidence                 5799999999999987654

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=99.69  E-value=2.1e-16  Score=136.33  Aligned_cols=127  Identities=17%  Similarity=0.266  Sum_probs=102.0

Q ss_pred             ccccccc---cccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhh
Q 013262          251 RTLTVGE---LIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWF  327 (447)
Q Consensus       251 ~~l~v~d---iM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~  327 (447)
                      .+.++++   +|.+  +++++++++++.++++.|.+++++.+||+|++           ++++|+|+.+|+...+....+
T Consensus         6 ~~~~v~~~~~~~~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-----------~~~~Givt~~dl~~~~~~~~~   72 (144)
T 2nyc_A            6 LKIPIGDLNIITQD--NMKSCQMTTPVIDVIQMLTQGRVSSVPIIDEN-----------GYLINVYEAYDVLGLIKGGIY   72 (144)
T ss_dssp             GGSBGGGSSCCBCS--SCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-----------CBEEEEEEHHHHHHHHHTC--
T ss_pred             hhcchhhcCCCCCC--CceEECCCCcHHHHHHHHHHcCcceeeEEcCC-----------CcEEEEEcHHHHHHHhccccc
Confidence            3557778   8887  88999999999999999999999999999976           899999999999876543110


Q ss_pred             hhhcccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccC------CCceecCCCCHHHHHHHHHHcCCC
Q 013262          328 LQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNT------TPYTVIESMSVAKAMVLFRQVGLR  401 (447)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~------~p~tV~~~~sL~~a~~lf~~~gl~  401 (447)
                      ..           ...                          .++++|.+      ++.++++++++.+++++|.+.+.+
T Consensus        73 ~~-----------~~~--------------------------~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~  115 (144)
T 2nyc_A           73 ND-----------LSL--------------------------SVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVH  115 (144)
T ss_dssp             -------------CCS--------------------------BHHHHHHHCC------CEECTTSBHHHHHHHHHHHTCS
T ss_pred             cc-----------CCc--------------------------cHHHHHhcCccccCCCeEECCCCcHHHHHHHHHHCCCC
Confidence            00           011                          23334433      578999999999999999999999


Q ss_pred             EEEEEeCcccCCCCcEEEEEeHHHHHHHHHh
Q 013262          402 HLLVVPKYEAAGVSPVVGILTRQDLRAFNIL  432 (447)
Q Consensus       402 ~LpVVd~~~~~g~~~lvGIITr~DLl~~~~~  432 (447)
                      ++||+|+     +|+++|+||++|+++++.+
T Consensus       116 ~l~Vvd~-----~g~~~Giit~~dil~~l~~  141 (144)
T 2nyc_A          116 RFFVVDD-----VGRLVGVLTLSDILKYILL  141 (144)
T ss_dssp             EEEEECT-----TSBEEEEEEHHHHHHHHHH
T ss_pred             EEEEECC-----CCCEEEEEEHHHHHHHHHh
Confidence            9999997     5789999999999998765

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=99.69  E-value=2.7e-16  Score=138.88  Aligned_cols=134  Identities=18%  Similarity=0.287  Sum_probs=105.0

Q ss_pred             cccccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhh
Q 013262          250 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ  329 (447)
Q Consensus       250 l~~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~  329 (447)
                      ...++|+|+|.+  +++++++++++.++.+.|.+++++++||+|++         ++++++|+|+.+|+...+.......
T Consensus        10 ~~~~~v~dim~~--~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~---------~~~~~~Givt~~dl~~~~~~~~~~~   78 (164)
T 2pfi_A           10 SHHVRVEHFMNH--SITTLAKDTPLEEVVKVVTSTDVTEYPLVEST---------ESQILVGIVQRAQLVQALQAEPPSR   78 (164)
T ss_dssp             CCSCBHHHHCBC--CCCCEETTCBHHHHHHHHHTCCCSEEEEESCT---------TTCBEEEEEEHHHHHHHHHC-----
T ss_pred             ccCCCHHHHcCC--CCeEECCCCcHHHHHHHHHhCCCCceeEEecC---------CCCEEEEEEEHHHHHHHHHhhcccc
Confidence            456889999999  89999999999999999999999999999961         1189999999999987664321000


Q ss_pred             hcccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCC------CceecCCCCHHHHHHHHHHcCCCEE
Q 013262          330 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTT------PYTVIESMSVAKAMVLFRQVGLRHL  403 (447)
Q Consensus       330 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~------p~tV~~~~sL~~a~~lf~~~gl~~L  403 (447)
                      .        ......+                          +++|.+.      +.++++++++.+|+++|.+.+.+++
T Consensus        79 ~--------~~~~~~v--------------------------~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l  124 (164)
T 2pfi_A           79 A--------PGHQQCL--------------------------QDILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSL  124 (164)
T ss_dssp             ----------CCCCBH--------------------------HHHHHTTCCCBCCCCCEETTCBHHHHHHHHHHTTCSEE
T ss_pred             C--------Ccccchh--------------------------hhhhcccccccCCceEECCCCcHHHHHHHHHHhCCCEE
Confidence            0        0001122                          2233333      7899999999999999999999999


Q ss_pred             EEEeCcccCCCCcEEEEEeHHHHHHHHHhhh
Q 013262          404 LVVPKYEAAGVSPVVGILTRQDLRAFNILTA  434 (447)
Q Consensus       404 pVVd~~~~~g~~~lvGIITr~DLl~~~~~~~  434 (447)
                      ||+|+      |+++|+||++|+++++.+..
T Consensus       125 pVvd~------g~l~Giit~~dil~~~~~~~  149 (164)
T 2pfi_A          125 FVTSR------GRAVGCVSWVEMKKAISNLT  149 (164)
T ss_dssp             EEEET------TEEEEEEEHHHHHHHHHHHH
T ss_pred             EEEEC------CEEEEEEEHHHHHHHHHhhh
Confidence            99984      57999999999999888754

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=99.69  E-value=3.2e-17  Score=144.64  Aligned_cols=121  Identities=19%  Similarity=0.292  Sum_probs=101.1

Q ss_pred             cccccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhh
Q 013262          250 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ  329 (447)
Q Consensus       250 l~~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~  329 (447)
                      +...+|+|+|++..+++++++++++.++++.|.+++++.+||+|++          .++++|+|+.+|+...+...    
T Consensus        35 l~~~~v~diM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~~----------~~~lvGivt~~dl~~~~~~~----  100 (156)
T 3oi8_A           35 FSDLEVRDAMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGED----------KDEVLGILHAKDLLKYMFNP----  100 (156)
T ss_dssp             HTTCBGGGTCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSS----------TTCEEEEEEGGGGGGGSSCG----
T ss_pred             cCCCCHhheeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCC----------CCcEEEEEEHHHHHHHHHcC----
Confidence            5678999999864368899999999999999999999999999875          14899999999996532110    


Q ss_pred             hcccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCc
Q 013262          330 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKY  409 (447)
Q Consensus       330 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~  409 (447)
                                                           ...+++++|.+ ++++++++++.+|+++|.+.+.+++||+|+ 
T Consensus       101 -------------------------------------~~~~v~~im~~-~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~-  141 (156)
T 3oi8_A          101 -------------------------------------EQFHLKSILRP-AVFVPEGKSLTALLKEFREQRNHMAIVIDE-  141 (156)
T ss_dssp             -------------------------------------GGCCHHHHCBC-CCEEETTSBHHHHHHHHHHTTCCEEEEECT-
T ss_pred             -------------------------------------CcccHHHHcCC-CEEECCCCCHHHHHHHHHhcCCeEEEEECC-
Confidence                                                 01235566754 889999999999999999999999999997 


Q ss_pred             ccCCCCcEEEEEeHHHHH
Q 013262          410 EAAGVSPVVGILTRQDLR  427 (447)
Q Consensus       410 ~~~g~~~lvGIITr~DLl  427 (447)
                          +|+++|+||++|++
T Consensus       142 ----~g~~~Givt~~Dil  155 (156)
T 3oi8_A          142 ----YGGTSGLVTFEDII  155 (156)
T ss_dssp             ----TSSEEEEEEHHHHC
T ss_pred             ----CCCEEEEEEHHHhc
Confidence                57899999999985

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=99.68  E-value=5.6e-17  Score=138.45  Aligned_cols=126  Identities=17%  Similarity=0.309  Sum_probs=103.2

Q ss_pred             cccccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHH-HHHhhhhh
Q 013262          250 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL-ALKKKWFL  328 (447)
Q Consensus       250 l~~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~-~L~~~~~~  328 (447)
                      +...+|+|+|.+  ++.++++++++.++++.|.+++++.+||+|++           ++++|+|+.+|+.. ++....  
T Consensus         5 ~~~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-----------~~~~Givt~~dl~~~~~~~~~--   69 (133)
T 1y5h_A            5 FTMTTARDIMNA--GVTCVGEHETLTAAAQYMREHDIGALPICGDD-----------DRLHGMLTDRDIVIKGLAAGL--   69 (133)
T ss_dssp             ---CCHHHHSEE--TCCCEETTSBHHHHHHHHHHHTCSEEEEECGG-----------GBEEEEEEHHHHHHTTGGGTC--
T ss_pred             hhhcCHHHHhcC--CceEeCCCCCHHHHHHHHHHhCCCeEEEECCC-----------CeEEEEEeHHHHHHHHHhcCC--
Confidence            445789999998  88999999999999999999999999999876           89999999999973 322110  


Q ss_pred             hhcccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeC
Q 013262          329 QEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPK  408 (447)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~  408 (447)
                               .                           ....+++++|.+++.++++++++.+++++|.+.+.+++||+|+
T Consensus        70 ---------~---------------------------~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~  113 (133)
T 1y5h_A           70 ---------D---------------------------PNTATAGELARDSIYYVDANASIQEMLNVMEEHQVRRVPVISE  113 (133)
T ss_dssp             ---------C---------------------------TTTSBHHHHHTTCCCCEETTCCHHHHHHHHHHHTCSEEEEEET
T ss_pred             ---------C---------------------------ccccCHHHHhcCCCEEECCCCCHHHHHHHHHHcCCCEEEEEEC
Confidence                     0                           0112456677788999999999999999999999999999984


Q ss_pred             cccCCCCcEEEEEeHHHHHHHHHh
Q 013262          409 YEAAGVSPVVGILTRQDLRAFNIL  432 (447)
Q Consensus       409 ~~~~g~~~lvGIITr~DLl~~~~~  432 (447)
                            |+++|+||++|+++++.+
T Consensus       114 ------g~~~Giit~~dil~~l~~  131 (133)
T 1y5h_A          114 ------HRLVGIVTEADIARHLPE  131 (133)
T ss_dssp             ------TEEEEEEEHHHHHHTCC-
T ss_pred             ------CEEEEEEEHHHHHHHHHh
Confidence                  579999999999987543

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=99.67  E-value=3.1e-16  Score=141.98  Aligned_cols=126  Identities=18%  Similarity=0.212  Sum_probs=108.0

Q ss_pred             cccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhc
Q 013262          252 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEK  331 (447)
Q Consensus       252 ~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~  331 (447)
                      .++|+|+|.+  +++++++++++.++++.|.+++++.+||+|++           ++++|+|+.+||+..+....    .
T Consensus         8 ~~~v~~im~~--~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~~-----------g~~vGivt~~dl~~~~~~~~----~   70 (184)
T 1pvm_A            8 FMRVEKIMNS--NFKTVNWNTTVFDAVKIMNENHLYGLVVKDDN-----------GNDVGLLSERSIIKRFIPRN----K   70 (184)
T ss_dssp             CCBGGGTSBT--TCCEEETTCBHHHHHHHHHHHTCCEEEEECTT-----------SCEEEEEEHHHHHHHTGGGC----C
T ss_pred             ccCHHHhcCC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC-----------CcEEEEEeHHHHHHHHhhcc----c
Confidence            3789999998  89999999999999999999999999999876           89999999999976543210    0


Q ss_pred             ccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCccc
Q 013262          332 RRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEA  411 (447)
Q Consensus       332 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~  411 (447)
                                                       .....+++++|.++++++.+++++.+|+++|.+.+.+++||+|+   
T Consensus        71 ---------------------------------~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---  114 (184)
T 1pvm_A           71 ---------------------------------KPDEVPIRLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDD---  114 (184)
T ss_dssp             ---------------------------------CGGGSBGGGTSBSSCCEEETTCBHHHHHHHHHHHTCSEEEEECT---
T ss_pred             ---------------------------------CcccCCHHHHhCCCCcEECCCCCHHHHHHHHHHcCCcEEEEEcC---
Confidence                                             00123577889889999999999999999999999999999987   


Q ss_pred             CCCCcEEEEEeHHHHHHHHHh
Q 013262          412 AGVSPVVGILTRQDLRAFNIL  432 (447)
Q Consensus       412 ~g~~~lvGIITr~DLl~~~~~  432 (447)
                        +|+++|+||++|+++++.+
T Consensus       115 --~g~~~Givt~~dll~~~~~  133 (184)
T 1pvm_A          115 --PGRVVGIVTLTDLSRYLSR  133 (184)
T ss_dssp             --TCCEEEEEEHHHHTTTSCH
T ss_pred             --CCeEEEEEEHHHHHHHHHh
Confidence              5689999999999987665

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=99.66  E-value=3.3e-16  Score=137.73  Aligned_cols=130  Identities=18%  Similarity=0.229  Sum_probs=107.3

Q ss_pred             ccccccccCC----CCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhh
Q 013262          253 LTVGELIDAK----PPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFL  328 (447)
Q Consensus       253 l~v~diM~~~----~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~  328 (447)
                      .+|+|+|.+.    .+++++++++++.++++.|.+++++.+||++ +           ++++|+|+.+|+.+.+......
T Consensus         7 ~~v~dim~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~-~-----------~~~~Givt~~dl~~~~~~~~~~   74 (157)
T 4fry_A            7 TTVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVD-G-----------DDIAGIVTERDYARKVVLQERS   74 (157)
T ss_dssp             CBHHHHHHHSTTTTCCCCEEETTSBHHHHHHHHHHHTCSEEEEES-S-----------SSEEEEEEHHHHHHHSGGGTCC
T ss_pred             HHHHHHHhcccccCCCCeEECCCCcHHHHHHHHHHcCCCEEEEee-C-----------CEEEEEEEHHHHHHHHHhccCC
Confidence            5799999952    2678999999999999999999999999965 4           8999999999998755331100


Q ss_pred             hhcccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeC
Q 013262          329 QEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPK  408 (447)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~  408 (447)
                                                           .....++++|.+++.++.+++++.+++++|.+.+.+++||+|+
T Consensus        75 -------------------------------------~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~  117 (157)
T 4fry_A           75 -------------------------------------SKATRVEEIMTAKVRYVEPSQSTDECMALMTEHRMRHLPVLDG  117 (157)
T ss_dssp             -------------------------------------SSSCBHHHHSBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEET
T ss_pred             -------------------------------------ccccCHHHHcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEEC
Confidence                                                 0123466778889999999999999999999999999999984


Q ss_pred             cccCCCCcEEEEEeHHHHHHHHHhhhcCc
Q 013262          409 YEAAGVSPVVGILTRQDLRAFNILTAFPH  437 (447)
Q Consensus       409 ~~~~g~~~lvGIITr~DLl~~~~~~~~~~  437 (447)
                            |+++|+||++|+++++.++....
T Consensus       118 ------g~~~Giit~~dil~~l~~~~~~~  140 (157)
T 4fry_A          118 ------GKLIGLISIGDLVKSVIADQQFT  140 (157)
T ss_dssp             ------TEEEEEEEHHHHHHHHHTTCCCC
T ss_pred             ------CEEEEEEEHHHHHHHHHHHHHhh
Confidence                  57999999999999988765443

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=99.66  E-value=1.7e-16  Score=140.10  Aligned_cols=136  Identities=19%  Similarity=0.132  Sum_probs=108.9

Q ss_pred             cccccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhh
Q 013262          250 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ  329 (447)
Q Consensus       250 l~~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~  329 (447)
                      +..++|+|+|.+..+++++++++++.++++.|.+++++.+||+|++           ++++|+|+.+||...+....-  
T Consensus        11 l~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~-----------~~lvGivt~~dl~~~~~~~~~--   77 (159)
T 1yav_A           11 LLEATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPS-----------YRLHGLIGTNMIMNSIFGLER--   77 (159)
T ss_dssp             CTTCBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTT-----------CBEEEEEEHHHHHHHHBCSSS--
T ss_pred             HhHhhHHHHhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECCC-----------CCEEEEeEHHHHHHHhhhhcc--
Confidence            5568999999753357889999999999999999999999999987           899999999999876533100  


Q ss_pred             hcccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCc
Q 013262          330 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKY  409 (447)
Q Consensus       330 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~  409 (447)
                                   +..                  ......+++++|.+++.++.+++++.+|+++|.+.+.  +||+|+ 
T Consensus        78 -------------~~~------------------~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~--lpVvd~-  123 (159)
T 1yav_A           78 -------------IEF------------------EKLDQITVEEVMLTDIPRLHINDPIMKGFGMVINNGF--VCVEND-  123 (159)
T ss_dssp             -------------BCG------------------GGTTTSBHHHHSBCSCCEEETTSBHHHHHHHTTTCSE--EEEECT-
T ss_pred             -------------cch------------------hhhccCCHHHhcCCCCceEcCCCCHHHHHHHHHhCCE--EEEEeC-
Confidence                         000                  0001235677888899999999999999999999877  999997 


Q ss_pred             ccCCCCcEEEEEeHHHHHHHHHhhhcC
Q 013262          410 EAAGVSPVVGILTRQDLRAFNILTAFP  436 (447)
Q Consensus       410 ~~~g~~~lvGIITr~DLl~~~~~~~~~  436 (447)
                          +|+++|+||++|+++++.+...+
T Consensus       124 ----~g~~vGiit~~dil~~~~~~~~~  146 (159)
T 1yav_A          124 ----EQVFEGIFTRRVVLKELNKHIRS  146 (159)
T ss_dssp             ----TCBEEEEEEHHHHHHHHHHHC--
T ss_pred             ----CCeEEEEEEHHHHHHHHHHHHHh
Confidence                57899999999999998876544

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=99.64  E-value=9.8e-16  Score=161.29  Aligned_cols=157  Identities=14%  Similarity=0.152  Sum_probs=125.9

Q ss_pred             hcCCchHHHHHHhhCCCCCCCCCCcccccccccccccCCCCeeEecCC-CCHHHHHHHHhcCCCCeEEEec-CCCCCCCC
Q 013262          224 SFNPSIYEIILELKGLPFLDAHPEPWMRTLTVGELIDAKPPVITLSGI-EKVSQIVDVLRNTTHNGFPVLD-EGVVPPSG  301 (447)
Q Consensus       224 ~l~~sIYd~~l~~kg~p~l~~~~~~~l~~l~v~diM~~~~~vv~l~~~-~tv~~~~~~L~~~~~~~fPVVd-~~~~~~~~  301 (447)
                      ++...+++.++..+++..........+...+|+|+|++  ++++++++ +++.+++++|.+++++.+||+| ++      
T Consensus       355 yls~~~~~~~l~~rg~~~~~~~~~~~l~~~~V~diM~~--~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~------  426 (527)
T 3pc3_A          355 YMTKFVSDNWMEARNFKEPVNEHGHWWWSLAIAELELP--APPVILKSDATVGEAIALMKKHRVDQLPVVDQDD------  426 (527)
T ss_dssp             GTTTTTSHHHHHHTTSSCCCCTTCCTTTTSBGGGGCCC--CCSCCEETTCBHHHHHHHHHHHTCSEEEEECTTT------
T ss_pred             hHhhhhcHHHHHhcCCccccccccccccCCcHHHhCcC--CCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCC------
Confidence            33444567888888886554444556888999999998  89999999 9999999999999999999999 55      


Q ss_pred             CCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCce
Q 013262          302 LANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYT  381 (447)
Q Consensus       302 ~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~t  381 (447)
                           ++++|+|+.+||++.+.....                                      ....+++++|++++++
T Consensus       427 -----g~lvGiVt~~Dll~~l~~~~~--------------------------------------~~~~~V~~im~~~~~~  463 (527)
T 3pc3_A          427 -----GSVLGVVGQETLITQIVSMNR--------------------------------------QQSDPAIKALNKRVIR  463 (527)
T ss_dssp             -----CCEEEEEEHHHHHHHHHHHCC--------------------------------------CTTSBGGGGEETTCCE
T ss_pred             -----CEEEEEEEHHHHHHHHHhccC--------------------------------------cCCCcHHHHhcCCCeE
Confidence                 899999999999876643110                                      0123577889999999


Q ss_pred             ecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHHHhhh
Q 013262          382 VIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTA  434 (447)
Q Consensus       382 V~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~~~~~  434 (447)
                      |++++++.++.++|.+.++  +||||++ +.++++++||||++||++++.++.
T Consensus       464 v~~~~~l~~a~~~m~~~~~--~pVVd~~-~~~~g~lvGIVT~~Dll~~l~~~~  513 (527)
T 3pc3_A          464 LNESEILGKLARVLEVDPS--VLILGKN-PAGKVELKALATKLDVTTFIAAGK  513 (527)
T ss_dssp             EETTSBHHHHHHHHTTCSE--EEEEEEC-SSSCEEEEEEEEHHHHHHHHHTCC
T ss_pred             ECCCCcHHHHHHHHhhCCE--EEEEeCC-cccCCeEEEEEEHHHHHHHHHhcc
Confidence            9999999999999987765  7999860 001278999999999999988754

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=99.63  E-value=1.4e-15  Score=144.08  Aligned_cols=163  Identities=15%  Similarity=0.142  Sum_probs=106.9

Q ss_pred             cccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhc
Q 013262          252 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEK  331 (447)
Q Consensus       252 ~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~  331 (447)
                      ..+|+|+|.+  +++++++++++.++++.|.+++++.+||+|++           ++++|+|+..|+.+.+....-....
T Consensus         6 ~~~v~~im~~--~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~-----------~~l~Giit~~di~~~~~~~~~~~~~   72 (245)
T 3l2b_A            6 KLKVEDLEMD--KIAPLAPEVSLKMAWNIMRDKNLKSIPVADGN-----------NHLLGMLSTSNITATYMDIWDSNIL   72 (245)
T ss_dssp             CCBGGGSCCB--CCCCBCTTCBHHHHHHHHHHTTCSEEEEECTT-----------CBEEEEEEHHHHHHHHHCCCCTTHH
T ss_pred             cCcHHHhcCC--CCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC-----------CEEEEEEEHHHHHHHHHHhhhhhhh
Confidence            4689999998  89999999999999999999999999999987           8999999999999877542100000


Q ss_pred             --ccchhhhhhh-----------------------cchHHHHhhh----------------------cc---------cc
Q 013262          332 --RRTEEWEVRE-----------------------KFSWVELAER----------------------EG---------KI  355 (447)
Q Consensus       332 --~~~~~~~~~~-----------------------~~~~~d~~~~----------------------~~---------~~  355 (447)
                        ....-.+...                       ......+.+.                      +.         .+
T Consensus        73 ~~~~~~~~~v~~~l~~~~l~~~~~~~~~~g~~~i~a~~~~~~~~~~~~~~ivIvgdr~~~~~~~i~~~~~~liit~~~~~  152 (245)
T 3l2b_A           73 AKSATSLDNILDTLSAEAQNINEERKVFPGKVVVAAMQAESLKEFISEGDIAIAGDRAEIQAELIELKVSLLIVTGGHTP  152 (245)
T ss_dssp             HHTTCCHHHHHHHTTCEEEECCTTCCCCCSCEEECCSCGGGGGGTCCTTCEEEECSCHHHHHHHHHTTCSEEEECTTCCC
T ss_pred             hhccCCHHHHHHHhCCEEEeccCCcceeeeeEEEEeCChHHHHhcCCCCCEEEECCCHHHHHHHHHcCCCEEEECCCCCC
Confidence              0000000000                       0000000000                      00         00


Q ss_pred             -------------------cccccchhhhhhccCcccccc-CCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCC
Q 013262          356 -------------------EEVAVTSEEMEMYIDLHPLTN-TTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVS  415 (447)
Q Consensus       356 -------------------~~~~l~~~~~~~~idl~~im~-~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~  415 (447)
                                         .+.............++++|+ +++.++++++++.+++++|.+.+++++||+|+     +|
T Consensus       153 ~~~v~~~a~~~~~~~i~t~~d~~~~~~~~~~~~~v~~im~~~~~~~~~~~~~~~~~~~~m~~~~~~~~pVvd~-----~~  227 (245)
T 3l2b_A          153 SKEIIELAKKNNITVITTPHDSFTASRLIVQSLPVDYVMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDE-----NN  227 (245)
T ss_dssp             CHHHHHHHHHHTCEEEECSSCHHHHHHHGGGGSBHHHHSBCTTCCCEETTSBHHHHHHHHHHHCCSEEEEECT-----TC
T ss_pred             CHHHHHHHHHcCCeEEEeCCChHHHHHHHhcCCceeeEecCCccEEECCCCcHHHHHHHHHhcCCceEEEEcC-----CC
Confidence                               000000011123456889999 89999999999999999999999999999997     57


Q ss_pred             cEEEEEeHHHHHHHHHh
Q 013262          416 PVVGILTRQDLRAFNIL  432 (447)
Q Consensus       416 ~lvGIITr~DLl~~~~~  432 (447)
                      +++|+||++|++++..+
T Consensus       228 ~~~Giit~~dll~~~~~  244 (245)
T 3l2b_A          228 KVVGSIARFHLISTHKK  244 (245)
T ss_dssp             BEEEEEECC--------
T ss_pred             eEEEEEEHHHhhchhhc
Confidence            89999999999987654

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=99.62  E-value=1.2e-15  Score=148.18  Aligned_cols=127  Identities=17%  Similarity=0.142  Sum_probs=107.7

Q ss_pred             ccccccccccCCCCeeEecCCCCHHHHHHHHhcC-----CCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhh
Q 013262          251 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNT-----THNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKK  325 (447)
Q Consensus       251 ~~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~-----~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~  325 (447)
                      ...+|+++|++  +++++++++++.++++.|+++     +++.+||+|++           ++++|+|+.+|++...   
T Consensus       135 ~~~~v~~iM~~--~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~~-----------~~lvGivt~~dll~~~---  198 (286)
T 2oux_A          135 EDETAGAIMTT--EFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQE-----------NHLVGVISLRDLIVND---  198 (286)
T ss_dssp             CTTBHHHHCBS--CCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTT-----------CBEEEEEEHHHHTTSC---
T ss_pred             ChHHHHHhCCC--CceEECCCCcHHHHHHHHHHcccCccceeEEEEEcCC-----------CeEEEEEEHHHHHcCC---
Confidence            45789999999  999999999999999999987     78889999986           8999999999985310   


Q ss_pred             hhhhhcccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEE
Q 013262          326 WFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLV  405 (447)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpV  405 (447)
                                                               ....++++|++++++|++++++.+|+++|.+++++++||
T Consensus       199 -----------------------------------------~~~~v~~im~~~~~~v~~~~~l~ea~~~m~~~~~~~lpV  237 (286)
T 2oux_A          199 -----------------------------------------DDTLIADILNERVISVHVGDDQEDVAQTIRDYDFLAVPV  237 (286)
T ss_dssp             -----------------------------------------TTSBHHHHSBSCCCCEETTSBHHHHHHHHHHHTCSEEEE
T ss_pred             -----------------------------------------CCCcHHHHcCCCCeeecCCCCHHHHHHHHHHcCCcEEEE
Confidence                                                     012356678889999999999999999999999999999


Q ss_pred             EeCcccCCCCcEEEEEeHHHHHHHHHhhhcCccc
Q 013262          406 VPKYEAAGVSPVVGILTRQDLRAFNILTAFPHLE  439 (447)
Q Consensus       406 Vd~~~~~g~~~lvGIITr~DLl~~~~~~~~~~~~  439 (447)
                      ||+     +|+++|+||++|+++.+.++..+...
T Consensus       238 Vd~-----~g~lvGiIT~~Dil~~i~~e~~ed~~  266 (286)
T 2oux_A          238 TDY-----DDHLLGIVTVDDIIDVIDDEAASDYS  266 (286)
T ss_dssp             ECT-----TCBEEEEEEHHHHHHHHHHHHHC---
T ss_pred             EcC-----CCeEEEEEEHHHHHHHHHHHhHHHHH
Confidence            997     57899999999999998876554443

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.61  E-value=2e-15  Score=140.33  Aligned_cols=119  Identities=16%  Similarity=0.153  Sum_probs=104.7

Q ss_pred             ccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcc
Q 013262          253 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKR  332 (447)
Q Consensus       253 l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~  332 (447)
                      .+++++|.+  +++++++++++.+++++|.+++++++||+|++           ++++|+|+.+|+...+.         
T Consensus        13 ~~~~~~~~~--~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~-----------~~l~Givt~~dl~~~~~---------   70 (213)
T 1vr9_A           13 MKVKKWVTQ--DFPMVEESATVRECLHRMRQYQTNECIVKDRE-----------GHFRGVVNKEDLLDLDL---------   70 (213)
T ss_dssp             CBGGGGCBS--CSCEEETTCBHHHHHHHHHHTTSSEEEEECTT-----------SBEEEEEEGGGGTTSCT---------
T ss_pred             cCHHHhhcC--CCeEECCCCcHHHHHHHHHHCCCCEEEEEcCC-----------CEEEEEEEHHHHHhhcC---------
Confidence            578999999  99999999999999999999999999999976           89999999998843110         


Q ss_pred             cchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccC
Q 013262          333 RTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAA  412 (447)
Q Consensus       333 ~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~  412 (447)
                                                         ...++++|.++++++++++++.+|+++|.+.+.+++||+|+    
T Consensus        71 -----------------------------------~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~----  111 (213)
T 1vr9_A           71 -----------------------------------DSSVFNKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDE----  111 (213)
T ss_dssp             -----------------------------------TSBSGGGCBCTTCCEETTSBHHHHHHHHHHCCCSEEEEECT----
T ss_pred             -----------------------------------CCcHHHHccCCCEEECCCCcHHHHHHHHHHhCCCEEEEEcC----
Confidence                                               12467788899999999999999999999999999999987    


Q ss_pred             CCCcEEEEEeHHHHHHHHHhh
Q 013262          413 GVSPVVGILTRQDLRAFNILT  433 (447)
Q Consensus       413 g~~~lvGIITr~DLl~~~~~~  433 (447)
                       +|+++|+||++|+++.+...
T Consensus       112 -~g~lvGiit~~Dil~~~~~~  131 (213)
T 1vr9_A          112 -EMRLKGAVSLHDFLEALIEA  131 (213)
T ss_dssp             -TCBEEEEEEHHHHHHHHHHS
T ss_pred             -CCEEEEEEEHHHHHHHHHHH
Confidence             57899999999999987653

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.61  E-value=2e-15  Score=146.52  Aligned_cols=136  Identities=18%  Similarity=0.178  Sum_probs=112.9

Q ss_pred             cccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhc
Q 013262          252 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEK  331 (447)
Q Consensus       252 ~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~  331 (447)
                      ..+++++|.+  +++++++++++.++++.|.+++++.+||+|++           ++++|+|+++|++..+.... ..  
T Consensus       155 ~~~v~~~m~~--~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~-----------~~~~Givt~~dl~~~~~~~~-~~--  218 (296)
T 3ddj_A          155 IFPVKVFMST--KVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDD-----------NKVVGIVTVVNAIKQLAKAV-DK--  218 (296)
T ss_dssp             CCBHHHHSBC--SCCCEETTSBHHHHHHHHHHHTCSEEEEECTT-----------SCEEEEEEHHHHHHHHHHHH-HH--
T ss_pred             cccHHHhhcC--CCeEECCCCCHHHHHHHHHHcCCCEEEEEcCC-----------CEEEEEEEHHHHHHHHHHHH-hh--
Confidence            4589999998  89999999999999999999999999999976           89999999999988765321 00  


Q ss_pred             ccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCccc
Q 013262          332 RRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEA  411 (447)
Q Consensus       332 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~  411 (447)
                                 +..                  +.....++.++|+++++++.+++++.+|+++|.+.+.+++||+|+   
T Consensus       219 -----------~~~------------------~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~---  266 (296)
T 3ddj_A          219 -----------LDP------------------DYFYGKVVKDVMVTNLVTIDELASVNRAAAEMIVKRIGSLLILNK---  266 (296)
T ss_dssp             -----------TCT------------------HHHHTCBHHHHSBCCCCBCCTTSBHHHHHHHHHHHTCSEEEEECT---
T ss_pred             -----------cCh------------------hhhcCcCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEECC---
Confidence                       000                  001224567788899999999999999999999999999999997   


Q ss_pred             CCCCcEEEEEeHHHHHHHHHhhhcCc
Q 013262          412 AGVSPVVGILTRQDLRAFNILTAFPH  437 (447)
Q Consensus       412 ~g~~~lvGIITr~DLl~~~~~~~~~~  437 (447)
                        +|+++|+||++|+++++.++...+
T Consensus       267 --~g~~~Giit~~Dil~~l~~~~~~~  290 (296)
T 3ddj_A          267 --DNTIRGIITERDLLIALHHILVME  290 (296)
T ss_dssp             --TSCEEEEEEHHHHHHHHHHHHHHH
T ss_pred             --CCeEEEEEcHHHHHHHHHHHhcch
Confidence              578999999999999988765433

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=99.61  E-value=3.6e-15  Score=144.20  Aligned_cols=127  Identities=20%  Similarity=0.208  Sum_probs=104.5

Q ss_pred             ccccccccccCCCCeeEecCCCCHHHHHHHHhcC-----CCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhh
Q 013262          251 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNT-----THNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKK  325 (447)
Q Consensus       251 ~~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~-----~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~  325 (447)
                      ...+|+++|++  +++++++++++.++++.++++     +++.+||+|++           ++++|+|+.+|++..  . 
T Consensus       133 ~~~~v~~iM~~--~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~~-----------~~lvGivt~~dll~~--~-  196 (278)
T 2yvy_A          133 EEDEAGGLMTP--EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEK-----------GRLKGVLSLRDLIVA--D-  196 (278)
T ss_dssp             CTTBGGGTCBS--CCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECTT-----------CBEEEEEEHHHHHHS--C-
T ss_pred             CcchHHhhcCC--CceEECCCCcHHHHHHHHHHccCCccceeEEEEECCC-----------CCEEEEEEHHHHhcC--C-
Confidence            35689999999  999999999999999999886     67999999986           899999999998641  0 


Q ss_pred             hhhhhcccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEE
Q 013262          326 WFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLV  405 (447)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpV  405 (447)
                                                               ...+++++|++++++|++++++.+|+++|.+.+.+.+||
T Consensus       197 -----------------------------------------~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpV  235 (278)
T 2yvy_A          197 -----------------------------------------PRTRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPV  235 (278)
T ss_dssp             -----------------------------------------TTCBSTTTSBSSCCCEETTSBHHHHHHHHHHHTCSEEEE
T ss_pred             -----------------------------------------CCCcHHHHhCCCCeEEeCCCCHHHHHHHHHhcCCCEEEE
Confidence                                                     013577889899999999999999999999999999999


Q ss_pred             EeCcccCCCCcEEEEEeHHHHHHHHHhhhcCccc
Q 013262          406 VPKYEAAGVSPVVGILTRQDLRAFNILTAFPHLE  439 (447)
Q Consensus       406 Vd~~~~~g~~~lvGIITr~DLl~~~~~~~~~~~~  439 (447)
                      ||+     +|+++|+||++|+++.+.++..+...
T Consensus       236 vd~-----~g~lvGivT~~Dil~~i~~e~~ed~~  264 (278)
T 2yvy_A          236 VDE-----EGRLVGIVTVDDVLDVLEAEATEDIH  264 (278)
T ss_dssp             ECT-----TSBEEEEEEHHHHHHHC---------
T ss_pred             EeC-----CCeEEEEEEHHHHHHHHHHHhHHHHH
Confidence            997     57899999999999988776554443

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=99.59  E-value=6.8e-15  Score=144.60  Aligned_cols=127  Identities=17%  Similarity=0.284  Sum_probs=106.4

Q ss_pred             ccccccc---ccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhh
Q 013262          252 TLTVGEL---IDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFL  328 (447)
Q Consensus       252 ~l~v~di---M~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~  328 (447)
                      ..+++++   |.+  +++++++++++.++.+.|.+++++.+||+|++           |+++|+|+++|+++++......
T Consensus       186 ~~~v~~~~~~m~~--~~~~v~~~~~~~~~~~~m~~~~~~~~pVvd~~-----------~~~~Giit~~dl~~~~~~~~~~  252 (323)
T 3t4n_C          186 KIPIGDLNIITQD--NMKSCQMTTPVIDVIQMLTQGRVSSVPIIDEN-----------GYLINVYEAYDVLGLIKGGIYN  252 (323)
T ss_dssp             CSBGGGTTCSBCT--TCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-----------CBEEEEEETTHHHHHHHTTHHH
T ss_pred             hCcHHHcCCCCCC--CcEEECCCCcHHHHHHHHHHcCCCEEEEECCC-----------CeEEEEEeHHHHHHHHhhchhh
Confidence            4578999   887  89999999999999999999999999999987           8999999999999876542110


Q ss_pred             hhcccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccC------CCceecCCCCHHHHHHHHHHcCCCE
Q 013262          329 QEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNT------TPYTVIESMSVAKAMVLFRQVGLRH  402 (447)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~------~p~tV~~~~sL~~a~~lf~~~gl~~  402 (447)
                      .                                     ...+++++|++      +++++++++++.+++++|.+.+.++
T Consensus       253 ~-------------------------------------~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~  295 (323)
T 3t4n_C          253 D-------------------------------------LSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHR  295 (323)
T ss_dssp             H-------------------------------------TTSBHHHHGGGSCTTCCCCEEECTTCBHHHHHHHHHHSCCCE
T ss_pred             h-------------------------------------ccCCHHHHHhhccccCCCCEEECCCCCHHHHHHHHHHhCCCE
Confidence            0                                     01223344544      6889999999999999999999999


Q ss_pred             EEEEeCcccCCCCcEEEEEeHHHHHHHHHhh
Q 013262          403 LLVVPKYEAAGVSPVVGILTRQDLRAFNILT  433 (447)
Q Consensus       403 LpVVd~~~~~g~~~lvGIITr~DLl~~~~~~  433 (447)
                      +||+|+     +|+++|+||++|+++++..+
T Consensus       296 l~Vvd~-----~~~l~Giit~~Dil~~l~~~  321 (323)
T 3t4n_C          296 FFVVDD-----VGRLVGVLTLSDILKYILLG  321 (323)
T ss_dssp             EEEECT-----TSBEEEEEEHHHHHHHHHHC
T ss_pred             EEEECC-----CCcEEEEEEHHHHHHHHHhc
Confidence            999997     57899999999999988753

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.56  E-value=5.8e-15  Score=141.92  Aligned_cols=149  Identities=14%  Similarity=0.125  Sum_probs=106.1

Q ss_pred             cccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHH------HHHHhh
Q 013262          252 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLV------LALKKK  325 (447)
Q Consensus       252 ~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~------~~L~~~  325 (447)
                      ..+++++|.+  +++++++++++.++.+.|.+++++.+||+|++           ++++|+|+.+|++      +.+...
T Consensus       125 ~~~v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~-----------~~~~Giit~~dl~~~~~~~~~~~~~  191 (282)
T 2yzq_A          125 GVEIEPYYQR--YVSIVWEGTPLKAALKALLLSNSMALPVVDSE-----------GNLVGIVDETDLLRDSEIVRIMKST  191 (282)
T ss_dssp             GCBSTTTSBS--CCCCEETTSBHHHHHHHHHTCSSSEEEEECTT-----------SCEEEEEEGGGGGGCGGGCC-----
T ss_pred             cCcHHHHhCC--CCEEECCCCCHHHHHHHHHHcCCcEEEEEcCC-----------CeEEEEEEHHHHhhhhhhhhhhccc
Confidence            5678999988  88999999999999999999999999999976           8999999999997      322100


Q ss_pred             hhhhhcccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEE
Q 013262          326 WFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLV  405 (447)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpV  405 (447)
                      .....+.  .. ... .....++..          .........+++++|+++++++++++++.+|+++|.+.+++++||
T Consensus       192 ~~~~~~~--~~-~~~-~~~~~~~~~----------~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpV  257 (282)
T 2yzq_A          192 ELAASSE--EE-WIL-ESHPTLLFE----------KFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPV  257 (282)
T ss_dssp             -----------------------------------------CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEE
T ss_pred             hhhhhhh--hh-hhc-ccchHHHHh----------HhhhhhccCCHHHhcCCCCceeCCCCCHHHHHHHHHHcCcceeEE
Confidence            0000000  00 000 000000000          000011245688999999999999999999999999999999999


Q ss_pred             EeCcccCCCCcEEEEEeHHHHHHHHHh
Q 013262          406 VPKYEAAGVSPVVGILTRQDLRAFNIL  432 (447)
Q Consensus       406 Vd~~~~~g~~~lvGIITr~DLl~~~~~  432 (447)
                      +|+     +|+++|+||++|+++++.+
T Consensus       258 vd~-----~~~lvGiit~~Dil~~~~~  279 (282)
T 2yzq_A          258 IRG-----EGDLIGLIRDFDLLKVLVK  279 (282)
T ss_dssp             EET-----TTEEEEEEEHHHHGGGGCC
T ss_pred             ECC-----CCCEEEEEeHHHHHHHHHh
Confidence            997     5689999999999987654

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.56  E-value=9.8e-15  Score=139.92  Aligned_cols=132  Identities=16%  Similarity=0.239  Sum_probs=106.4

Q ss_pred             ccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcc
Q 013262          253 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKR  332 (447)
Q Consensus       253 l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~  332 (447)
                      .+++++|.+  ++.++++++++.++++.|.+++++.+||+ ++           ++++|+|+.+|+++.+...+..... 
T Consensus       148 ~~v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv-~~-----------~~~~Givt~~dl~~~~~~~~~~~~~-  212 (280)
T 3kh5_A          148 EVIDDYITR--DVIVATPGERLKDVARTMVRNGFRRLPVV-SE-----------GRLVGIITSTDFIKLLGSDWAFNHM-  212 (280)
T ss_dssp             CBSGGGCBC--SCCCBCTTCBHHHHHHHHHHHTCSEEEEE-ET-----------TEEEEEEEHHHHHHHHTSHHHHHHH-
T ss_pred             CCHHHHhCC--CCeEECCCCcHHHHHHHHHHcCCCEEEEE-EC-----------CEEEEEEEHHHHHHHHhhhhhhhhh-
Confidence            478999998  88999999999999999999999999999 44           8999999999998876542211000 


Q ss_pred             cchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccC
Q 013262          333 RTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAA  412 (447)
Q Consensus       333 ~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~  412 (447)
                              .....                  ......+++++|.++++++++++++.+|+++|.+.+.+++||+|+    
T Consensus       213 --------~~~~~------------------~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~----  262 (280)
T 3kh5_A          213 --------QTGNV------------------REITNVRMEEIMKRDVITAKEGDKLKKIAEIMVTNDIGALPVVDE----  262 (280)
T ss_dssp             --------HSCCT------------------HHHHHCBHHHHSBSSCCCBCTTCBHHHHHHHHHHHTCCEEEEECT----
T ss_pred             --------cccch------------------hhhhCCcHHHHhcCCCEEECCCCCHHHHHHHHHHCCCCEEEEECC----
Confidence                    00000                  001224577888899999999999999999999999999999997    


Q ss_pred             CCCcEEEEEeHHHHHHHH
Q 013262          413 GVSPVVGILTRQDLRAFN  430 (447)
Q Consensus       413 g~~~lvGIITr~DLl~~~  430 (447)
                       +|+++|+||++|+++++
T Consensus       263 -~g~~~Givt~~dil~~l  279 (280)
T 3kh5_A          263 -NLRIKGIITEKDVLKYF  279 (280)
T ss_dssp             -TCBEEEEEEHHHHGGGG
T ss_pred             -CCeEEEEEeHHHHHHhh
Confidence             56899999999998764

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.53  E-value=2.5e-14  Score=138.78  Aligned_cols=122  Identities=17%  Similarity=0.240  Sum_probs=105.7

Q ss_pred             cccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhc
Q 013262          252 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEK  331 (447)
Q Consensus       252 ~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~  331 (447)
                      +.+++++|.+  +++++++++++.++++.|.+++++.+||+|++           ++++|+|+.+|+...+....     
T Consensus        92 ~~~v~~im~~--~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~-----------~~lvGivt~~dl~~~~~~~~-----  153 (296)
T 3ddj_A           92 TTPIIDYMTP--NPVTVYNTSDEFTAINIMVTRNFGSLPVVDIN-----------DKPVGIVTEREFLLLYKDLD-----  153 (296)
T ss_dssp             TSBGGGTSEE--SCCCEETTSCHHHHHHHHHHHTCSEEEEECTT-----------SCEEEEEEHHHHGGGGGGSC-----
T ss_pred             cccHHHhccC--CCEEEcCCCCHHHHHHHHHHcCCCEEEEEcCC-----------CcEEEEEeHHHHHHhhhccc-----
Confidence            5679999999  89999999999999999999999999999886           89999999999965432110     


Q ss_pred             ccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCccc
Q 013262          332 RRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEA  411 (447)
Q Consensus       332 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~  411 (447)
                                                         ....++++|.+++.++.+++++.+++++|.+.+.+++||+|+   
T Consensus       154 -----------------------------------~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~---  195 (296)
T 3ddj_A          154 -----------------------------------EIFPVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDD---  195 (296)
T ss_dssp             -----------------------------------CCCBHHHHSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECT---
T ss_pred             -----------------------------------ccccHHHhhcCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcC---
Confidence                                               012456678888999999999999999999999999999997   


Q ss_pred             CCCCcEEEEEeHHHHHHHHH
Q 013262          412 AGVSPVVGILTRQDLRAFNI  431 (447)
Q Consensus       412 ~g~~~lvGIITr~DLl~~~~  431 (447)
                        +|+++|+||++|++++..
T Consensus       196 --~~~~~Givt~~dl~~~~~  213 (296)
T 3ddj_A          196 --DNKVVGIVTVVNAIKQLA  213 (296)
T ss_dssp             --TSCEEEEEEHHHHHHHHH
T ss_pred             --CCEEEEEEEHHHHHHHHH
Confidence              568999999999998876

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.53  E-value=8.2e-14  Score=133.45  Aligned_cols=122  Identities=20%  Similarity=0.254  Sum_probs=106.1

Q ss_pred             cccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhc
Q 013262          252 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEK  331 (447)
Q Consensus       252 ~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~  331 (447)
                      +.+++++|.+  +++++++++++.++++.|.+++++.+||+|++           ++++|+++.+|+.+.+.....    
T Consensus        83 ~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-----------~~~~Givt~~dl~~~~~~~~~----  145 (280)
T 3kh5_A           83 NEPVREIMEE--NVITLKENADIDEAIETFLTKNVGGAPIVNDE-----------NQLISLITERDVIRALLDKID----  145 (280)
T ss_dssp             TSBGGGTSBC--SCCCEETTCBHHHHHHHHHHTTCSEEEEECTT-----------CBEEEEEEHHHHHHHHGGGSC----
T ss_pred             hhhHHHhcCC--CCEEECCCCCHHHHHHHHHhCCCCEEEEEcCC-----------CEEEEEEEHHHHHHHHhhcCC----
Confidence            4689999998  89999999999999999999999999999887           899999999999876543110    


Q ss_pred             ccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCccc
Q 013262          332 RRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEA  411 (447)
Q Consensus       332 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~  411 (447)
                                                         ...+++++|.+++.++++++++.++++.|.+.+.+++||++    
T Consensus       146 -----------------------------------~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~----  186 (280)
T 3kh5_A          146 -----------------------------------ENEVIDDYITRDVIVATPGERLKDVARTMVRNGFRRLPVVS----  186 (280)
T ss_dssp             -----------------------------------TTCBSGGGCBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE----
T ss_pred             -----------------------------------CCCCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEE----
Confidence                                               11246678888999999999999999999999999999995    


Q ss_pred             CCCCcEEEEEeHHHHHHHHH
Q 013262          412 AGVSPVVGILTRQDLRAFNI  431 (447)
Q Consensus       412 ~g~~~lvGIITr~DLl~~~~  431 (447)
                        +|+++|+||++|++++..
T Consensus       187 --~~~~~Givt~~dl~~~~~  204 (280)
T 3kh5_A          187 --EGRLVGIITSTDFIKLLG  204 (280)
T ss_dssp             --TTEEEEEEEHHHHHHHHT
T ss_pred             --CCEEEEEEEHHHHHHHHh
Confidence              467999999999998864

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=99.52  E-value=6.1e-14  Score=145.51  Aligned_cols=122  Identities=20%  Similarity=0.214  Sum_probs=106.2

Q ss_pred             ccccccccccCCCCeeEecCCCCHHHHHHHHhcC-----CCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhh
Q 013262          251 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNT-----THNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKK  325 (447)
Q Consensus       251 ~~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~-----~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~  325 (447)
                      ...+|+++|++  ++++++++++++++.+.++++     +++.+||+|++           ++++|+|+.+|++..  . 
T Consensus       153 ~~~~v~~iM~~--~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~~-----------~~lvGiVt~~Dll~~--~-  216 (473)
T 2zy9_A          153 EEDEAGGLMTP--EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEK-----------GRLKGVLSLRDLIVA--D-  216 (473)
T ss_dssp             CTTBSTTTCBS--CEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECTT-----------SBEEEEEEHHHHHHS--C-
T ss_pred             CCCCHHHhCCC--CceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECCC-----------CcEEEEEEHHHHhcC--C-
Confidence            35689999999  999999999999999999876     46899999986           899999999998641  0 


Q ss_pred             hhhhhcccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEE
Q 013262          326 WFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLV  405 (447)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpV  405 (447)
                                                               ...+++++|++++++++++++++++.++|++++.+.+||
T Consensus       217 -----------------------------------------~~~~v~dim~~~~~~v~~~~~l~ea~~~m~~~~~~~lpV  255 (473)
T 2zy9_A          217 -----------------------------------------PRTRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPV  255 (473)
T ss_dssp             -----------------------------------------TTSBGGGTSBSSCCCEESSSBHHHHHHHHHHHTCSEEEE
T ss_pred             -----------------------------------------CCCcHHHHhCCCCeEEeCCCcHHHHHHHHHhcCCcEEEE
Confidence                                                     013477889899999999999999999999999999999


Q ss_pred             EeCcccCCCCcEEEEEeHHHHHHHHHhhh
Q 013262          406 VPKYEAAGVSPVVGILTRQDLRAFNILTA  434 (447)
Q Consensus       406 Vd~~~~~g~~~lvGIITr~DLl~~~~~~~  434 (447)
                      ||+     +|+++|+||++|+++...++.
T Consensus       256 VDe-----~g~lvGiIT~~Dil~~i~~e~  279 (473)
T 2zy9_A          256 VDE-----EGRLVGIVTVDDVLDVLEAEA  279 (473)
T ss_dssp             ECT-----TSBEEEEEEHHHHHHHHHHHH
T ss_pred             EcC-----CCEEEEEEehHhhHHHHHHHh
Confidence            997     578999999999999876643

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.52  E-value=7.1e-14  Score=137.92  Aligned_cols=128  Identities=13%  Similarity=0.146  Sum_probs=105.4

Q ss_pred             cccccc---cccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhh
Q 013262          252 TLTVGE---LIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFL  328 (447)
Q Consensus       252 ~l~v~d---iM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~  328 (447)
                      ..++++   +|.+  ++.++++++++.++.+.|.+++++.+||+|++           ++++|+|+++|++..+....+.
T Consensus       181 ~~~v~~l~~~m~~--~~~~v~~~~~~~~~~~~m~~~~~~~~~Vvd~~-----------~~~~Giit~~dl~~~~~~~~~~  247 (334)
T 2qrd_G          181 RVPLNQMTIGTWS--NLATASMETKVYDVIKMLAEKNISAVPIVNSE-----------GTLLNVYESVDVMHLIQDGDYS  247 (334)
T ss_dssp             CCBGGGSSCSBCS--SCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-----------CBEEEEEETHHHHHHHTTSCGG
T ss_pred             hCcHHHhCCcccC--CceEECCCCcHHHHHHHHHHcCCcEEEEEcCC-----------CcEEEEEEHHHHHHHhhccccc
Confidence            456788   5888  88999999999999999999999999999976           8999999999998766432100


Q ss_pred             hhcccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCcccccc------CCCceecCCCCHHHHHHHHHHcCCCE
Q 013262          329 QEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTN------TTPYTVIESMSVAKAMVLFRQVGLRH  402 (447)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~------~~p~tV~~~~sL~~a~~lf~~~gl~~  402 (447)
                      .                                     ...++.++|.      ++++++++++++.+|+++|.+.+.++
T Consensus       248 ~-------------------------------------~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~  290 (334)
T 2qrd_G          248 N-------------------------------------LDLSVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHR  290 (334)
T ss_dssp             G-------------------------------------GGSBHHHHHTTCCTTCCCCCEECTTCBHHHHHHHHHHSCCCE
T ss_pred             c-------------------------------------ccCcHHHHHhcccccCCCCEEECCCCcHHHHHHHHHHcCCCE
Confidence            0                                     0112344555      47889999999999999999999999


Q ss_pred             EEEEeCcccCCCCcEEEEEeHHHHHHHHHhhh
Q 013262          403 LLVVPKYEAAGVSPVVGILTRQDLRAFNILTA  434 (447)
Q Consensus       403 LpVVd~~~~~g~~~lvGIITr~DLl~~~~~~~  434 (447)
                      +||+|+     +|+++|+||++|+++++.++.
T Consensus       291 l~Vvd~-----~g~l~Giit~~dil~~~~~~~  317 (334)
T 2qrd_G          291 LFVVDE-----NLKLEGILSLADILNYIIYDK  317 (334)
T ss_dssp             EEEECT-----TCBEEEEEEHHHHHHHHHSCC
T ss_pred             EEEECC-----CCeEEEEEeHHHHHHHHHhcc
Confidence            999997     578999999999999887654

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.47  E-value=4.5e-14  Score=135.66  Aligned_cols=117  Identities=21%  Similarity=0.278  Sum_probs=87.1

Q ss_pred             ccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcc
Q 013262          253 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKR  332 (447)
Q Consensus       253 l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~  332 (447)
                      ++|+|+|.+  +++++++++++.++++.|.+++++.+||+|++           ++++|+|+.+|++..+.         
T Consensus         1 m~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~pV~d~~-----------~~~~Giv~~~dl~~~~~---------   58 (282)
T 2yzq_A            1 MRVKTIMTQ--NPVTITLPATRNYALELFKKYKVRSFPVVNKE-----------GKLVGIISVKRILVNPD---------   58 (282)
T ss_dssp             CBHHHHSEE--SCCCEESSCC------------CCEEEEECTT-----------CCEEEEEESSCC--------------
T ss_pred             CchHHhccC--CCeEECCCCcHHHHHHHHHHcCCCeEEEEcCC-----------CcEEEEEEHHHHHhhhc---------
Confidence            478999998  89999999999999999999999999999976           89999999999864321         


Q ss_pred             cchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccC
Q 013262          333 RTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAA  412 (447)
Q Consensus       333 ~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~  412 (447)
                                                         ...++++|.+.+.++++++++.++++.|.+.+.+.+||+|+    
T Consensus        59 -----------------------------------~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~----   99 (282)
T 2yzq_A           59 -----------------------------------EEQLAMLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDS----   99 (282)
T ss_dssp             ----------------------------------------CCCBSCCCEEETTSBHHHHHHHHHHHTCSEEEEECT----
T ss_pred             -----------------------------------cCCHHHHcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcC----
Confidence                                               02356778888899999999999999999999999999987    


Q ss_pred             CCCcEEEEEeHHHHHH-HHH
Q 013262          413 GVSPVVGILTRQDLRA-FNI  431 (447)
Q Consensus       413 g~~~lvGIITr~DLl~-~~~  431 (447)
                       +|+++|+||++|+++ ++.
T Consensus       100 -~~~~~Giit~~di~~~~~~  118 (282)
T 2yzq_A          100 -KGKPVGILTVGDIIRRYFA  118 (282)
T ss_dssp             -TSCEEEEEEHHHHHHHTTT
T ss_pred             -CCEEEEEEEHHHHHHHHHh
Confidence             467999999999998 554

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.46  E-value=6.9e-13  Score=130.70  Aligned_cols=147  Identities=14%  Similarity=0.111  Sum_probs=109.8

Q ss_pred             cccccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhh
Q 013262          250 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ  329 (447)
Q Consensus       250 l~~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~  329 (447)
                      +.+.+|+|+|.+..+++++++++++.++++.|.+++++.+||++++          .++++|+|+.+|++..+.......
T Consensus        32 l~~~~v~dim~p~~~v~~v~~~~~v~~a~~~~~~~~~~~~pV~d~~----------~~~~vGivt~~Dll~~l~~~~~~~  101 (330)
T 2v8q_E           32 MKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSK----------KQSFVGMLTITDFINILHRYYKSA  101 (330)
T ss_dssp             HHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETT----------TTEEEEEEEHHHHHHHHHHHHHHH
T ss_pred             HHcCcHhhhccCCCcEEEEeCCCcHHHHHHHHHHcCCcEEEEEeCC----------CCeEEEEEEHHHHHHHHHHHHhcc
Confidence            5678999999432289999999999999999999999999999875          168999999999988664311000


Q ss_pred             hcccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCc
Q 013262          330 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKY  409 (447)
Q Consensus       330 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~  409 (447)
                      +..   ... .......++.                   -.+.++|.++++++++++++.+++++|.+.+.+++||+|+ 
T Consensus       102 ~~~---~~~-l~~~~~~~~~-------------------~~~~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-  157 (330)
T 2v8q_E          102 LVQ---IYE-LEEHKIETWR-------------------EVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDP-  157 (330)
T ss_dssp             TTT---CCC-GGGCBHHHHH-------------------HHHSSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECT-
T ss_pred             ccc---hhH-HhhccHHHHH-------------------HHHhhcccCCceEeCCCCCHHHHHHHHHHCCCCeEEEEeC-
Confidence            000   000 0001111111                   1245678899999999999999999999999999999984 


Q ss_pred             ccCCCCcEEEEEeHHHHHHHHHhh
Q 013262          410 EAAGVSPVVGILTRQDLRAFNILT  433 (447)
Q Consensus       410 ~~~g~~~lvGIITr~DLl~~~~~~  433 (447)
                         ++|+++|+||.+|++++....
T Consensus       158 ---~~~~~~Givt~~dl~~~~~~~  178 (330)
T 2v8q_E          158 ---ESGNTLYILTHKRILKFLKLF  178 (330)
T ss_dssp             ---TTCCEEEEECHHHHHHHHHHH
T ss_pred             ---CCCcEEEEEcHHHHHHHHHHH
Confidence               136799999999999887543

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=99.41  E-value=6.5e-13  Score=138.78  Aligned_cols=118  Identities=14%  Similarity=0.211  Sum_probs=101.7

Q ss_pred             cccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecC--CCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhc
Q 013262          254 TVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDE--GVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEK  331 (447)
Q Consensus       254 ~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~--~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~  331 (447)
                      +++++|.+  +++++++++++.+++++|.+++++++||+|+  +           ++++|+|+.+||..   .    .+ 
T Consensus       114 ~~~~~m~~--d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g~~-----------~~lvGiVt~rDl~~---~----~~-  172 (511)
T 3usb_A          114 RSESGVIS--DPFFLTPEHQVYDAEHLMGKYRISGVPVVNNLDE-----------RKLVGIITNRDMRF---I----QD-  172 (511)
T ss_dssp             TSSSCSSS--SCCCBCTTSBHHHHHHHHHHHCCSEEEEESCTTT-----------CBEEEEEEHHHHTT---C----CC-
T ss_pred             cccccccc--CCEEECCCCCHHHHHHHHHHcCCcEEEEEecCCC-----------CEEEEEEEehHhhh---h----cc-
Confidence            45677888  8899999999999999999999999999997  5           89999999999942   0    00 


Q ss_pred             ccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccC-CCceecCCCCHHHHHHHHHHcCCCEEEEEeCcc
Q 013262          332 RRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNT-TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYE  410 (447)
Q Consensus       332 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~-~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~  410 (447)
                                                         ...+++++|++ +++++++++++.+++++|.+.+.+.+||||+  
T Consensus       173 -----------------------------------~~~~V~~vM~~~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe--  215 (511)
T 3usb_A          173 -----------------------------------YSIKISDVMTKEQLITAPVGTTLSEAEKILQKYKIEKLPLVDN--  215 (511)
T ss_dssp             -----------------------------------SSSBHHHHCCCCCCCCEETTCCHHHHHHHHHHHTCSEEEEECT--
T ss_pred             -----------------------------------CCCcHHHhcccCCCEEECCCCCHHHHHHHHHHcCCCEEEEEeC--
Confidence                                               11345667877 8899999999999999999999999999998  


Q ss_pred             cCCCCcEEEEEeHHHHHHHHHh
Q 013262          411 AAGVSPVVGILTRQDLRAFNIL  432 (447)
Q Consensus       411 ~~g~~~lvGIITr~DLl~~~~~  432 (447)
                         +|+++|+||++|+++....
T Consensus       216 ---~g~l~GiIT~~Dil~~~~~  234 (511)
T 3usb_A          216 ---NGVLQGLITIKDIEKVIEF  234 (511)
T ss_dssp             ---TSBEEEEEEHHHHHHHHHC
T ss_pred             ---CCCEeeeccHHHHHHhhhc
Confidence               5789999999999998764

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.40  E-value=3.8e-13  Score=132.57  Aligned_cols=132  Identities=14%  Similarity=0.136  Sum_probs=101.9

Q ss_pred             cccccc--cc-CCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhh
Q 013262          253 LTVGEL--ID-AKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ  329 (447)
Q Consensus       253 l~v~di--M~-~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~  329 (447)
                      .+++++  |. +  ++.++++++++.++.+.|.+++++.+||+|++           ++++|+|+++|++..+....+..
T Consensus       190 ~~v~~~~v~~~~--~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~-----------~~l~Giit~~dl~~~~~~~~~~~  256 (330)
T 2v8q_E          190 KSLEELQIGTYA--NIAMVRTTTPVYVALGIFVQHRVSALPVVDEK-----------GRVVDIYSKFDVINLAAEKTYNN  256 (330)
T ss_dssp             SBHHHHTCSBCS--SCCCEETTCBHHHHHHHHHHHCCSEEEEECTT-----------SBEEEEEEGGGTGGGGGSSCCCC
T ss_pred             CCHHHhcccCcC--CceEECCCCCHHHHHHHHHHcCCCeEEEECCC-----------CcEEEEEEHHHHHHHHhcccccc
Confidence            345555  54 5  78899999999999999999999999999976           89999999999976443211000


Q ss_pred             hcccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCc
Q 013262          330 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKY  409 (447)
Q Consensus       330 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~  409 (447)
                                 ...++.+++.                    .+..|.++++++++++++.+++++|.+.+.+++||+|+ 
T Consensus       257 -----------~~~~v~~~~~--------------------~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~-  304 (330)
T 2v8q_E          257 -----------LDVSVTKALQ--------------------HRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDE-  304 (330)
T ss_dssp             -----------CSSBHHHHGG--------------------GCCSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECT-
T ss_pred             -----------ccCcHHHHHh--------------------ccccccCCCeEECCCCcHHHHHHHHHHCCCcEEEEEcC-
Confidence                       0012222221                    12234688999999999999999999999999999997 


Q ss_pred             ccCCCCcEEEEEeHHHHHHHHHhh
Q 013262          410 EAAGVSPVVGILTRQDLRAFNILT  433 (447)
Q Consensus       410 ~~~g~~~lvGIITr~DLl~~~~~~  433 (447)
                          +|+++|+||++|+++++.+.
T Consensus       305 ----~g~l~Giit~~Dil~~~~~~  324 (330)
T 2v8q_E          305 ----HDVVKGIVSLSDILQALVLT  324 (330)
T ss_dssp             ----TSBEEEEEEHHHHHHHHHSS
T ss_pred             ----CCcEEEEEeHHHHHHHHHhh
Confidence                57899999999999987654

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=99.40  E-value=1.5e-12  Score=127.75  Aligned_cols=130  Identities=6%  Similarity=0.037  Sum_probs=100.3

Q ss_pred             cccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCc--eEEEEEeHHHHHHHHHhhhhhhhc
Q 013262          254 TVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVAT--ELHGLILRAHLVLALKKKWFLQEK  331 (447)
Q Consensus       254 ~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~--~lvGiIt~~dL~~~L~~~~~~~~~  331 (447)
                      ++.++|.+  +++++++++++.++++.|.+++++.+||+|++.        .++  +++|+|+.+|+++.+....-..  
T Consensus       115 ~~~~~~~~--~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~--------~~~~~~l~Givt~~di~~~l~~~~~~~--  182 (323)
T 3t4n_C          115 RALGVDQL--DTASIHPSRPLFEACLKMLESRSGRIPLIDQDE--------ETHREIVVSVLTQYRILKFVALNCRET--  182 (323)
T ss_dssp             HHTTC------CCCBCTTSBHHHHHHHHHHHTCSEEEEEEECT--------TTCCEEEEEEEEHHHHHHHHHHHCGGG--
T ss_pred             HHhCCCCC--CceEeCCCCcHHHHHHHHHhCCeeEEEEEecCC--------CCCccceEEEecHHHHHHHHHhcCCch--
Confidence            35566777  889999999999999999999999999999861        111  3999999999988664311000  


Q ss_pred             ccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCcccc---ccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeC
Q 013262          332 RRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPL---TNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPK  408 (447)
Q Consensus       332 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~i---m~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~  408 (447)
                                     .                  .....++++   |.++++++.+++++.+|.++|.+.+.+++||+|+
T Consensus       183 ---------------~------------------~~~~~v~~~~~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~pVvd~  229 (323)
T 3t4n_C          183 ---------------H------------------FLKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDE  229 (323)
T ss_dssp             ---------------G------------------GCCSBGGGTTCSBCTTCCCBCTTSBHHHHHHHHHHHTCSEEEEECT
T ss_pred             ---------------h------------------hhhCcHHHcCCCCCCCcEEECCCCcHHHHHHHHHHcCCCEEEEECC
Confidence                           0                  011235556   8889999999999999999999999999999987


Q ss_pred             cccCCCCcEEEEEeHHHHHHHHHhh
Q 013262          409 YEAAGVSPVVGILTRQDLRAFNILT  433 (447)
Q Consensus       409 ~~~~g~~~lvGIITr~DLl~~~~~~  433 (447)
                           +|+++|+||++|++++....
T Consensus       230 -----~~~~~Giit~~dl~~~~~~~  249 (323)
T 3t4n_C          230 -----NGYLINVYEAYDVLGLIKGG  249 (323)
T ss_dssp             -----TCBEEEEEETTHHHHHHHTT
T ss_pred             -----CCeEEEEEeHHHHHHHHhhc
Confidence                 57899999999999876643

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.40  E-value=1.7e-12  Score=128.02  Aligned_cols=148  Identities=19%  Similarity=0.218  Sum_probs=107.0

Q ss_pred             cccccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhh
Q 013262          250 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ  329 (447)
Q Consensus       250 l~~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~  329 (447)
                      ++..+|+|+|.++.+++++++++++.++++.|.+++++.+||++++          .++++|+|+.+|++..+...+-..
T Consensus        19 l~~~~v~dim~~~~~vv~v~~~~tv~~a~~~~~~~~~~~~pV~d~~----------~~~~vGiv~~~Dl~~~~~~~~~~~   88 (334)
T 2qrd_G           19 IRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSE----------ANKFAGLLTMADFVNVIKYYYQSS   88 (334)
T ss_dssp             HHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETT----------TTEEEEEECHHHHHHHHHHHHHHC
T ss_pred             HhcCchhhhCCCCCCEEEEcCCCCHHHHHHHHHHcCCeEEEEEeCC----------CCeEEEEEEHHHHHHHHHHHhhcc
Confidence            4568999999875468899999999999999999999999999874          279999999999988664321000


Q ss_pred             hcccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCC--ceecCCCCHHHHHHHHHHcCCCEEEEEe
Q 013262          330 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTP--YTVIESMSVAKAMVLFRQVGLRHLLVVP  407 (447)
Q Consensus       330 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p--~tV~~~~sL~~a~~lf~~~gl~~LpVVd  407 (447)
                      ..  .............++.+                   -++++|.+++  +++.+++++.++++.|.+.+.+++||+|
T Consensus        89 ~~--~~~~~~~~~~~~~~i~~-------------------~l~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd  147 (334)
T 2qrd_G           89 SF--PEAIAEIDKFRLLGLRE-------------------VERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLID  147 (334)
T ss_dssp             SC--GGGGGGGGSCBHHHHHH-------------------HHHHHTCSCSSCCCBCTTSBHHHHHHHHHHSCCSEEEEEE
T ss_pred             CC--ccHHHHHhhhchhhHHH-------------------HHHhhccCCCceeeeCCCCcHHHHHHHHHHCCceEEEEEe
Confidence            00  00000000111111110                   0123566667  8999999999999999999999999998


Q ss_pred             CcccCCCCc----EEEEEeHHHHHHHHHh
Q 013262          408 KYEAAGVSP----VVGILTRQDLRAFNIL  432 (447)
Q Consensus       408 ~~~~~g~~~----lvGIITr~DLl~~~~~  432 (447)
                      +   +| ++    ++|+||.+|++++...
T Consensus       148 ~---~~-~~~~~~~~Givt~~dl~~~~~~  172 (334)
T 2qrd_G          148 V---DG-ETGSEMIVSVLTQYRILKFISM  172 (334)
T ss_dssp             E---ET-TTTEEEEEEEEEHHHHHHHHHH
T ss_pred             C---CC-CcCccceEEEeeHHHHHHHHHh
Confidence            7   22 34    9999999999987764

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=99.37  E-value=2.5e-12  Score=134.19  Aligned_cols=118  Identities=14%  Similarity=0.211  Sum_probs=103.4

Q ss_pred             cccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEec--CCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhc
Q 013262          254 TVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLD--EGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEK  331 (447)
Q Consensus       254 ~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd--~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~  331 (447)
                      +++++|.+  +++++++++++.++++.|.+++++.+||+|  ++           ++++|+|+.+||+..  .     + 
T Consensus        91 ~~~~im~~--~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~-----------~~lvGivt~~Dl~~~--~-----~-  149 (491)
T 1zfj_A           91 RSENGVII--DPFFLTPEHKVSEAEELMQRYRISGVPIVETLAN-----------RKLVGIITNRDMRFI--S-----D-  149 (491)
T ss_dssp             HHTTTTSS--SCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTT-----------CBEEEEEEHHHHHHC--S-----C-
T ss_pred             hHHhcCcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCCC-----------CEEEEEEEHHHHhhh--c-----c-
Confidence            35789998  899999999999999999999999999999  55           899999999999641  0     0 


Q ss_pred             ccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccC-CCceecCCCCHHHHHHHHHHcCCCEEEEEeCcc
Q 013262          332 RRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNT-TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYE  410 (447)
Q Consensus       332 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~-~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~  410 (447)
                                                         ...+++++|++ +++++++++++.+++++|.+.+.+.+||||+  
T Consensus       150 -----------------------------------~~~~v~~im~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~--  192 (491)
T 1zfj_A          150 -----------------------------------YNAPISEHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDN--  192 (491)
T ss_dssp             -----------------------------------SSSBTTTSCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEECT--
T ss_pred             -----------------------------------CCCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC--
Confidence                                               12357788988 8999999999999999999999999999997  


Q ss_pred             cCCCCcEEEEEeHHHHHHHHHh
Q 013262          411 AAGVSPVVGILTRQDLRAFNIL  432 (447)
Q Consensus       411 ~~g~~~lvGIITr~DLl~~~~~  432 (447)
                         +++++|+||++|+++...+
T Consensus       193 ---~g~lvGivt~~Dil~~~~~  211 (491)
T 1zfj_A          193 ---SGRLSGLITIKDIEKVIEF  211 (491)
T ss_dssp             ---TSBEEEEEEHHHHHHHHHC
T ss_pred             ---CCcEEEEEEHHHHHHHHhc
Confidence               5789999999999998764

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=99.35  E-value=2.9e-13  Score=140.96  Aligned_cols=118  Identities=17%  Similarity=0.266  Sum_probs=88.6

Q ss_pred             ccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcc
Q 013262          253 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKR  332 (447)
Q Consensus       253 l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~  332 (447)
                      .+++++|.+  +++++++++++.+++++|.+++++++||+|++           ++++|+|+.+||..       ..+  
T Consensus        89 k~~~~~m~~--d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~~-----------~~lvGiVt~rDL~~-------~~~--  146 (496)
T 4fxs_A           89 KIFEAGVVT--HPVTVRPEQTIADVMELTHYHGFAGFPVVTEN-----------NELVGIITGRDVRF-------VTD--  146 (496)
T ss_dssp             HHCCC--CB--CCCCBCSSSBHHHHHHHHTSSCCCEEEEECSS-----------SBEEEEEEHHHHTT-------CCC--
T ss_pred             ccccccccc--CceEECCCCCHHHHHHHHHHcCCcEEEEEccC-----------CEEEEEEEHHHHhh-------ccc--
Confidence            356788998  89999999999999999999999999999986           89999999999841       000  


Q ss_pred             cchhhhhhhcchHHHHhhhcccccccccchhhhhhccCcccccc-C-CCceecCCCCHHHHHHHHHHcCCCEEEEEeCcc
Q 013262          333 RTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTN-T-TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYE  410 (447)
Q Consensus       333 ~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~-~-~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~  410 (447)
                                                        ...+++++|+ + +++++++++++.+++++|.+++++.+||||+  
T Consensus       147 ----------------------------------~~~~v~diM~p~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe--  190 (496)
T 4fxs_A          147 ----------------------------------LTKSVAAVMTPKERLATVKEGATGAEVQEKMHKARVEKILVVND--  190 (496)
T ss_dssp             ----------------------------------TTSBGGGTSEEGGGCCEEECC----CGGGTCC---CCCEEEECT--
T ss_pred             ----------------------------------CCCcHHHHhcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC--
Confidence                                              1235777887 4 5899999999999999999999999999998  


Q ss_pred             cCCCCcEEEEEeHHHHHHHHH
Q 013262          411 AAGVSPVVGILTRQDLRAFNI  431 (447)
Q Consensus       411 ~~g~~~lvGIITr~DLl~~~~  431 (447)
                         +|+++|+||++|+++...
T Consensus       191 ---~G~l~GiIT~~DIl~~~~  208 (496)
T 4fxs_A          191 ---EFQLKGMITAKDFHKAES  208 (496)
T ss_dssp             ---TSBCCEEECCC-----CC
T ss_pred             ---CCCEEEeehHhHHHHhhc
Confidence               678999999999998643

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=99.29  E-value=3.1e-13  Score=140.53  Aligned_cols=117  Identities=17%  Similarity=0.225  Sum_probs=3.5

Q ss_pred             ccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcc
Q 013262          253 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKR  332 (447)
Q Consensus       253 l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~  332 (447)
                      .+++++|.+  +++++++++++.+++++|.+++++++||+| +           ++++|+|+.+||....       +  
T Consensus        88 k~~~~~m~~--~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd-~-----------g~lvGIVt~rDl~~~~-------~--  144 (490)
T 4avf_A           88 KKHETAIVR--DPVTVTPSTKIIELLQMAREYGFSGFPVVE-Q-----------GELVGIVTGRDLRVKP-------N--  144 (490)
T ss_dssp             HHCCC---------------------------------------------------------------------------
T ss_pred             cccccCccc--CceEeCCCCcHHHHHHHHHHhCCCEEEEEE-C-----------CEEEEEEEhHHhhhcc-------c--
Confidence            457889998  889999999999999999999999999999 5           8999999999984210       0  


Q ss_pred             cchhhhhhhcchHHHHhhhcccccccccchhhhhhccCcccccc-C-CCceecCCCCHHHHHHHHHHcCCCEEEEEeCcc
Q 013262          333 RTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTN-T-TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYE  410 (447)
Q Consensus       333 ~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~-~-~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~  410 (447)
                                                        ...+++++|. + +++++++++++.+++++|.+++++.+||||+  
T Consensus       145 ----------------------------------~~~~V~~vMtp~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe--  188 (490)
T 4avf_A          145 ----------------------------------AGDTVAAIMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVDE--  188 (490)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ----------------------------------cCCcHHHHhccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEcC--
Confidence                                              1134677887 4 6899999999999999999999999999997  


Q ss_pred             cCCCCcEEEEEeHHHHHHHHH
Q 013262          411 AAGVSPVVGILTRQDLRAFNI  431 (447)
Q Consensus       411 ~~g~~~lvGIITr~DLl~~~~  431 (447)
                         +++++|+||++|+++...
T Consensus       189 ---~g~lvGiIT~~Dil~~~~  206 (490)
T 4avf_A          189 ---NFYLRGLVTFRDIEKAKT  206 (490)
T ss_dssp             ---------------------
T ss_pred             ---CCcEEEEEehHHhhhhcc
Confidence               578999999999998754

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=99.29  E-value=2.4e-13  Score=141.99  Aligned_cols=177  Identities=17%  Similarity=0.178  Sum_probs=33.2

Q ss_pred             hhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhhcCCchHHHHHHhhCCCCCCCCC-C-c----ccccccccccccCCC
Q 013262          190 MTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILELKGLPFLDAHP-E-P----WMRTLTVGELIDAKP  263 (447)
Q Consensus       190 ~p~s~~vi~~E~t~~~~~~~p~~ia~~va~~v~~~l~~sIYd~~l~~kg~p~l~~~~-~-~----~l~~l~v~diM~~~~  263 (447)
                      .|. -+-+..|+|+++.+.+|++.+.+..     .....+.....+..|+.++.... . .    ...-.+++|+|.+  
T Consensus        32 ~p~-~v~~~~eLt~~~~l~iP~is~~m~~-----v~~~~lA~al~~~GglG~i~~~~~~e~~~~~v~~v~~~~~iM~~--  103 (494)
T 1vrd_A           32 LPK-DVKIDTRLTRQIRINIPLVSAAMDT-----VTEAALAKALAREGGIGIIHKNLTPDEQARQVSIVKKTENGIIY--  103 (494)
T ss_dssp             CGG-GSCCCEESSSSCEESSSEEECCCTT-----TCSHHHHHHHHTTTCEEEECSSSCHHHHHHHHHHHHTC--------
T ss_pred             CCC-ceEEEehhhCCCccCceeEecchHH-----HhHHHHHHHHHHcCCceEEecCCChHHHHHHHHhhhhHhhcCcc--
Confidence            344 4556778999999888875443211     11223333333433443222111 0 0    1112457899998  


Q ss_pred             CeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcc
Q 013262          264 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF  343 (447)
Q Consensus       264 ~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~  343 (447)
                      +++++++++++.++++.|.+++++.+||+|++           ++++|+|+.+|+...  .     +             
T Consensus       104 ~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~-----------~~lvGivt~~Dl~~~--~-----~-------------  152 (494)
T 1vrd_A          104 DPITVTPDMTVKEAIDLMAEYKIGGLPVVDEE-----------GRLVGLLTNRDVRFE--K-----N-------------  152 (494)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCeEECCCCCHHHHHHHHHHcCceEEEEEcCC-----------CEEEEEEEHHHHHhh--c-----C-------------
Confidence            89999999999999999999999999999986           899999999999641  0     0             


Q ss_pred             hHHHHhhhcccccccccchhhhhhccCccccccC--CCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEE
Q 013262          344 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNT--TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGIL  421 (447)
Q Consensus       344 ~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~--~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGII  421 (447)
                                             ...+++++|++  +++++++++++.+++++|.+.+++.+||||+     +++++|+|
T Consensus       153 -----------------------~~~~v~~im~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~-----~g~lvGiI  204 (494)
T 1vrd_A          153 -----------------------LSKKIKDLMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSK-----DNKLVGLI  204 (494)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             -----------------------CCCcHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCcEEEEEcC-----CCeEEEEE
Confidence                                   01246778887  8999999999999999999999999999997     57899999


Q ss_pred             eHHHHHHHHHhh
Q 013262          422 TRQDLRAFNILT  433 (447)
Q Consensus       422 Tr~DLl~~~~~~  433 (447)
                      |++|+++.....
T Consensus       205 t~~Dll~~~~~~  216 (494)
T 1vrd_A          205 TIKDIMSVIEHP  216 (494)
T ss_dssp             ----CHHHHTCT
T ss_pred             EHHHHHhhhccc
Confidence            999999987644

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=99.26  E-value=6e-13  Score=136.21  Aligned_cols=117  Identities=16%  Similarity=0.229  Sum_probs=0.9

Q ss_pred             cccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccch
Q 013262          256 GELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTE  335 (447)
Q Consensus       256 ~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~  335 (447)
                      +..|..  +++++.|+.++.++.+++.+++++++||+++.        ..+++|+|+||.+|+..       . +     
T Consensus       141 e~g~i~--dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g--------~~~~kLvGIvT~RD~rf-------~-d-----  197 (556)
T 4af0_A          141 ENGFIT--DPLCLGPDATVGDVLEIKAKFGFCGVPITETG--------EPDSKLLGIVTGRDVQF-------Q-D-----  197 (556)
T ss_dssp             CC------------------------------------------------------------------------------
T ss_pred             ccCccC--CCeEcCCCCCHHHHHHHHHHhCCCcccccccc--------CcCCEEEEEEecccccc-------c-c-----
Confidence            345777  78899999999999999999999999999874        12389999999999842       0 0     


Q ss_pred             hhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCC
Q 013262          336 EWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVS  415 (447)
Q Consensus       336 ~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~  415 (447)
                                                     ....++++|.+++++++++.++++|.++|.+++++.+||||+     ++
T Consensus       198 -------------------------------~~~~V~evMT~~lvt~~~~~~leeA~~iL~~~kieklpVVd~-----~g  241 (556)
T 4af0_A          198 -------------------------------AETPIKSVMTTEVVTGSSPITLEKANSLLRETKKGKLPIVDS-----NG  241 (556)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             -------------------------------cceEhhhhcccceEEecCCCCHHHHHHHHHHccccceeEEcc-----CC
Confidence                                           113477889899999999999999999999999999999998     67


Q ss_pred             cEEEEEeHHHHHHHHH
Q 013262          416 PVVGILTRQDLRAFNI  431 (447)
Q Consensus       416 ~lvGIITr~DLl~~~~  431 (447)
                      +++|+||++|+.+...
T Consensus       242 ~LvGlIT~kDi~k~~~  257 (556)
T 4af0_A          242 HLVSLVARSDLLKNQN  257 (556)
T ss_dssp             ----------------
T ss_pred             cEEEEEEechhhhhhh
Confidence            8999999999988543

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=99.24  E-value=5.3e-13  Score=139.42  Aligned_cols=126  Identities=13%  Similarity=0.138  Sum_probs=4.8

Q ss_pred             cccccccc-ccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhh
Q 013262          251 RTLTVGEL-IDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ  329 (447)
Q Consensus       251 ~~l~v~di-M~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~  329 (447)
                      ..++..++ |.+  +++++++++++.+++++|.+++++++||+|++        ...++++|+|+.+||+..  ...   
T Consensus        94 ~~V~~~e~gM~~--~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~--------~~~g~lvGiVt~~Dl~~~--~~~---  158 (503)
T 1me8_A           94 HAVKNFKAGFVV--SDSNVKPDQTFADVLAISQRTTHNTVAVTDDG--------TPHGVLLGLVTQRDYPID--LTQ---  158 (503)
T ss_dssp             HHHHTTTC------------------------------------------------------------------------
T ss_pred             hhhhhcccCccc--CCeEECCCCcHHHHHHHHHHcCceEEEEEECC--------CcCCeEEEEEEHHHHHhh--hcc---
Confidence            44555666 998  89999999999999999999999999999863        012689999999999642  000   


Q ss_pred             hcccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCC--CceecCCCCHHHHHHHHHHcCCCEEEEEe
Q 013262          330 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTT--PYTVIESMSVAKAMVLFRQVGLRHLLVVP  407 (447)
Q Consensus       330 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~--p~tV~~~~sL~~a~~lf~~~gl~~LpVVd  407 (447)
                                                           ...+++++|++.  ++++++++++.+++++|.+.+.+.+||||
T Consensus       159 -------------------------------------~~~~V~diM~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVD  201 (503)
T 1me8_A          159 -------------------------------------TETKVSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIID  201 (503)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             -------------------------------------ccCcHHHHhCCCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEc
Confidence                                                 113467788877  99999999999999999999999999999


Q ss_pred             CcccCCCCcEEEEEeHHHHHHHHHhh
Q 013262          408 KYEAAGVSPVVGILTRQDLRAFNILT  433 (447)
Q Consensus       408 ~~~~~g~~~lvGIITr~DLl~~~~~~  433 (447)
                      +     +++++|+||++|+++.+...
T Consensus       202 e-----~g~lvGiIT~~Dil~~~~~~  222 (503)
T 1me8_A          202 D-----DQHLRYIVFRKDYDRSQVCH  222 (503)
T ss_dssp             -------------------------C
T ss_pred             C-----CCeEEEEEEecHHHHhhhcc
Confidence            7     57899999999999987643

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=99.18  E-value=5.5e-13  Score=139.89  Aligned_cols=178  Identities=15%  Similarity=0.199  Sum_probs=96.6

Q ss_pred             HHHHHHHHhhcCCchHHHHHHHHHHHHHHHhhcCCchHHHHHHhhCCCCCCC--CCCccc----ccccccccccCCCCee
Q 013262          193 SLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILELKGLPFLDA--HPEPWM----RTLTVGELIDAKPPVI  266 (447)
Q Consensus       193 s~~vi~~E~t~~~~~~~p~~ia~~va~~v~~~l~~sIYd~~l~~kg~p~l~~--~~~~~l----~~l~v~diM~~~~~vv  266 (447)
                      +.+.|..|+|+++.+.+|+|.+.+....     ...+.+......|..++..  .++...    .-.+++++|.+  +++
T Consensus        47 ~~v~l~~eLt~~~~~~iP~vsa~md~~t-----~~~la~~ia~~gg~gii~~~~t~e~~~~~v~~v~~~~~im~~--~~~  119 (514)
T 1jcn_A           47 DEVDLTSALTRKITLKTPLISSPMDTVT-----EADMAIAMALMGGIGFIHHNCTPEFQANEVRKVKNFEQGFIT--DPV  119 (514)
T ss_dssp             GGCBCCEESSSSCEESSCEEECCCTTTC-----SHHHHHHHHHTTCEEEECCSSCHHHHHHHHHHHHTCCTTSCS--SCC
T ss_pred             ceeEEEeeccCCeeEeceEEEEehhhhh-----hhhHHHHHHhcCCeeEEecCCCHHHHHHHHHhhhhhhhcccc--CCE
Confidence            4577788999999988988765221100     1122233333333333221  011100    12467899998  888


Q ss_pred             EecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcchHH
Q 013262          267 TLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWV  346 (447)
Q Consensus       267 ~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~  346 (447)
                      ++++++++.+++++|.+++++++||+|++        ..+++++|+|+++|+......                      
T Consensus       120 ~v~~~~tv~ea~~~m~~~~~~~~pVvd~~--------~~~~~lvGiVt~~Dl~~~~~~----------------------  169 (514)
T 1jcn_A          120 VLSPSHTVGDVLEAKMRHGFSGIPITETG--------TMGSKLVGIVTSRDIDFLAEK----------------------  169 (514)
T ss_dssp             CCCC-----------------CEESCC----------------CCEECTTTTC---------------------------
T ss_pred             EECCCCCHHHHHHHHHhcCCCEEEEEeCC--------CcCCEEEEEEEHHHHHhhhhc----------------------
Confidence            99999999999999999999999999872        002799999999998542100                      


Q ss_pred             HHhhhcccccccccchhhhhhccCccccccC--CCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHH
Q 013262          347 ELAEREGKIEEVAVTSEEMEMYIDLHPLTNT--TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQ  424 (447)
Q Consensus       347 d~~~~~~~~~~~~l~~~~~~~~idl~~im~~--~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~  424 (447)
                                         ....+++++|++  +++++++++++.+++++|.+.+.+.+||||+     +|+++|+||++
T Consensus       170 -------------------~~~~~v~~vm~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~-----~g~lvGiIt~~  225 (514)
T 1jcn_A          170 -------------------DHTTLLSEVMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVND-----CDELVAIIART  225 (514)
T ss_dssp             ------------------------------CCBCCCCEETTCCSTTTTTHHHHHTCSCCCEESS-----SSCCC----CC
T ss_pred             -------------------cCCCCHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCCcccEECC-----CCeEEEEEEHH
Confidence                               011346778888  8999999999999999999999999999997     57899999999


Q ss_pred             HHHHHHH
Q 013262          425 DLRAFNI  431 (447)
Q Consensus       425 DLl~~~~  431 (447)
                      |+++++.
T Consensus       226 Dll~~~~  232 (514)
T 1jcn_A          226 DLKKNRD  232 (514)
T ss_dssp             CCSSCCC
T ss_pred             HHHHHhh
Confidence            9987654

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=99.08  E-value=1.1e-11  Score=128.97  Aligned_cols=170  Identities=20%  Similarity=0.209  Sum_probs=25.1

Q ss_pred             HHHHHHHHhhcCCchHHHHHHHHHHHHHHHhhcCCchHHHHHHhhCCCCCCCC-C----Ccccc-cccccccccCCCCee
Q 013262          193 SLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILELKGLPFLDAH-P----EPWMR-TLTVGELIDAKPPVI  266 (447)
Q Consensus       193 s~~vi~~E~t~~~~~~~p~~ia~~va~~v~~~l~~sIYd~~l~~kg~p~l~~~-~----~~~l~-~l~v~diM~~~~~vv  266 (447)
                      ..+.+.+|+|+++.+.+|+|.+.+.+..     ...+....-+..|...+... .    ...+. -..++++|..  +++
T Consensus        32 ~~v~l~t~lt~~l~l~~PIi~a~m~~vt-----~~ela~ava~~GglG~i~~~~~~e~~~~~I~~v~~~~~~m~~--~~~  104 (486)
T 2cu0_A           32 KDVDVSTRITPNVKLNIPILSAAMDTVT-----EWEMAVAMAREGGLGVIHRNMGIEEQVEQVKRVKRAERLIVE--DVI  104 (486)
T ss_dssp             TTCBCCEEEETTEEESSSEEECCCTTTC-----SHHHHHHHHHTTCEEEECSSSCHHHHHHHHHHHHTCC----------
T ss_pred             ceEEEEeeecCCcccccceEEccceeec-----HHHHHHHHHhcCCceeecCCCCHHHHHHHHHhhcchhhcccc--Cce
Confidence            3556678899999998998765432110     01111111111122112110 0    00111 1345778988  899


Q ss_pred             EecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhhhhhcchHH
Q 013262          267 TLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWV  346 (447)
Q Consensus       267 ~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~  346 (447)
                      ++++++++.++++.|.+++++.+||+|+            ++++|+|+.+||..   .                      
T Consensus       105 ~v~~~~tv~ea~~~~~~~~~~~~pVvd~------------~~lvGivt~~Dl~~---~----------------------  147 (486)
T 2cu0_A          105 TIAPDETVDFALFLMEKHGIDGLPVVED------------EKVVGIITKKDIAA---R----------------------  147 (486)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EECCCCCHHHHHHHHHHcCCcEEEEEEC------------CEEEEEEEHHHhcc---C----------------------
Confidence            9999999999999999999999999986            68999999999853   1                      


Q ss_pred             HHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHH
Q 013262          347 ELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDL  426 (447)
Q Consensus       347 d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DL  426 (447)
                                          ...+++++|+++++++++++++.+++++|.+.+.+.+||||+     +++++|+||++|+
T Consensus       148 --------------------~~~~v~~im~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVde-----~g~lvGiiT~~Di  202 (486)
T 2cu0_A          148 --------------------EGKLVKELMTKEVITVPESIEVEEALKIMIENRIDRLPVVDE-----RGKLVGLITMSDL  202 (486)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------CCCCHHHHccCCCeEECCcCcHHHHHHHHHHcCCCEEEEEec-----CCeEEEEEEHHHH
Confidence                                012466778888999999999999999999999999999997     5679999999999


Q ss_pred             HHHHH
Q 013262          427 RAFNI  431 (447)
Q Consensus       427 l~~~~  431 (447)
                      ++...
T Consensus       203 l~~~~  207 (486)
T 2cu0_A          203 VARKK  207 (486)
T ss_dssp             ----C
T ss_pred             HHhhh
Confidence            98754

>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel, FAB complex, membrane protein; 2.51A {Escherichia coli} SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A 2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ...

Probab=98.86  E-value=1.3e-08  Score=105.02  Aligned_cols=121  Identities=14%  Similarity=0.146  Sum_probs=95.6

Q ss_pred             ChHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHhhccCCcchHHHHHHH
Q 013262          100 TNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLG  179 (447)
Q Consensus       100 ~~~~~i~~l~~~~~~~~~~~~~l~~~~~~k~~~~~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~~~~~~a~~G  179 (447)
                      +|-..++..++...  ....   +-.+..|++.+.+|+|+|.+.|...|+..+||++|..+++.++.....+...+..+|
T Consensus       107 sGip~v~~~l~~~~--~~~~---~r~~~~k~~~~~lti~sG~s~GrEGP~vqiGa~ig~~l~~~~~l~~~~~~r~li~~G  181 (465)
T 1ots_A          107 SGIPEIEGALEDQR--PVRW---WRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIGRMVLDIFRLKGDEARHTLLATG  181 (465)
T ss_dssp             CSHHHHHHHHTTCS--CCCH---HHHHHHHHHHHHHHHHTTCSCBSHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHH
T ss_pred             CChHHHHHHHhCCC--CCCc---HHHHHHHHHHHHHHHhcCCCcCCcchHHHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence            34445555555421  1221   234568999999999999999999999999999999999988631223456889999


Q ss_pred             HHHHHHhhhchhHHHHHHHHHhh-cCCc--h--HHHHHHHHHHHHHHHhhc
Q 013262          180 AASLMAGSMRMTVSLCVIFLELT-NNLL--L--LPITMIVLLIAKTVGDSF  225 (447)
Q Consensus       180 ~aa~~~g~~~~p~s~~vi~~E~t-~~~~--~--~~p~~ia~~va~~v~~~l  225 (447)
                      |||.+|++.++|++++++.+|.. +.++  .  +.|.++++++|+.+++.+
T Consensus       182 aaAGlaAaF~APlaGvlFalE~l~~~~~~~~~~~~~~~~as~~a~~v~~~~  232 (465)
T 1ots_A          182 AAAGLAAAFNAPLAGILFIIEEMRPQFRYTLISIKAVFIGVIMSTIMYRIF  232 (465)
T ss_dssp             HHHHHHHHHTCHHHHHHHHTTTTSCSSSCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999965 4444  4  889999999999999865

>4ene_A CLC-EC1, H(+)/CL(-) exchange transporter CLCA; membrane protein, coupled ION transporter, cell membrane, TR protein; HET: DMU MAL; 2.40A {Escherichia coli k-12} PDB: 1ots_A 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2fed_A 2fec_A 1otu_A 2htl_A 2ht2_A 3ejy_A 1ott_A 2h2s_A 4fg6_A 2ht4_A 4ftp_A 3ejz_A 2ht3_A 2htk_A ...

Probab=98.76  E-value=3e-08  Score=101.79  Aligned_cols=99  Identities=16%  Similarity=0.188  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHhhccCCcchH-HHHHHHHHHHHHhhhchhHHHHHHHHHhhc-
Q 013262          126 FILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYTNIDQG-LYAVLGAASLMAGSMRMTVSLCVIFLELTN-  203 (447)
Q Consensus       126 ~~~k~~~~~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~~~~-~~a~~G~aa~~~g~~~~p~s~~vi~~E~t~-  203 (447)
                      +..|++.+.+|.|+|.+.|...|+..+||++|..+++.++.. ..+.. .+..+|+||.+|++.++|++++++.+|... 
T Consensus       113 ~~~k~~~~~lti~~G~s~GrEGP~vqiGa~ig~~~~~~~~~~-~~~~r~~ll~aGaaAG~aaaF~aPlaGvlFalE~l~~  191 (446)
T 4ene_A          113 LPVKFFGGLGTLGGGMVLGREGPTVQIGGNIGRMVLDIFRLK-GDEARHTLLATGAAAGLAAAFNAPLAGILFIIEEMRP  191 (446)
T ss_dssp             HHHHHHHHHHHHHTTCSCBSHHHHHHHHHHHHHHHHHHTTCC-SHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHhcCCccCCcchHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHh
Confidence            458999999999999999999999999999999999988731 23333 789999999999999999999999999765 


Q ss_pred             CC----chHHHHHHHHHHHHHHHhhc
Q 013262          204 NL----LLLPITMIVLLIAKTVGDSF  225 (447)
Q Consensus       204 ~~----~~~~p~~ia~~va~~v~~~l  225 (447)
                      ++    ..+.|.++++++|+.+.+.+
T Consensus       192 ~~~~~~~~~~~~~~as~~a~~v~~~~  217 (446)
T 4ene_A          192 QFRYTLISIKAVFIGVIMSTIMYRIF  217 (446)
T ss_dssp             SSSCCCCCHHHHHHHHHHHHHHHHHT
T ss_pred             hcchhHHHHHHHHHHHHHHHHHHHHH
Confidence            33    24789999999999999877

>3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog, transport protein; 3.20A {Synechocystis} PDB: 3q17_A

Probab=98.75  E-value=5.2e-08  Score=100.45  Aligned_cols=120  Identities=13%  Similarity=0.157  Sum_probs=94.9

Q ss_pred             ChHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHhhccCCcchHHHHHHH
Q 013262          100 TNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLG  179 (447)
Q Consensus       100 ~~~~~i~~l~~~~~~~~~~~~~l~~~~~~k~~~~~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~~~~~~a~~G  179 (447)
                      ++-..++..++...  ....   .-.+..|++.+.+|.|+|.+.|...|+..+||++|..+++.++.. ..+......+|
T Consensus       103 sGIp~v~~~l~g~~--~~~~---~~~~~~k~~~~~ltig~G~S~GrEGP~vqiGa~ig~~l~~~~~~~-~~~~r~ll~aG  176 (466)
T 3nd0_A          103 SGIPQIEGHLEGKL--PLVW---QRVLPIKLVGGFLSLGAGMLAGFEGPTIQMGGSIGQMTGGWFKAT-QENQRILIAVG  176 (466)
T ss_dssp             CSHHHHHHHTTSSS--CCCH---HHHHHHHHHHHHHHHHTTCSCCTHHHHHHHHHHHHHHHHHHTTCC-HHHHHHHHHHH
T ss_pred             CCHHHHHHHHcCCC--CCch---HHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHcCCC-hhHHHHHHHHH
Confidence            34445666665431  2221   223457999999999999999999999999999999999998742 23456889999


Q ss_pred             HHHHHHhhhchhHHHHHHHHHh-hcCC--c--hHHHHHHHHHHHHHHHhhc
Q 013262          180 AASLMAGSMRMTVSLCVIFLEL-TNNL--L--LLPITMIVLLIAKTVGDSF  225 (447)
Q Consensus       180 ~aa~~~g~~~~p~s~~vi~~E~-t~~~--~--~~~p~~ia~~va~~v~~~l  225 (447)
                      +||.+|++.++|++++++.+|. .+++  .  .+.|.++++++|+.+++.+
T Consensus       177 aAAGlaAaF~APlaGvlFalE~l~~~~~~~~~~~~~~~~as~~a~~v~~~~  227 (466)
T 3nd0_A          177 AGAGLATAFNAPLAGVALIGEEMHPRFRSQTLAYHSLLFGCVMATIILRMI  227 (466)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHSSSCCCCSSCCTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCchHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999995 4445  2  3669999999999999876

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=98.69  E-value=4.1e-08  Score=74.21  Aligned_cols=46  Identities=13%  Similarity=0.313  Sum_probs=41.9

Q ss_pred             eeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHH
Q 013262          265 VITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLAL  322 (447)
Q Consensus       265 vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L  322 (447)
                      ++++++++++.++.++|.+++++++||+|+            ++++|+||.+|+.+.+
T Consensus         2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d~------------~~lvGIvT~~Di~~~~   47 (70)
T 3ghd_A            2 AIVVQPKDTVDRVAKILSRNKAGSAVVMEG------------DEILGVVTERDILDKV   47 (70)
T ss_dssp             EEEECTTCBHHHHHHHHHHTTCSEEEEEET------------TEEEEEEEHHHHHHHT
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEEEC------------CEEEEEEEHHHHHHHH
Confidence            678999999999999999999999999985            7999999999997543

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=98.65  E-value=3.3e-08  Score=91.28  Aligned_cols=102  Identities=13%  Similarity=0.129  Sum_probs=54.6

Q ss_pred             cccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhc
Q 013262          252 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEK  331 (447)
Q Consensus       252 ~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~  331 (447)
                      +.+++++|.+  +++++++++++.++.+.|.+++++.+||+|++           ++++|+|+++|++..+.......  
T Consensus        71 ~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-----------g~lvGiit~~Dil~~~~~~~~~~--  135 (213)
T 1vr9_A           71 DSSVFNKVSL--PDFFVHEEDNITHALLLFLEHQEPYLPVVDEE-----------MRLKGAVSLHDFLEALIEALAMD--  135 (213)
T ss_dssp             TSBSGGGCBC--TTCCEETTSBHHHHHHHHHHCCCSEEEEECTT-----------CBEEEEEEHHHHHHHHHHSCC----
T ss_pred             CCcHHHHccC--CCEEECCCCcHHHHHHHHHHhCCCEEEEEcCC-----------CEEEEEEEHHHHHHHHHHHhcCC--
Confidence            3469999998  88999999999999999999999999999986           89999999999988664321000  


Q ss_pred             ccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeC
Q 013262          332 RRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPK  408 (447)
Q Consensus       332 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~  408 (447)
                                     +...                   .+      .+.+.....++.++.++|.+.+.+.++|++.
T Consensus       136 ---------------~~~~-------------------~l------~~~~~~~~~~l~~~~~~l~~~~~~~l~V~~~  172 (213)
T 1vr9_A          136 ---------------VPGI-------------------RF------SVLLEDKPGELRKVVDALALSNINILSVITT  172 (213)
T ss_dssp             -----------------------------------------------------------------------------
T ss_pred             ---------------CCcE-------------------EE------EEEeCCCCccHHHHHHHHHHCCCcEEEEEEE
Confidence                           0000                   00      0111123345999999999999999999865

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=98.57  E-value=1.4e-07  Score=101.04  Aligned_cols=101  Identities=10%  Similarity=0.006  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHH--Hhhcc--CCcchHHHHHHHHHHHHHhhhchhHHHHHHHHH
Q 013262          125 FFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGM--AMGSY--TNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLE  200 (447)
Q Consensus       125 ~~~~k~~~~~~t~g~g~~gG~f~P~l~iGa~~G~~~g~--~~~~~--~~~~~~~~a~~G~aa~~~g~~~~p~s~~vi~~E  200 (447)
                      .++.|++.+++|+|+|.+.|...|+..+||++|..++.  .++..  ...+...+..+|+||.+|+++++|++++++.+|
T Consensus       104 ~~~~K~~~~~l~igsG~s~GrEGP~vqiGa~ig~~~~~~~~f~~~~~~~~~~r~ll~aGaaAG~aaaF~aPlaGvlFalE  183 (632)
T 3org_A          104 VLFAKALGLICAIGGGLPVGWEGPNVHIACIIAHQFYRLGVFKELCTDRALRLQTLAAACAVGLASSFGAPLGGVLYSIE  183 (632)
T ss_dssp             HHHHHHHHHHHHHHTTCSCBSHHHHHHHHHHHHHHHTTSHHHHHHHHSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCccccchHHHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHHHHHHhCCccHhHHHHHH
Confidence            34589999999999999999999999999999998887  55421  122345788999999999999999999999999


Q ss_pred             hhcC-C--chHHHHHHHHHHHHHHHhhc
Q 013262          201 LTNN-L--LLLPITMIVLLIAKTVGDSF  225 (447)
Q Consensus       201 ~t~~-~--~~~~p~~ia~~va~~v~~~l  225 (447)
                      .... +  ..+.|.++++++|.++.+.+
T Consensus       184 ~~~~~~~~~~~~~~~~as~~a~~v~~~~  211 (632)
T 3org_A          184 TIASFYLVQAFWKGVLSALSGAIVYELL  211 (632)
T ss_dssp             HTCSEEETTHHHHHHHHHHHHHHHTTC-
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence            8764 2  35688899999999887765

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=98.54  E-value=8e-08  Score=85.11  Aligned_cols=57  Identities=18%  Similarity=0.165  Sum_probs=52.8

Q ss_pred             ccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHH
Q 013262          368 YIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAF  429 (447)
Q Consensus       368 ~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~  429 (447)
                      .++++++|.++++++++++++.+|+++|.+.+++++||+|+     +|+++|+||.+|+++.
T Consensus        17 ~~~V~diM~~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~-----~g~lvGiit~~Dll~~   73 (170)
T 4esy_A           17 QVPIRDILTSPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQ-----NGHLVGIITESDFLRG   73 (170)
T ss_dssp             TSBGGGGCCSCCCCEETTSBHHHHHHHHHHTTCSEEEEECT-----TSCEEEEEEGGGGGGG
T ss_pred             CCCHHHhcCCCCcEECCcCcHHHHHHHHHHcCCeEEEEEcC-----CccEEEEEEHHHHHHH
Confidence            36789999999999999999999999999999999999997     5789999999999864

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=98.50  E-value=2.5e-07  Score=69.77  Aligned_cols=48  Identities=13%  Similarity=0.205  Sum_probs=43.2

Q ss_pred             CceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHHHh
Q 013262          379 PYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL  432 (447)
Q Consensus       379 p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~~~  432 (447)
                      +++++|++++.+|.++|.+.+++++||+|+      ++++||||.+|+++....
T Consensus         2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d~------~~lvGIvT~~Di~~~~~~   49 (70)
T 3ghd_A            2 AIVVQPKDTVDRVAKILSRNKAGSAVVMEG------DEILGVVTERDILDKVVA   49 (70)
T ss_dssp             EEEECTTCBHHHHHHHHHHTTCSEEEEEET------TEEEEEEEHHHHHHHTTT
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEEEC------CEEEEEEEHHHHHHHHHh
Confidence            578999999999999999999999999984      579999999999876543

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=98.42  E-value=5.1e-07  Score=85.48  Aligned_cols=63  Identities=11%  Similarity=0.219  Sum_probs=55.7

Q ss_pred             ccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHHHhh
Q 013262          368 YIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILT  433 (447)
Q Consensus       368 ~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~~~~  433 (447)
                      .+.++++|.+++++|.+++++.+|.++|.+.+++.+||||+   +++++++|+||++||+++....
T Consensus        12 ~~~v~diMt~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~---~~~~~LvGiIt~~dl~~~l~~~   74 (250)
T 2d4z_A           12 NIQVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDT---PDTNTLLGSIDRTEVEGLLQRR   74 (250)
T ss_dssp             SCBTTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESC---TTTCBEEEEEEHHHHHHHHHHH
T ss_pred             CCChHHhcCCCCeEECCCCCHHHHHHHHHhcCCCEEEEEec---CCCCeEEEEEEHHHHHHHHHHh
Confidence            35688999999999999999999999999999999999986   3346899999999999876644

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=98.35  E-value=6.7e-07  Score=83.97  Aligned_cols=60  Identities=15%  Similarity=0.226  Sum_probs=55.0

Q ss_pred             cCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHHHhh
Q 013262          369 IDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILT  433 (447)
Q Consensus       369 idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~~~~  433 (447)
                      ..++++|.+++.++++++++.+|+++|.+.+++++||+|+     +|+++|+||..|+++++...
T Consensus         7 ~~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~-----~~~l~Giit~~di~~~~~~~   66 (245)
T 3l2b_A            7 LKVEDLEMDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADG-----NNHLLGMLSTSNITATYMDI   66 (245)
T ss_dssp             CBGGGSCCBCCCCBCTTCBHHHHHHHHHHTTCSEEEEECT-----TCBEEEEEEHHHHHHHHHCC
T ss_pred             CcHHHhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcC-----CCEEEEEEEHHHHHHHHHHh
Confidence            4688999999999999999999999999999999999997     57899999999999988643

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=98.34  E-value=1e-06  Score=75.85  Aligned_cols=60  Identities=18%  Similarity=0.247  Sum_probs=53.8

Q ss_pred             cCccccccC--CCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCC-CcEEEEEeHHHHHHHHHhh
Q 013262          369 IDLHPLTNT--TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGV-SPVVGILTRQDLRAFNILT  433 (447)
Q Consensus       369 idl~~im~~--~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~-~~lvGIITr~DLl~~~~~~  433 (447)
                      ..++++|.+  +++++++++++.+|.++|.+.+.+++||+|+     + ++++|+||++|+++...+.
T Consensus        23 ~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~-----~~~~lvGivt~~dl~~~~~~~   85 (148)
T 3lv9_A           23 KKIREIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRK-----NKDDILGFVHIRDLYNQKINE   85 (148)
T ss_dssp             CBGGGTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESS-----STTSEEEEEEHHHHHHHHHHH
T ss_pred             CCHHHccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcC-----CCCcEEEEEEHHHHHHHHhcC
Confidence            457889988  8999999999999999999999999999986     4 6899999999999886544

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=98.33  E-value=7.1e-07  Score=79.19  Aligned_cols=60  Identities=13%  Similarity=0.102  Sum_probs=53.1

Q ss_pred             cCcccccc--CCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCC-CcEEEEEeHHHHHHHHHhh
Q 013262          369 IDLHPLTN--TTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGV-SPVVGILTRQDLRAFNILT  433 (447)
Q Consensus       369 idl~~im~--~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~-~~lvGIITr~DLl~~~~~~  433 (447)
                      ..++++|.  ++++++++++++.+|+++|.+.+.+++||+|+     + ++++|+||.+|++++..+.
T Consensus        42 ~~v~diM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~-----~~~~lvGivt~~dl~~~~~~~  104 (172)
T 3lhh_A           42 RTISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRN-----NVDDMVGIISAKQLLSESIAG  104 (172)
T ss_dssp             -CTTTTSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESS-----STTSEEEEEEHHHHHHHHHTT
T ss_pred             CCHHHhCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeC-----CCCeEEEEEEHHHHHHHHhhc
Confidence            46788998  67889999999999999999999999999986     4 6899999999999987643

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=98.29  E-value=1.2e-06  Score=75.51  Aligned_cols=59  Identities=17%  Similarity=0.173  Sum_probs=53.7

Q ss_pred             cCccccccC--CCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHHHh
Q 013262          369 IDLHPLTNT--TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL  432 (447)
Q Consensus       369 idl~~im~~--~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~~~  432 (447)
                      ..++++|.+  +++++++++++.+|.++|.+.+.+++||+|+     +++++|+||++|+++...+
T Consensus        28 ~~v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~-----~~~~~Givt~~dl~~~~~~   88 (149)
T 3k2v_A           28 LRVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDD-----DMNIIGIFTDGDLRRVFDT   88 (149)
T ss_dssp             SBGGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECT-----TCBEEEEEEHHHHHHHHCS
T ss_pred             cCHHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECC-----CCcEEEEecHHHHHHHHhc
Confidence            468889998  8999999999999999999999999999997     5789999999999987654

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=98.28  E-value=1.6e-06  Score=73.81  Aligned_cols=59  Identities=10%  Similarity=0.159  Sum_probs=53.4

Q ss_pred             cCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCC--cEEEEEeHHHHHHHHHh
Q 013262          369 IDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVS--PVVGILTRQDLRAFNIL  432 (447)
Q Consensus       369 idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~--~lvGIITr~DLl~~~~~  432 (447)
                      +.++++|.+++.++++++++.+|.++|.+.+.+++||+|+     ++  +++|+||++|+++...+
T Consensus         5 ~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-----~~~~~~~Givt~~dl~~~~~~   65 (141)
T 2rih_A            5 IRTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTAR-----DNPKRPVAVVSERDILRAVAQ   65 (141)
T ss_dssp             CBGGGGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEET-----TEEEEEEEEEEHHHHHHHHHT
T ss_pred             eEHHHHhcCCCeEeCCCCcHHHHHHHHHHcCCCEEEEEcC-----CCcceeEEEEEHHHHHHHHhc
Confidence            4577899999999999999999999999999999999997     45  89999999999987654

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=98.28  E-value=9.3e-07  Score=73.11  Aligned_cols=57  Identities=21%  Similarity=0.328  Sum_probs=51.6

Q ss_pred             ccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHHHh
Q 013262          371 LHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL  432 (447)
Q Consensus       371 l~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~~~  432 (447)
                      ++++|.+++.++++++++.++.+.|.+.+.+++||+|+     +++++|+||++|+.+...+
T Consensus         3 v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-----~~~~~G~vt~~dl~~~~~~   59 (122)
T 3kpb_A            3 VKDILSKPPITAHSNISIMEAAKILIKHNINHLPIVDE-----HGKLVGIITSWDIAKALAQ   59 (122)
T ss_dssp             HHHHCCSCCCCEETTSBHHHHHHHHHHHTCSCEEEECT-----TSBEEEEECHHHHHHHHHT
T ss_pred             hHHhhCCCCEEeCCCCcHHHHHHHHHHcCCCeEEEECC-----CCCEEEEEEHHHHHHHHHh
Confidence            45678889999999999999999999999999999997     5789999999999987654

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=98.26  E-value=2e-06  Score=72.77  Aligned_cols=57  Identities=23%  Similarity=0.239  Sum_probs=51.3

Q ss_pred             cCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHH
Q 013262          369 IDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFN  430 (447)
Q Consensus       369 idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~  430 (447)
                      ..++++|.++++++++++++.+|.+.|.+.+.+++||+|+     +++++|+||++|+++..
T Consensus         7 ~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-----~~~~~Givt~~dl~~~~   63 (138)
T 2yzi_A            7 APIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVIND-----DGNVVGFFTKSDIIRRV   63 (138)
T ss_dssp             SBGGGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECT-----TSCEEEEEEHHHHHHHT
T ss_pred             hhHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC-----CCcEEEEEeHHHHHHHH
Confidence            4577889999999999999999999999999999999986     56899999999998543

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=98.25  E-value=1.6e-06  Score=75.88  Aligned_cols=59  Identities=22%  Similarity=0.398  Sum_probs=53.4

Q ss_pred             cCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHHHh
Q 013262          369 IDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL  432 (447)
Q Consensus       369 idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~~~  432 (447)
                      +.++++|.++++++.+++++.+|.++|.+.+.+.+||+|+     +++++|+||++|+++....
T Consensus         5 ~~v~dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~-----~~~lvGivt~~dl~~~~~~   63 (160)
T 2o16_A            5 IKVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDA-----NKKLLGIVSQRDLLAAQES   63 (160)
T ss_dssp             CBGGGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECT-----TCBEEEEEEHHHHHHHHHH
T ss_pred             CcHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC-----CCcEEEEEeHHHHHHHHHH
Confidence            4577899899999999999999999999999999999986     5689999999999987654

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=98.19  E-value=3e-06  Score=71.60  Aligned_cols=58  Identities=19%  Similarity=0.236  Sum_probs=52.1

Q ss_pred             cCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHH-HHHHH
Q 013262          369 IDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDL-RAFNI  431 (447)
Q Consensus       369 idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DL-l~~~~  431 (447)
                      ..++++|.+++.++++++++.+|.++|.+.+.+++||+|+     +++++|+||++|+ .+...
T Consensus         8 ~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-----~~~~~Givt~~dl~~~~~~   66 (138)
T 2p9m_A            8 IKVKDVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDD-----ENKVIGIVTTTDIGYNLIR   66 (138)
T ss_dssp             CBGGGTSBCSCCCEETTSBHHHHHHHHHHHTCCEEEEECT-----TCBEEEEEEHHHHHHHHTT
T ss_pred             CCHHHhhcCCceEECCCCcHHHHHHHHHHCCCcEEEEECC-----CCeEEEEEEHHHHHHHHHh
Confidence            4577899889999999999999999999999999999987     5689999999999 77544

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=98.18  E-value=2.7e-06  Score=70.47  Aligned_cols=56  Identities=18%  Similarity=0.093  Sum_probs=50.1

Q ss_pred             ccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHHHh
Q 013262          371 LHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL  432 (447)
Q Consensus       371 l~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~~~  432 (447)
                      ++++|.+++.++++++++.+|.++|.+.+.+++||+|+      ++++|+||++|+++...+
T Consensus         3 v~~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~------~~~~G~it~~dl~~~~~~   58 (125)
T 1pbj_A            3 VEDVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVKE------GVRVGIVTTWDVLEAIAE   58 (125)
T ss_dssp             HHHHCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEET------TEEEEEEEHHHHHHHHHH
T ss_pred             HHHhcCCCceEECCCCcHHHHHHHHHHcCCCEEEEEeC------CeeEEEEeHHHHHHHHhc
Confidence            45678889999999999999999999999999999984      579999999999977654

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=98.18  E-value=3.7e-06  Score=73.30  Aligned_cols=57  Identities=26%  Similarity=0.413  Sum_probs=51.3

Q ss_pred             cCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHHH
Q 013262          369 IDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI  431 (447)
Q Consensus       369 idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~~  431 (447)
                      +.++++|.+ ++++.+++++.+|.++|.+.+.+++||+|+     +++++|+||.+|+++...
T Consensus        17 ~~v~~im~~-~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~-----~~~~~Givt~~dl~~~~~   73 (159)
T 3fv6_A           17 LQVKDFQSI-PVVIHENVSVYDAICTMFLEDVGTLFVVDR-----DAVLVGVLSRKDLLRASI   73 (159)
T ss_dssp             CBGGGSCBC-CCEEETTSBHHHHHHHHHHHTCSEEEEECT-----TSCEEEEEEHHHHHHHHT
T ss_pred             CCHHHHcCC-CEEECCCCcHHHHHHHHHHCCCCEEEEEcC-----CCcEEEEEeHHHHHHHhh
Confidence            567888986 679999999999999999999999999997     568999999999998763

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=98.15  E-value=1.9e-06  Score=72.13  Aligned_cols=59  Identities=17%  Similarity=0.183  Sum_probs=54.1

Q ss_pred             ccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHh
Q 013262          253 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK  324 (447)
Q Consensus       253 l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~  324 (447)
                      .+++++|.+  ++.++++++++.++++.|.+++.+.+||+|++           |+++|+|+++|+++.+.+
T Consensus        68 ~~v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~-----------g~~~Giit~~dll~~l~~  126 (128)
T 3gby_A           68 EKLGEELLE--TVRSYRPGEQLFDNLISVAAAKCSVVPLADED-----------GRYEGVVSRKRILGFLAE  126 (128)
T ss_dssp             CBCCGGGCB--CCCCBCTTSBGGGSHHHHHHCSSSEEEEECTT-----------CBEEEEEEHHHHHHHHHT
T ss_pred             CcHHHHccC--CCcEECCCCCHHHHHHHHHhCCCcEEEEECCC-----------CCEEEEEEHHHHHHHHHh
Confidence            678999998  88899999999999999999999999999977           899999999999987653

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=98.15  E-value=2e-06  Score=72.32  Aligned_cols=60  Identities=12%  Similarity=0.237  Sum_probs=51.0

Q ss_pred             cCccccccC--CCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHHHh
Q 013262          369 IDLHPLTNT--TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL  432 (447)
Q Consensus       369 idl~~im~~--~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~~~  432 (447)
                      ..++++|.+  ..+++++++++.+|.++|.+.+.+++||+|+   + .++++|+||.+|+++...+
T Consensus         6 ~~v~~iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~---~-~~~~~Givt~~dl~~~~~~   67 (130)
T 3i8n_A            6 VPVTQVMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSE---Q-KDNIIGFVHRLELFKMQQS   67 (130)
T ss_dssp             -CCTTTSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESS---S-TTCEEEECCHHHHHHHHHT
T ss_pred             CCHhhCCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeC---C-CCcEEEEEEHHHHHHHHhc
Confidence            457888984  4558999999999999999999999999986   2 2689999999999988654

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=98.13  E-value=1.1e-06  Score=73.56  Aligned_cols=57  Identities=14%  Similarity=0.203  Sum_probs=49.2

Q ss_pred             CccccccCC--CceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCC-CcEEEEEeHHHHHHHHH
Q 013262          370 DLHPLTNTT--PYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGV-SPVVGILTRQDLRAFNI  431 (447)
Q Consensus       370 dl~~im~~~--p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~-~~lvGIITr~DLl~~~~  431 (447)
                      .++++|.+.  ++++++++++.+|.++|.+.+.+++||+|+     + ++++|+||.+|+++...
T Consensus         4 ~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~-----~~~~~vGivt~~dl~~~~~   63 (127)
T 3nqr_A            4 RVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISE-----DKDHIEGILMAKDLLPFMR   63 (127)
T ss_dssp             BHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESS-----STTCEEEEEEGGGGGGGGS
T ss_pred             CHHHhcccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcC-----CCCcEEEEEEHHHHHHHHh
Confidence            355677744  889999999999999999999999999986     4 68999999999987653

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=98.13  E-value=2.1e-06  Score=73.77  Aligned_cols=58  Identities=12%  Similarity=0.122  Sum_probs=51.0

Q ss_pred             cCcccccc--CCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHHH
Q 013262          369 IDLHPLTN--TTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI  431 (447)
Q Consensus       369 idl~~im~--~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~~  431 (447)
                      +.++++|.  .+++++++++++.+|.++|.+.+.+++||+|+     +++++|+||++|+++...
T Consensus        15 ~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~-----~~~~~Givt~~dl~~~~~   74 (150)
T 3lqn_A           15 IFVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDP-----MYKLHGLISTAMILDGIL   74 (150)
T ss_dssp             CBHHHHSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECT-----TCBEEEEEEHHHHHHHTB
T ss_pred             CChhhcccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECC-----CCCEEEEEEHHHHHHHHH
Confidence            45667777  45889999999999999999999999999987     578999999999998764

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=98.13  E-value=2.2e-06  Score=72.20  Aligned_cols=58  Identities=2%  Similarity=-0.014  Sum_probs=49.5

Q ss_pred             cccccc--CCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHHHh
Q 013262          371 LHPLTN--TTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL  432 (447)
Q Consensus       371 l~~im~--~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~~~  432 (447)
                      ++++|.  ++++++++++++.+|.++|.+.+.+++||+++    ++++++|+||.+|++++..+
T Consensus         4 v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~----~~~~lvGivt~~dl~~~~~~   63 (130)
T 3hf7_A            4 VNDIMVPRNEIVGIDINDDWKSIVRQLTHSPHGRIVLYRD----SLDDAISMLRVREAYRLMTE   63 (130)
T ss_dssp             HHHHSEEGGGCCEEETTSCHHHHHHHHHTCSSSEEEEESS----SGGGEEEEEEHHHHHHHHTS
T ss_pred             HHHhCccHHHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcC----CCCcEEEEEEHHHHHHHHhc
Confidence            456674  46789999999999999999999999999964    14689999999999987654

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=98.12  E-value=3.3e-06  Score=73.83  Aligned_cols=59  Identities=17%  Similarity=0.284  Sum_probs=52.4

Q ss_pred             ccccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHh
Q 013262          251 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK  324 (447)
Q Consensus       251 ~~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~  324 (447)
                      ...+++++|.+  ++.++++++++.++++.|.+++  .+||||++           |+++|+||++|+++.+.+
T Consensus        84 ~~~~v~~im~~--~~~~v~~~~~l~~~~~~m~~~~--~lpVVd~~-----------g~l~GiiT~~Dil~~~~~  142 (156)
T 3k6e_A           84 ADTDIVHMTKT--DVAVVSPDFTITEVLHKLVDES--FLPVVDAE-----------GIFQGIITRKSILKAVNA  142 (156)
T ss_dssp             TTSBGGGTCBC--SCCCBCTTCCHHHHHHHTTTSS--EEEEECTT-----------SBEEEEEEHHHHHHHHHH
T ss_pred             cccCHHHhhcC--CceecccccHHHHHHHHHHHcC--CeEEEecC-----------CEEEEEEEHHHHHHHHHH
Confidence            46789999999  8999999999999999998654  59999987           899999999999987754

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=98.12  E-value=1.6e-06  Score=72.90  Aligned_cols=58  Identities=12%  Similarity=0.155  Sum_probs=49.6

Q ss_pred             Ccccccc--CCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHHH
Q 013262          370 DLHPLTN--TTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI  431 (447)
Q Consensus       370 dl~~im~--~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~~  431 (447)
                      .++++|.  ++++++++++++.+|.++|.+.+.+++||+|+   + .++++|+||.+|++++..
T Consensus         6 ~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~---~-~~~~~Givt~~dl~~~~~   65 (129)
T 3jtf_A            6 TVADIMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYED---D-RDNIIGILLAKDLLRYML   65 (129)
T ss_dssp             BHHHHCEEGGGCCCEETTSCHHHHHHHHHHSCCSEEEEESS---S-TTCEEEEEEGGGGGGGGT
T ss_pred             CHHHhCccHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEcC---C-CCcEEEEEEHHHHHhHhc
Confidence            4566777  56789999999999999999999999999986   2 268999999999987653

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=98.11  E-value=3.8e-06  Score=73.06  Aligned_cols=61  Identities=13%  Similarity=0.183  Sum_probs=52.6

Q ss_pred             cCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHHHh
Q 013262          369 IDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL  432 (447)
Q Consensus       369 idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~~~  432 (447)
                      ..++++|.++++++++++++.+|.++|.+.+.+++||+|+   +.+++++|+||++|+.+...+
T Consensus        13 ~~v~dim~~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~---~~~~~~~Givt~~dl~~~~~~   73 (164)
T 2pfi_A           13 VRVEHFMNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVES---TESQILVGIVQRAQLVQALQA   73 (164)
T ss_dssp             CBHHHHCBCCCCCEETTCBHHHHHHHHHTCCCSEEEEESC---TTTCBEEEEEEHHHHHHHHHC
T ss_pred             CCHHHHcCCCCeEECCCCcHHHHHHHHHhCCCCceeEEec---CCCCEEEEEEEHHHHHHHHHh
Confidence            4567788899999999999999999999999999999983   114689999999999987643

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=98.11  E-value=6.1e-06  Score=73.77  Aligned_cols=58  Identities=21%  Similarity=0.198  Sum_probs=53.0

Q ss_pred             cCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHHH
Q 013262          369 IDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI  431 (447)
Q Consensus       369 idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~~  431 (447)
                      +.++++|.++++++++++++.+|+++|.+.+.+++||+|+     +++++|+||.+|+++...
T Consensus         9 ~~v~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~-----~g~~vGivt~~dl~~~~~   66 (184)
T 1pvm_A            9 MRVEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDD-----NGNDVGLLSERSIIKRFI   66 (184)
T ss_dssp             CBGGGTSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECT-----TSCEEEEEEHHHHHHHTG
T ss_pred             cCHHHhcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC-----CCcEEEEEeHHHHHHHHh
Confidence            5678899999999999999999999999999999999986     468999999999998754

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=98.10  E-value=3e-06  Score=73.77  Aligned_cols=59  Identities=8%  Similarity=0.077  Sum_probs=52.0

Q ss_pred             cCccccccC--CCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHHHh
Q 013262          369 IDLHPLTNT--TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL  432 (447)
Q Consensus       369 idl~~im~~--~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~~~  432 (447)
                      ..++++|.+  +++++++++++.+|.++|.+.+.+.+||+|+     +++++|+||++|+++....
T Consensus        14 ~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~-----~~~lvGivt~~dl~~~~~~   74 (159)
T 1yav_A           14 ATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDP-----SYRLHGLIGTNMIMNSIFG   74 (159)
T ss_dssp             CBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECT-----TCBEEEEEEHHHHHHHHBC
T ss_pred             hhHHHHhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECC-----CCCEEEEeEHHHHHHHhhh
Confidence            456677877  8899999999999999999999999999987     5689999999999987643

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=98.10  E-value=4.2e-06  Score=70.27  Aligned_cols=60  Identities=20%  Similarity=0.363  Sum_probs=54.5

Q ss_pred             cccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHh
Q 013262          252 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK  324 (447)
Q Consensus       252 ~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~  324 (447)
                      ..+++++|.+  ++.++++++++.++++.|.+++.+.+||+|++           |+++|+|+++|++..+.+
T Consensus        66 ~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~-----------g~~~Giit~~dll~~~~~  125 (133)
T 2ef7_A           66 ETKAEEFMTA--SLITIREDSPITGALALMRQFNIRHLPVVDDK-----------GNLKGIISIRDITRAIDD  125 (133)
T ss_dssp             TCBGGGTSEE--CCCCEETTSBHHHHHHHHHHHTCSEEEEECTT-----------SCEEEEEEHHHHHHHHHH
T ss_pred             ccCHHHHcCC--CCEEECCCCCHHHHHHHHHHcCCCEEEEECCC-----------CeEEEEEEHHHHHHHHHH
Confidence            4678999998  88899999999999999999999999999976           899999999999887654

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=98.10  E-value=4.7e-06  Score=72.13  Aligned_cols=58  Identities=10%  Similarity=0.187  Sum_probs=52.2

Q ss_pred             cCccccccC--CCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHHH
Q 013262          369 IDLHPLTNT--TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI  431 (447)
Q Consensus       369 idl~~im~~--~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~~  431 (447)
                      ..++++|.+  +++++.+++++.+|.++|.+.+.+++||+|+     +++++|+||++|+++...
T Consensus        11 ~~v~~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~-----~~~~~Givt~~dl~~~~~   70 (157)
T 2emq_A           11 MTVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDT-----SYKLHGLISMTMMMDAIL   70 (157)
T ss_dssp             CBSTTTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECT-----TCCEEEEEEHHHHHHHSB
T ss_pred             CcHHhhccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcC-----CCCEEEEeeHHHHHHHHh
Confidence            567888986  8889999999999999999999999999986     567999999999998754

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=98.09  E-value=6e-06  Score=75.61  Aligned_cols=60  Identities=13%  Similarity=0.221  Sum_probs=55.4

Q ss_pred             cccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHh
Q 013262          252 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK  324 (447)
Q Consensus       252 ~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~  324 (447)
                      +.+++++|.+  +++++++++++.++++.|.+++.+.+||||++           |+++|+||.+|++..+..
T Consensus       115 ~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~~-----------g~lvGiIT~~Dil~~i~~  174 (205)
T 3kxr_A          115 HEPLISLLSE--DSRALTANTTLLDAAEAIEHSREIELPVIDDA-----------GELIGRVTLRAATALVRE  174 (205)
T ss_dssp             TSBGGGGCCS--SCCCEETTSCHHHHHHHHHTSSCSEEEEECTT-----------SBEEEEEEHHHHHHHHHH
T ss_pred             cchHHHHhcC--CCeEECCCCCHHHHHHHHHhcCCCEEEEEcCC-----------CeEEEEEEHHHHHHHHHH
Confidence            4679999998  88999999999999999999999999999987           899999999999987754

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=98.09  E-value=5.4e-06  Score=69.86  Aligned_cols=60  Identities=18%  Similarity=0.236  Sum_probs=54.5

Q ss_pred             ccccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHh
Q 013262          251 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK  324 (447)
Q Consensus       251 ~~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~  324 (447)
                      ...+++++|.+  ++.++++++++.++++.|.+++.+.+||+| +           |+++|+|+++|+++.+.+
T Consensus        72 ~~~~v~~~m~~--~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~-----------g~~~Giit~~dll~~~~~  131 (135)
T 2rc3_A           72 KDTQVKEIMTR--QVAYVDLNNTNEDCMALITEMRVRHLPVLD-D-----------GKVIGLLSIGDLVKDAIS  131 (135)
T ss_dssp             GGSBGGGTSBC--SCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-T-----------TEEEEEEEHHHHHHHHHC
T ss_pred             ccCCHHHhccC--CCeEECCCCcHHHHHHHHHHhCCCEEEEEe-C-----------CEEEEEEEHHHHHHHHHh
Confidence            45789999998  889999999999999999999999999999 5           899999999999886643

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=98.08  E-value=3.5e-06  Score=73.91  Aligned_cols=60  Identities=20%  Similarity=0.148  Sum_probs=52.3

Q ss_pred             cCccccccC---CCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHHHhh
Q 013262          369 IDLHPLTNT---TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILT  433 (447)
Q Consensus       369 idl~~im~~---~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~~~~  433 (447)
                      +.++++|.+   +++++.+++++.+|.++|.+.+.+.+||+|+     +++++|+||++|+++...+.
T Consensus        24 ~~v~dim~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~-----~~~~~Givt~~dl~~~~~~~   86 (165)
T 3fhm_A           24 TFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDA-----DGVVLGIFTERDLVKAVAGQ   86 (165)
T ss_dssp             CBHHHHHHHHCSCCCEECTTSBHHHHHHHHHHHTCSEEEEECT-----TSCEEEEEEHHHHHHHHHHH
T ss_pred             cCHHHHhccCCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcC-----CCeEEEEEEHHHHHHHHHhc
Confidence            456677774   6899999999999999999999999999997     57899999999999876653

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=98.08  E-value=3.8e-06  Score=71.91  Aligned_cols=60  Identities=23%  Similarity=0.381  Sum_probs=54.9

Q ss_pred             cccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHh
Q 013262          252 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK  324 (447)
Q Consensus       252 ~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~  324 (447)
                      ..+++++|.+  +++++++++++.++++.|.+++.+.+||+|++           |+++|+|+++|+++.+.+
T Consensus        84 ~~~v~~~m~~--~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~-----------g~~~Giit~~dil~~~~~  143 (152)
T 4gqw_A           84 GKLVGDLMTP--APLVVEEKTNLEDAAKILLETKYRRLPVVDSD-----------GKLVGIITRGNVVRAALQ  143 (152)
T ss_dssp             CCBHHHHSEE--SCCCEESSSBHHHHHHHHHHSSCCEEEEECTT-----------SBEEEEEEHHHHHHHHHC
T ss_pred             cccHHHhcCC--CceEECCCCcHHHHHHHHHHCCCCEEEEECCC-----------CcEEEEEEHHHHHHHHHh
Confidence            4679999998  88899999999999999999999999999976           899999999999987754

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=98.08  E-value=8.7e-06  Score=69.04  Aligned_cols=54  Identities=7%  Similarity=0.090  Sum_probs=49.5

Q ss_pred             cccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHHHh
Q 013262          374 LTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL  432 (447)
Q Consensus       374 im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~~~  432 (447)
                      +|.++++++++++++.+|+++|.+.+.+.+||+|+     +++++|+||++|+++...+
T Consensus        16 ~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-----~~~~~Givt~~dl~~~~~~   69 (144)
T 2nyc_A           16 ITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDE-----NGYLINVYEAYDVLGLIKG   69 (144)
T ss_dssp             CBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECT-----TCBEEEEEEHHHHHHHHHT
T ss_pred             CCCCCceEECCCCcHHHHHHHHHHcCcceeeEEcC-----CCcEEEEEcHHHHHHHhcc
Confidence            78888999999999999999999999999999987     5789999999999987654

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=98.08  E-value=3.8e-06  Score=74.27  Aligned_cols=60  Identities=22%  Similarity=0.384  Sum_probs=55.3

Q ss_pred             cccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHh
Q 013262          252 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK  324 (447)
Q Consensus       252 ~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~  324 (447)
                      ..+++++|.+  +++++++++++.++++.|.+++++.+||+|++           |+++|+|+++|+++.+.+
T Consensus        97 ~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-----------g~~vGiit~~dil~~~~~  156 (180)
T 3sl7_A           97 GKVVGDLMTP--SPLVVRDSTNLEDAARLLLETKFRRLPVVDAD-----------GKLIGILTRGNVVRAALQ  156 (180)
T ss_dssp             TCBHHHHSEE--SCCCEETTSBHHHHHHHHTTSTTCEEEEECTT-----------CBEEEEEEHHHHHHHHHH
T ss_pred             cccHHHHhCC--CceEeCCCCcHHHHHHHHHHcCCCEEEEECCC-----------CeEEEEEEHHHHHHHHHH
Confidence            4679999998  88999999999999999999999999999977           899999999999987754

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=98.08  E-value=2e-06  Score=73.06  Aligned_cols=58  Identities=10%  Similarity=0.171  Sum_probs=49.4

Q ss_pred             Ccccccc--CCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHHH
Q 013262          370 DLHPLTN--TTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI  431 (447)
Q Consensus       370 dl~~im~--~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~~  431 (447)
                      .++++|.  +++.++++++++.+|+++|.+.+.+++||+|+   + .++++|+||.+|++++..
T Consensus         4 ~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~---~-~~~~vGivt~~dl~~~~~   63 (136)
T 3lfr_A            4 QVRDIMVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIGE---S-HDDVLGVLLAKDLLPLIL   63 (136)
T ss_dssp             BHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESS---S-TTCEEEEEEGGGGGGGGG
T ss_pred             ChHhccccHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcC---C-CCcEEEEEEHHHHHHHHH
Confidence            3456676  56789999999999999999999999999986   2 268999999999998654

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=98.06  E-value=7.1e-06  Score=70.96  Aligned_cols=59  Identities=14%  Similarity=0.177  Sum_probs=53.8

Q ss_pred             cccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHh
Q 013262          252 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK  324 (447)
Q Consensus       252 ~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~  324 (447)
                      ..+++++| +  ++.++++++++.++++.|.+++.+.+||+|++           |+++|+|++.|++..+..
T Consensus        85 ~~~v~~~m-~--~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~-----------g~~vGivt~~dil~~l~~  143 (153)
T 3oco_A           85 KAKISTIM-R--DIVSVPENMKVPDVMEEMSAHRVPMAIVIDEY-----------GGTSGIITDKDVYEELFG  143 (153)
T ss_dssp             TSBGGGTC-B--CCEEEETTSBHHHHHHHHHHTTCSCEEEECTT-----------SCEEEEECHHHHHHHHHC
T ss_pred             CCcHHHHh-C--CCeEECCCCCHHHHHHHHHHcCCcEEEEEeCC-----------CCEEEEeeHHHHHHHHhc
Confidence            46789999 7  78999999999999999999999999999987           899999999999987654

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=98.05  E-value=3.4e-06  Score=70.81  Aligned_cols=55  Identities=18%  Similarity=0.197  Sum_probs=49.7

Q ss_pred             cCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHH
Q 013262          369 IDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRA  428 (447)
Q Consensus       369 idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~  428 (447)
                      ..++++|.+++.++++++++.++.++|.+.+.+.+||+|+     +++++|+||++|+++
T Consensus         8 ~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-----~~~~~Givt~~dl~~   62 (133)
T 1y5h_A            8 TTARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGD-----DDRLHGMLTDRDIVI   62 (133)
T ss_dssp             CCHHHHSEETCCCEETTSBHHHHHHHHHHHTCSEEEEECG-----GGBEEEEEEHHHHHH
T ss_pred             cCHHHHhcCCceEeCCCCCHHHHHHHHHHhCCCeEEEECC-----CCeEEEEEeHHHHHH
Confidence            3567788888999999999999999999999999999986     578999999999984

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=98.04  E-value=9.6e-06  Score=72.10  Aligned_cols=60  Identities=20%  Similarity=0.073  Sum_probs=52.0

Q ss_pred             cCcccccc--CCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHHHh
Q 013262          369 IDLHPLTN--TTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL  432 (447)
Q Consensus       369 idl~~im~--~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~~~  432 (447)
                      ..++++|.  +.++++++++++.+|+++|.+.+.+++||+|+   + .++++|+||.+|++++..+
T Consensus        36 ~~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~---~-~~~lvGivt~~Dl~~~~~~   97 (173)
T 3ocm_A           36 RSIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRG---S-LDEVVGIGRAKDLVADLIT   97 (173)
T ss_dssp             SCSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESS---S-TTSEEEEEEHHHHHHHHHH
T ss_pred             CCHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeC---C-CCCEEEEEEHHHHHHHHhc
Confidence            45788896  46789999999999999999999999999986   2 2689999999999988654

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=98.03  E-value=8.4e-06  Score=70.77  Aligned_cols=57  Identities=16%  Similarity=0.170  Sum_probs=51.9

Q ss_pred             cCccccccCCCceecCCCCHHHHHHHHHHcCCCE-EEEEeCcccCCCCcEEEEEeHHHHHHHHH
Q 013262          369 IDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRH-LLVVPKYEAAGVSPVVGILTRQDLRAFNI  431 (447)
Q Consensus       369 idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~-LpVVd~~~~~g~~~lvGIITr~DLl~~~~  431 (447)
                      ..++++|.++++++++++++.+|+++|.+.+.+. +||+|+     + +++|+||++|+++...
T Consensus        16 ~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~-----~-~~vGivt~~dl~~~~~   73 (157)
T 1o50_A           16 KDVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARD-----N-KLVGMIPVMHLLKVSG   73 (157)
T ss_dssp             HHHTTSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEET-----T-EEEEEEEHHHHHHHHH
T ss_pred             ccHhhcccCCCceECCCCCHHHHHHHHHhCCCCccEEEEEC-----C-EEEEEEEHHHHHHHHh
Confidence            3577899999999999999999999999999999 999997     4 8999999999998754

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=98.01  E-value=3.6e-06  Score=73.22  Aligned_cols=59  Identities=17%  Similarity=0.232  Sum_probs=51.5

Q ss_pred             cCccccccC--CCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHHH
Q 013262          369 IDLHPLTNT--TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI  431 (447)
Q Consensus       369 idl~~im~~--~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~~  431 (447)
                      ..++++|.+  +++++++++++.+|.++|.+.+.+++||+|+   + .++++|+||.+|++++..
T Consensus        38 ~~v~diM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~---~-~~~lvGivt~~dl~~~~~   98 (156)
T 3oi8_A           38 LEVRDAMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGE---D-KDEVLGILHAKDLLKYMF   98 (156)
T ss_dssp             CBGGGTCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESS---S-TTCEEEEEEGGGGGGGSS
T ss_pred             CCHhheeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcC---C-CCcEEEEEEHHHHHHHHH
Confidence            467889986  6889999999999999999999999999986   2 148999999999987643

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=98.01  E-value=6.1e-06  Score=73.34  Aligned_cols=59  Identities=20%  Similarity=0.171  Sum_probs=51.4

Q ss_pred             cCccccccCC----Ccee--cCCCCHHHHHHHHHHcCCCEEEEE--eCcccCCCCcEEEEEeHHHHHHHHHh
Q 013262          369 IDLHPLTNTT----PYTV--IESMSVAKAMVLFRQVGLRHLLVV--PKYEAAGVSPVVGILTRQDLRAFNIL  432 (447)
Q Consensus       369 idl~~im~~~----p~tV--~~~~sL~~a~~lf~~~gl~~LpVV--d~~~~~g~~~lvGIITr~DLl~~~~~  432 (447)
                      ..++++|.+.    ++++  .+++++.+|.++|.+.+.+.+||+  |+     +++++|+||++|+++....
T Consensus        11 ~~v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~-----~~~lvGiit~~dl~~~~~~   77 (185)
T 2j9l_A           11 TLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRE-----SQRLVGFVLRRDLIISIEN   77 (185)
T ss_dssp             CBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTT-----TCBEEEEEEHHHHHHHHHH
T ss_pred             CcHHHHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECC-----CCeEEEEEEHHHHHHHHHh
Confidence            4566777776    7888  999999999999999999999999  55     5789999999999987664

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=97.97  E-value=9.2e-06  Score=70.37  Aligned_cols=60  Identities=25%  Similarity=0.370  Sum_probs=54.9

Q ss_pred             ccccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHh
Q 013262          251 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK  324 (447)
Q Consensus       251 ~~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~  324 (447)
                      ...+++++|.+  ++.++++++++.++++.|.+++++.+||+| +           |+++|+|+++|+++.+..
T Consensus        76 ~~~~v~~~m~~--~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~-----------g~~~Giit~~dil~~l~~  135 (157)
T 4fry_A           76 KATRVEEIMTA--KVRYVEPSQSTDECMALMTEHRMRHLPVLD-G-----------GKLIGLISIGDLVKSVIA  135 (157)
T ss_dssp             SSCBHHHHSBS--SCCCBCTTSBHHHHHHHHHHHTCSEEEEEE-T-----------TEEEEEEEHHHHHHHHHT
T ss_pred             cccCHHHHcCC--CCcEECCCCcHHHHHHHHHHcCCCEEEEEE-C-----------CEEEEEEEHHHHHHHHHH
Confidence            35789999998  889999999999999999999999999999 5           899999999999987765

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=97.84  E-value=2.2e-05  Score=82.30  Aligned_cols=61  Identities=20%  Similarity=0.330  Sum_probs=55.2

Q ss_pred             ccCccccccCCCceecCC-CCHHHHHHHHHHcCCCEEEEEe-CcccCCCCcEEEEEeHHHHHHHHHhh
Q 013262          368 YIDLHPLTNTTPYTVIES-MSVAKAMVLFRQVGLRHLLVVP-KYEAAGVSPVVGILTRQDLRAFNILT  433 (447)
Q Consensus       368 ~idl~~im~~~p~tV~~~-~sL~~a~~lf~~~gl~~LpVVd-~~~~~g~~~lvGIITr~DLl~~~~~~  433 (447)
                      ...++++|.++++++.++ +++.+|+++|.+.+++++||+| +     +++++|+||++||++.+...
T Consensus       383 ~~~V~diM~~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~-----~g~lvGiVt~~Dll~~l~~~  445 (527)
T 3pc3_A          383 SLAIAELELPAPPVILKSDATVGEAIALMKKHRVDQLPVVDQD-----DGSVLGVVGQETLITQIVSM  445 (527)
T ss_dssp             TSBGGGGCCCCCSCCEETTCBHHHHHHHHHHHTCSEEEEECTT-----TCCEEEEEEHHHHHHHHHHH
T ss_pred             CCcHHHhCcCCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECC-----CCEEEEEEEHHHHHHHHHhc
Confidence            356889999999999999 9999999999999999999999 5     46899999999999887654

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=97.73  E-value=3e-05  Score=74.28  Aligned_cols=60  Identities=17%  Similarity=0.317  Sum_probs=53.7

Q ss_pred             cccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHh
Q 013262          252 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK  324 (447)
Q Consensus       252 ~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~  324 (447)
                      ..+++++|.+  +++++++++++.++++.|.+++.+.+||||++           |+++|+||.+|++..+..
T Consensus       198 ~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-----------g~lvGivT~~Dil~~i~~  257 (278)
T 2yvy_A          198 RTRVAEIMNP--KVVYVRTDTDQEEVARLMADYDFTVLPVVDEE-----------GRLVGIVTVDDVLDVLEA  257 (278)
T ss_dssp             TCBSTTTSBS--SCCCEETTSBHHHHHHHHHHHTCSEEEEECTT-----------SBEEEEEEHHHHHHHC--
T ss_pred             CCcHHHHhCC--CCeEEeCCCCHHHHHHHHHhcCCCEEEEEeCC-----------CeEEEEEEHHHHHHHHHH
Confidence            4678999988  88999999999999999999999999999987           899999999999876543

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=97.72  E-value=3.4e-05  Score=74.24  Aligned_cols=60  Identities=13%  Similarity=0.307  Sum_probs=54.9

Q ss_pred             cccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHh
Q 013262          252 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK  324 (447)
Q Consensus       252 ~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~  324 (447)
                      ..+++++|.+  +++++++++++.++.+.|.+++.+.+||||++           |+++|+||.+|++..+..
T Consensus       200 ~~~v~~im~~--~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~-----------g~lvGiIT~~Dil~~i~~  259 (286)
T 2oux_A          200 DTLIADILNE--RVISVHVGDDQEDVAQTIRDYDFLAVPVTDYD-----------DHLLGIVTVDDIIDVIDD  259 (286)
T ss_dssp             TSBHHHHSBS--CCCCEETTSBHHHHHHHHHHHTCSEEEEECTT-----------CBEEEEEEHHHHHHHHHH
T ss_pred             CCcHHHHcCC--CCeeecCCCCHHHHHHHHHHcCCcEEEEEcCC-----------CeEEEEEEHHHHHHHHHH
Confidence            4678999998  88999999999999999999999999999987           899999999999987754

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=97.59  E-value=8.2e-05  Score=76.81  Aligned_cols=60  Identities=17%  Similarity=0.317  Sum_probs=55.4

Q ss_pred             cccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHh
Q 013262          252 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK  324 (447)
Q Consensus       252 ~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~  324 (447)
                      +.+++++|++  +++++++++++.++.+.|++++.+.+||||++           |+++|+||.+|+.+.+..
T Consensus       218 ~~~v~dim~~--~~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe~-----------g~lvGiIT~~Dil~~i~~  277 (473)
T 2zy9_A          218 RTRVAEIMNP--KVVYVRTDTDQEEVARLMADYDFTVLPVVDEE-----------GRLVGIVTVDDVLDVLEA  277 (473)
T ss_dssp             TSBGGGTSBS--SCCCEESSSBHHHHHHHHHHHTCSEEEEECTT-----------SBEEEEEEHHHHHHHHHH
T ss_pred             CCcHHHHhCC--CCeEEeCCCcHHHHHHHHHhcCCcEEEEEcCC-----------CEEEEEEehHhhHHHHHH
Confidence            5679999988  89999999999999999999999999999987           899999999999987754

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=97.53  E-value=2.8e-05  Score=80.92  Aligned_cols=61  Identities=15%  Similarity=0.285  Sum_probs=0.0

Q ss_pred             cccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHH
Q 013262          252 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALK  323 (447)
Q Consensus       252 ~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~  323 (447)
                      +.+++|+|++..+++++++++++.++++.|.+++++.+||||++           ++++|+|+++|+++.+.
T Consensus       160 ~~~V~diM~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe~-----------g~lvGiIT~~Dil~~~~  220 (503)
T 1me8_A          160 ETKVSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDD-----------QHLRYIVFRKDYDRSQV  220 (503)
T ss_dssp             ------------------------------------------------------------------------
T ss_pred             cCcHHHHhCCCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcCC-----------CeEEEEEEecHHHHhhh
Confidence            46799999982129999999999999999999999999999987           89999999999987554

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=97.41  E-value=0.00052  Score=71.40  Aligned_cols=61  Identities=16%  Similarity=0.297  Sum_probs=54.6

Q ss_pred             cccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHh
Q 013262          252 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK  324 (447)
Q Consensus       252 ~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~  324 (447)
                      +.+++++|++ .+++++++++++.++++.|.+++.+.+||||++           ++++|+|+++|+++.+..
T Consensus       174 ~~~V~~vM~~-~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe~-----------g~l~GiIT~~Dil~~~~~  234 (511)
T 3usb_A          174 SIKISDVMTK-EQLITAPVGTTLSEAEKILQKYKIEKLPLVDNN-----------GVLQGLITIKDIEKVIEF  234 (511)
T ss_dssp             SSBHHHHCCC-CCCCCEETTCCHHHHHHHHHHHTCSEEEEECTT-----------SBEEEEEEHHHHHHHHHC
T ss_pred             CCcHHHhccc-CCCEEECCCCCHHHHHHHHHHcCCCEEEEEeCC-----------CCEeeeccHHHHHHhhhc
Confidence            5678999985 267899999999999999999999999999987           999999999999887654

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=97.14  E-value=0.00041  Score=71.93  Aligned_cols=52  Identities=31%  Similarity=0.393  Sum_probs=46.4

Q ss_pred             ccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHH
Q 013262          371 LHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLR  427 (447)
Q Consensus       371 l~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl  427 (447)
                      .+++|..+|+++++++++.++.++|.+.+.+.+||+|+     +++++|+||++|+.
T Consensus        91 ~~~~m~~d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~-----~~~lvGiVt~rDL~  142 (496)
T 4fxs_A           91 FEAGVVTHPVTVRPEQTIADVMELTHYHGFAGFPVVTE-----NNELVGIITGRDVR  142 (496)
T ss_dssp             CCC--CBCCCCBCSSSBHHHHHHHHTSSCCCEEEEECS-----SSBEEEEEEHHHHT
T ss_pred             cccccccCceEECCCCCHHHHHHHHHHcCCcEEEEEcc-----CCEEEEEEEHHHHh
Confidence            45678899999999999999999999999999999997     57899999999996

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=96.87  E-value=0.0014  Score=67.92  Aligned_cols=53  Identities=21%  Similarity=0.295  Sum_probs=48.6

Q ss_pred             ccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEe--CcccCCCCcEEEEEeHHHHHH
Q 013262          371 LHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVP--KYEAAGVSPVVGILTRQDLRA  428 (447)
Q Consensus       371 l~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd--~~~~~g~~~lvGIITr~DLl~  428 (447)
                      ++++|.++++++++++++.++.++|.+.+.+.+||+|  +     +++++|+||.+|++.
T Consensus        92 ~~~im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~-----~~~lvGivt~~Dl~~  146 (491)
T 1zfj_A           92 SENGVIIDPFFLTPEHKVSEAEELMQRYRISGVPIVETLA-----NRKLVGIITNRDMRF  146 (491)
T ss_dssp             HTTTTSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTT-----TCBEEEEEEHHHHHH
T ss_pred             HHhcCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCC-----CCEEEEEEEHHHHhh
Confidence            4668889999999999999999999999999999998  5     578999999999985

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=96.85  E-value=0.00017  Score=74.19  Aligned_cols=58  Identities=21%  Similarity=0.332  Sum_probs=0.0

Q ss_pred             cccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHH
Q 013262          252 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLAL  322 (447)
Q Consensus       252 ~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L  322 (447)
                      +.+++++|++  +++++++..+++++.++|.+++...+||||++           ++|+|+||++|+.+.-
T Consensus       199 ~~~V~evMT~--~lvt~~~~~~leeA~~iL~~~kieklpVVd~~-----------g~LvGlIT~kDi~k~~  256 (556)
T 4af0_A          199 ETPIKSVMTT--EVVTGSSPITLEKANSLLRETKKGKLPIVDSN-----------GHLVSLVARSDLLKNQ  256 (556)
T ss_dssp             -----------------------------------------------------------------------
T ss_pred             ceEhhhhccc--ceEEecCCCCHHHHHHHHHHccccceeEEccC-----------CcEEEEEEechhhhhh
Confidence            4679999999  89999999999999999999999999999998           9999999999997643

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=96.74  E-value=0.00024  Score=73.56  Aligned_cols=58  Identities=29%  Similarity=0.382  Sum_probs=0.0

Q ss_pred             cccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHH
Q 013262          252 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLAL  322 (447)
Q Consensus       252 ~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L  322 (447)
                      +.+++++|++  +++++++++++.++++.|.+++.+.+||||++           ++++|+|+++|+++.+
T Consensus       149 ~~~v~~im~~--~~~~v~~~~~l~eal~~m~~~~~~~lpVVde~-----------g~lvGiiT~~Dil~~~  206 (486)
T 2cu0_A          149 GKLVKELMTK--EVITVPESIEVEEALKIMIENRIDRLPVVDER-----------GKLVGLITMSDLVARK  206 (486)
T ss_dssp             -----------------------------------------------------------------------
T ss_pred             CCCHHHHccC--CCeEECCcCcHHHHHHHHHHcCCCEEEEEecC-----------CeEEEEEEHHHHHHhh
Confidence            4678999998  88899999999999999999999999999987           8999999999998754

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=96.73  E-value=0.00025  Score=73.53  Aligned_cols=54  Identities=30%  Similarity=0.350  Sum_probs=1.0

Q ss_pred             CccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHH
Q 013262          370 DLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRA  428 (447)
Q Consensus       370 dl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~  428 (447)
                      .++++|.++++++++++++.++.++|.+.+.+.+||+|+     +++++|+||++|+.+
T Consensus        96 ~~~~iM~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~-----~~~lvGivt~~Dl~~  149 (494)
T 1vrd_A           96 KTENGIIYDPITVTPDMTVKEAIDLMAEYKIGGLPVVDE-----EGRLVGLLTNRDVRF  149 (494)
T ss_dssp             TC---------------------------------------------------------
T ss_pred             hHhhcCccCCeEECCCCCHHHHHHHHHHcCceEEEEEcC-----CCEEEEEEEHHHHHh
Confidence            456788899999999999999999999999999999987     568999999999975

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=96.69  E-value=0.00026  Score=73.30  Aligned_cols=62  Identities=19%  Similarity=0.170  Sum_probs=0.4

Q ss_pred             cccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHh
Q 013262          252 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK  324 (447)
Q Consensus       252 ~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~  324 (447)
                      +.+++++|++..+++++++++++.+++++|.+++.+.+||||++           ++++|+|+++|+++....
T Consensus       146 ~~~V~~vMtp~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~-----------g~lvGiIT~~Dil~~~~~  207 (490)
T 4avf_A          146 GDTVAAIMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVDEN-----------FYLRGLVTFRDIEKAKTY  207 (490)
T ss_dssp             ------------------------------------------------------------------------C
T ss_pred             CCcHHHHhccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEcCC-----------CcEEEEEehHHhhhhccC
Confidence            56799999832248899999999999999999999999999987           899999999999886543

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=96.09  E-value=0.00091  Score=69.70  Aligned_cols=57  Identities=19%  Similarity=0.240  Sum_probs=27.9

Q ss_pred             CccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCC-CCcEEEEEeHHHHHHH
Q 013262          370 DLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAG-VSPVVGILTRQDLRAF  429 (447)
Q Consensus       370 dl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g-~~~lvGIITr~DLl~~  429 (447)
                      .+.++|.++|+++++++++.++.++|.+.+.+.+||+|+   +. +++++|+||++|+.+.
T Consensus       109 ~~~~im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~---~~~~~~lvGiVt~~Dl~~~  166 (514)
T 1jcn_A          109 NFEQGFITDPVVLSPSHTVGDVLEAKMRHGFSGIPITET---GTMGSKLVGIVTSRDIDFL  166 (514)
T ss_dssp             TCCTTSCSSCCCCCC-----------------CEESCC-----------CCEECTTTTC--
T ss_pred             hhhhccccCCEEECCCCCHHHHHHHHHhcCCCEEEEEeC---CCcCCEEEEEEEHHHHHhh
Confidence            456788889999999999999999999999999999985   10 3689999999998763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	447
d1otsa_	444	f.20.1.1 (A:) Clc chloride channel {Escherichia co	2e-21
d2j9la1	169	d.37.1.1 (A:578-746) Chloride channel protein 5, C	5e-07
d2d4za3	160	d.37.1.1 (A:527-606,A:691-770) Chloride channel pr	1e-05
d2ooxe1	179	d.37.1.1 (E:3-181) Uncharacterized protein C1556.0	2e-05
d2yzqa1	156	d.37.1.1 (A:123-278) Uncharacterized protein PH178	0.001

>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli [TaxId: 562]} Length = 444

class: Membrane and cell surface proteins and peptides
fold: Clc chloride channel
superfamily: Clc chloride channel
family: Clc chloride channel
domain: Clc chloride channel
species: Escherichia coli [TaxId: 562]

 Score = 93.7 bits (232), Expect = 2e-21
 Identities = 33/133 (24%), Positives = 61/133 (45%), Gaps = 4/133 (3%)

Query: 107 NIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGS 166
           N+    T   F    ++  F+   I  L+ F    P G+F P++ +G+  G   GM    
Sbjct: 302 NLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVE 361

Query: 167 Y---TNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGD 223
                +++ G +A+ G  +L+A S+R  ++  ++ LE+T+N  L+   +I  L A  +  
Sbjct: 362 LFPQYHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLAQ 421

Query: 224 SFNP-SIYEIILE 235
                 +Y  IL 
Sbjct: 422 FTGGKPLYSAILA 434

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.6 bits (112), Expect = 5e-07
 Identities = 30/167 (17%), Positives = 63/167 (37%), Gaps = 29/167 (17%)

Query: 260 DAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLV 319
           +     +       V  +  ++  TT++GFPV+             +  L G +LR  L+
Sbjct: 14  NDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVS---------RESQRLVGFVLRRDLI 64

Query: 320 LALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTP 379
           ++++     Q+               V         E            + L  + + +P
Sbjct: 65  ISIENARKKQD--------------GVVSTSIIYFTEHSPPLPPYTPPTLKLRNILDLSP 110

Query: 380 YTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDL 426
           +TV +   +   + +FR++GLR  LV           ++GI+T++D+
Sbjct: 111 FTVTDLTPMEIVVDIFRKLGLRQCLVTHNGR------LLGIITKKDV 151

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 160

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 43.1 bits (100), Expect = 1e-05
 Identities = 33/183 (18%), Positives = 61/183 (33%), Gaps = 34/183 (18%)

Query: 248 PWMR----TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLA 303
            W       + VG+++     V +++       ++ VLR T    FP +D         +
Sbjct: 2   SWSSANKYNIQVGDIM--VRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGS 59

Query: 304 NVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSE 363
              TE+ GL+ R       +    +        WE REK   V                 
Sbjct: 60  IDRTEVEGLLQRRISAYRRQPFEEMLTLEEIYRWEQREKNVVVNFET------------- 106

Query: 364 EMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 423
                       + +P+ ++E  S+ K   LF  +GL    V    +      +VG++  
Sbjct: 107 ---------CRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTSMGK------LVGVVAL 151

Query: 424 QDL 426
            ++
Sbjct: 152 AEI 154

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 179

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 43.1 bits (100), Expect = 2e-05
 Identities = 20/177 (11%), Positives = 44/177 (24%), Gaps = 29/177 (16%)

Query: 250 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATEL 309
           +R+ T  +++     +I       V   + +L        P+ D                
Sbjct: 17  IRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDS---------EANKFA 67

Query: 310 HGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYI 369
             L +   + +               E +                 E            I
Sbjct: 68  GLLTMADFVNVIKYYYQSSSFPEAIAEIDKFRLLGL---------REVERKIGAIPPETI 118

Query: 370 DLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDL 426
            +HP             S+  A +   +   R + ++      G   +V +LT+  +
Sbjct: 119 YVHP-----------MHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRI 164

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 156

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 36.9 bits (84), Expect = 0.001
 Identities = 17/176 (9%), Positives = 47/176 (26%), Gaps = 26/176 (14%)

Query: 251 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELH 310
           + + +      +  V  +     +   +  L  +     PV+D               + 
Sbjct: 2   KGVEIEPYY--QRYVSIVWEGTPLKAALKALLLSNSMALPVVDSE--------GNLVGIV 51

Query: 311 GLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYID 370
                      ++     +    +EE  + E    +   + E ++    V          
Sbjct: 52  DETDLLRDSEIVRIMKSTELAASSEEEWILESHPTLLFEKFELQLPNKPV---------- 101

Query: 371 LHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDL 426
              +           M+V +  +   +  +  L V+          ++G++   DL
Sbjct: 102 -AEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGD-----LIGLIRDFDL 151

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	447
d1otsa_	444	Clc chloride channel {Escherichia coli [TaxId: 562	99.93
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	99.83
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	99.8
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	99.8
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.79
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	99.78
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.78
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	99.78
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.78
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.77
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.77
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	99.76
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	99.76
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	99.76
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	99.76
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	99.76
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	99.75
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	99.73
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	99.73
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.71
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	99.7
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	99.7
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	99.7
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	99.69
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	99.67
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	99.66
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	99.63
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	98.58
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	98.56
d1otsa_	444	Clc chloride channel {Escherichia coli [TaxId: 562	98.56
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	98.55
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	98.54
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	98.47
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	98.43
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	98.42
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	98.4
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	98.39
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	98.39
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	98.36
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	98.35
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	98.34
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	98.32
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	98.29
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	98.29
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	98.29
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	98.29
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	98.23
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	98.15
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	98.1
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	98.05
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	98.05
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	97.9
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	97.63
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	97.58

>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Clc chloride channel
superfamily: Clc chloride channel
family: Clc chloride channel
domain: Clc chloride channel
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=2.7e-26  Score=234.41  Aligned_cols=134  Identities=23%  Similarity=0.424  Sum_probs=122.0

Q ss_pred             CChHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHhhcc---CCcchHHH
Q 013262           99 TTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSY---TNIDQGLY  175 (447)
Q Consensus        99 ~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~k~~~~~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~---~~~~~~~~  175 (447)
                      +++++.++.+++.    ++++..+++++++|+++|++|+|+|.|||+|+|++++||++|+++|.+++..   ..++|+.|
T Consensus       298 g~G~~~~~~~~~~----~~~~~~l~~~~~~K~~~t~~t~~~G~~GG~f~P~l~iGa~~G~~~~~~~~~~~~~~~~~~~~~  373 (444)
T d1otsa_         298 GGGFNLIPIATAG----NFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFPQYHLEAGTF  373 (444)
T ss_dssp             SCSTTHHHHHHHT----CSCHHHHHHHHHHHHHHHHHHHHTTCSSBSHHHHHHHHHHHHHHHHHHHHHHCGGGTCCHHHH
T ss_pred             CCchHHHHHHhcC----CcchHHHHHHHHHHHHHHHHHhhcCCCCCeehHHHHHHHHHHHHHHHHHHHhCCcccCCHHHH
Confidence            3455667777764    3667888999999999999999999999999999999999999999998753   35789999


Q ss_pred             HHHHHHHHHHhhhchhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhhc-CCchHHHHHHh
Q 013262          176 AVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSF-NPSIYEIILEL  236 (447)
Q Consensus       176 a~~G~aa~~~g~~~~p~s~~vi~~E~t~~~~~~~p~~ia~~va~~v~~~l-~~sIYd~~l~~  236 (447)
                      +++||+|+++|++|+|+|+++|++|+||++++++|+|+++++|+++++.+ ++|+||.++++
T Consensus       374 alvGmaa~~a~~~~~Plta~vl~~Eltg~~~~~~p~~ia~~~a~~v~~~~~~~siY~~~l~~  435 (444)
T d1otsa_         374 AIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLAQFTGGKPLYSAILAR  435 (444)
T ss_dssp             HHHHHTHHHHHTSCCHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHTTTCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999 78999999885

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.83  E-value=5.8e-20  Score=160.39  Aligned_cols=150  Identities=21%  Similarity=0.308  Sum_probs=112.9

Q ss_pred             ccccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhh
Q 013262          251 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQE  330 (447)
Q Consensus       251 ~~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~  330 (447)
                      .+++|+|+|++  +++++++++++.+++++|.+++++++||+|++         +++.++|+++..|+..++.+......
T Consensus         9 ~~~~V~diM~~--~~~~v~~~~tv~e~~~~l~~~~~~~~PVvd~~---------~~~~lvg~is~~dl~~~l~~~~~~~~   77 (160)
T d2d4za3           9 YNIQVGDIMVR--DVTSIASTSTYGDLLHVLRQTKLKFFPFVDTP---------DTNTLLGSIDRTEVEGLLQRRISAYR   77 (160)
T ss_dssp             SSCBTTSSSBS--SCCCEETTCBHHHHHHHHHHCCCSEEEEESCT---------TTCBEEEEEEHHHHHHHHHHHHHTTS
T ss_pred             cceEHHHhcCC--CCeEECCCCcHHHHHHHHHhcCCCcccccccc---------ccccccccchHHHHHHHHhhcccccc
Confidence            37899999999  99999999999999999999999999999975         34789999999999988776432211


Q ss_pred             cccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcc
Q 013262          331 KRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYE  410 (447)
Q Consensus       331 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~  410 (447)
                      .....     ......+.....        ..........+.++|++.|++|.+++|+.+++++|.+.+++++||+|+  
T Consensus        78 ~~~~~-----~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~tv~~~~~l~~~~~~m~~~~v~~l~V~d~--  142 (160)
T d2d4za3          78 RQPFE-----EMLTLEEIYRWE--------QREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTSM--  142 (160)
T ss_dssp             SSCCC-----SCCBHHHHHHHH--------HHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEET--
T ss_pred             ccchh-----hccccchhhhhh--------hhhcccccceeeecccCCCEEEcCCCCHHHHHHHHHHcCCeEEEEEEC--
Confidence            10000     000000000000        000011233467899999999999999999999999999999999874  


Q ss_pred             cCCCCcEEEEEeHHHHHHHH
Q 013262          411 AAGVSPVVGILTRQDLRAFN  430 (447)
Q Consensus       411 ~~g~~~lvGIITr~DLl~~~  430 (447)
                          |+++||||++||+++.
T Consensus       143 ----g~lvGiIt~~Di~k~I  158 (160)
T d2d4za3         143 ----GKLVGVVALAEIQAAI  158 (160)
T ss_dssp             ----TEEEEEEEHHHHHHHH
T ss_pred             ----CEEEEEEEHHHHHHHh
Confidence                6899999999999975

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.80  E-value=3.9e-19  Score=149.82  Aligned_cols=125  Identities=23%  Similarity=0.304  Sum_probs=109.0

Q ss_pred             cccccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhh
Q 013262          250 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ  329 (447)
Q Consensus       250 l~~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~  329 (447)
                      +++.+|+|+|++  +++++++++++.++.+.|.+++++++||+|+            ++++|+|+.+|+.+.+.+..   
T Consensus         1 l~~~~V~d~m~~--~~v~v~~~~tl~~a~~~m~~~~~~~~pV~d~------------~~~~Givt~~dl~~~~~~~~---   63 (127)
T d2ef7a1           1 MEEEIVKEYMKT--QVISVTKDAKLNDIAKVMTEKNIGSVIVVDG------------NKPVGIITERDIVKAIGKGK---   63 (127)
T ss_dssp             CCCCBGGGTSBC--SCCEEETTCBHHHHHHHHHHHTCSEEEEEET------------TEEEEEEEHHHHHHHHHTTC---
T ss_pred             CCccCHHHhCCC--CCeEECCcCcHHHHHHHHHHcCCceEEeecc------------cchhhhcchhHHHHHHHhhc---
Confidence            356789999999  9999999999999999999999999999986            68999999999987654321   


Q ss_pred             hcccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCc
Q 013262          330 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKY  409 (447)
Q Consensus       330 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~  409 (447)
                                                          .....+.++|++++.++++++++.+|.++|.+.+++++||+|+ 
T Consensus        64 ------------------------------------~~~~~v~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-  106 (127)
T d2ef7a1          64 ------------------------------------SLETKAEEFMTASLITIREDSPITGALALMRQFNIRHLPVVDD-  106 (127)
T ss_dssp             ------------------------------------CTTCBGGGTSEECCCCEETTSBHHHHHHHHHHHTCSEEEEECT-
T ss_pred             ------------------------------------cccchhhhhhhhhccccccccchhHHHHHHHHcCceEEEEEeC-
Confidence                                                0113466788899999999999999999999999999999987 


Q ss_pred             ccCCCCcEEEEEeHHHHHHHHHh
Q 013262          410 EAAGVSPVVGILTRQDLRAFNIL  432 (447)
Q Consensus       410 ~~~g~~~lvGIITr~DLl~~~~~  432 (447)
                          +|+++|+||+.|++++..+
T Consensus       107 ----~~~lvGiit~~Dll~~i~~  125 (127)
T d2ef7a1         107 ----KGNLKGIISIRDITRAIDD  125 (127)
T ss_dssp             ----TSCEEEEEEHHHHHHHHHH
T ss_pred             ----CCeEEEEEEHHHHHHHHHh
Confidence                6789999999999998754

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=99.80  E-value=1.4e-19  Score=155.11  Aligned_cols=132  Identities=17%  Similarity=0.260  Sum_probs=110.0

Q ss_pred             ccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcc
Q 013262          253 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKR  332 (447)
Q Consensus       253 l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~  332 (447)
                      ++|+|+|++  +++++++++++.++++.|.+++++.+||+|++           ++++|+|+.+|++..+.+.....   
T Consensus         2 i~v~diM~~--~~~~v~~~~tl~~a~~~m~~~~~~~lpVvd~~-----------~~~~Giit~~dl~~~~~~~~~~~---   65 (139)
T d2o16a3           2 IKVEDMMTR--HPHTLLRTHTLNDAKHLMEALDIRHVPIVDAN-----------KKLLGIVSQRDLLAAQESSLQRS---   65 (139)
T ss_dssp             CBGGGTSEE--SCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-----------CBEEEEEEHHHHHHHHHHHCC-----
T ss_pred             EEHHHhCcC--CCeEECCcCCHHHHHHHHHHcCCCeeeeeccc-----------ccccccccHHHHHHHHHhhhhhh---
Confidence            689999999  89999999999999999999999999999987           89999999999988665421000   


Q ss_pred             cchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccC
Q 013262          333 RTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAA  412 (447)
Q Consensus       333 ~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~  412 (447)
                                ..                 ........++.++|+++++++++++++.+|.++|.+.+++++||+|+    
T Consensus        66 ----------~~-----------------~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~----  114 (139)
T d2o16a3          66 ----------AQ-----------------GDSLAFETPLFEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAK----  114 (139)
T ss_dssp             ----------------------------------CCCBHHHHSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEET----
T ss_pred             ----------hc-----------------ccccccccchhHhhccccccccccchHHHHHHHHHHcCceEEEEEEC----
Confidence                      00                 00011234577889999999999999999999999999999999985    


Q ss_pred             CCCcEEEEEeHHHHHHHHHhh
Q 013262          413 GVSPVVGILTRQDLRAFNILT  433 (447)
Q Consensus       413 g~~~lvGIITr~DLl~~~~~~  433 (447)
                        |+++|+||++|+++++.+.
T Consensus       115 --~~lvGiit~~Dil~~~~~~  133 (139)
T d2o16a3         115 --DVLVGIITDSDFVTIAINL  133 (139)
T ss_dssp             --TEEEEEECHHHHHHHHHHH
T ss_pred             --CEEEEEEEHHHHHHHHHHH
Confidence              5799999999999998764

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.79  E-value=3.2e-19  Score=153.37  Aligned_cols=126  Identities=18%  Similarity=0.220  Sum_probs=109.0

Q ss_pred             ccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcc
Q 013262          253 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKR  332 (447)
Q Consensus       253 l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~  332 (447)
                      ++|+|+|++  ++.++++++++.++++.|.+++++.+||+|++           ++++|+|+..|+.+.+....    . 
T Consensus         3 m~v~dim~~--~~~~v~~~~tl~~a~~~m~~~~~~~~~V~d~~-----------~~~~Giit~~di~~~~~~~~----~-   64 (142)
T d1pvma4           3 MRVEKIMNS--NFKTVNWNTTVFDAVKIMNENHLYGLVVKDDN-----------GNDVGLLSERSIIKRFIPRN----K-   64 (142)
T ss_dssp             CBGGGTSBT--TCCEEETTCBHHHHHHHHHHHTCCEEEEECTT-----------SCEEEEEEHHHHHHHTGGGC----C-
T ss_pred             EEHHHhCCC--CCcEECCcCcHHHHHHHHHHCCCceEeeeccC-----------CcccceEEeechhhhhhhhc----c-
Confidence            689999999  99999999999999999999999999999987           89999999999976432210    0 


Q ss_pred             cchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccC
Q 013262          333 RTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAA  412 (447)
Q Consensus       333 ~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~  412 (447)
                                                      ......++++|+++++++++++++.+|+++|.+.+++++||+|+    
T Consensus        65 --------------------------------~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~----  108 (142)
T d1pvma4          65 --------------------------------KPDEVPIRLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDD----  108 (142)
T ss_dssp             --------------------------------CGGGSBGGGTSBSSCCEEETTCBHHHHHHHHHHHTCSEEEEECT----
T ss_pred             --------------------------------cccccccccccccccccccchhhHHHHHHHHHHcCCcEEEEEec----
Confidence                                            00124577889999999999999999999999999999999997    


Q ss_pred             CCCcEEEEEeHHHHHHHHHhh
Q 013262          413 GVSPVVGILTRQDLRAFNILT  433 (447)
Q Consensus       413 g~~~lvGIITr~DLl~~~~~~  433 (447)
                       +|+++|+||++|+++++.+.
T Consensus       109 -~g~l~Giit~~Dil~~l~~~  128 (142)
T d1pvma4         109 -PGRVVGIVTLTDLSRYLSRA  128 (142)
T ss_dssp             -TCCEEEEEEHHHHTTTSCHH
T ss_pred             -CCEEEEEEEHHHHHHHHhhh
Confidence             57899999999999976554

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.78  E-value=1.6e-19  Score=151.38  Aligned_cols=120  Identities=18%  Similarity=0.299  Sum_probs=101.4

Q ss_pred             cccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhccc
Q 013262          254 TVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRR  333 (447)
Q Consensus       254 ~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~  333 (447)
                      +|+|+|++  +++++++++++.++++.|.+++++++||+|++           ++++|+|+.+|+...+.......    
T Consensus         2 t~~diM~~--~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~-----------~~~~Giit~~Di~~~~~~~~~~~----   64 (123)
T d1y5ha3           2 TARDIMNA--GVTCVGEHETLTAAAQYMREHDIGALPICGDD-----------DRLHGMLTDRDIVIKGLAAGLDP----   64 (123)
T ss_dssp             CHHHHSEE--TCCCEETTSBHHHHHHHHHHHTCSEEEEECGG-----------GBEEEEEEHHHHHHTTGGGTCCT----
T ss_pred             CHHHhcCC--CCcEECCcCcHHHHHHHHHHcCCCceEEEecc-----------chhhhhhhhhhHhhhhhhcCCCc----
Confidence            78999999  99999999999999999999999999999987           89999999999965322110000    


Q ss_pred             chhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCC
Q 013262          334 TEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAG  413 (447)
Q Consensus       334 ~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g  413 (447)
                                                       ....+.++|.++++++++++++.+|+++|.+.+++++||+|+     
T Consensus        65 ---------------------------------~~~~v~~im~~~~~~v~~~~~~~~~~~~m~~~~~~~lpVvd~-----  106 (123)
T d1y5ha3          65 ---------------------------------NTATAGELARDSIYYVDANASIQEMLNVMEEHQVRRVPVISE-----  106 (123)
T ss_dssp             ---------------------------------TTSBHHHHHTTCCCCEETTCCHHHHHHHHHHHTCSEEEEEET-----
T ss_pred             ---------------------------------ccceEEEEeeccceeeeecchHHHHHHHHHHcCceEEEEEEC-----
Confidence                                             012244567789999999999999999999999999999985     


Q ss_pred             CCcEEEEEeHHHHHHH
Q 013262          414 VSPVVGILTRQDLRAF  429 (447)
Q Consensus       414 ~~~lvGIITr~DLl~~  429 (447)
                       |+++|+||++|++++
T Consensus       107 -~~lvGiit~~Dil~~  121 (123)
T d1y5ha3         107 -HRLVGIVTEADIARH  121 (123)
T ss_dssp             -TEEEEEEEHHHHHHT
T ss_pred             -CEEEEEEEHHHHHhh
Confidence             579999999999985

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.78  E-value=1.3e-19  Score=151.79  Aligned_cols=119  Identities=20%  Similarity=0.268  Sum_probs=90.0

Q ss_pred             ccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcc
Q 013262          253 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKR  332 (447)
Q Consensus       253 l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~  332 (447)
                      ++|+|+|.+  +++++++++++.++++.|.+++++++||+|++           |+++|+|+.+|++.....        
T Consensus         1 m~v~diM~~--~~v~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~-----------~~~~G~it~~dl~~~~~~--------   59 (122)
T d2yzqa2           1 MRVKTIMTQ--NPVTITLPATRNYALELFKKYKVRSFPVVNKE-----------GKLVGIISVKRILVNPDE--------   59 (122)
T ss_dssp             CBHHHHSEE--SCCCEESSCC------------CCEEEEECTT-----------CCEEEEEESSCC--------------
T ss_pred             CCcccccCC--CCEEECCcCcHHHHHHHHHHcCCcEEEEEecc-----------ccchhhhhcchhhhhhcc--------
Confidence            578999999  89999999999999999999999999999987           899999999888642110        


Q ss_pred             cchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccC
Q 013262          333 RTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAA  412 (447)
Q Consensus       333 ~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~  412 (447)
                                                          ..+.++|.++++++++++++.+++++|.+++.+++||||+    
T Consensus        60 ------------------------------------~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~----   99 (122)
T d2yzqa2          60 ------------------------------------EQLAMLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDS----   99 (122)
T ss_dssp             ----------------------------------------CCCBSCCCEEETTSBHHHHHHHHHHHTCSEEEEECT----
T ss_pred             ------------------------------------cchhhccccceeecchhhHHHHHHHHHHHcCcEEEEEEeC----
Confidence                                                1355678899999999999999999999999999999997    


Q ss_pred             CCCcEEEEEeHHHHHHHHHhh
Q 013262          413 GVSPVVGILTRQDLRAFNILT  433 (447)
Q Consensus       413 g~~~lvGIITr~DLl~~~~~~  433 (447)
                       +|+++|+||++|+++++.++
T Consensus       100 -~~~liGiit~~dil~~~~~~  119 (122)
T d2yzqa2         100 -KGKPVGILTVGDIIRRYFAK  119 (122)
T ss_dssp             -TSCEEEEEEHHHHHHHTTTT
T ss_pred             -CCEEEEEEEHHHHHHHHHhH
Confidence             67899999999999877654

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.78  E-value=1.1e-18  Score=147.96  Aligned_cols=126  Identities=10%  Similarity=0.183  Sum_probs=108.7

Q ss_pred             cccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhc
Q 013262          252 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEK  331 (447)
Q Consensus       252 ~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~  331 (447)
                      ..+|+|+|++  +++++++++++.++++.|.+++++.+||+|++           ++++|+|+..|+++.+.....    
T Consensus         4 ~~pV~~im~~--~~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd~~-----------~~~~Giit~~di~~~~~~~~~----   66 (132)
T d2yzia1           4 KAPIKVYMTK--KLLGVKPSTSVQEASRLMMEFDVGSLVVINDD-----------GNVVGFFTKSDIIRRVIVPGL----   66 (132)
T ss_dssp             TSBGGGTCBC--CCCEECTTSBHHHHHHHHHHHTCSEEEEECTT-----------SCEEEEEEHHHHHHHTTTTCC----
T ss_pred             CCcHHHHcCC--CCeEECCcCcHHHHHHHHHHcCCcEEEEeccc-----------ceeeeeeeHHHHHHHHhhccC----
Confidence            3579999999  99999999999999999999999999999987           899999999999764432110    


Q ss_pred             ccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCccc
Q 013262          332 RRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEA  411 (447)
Q Consensus       332 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~  411 (447)
                                                        .....++++|.+++.++++++++.+++++|.+.+.+++||+++   
T Consensus        67 ----------------------------------~~~~~v~~im~~~~~~v~~~~~~~~~~~~m~~~~~~~l~V~~~---  109 (132)
T d2yzia1          67 ----------------------------------PYDIPVERIMTRNLITANVNTPLGEVLRKMAEHRIKHILIEEE---  109 (132)
T ss_dssp             ----------------------------------CTTSBGGGTCBCSCCEEETTSBHHHHHHHHHHHTCSEEEEEET---
T ss_pred             ----------------------------------ccceeEeecccccccccCcchHHHHHHHHHHHcCCCEEEEEEC---
Confidence                                              0123577889999999999999999999999999999998763   


Q ss_pred             CCCCcEEEEEeHHHHHHHHHhhh
Q 013262          412 AGVSPVVGILTRQDLRAFNILTA  434 (447)
Q Consensus       412 ~g~~~lvGIITr~DLl~~~~~~~  434 (447)
                         |+++|+||++|+++++.++.
T Consensus       110 ---~~~vGivt~~Dil~a~~~~l  129 (132)
T d2yzia1         110 ---GKIVGIFTLSDLLEASRRRL  129 (132)
T ss_dssp             ---TEEEEEEEHHHHHHHHHCCS
T ss_pred             ---CEEEEEEEHHHHHHHHHHHH
Confidence               67999999999999987654

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.78  E-value=5.5e-19  Score=151.23  Aligned_cols=133  Identities=19%  Similarity=0.186  Sum_probs=111.6

Q ss_pred             ccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcc
Q 013262          253 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKR  332 (447)
Q Consensus       253 l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~  332 (447)
                      ++|+++|++  +++++++++++.++++.|.+++++++||+|++           ++++|+++..|+.+.+........  
T Consensus         2 ~~V~~iMt~--~v~~v~~~~tl~~a~~~m~~~~~~~ipVv~~~-----------~~~~g~i~~~di~~~~~~~~~~~~--   66 (141)
T d3ddja1           2 FPVKVFMST--KVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDD-----------NKVVGIVTVVNAIKQLAKAVDKLD--   66 (141)
T ss_dssp             CBHHHHSBC--SCCCEETTSBHHHHHHHHHHHTCSEEEEECTT-----------SCEEEEEEHHHHHHHHHHHHHHTC--
T ss_pred             EeeHHhCcC--CCeEEcCcCcHHHHHHHHHHcCCCeeeccccc-----------Cccccccccccchhhhhccccccc--
Confidence            578999999  99999999999999999999999999999987           899999999999876643210000  


Q ss_pred             cchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccC
Q 013262          333 RTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAA  412 (447)
Q Consensus       333 ~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~  412 (447)
                                                    ........++++|+++++++++++++.+++++|.+.+++++||+|+    
T Consensus        67 ------------------------------~~~~~~~~v~~im~~~~~~v~~~~~~~~~~~~m~~~~~~~l~Vvd~----  112 (141)
T d3ddja1          67 ------------------------------PDYFYGKVVKDVMVTNLVTIDELASVNRAAAEMIVKRIGSLLILNK----  112 (141)
T ss_dssp             ------------------------------THHHHTCBHHHHSBCCCCBCCTTSBHHHHHHHHHHHTCSEEEEECT----
T ss_pred             ------------------------------cccccCCCHHHHhCcccccccccchhhHHHHHHHHcCCCEEEEEcc----
Confidence                                          0001123567788899999999999999999999999999999997    


Q ss_pred             CCCcEEEEEeHHHHHHHHHhhhc
Q 013262          413 GVSPVVGILTRQDLRAFNILTAF  435 (447)
Q Consensus       413 g~~~lvGIITr~DLl~~~~~~~~  435 (447)
                       +|+++|+||++|+++++.+...
T Consensus       113 -~~~~iGiIt~~Dil~~l~~~~~  134 (141)
T d3ddja1         113 -DNTIRGIITERDLLIALHHILV  134 (141)
T ss_dssp             -TSCEEEEEEHHHHHHHHHHHHH
T ss_pred             -CCEEEEEEEHHHHHHHHHHHHh
Confidence             5789999999999998876543

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.77  E-value=6.1e-19  Score=148.72  Aligned_cols=119  Identities=18%  Similarity=0.180  Sum_probs=103.3

Q ss_pred             cccccccCCCCeeEecCCCCHHHHHHHHhcC-----CCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhh
Q 013262          254 TVGELIDAKPPVITLSGIEKVSQIVDVLRNT-----THNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFL  328 (447)
Q Consensus       254 ~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~-----~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~  328 (447)
                      ||+.+|++  ++++++++.+++++++.|+++     +.+.+||||++           ++++|+++.+++...       
T Consensus         2 taG~iM~~--d~i~v~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~-----------~~l~G~v~~~~l~~~-------   61 (127)
T d2ouxa2           2 TAGAIMTT--EFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQE-----------NHLVGVISLRDLIVN-------   61 (127)
T ss_dssp             BHHHHCBS--CCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTT-----------CBEEEEEEHHHHTTS-------
T ss_pred             ChhHhCCC--CcEEECCCCcHHHHHHHhHhhcccccceeeeEEEecC-----------CeEEEEEEeeccccc-------
Confidence            68999999  999999999999999999776     36789999987           899999998887420       


Q ss_pred             hhcccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeC
Q 013262          329 QEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPK  408 (447)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~  408 (447)
                       .                                    ....+.++|+++++++++++++.+|.++|.+++++++||||+
T Consensus        62 -~------------------------------------~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lPVVD~  104 (127)
T d2ouxa2          62 -D------------------------------------DDTLIADILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDY  104 (127)
T ss_dssp             -C------------------------------------TTSBHHHHSBSCCCCEETTSBHHHHHHHHHHHTCSEEEEECT
T ss_pred             -c------------------------------------ccEEhhhhccCCCccCCCCCCHHHHHHHHHHhCCEEEEEEeC
Confidence             0                                    012466788899999999999999999999999999999987


Q ss_pred             cccCCCCcEEEEEeHHHHHHHHHhhh
Q 013262          409 YEAAGVSPVVGILTRQDLRAFNILTA  434 (447)
Q Consensus       409 ~~~~g~~~lvGIITr~DLl~~~~~~~  434 (447)
                           +|+++|+||++|+++...++.
T Consensus       105 -----~g~lvGiIt~~Dil~~i~eea  125 (127)
T d2ouxa2         105 -----DDHLLGIVTVDDIIDVIDDEA  125 (127)
T ss_dssp             -----TCBEEEEEEHHHHHHHHHHHH
T ss_pred             -----CCEEEEEEEHHHHHHHHHHHh
Confidence                 678999999999999877653

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.77  E-value=3.5e-19  Score=155.17  Aligned_cols=154  Identities=11%  Similarity=0.104  Sum_probs=109.1

Q ss_pred             ccccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhh
Q 013262          251 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQE  330 (447)
Q Consensus       251 ~~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~  330 (447)
                      ++++++++|++  +++++++++++.++++.|++++++++||+|++           ++++|+|+..|+.+.+........
T Consensus         2 ~~~~v~~~m~r--~v~~v~~~~~l~~a~~~m~~~~~~~lPVvd~~-----------~~lvG~it~~Dl~~~~~~~~~~~~   68 (156)
T d2yzqa1           2 KGVEIEPYYQR--YVSIVWEGTPLKAALKALLLSNSMALPVVDSE-----------GNLVGIVDETDLLRDSEIVRIMKS   68 (156)
T ss_dssp             GGCBSTTTSBS--CCCCEETTSBHHHHHHHHHTCSSSEEEEECTT-----------SCEEEEEEGGGGGGCGGGCC----
T ss_pred             CCCCHHHHhcC--CCeEECCcCcHHHHHHHHHHcCCCEEEEEeCC-----------CCceeEEeeeechhhhcccccccc
Confidence            56899999999  99999999999999999999999999999987           899999999999754332111110


Q ss_pred             cccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcc
Q 013262          331 KRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYE  410 (447)
Q Consensus       331 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~  410 (447)
                      .....  ............  ....    ...........+.++|.++++++.+++++.++.+.|.+.+.+++||+|+  
T Consensus        69 ~~~~~--~~~~~~~~~~~~--~~~~----~~~~~~~~~~~v~~~m~~~~~tv~~~~~l~~~~~~m~~~~~~~lpVvd~--  138 (156)
T d2yzqa1          69 TELAA--SSEEEWILESHP--TLLF----EKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRG--  138 (156)
T ss_dssp             ------------------------------------CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEET--
T ss_pred             ccccc--chhhhhhhhhhh--hhhH----HHhhhcccCCEeehhcccCceEECcccccHHHHHHHHHcCeeEEEEEeC--
Confidence            00000  000000000000  0000    0000111234678899999999999999999999999999999999997  


Q ss_pred             cCCCCcEEEEEeHHHHHHHH
Q 013262          411 AAGVSPVVGILTRQDLRAFN  430 (447)
Q Consensus       411 ~~g~~~lvGIITr~DLl~~~  430 (447)
                         +|+++||||++|+++++
T Consensus       139 ---~g~lvGivt~~Dil~~l  155 (156)
T d2yzqa1         139 ---EGDLIGLIRDFDLLKVL  155 (156)
T ss_dssp             ---TTEEEEEEEHHHHGGGG
T ss_pred             ---CCEEEEEEEHHHHHHHh
Confidence               67899999999999864

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=99.76  E-value=4.7e-19  Score=152.73  Aligned_cols=122  Identities=20%  Similarity=0.200  Sum_probs=106.2

Q ss_pred             cccccccCCCCeeEecCCCCHHHHHHHHhcCC-----CCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhh
Q 013262          254 TVGELIDAKPPVITLSGIEKVSQIVDVLRNTT-----HNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFL  328 (447)
Q Consensus       254 ~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~-----~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~  328 (447)
                      +|+++|++  +++++++++|+.++++.|++++     .+.+||+|++           ++++|+|+.+|+....      
T Consensus         2 taG~iM~~--~~itv~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~-----------~~l~G~v~~~dl~~~~------   62 (144)
T d2yvxa2           2 EAGGLMTP--EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEK-----------GRLKGVLSLRDLIVAD------   62 (144)
T ss_dssp             SSGGGCBS--CCCEECSSCBHHHHHHHSSSSCTTSSCSSBCEEBCTT-----------CBBCCBCBHHHHTTSC------
T ss_pred             CcccccCC--CCEEECCCCcHHHHHHHHHHhcccccceeeeEEecCC-----------CCEecccchhhhhhcc------
Confidence            68999999  9999999999999999998764     5788999987           9999999999984310      


Q ss_pred             hhcccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeC
Q 013262          329 QEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPK  408 (447)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~  408 (447)
                                                            ....+.++|+++++++++++++.+|+++|.+++++++||||+
T Consensus        63 --------------------------------------~~~~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lPVVd~  104 (144)
T d2yvxa2          63 --------------------------------------PRTRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDE  104 (144)
T ss_dssp             --------------------------------------TTCBSTTTSBSSCCCEESSCCHHHHHHHHHHSCCSEEEEECS
T ss_pred             --------------------------------------cccchHHhcccCCccCCCCChHHHHHHHHHHcCCCEEEEEeE
Confidence                                                  112467789999999999999999999999999999999997


Q ss_pred             cccCCCCcEEEEEeHHHHHHHHHhhhcCc
Q 013262          409 YEAAGVSPVVGILTRQDLRAFNILTAFPH  437 (447)
Q Consensus       409 ~~~~g~~~lvGIITr~DLl~~~~~~~~~~  437 (447)
                           +|+++|+||++|+++++.++..+.
T Consensus       105 -----~g~lvGiIt~~Dil~~l~~e~~ed  128 (144)
T d2yvxa2         105 -----EGRLVGIVTVDDVLDVLEAEATED  128 (144)
T ss_dssp             -----SCBEEEEEEHHHHHHHHHHHHHHH
T ss_pred             -----CCEEEEEEEHHHHHHHHHHHhHHH
Confidence                 678999999999999888766443

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=99.76  E-value=6.4e-19  Score=149.44  Aligned_cols=130  Identities=19%  Similarity=0.130  Sum_probs=107.2

Q ss_pred             ccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcc
Q 013262          253 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKR  332 (447)
Q Consensus       253 l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~  332 (447)
                      .+|+++|.+..++++++++++++++++.|.+++++++||+|++           ++++|+|+..|+++.+.......   
T Consensus         2 ~tv~~~mip~~~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd~~-----------~~~vGiit~~di~~~~~~~~~~~---   67 (132)
T d1yava3           2 ATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPS-----------YRLHGLIGTNMIMNSIFGLERIE---   67 (132)
T ss_dssp             CBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTT-----------CBEEEEEEHHHHHHHHBCSSSBC---
T ss_pred             CCHHHccccccceEEEcCCCCHHHHHHHHHhhCCCceEEeecc-----------cccccEEEcchhHHHhhcccccc---
Confidence            5789999765589999999999999999999999999999987           89999999999988664311000   


Q ss_pred             cchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccC
Q 013262          333 RTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAA  412 (447)
Q Consensus       333 ~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~  412 (447)
                                  .                  +......++++|+++++++++++++.+++++|.+.  +.+||+|+    
T Consensus        68 ------------~------------------~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~--~~l~Vvd~----  111 (132)
T d1yava3          68 ------------F------------------EKLDQITVEEVMLTDIPRLHINDPIMKGFGMVINN--GFVCVEND----  111 (132)
T ss_dssp             ------------G------------------GGTTTSBHHHHSBCSCCEEETTSBHHHHHHHTTTC--SEEEEECT----
T ss_pred             ------------c------------------cccccccccccccccccccccchhHHHHHHHHHhC--CEEEEEcc----
Confidence                        0                  00012346678889999999999999999999875  46999997    


Q ss_pred             CCCcEEEEEeHHHHHHHHHhh
Q 013262          413 GVSPVVGILTRQDLRAFNILT  433 (447)
Q Consensus       413 g~~~lvGIITr~DLl~~~~~~  433 (447)
                       +|+++|+||++|+++++.+.
T Consensus       112 -~~~~~Givt~~dil~~l~~~  131 (132)
T d1yava3         112 -EQVFEGIFTRRVVLKELNKH  131 (132)
T ss_dssp             -TCBEEEEEEHHHHHHHHHHH
T ss_pred             -CCEEEEEEEHHHHHHHHHhh
Confidence             67899999999999998875

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=2.6e-18  Score=151.84  Aligned_cols=156  Identities=21%  Similarity=0.350  Sum_probs=111.0

Q ss_pred             cccccccccCCC--Ce--eEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhh
Q 013262          252 TLTVGELIDAKP--PV--ITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWF  327 (447)
Q Consensus       252 ~l~v~diM~~~~--~v--v~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~  327 (447)
                      ...|+|+|.+..  ++  +.+.+++|++++.++|.+++++++|||+++         ++++++|+|+++||..++.....
T Consensus         2 ~~~a~DiM~p~~~~~~~~v~~~~~~tv~~a~~ll~~~~~~~~PVV~~~---------~~~~lvG~is~~dl~~~l~~~~~   72 (169)
T d2j9la1           2 KTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSR---------ESQRLVGFVLRRDLIISIENARK   72 (169)
T ss_dssp             CCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCT---------TTCBEEEEEEHHHHHHHHHHHHT
T ss_pred             ccchhhhcCcCCCCCceEEECCCcCCHHHHHHHHHHcCCCceeeeecC---------CCCeEEEEEEhHHHHHHHhcccc
Confidence            457899998632  22  445678899999999999999999999654         34899999999999988865322


Q ss_pred             hhhcccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEe
Q 013262          328 LQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVP  407 (447)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd  407 (447)
                      ..+....        .....+....      ...........+++++|+++|+++.+++++.+++++|.+++.+++||+|
T Consensus        73 ~~~~~~~--------~~~~~~~~~~------~~~~~~~~~~~~v~~im~~~~~tv~~~~~l~~v~~~~~~~~~~~l~V~d  138 (169)
T d2j9la1          73 KQDGVVS--------TSIIYFTEHS------PPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH  138 (169)
T ss_dssp             SCSCCCT--------TCEEECSSSC------CCCCTTCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE
T ss_pred             ccccccc--------chhhhhcccc------hhhhhccccccchhhhccCCCEEECCCCcHHHHHHHHHhcCceEEEEEE
Confidence            1111000        0000000000      0001111234568899999999999999999999999999999999987


Q ss_pred             CcccCCCCcEEEEEeHHHHHHHHHhhhcC
Q 013262          408 KYEAAGVSPVVGILTRQDLRAFNILTAFP  436 (447)
Q Consensus       408 ~~~~~g~~~lvGIITr~DLl~~~~~~~~~  436 (447)
                      +      |+++|+||++|++++..+...+
T Consensus       139 ~------g~lvGiIt~~Dil~~l~~~~~~  161 (169)
T d2j9la1         139 N------GRLLGIITKKDVLKHIAQMANQ  161 (169)
T ss_dssp             T------TEEEEEEEHHHHHHHHHHHCC-
T ss_pred             C------CEEEEEEEHHHHHHHHHHHhcC
Confidence            4      6799999999999988764433

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.76  E-value=2.3e-18  Score=143.59  Aligned_cols=119  Identities=13%  Similarity=0.148  Sum_probs=102.5

Q ss_pred             cccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhccc
Q 013262          254 TVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRR  333 (447)
Q Consensus       254 ~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~  333 (447)
                      +|+|+|++  +++++++++|+.++++.|.+++++.+||+++            ++++|+|+++||.+.+......     
T Consensus         1 kV~diM~~--~~~~v~~~~sl~ea~~~~~~~~~~~~~V~~~------------~~~~Gvit~~Di~~~l~~~~~~-----   61 (120)
T d1pbja3           1 RVEDVMVT--DVDTIDITASLEDVLRNYVENAKGSSVVVKE------------GVRVGIVTTWDVLEAIAEGDDL-----   61 (120)
T ss_dssp             CHHHHCBC--SCCEEETTCBHHHHHHHHHHHCCCEEEEEET------------TEEEEEEEHHHHHHHHHHTCCT-----
T ss_pred             ChHHhCCC--CCeEECCcCcHHHHHHHHHHcCceEEEEEeC------------CcEEEEEEeeeccccccccccc-----
Confidence            47899999  9999999999999999999999999998875            7999999999998876542100     


Q ss_pred             chhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCC
Q 013262          334 TEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAG  413 (447)
Q Consensus       334 ~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g  413 (447)
                                                       ....+.++|++++.++++++++.+|+++|++.+++++||+++     
T Consensus        62 ---------------------------------~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~V~~~-----  103 (120)
T d1pbja3          62 ---------------------------------AEVKVWEVMERDLVTISPRATIKEAAEKMVKNVVWRLLVEED-----  103 (120)
T ss_dssp             ---------------------------------TTSBHHHHCBCGGGEECTTSCHHHHHHHHHHHTCSEEEEEET-----
T ss_pred             ---------------------------------cceeEeeecccccccccchhHHHHHHHHHHHcCCeEEEEEEC-----
Confidence                                             113456678899999999999999999999999999999864     


Q ss_pred             CCcEEEEEeHHHHHHHH
Q 013262          414 VSPVVGILTRQDLRAFN  430 (447)
Q Consensus       414 ~~~lvGIITr~DLl~~~  430 (447)
                       |+++|+||++|++++.
T Consensus       104 -~~l~Givt~~Dil~A~  119 (120)
T d1pbja3         104 -DEIIGVISATDILRAK  119 (120)
T ss_dssp             -TEEEEEEEHHHHHHHH
T ss_pred             -CEEEEEEEHHHHHhcC
Confidence             6799999999999874

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=99.76  E-value=1.9e-18  Score=144.32  Aligned_cols=120  Identities=16%  Similarity=0.162  Sum_probs=106.1

Q ss_pred             ccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcc
Q 013262          253 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKR  332 (447)
Q Consensus       253 l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~  332 (447)
                      ++++++|++  ++++++++++++++++.|++.+++.+||+|++           ++++|+|+..|+.++.          
T Consensus         1 m~v~~~m~~--~~~~v~~~~tv~ea~~~m~~~~~~~v~Vvd~~-----------~~~~Gii~~~dl~~~~----------   57 (121)
T d1vr9a3           1 MKVKKWVTQ--DFPMVEESATVRECLHRMRQYQTNECIVKDRE-----------GHFRGVVNKEDLLDLD----------   57 (121)
T ss_dssp             CBGGGGCBS--CSCEEETTCBHHHHHHHHHHTTSSEEEEECTT-----------SBEEEEEEGGGGTTSC----------
T ss_pred             CCchhhhcC--CCeEECCCCCHHHHHHhhhhcCcEEEEEEeCC-----------ceeEEEeehhhhhhhh----------
Confidence            578999999  99999999999999999999999999999877           8999999999885310          


Q ss_pred             cchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccC
Q 013262          333 RTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAA  412 (447)
Q Consensus       333 ~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~  412 (447)
                                                        ....+.++|+.+++++++++++.+++++|.+.+.+.+||||+    
T Consensus        58 ----------------------------------~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvde----   99 (121)
T d1vr9a3          58 ----------------------------------LDSSVFNKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDE----   99 (121)
T ss_dssp             ----------------------------------TTSBSGGGCBCTTCCEETTSBHHHHHHHHHHCCCSEEEEECT----
T ss_pred             ----------------------------------ccccccccccCccEEECCCCCHHHHHHHHHhcCceeeeeECC----
Confidence                                              012356678889999999999999999999999999999998    


Q ss_pred             CCCcEEEEEeHHHHHHHHHhhh
Q 013262          413 GVSPVVGILTRQDLRAFNILTA  434 (447)
Q Consensus       413 g~~~lvGIITr~DLl~~~~~~~  434 (447)
                       +|+++|+||++|+++++.++.
T Consensus       100 -~g~~~Gvit~~dil~~l~~~l  120 (121)
T d1vr9a3         100 -EMRLKGAVSLHDFLEALIEAL  120 (121)
T ss_dssp             -TCBEEEEEEHHHHHHHHHHSC
T ss_pred             -CCeEEEEEEHHHHHHHHHHhc
Confidence             678999999999999988753

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.75  E-value=4.9e-18  Score=142.97  Aligned_cols=123  Identities=19%  Similarity=0.209  Sum_probs=103.3

Q ss_pred             cccccccCC-CCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcc
Q 013262          254 TVGELIDAK-PPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKR  332 (447)
Q Consensus       254 ~v~diM~~~-~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~  332 (447)
                      ||+|+|..+ .+++++++++++.++++.|.+++++++||+++            ++++|+||++|+++.+....    . 
T Consensus         3 tV~dim~~k~~~v~~i~~~~tl~~a~~~m~~~~~~~vpV~~~------------~~~vGiit~~Di~~~~~~~~----~-   65 (127)
T d2rc3a1           3 TVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKD------------EKLVGILTERDFSRKSYLLD----K-   65 (127)
T ss_dssp             BHHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEET------------TEEEEEEEHHHHHHHGGGSS----S-
T ss_pred             cHHHHHccCCCccEEECCcCcHHHHHHHHHHcCCCEEEEEEC------------CeEEEEEEccchhhhhhhhc----c-
Confidence            689999742 27899999999999999999999999999985            79999999999976432210    0 


Q ss_pred             cchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccC
Q 013262          333 RTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAA  412 (447)
Q Consensus       333 ~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~  412 (447)
                                                      ......++++|+++++++.+++++.+|+++|.+.+++++||+|+    
T Consensus        66 --------------------------------~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~----  109 (127)
T d2rc3a1          66 --------------------------------PVKDTQVKEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLDD----  109 (127)
T ss_dssp             --------------------------------CGGGSBGGGTSBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEET----
T ss_pred             --------------------------------cccceeEeeeccceeEEeccCccHHHHHHHHHHCCCcEEEEEEC----
Confidence                                            00123577889999999999999999999999999999999984    


Q ss_pred             CCCcEEEEEeHHHHHHHHH
Q 013262          413 GVSPVVGILTRQDLRAFNI  431 (447)
Q Consensus       413 g~~~lvGIITr~DLl~~~~  431 (447)
                        |+++|+||++|++++..
T Consensus       110 --~~~~GiIt~~Dil~~~i  126 (127)
T d2rc3a1         110 --GKVIGLLSIGDLVKDAI  126 (127)
T ss_dssp             --TEEEEEEEHHHHHHHHH
T ss_pred             --CEEEEEEEHHHHHHHHh
Confidence              57999999999998753

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.73  E-value=1.7e-17  Score=140.11  Aligned_cols=123  Identities=19%  Similarity=0.244  Sum_probs=102.6

Q ss_pred             ccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcc
Q 013262          253 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKR  332 (447)
Q Consensus       253 l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~  332 (447)
                      ++|+|+|++  +++++++++++.++++.|.+++.+++||++.+         ++++++|+++..|+.+.+......    
T Consensus         1 ~~V~dim~~--~~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~d---------~~~~~iGi~~~~dl~~~~~~~~~~----   65 (131)
T d2riha1           1 IRTSELLKR--PPVSLPETATIREVATELAKNRVGLAVLTARD---------NPKRPVAVVSERDILRAVAQRLDL----   65 (131)
T ss_dssp             CBGGGGCCS--CCEEEETTCBHHHHHHHHHHHTCSEEEEEETT---------EEEEEEEEEEHHHHHHHHHTTCCT----
T ss_pred             CCHHHhccC--CCEEECCCCcHHHHHHHHHHhCCCcEEEEEEc---------CCCEEEEEEeeecccccccccccc----
Confidence            579999999  89999999999999999999999999999653         238999999999998766542100    


Q ss_pred             cchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccC
Q 013262          333 RTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAA  412 (447)
Q Consensus       333 ~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~  412 (447)
                                                          ......+..++.++.+++++.+++++|.+.+++++||+|+    
T Consensus        66 ------------------------------------~~~~~~~~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVvd~----  105 (131)
T d2riha1          66 ------------------------------------DGPAMPIANSPITVLDTDPVHVAAEKMRRHNIRHVVVVNK----  105 (131)
T ss_dssp             ------------------------------------TSBSGGGCBCCCEEETTSBHHHHHHHHHHHTCSEEEEECT----
T ss_pred             ------------------------------------ccccccccccceeEeeecchHHHHHHHHHCCeEEEEEEcC----
Confidence                                                0112234467789999999999999999999999999997    


Q ss_pred             CCCcEEEEEeHHHHHHHHH
Q 013262          413 GVSPVVGILTRQDLRAFNI  431 (447)
Q Consensus       413 g~~~lvGIITr~DLl~~~~  431 (447)
                       +|+++|+||++||+++..
T Consensus       106 -~g~l~Giit~~Dll~~~~  123 (131)
T d2riha1         106 -NGELVGVLSIRDLCFERA  123 (131)
T ss_dssp             -TSCEEEEEEHHHHHSCHH
T ss_pred             -CCeEEEEEEHHHHHHHHH
Confidence             678999999999998643

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.73  E-value=2e-17  Score=138.99  Aligned_cols=115  Identities=15%  Similarity=0.185  Sum_probs=94.7

Q ss_pred             ccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhh
Q 013262          259 IDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWE  338 (447)
Q Consensus       259 M~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~  338 (447)
                      |..  +++++++++++.+++++|.+++++++||+|+.         ++++++|+|+++|+.......             
T Consensus         3 mi~--dpvtv~~~~tv~~a~~~m~~~~~~~~pVvD~~---------~~~~lvGivt~~Di~~~~~~~-------------   58 (126)
T d1zfja4           3 VII--DPFFLTPEHKVSEAEELMQRYRISGVPIVETL---------ANRKLVGIITNRDMRFISDYN-------------   58 (126)
T ss_dssp             TSS--SCCCBCSSSBHHHHHHHHHHTTCSEEEEESCT---------TTCBEEEEEEHHHHHHCSCSS-------------
T ss_pred             CEe--CceEECCCCCHHHHHHHHHHhCCCcEEEEeec---------cCCeEEEEeEHHHHHHhhccC-------------
Confidence            556  67899999999999999999999999999973         238999999999996522110             


Q ss_pred             hhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEE
Q 013262          339 VREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVV  418 (447)
Q Consensus       339 ~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lv  418 (447)
                                                   ......+|...++++.+++++.+|+++|.+.+++++||||+     +|+++
T Consensus        59 -----------------------------~~~~~~~~~~~~~~~~~~~~l~~a~~~m~~~~~~~lpVVd~-----~g~lv  104 (126)
T d1zfja4          59 -----------------------------APISEHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDN-----SGRLS  104 (126)
T ss_dssp             -----------------------------SBTTTSCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEECT-----TSBEE
T ss_pred             -----------------------------CceeeeeeccceeecCCCCCHHHHHHHHHhcCCcEEEEEcC-----CCeEE
Confidence                                         00112345677889999999999999999999999999987     67899


Q ss_pred             EEEeHHHHHHHHH
Q 013262          419 GILTRQDLRAFNI  431 (447)
Q Consensus       419 GIITr~DLl~~~~  431 (447)
                      |+||++|++++..
T Consensus       105 GiiT~~Dil~~~~  117 (126)
T d1zfja4         105 GLITIKDIEKVIE  117 (126)
T ss_dssp             EEEEHHHHHHHHH
T ss_pred             EEEEHHHHHHHhh
Confidence            9999999999754

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.71  E-value=1.3e-17  Score=141.43  Aligned_cols=132  Identities=14%  Similarity=0.096  Sum_probs=106.8

Q ss_pred             ccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcc
Q 013262          253 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKR  332 (447)
Q Consensus       253 l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~  332 (447)
                      ++|+|+|.+  +++++++++++.++++.|.+++++.+||+|+             +++|+++..++...+........  
T Consensus         1 m~V~~lM~~--~~~~v~~~~tl~~a~~~m~~~~~~~l~V~d~-------------~lvg~~~~~~~~~~~~~~~~~~~--   63 (135)
T d3ddja2           1 MNIETLMIK--NPPILSKEDRLGSAFKKINEGGIGRIIVANE-------------KIEGLLTTRDLLSTVESYCKDSC--   63 (135)
T ss_dssp             SSGGGTCEE--SCCEECTTSBHHHHHHHTTGGGCCEEEEESS-------------SEEEEEEHHHHHGGGTTCC---C--
T ss_pred             CEeeEEeeC--CCeEECCCCcHHHHHHHHHHhCCeEEEEEec-------------ceeceeeccchhhhhccccccch--
Confidence            578999999  8899999999999999999999999999864             59999999999765432110000  


Q ss_pred             cchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccC
Q 013262          333 RTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAA  412 (447)
Q Consensus       333 ~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~  412 (447)
                                ...                .........++++|.++++++++++++.+|+++|.+.+++++||+|+    
T Consensus        64 ----------~~~----------------~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~----  113 (135)
T d3ddja2          64 ----------SQG----------------DLYHISTTPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDI----  113 (135)
T ss_dssp             ----------CHH----------------HHHHHHTSBGGGTSEESCCCEETTSCHHHHHHHHHHHTCSEEEEECT----
T ss_pred             ----------hhh----------------hccccccCCHHHHhCCccceEEeccccchhhhhhhhcceeEEEEEeC----
Confidence                      000                00111235688899999999999999999999999999999999998    


Q ss_pred             CCCcEEEEEeHHHHHHHHHh
Q 013262          413 GVSPVVGILTRQDLRAFNIL  432 (447)
Q Consensus       413 g~~~lvGIITr~DLl~~~~~  432 (447)
                       +|+++|+||++|+++++.+
T Consensus       114 -~g~lvGiit~~Dil~~~~~  132 (135)
T d3ddja2         114 -NDKPVGIVTEREFLLLYKD  132 (135)
T ss_dssp             -TSCEEEEEEHHHHGGGGGG
T ss_pred             -CCEEEEEEEHHHHHHHHHH
Confidence             6789999999999987654

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.70  E-value=5.5e-17  Score=141.43  Aligned_cols=147  Identities=12%  Similarity=0.079  Sum_probs=111.3

Q ss_pred             cccccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhh
Q 013262          250 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ  329 (447)
Q Consensus       250 l~~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~  329 (447)
                      +...+++|+|.+..+++++++++++.++++.|.+++++++||++++          .++++|+|+..|+...+.......
T Consensus        10 l~~~t~~Dlm~~~~~vv~l~~~~sv~eA~~~l~~~~~~~~pVv~~~----------~~~~vG~is~~Dl~~~~~~~~~~~   79 (159)
T d2v8qe2          10 MKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSK----------KQSFVGMLTITDFINILHRYYKSA   79 (159)
T ss_dssp             HHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETT----------TTEEEEEEEHHHHHHHHHHHHHHH
T ss_pred             hcCCEEEeECCCCCceEEEcCCCcHHHHHHHHHHcCCCceeEEECC----------CCcEEEEEEHHHHHHHHHhccccc
Confidence            3456899999654478999999999999999999999999999864          278999999999988765532111


Q ss_pred             hcccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCc
Q 013262          330 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKY  409 (447)
Q Consensus       330 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~  409 (447)
                      .....       ....                ...........++|.++++++++++++.+|+++|.+++.+++||+|+ 
T Consensus        80 ~~~~~-------~~~~----------------~~~~~~~~~~~~~~~~~~~~v~~~~~l~~v~~~m~~~~~~~v~Vvd~-  135 (159)
T d2v8qe2          80 LVQIY-------ELEE----------------HKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDP-  135 (159)
T ss_dssp             TTTCC-------CGGG----------------CBHHHHHHHHSSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECT-
T ss_pred             cchhh-------hhhh----------------hhcccccceeeeeeccceEEECCCCcHHHHHHHHHHhCCeEEEEEEC-
Confidence            00000       0000                00001122356678889999999999999999999999999999985 


Q ss_pred             ccCCCCcEEEEEeHHHHHHHHHhh
Q 013262          410 EAAGVSPVVGILTRQDLRAFNILT  433 (447)
Q Consensus       410 ~~~g~~~lvGIITr~DLl~~~~~~  433 (447)
                         ++|+++||||++||+++....
T Consensus       136 ---~~g~~~GivT~~dilk~l~~~  156 (159)
T d2v8qe2         136 ---ESGNTLYILTHKRILKFLKLF  156 (159)
T ss_dssp             ---TTCCEEEEECHHHHHHHHHHH
T ss_pred             ---CCCeEEEEEeHHHHHHHHHHH
Confidence               246899999999999987654

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.70  E-value=3e-16  Score=136.08  Aligned_cols=132  Identities=14%  Similarity=0.145  Sum_probs=104.6

Q ss_pred             ccccccC-CCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhccc
Q 013262          255 VGELIDA-KPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRR  333 (447)
Q Consensus       255 v~diM~~-~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~  333 (447)
                      +++++.. ..+++++.+++++.++++.|.+++++++||+|++           ++++|+|+..|+...+.......    
T Consensus         3 l~~~~ig~~~~vv~v~~~~~v~~a~~~m~~~~~~~lpVvd~~-----------~~~vG~it~~Dl~~~~~~~~~~~----   67 (153)
T d2ooxe2           3 LNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSE-----------GTLLNVYESVDVMHLIQDGDYSN----   67 (153)
T ss_dssp             GGGTCCSBCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEECGG-----------GBEEEEEEHHHHHHHHGGGCGGG----
T ss_pred             HHHcCCCCCCCCeEEeCcCcHHHHHHHHHHcCcceEeeeccc-----------ceEEEEEEeeeeeehhccccccc----
Confidence            4455432 1278899999999999999999999999999987           89999999999988765422110    


Q ss_pred             chhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCC
Q 013262          334 TEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAG  413 (447)
Q Consensus       334 ~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g  413 (447)
                             ...++.+++                    ...+.+...++++.+++++.++++.|.+.+.+++||||+     
T Consensus        68 -------~~~~v~~~~--------------------~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-----  115 (153)
T d2ooxe2          68 -------LDLSVGEAL--------------------LKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDE-----  115 (153)
T ss_dssp             -------GGSBHHHHH--------------------HTSCCCSSCCCEECTTCBHHHHHHHHHHSCCSEEEEECT-----
T ss_pred             -------cccchhhhe--------------------eeeecccCCCeEECCCCcHHHHHHhhhhceeeEEEEEcC-----
Confidence                   012222332                    234566678889999999999999999999999999997     


Q ss_pred             CCcEEEEEeHHHHHHHHHhh
Q 013262          414 VSPVVGILTRQDLRAFNILT  433 (447)
Q Consensus       414 ~~~lvGIITr~DLl~~~~~~  433 (447)
                      +|+++|+||++|++++...+
T Consensus       116 ~~~lvGivT~~Dil~~~~~~  135 (153)
T d2ooxe2         116 NLKLEGILSLADILNYIIYD  135 (153)
T ss_dssp             TCBEEEEEEHHHHHHHHHSC
T ss_pred             CCEEEEEEEHHHHHHHHHcC
Confidence            67899999999999988653

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.70  E-value=7.8e-17  Score=143.24  Aligned_cols=156  Identities=15%  Similarity=0.126  Sum_probs=113.3

Q ss_pred             cccccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhh
Q 013262          250 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ  329 (447)
Q Consensus       250 l~~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~  329 (447)
                      ++..++.|+|.+..++++++++.++.++++.|.+++++++||+|++          +++++|+++..|+...+.......
T Consensus        17 l~~~~~~dvm~~s~~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd~~----------~~~~vGiis~~Di~~~l~~~~~~~   86 (179)
T d2ooxe1          17 IRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSE----------ANKFAGLLTMADFVNVIKYYYQSS   86 (179)
T ss_dssp             HHHSBHHHHSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETT----------TTEEEEEECHHHHHHHHHHHHHHC
T ss_pred             HcCCEeeeeCCCCCcEEEEECcchHHHHHHHHHHcCCCeEEEEeCC----------CCeeEEEEeechHHHHHHhccccc
Confidence            5677899999753378999999999999999999999999999864          279999999999998775422111


Q ss_pred             hcccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCc
Q 013262          330 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKY  409 (447)
Q Consensus       330 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~  409 (447)
                      ... ..         ..++..         ..............+|.++++++.+++++.+|+++|.+.+.+++||+|++
T Consensus        87 ~~~-~~---------~~~~~~---------~~~~~~~~~~~~~~~~~~~~i~v~~~~sl~~~~~~m~~~~~~~lpVvd~~  147 (179)
T d2ooxe1          87 SFP-EA---------IAEIDK---------FRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVD  147 (179)
T ss_dssp             SCG-GG---------GGGGGG---------SBHHHHHHHHHHTTCSCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEEEEC
T ss_pred             cch-hh---------hhhhhc---------cchhhhcccceeeeecccCceEECCCCcHHHHHHHhhhcCceEEEEEecC
Confidence            000 00         000000         00000011112334678899999999999999999999999999999973


Q ss_pred             ccCCCCcEEEEEeHHHHHHHHHhhh
Q 013262          410 EAAGVSPVVGILTRQDLRAFNILTA  434 (447)
Q Consensus       410 ~~~g~~~lvGIITr~DLl~~~~~~~  434 (447)
                      +..++++++|+||++||+++...+.
T Consensus       148 g~~~~~~vvgiiT~~dIlk~l~~~~  172 (179)
T d2ooxe1         148 GETGSEMIVSVLTQYRILKFISMNC  172 (179)
T ss_dssp             TTTCCEEEEEEEEHHHHHHHHHTTC
T ss_pred             CCcCCCcEEEEEeHHHHHHHHHHhh
Confidence            2233458999999999999876543

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=99.69  E-value=1.1e-16  Score=137.40  Aligned_cols=139  Identities=15%  Similarity=0.144  Sum_probs=105.0

Q ss_pred             cccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhccc
Q 013262          254 TVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRR  333 (447)
Q Consensus       254 ~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~  333 (447)
                      .+.++|.+  +++++++++++.++++.|.+++++++||+|++           ++++|+|+..|+...+.......... 
T Consensus         5 ~v~~~m~~--~p~~v~~~~~v~~a~~~m~~~~~~~ipVvd~~-----------~~~vGiis~~Dl~~~~~~~~~~~~~~-   70 (145)
T d1o50a3           5 DVCKLISL--KPTVVEEDTPIEEIVDRILEDPVTRTVYVARD-----------NKLVGMIPVMHLLKVSGFHFFGFIPK-   70 (145)
T ss_dssp             HHTTSSCC--CCEEECTTCBHHHHHHHHHHSTTCCEEEEEET-----------TEEEEEEEHHHHHHHHHHHHHCCCC--
T ss_pred             EhHHhCCC--CCEEECCcCcHHHHHHHHHHcCCceEEEeccC-----------cceeeeeccchhhhhhhcccccccch-
Confidence            46678988  88999999999999999999999999999987           89999999999988765432111000 


Q ss_pred             chhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCC
Q 013262          334 TEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAG  413 (447)
Q Consensus       334 ~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g  413 (447)
                                 ......   .....        ....+..+| .+++++.+++++.+|+++|.+.+++++||||+     
T Consensus        71 -----------~~~~~~---~~~~~--------~~~~~~~~~-~~~~~i~~~~~l~~a~~~m~~~~i~~lpVVd~-----  122 (145)
T d1o50a3          71 -----------EELIRS---SMKRL--------IAKNASEIM-LDPVYVHMDTPLEEALKLMIDNNIQEMPVVDE-----  122 (145)
T ss_dssp             --------------------CCCCC--------SSCBHHHHC-BCCCCBCTTSBHHHHHHHHHHHTCSEEEEECT-----
T ss_pred             -----------hHHHHh---hhhhc--------cccCHHHHc-CCCEEEcCCCCHHHHHHHHHHcCceEEEEEeC-----
Confidence                       000000   00000        011122334 56789999999999999999999999999987     


Q ss_pred             CCcEEEEEeHHHHHHHHHhhh
Q 013262          414 VSPVVGILTRQDLRAFNILTA  434 (447)
Q Consensus       414 ~~~lvGIITr~DLl~~~~~~~  434 (447)
                      +|+++|+||++|+++++.++.
T Consensus       123 ~g~i~Gvit~~dil~~l~~~~  143 (145)
T d1o50a3         123 KGEIVGDLNSLEILLALWKGR  143 (145)
T ss_dssp             TSCEEEEEEHHHHHHHHHHSC
T ss_pred             CCeEEEEEEHHHHHHHHHhcC
Confidence            578999999999999988753

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.67  E-value=2e-16  Score=135.06  Aligned_cols=127  Identities=17%  Similarity=0.208  Sum_probs=96.9

Q ss_pred             ccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchh
Q 013262          257 ELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEE  336 (447)
Q Consensus       257 diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~  336 (447)
                      .+|.+  +++++++++++.++++.|.+++++.+||+|++           ++++|+|+..|+.+.+.........     
T Consensus        13 ~~~~~--~v~tv~~~~~v~~a~~~m~~~~~~~ipVvd~~-----------~~~vG~it~~Di~~~~~~~~~~~~~-----   74 (140)
T d2nyca1          13 IITQD--NMKSCQMTTPVIDVIQMLTQGRVSSVPIIDEN-----------GYLINVYEAYDVLGLIKGGIYNDLS-----   74 (140)
T ss_dssp             CCBCS--SCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-----------CBEEEEEEHHHHHHHHHTC----CC-----
T ss_pred             CccCC--CCEEEcCcCcHHHHHHHHHHcCCcEEEEEecC-----------CeEcceehhhHHHHHHhhccccccc-----
Confidence            35666  89999999999999999999999999999987           8999999999999877543211100     


Q ss_pred             hhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCc
Q 013262          337 WEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSP  416 (447)
Q Consensus       337 ~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~  416 (447)
                            ....+                    .+.....+..+++++++++++.+++++|.+.+.+.+||||+     +|+
T Consensus        75 ------~~~~~--------------------~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~VVd~-----~~~  123 (140)
T d2nyca1          75 ------LSVGE--------------------ALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDD-----VGR  123 (140)
T ss_dssp             ------SBHHH--------------------HHHHCC------CEECTTSBHHHHHHHHHHHTCSEEEEECT-----TSB
T ss_pred             ------cchhh--------------------hhhhhhhcccccEEECCCCcHHHHHHHHHhcCeeEEEEEeC-----CCe
Confidence                  00011                    11122344567889999999999999999999999999998     678


Q ss_pred             EEEEEeHHHHHHHHHh
Q 013262          417 VVGILTRQDLRAFNIL  432 (447)
Q Consensus       417 lvGIITr~DLl~~~~~  432 (447)
                      ++|+||++|++++...
T Consensus       124 l~GiIt~~Dii~~l~~  139 (140)
T d2nyca1         124 LVGVLTLSDILKYILL  139 (140)
T ss_dssp             EEEEEEHHHHHHHHHH
T ss_pred             EEEEEEHHHHHHHHhc
Confidence            9999999999998753

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.66  E-value=1.6e-16  Score=136.47  Aligned_cols=134  Identities=13%  Similarity=0.125  Sum_probs=104.6

Q ss_pred             cccccccccC-CCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhh
Q 013262          252 TLTVGELIDA-KPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQE  330 (447)
Q Consensus       252 ~l~v~diM~~-~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~  330 (447)
                      ..+++|++.. ..+++++++++++.++++.|.+++++++||+|++           ++++|+|+..|+...+........
T Consensus         8 ~~~l~~l~i~~~~~v~~v~~~~tv~eal~~m~~~~~~~lpVvd~~-----------~~~~Gvit~~di~~~l~~~~~~~~   76 (145)
T d2v8qe1           8 SKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEK-----------GRVVDIYSKFDVINLAAEKTYNNL   76 (145)
T ss_dssp             GSBHHHHTCSBCSSCCCEETTCBHHHHHHHHHHHCCSEEEEECTT-----------SBEEEEEEGGGTGGGGGSSCCCCC
T ss_pred             hCCHHHHcCCCCCCceEEcCcCcHHHHHHHHHHcCCCcccccccC-----------CceEEEEEcchhhhhhhcccccch
Confidence            3466766432 1178999999999999999999999999999987           899999999999765433211000


Q ss_pred             cccchhhhhhhcchHHHHhhhcccccccccchhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcc
Q 013262          331 KRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYE  410 (447)
Q Consensus       331 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~  410 (447)
                                 .....+                    .......|..+++++.+++++.+++++|.+.+.+++||+|+  
T Consensus        77 -----------~~~v~~--------------------~~~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~--  123 (145)
T d2v8qe1          77 -----------DVSVTK--------------------ALQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDE--  123 (145)
T ss_dssp             -----------SSBHHH--------------------HGGGCCSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECT--
T ss_pred             -----------hhhhhh--------------------ccchhhhccCCCeEECCCCcHHHHHHHHHHcCceEEEEEcc--
Confidence                       001111                    12344567788899999999999999999999999999987  


Q ss_pred             cCCCCcEEEEEeHHHHHHHHHh
Q 013262          411 AAGVSPVVGILTRQDLRAFNIL  432 (447)
Q Consensus       411 ~~g~~~lvGIITr~DLl~~~~~  432 (447)
                         +|+++|+||++||++++.+
T Consensus       124 ---~g~l~GiVt~~dii~~lv~  142 (145)
T d2v8qe1         124 ---HDVVKGIVSLSDILQALVL  142 (145)
T ss_dssp             ---TSBEEEEEEHHHHHHHHHS
T ss_pred             ---CCEEEEEEEHHHHHHHHHh
Confidence               6789999999999998765

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.63  E-value=1.7e-17  Score=138.31  Aligned_cols=115  Identities=17%  Similarity=0.249  Sum_probs=59.4

Q ss_pred             ccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHhhhhhhhcccchhhh
Q 013262          259 IDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWE  338 (447)
Q Consensus       259 M~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~~~~~~~~~~~~~~~  338 (447)
                      |.+  +++++++++++.++.++|.+++++++||+|++        ..+++++|+||.+|+........            
T Consensus         2 m~~--~pvtv~~~~tl~da~~~m~~~~i~~~pVvd~~--------~~~~~lvGivT~~Di~~~~~~~~------------   59 (120)
T d1jr1a4           2 FIT--DPVVLSPKDRVRDVFEAKARHGFCGIPITDTG--------RMGSRLVGIISSRDIDFLKEEEH------------   59 (120)
T ss_dssp             EEC--TTCC----CCCC--CCBC-----------------------CTTCCC----------------------------
T ss_pred             ccc--CCEEECCcCCHHHHHHHHHHhCCCeEEEeecc--------ccCCeEeeeeeeeeeeehhcccc------------
Confidence            445  66799999999999999999999999999863        12379999999999854221100            


Q ss_pred             hhhcchHHHHhhhcccccccccchhhhhhccCccc--cccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCc
Q 013262          339 VREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHP--LTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSP  416 (447)
Q Consensus       339 ~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~idl~~--im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~  416 (447)
                                                   ......  .+..+++++.+++++.+|.++|.+++++++||||+     +|+
T Consensus        60 -----------------------------~~~~~~~~~~~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVVd~-----~~~  105 (120)
T d1jr1a4          60 -----------------------------DRFLEEIMTKREDLVVAPAGITLKEANEILQRSKKGKLPIVNE-----NDE  105 (120)
T ss_dssp             -----------------------------------CCSBTTTSCCEETTCCHHHHHHHTCSCC---CEEEET-----TTE
T ss_pred             -----------------------------CceeEEEEeeccCceEECCCCCHHHHHHHHHHcCccEEEEEcC-----CCE
Confidence                                         001111  23456789999999999999999999999999998     678


Q ss_pred             EEEEEeHHHHHHH
Q 013262          417 VVGILTRQDLRAF  429 (447)
Q Consensus       417 lvGIITr~DLl~~  429 (447)
                      ++|+||++|+++.
T Consensus       106 lvGiiT~~Di~k~  118 (120)
T d1jr1a4         106 LVAIIARTDLKKN  118 (120)
T ss_dssp             EEEEECHHHHHHH
T ss_pred             EEEEEEHHHhhhc
Confidence            9999999999985

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.58  E-value=2.9e-08  Score=82.01  Aligned_cols=60  Identities=13%  Similarity=0.307  Sum_probs=55.8

Q ss_pred             cccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHh
Q 013262          252 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK  324 (447)
Q Consensus       252 ~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~  324 (447)
                      +.+++++|.+  ++.++++++++.++.+.|.+++.+.+||||++           |+++|+||.+|+++++++
T Consensus        64 ~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lPVVD~~-----------g~lvGiIt~~Dil~~i~e  123 (127)
T d2ouxa2          64 DTLIADILNE--RVISVHVGDDQEDVAQTIRDYDFLAVPVTDYD-----------DHLLGIVTVDDIIDVIDD  123 (127)
T ss_dssp             TSBHHHHSBS--CCCCEETTSBHHHHHHHHHHHTCSEEEEECTT-----------CBEEEEEEHHHHHHHHHH
T ss_pred             cEEhhhhccC--CCccCCCCCCHHHHHHHHHHhCCEEEEEEeCC-----------CEEEEEEEHHHHHHHHHH
Confidence            5679999999  89999999999999999999999999999987           899999999999987754

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=98.56  E-value=5.8e-08  Score=81.34  Aligned_cols=60  Identities=20%  Similarity=0.371  Sum_probs=54.5

Q ss_pred             CccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHHHhhh
Q 013262          370 DLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTA  434 (447)
Q Consensus       370 dl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~~~~~  434 (447)
                      .++++|+++++++++++++.+|.++|.+.+.+++||+|+     +++++|+||.+|+++......
T Consensus         3 ~v~diM~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVvd~-----~~~~~Giit~~dl~~~~~~~~   62 (139)
T d2o16a3           3 KVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDA-----NKKLLGIVSQRDLLAAQESSL   62 (139)
T ss_dssp             BGGGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECT-----TCBEEEEEEHHHHHHHHHHHC
T ss_pred             EHHHhCcCCCeEECCcCCHHHHHHHHHHcCCCeeeeecc-----cccccccccHHHHHHHHHhhh
Confidence            467889999999999999999999999999999999987     578999999999998876543

>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Clc chloride channel
superfamily: Clc chloride channel
family: Clc chloride channel
domain: Clc chloride channel
species: Escherichia coli [TaxId: 562]

Probab=98.56  E-value=2.1e-07  Score=93.06  Aligned_cols=100  Identities=16%  Similarity=0.170  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHhhhchhHHHHHHHHHhhc-C
Q 013262          126 FILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTN-N  204 (447)
Q Consensus       126 ~~~k~~~~~~t~g~g~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~~~~~~a~~G~aa~~~g~~~~p~s~~vi~~E~t~-~  204 (447)
                      +..|++.+.+++++|.|.|...|+..+||++|..+++.++.....+...+..+|+||.++++.++|++++++.+|... .
T Consensus       112 ~~~k~~~~~~sl~~G~s~G~EGP~v~iga~i~~~l~~~~~~~~~~~~r~l~~~GaaAglaa~F~aPlaG~lFa~E~l~~~  191 (444)
T d1otsa_         112 LPVKFFGGLGTLGGGMVLGREGPTVQIGGNIGRMVLDIFRLKGDEARHTLLATGAAAGLAAAFNAPLAGILFIIEEMRPQ  191 (444)
T ss_dssp             HHHHHHHHHHHHHTTCSCBSHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHTTTTSCS
T ss_pred             HHHHHHHHHHHHhcCCCccccccHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHHhhccCCchhhhhhhhHHHhhc
Confidence            357999999999999999999999999999999999988642222345788999999999999999999999999643 3


Q ss_pred             Cc----hHHHHHHHHHHHHHHHhhc
Q 013262          205 LL----LLPITMIVLLIAKTVGDSF  225 (447)
Q Consensus       205 ~~----~~~p~~ia~~va~~v~~~l  225 (447)
                      +.    .+.|.++++++++.+...+
T Consensus       192 ~~~~~~~~~~~~~a~~~~~~~~~~~  216 (444)
T d1otsa_         192 FRYTLISIKAVFIGVIMSTIMYRIF  216 (444)
T ss_dssp             SSCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHhhhHHHhhheeec
Confidence            22    3788889988888887765

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.55  E-value=6.9e-08  Score=80.16  Aligned_cols=61  Identities=23%  Similarity=0.244  Sum_probs=55.0

Q ss_pred             ccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHHHhh
Q 013262          368 YIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILT  433 (447)
Q Consensus       368 ~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~~~~  433 (447)
                      ..+++++|+++++++++++++.+|.++|.+.+.+.+||+|+     +|+++|+||.+|+++....+
T Consensus         4 ~~pV~~im~~~~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd~-----~~~~~Giit~~di~~~~~~~   64 (132)
T d2yzia1           4 KAPIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVIND-----DGNVVGFFTKSDIIRRVIVP   64 (132)
T ss_dssp             TSBGGGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECT-----TSCEEEEEEHHHHHHHTTTT
T ss_pred             CCcHHHHcCCCCeEECCcCcHHHHHHHHHHcCCcEEEEecc-----cceeeeeeeHHHHHHHHhhc
Confidence            34688999999999999999999999999999999999997     57899999999999865543

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.54  E-value=3.3e-08  Score=84.31  Aligned_cols=58  Identities=21%  Similarity=0.196  Sum_probs=52.9

Q ss_pred             cCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHHH
Q 013262          369 IDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI  431 (447)
Q Consensus       369 idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~~  431 (447)
                      +.++++|+++++++.+++|+.+|+++|++++++++||+|+     +|+++|+||..|+++...
T Consensus         4 ~~v~~~m~r~v~~v~~~~~l~~a~~~m~~~~~~~lPVvd~-----~~~lvG~it~~Dl~~~~~   61 (156)
T d2yzqa1           4 VEIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDS-----EGNLVGIVDETDLLRDSE   61 (156)
T ss_dssp             CBSTTTSBSCCCCEETTSBHHHHHHHHHTCSSSEEEEECT-----TSCEEEEEEGGGGGGCGG
T ss_pred             CCHHHHhcCCCeEECCcCcHHHHHHHHHHcCCCEEEEEeC-----CCCceeEEeeeechhhhc
Confidence            5688999999999999999999999999999999999987     578999999999976433

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=98.47  E-value=1.2e-07  Score=79.60  Aligned_cols=61  Identities=16%  Similarity=0.211  Sum_probs=54.5

Q ss_pred             CccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHHHhhhc
Q 013262          370 DLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTAF  435 (447)
Q Consensus       370 dl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~~~~~~  435 (447)
                      ++.++|+++|+++.+++++.+|++.|.+.+...+||+|+     +++++|+||..|+++.......
T Consensus         5 ~v~~~m~~~p~~v~~~~~v~~a~~~m~~~~~~~ipVvd~-----~~~~vGiis~~Dl~~~~~~~~~   65 (145)
T d1o50a3           5 DVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVAR-----DNKLVGMIPVMHLLKVSGFHFF   65 (145)
T ss_dssp             HHTTSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEE-----TTEEEEEEEHHHHHHHHHHHHH
T ss_pred             EhHHhCCCCCEEECCcCcHHHHHHHHHHcCCceEEEecc-----Ccceeeeeccchhhhhhhcccc
Confidence            466789999999999999999999999999999999997     5789999999999987665443

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.43  E-value=9.3e-08  Score=78.27  Aligned_cols=57  Identities=18%  Similarity=0.186  Sum_probs=50.6

Q ss_pred             ccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHHHh
Q 013262          371 LHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL  432 (447)
Q Consensus       371 l~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~~~  432 (447)
                      ++++|.++++++.+++++.+|.++|.+.+++.+||+|+     +++++|+||.+|+++....
T Consensus         3 ~~diM~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~-----~~~~~Giit~~Di~~~~~~   59 (123)
T d1y5ha3           3 ARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGD-----DDRLHGMLTDRDIVIKGLA   59 (123)
T ss_dssp             HHHHSEETCCCEETTSBHHHHHHHHHHHTCSEEEEECG-----GGBEEEEEEHHHHHHTTGG
T ss_pred             HHHhcCCCCcEECCcCcHHHHHHHHHHcCCCceEEEec-----cchhhhhhhhhhHhhhhhh
Confidence            45678889999999999999999999999999999987     5789999999999875443

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.42  E-value=1.9e-07  Score=76.66  Aligned_cols=54  Identities=20%  Similarity=0.319  Sum_probs=47.4

Q ss_pred             ccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHHH
Q 013262          375 TNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI  431 (447)
Q Consensus       375 m~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~~  431 (447)
                      |..+|++|+|++++.+|+++|.+.+++++||+|+   .++++++|+||++|+.+...
T Consensus         3 mi~dpvtv~~~~tv~~a~~~m~~~~~~~~pVvD~---~~~~~lvGivt~~Di~~~~~   56 (126)
T d1zfja4           3 VIIDPFFLTPEHKVSEAEELMQRYRISGVPIVET---LANRKLVGIITNRDMRFISD   56 (126)
T ss_dssp             TSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESC---TTTCBEEEEEEHHHHHHCSC
T ss_pred             CEeCceEECCCCCHHHHHHHHHHhCCCcEEEEee---ccCCeEEEEeEHHHHHHhhc
Confidence            4478999999999999999999999999999986   34578999999999987543

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=98.40  E-value=1.3e-07  Score=77.21  Aligned_cols=58  Identities=17%  Similarity=0.217  Sum_probs=52.3

Q ss_pred             CccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHHHh
Q 013262          370 DLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL  432 (447)
Q Consensus       370 dl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~~~  432 (447)
                      .++++|++++.+|++++++.+|+++|++.+.+++||+|+     +|+++|+||.+|+++...+
T Consensus         2 ~v~~~m~~~~~~v~~~~tv~ea~~~m~~~~~~~v~Vvd~-----~~~~~Gii~~~dl~~~~~~   59 (121)
T d1vr9a3           2 KVKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDR-----EGHFRGVVNKEDLLDLDLD   59 (121)
T ss_dssp             BGGGGCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEECT-----TSBEEEEEEGGGGTTSCTT
T ss_pred             CchhhhcCCCeEECCCCCHHHHHHhhhhcCcEEEEEEeC-----CceeEEEeehhhhhhhhcc
Confidence            467899999999999999999999999999999999987     5789999999999865443

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.39  E-value=3.2e-07  Score=77.02  Aligned_cols=59  Identities=20%  Similarity=0.182  Sum_probs=53.9

Q ss_pred             cCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHHHh
Q 013262          369 IDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL  432 (447)
Q Consensus       369 idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~~~  432 (447)
                      +.++++|++++.+|++++++.+|++.|.+.+.+.+||+|+     +++++|+||..|+++....
T Consensus         3 m~v~dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~~V~d~-----~~~~~Giit~~di~~~~~~   61 (142)
T d1pvma4           3 MRVEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDD-----NGNDVGLLSERSIIKRFIP   61 (142)
T ss_dssp             CBGGGTSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECT-----TSCEEEEEEHHHHHHHTGG
T ss_pred             EEHHHhCCCCCcEECCcCcHHHHHHHHHHCCCceEeeecc-----CCcccceEEeechhhhhhh
Confidence            4578899999999999999999999999999999999987     5789999999999987653

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=98.39  E-value=2.7e-07  Score=77.70  Aligned_cols=60  Identities=17%  Similarity=0.317  Sum_probs=55.6

Q ss_pred             cccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHh
Q 013262          252 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK  324 (447)
Q Consensus       252 ~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~  324 (447)
                      ..+++++|.+  +++++++++++.++++.|.+++.+.+||||++           |+++|+|+++|+++++..
T Consensus        64 ~~~v~~im~~--~~~~v~~~~~~~~a~~~m~~~~~~~lPVVd~~-----------g~lvGiIt~~Dil~~l~~  123 (144)
T d2yvxa2          64 RTRVAEIMNP--KVVYVRTDTDQEEVARLMADYDFTVLPVVDEE-----------GRLVGIVTVDDVLDVLEA  123 (144)
T ss_dssp             TCBSTTTSBS--SCCCEESSCCHHHHHHHHHHSCCSEEEEECSS-----------CBEEEEEEHHHHHHHHHH
T ss_pred             ccchHHhccc--CCccCCCCChHHHHHHHHHHcCCCEEEEEeEC-----------CEEEEEEEHHHHHHHHHH
Confidence            4678999999  99999999999999999999999999999987           899999999999987754

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=98.36  E-value=5.2e-07  Score=76.56  Aligned_cols=64  Identities=11%  Similarity=0.212  Sum_probs=57.0

Q ss_pred             ccCccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHHHhhh
Q 013262          368 YIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTA  434 (447)
Q Consensus       368 ~idl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~~~~~  434 (447)
                      .+.++++|.+++++|++++++.+|+++|++.+.+++||+|+   ++++.++|++|+.|+++...+..
T Consensus        10 ~~~V~diM~~~~~~v~~~~tv~e~~~~l~~~~~~~~PVvd~---~~~~~lvg~is~~dl~~~l~~~~   73 (160)
T d2d4za3          10 NIQVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDT---PDTNTLLGSIDRTEVEGLLQRRI   73 (160)
T ss_dssp             SCBTTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESC---TTTCBEEEEEEHHHHHHHHHHHH
T ss_pred             ceEHHHhcCCCCeEECCCCcHHHHHHHHHhcCCCccccccc---cccccccccchHHHHHHHHhhcc
Confidence            45788999999999999999999999999999999999986   33568999999999998877644

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.35  E-value=5.3e-08  Score=79.74  Aligned_cols=63  Identities=19%  Similarity=0.268  Sum_probs=36.5

Q ss_pred             CccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHHHhhhcCc
Q 013262          370 DLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTAFPH  437 (447)
Q Consensus       370 dl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~~~~~~~~  437 (447)
                      .++++|.++|+++++++++.+|+++|.+.+.+++||+|+     +|+++|+||.+|++.+..+.....
T Consensus         2 ~v~diM~~~~v~v~~~~~v~~a~~~m~~~~~~~~~Vvd~-----~~~~~G~it~~dl~~~~~~~~~~~   64 (122)
T d2yzqa2           2 RVKTIMTQNPVTITLPATRNYALELFKKYKVRSFPVVNK-----EGKLVGIISVKRILVNPDEEQLAM   64 (122)
T ss_dssp             BHHHHSEESCCCEESSCC------------CCEEEEECT-----TCCEEEEEESSCC----------C
T ss_pred             CcccccCCCCEEECCcCcHHHHHHHHHHcCCcEEEEEec-----cccchhhhhcchhhhhhcccchhh
Confidence            356678899999999999999999999999999999987     678999999999998765544433

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.34  E-value=3.3e-07  Score=74.54  Aligned_cols=57  Identities=18%  Similarity=0.085  Sum_probs=51.2

Q ss_pred             ccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHHHhh
Q 013262          371 LHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILT  433 (447)
Q Consensus       371 l~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~~~~  433 (447)
                      ++++|.++++++++++++.+|++.|.+.+.+++||+++      |+++|+||++|+++++.+.
T Consensus         2 V~diM~~~~~~v~~~~sl~ea~~~~~~~~~~~~~V~~~------~~~~Gvit~~Di~~~l~~~   58 (120)
T d1pbja3           2 VEDVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVKE------GVRVGIVTTWDVLEAIAEG   58 (120)
T ss_dssp             HHHHCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEET------TEEEEEEEHHHHHHHHHHT
T ss_pred             hHHhCCCCCeEECCcCcHHHHHHHHHHcCceEEEEEeC------CcEEEEEEeeecccccccc
Confidence            45688899999999999999999999999999999874      5799999999999987654

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.32  E-value=3.9e-07  Score=75.99  Aligned_cols=58  Identities=22%  Similarity=0.257  Sum_probs=53.0

Q ss_pred             CccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHHHh
Q 013262          370 DLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL  432 (447)
Q Consensus       370 dl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~~~  432 (447)
                      +++++|++++.+|++++|+.+|.++|.+.+.+++||+|+     +++++|+||..|+.+....
T Consensus         3 ~V~~iMt~~v~~v~~~~tl~~a~~~m~~~~~~~ipVv~~-----~~~~~g~i~~~di~~~~~~   60 (141)
T d3ddja1           3 PVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDD-----DNKVVGIVTVVNAIKQLAK   60 (141)
T ss_dssp             BHHHHSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECT-----TSCEEEEEEHHHHHHHHHH
T ss_pred             eeHHhCcCCCeEEcCcCcHHHHHHHHHHcCCCeeecccc-----cCccccccccccchhhhhc
Confidence            567889999999999999999999999999999999987     5789999999999887654

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=98.29  E-value=3.5e-07  Score=75.61  Aligned_cols=52  Identities=10%  Similarity=0.093  Sum_probs=47.2

Q ss_pred             CCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHHHhh
Q 013262          377 TTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILT  433 (447)
Q Consensus       377 ~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~~~~  433 (447)
                      ....++.+++++++|+++|.++|.+++||+|+     +|+++|+||++|+++++.+.
T Consensus        12 ~~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd~-----~~~~vGiit~~di~~~~~~~   63 (132)
T d1yava3          12 DKVAHVQVGNNLEHALLVLTKTGYTAIPVLDP-----SYRLHGLIGTNMIMNSIFGL   63 (132)
T ss_dssp             GGSCCEETTCBHHHHHHHHHHHCCSEEEEECT-----TCBEEEEEEHHHHHHHHBCS
T ss_pred             cceEEEcCCCCHHHHHHHHHhhCCCceEEeec-----ccccccEEEcchhHHHhhcc
Confidence            56689999999999999999999999999987     57899999999999987653

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.29  E-value=2e-07  Score=77.24  Aligned_cols=61  Identities=13%  Similarity=0.283  Sum_probs=55.9

Q ss_pred             cccccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHH
Q 013262          250 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALK  323 (447)
Q Consensus       250 l~~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~  323 (447)
                      +...+++++|.+  +++++++++++.++.+.|.+++.+.+||+|++           |+++|+|+++|+++++.
T Consensus        71 ~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~-----------g~lvGiit~~Dil~~~~  131 (135)
T d3ddja2          71 ISTTPIIDYMTP--NPVTVYNTSDEFTAINIMVTRNFGSLPVVDIN-----------DKPVGIVTEREFLLLYK  131 (135)
T ss_dssp             HHTSBGGGTSEE--SCCCEETTSCHHHHHHHHHHHTCSEEEEECTT-----------SCEEEEEEHHHHGGGGG
T ss_pred             cccCCHHHHhCC--ccceEEeccccchhhhhhhhcceeEEEEEeCC-----------CEEEEEEEHHHHHHHHH
Confidence            456789999999  99999999999999999999999999999987           89999999999987654

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=98.29  E-value=5.1e-07  Score=74.10  Aligned_cols=60  Identities=20%  Similarity=0.363  Sum_probs=54.9

Q ss_pred             cccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHh
Q 013262          252 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK  324 (447)
Q Consensus       252 ~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~  324 (447)
                      +.+++++|.+  ++.++++++++.++.+.|.+++.+.+||+|++           |+++|+||+.||++++.+
T Consensus        66 ~~~v~~~~~~--~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~-----------~~lvGiit~~Dll~~i~~  125 (127)
T d2ef7a1          66 ETKAEEFMTA--SLITIREDSPITGALALMRQFNIRHLPVVDDK-----------GNLKGIISIRDITRAIDD  125 (127)
T ss_dssp             TCBGGGTSEE--CCCCEETTSBHHHHHHHHHHHTCSEEEEECTT-----------SCEEEEEEHHHHHHHHHH
T ss_pred             cchhhhhhhh--hccccccccchhHHHHHHHHcCceEEEEEeCC-----------CeEEEEEEHHHHHHHHHh
Confidence            4578999998  88999999999999999999999999999887           899999999999987753

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=98.29  E-value=5.4e-07  Score=74.18  Aligned_cols=61  Identities=8%  Similarity=0.133  Sum_probs=53.8

Q ss_pred             CccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHHHhh
Q 013262          370 DLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILT  433 (447)
Q Consensus       370 dl~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~~~~  433 (447)
                      .++++|.++|+++++++++.+|+++|.+.+..++||++.   +++++++|++|..|+.++..+.
T Consensus         2 ~V~dim~~~~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~---d~~~~~iGi~~~~dl~~~~~~~   62 (131)
T d2riha1           2 RTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTAR---DNPKRPVAVVSERDILRAVAQR   62 (131)
T ss_dssp             BGGGGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEET---TEEEEEEEEEEHHHHHHHHHTT
T ss_pred             CHHHhccCCCEEECCCCcHHHHHHHHHHhCCCcEEEEEE---cCCCEEEEEEeeeccccccccc
Confidence            467899999999999999999999999999999999964   3357899999999999876654

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.23  E-value=1.3e-06  Score=72.86  Aligned_cols=58  Identities=9%  Similarity=0.093  Sum_probs=51.1

Q ss_pred             ccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHHHhh
Q 013262          371 LHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILT  433 (447)
Q Consensus       371 l~~im~~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~~~~  433 (447)
                      +..++..+..++.+++++.+|+++|.+.+.+++||+|+     +|+++|+||+.|+++.....
T Consensus        11 l~~~~~~~v~tv~~~~~v~~a~~~m~~~~~~~ipVvd~-----~~~~vG~it~~Di~~~~~~~   68 (140)
T d2nyca1          11 LNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDE-----NGYLINVYEAYDVLGLIKGG   68 (140)
T ss_dssp             SSCCBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECT-----TCBEEEEEEHHHHHHHHHTC
T ss_pred             hCCccCCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEec-----CCeEcceehhhHHHHHHhhc
Confidence            44567788899999999999999999999999999997     56899999999999876543

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=98.15  E-value=1.8e-06  Score=70.72  Aligned_cols=58  Identities=19%  Similarity=0.271  Sum_probs=53.0

Q ss_pred             ccccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHH
Q 013262          251 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLAL  322 (447)
Q Consensus       251 ~~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L  322 (447)
                      .+.+++++|++  ++.++++++++.++.+.|.+.+.+.+||+|+            |+++|+||+.|+++.+
T Consensus        68 ~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~------------~~~~GiIt~~Dil~~~  125 (127)
T d2rc3a1          68 KDTQVKEIMTR--QVAYVDLNNTNEDCMALITEMRVRHLPVLDD------------GKVIGLLSIGDLVKDA  125 (127)
T ss_dssp             GGSBGGGTSBC--SCCCBCTTCBHHHHHHHHHHHTCSEEEEEET------------TEEEEEEEHHHHHHHH
T ss_pred             cceeEeeeccc--eeEEeccCccHHHHHHHHHHCCCcEEEEEEC------------CEEEEEEEHHHHHHHH
Confidence            45789999999  9999999999999999999999999999984            7999999999998754

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.10  E-value=2.8e-06  Score=71.80  Aligned_cols=52  Identities=8%  Similarity=0.068  Sum_probs=47.3

Q ss_pred             CCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHHHhh
Q 013262          377 TTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILT  433 (447)
Q Consensus       377 ~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~~~~  433 (447)
                      .+++++.+++++.+|+++|.+.+.+++||+|+     +++++|+||+.|+++.....
T Consensus        12 ~~vv~v~~~~~v~~a~~~m~~~~~~~lpVvd~-----~~~~vG~it~~Dl~~~~~~~   63 (153)
T d2ooxe2          12 SNLATASMETKVYDVIKMLAEKNISAVPIVNS-----EGTLLNVYESVDVMHLIQDG   63 (153)
T ss_dssp             SSCCCBCTTSBHHHHHHHHHHTTCSEEEEECG-----GGBEEEEEEHHHHHHHHGGG
T ss_pred             CCCeEEeCcCcHHHHHHHHHHcCcceEeeecc-----cceEEEEEEeeeeeehhccc
Confidence            57889999999999999999999999999997     57899999999999876644

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=4.1e-06  Score=71.93  Aligned_cols=61  Identities=18%  Similarity=0.327  Sum_probs=54.8

Q ss_pred             cccccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHh
Q 013262          250 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK  324 (447)
Q Consensus       250 l~~l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~  324 (447)
                      ....+++++|.+  ++.++++++++.++.++|.+++.+.+||+++            |+++|+|+++|+++++.+
T Consensus        97 ~~~~~v~~im~~--~~~tv~~~~~l~~v~~~~~~~~~~~l~V~d~------------g~lvGiIt~~Dil~~l~~  157 (169)
T d2j9la1          97 PPTLKLRNILDL--SPFTVTDLTPMEIVVDIFRKLGLRQCLVTHN------------GRLLGIITKKDVLKHIAQ  157 (169)
T ss_dssp             CCCEECGGGEES--SCCEEETTSBHHHHHHHHHHHTCSEEEEEET------------TEEEEEEEHHHHHHHHHH
T ss_pred             ccccchhhhccC--CCEEECCCCcHHHHHHHHHhcCceEEEEEEC------------CEEEEEEEHHHHHHHHHH
Confidence            345779999999  8999999999999999999999999999874            799999999999988754

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.05  E-value=1.9e-06  Score=69.89  Aligned_cols=58  Identities=16%  Similarity=0.322  Sum_probs=43.9

Q ss_pred             ccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHH
Q 013262          253 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLA  321 (447)
Q Consensus       253 l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~  321 (447)
                      .++.++|....+++++++++++.++.++|.+++.+.+||||++           ++++|+||++|+++.
T Consensus        61 ~~~~~~~~~~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVVd~~-----------~~lvGiiT~~Di~k~  118 (120)
T d1jr1a4          61 RFLEEIMTKREDLVVAPAGITLKEANEILQRSKKGKLPIVNEN-----------DELVAIIARTDLKKN  118 (120)
T ss_dssp             -----CCSBTTTSCCEETTCCHHHHHHHTCSCC---CEEEETT-----------TEEEEEECHHHHHHH
T ss_pred             ceeEEEEeeccCceEECCCCCHHHHHHHHHHcCccEEEEEcCC-----------CEEEEEEEHHHhhhc
Confidence            3455555443378899999999999999999999999999987           899999999999763

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.90  E-value=9.8e-06  Score=67.52  Aligned_cols=58  Identities=19%  Similarity=0.194  Sum_probs=50.9

Q ss_pred             ccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHH
Q 013262          253 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALK  323 (447)
Q Consensus       253 l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~  323 (447)
                      .++.+.|.+  +++++.+++++.++++.|.+++.+.+||+|++           |+++|+||++||.+++-
T Consensus        84 ~~~~~~~~~--~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~-----------g~l~GiVt~~dii~~lv  141 (145)
T d2v8qe1          84 LQHRSHYFE--GVLKCYLHETLEAIINRLVEAEVHRLVVVDEH-----------DVVKGIVSLSDILQALV  141 (145)
T ss_dssp             GGGCCSCCC--SCCEECTTSBHHHHHHHHHHHTCSEEEEECTT-----------SBEEEEEEHHHHHHHHH
T ss_pred             cchhhhccC--CCeEECCCCcHHHHHHHHHHcCceEEEEEccC-----------CEEEEEEEHHHHHHHHH
Confidence            345566777  88899999999999999999999999999887           89999999999998764

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.63  E-value=2.9e-05  Score=65.44  Aligned_cols=60  Identities=15%  Similarity=0.120  Sum_probs=52.3

Q ss_pred             ccccccccCCCCeeEecCCCCHHHHHHHHhcCCCCeEEEecCCCCCCCCCCCCCceEEEEEeHHHHHHHHHh
Q 013262          253 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK  324 (447)
Q Consensus       253 l~v~diM~~~~~vv~l~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~~~~~~~~lvGiIt~~dL~~~L~~  324 (447)
                      ..+.++|.+  +++++++++++.++++.|.+++.+.+||+|++          +|+++|+||.+||++.|..
T Consensus        96 ~~~~~~~~~--~~~~v~~~~~l~~v~~~m~~~~~~~v~Vvd~~----------~g~~~GivT~~dilk~l~~  155 (159)
T d2v8qe2          96 EVYLQDSFK--PLVCISPNASLFDAVSSLIRNKIHRLPVIDPE----------SGNTLYILTHKRILKFLKL  155 (159)
T ss_dssp             HHHSSSSCC--CCCCBCTTSBHHHHHHHHHHHTCSCEEEECTT----------TCCEEEEECHHHHHHHHHH
T ss_pred             ceeeeeecc--ceEEECCCCcHHHHHHHHHHhCCeEEEEEECC----------CCeEEEEEeHHHHHHHHHH
Confidence            345678888  89999999999999999999999999999853          2899999999999987743

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=97.58  E-value=2.5e-05  Score=67.27  Aligned_cols=52  Identities=12%  Similarity=0.059  Sum_probs=45.7

Q ss_pred             CCCceecCCCCHHHHHHHHHHcCCCEEEEEeCcccCCCCcEEEEEeHHHHHHHHHh
Q 013262          377 TTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL  432 (447)
Q Consensus       377 ~~p~tV~~~~sL~~a~~lf~~~gl~~LpVVd~~~~~g~~~lvGIITr~DLl~~~~~  432 (447)
                      ...+++++++|+.+|++.|.+.+++.+||+|+   + +++++|+||.+|+++....
T Consensus        30 ~~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd~---~-~~~~vGiis~~Di~~~l~~   81 (179)
T d2ooxe1          30 FRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDS---E-ANKFAGLLTMADFVNVIKY   81 (179)
T ss_dssp             EEEEEEETTSBHHHHHHHHHHHTCSCEEEEET---T-TTEEEEEECHHHHHHHHHH
T ss_pred             CcEEEEECcchHHHHHHHHHHcCCCeEEEEeC---C-CCeeEEEEeechHHHHHHh
Confidence            35689999999999999999999999999985   2 4689999999999987553