Citrus Sinensis ID: 013265

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440------
Protein Sequence
MRSEGDHINELPDDILVNILSRLTMKEAVRTSIISSRWRYLWRGFSGCLNFDDPFTMANSKWPHLNLKSGPINVERHKFVNWVNQVLSSLEGHCTEELRICFDVFSNHDIDNWIKFALERRVRRLELDFSRVVYNLRFVGQYTFPSHLDFYSSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQLHAPNLLSFEYSGPILPFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTIKDQPYLSFTELRSIRVVELLGFVGHTADFELVMYLIFSAKLLEKIIIDPCPTWRVGTPAELIWRETAEYQSARRRAFELAAKFPLWEFVIP
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccEEEEEEcccccccHHHHHHHHHHccccEEEEEEcccccccccccccccccccccccccccccEEEEEEEEEcHHHHHHHHHHccccccEEEEEEcccccEEEEEcccccEEEEEEEEEccccEEEEEccEEEEEEEEcccccEEEccccccEEEEEEccccHHHHHHHHcccccccccccccccccEEEEccEEEEcccccccccccccEEEEEEEEccccccHHHHHHHHHHcccccEEEEEEEEccccccccccccccccccccccccccEEEEEEEcEEccHHHHHHHHHHHHcccccccEEEEEccccccccHHHHcHHHHHHHHHHHHHHHHccccccccEEEcc
Secondary Structure Prediction (SSPRO)
cccccccHccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHcHHHHHHHHHHHHHHHHcccccEEEEEEEEcccccHHHHHHHHHHHHccccEEEEEEccccccccccccEEEccccccccccHcccEEEEEEEEEccHHHHHHHHHcccHHHEEEEEEcccEEEEEEEccccEEEEEEEEccccccEEEEEcccEEEEEEccccccEEEEcccccEEEEEEEEcccccHHHHHHHHHHHcccccHEEEEEEcccccccccccccccccccEEEEEEEEEEEccccHHHHHHHHHHHccccccEEEEEEccccccccccccccccccccccHHccccEEEEEEEcccccHHHHHHHHHHHHHHHHHHEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccEccc
Coil and Loop (DISEMBL)
mrsegdhinelpdDILVNILSRLTMKEAVRTSIISSRWRYLWrgfsgclnfddpftmanskwphlnlksgpinverhKFVNWVNQVLSSLEGHCTEELRICFDvfsnhdidNWIKFALERRVRRLELDFSRVVYNLRFvgqytfpshldfyssfrhltdlslttvGITGEVLEHLLCYCCPVLEVLNVaesssltslkvsgpslklkhlklnkldnlkdlqlhapnllsfeysgpilpfsfrnvpnlvdasfWGCFSAYIAKNLCQHSIFLVQLHTlkldtchlligdseyragrylhdipemcnlkhleiigtpkVNDLIFCIALLEAAPSLYKFSLKLVSQYdyesyesvktikdqpylsfteLRSIRVVELLGFVGHTADFELVMYLIFSAKLLEKiiidpcptwrvgtpaeLIWRETAEYQSARRRAFELAAkfplwefvip
Flexible Loop (DISEMBL)
mrsegdhinelpddiLVNILSRLTMKEAVRTSIISSRWRYLWRGFSGCLNFDDPFTMANSKWPHLNLKSGPINVERHKFVNWVNQVLSSLEGHCTEELRICFDVFSNHDIDNWIKFALERRVRRLELDFSRVVYNLRFVGQYTFPSHLDFYSSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTslkvsgpslklKHLKLNKLDNLKDLQLHAPNLLSFEYSGPILPFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLVSQYDYESYEsvktikdqpylsFTELRSIRVVELLGFVGHTADFELVMYLIFSAKLLEKIIIDPCPTWRVGTPAELIWRETAEYQSARRRAFELaakfplwefvip
Low Complexity Region (SEG)
MRSEGDHINELPDDILVNILSRLTMKEAVRTSIISSRWRYLWRGFSGCLNFDDPFTMANSKWPHLNLKSGPINVERHKFVNWVNQVLSSLEGHCTEELRICFDVFSNHDIDNWIKFALERRVRRLELDFSRVVYNLRFVGQYTFPSHLDFYSSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSlklkhlklnkldnlkdlqlhAPNLLSFEYSGPILPFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTIKDQPYLSFTELRSIRVVELLGFVGHTADFELVMYLIFSAKLLEKIIIDPCPTWRVGTPAELIWRETAEYQSARRRAFELAAKFPLWEFVIP
Disordered region (IsUnstruct)
**********LPDDILVNILSRLTMKEAVRTSIISSRWRYLWRGFSGCLNFDDPFTMANSKWPHLNLKSGPINVERHKFVNWVNQVLSSLEGHCTEELRICFDVFSNHDIDNWIKFALERRVRRLELDFSRVVYNLRFVGQYTFPSHLDFYSSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQLHAPNLLSFEYSGPILPFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTIKDQPYLSFTELRSIRVVELLGFVGHTADFELVMYLIFSAKLLEKIIIDPCPTWRVGTPAELIWRETAEYQSARRRAFELAAKFPLWEFVI*
Disordered Region (DISOPRED)
*RSEGDHINELPDDILVNILSRLTMKEAVRTSIISSRWRYLWRGFSGCLNFDDPFTMANSKWPHLNLKSGPINVERHKFVNWVNQVLSSLEGHCTEELRICFDVFSNHDIDNWIKFALERRVRRLELDFSRVVYNLRFVGQYTFPSHLDFYSSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQLHAPNLLSFEYSGPILPFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTIKDQPYLSFTELRSIRVVELLGFVGHTADFELVMYLIFSAKLLEKIIIDPCPTWRV*********************FELAAKFPLWEFVIP
Disordered Region (DISEMBL)
********NELPDDILVNILSRLTMKEAVRTSIISSRWRYLWRGFSGCLNFDDPFTMANSKWPHLNLKSGPINVERHKFVNWVNQVLSSLEGHCTEELRICFDVFSNHDIDNWIKFALERRVRRLELDFSRVVYNLRFVGQYTFPSHLDFYSSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQLHAPNLLSFEYSGPILPFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTIKDQPYLSFTELRSIRVVELLGFVGHTADFELVMYLIFSAKLLEKIIIDPCPTWRVGTPAELIWRETAEYQSARRRAFELAAKFPLWEFVIP
Disordered Region (DISPRO)
*****DHINELPDDILVNILSRLTMKEAVRTSIISSRWRYLWRGFSGCLNFDDPFTMANS******LKSGPINVERHKFVNWVNQVLSSLEGHCTEELRICFDVFSNHDIDNWIKFALERRVRRLELDFSRVVYNLRFVGQYTFPSHLDFYSSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQLHAPNLLSFEYSGPILPFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTIKDQPYLSFTELRSIRVVELLGFVGHTADFELVMYLIFSAKLLEKIIIDPCPTWRVGTPAELIWRETAEYQSARRRAFELAAKFPLWEFVIP
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRSEGDHINELPDDILVNILSRLTMKEAVRTSIISSRWRYLWRGFSGCLNFDDPFTMANSKWPHLNLKSGPINVERHKFVNWVNQVLSSLEGHCTEELRICFDVFSNHDIDNWIKFALERRVRRLELDFSRVVYNLRFVGQYTFPSHLDFYSSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQLHAPNLLSFEYSGPILPFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTIKDQPYLSFTELRSIRVVELLGFVGHTADFELVMYLIFSAKLLEKIIIDPCPTWRVGTPAELIWRETAEYQSARRRAFELAAKFPLWEFVIP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	446	2.2.26 [Sep-21-2011]
Q9LV26	456	Putative F-box/LRR-repeat	no	no	0.558	0.546	0.269	4e-12
Q9LZ15	456	Putative F-box/LRR-repeat	yes	no	0.484	0.473	0.273	2e-11
Q9LSJ3	465	Putative F-box/LRR-repeat	no	no	0.484	0.464	0.269	3e-11
Q9FGQ3	444	F-box/FBD/LRR-repeat prot	no	no	0.804	0.808	0.224	7e-11
Q9FZ70	416	F-box/FBD/LRR-repeat prot	no	no	0.464	0.497	0.255	7e-11
Q9LXR4	454	Putative F-box/LRR-repeat	no	no	0.495	0.486	0.3	8e-11
Q0WR05	457	F-box/LRR-repeat protein	no	no	0.484	0.472	0.280	2e-10
Q84W80	481	F-box/LRR-repeat protein	no	no	0.396	0.367	0.282	4e-10
Q9FM89	422	F-box/FBD/LRR-repeat prot	no	no	0.809	0.855	0.243	2e-09
Q9LJ48	463	Putative F-box protein At	no	no	0.517	0.498	0.283	4e-09

>sp|Q9LV26|FBL45_ARATH Putative F-box/LRR-repeat protein At3g18150 OS=Arabidopsis thaliana GN=At3g18150 PE=4 SV=2

 Score = 73.2 bits (178), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 81/301 (26%), Positives = 132/301 (43%), Gaps = 52/301 (17%)

Query: 1   MRSEGDHINELPDDILVNILSRLTMKEAVRTSIISSRWRYLWRGFSGCLNFDDPFTMANS 60
           ++   D I+ LPD IL +ILS +  K A+ TS++S RWR++W   +  L+F+D    A  
Sbjct: 26  IKEAVDSISSLPDVILQHILSFIPTKLAITTSLLSKRWRHVWCD-TPSLSFNDYRLEAPF 84

Query: 61  KWPHLNLKSGPINVERHKFVNWVNQVLSSLEGHCTEELRICFDVFSNHDIDNWIKFALER 120
               L   +    +  H   + +N V                       +++WIKFA+ R
Sbjct: 85  IDETLTRYTASKMMRFHLHTSLINNV---------------------PHLESWIKFAMSR 123

Query: 121 RVRRLELDFSRVVYNLRFVGQYTFPSHLDFYSSFRHLT---------------DLSLTTV 165
            V  L LD    V N     ++ FP      SS + LT                L L+T 
Sbjct: 124 NVDHLSLDLWNQVAN-----KFKFPDFFHINSSLKQLTVVLDFSDTMIAICLKKLYLSTC 178

Query: 166 GITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNK---LDNLKDLQL 222
            ++ E + ++L + CP+LE L +     L  L +S  SL+L+ L++N    +  L  +Q+
Sbjct: 179 LLSDESMANIL-FGCPILESLTLDHCGGLRVLDLSK-SLRLRTLEINCNIWVPELTAMQI 236

Query: 223 HAPNLLSFEYSGPILPFSFRNVPNLVDASFWGC---FSAYIAKNLCQHSIF--LVQLHTL 277
            AP+          LP S  +V +L +A    C   FS  I  +  Q ++   L +LH +
Sbjct: 237 VAPHTHCLRLRNSKLPCSLVDVSSLKEAKLNICIDSFSKTIKADFLQVTLLKMLEKLHNV 296

Query: 278 K 278
           +
Sbjct: 297 E 297

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LZ15|FBL78_ARATH Putative F-box/LRR-repeat protein At5g02700 OS=Arabidopsis thaliana GN=At5g02700 PE=4 SV=1

 Score = 71.2 bits (173), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 74/271 (27%), Positives = 120/271 (44%), Gaps = 55/271 (20%)

Query: 5   GDHINELPDDILVNILSRLTMKEAVRTSIISSRWRYLWRGFSGCLNFDDPFTMANSKWPH 64
            D IN +PDDIL +ILS +    A+RTS++S RWR++W   + CL+              
Sbjct: 26  ADFINYMPDDILHHILSFIPTDLAMRTSVLSRRWRHVW-CETPCLD-------------- 70

Query: 65  LNLKSGPINVERHKFVNWVNQVLSSLEGHCTEELRICFDVFSNH--DIDNWIKFALERRV 122
           + LK G +           NQ L+S         ++  D+ SN    +D+WI+FAL R V
Sbjct: 71  ITLKHGAM-----------NQTLTSYTAPIITSFKLVMDLNSNTVPQVDSWIEFALSRNV 119

Query: 123 RRLELDFSRVVYNLRFVGQYTFPS-------------HLDFYS-------SFRHLTDLSL 162
           + L    S  V +  +   Y FP               LDF+        S++ L +L+L
Sbjct: 120 QNL----SVFVRDFTYSKTYRFPDIFYLSSSLKLLDVTLDFFDMIPTCTVSWKSLRNLTL 175

Query: 163 TTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLN-KLDNLKDLQ 221
               I  E + ++L   CP+LE L +     L  L +S  S  L+ L +N +      + 
Sbjct: 176 RFCQIPDESIHNILS-GCPILESLTLDTCRLLERLDLSK-SPNLRRLDINQQYRRTGPVA 233

Query: 222 LHAPNLLSFEYSGPILPFSFRNVPNLVDASF 252
           + AP++     +    P +  +V +L +A+ 
Sbjct: 234 IVAPHIYYLRLTYSSTPSTIVDVSSLSEANL 264

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LSJ3|FBL48_ARATH Putative F-box/LRR-repeat protein At3g28410 OS=Arabidopsis thaliana GN=At3g28410 PE=4 SV=2

 Score = 70.5 bits (171), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 73/271 (26%), Positives = 118/271 (43%), Gaps = 55/271 (20%)

Query: 5   GDHINELPDDILVNILSRLTMKEAVRTSIISSRWRYLWRGFSGCLNFDDPFTMANSKWPH 64
            D IN +PDDIL +ILS +    A+RTS++S RWR++W   + CL+              
Sbjct: 27  ADFINYMPDDILHHILSFIPTDLAMRTSVLSRRWRHVW-CETPCLD-------------- 71

Query: 65  LNLKSGPINVERHKFVNWVNQVLSSLEGHCTEELRICFDVFSNH--DIDNWIKFALERRV 122
           + LK G             NQ L+S         ++  D+  N    +D+WI+FAL R V
Sbjct: 72  IKLKHGE-----------TNQTLTSYTAPIITSFKLVMDLNDNTVPQVDSWIEFALSRNV 120

Query: 123 RRLELDFSRVVYNLRFVGQYTFPS-------------HLDFYS-------SFRHLTDLSL 162
           + L    S  V +  +   Y FP               LDF+        S++ L +L+L
Sbjct: 121 QNL----SVFVRDFTYTKTYRFPDIFYISSSLKQLDVTLDFFDMIPTCAVSWKSLRNLTL 176

Query: 163 TTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNK-LDNLKDLQ 221
               I  E + ++L   CP+LE L +     L  L +S  S  L+ L +N+       + 
Sbjct: 177 RFCQIPDESMHNILS-GCPILESLTLDTCRLLERLDLSK-SPNLRRLDINRQYRRTGPIA 234

Query: 222 LHAPNLLSFEYSGPILPFSFRNVPNLVDASF 252
           + AP++     +    P +  +V +L +A+ 
Sbjct: 235 IVAPHIYYLRLTYSSTPSTIVDVSSLSEANL 265

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FGQ3|FDL37_ARATH F-box/FBD/LRR-repeat protein At5g53840 OS=Arabidopsis thaliana GN=At5g53840 PE=2 SV=1

 Score = 68.9 bits (167), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 97/433 (22%), Positives = 189/433 (43%), Gaps = 74/433 (17%)

Query: 3   SEGDHINELPDDILVNILSRLTMKEAVRTSIISSRWRYLWRGFSGCLNFDDPFTMANSKW 62
           SE + +++LPD ++  ILS L+ K+AVRTSI+S+RWR LW+     L+FD     + S  
Sbjct: 15  SEEERLSQLPDHLICVILSHLSTKDAVRTSILSTRWRNLWQ-LVPVLDFDSRELRSFS-- 71

Query: 63  PHLNLKSGPINVERHKFVNWVNQVLSSLEGHCTEELRIC-FDVFSNHDIDNWIKFALERR 121
                          +FV++        +    ++LR+C +D+  N+ + +WI      R
Sbjct: 72  ---------------EFVSFAGSFFYLHKDSYIQKLRVCIYDLAGNYYLTSWIDLVTRHR 116

Query: 122 VRRLELD-FSRVVYNLRFVGQYTFPS--HLDF---------YSSFRHLTDLSLTTVGITG 169
           ++ +++  F+   + +  +  YT  +  HL           + S   L  L L  V  T 
Sbjct: 117 IQHIDISVFTCSGFGVIPLSLYTCDTLVHLKLSRVTMVNVEFVSLPCLKILDLDFVNFTN 176

Query: 170 EVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNK---------LDN--LK 218
           E     +  C PVLE L + +SS      +   S  LK +++++         +D   L+
Sbjct: 177 ETTLDKIISCSPVLEELTIVKSSEDNVKIIQVRSQTLKRVEIHRRFDRHNGLVIDTPLLQ 236

Query: 219 DLQLHAPNLLSFEY------SGPILPFSFRNVPNLVDASFWGCFSAYIAKN---LCQHSI 269
            L + A ++ S E+      +   +  +  +  +L + S    F   I++    + +H  
Sbjct: 237 FLSIKAHSIKSIEFINLGFTTKVDIDVNLLDPNDLSNRSMTRDFFTTISRVRSLVIRHGT 296

Query: 270 FLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTPKVNDLIFCIALLEA 329
                H ++L+               YL ++  +C++ +LE++           + LL++
Sbjct: 297 IKDIFHYMELEPLQQFC---------YLSELSAVCSISNLEML-----------LNLLKS 336

Query: 330 APSLYKFSLKLVSQYDYESYESVKTIKDQPYLSFTELRSIRVVELLGFVGHTADFELVMY 389
            P L   SLKLV  Y+    E V +    P    + L+ +++   L  +G   + ++  Y
Sbjct: 337 CPKLESLSLKLV-DYEKNKKEEVMSSTVPPPCLVSSLKFVKLESQL--LGCGTELKVARY 393

Query: 390 LIFSAKLLEKIII 402
            + ++ +LEK+ +
Sbjct: 394 FLENSTILEKLTL 406

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FZ70|FDL1_ARATH F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidopsis thaliana GN=At1g13570 PE=2 SV=1

 Score = 68.9 bits (167), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 65/254 (25%), Positives = 113/254 (44%), Gaps = 47/254 (18%)

Query: 1   MRSEGDHINELPDDILVNILSRLTMKEAVRTSIISSRWRYLWRGFSGCLNFDDPFTMANS 60
           M    D I++LP  I+ NIL+RL++++A+RTS++SS+WRY W   +  +  +   + +N 
Sbjct: 1   MGESPDFISDLPQSIIENILTRLSIRDAIRTSVLSSKWRYKWSTLTDLVFDEKCVSPSND 60

Query: 61  KWPHLNLKSGPINVERHKFVNWVNQVLSSLEGHCTE-ELRICFDVFSNHDIDNWIKFALE 119
           +            V     V ++  VL   +G   + +L   F      DID W+ F   
Sbjct: 61  RC-----------VVETNLVRFITGVLLLHQGPIHKFQLSTSFKQ-CRPDIDQWLLFLSR 108

Query: 120 RRVRRLELDFSRVVYNLRFVGQYTFPSHL-------------------DFYSSFRHLTDL 160
             ++ L L            G++  P+ L                    ++  F +L  L
Sbjct: 109 NGIKELVLKLGE--------GEFRVPACLFNCLKLTCLELCHCEFDPPQYFKGFSYLKSL 160

Query: 161 SLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDL 220
           +L  + +  EV+E L+   CP+LE L+++   SL  L +S P+L   +L        KD+
Sbjct: 161 NLHQILVAPEVIESLIS-GCPLLEFLSLSYFDSLV-LSISAPNLMYLYLD----GEFKDI 214

Query: 221 QL-HAPNLLSFEYS 233
            L + P L++   S
Sbjct: 215 FLENTPKLVAISVS 228

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LXR4|FBL56_ARATH Putative F-box/LRR-repeat protein At3g58880 OS=Arabidopsis thaliana GN=At3g58880 PE=4 SV=1

 Score = 68.9 bits (167), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 81/270 (30%), Positives = 114/270 (42%), Gaps = 49/270 (18%)

Query: 6   DHINELPDDILVNILSRLTMKEAVRTSIISSRWRYLWRGFSGCLNFDDPFTMANSKWPHL 65
           D ++ LPDD+L +ILS LT KEA  TSI+S RWRYL   F   L FDD           L
Sbjct: 3   DLVSSLPDDLLGHILSLLTTKEAALTSILSKRWRYLI-AFVPYLEFDDS--------AFL 53

Query: 66  NLKSGPINVE--RHKFVNWVNQVLSSLEGHCTEELRICFDVFSNHDID---NWIKFALER 120
           N + G    E  R  F+++V++VL +L G  +   +      +  D+D    WI   L+R
Sbjct: 54  NPEEGKQTREGTRQSFIDFVDRVL-ALHGD-SPIRKFSLKCKTGVDLDLLNQWICNVLQR 111

Query: 121 -------------RVRRLELDFSRVVYNLRFVGQYTFPSHLDFYSSFRHLTDLSLTTVGI 167
                        R   +E+  SR +  L+           +  S+   L  L+L +V  
Sbjct: 112 GVLLIDLSMDLGHRCMFIEIFMSRTLVELKLGSGCRIAFGPEHISALPMLKTLTLDSVSW 171

Query: 168 TGEVLEHLLCYCCPVLEVLNVAE-SSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQLHAPN 226
           +       L   CP LE LN+A    S  +  VS  SLK   +K                
Sbjct: 172 SDSGQLERLLSACPALEALNLANVHGSYPNATVSIASLKTLTIK---------------- 215

Query: 227 LLSFEYSGPILPFSFRNVPNLVDASFWGCF 256
             S   SGP   FSF + PNL+  ++   F
Sbjct: 216 --SVSLSGPAHVFSF-DTPNLLCLNYTALF 242

Arabidopsis thaliana (taxid: 3702)

>sp|Q0WR05|FBL39_ARATH F-box/LRR-repeat protein At2g42730 OS=Arabidopsis thaliana GN=At2g42730 PE=2 SV=1

 Score = 67.4 bits (163), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 72/257 (28%), Positives = 121/257 (47%), Gaps = 41/257 (15%)

Query: 6   DHINELPDDILVNILSRLTMKEAVRTSIISSRWRYLWRGFSGCLNFDDPFTMANSKWPHL 65
           D I+ LPD++L  ILS ++ KEAV TS++S RW+ ++   S  L+ DD  ++  +K    
Sbjct: 5   DVISRLPDEVLGRILSLISTKEAVSTSVLSKRWKNMFVLVSN-LDIDDRQSVPKTKQNR- 62

Query: 66  NLKSGPINVERHK-FVNWVNQVLSSLEGHCTEELRICFDV-----FSNHDIDNWIKFALE 119
                   +E H+ ++ +V+++L +  G   ++L +   V       +  I +WI   L+
Sbjct: 63  --------IEIHRNYMAFVDKLLDTQRGSSIKKLTLKSHVGVRGGTDSSRIQSWICNVLD 114

Query: 120 RRVRRLELDF-----------------SRVVYNLRFVGQYTFPSHLDFYSSFRHLTDLSL 162
             V  ++LD                  S+ +  LR    +T     D   S   L  L L
Sbjct: 115 HGV--MDLDVFITLKGKSPPVPAMIFKSKTLVKLRVGRGFTIKLSQDV--SLPLLRTLCL 170

Query: 163 TTVG-ITGEVLEHLLCYCCPVLEVLNVAESSSLT-SLKVSGPSLKLKHLKLNKLDNLKDL 220
            +V  + G  +   L   CPVLE L V E   +  +  VS PSLK  H++ ++      +
Sbjct: 171 DSVNFVGGHNVVGTLISRCPVLEELVVEERRCVDWTCSVSSPSLKRLHIRFDR--KFTSI 228

Query: 221 QLHAPNLLSFEYSGPIL 237
            L APNL+ +++SG +L
Sbjct: 229 SLDAPNLIYYKHSGYVL 245

Arabidopsis thaliana (taxid: 3702)

>sp|Q84W80|FBL42_ARATH F-box/LRR-repeat protein At3g03360 OS=Arabidopsis thaliana GN=At3g03360 PE=2 SV=2

 Score = 66.6 bits (161), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 102/234 (43%), Gaps = 57/234 (24%)

Query: 1   MRSEGDHINELPDDILVNILSRLTMKEAVRTSIISSRWRYLWRGFSGCLNFDDPFTMANS 60
           ++  GD I+ LPDDIL  ILS L  + A++TS++S RWR++W   +  L+F         
Sbjct: 32  LKEAGDLISRLPDDILQLILSYLPTRLAIKTSVLSRRWRHVWSD-TWSLSF--------- 81

Query: 61  KWPHLNLKSGPINVERHKFVNWVNQVLSSLEGHCTEELRICFDVF--------SNHDIDN 112
              H +    P           +N++L           RIC            ++ DID+
Sbjct: 82  ---HRDRPDAPC----------INRILDRYRAPKMMSFRICSCCRAACISRPDTHADIDS 128

Query: 113 WIKFALERRVRRLEL-------DFSRVVYNLRFVGQ--YTFPSHLDFYS-------SFRH 156
           WI FA+ R V  L L       D    +Y    + Q    F    DF S       S+  
Sbjct: 129 WINFAMSRNVENLSLYLDEDKYDIPEFLYINSSLKQLYLDFGCKKDFISLNPKCSVSWTS 188

Query: 157 LTDLSLTTVGITGE----------VLEHLLCYCCPVLEVLNVAESSSLTSLKVS 200
           L +LSL    I+ E          +LE LL + C  L+VL++++S  L +L+++
Sbjct: 189 LKNLSLYHCNISDESIAIILSGCPILESLLLFFCKKLKVLDLSKSPRLITLEIT 242

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FM89|FDL38_ARATH F-box/FBD/LRR-repeat protein At5g56420 OS=Arabidopsis thaliana GN=At5g56420 PE=2 SV=1

 Score = 64.3 bits (155), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 107/440 (24%), Positives = 177/440 (40%), Gaps = 79/440 (17%)

Query: 1   MRSEGDHINELPDDILVNILSRLTMKEAVRTSIISSRWRYLWRGFSGCLNFDDPFTMANS 60
           M S  D +++LPDD L+ ILS L  K+ + TS++S RWR+LW      LN+D    + ++
Sbjct: 1   MVSYRDRLSQLPDDFLLQILSWLPTKDVLVTSLLSKRWRFLW-TLVPRLNYD--LRLHDN 57

Query: 61  KWPHLNLKSGPINVERHKFVNWVNQVL-----SSLEGHCTEELRICFDVFSNHDIDNWIK 115
             P              +F  +V++ L      +LE    +   ICF   +  D+  W++
Sbjct: 58  TCP--------------RFSQFVDRSLLLHKAPTLESLNIKIGSICFT--AEKDVGVWVR 101

Query: 116 FALERRVRRLELDFSRVVYNLRFVGQYTFPSHLDFYSSFRHLTDLSLTTVGITGEVLEHL 175
             ++R VR L + +      +R       P  L         T  +L  + +    LE  
Sbjct: 102 IGVDRFVRELSVSYCSGEEPIR------LPKCL--------FTCSTLAVLKLENITLEDA 147

Query: 176 LCYCC----PVLEVLNVA--ESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQLHAPNLLS 229
            CY C      L +L+V   +  SL  +  S  SL+   ++    DN+K + + AP+L +
Sbjct: 148 SCYVCFQSLKTLHLLDVKYLDDQSLPRIISSCSSLEDLVVQRCPGDNVKVVTVTAPSLKT 207

Query: 230 FEYSGPILPFSFRNVPNLVDA---------SFWGCFSAYIAK--NLCQHSIFLVQLHTLK 278
                    F   +   L+D           +WG F  YI     + + ++ ++  +T K
Sbjct: 208 LSLHKSSQAFEGDDDGFLIDTPKLKRVDIEDYWGGF-CYIENMPEVVEANVDVIYKNTEK 266

Query: 279 ----------LDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIG-TPKVNDLIFCIALL 327
                     L  C L+  D+ Y AG           L HLE+    P+  DL+    L+
Sbjct: 267 LLGSITSVKRLALC-LITSDAAYPAGTIFS------QLVHLELCTCAPRWWDLL--TRLI 317

Query: 328 EAAPSLYKFSLKLVSQYDYESYESVKTIKDQPYLSFTELRSIRVVELLGFVGHTADFELV 387
           E +P L    L+   Q       S +    QP L    L  +   +   + G     E+ 
Sbjct: 318 EDSPKLRVLKLR---QKHIRRAPSPRASWKQPALPKCLLFHLETFKWELYEGSQKQKEVA 374

Query: 388 MYLIFSAKLLEKIIIDPCPT 407
            +++  A  L+  II P PT
Sbjct: 375 TFILKHAIRLKTAIISPKPT 394

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LJ48|FB191_ARATH Putative F-box protein At3g29830 OS=Arabidopsis thaliana GN=At3g29830 PE=4 SV=1

 Score = 63.2 bits (152), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 75/265 (28%), Positives = 130/265 (49%), Gaps = 34/265 (12%)

Query: 3   SEGDHINELPDDILVNILSRLTMKEAVRTSIISSRWRYLWRGFSGCLNFDDPFTMANSKW 62
           ++ D I+ LPD +LV ILS L+ K+ V+TSI+S RWR +    +  ++F +   +  S +
Sbjct: 5   NQRDRISSLPDVVLVMILSFLSFKDNVKTSILSKRWRNICYE-AKNISFKESEYVDISVF 63

Query: 63  PHLNLKSGPINVERHKFVNWVNQVLSSLEGHCTEELRIC--FDVFSNHDIDNWIKFALER 120
            +++        +R  FV ++   +S +     E   IC  F V    +I + I+F++ R
Sbjct: 64  DYVS--------KRVSFVRYMLNWVSRVPIKVIESFEICLGFPVGFEVEIKSLIEFSISR 115

Query: 121 RVRRLELDFSRVVY--------NLRFV--------GQYTFPSHLDFYSSF--RHLTDLSL 162
           +V++L LDFS   +        N  FV        G  T  S   +   F     T++ L
Sbjct: 116 QVKKLVLDFSSPFWDNTWDGLRNDDFVIELPALIYGLQTLESLTIYACMFDPSRFTNVGL 175

Query: 163 TTVGITGEVLEHL--LCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKL-NKLDNLKD 219
            T+ I    LE +  L    P+LE L++  S  L  +K++G  ++++ L + N +     
Sbjct: 176 RTLSIGWFRLEKIESLLSKFPLLESLSII-SCYLDEVKLAG-QIRVRELIIDNCIIPTMY 233

Query: 220 LQLHAPNLLSFEYSGPILPFSFRNV 244
             L+ PN+  F+YSG ++ F F+ V
Sbjct: 234 CLLNLPNIEIFKYSGNVIVFDFQKV 258

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	446
255544812	464	ubiquitin-protein ligase, putative [Rici	0.939	0.903	0.441	3e-95
357477131	447	F-box family-6 [Medicago truncatula] gi|	0.914	0.912	0.337	7e-56
449440973	475	PREDICTED: putative FBD-associated F-box	0.919	0.863	0.361	2e-51
356544606	444	PREDICTED: putative F-box protein At3g58	0.883	0.887	0.324	1e-46
255540581	457	ubiquitin-protein ligase, putative [Rici	0.917	0.894	0.303	3e-39
302142991	402	unnamed protein product [Vitis vinifera]	0.748	0.830	0.339	7e-37
357162424	482	PREDICTED: putative FBD-associated F-box	0.860	0.796	0.278	3e-27
297736820	487	unnamed protein product [Vitis vinifera]	0.899	0.823	0.288	6e-26
147865783	1789	hypothetical protein VITISV_020815 [Viti	0.908	0.226	0.287	4e-25
357119372	497	PREDICTED: uncharacterized protein LOC10	0.910	0.816	0.260	2e-23

>gi|255544812|ref|XP_002513467.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223547375|gb|EEF48870.1| ubiquitin-protein ligase, putative [Ricinus communis]

 Score =  355 bits (911), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 194/439 (44%), Positives = 289/439 (65%), Gaps = 20/439 (4%)

Query: 6   DHINELPDDILVNILSRLTMKEAVRTSIISSRWRYLWRGFSGCLNFDDPFTMANSKWPHL 65
           +HI++LP+D+L+NILSRLTMKEA RTSI+S+RWR+LW  ++G ++FD   TM    +  L
Sbjct: 33  EHISQLPEDVLLNILSRLTMKEAARTSILSTRWRHLWTYYTGIMDFDASLTMW---YLQL 89

Query: 66  NLKSGPINVERHKFVNWVNQVLSSLEGHCTEELRICFDVFSN--HDIDNWIKFALERRVR 123
            L S  +++ERH FV+WVNQVL S EG   E LRICFD+ S+  ++ID+WI  A+++RV+
Sbjct: 90  GLGSKSLDMERHSFVSWVNQVLRSHEGPTMEGLRICFDLDSDFMYEIDSWITIAMQKRVK 149

Query: 124 RLELDFSRVVYNLRFVGQYTFPSHLDFYSSFRHLTDLSLTTVGITGEVLEHLLCYCCPVL 183
           RLE+D + +  +++  G Y FPS L   SSF  L  L L  V +TGE L+HLL   CP+L
Sbjct: 150 RLEIDLTNIEPSIKTTGSYAFPSGLLNDSSFSSLKTLQLNMVDVTGEALQHLLLSWCPLL 209

Query: 184 EVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQLHAPNLLSFEYSGPILPFSFRN 243
           EVL++  S+SL SLKVSG SLKLK+L++   +NLK L++ A +L+SF+Y GP++   F++
Sbjct: 210 EVLSIVNSTSLVSLKVSGSSLKLKYLEMVCCNNLKYLEITAASLVSFKYYGPLIGLPFKS 269

Query: 244 VPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEM 303
           VPNLVDASF G F     +NL Q S++++QL TL+ D        S Y    +  + P +
Sbjct: 270 VPNLVDASFGGPFCQLTIENLYQFSLYILQLETLRFDV------GSAYLMREFPTNFPIL 323

Query: 304 CNLKHLEI-IGTPKVNDLIF-CIALLEAAPSLYKFSLKLVS-QYDYESYESVKTIKDQPY 360
            N+KHLE+      V   +F C++LL+  P L++F+LK++S +       S K  +D  +
Sbjct: 324 SNVKHLEVTTAVSAVAHCLFPCLSLLKGCPLLHRFTLKVISCESTLVCRASQKVPEDHSH 383

Query: 361 LSFTELRSIRVVELLGFVGHTADFELVMYLIFSAKLLEKIIIDPCPTWRVGTPAELIWRE 420
                   ++VVE+LGF G+ A+ ELV+Y + +A +L+ +II PC    + +P++L ++E
Sbjct: 384 ------PCLKVVEVLGFQGNAAEVELVLYFLRNAAVLKNLIISPCAPCYLRSPSQLKFKE 437

Query: 421 TAEYQSARRRAFELAAKFP 439
           T  YQSA++ A EL A+ P
Sbjct: 438 TELYQSAKQHAVELGARVP 456

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357477131|ref|XP_003608851.1| F-box family-6 [Medicago truncatula] gi|355509906|gb|AES91048.1| F-box family-6 [Medicago truncatula]

 Score =  224 bits (571), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 150/445 (33%), Positives = 242/445 (54%), Gaps = 37/445 (8%)

Query: 4   EGDHINELPDDILVNILSRLTMKEAVRTSIISSRWRYLWRGFSGCLNFDDPFTMANSKWP 63
           E D IN+LPD I +NIL+ L +KEA RTSI+S +W+ LW  FSG L F+    M +    
Sbjct: 23  EEDIINQLPDGIPINILANLPIKEAARTSILSRKWKNLWTYFSGTLEFEGSPIMKDMIKD 82

Query: 64  HLNLKSGPI--------NVERHKFVNWVNQVLSSLEGHCTEELRICFDVFSNHDIDNWIK 115
              +  G +        + ER  + +W+N++LSSL+    + L+  F + +  DIDNWI 
Sbjct: 83  LKKVTGGRLQMAMEIMYDAERQTYTSWINELLSSLQCSTLQGLKFWFPMKNVSDIDNWIH 142

Query: 116 FALERRVRRLELDFSRVVYNLRFVGQYTFPSHLDFYSSFRHLTDLSLTTVGITGEVLEHL 175
           FA++++V++LEL F   +        Y  P H+     F  L  L + ++ +T E+LE+L
Sbjct: 143 FAVQKKVQKLELYFGHTIV-------YVLPLHIFKVERFNSLCVLRMKSITVTDEMLEYL 195

Query: 176 LCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQLHAPNLLSFEYSGP 235
           +C C  +LE L++ +S    ++KVSG SLKLK L+L +   L  +++ A  L+SF+Y G 
Sbjct: 196 MCNC-QLLETLSLVDSRVPKTMKVSGSSLKLKCLELVRCWELTKIEIFAEKLVSFKYYGS 254

Query: 236 ILPFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGR 295
            L   F++VP L +ASF G F  ++ ++      FL Q+  LKLD     I  +      
Sbjct: 255 HLETEFKSVPCLEEASFGGSFVEFVRES------FLPQIKVLKLD-----ITQNSPEVIY 303

Query: 296 YLHDIPEMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTI 355
           +L  +P++ NLKHLE++     + +  C+ LL+A+PSL++  +K+++     +Y +    
Sbjct: 304 WLSQLPKLKNLKHLELVACAD-DGISACVMLLKASPSLWRLKIKMLNTKP--TYITEHKF 360

Query: 356 KDQPYLSFTELRSIRVVELLGFVGHTADFELVMYLIFSAKLLEKIIIDP-CPTWRVGTPA 414
             + + +  EL      EL+GF G   + ELVMY++ +   L+KI ID   PT     P 
Sbjct: 361 TMECHYNLKEL------ELVGFCGAACEVELVMYILENTDELQKITIDTRLPTKPKLRPL 414

Query: 415 ELIWRETAEYQSARRRAFELAAKFP 439
           +    ET + +  +R A+ L  K P
Sbjct: 415 DEEHFETWDLEEKKRCAWRLKDKIP 439

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440973|ref|XP_004138258.1| PREDICTED: putative FBD-associated F-box protein At5g56700-like [Cucumis sativus] gi|449501454|ref|XP_004161371.1| PREDICTED: putative FBD-associated F-box protein At5g56700-like [Cucumis sativus]

 Score =  209 bits (533), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 161/445 (36%), Positives = 233/445 (52%), Gaps = 35/445 (7%)

Query: 6   DHINELPDDILVNILSRLTMKEAVRTSIISSRWRYLWRGFSGCLNFDDPFTMANSKWPHL 65
           D I+ LP DILV ILS L +KEA RTS +S +WR LW  F  CLNFD    + + ++   
Sbjct: 45  DSISHLPQDILVFILSLLPLKEAARTSTLSHKWRCLW-SFIPCLNFDAHKKLLDLQFTDE 103

Query: 66  NLKSGPINVERHKFVNWVNQVLSSLEGHCTEELRICFDVFSNH--DIDNWIKFALERRVR 123
           NLKS     ER +FV WVN+V+ S +G   E LRI F++ S+   D+D W++FA++ +++
Sbjct: 104 NLKS-----ERRQFVKWVNRVIDSYKGSNLETLRIRFNLDSSFQCDVDRWVQFAMQWKLK 158

Query: 124 RLELDFSRVVYNLRFVGQYTFPSHLD---------FYSSFRHLTDLSLTTVGITGEVLEH 174
             EL+ S   Y+       +FP   D          +S+   L  L L  V + GE LE 
Sbjct: 159 MFELNLSDS-YDSGIYSPCSFPQLSDGPKENFPRFMFSNSSSLKTLKLIAVNVGGEALEC 217

Query: 175 LLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQLHAPNLLSFEYSG 234
            L    P+LE+L V  S  L SL+V G SLKL+ L++   + L+ L++ APNL SF+Y G
Sbjct: 218 FLTNS-PLLEILVVEYSHCLLSLRVVGASLKLRQLEVCMCNYLESLEVSAPNLESFKYVG 276

Query: 235 PILPFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAG 294
           P L    +N P L++  F   F   I  +    S +  QL  L LD       + ++   
Sbjct: 277 PWLSMPLKNTPKLLETYFGSEFGVEIIDHFFLLSSYSSQLQKLILDL------EVDFMEN 330

Query: 295 RYLHDIPEMCNLKHLEIIGTPKV-NDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVK 353
           +     P + NLK L++I   +  + LI   +L++A+PSL KF+LKL    D      ++
Sbjct: 331 QGFRKWPILANLKELKLIVIAEGHSSLIGFTSLIKASPSLLKFTLKL-DYLDMFEQRPLR 389

Query: 354 TIKDQPYLSFTELRSIRVVELLGFVGHTADFELVMYLIFSAKLLEKIIIDPCPTWRVGTP 413
            +K  P+      + I+VVEL GFVG   D ELV Y   +A  LE+II D      +GT 
Sbjct: 390 KVKKFPH------QYIKVVELAGFVGKPIDLELVQYFHKNAVALEEIIFDTRKPKDMGTI 443

Query: 414 AELIWRETAEYQSARRRAFELAAKF 438
            E   ++ AE  + R  A  L +K 
Sbjct: 444 FEK--KQNAETIAGRECANGLRSKL 466

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544606|ref|XP_003540740.1| PREDICTED: putative F-box protein At3g58860-like [Glycine max]

 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 143/441 (32%), Positives = 227/441 (51%), Gaps = 47/441 (10%)

Query: 6   DHINELPDDILVNILSRLTMKEAVRTSIISSRWRYLWRGFSGCLNFDDPFTMANSKWPHL 65
           D I+ +PDDIL +ILSRLT+KEA RTS+++++WRY W  FSG L+FD      + +  H+
Sbjct: 11  DIISTMPDDILGDILSRLTLKEAARTSVLATKWRYHWTFFSGLLDFDHSLRNFHLRREHV 70

Query: 66  NL--KSGPINVERHKFVNWVNQVLSSLEGHCTEELRICFDVFSNHDIDNWIKFALERRVR 123
            +  K      E  +F+  +  V+ SL+    + LRIC D+     +  W+K+A E+ V+
Sbjct: 71  GILTKCNVFVYEWERFMTRMANVMKSLKSSSLQGLRICMDLGDPWRVAEWVKYAAEKHVQ 130

Query: 124 RLELDFS------------RVVYNLRFVGQYTFPSHLDFYSSFRHLTDLSLTTVGITGEV 171
            L+LDFS             +V+N+       FPS        + L +L L++V ++GEV
Sbjct: 131 TLDLDFSYHFSVPFYEISLTIVHNV-------FPSR---GYEMKSLCNLRLSSVDVSGEV 180

Query: 172 LEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQLHAPNLLSFE 231
           +E LL   CP+LE + V ES  L  LKV G +L+LKHL+L +   + DL ++A NL++F 
Sbjct: 181 IEGLLA-SCPLLESICVIESKRLVRLKVRGEALRLKHLELVEC-RIMDLDIYAVNLVTFR 238

Query: 232 YSGPILPFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIF--LVQLHTLKLDTCHLLIGDS 289
           Y G    F F+NVP+LV+ASF G F +Y+  ++ +   +  L+Q++ LKL+      G  
Sbjct: 239 YQGKYGKFKFQNVPSLVEASFGGIFCSYLESDMDRVDFYGVLLQINVLKLELSKPYPG-- 296

Query: 290 EYRAGRYLHDIPEMCNLKHLEI-IGTPKVNDLIFCIALLEAAPSLYKFSLKLVSQYDYES 348
                 +L  +P   N+  LEI I       L   ++LL + PS+    +K         
Sbjct: 297 ------FLEGLPVFDNVGQLEIRIPHRSGAALDHHVSLLSSFPSVRVLKIKFQRNDLSVV 350

Query: 349 YESVKTIKDQPYLSFTELRSIRVVELLGFVGHTADFELVMYLIFSAKLLEKIIIDPCPTW 408
            E+ K   +  Y +  EL      E+ GF    +  EL++ +   A  L  +++DP  + 
Sbjct: 351 EENWKANLEHEYPNLREL------EVSGFRRDPSQMELLISIFEKAPNLNSVVVDPLSSI 404

Query: 409 RVGTPAELIWRETAEYQSARR 429
            V    ++     A Y+  RR
Sbjct: 405 HVDRSPDV----KARYREMRR 421

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540581|ref|XP_002511355.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223550470|gb|EEF51957.1| ubiquitin-protein ligase, putative [Ricinus communis]

 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 144/475 (30%), Positives = 233/475 (49%), Gaps = 66/475 (13%)

Query: 3   SEGDHINELPDDILVNILSRLTMKEAVRTSIISSRWRYLWRGFSGCLNFD-DPFTMANSK 61
           ++ D I+ LP++IL +ILS LT +EA RTS++S RWR LW   +  LNFD     +    
Sbjct: 16  AKEDRISHLPEEILTSILSFLTTEEASRTSVLSRRWRILW-TLTSSLNFDCTKIALGKKL 74

Query: 62  WPHLNLKSGPINVERHKFVNWVNQVLSSLEGHCTEELRICFDVFSN--HDIDNWIKFALE 119
                L+S     ER +F  WV +VL   +    +E  + FD+  N    +D W+ FA+ 
Sbjct: 75  DDRFALRS-----ERTRFAMWVKRVLEVYKDSNLDEFIVSFDLTCNSRRSLDKWMNFAMS 129

Query: 120 RRVRRLELDFSRV-VYNLRFVGQ-YTFPSHLDFYSSFR---------HLTDLSLTTVGIT 168
           + ++RLE+  +       RF  + Y+FP  +D YS  R          L  L L  V +T
Sbjct: 130 KTLKRLEISLAPFSSRKFRFHDECYSFP--VDCYSFIRGPEGLSNISSLRSLCLRYVNMT 187

Query: 169 GEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQLHAPNLL 228
           GEV+EH L   CP+LE L VA +  L SLKV   SL+LK+L++    +LK+ ++ APNL+
Sbjct: 188 GEVVEHFLLN-CPLLEQLTVAVAYRLESLKVPASSLRLKYLEIFDCYHLKNFEICAPNLV 246

Query: 229 SF------EYSGPILPFS----------FRNVPNL-VDASFWGCFSAYIAKNLCQHSIFL 271
           +        Y+G  +                 P L +   F+G  S+  +          
Sbjct: 247 TILYNQGGRYNGRRMKLQAVHLPHLLDLHLGGPELSITEDFFGACSSSFS---------- 296

Query: 272 VQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTPKVNDLIFCIALLEAAP 331
            QL TLK+    + + + + R        PE+ NL+HL       +  ++    L++++P
Sbjct: 297 -QLMTLKIVVTEVRMQECQVRLK--FPKFPELTNLRHLGFKTEYDICSILAVRLLIKSSP 353

Query: 332 SLYKFSLKLVSQYDYESYESVKTIKDQPYLSFTELRSIRVVELLGFVGHTADFELVMYLI 391
            L KF+L+L      +    V+T  + P+      ++++VVE++GF+G   ++E +M+ +
Sbjct: 354 LLNKFTLELADGSRCQIKRRVRTGINCPH------QNLKVVEIVGFIGGAVEYEFIMFFL 407

Query: 392 FSAKLLEKIIIDPCPTWRVGTPAELIWRETAEYQSARRRAFELAAKF-PLWEFVI 445
            +A  LEKII+ P   +   +P+E    E    + AR  A +   +F P  E VI
Sbjct: 408 DNASALEKIILRPRDPF---SPSEA---ENKMLRRAREHAEKFKTRFSPRVEVVI 456

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142991|emb|CBI20286.3| unnamed protein product [Vitis vinifera]

 Score =  161 bits (407), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 130/383 (33%), Positives = 199/383 (51%), Gaps = 49/383 (12%)

Query: 6   DHINELPDDILVNILSRLTMKEAVRTSIISSRWRYLWRGFSGCLNFDDPFTMANSKWPHL 65
           D ++ELPD+IL++ILSRLT++EA  TS++S RWRYLW  ++  LNFD        +    
Sbjct: 22  DLLSELPDEILISILSRLTLREAAATSVLSQRWRYLW-TYTSRLNFDSVVNKIVRRSHSF 80

Query: 66  NLKSGP-INVERHKFVNWVNQVLSSLE-GHCTEELRICFDVF--SNHDIDNWIKFALERR 121
            L +       R K++ WV++VL+    G   +E R+CFD+   S  DID W +FA+ + 
Sbjct: 81  ALSTAAGRRRRRRKYIKWVHKVLAKYRGGRNLDEFRVCFDLSKRSRSDIDKWFEFAMSKN 140

Query: 122 VRRLELDFSRV-----------VYNLRFVGQYTFPSHL----------DFYSSFRHLTDL 160
           V+ LE DF R            V    F   Y FP  +            +  F+ L  L
Sbjct: 141 VKNLEFDFLRCSSQNQDRDPWFVMLSYFQNFYKFPHRILGVREARDPNGMFVGFKSLKTL 200

Query: 161 SLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDL 220
           SL ++ ++ E +E+ L   CP+LE L+V  S SL +L+V+GPS+ L+HL++ K  +++ +
Sbjct: 201 SLKSINVSSEAVEYFLSN-CPLLERLSVHGSESLVNLRVAGPSIMLRHLEIVKCSSIQTI 259

Query: 221 QLHAPNLLSFEY----SGPILP--FSFRNVPNLVDASFWGCFSAYIAKN-LCQHSIFLVQ 273
           ++   NL+SF Y     G +LP      N P LV+    G      AKN L + S  + Q
Sbjct: 260 EICDTNLVSFTYRGERKGDLLPNNMHIENSPLLVEV-LAGVGRLGFAKNMLLKLSSCVHQ 318

Query: 274 LHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEI---IGTPKVNDLIFCIALLEAA 330
           L  L+L   H        R+  YL  +P++ NLK L++   +G P+ N L+  +A+L+  
Sbjct: 319 LQILQLTVDHFF----PERSRAYL--LPKLRNLKQLKLTVFVGCPE-NCLLGFVAMLKKC 371

Query: 331 PSLYKFSLKLVSQYDYESYESVK 353
           P L      LV Q D    +S+K
Sbjct: 372 PHLE----SLVLQVDVLLSDSIK 390

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357162424|ref|XP_003579406.1| PREDICTED: putative FBD-associated F-box protein At1g61330-like [Brachypodium distachyon]

 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 122/438 (27%), Positives = 202/438 (46%), Gaps = 54/438 (12%)

Query: 11  LPDDILVNILSRLTMKEAVRTSIISSRWRYLWRGFSGCLNFDDPFTMANSKWPHLNLKSG 70
           LP DIL ++LS+L +KEA+RTS++S++W+++WRG  GC   D       +K       S 
Sbjct: 33  LPTDILFSVLSKLPLKEALRTSVLSTQWKHVWRG--GCTKLDFTRKTILTKNERTTFTSR 90

Query: 71  PINVERHKFVNWVNQVLSSLEGHCTEELRICFDVFSNHD--IDNWIKFALERRVRRLELD 128
             +  R  F+  VN ++    G   E+ R+   + + H   +D W+ +A+E + + L LD
Sbjct: 91  SRDDNRKMFIKRVNSIIRQHSGIGIEQFRVIQPLHNEHADYVDTWVNYAIESKAKELVLD 150

Query: 129 FSRVVYNLRFVGQYTFPSH--------------LDF--------YSSFRHLTDLSLTTVG 166
                +    V  Y F SH              L+F        ++ F +LT L+L +V 
Sbjct: 151 MDWEAHGPEIV-PYDFFSHSTNTNSYMHLNSLELNFVSLRLPADFTGFPNLTKLNLESVN 209

Query: 167 ITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQLHAPN 226
           IT E  EHLL + C +L  L +A    LTSL+    + KLKHL +     L++++L+   
Sbjct: 210 ITNEDTEHLL-FICTLLVSLRIAHCKMLTSLRTRHLN-KLKHLVVLTCPLLQEIELNC-G 266

Query: 227 LLSFEYSGPILPFSFRNVPNLVDASFWGCFSAYIAKNLCQHSI--FLVQLHTLKLDTCHL 284
           +   +Y GPI+P +      L +       + + A +     I   L  L  L L   H+
Sbjct: 267 ITQLDYRGPIIPLALARSLRLTNICI-KLSTKHSAIDFIFSEIPNTLHDLEVLTLRCTHI 325

Query: 285 LIGDSEYRAGRYLHDIPEMCNLKH--LEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLVS 342
                  R  ++        +L+H  LE I   K  D++    LLEAAP L KF L +V 
Sbjct: 326 QRAVVPTRIFKF-------DSLRHLRLETIICRKKLDVLDLACLLEAAPFLEKFELHMVM 378

Query: 343 QYDYESY----ESVKTIKDQPYLSFTELRSIRVVELLGFVGHTADFELVMYLIFSAKLLE 398
             D+  Y      ++ +   P+        + +V + GF G     EL +Y++ +A +L+
Sbjct: 379 NRDHRRYCLEDGELRRLPSYPHC------HLNMVHITGFYGQKDQLELALYVLNNATMLK 432

Query: 399 KIIIDPCPTWRVGTPAEL 416
           ++ ++   T  V  P +L
Sbjct: 433 EMKVEISST--VHEPGKL 448

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297736820|emb|CBI26021.3| unnamed protein product [Vitis vinifera]

 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 137/475 (28%), Positives = 211/475 (44%), Gaps = 74/475 (15%)

Query: 6   DHINELPDDILVNILSRLTMKEAVRTSIISSRWRYLWRGFS-------GCLNFDDPFTMA 58
           D + ELPDDIL  I+S L +KEAVRT I+S RWR +W   S         L   D  T  
Sbjct: 16  DWLVELPDDILSTIISLLPLKEAVRTGILSKRWRSIWTCHSELWFDAASVLGIGDCSTSM 75

Query: 59  NSKWPHLNLKSGPINVERHKFVNWVNQVL-SSLEGHCTEELRICFDV---FSNHDIDNWI 114
           +   P LN +     ++  KFV  V+Q +    +G       I F +   F +H ID WI
Sbjct: 76  SGNQPELNSQ-----MQSSKFVERVDQFMYYRSQGRKINSFSIHFPLGKEFMSH-IDQWI 129

Query: 115 KFALERRVRRLELDFSRVV-YNLR-------FVGQYTFP--------------------S 146
             A+ + V  ++LD S    +NL+           Y FP                     
Sbjct: 130 TCAVMKGVENIDLDLSEYFSFNLKRDDTSSTAFQIYEFPCRLFSVPGGRCTLKHLRLASC 189

Query: 147 HLDFYSSFRHLTDL---SLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPS 203
           HL    S   LT L    L  V I+ + L+ LL  C   LE L++   + L +L  S  +
Sbjct: 190 HLSALPSSNTLTSLITVDLQRVNISDQQLQDLLSTCSH-LEWLSLCVCNGLVNLSFSALN 248

Query: 204 LKLKHLKLNKLDNLKDLQLHAPNLLSFEYSGPILPFSFRNVPNLVDASF----WGCFSAY 259
           L+LK L +     L+ +++HA +L++F+Y G +  FSF+NVP L  AS         +  
Sbjct: 249 LQLKFLSIKNCFRLETIEIHAADLVTFKYGGHLPSFSFKNVPKLAKASLEFFIKSSRTEG 308

Query: 260 IAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTP--KV 317
           +   L +    L QL TLKL +   L      +  +   + P   N+K  E+   P    
Sbjct: 309 VMYALTRFPQDLPQLETLKLLSVLTL------KKLQLPENGPTFTNVKQFELTVFPFDDD 362

Query: 318 NDLIFCIALLEAAPSLYKFSLKLVS-QYDYESYESVKTIKDQPYLSFTELRSIRVVELLG 376
           +DL +   +L+A P L K  L L S  +  +  E  + + + P+      R + ++++ G
Sbjct: 363 DDLSWIGYILKAFPLLQKLELNLFSPSFTKQPKEIERFLPECPH------RHLSILQING 416

Query: 377 FVGHTADFELVMYLIFSAKLLEKIIIDPCPTWRVGTPAELI-WRETAEYQSARRR 430
           F G+  + +L+ YL+ +   LE +++ P          E I WR  AE+   R R
Sbjct: 417 FYGNQHEVDLLKYLLHNLVALELLVVAPSK-----KGGEYISWRSQAEHLWCRAR 466

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147865783|emb|CAN81149.1| hypothetical protein VITISV_020815 [Vitis vinifera]

 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 138/480 (28%), Positives = 213/480 (44%), Gaps = 75/480 (15%)

Query: 1    MRSEGDHINELPDDILVNILSRLTMKEAVRTSIISSRWRYLWRGFS-------GCLNFDD 53
            +R E D + ELPDDIL  I+S L +KEAVRT I+S RWR +W   S         L   D
Sbjct: 1314 VRGE-DWLVELPDDILSTIISLLPLKEAVRTGILSKRWRSIWTCHSELWFDAASVLGIGD 1372

Query: 54   PFTMANSKWPHLNLKSGPINVERHKFVNWVNQVL-SSLEGHCTEELRICFDV---FSNHD 109
                 +   P LN +     ++  KFV  V+Q +    +G       I F +   F +H 
Sbjct: 1373 CSXSMSGNQPELNSQ-----MQSXKFVERVDQFMYYRSQGPKINSFSIHFPLGKEFMSH- 1426

Query: 110  IDNWIKFALERRVRRLELDFSRVV-YNLR-------FVGQYTFP---------------- 145
            ID WI  A+ + V  ++LD S    +NL+           Y FP                
Sbjct: 1427 IDQWITCAVMKGVENIDLDLSEYFSFNLKRDDTSSTAFQIYEFPCRLFSVPGGRCTLKHL 1486

Query: 146  ----SHLDFYSSFRHLTDL---SLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLK 198
                 HL    S   LT L    L  V I+ + L+ LL  C   LE L++   + L +L 
Sbjct: 1487 RLASCHLSALPSSNTLTSLITVDLQRVNISDQQLQDLLSTCSH-LERLSLCVCNGLVNLS 1545

Query: 199  VSGPSLKLKHLKLNKLDNLKDLQLHAPNLLSFEYSGPILPFSFRNVPNLVDASF----WG 254
             S  +L+LK L +     L+ +++HA +L++F+Y G +  FSF+NVP L  AS       
Sbjct: 1546 FSALNLQLKFLSIKNCFRLETIEIHAADLVTFKYGGHLPSFSFKNVPKLAKASLEFFIKS 1605

Query: 255  CFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGT 314
              +  +   L +    L QL TLKL +   L      +  +   + P   N+K  E+   
Sbjct: 1606 SRTEGVMYALTRFPQDLPQLETLKLLSVLTL------KKLQLPENGPTFTNIKQFELTVF 1659

Query: 315  P--KVNDLIFCIALLEAAPSLYKFSLKLVS-QYDYESYESVKTIKDQPYLSFTELRSIRV 371
            P    +DL +   +L+A P L K  L L S  +  +  E  + + + P+      R + +
Sbjct: 1660 PFDDDDDLSWIGYILKAFPLLQKLELNLFSPSFTKQPKEIERFLPECPH------RHLSI 1713

Query: 372  VELLGFVGHTADFELVMYLIFSAKLLEKIIIDPCPTWRVGTPAELI-WRETAEYQSARRR 430
            +++ GF G+  + +L+ YL+ +   LE +++ P          E I WR  AE+   R R
Sbjct: 1714 LQINGFYGNQHEVDLLKYLLHNLVALELLVVAPSKKG-----GEYISWRSQAEHLWCRAR 1768

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357119372|ref|XP_003561416.1| PREDICTED: uncharacterized protein LOC100838353 [Brachypodium distachyon]

 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 123/473 (26%), Positives = 206/473 (43%), Gaps = 67/473 (14%)

Query: 7   HINELPDDILVNILSRLTMKEAVRTSIISSRWRYLWRGFSGCLNFDDPFTMANSKWPHLN 66
            +++LP D+L ++LS+L M+EAV+TSI+S +W+Y+W      LNF+    M    W    
Sbjct: 25  QLSDLPMDVLCSVLSQLPMEEAVKTSILSCQWKYIW-CHQTSLNFNCKTIMPRVAW---- 79

Query: 67  LKSGPINVERHKFVNWVNQVLSSLEGHCTEELRICFDVFSNH--DIDNWIKFALERRVRR 124
                    R +F+  VN VL    G   E++ I FD+   H  D+D W+  A+  + + 
Sbjct: 80  ---STREAVRQEFIKRVNAVLRQRNGAGVEKMNIRFDLDDRHAADVDRWVNLAIASKTKV 136

Query: 125 LE----LDFSRVVYNLRF-----VGQYTFP---------SHLDF-------------YSS 153
           L     LD   +VY LR      +  Y FP         SHL               +  
Sbjct: 137 LTLELWLDSPAIVYRLRVSDPERMEPYNFPFQLFDECNGSHLRSLHLSTVSLKLPTNFKG 196

Query: 154 FRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNK 213
           F +L  L L+ V IT E L H +   C VLE L V   + L +L +   + +LKHL++  
Sbjct: 197 FLNLKKLYLSGVSITDEDLGHFVSK-CSVLEFLGVLFCTMLETLTIPHSANQLKHLQIRC 255

Query: 214 LDNLKDLQLHAPNLLSFEYSGPILPFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQ 273
              L  ++L+  +L    Y GP+  F      +L DA    C +    +   +H    + 
Sbjct: 256 CPLLHKVRLNY-SLKMLVYKGPVTYFVSDRTSSLTDA----CINLLDVRTSLKHLFAELS 310

Query: 274 LHTLKLDTCHLLIGDSEYRAGRYLHDIPEMC--NLKHLE-----IIGTPKVNDLIFCIAL 326
             T    +C   +        R +      C   L+H++     ++ +    D++    L
Sbjct: 311 GST----SCPKSVATKCRDLERSIPPRSSTCFLGLRHVKLEVTILVSSESGTDVLDLGHL 366

Query: 327 LEAAPSLYKFSLKLVSQYDYESYESVKTIKDQPYLSFTELRSIRVVELLGFVGHTADFEL 386
           L+AAPS+ K  L +  +  ++ Y   +   D   L       +++V + GF GH    EL
Sbjct: 367 LKAAPSMEKLELHMWMRRKHKPY--CRDDGDLRILPAHPHSHLKLVHITGFYGHKDQLEL 424

Query: 387 VMYLIFSAKLLEKIIIDPCPTWRVGTPAELIWRETAEYQSARR-RAFELAAKF 438
             +++ +  +LE++ +DP    RV    E +     EY+ +R      +A++F
Sbjct: 425 ADHILRNCVVLEEMKVDP----RVAI--EKLSTSEDEYEESRNLDGLRVASEF 471

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	446
TAIR|locus:2010032	416	AT1G13570 "AT1G13570" [Arabido	0.423	0.454	0.293	1.2e-11
TAIR|locus:2157922	444	AT5G53840 "AT5G53840" [Arabido	0.408	0.409	0.279	8.8e-11
TAIR|locus:2010708	479	AT1G56400 "AT1G56400" [Arabido	0.260	0.242	0.322	8.5e-10
TAIR|locus:2162454	437	AT5G22700 "AT5G22700" [Arabido	0.401	0.409	0.288	1.9e-09
TAIR|locus:2175861	388	AT5G60610 "AT5G60610" [Arabido	0.820	0.943	0.257	4e-09
TAIR|locus:2099054	454	AT3G58880 "AT3G58880" [Arabido	0.517	0.508	0.301	4.3e-09
TAIR|locus:2129266	434	AT4G13960 "AT4G13960" [Arabido	0.255	0.262	0.362	4.3e-09
TAIR|locus:2151316	456	AT5G02700 "AT5G02700" [Arabido	0.082	0.081	0.540	2.1e-08
TAIR|locus:2116362	453	AT4G27050 "AT4G27050" [Arabido	0.302	0.298	0.344	2.5e-08
TAIR|locus:2099644	481	AT3G03360 [Arabidopsis thalian	0.405	0.376	0.3	3.8e-08

TAIR|locus:2010032 AT1G13570 "AT1G13570" [Arabidopsis thaliana (taxid:3702)]

 Score = 173 (66.0 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
 Identities = 63/215 (29%), Positives = 102/215 (47%)

Query:     1 MRSEGDHINELPDDILVNILSRLTMKEAVRTSIISSRWRYLWRGFSGCLNFDDPFTMANS 60
             M    D I++LP  I+ NIL+RL++++A+RTS++SS+WRY W   +  L FD+       
Sbjct:     1 MGESPDFISDLPQSIIENILTRLSIRDAIRTSVLSSKWRYKWSTLTD-LVFDEKCVS--- 56

Query:    61 KWPHLNLKSGPINVERHKFVNWVNQVLSSLEGHCTE-ELRICFDVFSNHDIDNWIKFALE 119
               P     S    V     V ++  VL   +G   + +L   F      DID W+ F   
Sbjct:    57 --P-----SNDRCVVETNLVRFITGVLLLHQGPIHKFQLSTSFKQ-CRPDIDQWLLFLSR 108

Query:   120 RRVRRLELDFS----RV---VYN-LRFVGQYTFPSHLD---FYSSFRHLTDLSLTTVGIT 168
               ++ L L       RV   ++N L+           D   ++  F +L  L+L  + + 
Sbjct:   109 NGIKELVLKLGEGEFRVPACLFNCLKLTCLELCHCEFDPPQYFKGFSYLKSLNLHQILVA 168

Query:   169 GEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPS 203
              EV+E L+  C P+LE L+++   SL  L +S P+
Sbjct:   169 PEVIESLISGC-PLLEFLSLSYFDSLV-LSISAPN 201

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2157922 AT5G53840 "AT5G53840" [Arabidopsis thaliana (taxid:3702)]

 Score = 140 (54.3 bits), Expect = 8.8e-11, Sum P(2) = 8.8e-11
 Identities = 54/193 (27%), Positives = 92/193 (47%)

Query:     3 SEGDHINELPDDILVNILSRLTMKEAVRTSIISSRWRYLWRGFSGCLNFDDPFTMANSKW 62
             SE + +++LPD ++  ILS L+ K+AVRTSI+S+RWR LW+     L+FD     + S++
Sbjct:    15 SEEERLSQLPDHLICVILSHLSTKDAVRTSILSTRWRNLWQ-LVPVLDFDSRELRSFSEF 73

Query:    63 PHLNLKSGPINVERHKFVNWVNQVLSSLEGHCTEELRICFDVFSNH---DIDNWIKFALE 119
               ++       + +  ++  +   +  L G+    L    D+ + H    ID  +     
Sbjct:    74 --VSFAGSFFYLHKDSYIQKLRVCIYDLAGNYY--LTSWIDLVTRHRIQHIDISVFTCSG 129

Query:   120 RRVRRLELDFSRVVYNLRFVGQYTFPSHLDFYSSFRHLTDLSLTTVGITGEVLEHLLCYC 179
               V  L L     + +L+ + + T  + ++F S    L  L L  V  T E     +  C
Sbjct:   130 FGVIPLSLYTCDTLVHLK-LSRVTMVN-VEFVS-LPCLKILDLDFVNFTNETTLDKIISC 186

Query:   180 CPVLEVLNVAESS 192
              PVLE L + +SS
Sbjct:   187 SPVLEELTIVKSS 199

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

TAIR|locus:2010708 AT1G56400 "AT1G56400" [Arabidopsis thaliana (taxid:3702)]

 Score = 146 (56.5 bits), Expect = 8.5e-10, Sum P(2) = 8.5e-10
 Identities = 41/127 (32%), Positives = 71/127 (55%)

Query:     6 DHINELPDDILVNILSRLTMKEAVRTSIISSRWRYLWRGFSGCLNFDDPFTMANSKWPHL 65
             D ++ LPD +L+ I+S L+ KE +RTS+++ RWRYL R     ++F +   + +     +
Sbjct:    13 DRLSNLPDVLLIMIISCLSFKECIRTSVLAKRWRYLCRETRN-ISFKETEYVDH----FV 67

Query:    66 NLKSGPINVERHKFVNWVNQVLSSLEGHCTEELRICFDVFSNH--DIDNWIKFALERRVR 123
             + K      +R  F  ++ Q +S   G   E L I F + S+    +++ I+FA+ R+V+
Sbjct:    68 SDKRS----KRVSFAAYMCQWVSRYHGRYIETLEIYFSIPSDFLAAVESLIEFAVSRQVK 123

Query:   124 RLELDFS 130
              L LDFS
Sbjct:   124 NLVLDFS 130

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2162454 AT5G22700 "AT5G22700" [Arabidopsis thaliana (taxid:3702)]

 Score = 148 (57.2 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
 Identities = 62/215 (28%), Positives = 102/215 (47%)

Query:     1 MRSEGDHINELPDDILVNILSRLTMKEAVRTSIISSRWRYLWRGFSGCLNFD-DPFTMAN 59
             M + GD I+ LPD++L  ILS L  K AV TSI+S+RWR +W   +  L+ D D F  A 
Sbjct:     1 MSNRGDRISSLPDELLCQILSNLPTKNAVTTSILSTRWRSIWLS-TPVLDIDIDAFDDAT 59

Query:    60 SKWPHLNLKSGPINVERHKFVNWVNQVLSSLEGHCTEELRICFDVFSNHDIDNWIKFALE 119
             +    ++  S  +   +    + +++   S+E    +++ +C        I  WI+ A+ 
Sbjct:    60 T---FVSFASRFLEFSKD---SCLHKFKLSVE---RDDVDMC-------TIMPWIQDAVN 103

Query:   120 RRVRRLELD--FS---RVVYNLRFVGQYTFPSHLDFYSSFRHLTDLSLTTVGITGEVLEH 174
             RR++ LE+D  FS     VY   ++ +      L F +  R+   +SL  + +    LE 
Sbjct:   104 RRIQHLEVDCRFSFHFEAVYLTLYLSETLVSLRLHFVTLHRY-EFVSLPNLKVMH--LEE 160

Query:   175 LLCYC----------CPVLEVLNVAESSSLTSLKV 199
              + YC          CPVLE L V     + + K+
Sbjct:   161 NIYYCLETLENFISSCPVLEDLTVVRIVDIITEKI 195

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2175861 AT5G60610 "AT5G60610" [Arabidopsis thaliana (taxid:3702)]

 Score = 163 (62.4 bits), Expect = 4.0e-09, P = 4.0e-09
 Identities = 105/408 (25%), Positives = 172/408 (42%)

Query:     6 DHINELPDDILVNILSRLTMKEAVRTSIISSRWRYLWRGFSGCLNFD--DP----FTMAN 59
             D I+ LPD++LV I+S +  K AV TSI+S RW  LW+     L  D  +P    F + N
Sbjct:     2 DRISGLPDELLVKIISFVPTKVAVSTSILSKRWESLWKWVPK-LECDCTEPALRDFILKN 60

Query:    60 SKWPHLNLKSGPINVERHKFVNWVNQVLSSLE-GHCTEELRICFDVFSNHDIDNWIKFAL 118
                    ++S  +   R  F+    ++   +   HC  ELRI  D FS H  + ++   L
Sbjct:    61 LPLQARIIESLYLRFRRESFLFQDIKLWGGIAISHCLRELRI--DFFS-HYANPYV--IL 115

Query:   119 ERRVRRLELDFSRVVYNLRFVG-QYTFPSHLDFYSSFRHLTDLSLTTVGITGEVLEHLLC 177
              R +   +   S V   L  +G +   P  +   S    L  L L  V  + E    LL 
Sbjct:   116 PRSLYTCK---SLVTLKLLGLGIRVDVPRDVCLPS----LKTLLLQCVAYSEEDPLRLLL 168

Query:   178 YCCPVLE--VLNVAESS-SLTSLKVSGPSXXXXXXXXXXXXXXXXXXXXAPNLLSF--EY 232
              CCPVLE  V+ + +++ ++ +L V  P+                     P+L  F  E 
Sbjct:   169 SCCPVLEDLVIELDDANQNVKALVVIVPTLQCLSLKIPASCSDERYLIVTPSLKYFKVED 228

Query:   233 SGPILPFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYR 292
                I      N+P L +A  +   + +I   L   S+  V+  TL+    +  I + + R
Sbjct:   229 DREIFNALIENMPELEEADIY--VTQHIETLL--ESVTSVKRLTLR--QLYNSIDEYKCR 282

Query:   293 AGRYLHDIPEMCNLKHLEI-IGTPKVNDLIFCIALLEAAPSLYKFSLKLVSQYD-YESYE 350
             AG           L+ LE+ I +     L+  I LL+ +P+L   +L   S Y+ YE YE
Sbjct:   283 AGIVFKQ------LEQLELSICSDNWTKLV--IWLLQNSPNLRVLNLDADSDYERYEEYE 334

Query:   351 SVKTIKDQPYLSFTELRSIRVVELLGFVGHTADFELVMYLIFSAKLLE 398
                    Q  +      S++ +E  G+     + + + ++   A+ L+
Sbjct:   335 QDNWKNIQRSVPKCLKSSLKTLEFAGYTARPEERDFLSFIFKKARCLK 382

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2099054 AT3G58880 "AT3G58880" [Arabidopsis thaliana (taxid:3702)]

 Score = 164 (62.8 bits), Expect = 4.3e-09, P = 4.3e-09
 Identities = 81/269 (30%), Positives = 113/269 (42%)

Query:     6 DHINELPDDILVNILSRLTMKEAVRTSIISSRWRYLWRGFSGCLNFDDPFTMANSKWPHL 65
             D ++ LPDD+L +ILS LT KEA  TSI+S RWRYL   F   L FDD           L
Sbjct:     3 DLVSSLPDDLLGHILSLLTTKEAALTSILSKRWRYLI-AFVPYLEFDDS--------AFL 53

Query:    66 NLKSGPINVE--RHKFVNWVNQVLSSLEGHCTEELRICFDVFSNHDID---NWIKFALER 120
             N + G    E  R  F+++V++VL+ L G      +      +  D+D    WI   L+R
Sbjct:    54 NPEEGKQTREGTRQSFIDFVDRVLA-LHGDSPIR-KFSLKCKTGVDLDLLNQWICNVLQR 111

Query:   121 RVRRLELDF-------------SRVVYNLRFVG--QYTF-PSHLDFYSSFRHLTDLSLTT 164
              V  ++L               SR +  L+     +  F P H+      + LT L   +
Sbjct:   112 GVLLIDLSMDLGHRCMFIEIFMSRTLVELKLGSGCRIAFGPEHISALPMLKTLT-LDSVS 170

Query:   165 VGITGEVLEHLLCYCCPVLEVLNVAE-SSSLTSLKVSGPSXXXXXXXXXXXXX-XXXXXX 222
                +G+ LE LL   CP LE LN+A    S  +  VS  S                    
Sbjct:   171 WSDSGQ-LERLLS-ACPALEALNLANVHGSYPNATVSIASLKTLTIKSVSLSGPAHVFSF 228

Query:   223 XAPNLLSFEYSGPILP-FSFRNVPNLVDA 250
               PNLL   Y+      +   N+  LV+A
Sbjct:   229 DTPNLLCLNYTALFEDDYPLVNLEYLVEA 257

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2129266 AT4G13960 "AT4G13960" [Arabidopsis thaliana (taxid:3702)]

 Score = 163 (62.4 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
 Identities = 45/124 (36%), Positives = 71/124 (57%)

Query:     6 DHINELPDDILVNILSRLTMKEAVRTSIISSRWRYLWRGFSGCLNFDDPFTMANSKWPHL 65
             DH++ LPD++L +ILS LT KEA  TSI+S RWR L+  F   L+ DD   +   +    
Sbjct:     2 DHVSSLPDEVLYHILSFLTTKEAALTSILSKRWRNLFT-FVPNLDIDDSVFLHPQEG--- 57

Query:    66 NLKSGPINVERHKFVNWVNQVLSSLEGHCT-EELRICFDV-FSNHDIDNWIKFALERRVR 123
               K     +++  F+ +V++VL+ L+G+   ++L +     F +H +D WI  AL R V 
Sbjct:    58 --KEDRYEIQK-SFMKFVDRVLA-LQGNSPIKKLSLKLRTGFDSHRVDGWISNALARGVT 113

Query:   124 RLEL 127
              L+L
Sbjct:   114 ELDL 117

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2151316 AT5G02700 "AT5G02700" [Arabidopsis thaliana (taxid:3702)]

 Score = 107 (42.7 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
 Identities = 20/37 (54%), Positives = 28/37 (75%)

Query:     6 DHINELPDDILVNILSRLTMKEAVRTSIISSRWRYLW 42
             D IN +PDDIL +ILS +    A+RTS++S RWR++W
Sbjct:    27 DFINYMPDDILHHILSFIPTDLAMRTSVLSRRWRHVW 63

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2116362 AT4G27050 "AT4G27050" [Arabidopsis thaliana (taxid:3702)]

 Score = 134 (52.2 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
 Identities = 51/148 (34%), Positives = 72/148 (48%)

Query:     6 DHINELPDDILVNILSRLTMKEAVRTSIISSRWRYLWRGFSGCLNFDDP--FTMANSKWP 63
             D I+ LPDD+L  ILS +  K A  TS++S RWR L       L+FD+   F   N    
Sbjct:     4 DLISNLPDDVLGKILSLVPTKLAAATSVLSKRWRNLLP-LVDSLDFDETMLFYPDNKDGE 62

Query:    64 H--LNLKSGPINVERHKFVNWVNQVLSSLEGH-CTEELRI-CFDVFSNHDIDNWIKFALE 119
                 + +SG     RH F ++V++ L+ L     TE+  + C+       I+ WI+ ALE
Sbjct:    63 DEASSYESG--QRRRHSFSHFVDKTLALLSNAPLTEKFSLKCYHEDDGARINRWIRTALE 120

Query:   120 RRVRRLELDFSRVVYNLRFVGQYTFPSH 147
             R    LEL+     Y L    QY F S+
Sbjct:   121 RGC--LELNLEAANY-LPIDSQY-FTSN 144

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2099644 AT3G03360 [Arabidopsis thaliana (taxid:3702)]

 Score = 156 (60.0 bits), Expect = 3.8e-08, P = 3.8e-08
 Identities = 69/230 (30%), Positives = 106/230 (46%)

Query:     1 MRSEGDHINELPDDILVNILSRLTMKEAVRTSIISSRWRYLWRGFSGCLNFDDPFTMANS 60
             ++  GD I+ LPDDIL  ILS L  + A++TS++S RWR++W   +  L+F         
Sbjct:    32 LKEAGDLISRLPDDILQLILSYLPTRLAIKTSVLSRRWRHVWSD-TWSLSF--------- 81

Query:    61 KWPHLNLKSGP-IN--VERHKFVNWVNQVLSSLEGHCTEELRICFDVFSNH-DIDNWIKF 116
                H +    P IN  ++R++    ++  + S    C      C      H DID+WI F
Sbjct:    82 ---HRDRPDAPCINRILDRYRAPKMMSFRICS----CCRAA--CISRPDTHADIDSWINF 132

Query:   117 ALERRVRRLEL-------DFSRVVY-NLRFVGQYT-FPSHLDFYS-------SFRHLTDL 160
             A+ R V  L L       D    +Y N      Y  F    DF S       S+  L +L
Sbjct:   133 AMSRNVENLSLYLDEDKYDIPEFLYINSSLKQLYLDFGCKKDFISLNPKCSVSWTSLKNL 192

Query:   161 SLTTVGITGE----------VLEHLLCYCCPVLEVLNVAESSSLTSLKVS 200
             SL    I+ E          +LE LL + C  L+VL++++S  L +L+++
Sbjct:   193 SLYHCNISDESIAIILSGCPILESLLLFFCKKLKVLDLSKSPRLITLEIT 242

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: BRADI5G24490.1 annotation not avaliable (482 aa) (Brachypodium distachyon)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	446
pfam00646	48	pfam00646, F-box, F-box domain	5e-05
smart00256	41	smart00256, FBOX, A Receptor for Ubiquitination Ta	3e-04
pfam12937	47	pfam12937, F-box-like, F-box-like	8e-04

>gnl|CDD|201368 pfam00646, F-box, F-box domain

 Score = 40.3 bits (95), Expect = 5e-05
 Identities = 18/38 (47%), Positives = 26/38 (68%)

Query: 6  DHINELPDDILVNILSRLTMKEAVRTSIISSRWRYLWR 43
            + +LPDD+L+ ILSRL  K+ +R S++S RWR L  
Sbjct: 1  FSLLDLPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVD 38

This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48

>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets

 Score = 37.8 bits (89), Expect = 3e-04
 Identities = 15/33 (45%), Positives = 21/33 (63%)

Query: 11 LPDDILVNILSRLTMKEAVRTSIISSRWRYLWR 43
          LPD+IL  ILS+L  K+ +R   +S +WR L  
Sbjct: 1  LPDEILEEILSKLDPKDLLRLRKVSRKWRSLID 33

Length = 41

>gnl|CDD|221867 pfam12937, F-box-like, F-box-like

 Score = 36.7 bits (86), Expect = 8e-04
 Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 6/42 (14%)

Query: 8  INELPDDILVNILSRLTMKEAVRTSIISSRWR------YLWR 43
          +++LPD+IL+ I S L  ++ +R +++  RWR       LWR
Sbjct: 1  LSDLPDEILLQIFSYLDPRDLLRLALVCRRWRELASDDSLWR 42

This is an F-box-like family. Length = 47

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	446
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.59
KOG4341	483	consensus F-box protein containing LRR [General fu	99.51
PF08387	51	FBD: FBD; InterPro: IPR013596 This region is found	99.06
smart00579	72	FBD domain in FBox and BRCT domain containing plan	98.81
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.7
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.44
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.39
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.35
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.3
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.28
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.24
KOG4341	483	consensus F-box protein containing LRR [General fu	98.22
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.13
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.07
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.05
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	97.97
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.84
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.56
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	97.34
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	97.33
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.31
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.29
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.24
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.03
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.82
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.8
PF07723	26	LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Le	96.72
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	96.61
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	96.57
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.55
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	96.49
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	96.45
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	96.39
PRK15386	426	type III secretion protein GogB; Provisional	95.12
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	94.78
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	94.64
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	94.53
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	94.42
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	94.0
PRK15386	426	type III secretion protein GogB; Provisional	93.63
KOG2982	418	consensus Uncharacterized conserved protein [Funct	92.82
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	92.49
KOG3864	221	consensus Uncharacterized conserved protein [Funct	92.36
KOG2997	366	consensus F-box protein FBX9 [General function pre	92.35
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	92.23
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	92.21
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	91.85
KOG0617	264	consensus Ras suppressor protein (contains leucine	91.07
KOG2123	388	consensus Uncharacterized conserved protein [Funct	90.56
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	90.18
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	89.74
KOG3864	221	consensus Uncharacterized conserved protein [Funct	88.69
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	87.56
KOG2123	388	consensus Uncharacterized conserved protein [Funct	87.5
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	86.62
KOG4237	498	consensus Extracellular matrix protein slit, conta	86.24
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	86.05
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	85.96
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	85.91
KOG0617	264	consensus Ras suppressor protein (contains leucine	85.61
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	83.46
PF13013	109	F-box-like_2: F-box-like domain	81.6
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	81.57
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	81.55
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	81.3
KOG0472	565	consensus Leucine-rich repeat protein [Function un	80.36

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.59  E-value=2.2e-16  Score=141.25  Aligned_cols=275  Identities=21%  Similarity=0.245  Sum_probs=175.6

Q ss_pred             CCCCChHHHHHHHhCCChhHHHHHhhccchhhhh------cccccceEEecCCCCCCCCCCccccCCCCCchhhHhHHHH
Q 013265            8 INELPDDILVNILSRLTMKEAVRTSIISSRWRYL------WRGFSGCLNFDDPFTMANSKWPHLNLKSGPINVERHKFVN   81 (446)
Q Consensus         8 is~LPd~iL~~ILs~Lp~kd~~rts~lSkrWr~l------w~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (446)
                      +..|||||+..||+.|+.||..+.+.|||||.++      |.    .+++....+.+                  ....+
T Consensus        98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~----~lDl~~r~i~p------------------~~l~~  155 (419)
T KOG2120|consen   98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQ----TLDLTGRNIHP------------------DVLGR  155 (419)
T ss_pred             cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcccccccee----eeccCCCccCh------------------hHHHH
Confidence            6789999999999999999999999999999865      65    56665554432                  22222


Q ss_pred             HHHHHHHhccCCCcceEEEEEecCCcchHHHHHHH--HHHcCCcEEEEeeeccccccccccccccccccCC-cccccccc
Q 013265           82 WVNQVLSSLEGHCTEELRICFDVFSNHDIDNWIKF--ALERRVRRLELDFSRVVYNLRFVGQYTFPSHLDF-YSSFRHLT  158 (446)
Q Consensus        82 ~v~~~L~~~~~~~l~~l~l~~~~~~~~~~~~wi~~--~~~~~l~~L~l~~~~~~~~~~~~~~~~lp~~~~~-~~~~~~L~  158 (446)
                      .+     + +|  |.-|++.-.....   .+....  .++..++.+++.....          ... .+.. ...|..||
T Consensus       156 l~-----~-rg--V~v~Rlar~~~~~---prlae~~~~frsRlq~lDLS~s~i----------t~s-tl~~iLs~C~kLk  213 (419)
T KOG2120|consen  156 LL-----S-RG--VIVFRLARSFMDQ---PRLAEHFSPFRSRLQHLDLSNSVI----------TVS-TLHGILSQCSKLK  213 (419)
T ss_pred             HH-----h-CC--eEEEEcchhhhcC---chhhhhhhhhhhhhHHhhcchhhe----------eHH-HHHHHHHHHHhhh
Confidence            22     1 23  4445443111111   112222  2333577777644321          000 0000 23578999


Q ss_pred             ceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCcee---EeCCcCccceEEeeccCCCCeEEE-----ECCceeEE
Q 013265          159 DLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLK---VSGPSLKLKHLKLNKLDNLKDLQL-----HAPNLLSF  230 (446)
Q Consensus       159 ~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~---i~~~~~~L~~L~i~~~~~l~~~~i-----~~p~L~~l  230 (446)
                      .|.|.+..++|. +..-++. -.+|++|+|..|.|++...   +..+|++|.+|.++.|......+.     ..++|+.|
T Consensus       214 ~lSlEg~~LdD~-I~~~iAk-N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~L  291 (419)
T KOG2120|consen  214 NLSLEGLRLDDP-IVNTIAK-NSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQL  291 (419)
T ss_pred             hccccccccCcH-HHHHHhc-cccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhh
Confidence            999999998876 3344667 7899999999999987653   334668999999999985544321     24889999


Q ss_pred             EEcccccc-------cccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCC
Q 013265          231 EYSGPILP-------FSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEM  303 (446)
Q Consensus       231 ~~~~~~~~-------~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~  303 (446)
                      ++.|+.-.       .-...+|+|.+++++++ .... .+....+..++.|++|.++.|+.....      . .-.+...
T Consensus       292 NlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~-v~l~-~~~~~~~~kf~~L~~lSlsRCY~i~p~------~-~~~l~s~  362 (419)
T KOG2120|consen  292 NLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDS-VMLK-NDCFQEFFKFNYLQHLSLSRCYDIIPE------T-LLELNSK  362 (419)
T ss_pred             hhhhhHhhhhhhHHHHHHHhCCceeeeccccc-cccC-chHHHHHHhcchheeeehhhhcCCChH------H-eeeeccC
Confidence            99888422       22346888888888776 2221 134466677888999998887543321      1 1124456


Q ss_pred             CcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEE
Q 013265          304 CNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKL  340 (446)
Q Consensus       304 ~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~  340 (446)
                      |.|++|++.++..+.   .+.-+.+.||+|+.-.-++
T Consensus       363 psl~yLdv~g~vsdt---~mel~~e~~~~lkin~q~~  396 (419)
T KOG2120|consen  363 PSLVYLDVFGCVSDT---TMELLKEMLSHLKINCQHF  396 (419)
T ss_pred             cceEEEEeccccCch---HHHHHHHhCccccccceee
Confidence            788899888886443   3455677888887665544

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.51  E-value=1e-15  Score=142.92  Aligned_cols=346  Identities=18%  Similarity=0.148  Sum_probs=204.1

Q ss_pred             cCC-CCChHHHHHHHhCCChhHHHHHhhccchhhhhcc--cccceEEecCCCCCCCCCCccccCCCCCchhhHhHHHHHH
Q 013265            7 HIN-ELPDDILVNILSRLTMKEAVRTSIISSRWRYLWR--GFSGCLNFDDPFTMANSKWPHLNLKSGPINVERHKFVNWV   83 (446)
Q Consensus         7 ~is-~LPd~iL~~ILs~Lp~kd~~rts~lSkrWr~lw~--~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   83 (446)
                      -++ .||.|++.+|||+|.++...|++++|+-|.-+-.  .....+++...  +.              +     ....|
T Consensus        70 ~~~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~--~r--------------D-----v~g~V  128 (483)
T KOG4341|consen   70 SISRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTF--QR--------------D-----VDGGV  128 (483)
T ss_pred             cccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcc--hh--------------c-----CCCcc
Confidence            344 5999999999999999999999999999986522  01113333222  11              0     01123


Q ss_pred             HHHHHhccCCCcceEEEEEecCCcchHHHHHHHHH-HcCCcEEEEeeeccccccccccccccccccC-C-ccccccccce
Q 013265           84 NQVLSSLEGHCTEELRICFDVFSNHDIDNWIKFAL-ERRVRRLELDFSRVVYNLRFVGQYTFPSHLD-F-YSSFRHLTDL  160 (446)
Q Consensus        84 ~~~L~~~~~~~l~~l~l~~~~~~~~~~~~wi~~~~-~~~l~~L~l~~~~~~~~~~~~~~~~lp~~~~-~-~~~~~~L~~L  160 (446)
                      -..+.+|.|..+++++++...+...  ...-.++. .+++++|.+...           +++....+ + ...+++|+.|
T Consensus       129 V~~~~~Rcgg~lk~LSlrG~r~v~~--sslrt~~~~CpnIehL~l~gc-----------~~iTd~s~~sla~~C~~l~~l  195 (483)
T KOG4341|consen  129 VENMISRCGGFLKELSLRGCRAVGD--SSLRTFASNCPNIEHLALYGC-----------KKITDSSLLSLARYCRKLRHL  195 (483)
T ss_pred             eehHhhhhccccccccccccccCCc--chhhHHhhhCCchhhhhhhcc-----------eeccHHHHHHHHHhcchhhhh
Confidence            3344455556688888876543222  11111222 236777754322           22221111 1 3467888888


Q ss_pred             EEEEEE-eChHHHHHHHhcCCCCcceeeEeccCCCCceeE---eCCcCccceEEeeccCCCC-----eEEEECCceeEEE
Q 013265          161 SLTTVG-ITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKV---SGPSLKLKHLKLNKLDNLK-----DLQLHAPNLLSFE  231 (446)
Q Consensus       161 ~L~~~~-~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i---~~~~~~L~~L~i~~~~~l~-----~~~i~~p~L~~l~  231 (446)
                      .|..|. +++..+..+..+ ||+|+.|.++.|..+..-.+   ...++.++.+...+|..++     .+.-.++.+..++
T Consensus       196 ~L~~c~~iT~~~Lk~la~g-C~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~ln  274 (483)
T KOG4341|consen  196 NLHSCSSITDVSLKYLAEG-CRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLN  274 (483)
T ss_pred             hhcccchhHHHHHHHHHHh-hhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccc
Confidence            888855 677777777778 88888888888876654222   2233556666666775422     1122233344444


Q ss_pred             Eccccc------ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCc
Q 013265          232 YSGPIL------PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCN  305 (446)
Q Consensus       232 ~~~~~~------~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (446)
                      +..+..      ...--.+..|+.+....+. +.....+..+.++.++|+.|.+..|-.      +....+-..-.+++.
T Consensus       275 l~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t-~~~d~~l~aLg~~~~~L~~l~l~~c~~------fsd~~ft~l~rn~~~  347 (483)
T KOG4341|consen  275 LQHCNQLTDEDLWLIACGCHALQVLCYSSCT-DITDEVLWALGQHCHNLQVLELSGCQQ------FSDRGFTMLGRNCPH  347 (483)
T ss_pred             hhhhccccchHHHHHhhhhhHhhhhcccCCC-CCchHHHHHHhcCCCceEEEeccccch------hhhhhhhhhhcCChh
Confidence            323310      0111134455555554441 222233447889999999999998632      222222223357889


Q ss_pred             ccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEEeccccccccccccccc--CCCCccccccCCCcEEEEEeeecCcch
Q 013265          306 LKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTIK--DQPYLSFTELRSIRVVELLGFVGHTAD  383 (446)
Q Consensus       306 L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~p--~c~~~~~~~l~~L~~v~i~~~~g~~~e  383 (446)
                      |+.|.+..++...+. .+.++-.+||.|++|.++-   +.-..+..+..+.  .|-.      .+|..+++.+..+... 
T Consensus       348 Le~l~~e~~~~~~d~-tL~sls~~C~~lr~lslsh---ce~itD~gi~~l~~~~c~~------~~l~~lEL~n~p~i~d-  416 (483)
T KOG4341|consen  348 LERLDLEECGLITDG-TLASLSRNCPRLRVLSLSH---CELITDEGIRHLSSSSCSL------EGLEVLELDNCPLITD-  416 (483)
T ss_pred             hhhhcccccceehhh-hHhhhccCCchhccCChhh---hhhhhhhhhhhhhhccccc------cccceeeecCCCCchH-
Confidence            999999999754443 6889999999999999963   2211122222222  3544      8899999998877644 


Q ss_pred             HHHHHHHHhcCccccceEEecCCC
Q 013265          384 FELVMYLIFSAKLLEKIIIDPCPT  407 (446)
Q Consensus       384 ~~~~~~ll~~a~~Le~l~i~~~~~  407 (446)
                       ...++ +.+++.||++.+.....
T Consensus       417 -~~Le~-l~~c~~Leri~l~~~q~  438 (483)
T KOG4341|consen  417 -ATLEH-LSICRNLERIELIDCQD  438 (483)
T ss_pred             -HHHHH-HhhCcccceeeeechhh
Confidence             33444 47888999988776544

>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members

Probab=99.06  E-value=1.4e-10  Score=78.27  Aligned_cols=46  Identities=24%  Similarity=0.502  Sum_probs=42.9

Q ss_pred             cccccCCCCccccccCCCcEEEEEeeecCcchHHHHHHHHhcCccccceEEe
Q 013265          352 VKTIKDQPYLSFTELRSIRVVELLGFVGHTADFELVMYLIFSAKLLEKIIID  403 (446)
Q Consensus       352 ~~~~p~c~~~~~~~l~~L~~v~i~~~~g~~~e~~~~~~ll~~a~~Le~l~i~  403 (446)
                      ....|+|..      +||+.|++.||.|.++|++|++|+++||++||+|+|.
T Consensus         5 ~~~~p~Cl~------s~Lk~v~~~~f~g~~~e~~f~~yil~na~~Lk~m~i~   50 (51)
T PF08387_consen    5 PSSVPECLL------SHLKFVEIKGFRGEENELEFAKYILENAPVLKKMTIS   50 (51)
T ss_pred             CCCCccchh------heeEEEEEEeeeCcHHHHHHHHHHHhhhhhhcEEEEE
Confidence            344689998      9999999999999999999999999999999999996

Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.

>smart00579 FBD domain in FBox and BRCT domain containing plant proteins

Probab=98.81  E-value=1.3e-09  Score=79.91  Aligned_cols=64  Identities=25%  Similarity=0.290  Sum_probs=50.8

Q ss_pred             CCCcEEEEEeeecCcchHHHHHHHHhcCccccceEEecCCCccccCcchhhhhhhHHHHHHHHHHH
Q 013265          367 RSIRVVELLGFVGHTADFELVMYLIFSAKLLEKIIIDPCPTWRVGTPAELIWRETAEYQSARRRAF  432 (446)
Q Consensus       367 ~~L~~v~i~~~~g~~~e~~~~~~ll~~a~~Le~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (446)
                      ++|++|+|.||.|..+|+++++||++||+.||+|+|...... .+... .+..++..+++||..++
T Consensus         5 ~~Lk~v~i~~f~g~~~e~~~~~~il~~a~~Lk~~~i~~~~~~-~~~~~-~i~~~L~~~~~aS~~c~   68 (72)
T smart00579        5 SSLEVLEIKGYRGTEEEKELVKYFLENAPCLKKLTISVETSD-DDEKL-EILKELLSLPRASSSCQ   68 (72)
T ss_pred             heEEEEEEEeccCcHHHHHHHHHHHhcchhheEEEEEeecCC-ccHHH-HHHHHHHhCcCCCCceE
Confidence            889999999999999999999999999999999999998764 22222 24555666666665544

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.70  E-value=1.4e-08  Score=67.57  Aligned_cols=36  Identities=39%  Similarity=0.755  Sum_probs=31.6

Q ss_pred             CCCCChHHHHHHHhCCChhHHHHHhhccchhhhhcc
Q 013265            8 INELPDDILVNILSRLTMKEAVRTSIISSRWRYLWR   43 (446)
Q Consensus         8 is~LPd~iL~~ILs~Lp~kd~~rts~lSkrWr~lw~   43 (446)
                      |+.||+||+.+||++|+.+|.++++.|||+|+++..
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~   36 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIAN   36 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHT
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHC
Confidence            678999999999999999999999999999998654

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.44  E-value=2.3e-07  Score=102.84  Aligned_cols=220  Identities=15%  Similarity=0.053  Sum_probs=114.4

Q ss_pred             ccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCce-eEeCCcCccceEEeeccCCCCeE---EEECCcee
Q 013265          153 SFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSL-KVSGPSLKLKHLKLNKLDNLKDL---QLHAPNLL  228 (446)
Q Consensus       153 ~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~-~i~~~~~~L~~L~i~~~~~l~~~---~i~~p~L~  228 (446)
                      .+++|+.|+|++..+++..-   ... .++|+.|++.++.....+ ..-..+++|+.|.++++.-...+   .-+.++|+
T Consensus       116 ~l~~L~~L~Ls~n~l~~~~p---~~~-l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~  191 (968)
T PLN00113        116 TSSSLRYLNLSNNNFTGSIP---RGS-IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLE  191 (968)
T ss_pred             cCCCCCEEECcCCccccccC---ccc-cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCC
Confidence            45667777776665543211   124 666777777666543221 11123356777777666411111   12346677


Q ss_pred             EEEEcccc----cccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCC
Q 013265          229 SFEYSGPI----LPFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMC  304 (446)
Q Consensus       229 ~l~~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~  304 (446)
                      +|++.++.    .+-.++++++|+.+++..+......+   ..+..+++|+.|++.++.+.        ...+..+..++
T Consensus       192 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p---~~l~~l~~L~~L~L~~n~l~--------~~~p~~l~~l~  260 (968)
T PLN00113        192 FLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIP---YEIGGLTSLNHLDLVYNNLT--------GPIPSSLGNLK  260 (968)
T ss_pred             eeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCC---hhHhcCCCCCEEECcCceec--------cccChhHhCCC
Confidence            77766553    23345566677777765543221111   34456677777777663221        12344455667


Q ss_pred             cccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEEecccccccccccccccCCCCccccccCCCcEEEEEeeecCcchH
Q 013265          305 NLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTIKDQPYLSFTELRSIRVVELLGFVGHTADF  384 (446)
Q Consensus       305 ~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~p~c~~~~~~~l~~L~~v~i~~~~g~~~e~  384 (446)
                      +|++|.+..+.-...   +..-+.+.++|+.|++..+   ...  +   ..|....    ++.+|+++.+.+..-.... 
T Consensus       261 ~L~~L~L~~n~l~~~---~p~~l~~l~~L~~L~Ls~n---~l~--~---~~p~~~~----~l~~L~~L~l~~n~~~~~~-  324 (968)
T PLN00113        261 NLQYLFLYQNKLSGP---IPPSIFSLQKLISLDLSDN---SLS--G---EIPELVI----QLQNLEILHLFSNNFTGKI-  324 (968)
T ss_pred             CCCEEECcCCeeecc---CchhHhhccCcCEEECcCC---eec--c---CCChhHc----CCCCCcEEECCCCccCCcC-
Confidence            777777766531111   1122355677777777432   100  0   1233221    3478888888764322111 


Q ss_pred             HHHHHHHhcCccccceEEecCC
Q 013265          385 ELVMYLIFSAKLLEKIIIDPCP  406 (446)
Q Consensus       385 ~~~~~ll~~a~~Le~l~i~~~~  406 (446)
                         ..-+.+.+.|+.+.+..+.
T Consensus       325 ---~~~~~~l~~L~~L~L~~n~  343 (968)
T PLN00113        325 ---PVALTSLPRLQVLQLWSNK  343 (968)
T ss_pred             ---ChhHhcCCCCCEEECcCCC
Confidence               1124677899999987654

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.39  E-value=6.4e-07  Score=85.98  Aligned_cols=61  Identities=20%  Similarity=0.107  Sum_probs=33.5

Q ss_pred             ccccccceEEEEEEeC--hH---HHHHHHhcCCCCcceeeEeccCCCCce-----eEeCCcCccceEEeeccC
Q 013265          153 SFRHLTDLSLTTVGIT--GE---VLEHLLCYCCPVLEVLNVAESSSLTSL-----KVSGPSLKLKHLKLNKLD  215 (446)
Q Consensus       153 ~~~~L~~L~L~~~~~~--~~---~l~~ll~~~cp~Le~L~L~~c~~~~~~-----~i~~~~~~L~~L~i~~~~  215 (446)
                      ..++|++|.+.+..+.  ..   .+...+.. +++|++|++.+|......     .+... ++|++|.+.+|.
T Consensus        49 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~  119 (319)
T cd00116          49 PQPSLKELCLSLNETGRIPRGLQSLLQGLTK-GCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNG  119 (319)
T ss_pred             hCCCceEEeccccccCCcchHHHHHHHHHHh-cCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCc
Confidence            4566777777776655  22   23344556 677777777776543211     11111 346666666654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.35  E-value=3.7e-07  Score=87.62  Aligned_cols=219  Identities=17%  Similarity=0.126  Sum_probs=96.0

Q ss_pred             ccccccceEEEEEEeChHHHHHHHhcCC---CCcceeeEeccCCCC-ce-eE---eCCc-CccceEEeeccCCCCeEEEE
Q 013265          153 SFRHLTDLSLTTVGITGEVLEHLLCYCC---PVLEVLNVAESSSLT-SL-KV---SGPS-LKLKHLKLNKLDNLKDLQLH  223 (446)
Q Consensus       153 ~~~~L~~L~L~~~~~~~~~l~~ll~~~c---p~Le~L~L~~c~~~~-~~-~i---~~~~-~~L~~L~i~~~~~l~~~~i~  223 (446)
                      .+++|+.|.|.++.+.+... ..+.. +   |+|++|++.+|.... .. .+   ...+ ++|++|.+.+|. +..-.. 
T Consensus        79 ~~~~L~~L~l~~~~~~~~~~-~~~~~-l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~-  154 (319)
T cd00116          79 KGCGLQELDLSDNALGPDGC-GVLES-LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR-LEGASC-  154 (319)
T ss_pred             hcCceeEEEccCCCCChhHH-HHHHH-HhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc-CCchHH-
Confidence            35677777777776653211 11222 2   447777777765321 00 00   0111 345555555443 110000 


Q ss_pred             CCceeEEEEcccccccccCCCCCcceEEecccchhh-hhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCC
Q 013265          224 APNLLSFEYSGPILPFSFRNVPNLVDASFWGCFSAY-IAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPE  302 (446)
Q Consensus       224 ~p~L~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~  302 (446)
                          .       .....+..++.|+.+++..+.+.. ....+...+...++|+.|.+.++.+.    ......+...+..
T Consensus       155 ----~-------~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~----~~~~~~l~~~~~~  219 (319)
T cd00116         155 ----E-------ALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLT----DEGASALAETLAS  219 (319)
T ss_pred             ----H-------HHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccC----hHHHHHHHHHhcc
Confidence                0       000112233445555554432221 11112223334456777776664331    1111122233455


Q ss_pred             CCcccEEEEEecCCCCCHHHHHHHHhh----CCCceEEEEEEecccccccccc--c-ccccCCCCccccccCCCcEEEEE
Q 013265          303 MCNLKHLEIIGTPKVNDLIFCIALLEA----APSLYKFSLKLVSQYDYESYES--V-KTIKDQPYLSFTELRSIRVVELL  375 (446)
Q Consensus       303 ~~~L~~L~L~~~~~~~~~~~l~~ll~~----~p~L~~L~l~~~~~~~~~~~~~--~-~~~p~c~~~~~~~l~~L~~v~i~  375 (446)
                      +++|++|++..+.-..  .++..+.+.    .+.|++|++..+   ...+.+.  + ...+.+        .+|+.+.+.
T Consensus       220 ~~~L~~L~ls~n~l~~--~~~~~l~~~~~~~~~~L~~L~l~~n---~i~~~~~~~l~~~~~~~--------~~L~~l~l~  286 (319)
T cd00116         220 LKSLEVLNLGDNNLTD--AGAAALASALLSPNISLLTLSLSCN---DITDDGAKDLAEVLAEK--------ESLLELDLR  286 (319)
T ss_pred             cCCCCEEecCCCcCch--HHHHHHHHHHhccCCCceEEEccCC---CCCcHHHHHHHHHHhcC--------CCccEEECC
Confidence            6667777776653111  133333333    356777776433   2221111  0 111221        456666665


Q ss_pred             ee-ecCcchHHHHHHHHhcCccccceEEe
Q 013265          376 GF-VGHTADFELVMYLIFSAKLLEKIIID  403 (446)
Q Consensus       376 ~~-~g~~~e~~~~~~ll~~a~~Le~l~i~  403 (446)
                      +- -+.+.+..+++-+..+++.|+.+.|.
T Consensus       287 ~N~l~~~~~~~~~~~~~~~~~~~~~~~~~  315 (319)
T cd00116         287 GNKFGEEGAQLLAESLLEPGNELESLWVK  315 (319)
T ss_pred             CCCCcHHHHHHHHHHHhhcCCchhhcccC
Confidence            42 23344556666666666666666654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PLN03210 Resistant to P

Probab=98.30  E-value=1e-06  Score=98.74  Aligned_cols=81  Identities=26%  Similarity=0.327  Sum_probs=46.2

Q ss_pred             cccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeE-eCCcCccceEEeeccCCCCeEE--EECCcee
Q 013265          152 SSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKV-SGPSLKLKHLKLNKLDNLKDLQ--LHAPNLL  228 (446)
Q Consensus       152 ~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i-~~~~~~L~~L~i~~~~~l~~~~--i~~p~L~  228 (446)
                      ..+++|+.|+|+++..... +.. ++. +++|+.|.+.+|..+..+.- -..+++|+.|.+.+|..++.+.  ++.++|+
T Consensus       631 ~~l~~Lk~L~Ls~~~~l~~-ip~-ls~-l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~  707 (1153)
T PLN03210        631 HSLTGLRNIDLRGSKNLKE-IPD-LSM-ATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLY  707 (1153)
T ss_pred             ccCCCCCEEECCCCCCcCc-CCc-ccc-CCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCC
Confidence            4577788888776532111 111 456 77777777777766544321 1233567777777776555442  2345666


Q ss_pred             EEEEccc
Q 013265          229 SFEYSGP  235 (446)
Q Consensus       229 ~l~~~~~  235 (446)
                      .|.++|+
T Consensus       708 ~L~Lsgc  714 (1153)
T PLN03210        708 RLNLSGC  714 (1153)
T ss_pred             EEeCCCC
Confidence            6666665

syringae 6; Provisional

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.28  E-value=2.8e-07  Score=61.57  Aligned_cols=37  Identities=46%  Similarity=0.764  Sum_probs=31.4

Q ss_pred             cCCCCChHHHHHHHhCCChhHHHHHhhccchhhhhcc
Q 013265            7 HINELPDDILVNILSRLTMKEAVRTSIISSRWRYLWR   43 (446)
Q Consensus         7 ~is~LPd~iL~~ILs~Lp~kd~~rts~lSkrWr~lw~   43 (446)
                      .|++||+|++.+|+++|+.+|.++.+.|||+|+.+..
T Consensus         2 ~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~   38 (48)
T PF00646_consen    2 PLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVD   38 (48)
T ss_dssp             HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHT
T ss_pred             CHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHc
Confidence            3678999999999999999999999999999998765

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.24  E-value=1.3e-06  Score=96.78  Aligned_cols=223  Identities=15%  Similarity=0.123  Sum_probs=145.9

Q ss_pred             cccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeEeCCcCccceEEeeccCCCCeE---EEECCcee
Q 013265          152 SSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDL---QLHAPNLL  228 (446)
Q Consensus       152 ~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~l~~~---~i~~p~L~  228 (446)
                      ..+++|+.|+|+++.+++.....++.. +++|++|++.++...+.+.. ...++|++|.++++.-...+   .-+.++|+
T Consensus        90 ~~l~~L~~L~Ls~n~~~~~ip~~~~~~-l~~L~~L~Ls~n~l~~~~p~-~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~  167 (968)
T PLN00113         90 FRLPYIQTINLSNNQLSGPIPDDIFTT-SSSLRYLNLSNNNFTGSIPR-GSIPNLETLDLSNNMLSGEIPNDIGSFSSLK  167 (968)
T ss_pred             hCCCCCCEEECCCCccCCcCChHHhcc-CCCCCEEECcCCccccccCc-cccCCCCEEECcCCcccccCChHHhcCCCCC
Confidence            468999999999988765434445668 99999999998865443322 23478999999988621111   12458999


Q ss_pred             EEEEcccc----cccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCC
Q 013265          229 SFEYSGPI----LPFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMC  304 (446)
Q Consensus       229 ~l~~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~  304 (446)
                      +|++.++.    .+..+.++++|+.+++..+......+   ..+..+++|+.|.+..+.+.        ...+..+..++
T Consensus       168 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p---~~l~~l~~L~~L~L~~n~l~--------~~~p~~l~~l~  236 (968)
T PLN00113        168 VLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIP---RELGQMKSLKWIYLGYNNLS--------GEIPYEIGGLT  236 (968)
T ss_pred             EEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCC---hHHcCcCCccEEECcCCccC--------CcCChhHhcCC
Confidence            99998774    24456788999999997764322222   55678899999999874321        23344567789


Q ss_pred             cccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEEecccccccccccccccCCCCccccccCCCcEEEEEeeecCcchH
Q 013265          305 NLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTIKDQPYLSFTELRSIRVVELLGFVGHTADF  384 (446)
Q Consensus       305 ~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~p~c~~~~~~~l~~L~~v~i~~~~g~~~e~  384 (446)
                      +|++|++..+.-...   +..-+.++++|+.|.+....   ..  +   ..|...    .++.+|+++.+.+..-...  
T Consensus       237 ~L~~L~L~~n~l~~~---~p~~l~~l~~L~~L~L~~n~---l~--~---~~p~~l----~~l~~L~~L~Ls~n~l~~~--  299 (968)
T PLN00113        237 SLNHLDLVYNNLTGP---IPSSLGNLKNLQYLFLYQNK---LS--G---PIPPSI----FSLQKLISLDLSDNSLSGE--  299 (968)
T ss_pred             CCCEEECcCceeccc---cChhHhCCCCCCEEECcCCe---ee--c---cCchhH----hhccCcCEEECcCCeeccC--
Confidence            999999988742221   23456788999999985431   11  1   123222    1347899998876432111  


Q ss_pred             HHHHHHHhcCccccceEEecCC
Q 013265          385 ELVMYLIFSAKLLEKIIIDPCP  406 (446)
Q Consensus       385 ~~~~~ll~~a~~Le~l~i~~~~  406 (446)
                        .--.+.+.+.|+.+.+....
T Consensus       300 --~p~~~~~l~~L~~L~l~~n~  319 (968)
T PLN00113        300 --IPELVIQLQNLEILHLFSNN  319 (968)
T ss_pred             --CChhHcCCCCCcEEECCCCc
Confidence              11124678899999887653

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.22  E-value=1.4e-07  Score=89.03  Aligned_cols=157  Identities=21%  Similarity=0.232  Sum_probs=84.4

Q ss_pred             ccccccccceEEEEEE-eChHHHHHHHhcCCCCcceeeEeccCCCCce---eEeCCcCccceEEeeccCCCCeEE-----
Q 013265          151 YSSFRHLTDLSLTTVG-ITGEVLEHLLCYCCPVLEVLNVAESSSLTSL---KVSGPSLKLKHLKLNKLDNLKDLQ-----  221 (446)
Q Consensus       151 ~~~~~~L~~L~L~~~~-~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~---~i~~~~~~L~~L~i~~~~~l~~~~-----  221 (446)
                      ..+|++|+.|+++++. +++.+++.+..+ |..|+++.+++|...+.-   .+.+.+.-+.++++..|..+.+..     
T Consensus       212 a~gC~kL~~lNlSwc~qi~~~gv~~~~rG-~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~  290 (483)
T KOG4341|consen  212 AEGCRKLKYLNLSWCPQISGNGVQALQRG-CKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIA  290 (483)
T ss_pred             HHhhhhHHHhhhccCchhhcCcchHHhcc-chhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHh
Confidence            4578888888888887 777778888888 888888888777765321   233333445555544554333322     


Q ss_pred             EECCceeEEEEccccc-c----c-ccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccc
Q 013265          222 LHAPNLLSFEYSGPIL-P----F-SFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGR  295 (446)
Q Consensus       222 i~~p~L~~l~~~~~~~-~----~-~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~  295 (446)
                      -.+..|+.+.+.++.. +    . -..++++|+-+.+..+. .+....+..+-.+++.|+.|.+..+.....      ..
T Consensus       291 ~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~-~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d------~t  363 (483)
T KOG4341|consen  291 CGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQ-QFSDRGFTMLGRNCPHLERLDLEECGLITD------GT  363 (483)
T ss_pred             hhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccc-hhhhhhhhhhhcCChhhhhhcccccceehh------hh
Confidence            1234455555554421 0    1 12245555555555441 233333335555666666666665433211      12


Q ss_pred             cccCCCCCCcccEEEEEecC
Q 013265          296 YLHDIPEMCNLKHLEIIGTP  315 (446)
Q Consensus       296 ~~~~~~~~~~L~~L~L~~~~  315 (446)
                      +....++++.|+.|+|+-|.
T Consensus       364 L~sls~~C~~lr~lslshce  383 (483)
T KOG4341|consen  364 LASLSRNCPRLRVLSLSHCE  383 (483)
T ss_pred             HhhhccCCchhccCChhhhh
Confidence            22333456666666666553

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.13  E-value=2.1e-06  Score=55.06  Aligned_cols=33  Identities=48%  Similarity=0.777  Sum_probs=31.4

Q ss_pred             CChHHHHHHHhCCChhHHHHHhhccchhhhhcc
Q 013265           11 LPDDILVNILSRLTMKEAVRTSIISSRWRYLWR   43 (446)
Q Consensus        11 LPd~iL~~ILs~Lp~kd~~rts~lSkrWr~lw~   43 (446)
                      ||+|++.+|+++|+.+|.++++.|||+|+.+..
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~   33 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLID   33 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence            799999999999999999999999999998765

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.07  E-value=2.4e-07  Score=83.96  Aligned_cols=159  Identities=18%  Similarity=0.233  Sum_probs=89.7

Q ss_pred             ccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCce--eEeCCcCccceEEeeccCCCCeEEEECCceeEEEE
Q 013265          155 RHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSL--KVSGPSLKLKHLKLNKLDNLKDLQLHAPNLLSFEY  232 (446)
Q Consensus       155 ~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~--~i~~~~~~L~~L~i~~~~~l~~~~i~~p~L~~l~~  232 (446)
                      ..|+.|+|+...++...+..+++. |..|+.|.|.+-.....+  .|... ..|+.|.++.|..+....+          
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~-C~kLk~lSlEg~~LdD~I~~~iAkN-~~L~~lnlsm~sG~t~n~~----------  252 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQ-CSKLKNLSLEGLRLDDPIVNTIAKN-SNLVRLNLSMCSGFTENAL----------  252 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHH-HHhhhhccccccccCcHHHHHHhcc-ccceeeccccccccchhHH----------
Confidence            369999999999999999999999 999999999987655544  34333 6899999988886544322          


Q ss_pred             cccccccccCCCCCcceEEecccchhhhhhhhhhhhccC-CCceEEEEeecccccccchhcccccccCCCCCCcccEEEE
Q 013265          233 SGPILPFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFL-VQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEI  311 (446)
Q Consensus       233 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l-~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L  311 (446)
                           ...+.++.+|.++++..|.. +.. .+..+..+. ++++.|.|.++--..+..     .+......+|+|.+|+|
T Consensus       253 -----~ll~~scs~L~~LNlsWc~l-~~~-~Vtv~V~hise~l~~LNlsG~rrnl~~s-----h~~tL~~rcp~l~~LDL  320 (419)
T KOG2120|consen  253 -----QLLLSSCSRLDELNLSWCFL-FTE-KVTVAVAHISETLTQLNLSGYRRNLQKS-----HLSTLVRRCPNLVHLDL  320 (419)
T ss_pred             -----HHHHHhhhhHhhcCchHhhc-cch-hhhHHHhhhchhhhhhhhhhhHhhhhhh-----HHHHHHHhCCceeeecc
Confidence                 12344555555555544311 100 011222222 245555555521111100     00111234556666666


Q ss_pred             EecCCCCCHHHHHHHHhhCCCceEEEEE
Q 013265          312 IGTPKVNDLIFCIALLEAAPSLYKFSLK  339 (446)
Q Consensus       312 ~~~~~~~~~~~l~~ll~~~p~L~~L~l~  339 (446)
                      +.+....+  ++...+..+|.|+.|.++
T Consensus       321 SD~v~l~~--~~~~~~~kf~~L~~lSls  346 (419)
T KOG2120|consen  321 SDSVMLKN--DCFQEFFKFNYLQHLSLS  346 (419)
T ss_pred             ccccccCc--hHHHHHHhcchheeeehh
Confidence            65543222  445555556666666664

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.05  E-value=1e-06  Score=81.60  Aligned_cols=269  Identities=18%  Similarity=0.140  Sum_probs=149.5

Q ss_pred             HHHHHHHHhccCCCcceEEEEEecCCcchHHHHHHHHHHcCCcEEEEe-eecccccccccccccccccc--CC--ccccc
Q 013265           81 NWVNQVLSSLEGHCTEELRICFDVFSNHDIDNWIKFALERRVRRLELD-FSRVVYNLRFVGQYTFPSHL--DF--YSSFR  155 (446)
Q Consensus        81 ~~v~~~L~~~~~~~l~~l~l~~~~~~~~~~~~wi~~~~~~~l~~L~l~-~~~~~~~~~~~~~~~lp~~~--~~--~~~~~  155 (446)
                      +.|...+.....  +..+++..+..+ ....+|+....+. .++|... ++....   ....-.+|..+  ++  ...+|
T Consensus        20 ~~v~~~~~~~~s--~~~l~lsgnt~G-~EAa~~i~~~L~~-~~~L~~v~~sd~ft---GR~~~Ei~e~L~~l~~aL~~~~   92 (382)
T KOG1909|consen   20 KDVEEELEPMDS--LTKLDLSGNTFG-TEAARAIAKVLAS-KKELREVNLSDMFT---GRLKDEIPEALKMLSKALLGCP   92 (382)
T ss_pred             hhHHHHhcccCc--eEEEeccCCchh-HHHHHHHHHHHhh-cccceeeehHhhhc---CCcHHHHHHHHHHHHHHHhcCC
Confidence            334444444333  666655433211 1557788877654 2333321 121100   00111233321  11  34678


Q ss_pred             cccceEEEEEEeCh---HHHHHHHhcCCCCcceeeEeccCCCC--ceeEeCCcCccceEEeeccCCCCeEEEECCceeEE
Q 013265          156 HLTDLSLTTVGITG---EVLEHLLCYCCPVLEVLNVAESSSLT--SLKVSGPSLKLKHLKLNKLDNLKDLQLHAPNLLSF  230 (446)
Q Consensus       156 ~L~~L~L~~~~~~~---~~l~~ll~~~cp~Le~L~L~~c~~~~--~~~i~~~~~~L~~L~i~~~~~l~~~~i~~p~L~~l  230 (446)
                      +|++|+|+...|..   ..+..++++ |..|++|.|.+|..-.  .-.+.   .-|.+|...      ...-+.|.|+++
T Consensus        93 ~L~~ldLSDNA~G~~g~~~l~~ll~s-~~~L~eL~L~N~Glg~~ag~~l~---~al~~l~~~------kk~~~~~~Lrv~  162 (382)
T KOG1909|consen   93 KLQKLDLSDNAFGPKGIRGLEELLSS-CTDLEELYLNNCGLGPEAGGRLG---RALFELAVN------KKAASKPKLRVF  162 (382)
T ss_pred             ceeEeeccccccCccchHHHHHHHHh-ccCHHHHhhhcCCCChhHHHHHH---HHHHHHHHH------hccCCCcceEEE
Confidence            99999999998875   368999999 9999999999996321  10111   112222211      111145666666


Q ss_pred             EEccccc--------ccccCCCCCcceEEecccchhhh-hhhhhhhhccCCCceEEEEeecccccccchhcccccccCCC
Q 013265          231 EYSGPIL--------PFSFRNVPNLVDASFWGCFSAYI-AKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIP  301 (446)
Q Consensus       231 ~~~~~~~--------~~~~~~~~~L~~l~l~~~~~~~~-~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~  301 (446)
                      .+.....        ...+...+.|+++.+..+.+... ..-+..-+..+++|+.|+|....+...    ....+...++
T Consensus       163 i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~e----gs~~LakaL~  238 (382)
T KOG1909|consen  163 ICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLE----GSVALAKALS  238 (382)
T ss_pred             EeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhH----HHHHHHHHhc
Confidence            6544321        12344557888888854432211 123345678899999999998544322    2234456678


Q ss_pred             CCCcccEEEEEecC--CCCCHHHHHHHHhhCCCceEEEEEEecccccccccccccccCCCCccccccCCCcEEEEEeee
Q 013265          302 EMCNLKHLEIIGTP--KVNDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTIKDQPYLSFTELRSIRVVELLGFV  378 (446)
Q Consensus       302 ~~~~L~~L~L~~~~--~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~p~c~~~~~~~l~~L~~v~i~~~~  378 (446)
                      .+++|+.|.+..|-  ......-+-.+-+..|+|+.|.+.++.-   ..++.. .+..|..    ....|+++.+.|.+
T Consensus       239 s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeI---t~da~~-~la~~~~----ek~dL~kLnLngN~  309 (382)
T KOG1909|consen  239 SWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEI---TRDAAL-ALAACMA----EKPDLEKLNLNGNR  309 (382)
T ss_pred             ccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchh---HHHHHH-HHHHHHh----cchhhHHhcCCccc
Confidence            89999999999995  3333444455667789999999966521   111111 1112221    12778999998864

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=97.97  E-value=3.3e-06  Score=83.24  Aligned_cols=191  Identities=17%  Similarity=0.188  Sum_probs=101.6

Q ss_pred             cCCcEEEEeeeccccccccccccccccccCCccccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCC--CCce
Q 013265          120 RRVRRLELDFSRVVYNLRFVGQYTFPSHLDFYSSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSS--LTSL  197 (446)
Q Consensus       120 ~~l~~L~l~~~~~~~~~~~~~~~~lp~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~--~~~~  197 (446)
                      .+++++.++...         .-.+|..   .....+|+.|.|.+..++.-.=+ -++. .|.||.|+|+....  +...
T Consensus       102 ~nLq~v~l~~N~---------Lt~IP~f---~~~sghl~~L~L~~N~I~sv~se-~L~~-l~alrslDLSrN~is~i~~~  167 (873)
T KOG4194|consen  102 PNLQEVNLNKNE---------LTRIPRF---GHESGHLEKLDLRHNLISSVTSE-ELSA-LPALRSLDLSRNLISEIPKP  167 (873)
T ss_pred             Ccceeeeeccch---------hhhcccc---cccccceeEEeeeccccccccHH-HHHh-HhhhhhhhhhhchhhcccCC
Confidence            377777775432         1233432   22356799999998776532211 2556 89999999987543  2233


Q ss_pred             eEeCCcCccceEEeeccCCCCeEEEEC----CceeEEEEccccc----ccccCCCCCcceEEecccchhhhhh-------
Q 013265          198 KVSGPSLKLKHLKLNKLDNLKDLQLHA----PNLLSFEYSGPIL----PFSFRNVPNLVDASFWGCFSAYIAK-------  262 (446)
Q Consensus       198 ~i~~~~~~L~~L~i~~~~~l~~~~i~~----p~L~~l~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~-------  262 (446)
                      .+++. .++++|.+.+.. +..+..++    .+|..|.+....+    ...+.++|+|+.+++..+.++...-       
T Consensus       168 sfp~~-~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~  245 (873)
T KOG4194|consen  168 SFPAK-VNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLP  245 (873)
T ss_pred             CCCCC-CCceEEeecccc-ccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCch
Confidence            34443 678888888765 33332221    3566666665422    2456667777777665432211100       


Q ss_pred             ----------hh----hhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEEecC----CCCCHHHHH
Q 013265          263 ----------NL----CQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTP----KVNDLIFCI  324 (446)
Q Consensus       263 ----------~l----~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~----~~~~~~~l~  324 (446)
                                ++    .+.+..+.++++|+|....+..        --..++..+..|++|+|+.+.    ....+    
T Consensus       246 Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~--------vn~g~lfgLt~L~~L~lS~NaI~rih~d~W----  313 (873)
T KOG4194|consen  246 SLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQA--------VNEGWLFGLTSLEQLDLSYNAIQRIHIDSW----  313 (873)
T ss_pred             hhhhhhhhhcCcccccCcceeeecccceeecccchhhh--------hhcccccccchhhhhccchhhhheeecchh----
Confidence                      00    0233344455555544321100        002234556777777777663    11222    


Q ss_pred             HHHhhCCCceEEEEEEe
Q 013265          325 ALLEAAPSLYKFSLKLV  341 (446)
Q Consensus       325 ~ll~~~p~L~~L~l~~~  341 (446)
                         +-|++|+.|+++..
T Consensus       314 ---sftqkL~~LdLs~N  327 (873)
T KOG4194|consen  314 ---SFTQKLKELDLSSN  327 (873)
T ss_pred             ---hhcccceeEecccc
Confidence               44888888888654

>PLN03210 Resistant to P

Probab=97.84  E-value=4.1e-05  Score=86.02  Aligned_cols=120  Identities=20%  Similarity=0.195  Sum_probs=75.2

Q ss_pred             ccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeEeCCcCccceEEeeccCCCCeEEE---ECCceeE
Q 013265          153 SFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQL---HAPNLLS  229 (446)
Q Consensus       153 ~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~l~~~~i---~~p~L~~  229 (446)
                      .+.+|+.|.|.+..+..  +..-+.. +++|+.|+|.+|..+..+.-.+.+++|+.|.+.+|..+..+..   ..++|+.
T Consensus       609 ~~~~L~~L~L~~s~l~~--L~~~~~~-l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~  685 (1153)
T PLN03210        609 RPENLVKLQMQGSKLEK--LWDGVHS-LTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLED  685 (1153)
T ss_pred             CccCCcEEECcCccccc--ccccccc-CCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCE
Confidence            35678888888766542  2222456 8999999999887665543233457899999999887665532   3578888


Q ss_pred             EEEcccc----cccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeec
Q 013265          230 FEYSGPI----LPFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTC  282 (446)
Q Consensus       230 l~~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~  282 (446)
                      |++.++.    .|.. .++++|+.+.+.++..-   .   .+....++++.|.+.+.
T Consensus       686 L~L~~c~~L~~Lp~~-i~l~sL~~L~Lsgc~~L---~---~~p~~~~nL~~L~L~~n  735 (1153)
T PLN03210        686 LDMSRCENLEILPTG-INLKSLYRLNLSGCSRL---K---SFPDISTNISWLDLDET  735 (1153)
T ss_pred             EeCCCCCCcCccCCc-CCCCCCCEEeCCCCCCc---c---ccccccCCcCeeecCCC
Confidence            8888763    2222 26778888888765210   1   12222345666666553

syringae 6; Provisional

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.56  E-value=6.7e-06  Score=78.43  Aligned_cols=182  Identities=16%  Similarity=0.083  Sum_probs=103.8

Q ss_pred             ccccccccceEEEEEEeChH-HHHHHHhcCCCCcceeeEeccCCCCce--eEeCCcCccceEEeeccCC----CCeEEEE
Q 013265          151 YSSFRHLTDLSLTTVGITGE-VLEHLLCYCCPVLEVLNVAESSSLTSL--KVSGPSLKLKHLKLNKLDN----LKDLQLH  223 (446)
Q Consensus       151 ~~~~~~L~~L~L~~~~~~~~-~l~~ll~~~cp~Le~L~L~~c~~~~~~--~i~~~~~~L~~L~i~~~~~----l~~~~i~  223 (446)
                      ...|++++.|+|++.-+... .+.++... .|+||.|.|+.....-..  .....++.|+.|.+.+|.-    ...+...
T Consensus       142 ~k~~~~v~~LdLS~NL~~nw~~v~~i~eq-Lp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~  220 (505)
T KOG3207|consen  142 SKILPNVRDLDLSRNLFHNWFPVLKIAEQ-LPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLT  220 (505)
T ss_pred             hhhCCcceeecchhhhHHhHHHHHHHHHh-cccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHh
Confidence            34689999999999887764 67888889 999999999865432111  1112336788899988861    2344556


Q ss_pred             CCceeEEEEcccc-c---ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccC
Q 013265          224 APNLLSFEYSGPI-L---PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHD  299 (446)
Q Consensus       224 ~p~L~~l~~~~~~-~---~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~  299 (446)
                      .|+|+.|.+.+.. .   .........|+++++..+..-+.  +..-....+|+|+.|.+..+.+..- ..+. ..-...
T Consensus       221 fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~--~~~~~~~~l~~L~~Lnls~tgi~si-~~~d-~~s~~k  296 (505)
T KOG3207|consen  221 FPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDF--DQGYKVGTLPGLNQLNLSSTGIASI-AEPD-VESLDK  296 (505)
T ss_pred             CCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccc--ccccccccccchhhhhccccCcchh-cCCC-ccchhh
Confidence            7888888776652 1   12233345677777765421110  0113445677777777776433211 0000 000112


Q ss_pred             CCCCCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEE
Q 013265          300 IPEMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLK  339 (446)
Q Consensus       300 ~~~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~  339 (446)
                      ...|+.|++|.+..+.- .++.. ..=++..++|+.|.+.
T Consensus       297 t~~f~kL~~L~i~~N~I-~~w~s-l~~l~~l~nlk~l~~~  334 (505)
T KOG3207|consen  297 THTFPKLEYLNISENNI-RDWRS-LNHLRTLENLKHLRIT  334 (505)
T ss_pred             hcccccceeeecccCcc-ccccc-cchhhccchhhhhhcc
Confidence            34677777777776641 11111 1123445666666654

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=97.34  E-value=0.00011  Score=63.44  Aligned_cols=90  Identities=18%  Similarity=0.176  Sum_probs=38.3

Q ss_pred             CCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEEecCCCCCHH
Q 013265          242 RNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTPKVNDLI  321 (446)
Q Consensus       242 ~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~  321 (446)
                      ..+++|++++++.+.......   .+...+|+|+.|.+...-+.       .......+..+++|+.|+|.+++-.....
T Consensus        61 ~~L~~L~~L~L~~N~I~~i~~---~l~~~lp~L~~L~L~~N~I~-------~l~~l~~L~~l~~L~~L~L~~NPv~~~~~  130 (175)
T PF14580_consen   61 PGLPRLKTLDLSNNRISSISE---GLDKNLPNLQELYLSNNKIS-------DLNELEPLSSLPKLRVLSLEGNPVCEKKN  130 (175)
T ss_dssp             ---TT--EEE--SS---S-CH---HHHHH-TT--EEE-TTS----------SCCCCGGGGG-TT--EEE-TT-GGGGSTT
T ss_pred             cChhhhhhcccCCCCCCcccc---chHHhCCcCCEEECcCCcCC-------ChHHhHHHHcCCCcceeeccCCcccchhh
Confidence            345677777776654332211   33456888888888874221       11112345678889999988775111112


Q ss_pred             HHHHHHhhCCCceEEEEEEe
Q 013265          322 FCIALLEAAPSLYKFSLKLV  341 (446)
Q Consensus       322 ~l~~ll~~~p~L~~L~l~~~  341 (446)
                      .=..++..+|+|+.|+-...
T Consensus       131 YR~~vi~~lP~Lk~LD~~~V  150 (175)
T PF14580_consen  131 YRLFVIYKLPSLKVLDGQDV  150 (175)
T ss_dssp             HHHHHHHH-TT-SEETTEET
T ss_pred             HHHHHHHHcChhheeCCEEc
Confidence            34557888999999986543

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=97.33  E-value=3e-05  Score=76.70  Aligned_cols=123  Identities=17%  Similarity=0.182  Sum_probs=60.6

Q ss_pred             CccceEEeeccCCCCeEEEE----CCceeEEEEccccc----ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCce
Q 013265          204 LKLKHLKLNKLDNLKDLQLH----APNLLSFEYSGPIL----PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLH  275 (446)
Q Consensus       204 ~~L~~L~i~~~~~l~~~~i~----~p~L~~l~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~  275 (446)
                      ..|+.|.+++.. ++.+.++    +++|+.|+++...+    +-.+..+.+|+++.+..+.+++...   ..+..+++|+
T Consensus       293 t~L~~L~lS~Na-I~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e---~af~~lssL~  368 (873)
T KOG4194|consen  293 TSLEQLDLSYNA-IQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAE---GAFVGLSSLH  368 (873)
T ss_pred             chhhhhccchhh-hheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHh---hHHHHhhhhh
Confidence            344444444443 5555554    47888887766532    2233445666667666655555444   4555666666


Q ss_pred             EEEEeecccccccchhcccccccCCCCCCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEE
Q 013265          276 TLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSL  338 (446)
Q Consensus       276 ~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l  338 (446)
                      +|+|...-+.   ...+.  -...+..++.|++|.+.++.-. .+  --.-+...++||+|++
T Consensus       369 ~LdLr~N~ls---~~IED--aa~~f~gl~~LrkL~l~gNqlk-~I--~krAfsgl~~LE~LdL  423 (873)
T KOG4194|consen  369 KLDLRSNELS---WCIED--AAVAFNGLPSLRKLRLTGNQLK-SI--PKRAFSGLEALEHLDL  423 (873)
T ss_pred             hhcCcCCeEE---EEEec--chhhhccchhhhheeecCceee-ec--chhhhccCcccceecC
Confidence            6666652110   01111  1122334566666666655300 00  0112344556666655

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.31  E-value=0.00011  Score=68.57  Aligned_cols=230  Identities=16%  Similarity=0.116  Sum_probs=128.6

Q ss_pred             ccccccceEEEEEEeChHH---HHHHHhcCCCCcceeeEeccCCCCc-eeEeCCcCccceEEeeccCCCCeEEEECCcee
Q 013265          153 SFRHLTDLSLTTVGITGEV---LEHLLCYCCPVLEVLNVAESSSLTS-LKVSGPSLKLKHLKLNKLDNLKDLQLHAPNLL  228 (446)
Q Consensus       153 ~~~~L~~L~L~~~~~~~~~---l~~ll~~~cp~Le~L~L~~c~~~~~-~~i~~~~~~L~~L~i~~~~~l~~~~i~~p~L~  228 (446)
                      .+..++.++|++.+|..+.   +...+++ -+.|++-.+++-..-.. -.+..   .|+        .+...-+.+|.|+
T Consensus        28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~-~~~L~~v~~sd~ftGR~~~Ei~e---~L~--------~l~~aL~~~~~L~   95 (382)
T KOG1909|consen   28 PMDSLTKLDLSGNTFGTEAARAIAKVLAS-KKELREVNLSDMFTGRLKDEIPE---ALK--------MLSKALLGCPKLQ   95 (382)
T ss_pred             ccCceEEEeccCCchhHHHHHHHHHHHhh-cccceeeehHhhhcCCcHHHHHH---HHH--------HHHHHHhcCCcee
Confidence            4567788888888887653   4555555 45444444432211000 01110   111        0122223566777


Q ss_pred             EEEEcccccc--------cccCCCCCcceEEecccchhhh-hhh---------hhhhhccCCCceEEEEeecccccccch
Q 013265          229 SFEYSGPILP--------FSFRNVPNLVDASFWGCFSAYI-AKN---------LCQHSIFLVQLHTLKLDTCHLLIGDSE  290 (446)
Q Consensus       229 ~l~~~~~~~~--------~~~~~~~~L~~l~l~~~~~~~~-~~~---------l~~~l~~l~~l~~L~L~~~~~~~~~~~  290 (446)
                      ++++++..+.        -.+.++..|+++++..|..... ...         ..+....-+.|+.+..+..-+.-+   
T Consensus        96 ~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~---  172 (382)
T KOG1909|consen   96 KLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENG---  172 (382)
T ss_pred             EeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccc---
Confidence            7777655221        1244577788888865532211 111         224455567788888776322211   


Q ss_pred             hcccccccCCCCCCcccEEEEEecC-CCCCHHHHHHHHhhCCCceEEEEEEeccccccccccccc-ccCCCCccccccCC
Q 013265          291 YRAGRYLHDIPEMCNLKHLEIIGTP-KVNDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKT-IKDQPYLSFTELRS  368 (446)
Q Consensus       291 ~~~~~~~~~~~~~~~L~~L~L~~~~-~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~-~p~c~~~~~~~l~~  368 (446)
                       ....+...+...++|+.+.+..++ .......+..-++.||+|++|+|+..   .+...+...- -+-|.      +++
T Consensus       173 -ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DN---tft~egs~~LakaL~s------~~~  242 (382)
T KOG1909|consen  173 -GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDN---TFTLEGSVALAKALSS------WPH  242 (382)
T ss_pred             -cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccc---hhhhHHHHHHHHHhcc------cch
Confidence             111222334556788888888886 33333467778888999999999543   2222222111 01122      178


Q ss_pred             CcEEEEEeee-cCcchHHHHHHHHhcCccccceEEecCCC
Q 013265          369 IRVVELLGFV-GHTADFELVMYLIFSAKLLEKIIIDPCPT  407 (446)
Q Consensus       369 L~~v~i~~~~-g~~~e~~~~~~ll~~a~~Le~l~i~~~~~  407 (446)
                      |+.+.+..|. .++.-..+++.+-+.+|.|+.+.+..+.-
T Consensus       243 L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeI  282 (382)
T KOG1909|consen  243 LRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEI  282 (382)
T ss_pred             heeecccccccccccHHHHHHHHhccCCCCceeccCcchh
Confidence            8888888764 55667788888988899999988777643

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.29  E-value=2.1e-05  Score=79.91  Aligned_cols=127  Identities=28%  Similarity=0.316  Sum_probs=82.6

Q ss_pred             ccccccceEEEEEE-eChHHHHHHHhcCCCCcceeeEecc-CCCC-----ceeEeCCcCccceEEeeccCCCCeE-----
Q 013265          153 SFRHLTDLSLTTVG-ITGEVLEHLLCYCCPVLEVLNVAES-SSLT-----SLKVSGPSLKLKHLKLNKLDNLKDL-----  220 (446)
Q Consensus       153 ~~~~L~~L~L~~~~-~~~~~l~~ll~~~cp~Le~L~L~~c-~~~~-----~~~i~~~~~~L~~L~i~~~~~l~~~-----  220 (446)
                      .+++|+.|.+..+. +++..+..+... ||.|++|++..| ....     ...+...+.+|++|.+..|..+.+.     
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l  264 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALK-CPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL  264 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhh-CchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence            47899999999885 666667888888 999999999874 2221     1234446688889999888754433     


Q ss_pred             EEECCceeEEEEcccc-cc-----cccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEee
Q 013265          221 QLHAPNLLSFEYSGPI-LP-----FSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDT  281 (446)
Q Consensus       221 ~i~~p~L~~l~~~~~~-~~-----~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~  281 (446)
                      .-.+|+|++|.+.++. ..     .....+++|+++++..+. ......+..+...+++++.|.+..
T Consensus       265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~-~~~d~~l~~~~~~c~~l~~l~~~~  330 (482)
T KOG1947|consen  265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH-GLTDSGLEALLKNCPNLRELKLLS  330 (482)
T ss_pred             HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc-cchHHHHHHHHHhCcchhhhhhhh
Confidence            2236888888866664 21     233457778888887652 222223335566677777766554

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.24  E-value=4.9e-05  Score=77.27  Aligned_cols=167  Identities=22%  Similarity=0.270  Sum_probs=101.6

Q ss_pred             cccccceEEEEEE--eChHHHHHHHhcCCCCcceeeEeccCCCCce---eEeCCcCccceEEeecc-CCCCeEEEECCce
Q 013265          154 FRHLTDLSLTTVG--ITGEVLEHLLCYCCPVLEVLNVAESSSLTSL---KVSGPSLKLKHLKLNKL-DNLKDLQLHAPNL  227 (446)
Q Consensus       154 ~~~L~~L~L~~~~--~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~---~i~~~~~~L~~L~i~~~-~~l~~~~i~~p~L  227 (446)
                      ...++.+.+..+.  ........+... ||.|++|.+..|..+...   .+...++.|+.|.+.+| ......       
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-------  231 (482)
T KOG1947|consen  160 LANLESLSLSCCGSLLLDKILLRLLSS-CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLS-------  231 (482)
T ss_pred             HHHHheeeeecccccccHHHHHHHHhh-CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccc-------
Confidence            4556666666554  455567778888 999999999999877652   44456678888888774 110000       


Q ss_pred             eEEEEcccccccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCccc
Q 013265          228 LSFEYSGPILPFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLK  307 (446)
Q Consensus       228 ~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~  307 (446)
                            +.........+++|+.+++..+. ......+..+...+++|+.|.+..|..      ....++......+++|+
T Consensus       232 ------~~~~~~~~~~~~~L~~l~l~~~~-~isd~~l~~l~~~c~~L~~L~l~~c~~------lt~~gl~~i~~~~~~L~  298 (482)
T KOG1947|consen  232 ------PLLLLLLLSICRKLKSLDLSGCG-LVTDIGLSALASRCPNLETLSLSNCSN------LTDEGLVSIAERCPSLR  298 (482)
T ss_pred             ------hhHhhhhhhhcCCcCccchhhhh-ccCchhHHHHHhhCCCcceEccCCCCc------cchhHHHHHHHhcCccc
Confidence                  00000122234556666664442 011223335566688999999776532      12223333455678899


Q ss_pred             EEEEEecCCCCCHHHHHHHHhhCCCceEEEEEEec
Q 013265          308 HLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLVS  342 (446)
Q Consensus       308 ~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~  342 (446)
                      +|+|..+....+ .++..+..+||+|++|.+....
T Consensus       299 ~L~l~~c~~~~d-~~l~~~~~~c~~l~~l~~~~~~  332 (482)
T KOG1947|consen  299 ELDLSGCHGLTD-SGLEALLKNCPNLRELKLLSLN  332 (482)
T ss_pred             EEeeecCccchH-HHHHHHHHhCcchhhhhhhhcC
Confidence            999998864433 4677778889999998775443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.03  E-value=0.00021  Score=68.46  Aligned_cols=103  Identities=21%  Similarity=0.235  Sum_probs=69.2

Q ss_pred             ccccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeEe-CCcCccceEEeeccCCCCeE-----EEEC
Q 013265          151 YSSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVS-GPSLKLKHLKLNKLDNLKDL-----QLHA  224 (446)
Q Consensus       151 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~-~~~~~L~~L~i~~~~~l~~~-----~i~~  224 (446)
                      ...+++||+|.|.+|.++-.++..++.. ||+|+.|.|....+...-..+ .-+.+|++|++++.. +..+     ...-
T Consensus       193 ~~~l~~lK~L~l~~CGls~k~V~~~~~~-fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~-li~~~~~~~~~~l  270 (505)
T KOG3207|consen  193 TLLLSHLKQLVLNSCGLSWKDVQWILLT-FPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN-LIDFDQGYKVGTL  270 (505)
T ss_pred             hhhhhhhheEEeccCCCCHHHHHHHHHh-CCcHHHhhhhcccccceecchhhhhhHHhhccccCCc-ccccccccccccc
Confidence            3468999999999999998899999999 999999999987533222111 122689999999876 2222     2234


Q ss_pred             CceeEEEEcccccc-c---------ccCCCCCcceEEeccc
Q 013265          225 PNLLSFEYSGPILP-F---------SFRNVPNLVDASFWGC  255 (446)
Q Consensus       225 p~L~~l~~~~~~~~-~---------~~~~~~~L~~l~l~~~  255 (446)
                      |+|+.|.+..+.++ +         .....|+|+.+.++.+
T Consensus       271 ~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N  311 (505)
T KOG3207|consen  271 PGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISEN  311 (505)
T ss_pred             cchhhhhccccCcchhcCCCccchhhhcccccceeeecccC
Confidence            77777776655321 1         1123466666666544

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.82  E-value=0.00051  Score=72.20  Aligned_cols=214  Identities=21%  Similarity=0.213  Sum_probs=116.3

Q ss_pred             cccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeEeCCcCccceEEeeccCCCCeEEEE---CCceeEEEE
Q 013265          156 HLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQLH---APNLLSFEY  232 (446)
Q Consensus       156 ~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~l~~~~i~---~p~L~~l~~  232 (446)
                      +++..++.........++.+.   .+.|++|.|.+...........     ...++...  ++.+ ++   -.+|++|++
T Consensus        61 ~ltki~l~~~~~~~~~~~~l~---~~~L~sl~LGnl~~~k~~~~~~-----~~idi~~l--L~~~-Ln~~sr~nL~~LdI  129 (699)
T KOG3665|consen   61 NLTKIDLKNVTLQHQTLEMLR---KQDLESLKLGNLDKIKQDYLDD-----ATIDIISL--LKDL-LNEESRQNLQHLDI  129 (699)
T ss_pred             eeEEeeccceecchhHHHHHh---hccccccCCcchHhhhhhhhhh-----hhccHHHH--HHHH-HhHHHHHhhhhcCc
Confidence            566677777776666665443   3339999998765433221100     00000000  0000 01   134444444


Q ss_pred             ccccc-----cccc-CCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcc
Q 013265          233 SGPIL-----PFSF-RNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNL  306 (446)
Q Consensus       233 ~~~~~-----~~~~-~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L  306 (446)
                      +|...     +..+ .-+|+|+.+.+.+..+  ...++..+.+++|+|..|++++..+       ..   ...+..++||
T Consensus       130 ~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~--~~~dF~~lc~sFpNL~sLDIS~TnI-------~n---l~GIS~LknL  197 (699)
T KOG3665|consen  130 SGSELFSNGWPKKIGTMLPSLRSLVISGRQF--DNDDFSQLCASFPNLRSLDISGTNI-------SN---LSGISRLKNL  197 (699)
T ss_pred             cccchhhccHHHHHhhhCcccceEEecCcee--cchhHHHHhhccCccceeecCCCCc-------cC---cHHHhccccH
Confidence            44310     1111 2356777776655322  2234557888899999999888322       11   1345567888


Q ss_pred             cEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEEecccccccccccccccCCCCccccccCCCcEEEEEeeecCcchHHH
Q 013265          307 KHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTIKDQPYLSFTELRSIRVVELLGFVGHTADFEL  386 (446)
Q Consensus       307 ~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~p~c~~~~~~~l~~L~~v~i~~~~g~~~e~~~  386 (446)
                      +.|.+.+-.... ...+..+ -+..+|+.|+|+.......  ...+...-+|..    .   |-.+.+..+.|+.=.-++
T Consensus       198 q~L~mrnLe~e~-~~~l~~L-F~L~~L~vLDIS~~~~~~~--~~ii~qYlec~~----~---LpeLrfLDcSgTdi~~~~  266 (699)
T KOG3665|consen  198 QVLSMRNLEFES-YQDLIDL-FNLKKLRVLDISRDKNNDD--TKIIEQYLECGM----V---LPELRFLDCSGTDINEEI  266 (699)
T ss_pred             HHHhccCCCCCc-hhhHHHH-hcccCCCeeeccccccccc--hHHHHHHHHhcc----c---CccccEEecCCcchhHHH
Confidence            888887664211 1233343 3478889999876533211  112222346653    2   444555566688877788


Q ss_pred             HHHHHhcCccccceEEe
Q 013265          387 VMYLIFSAKLLEKIIID  403 (446)
Q Consensus       387 ~~~ll~~a~~Le~l~i~  403 (446)
                      ++.++..=++|+++..-
T Consensus       267 le~ll~sH~~L~~i~~~  283 (699)
T KOG3665|consen  267 LEELLNSHPNLQQIAAL  283 (699)
T ss_pred             HHHHHHhCccHhhhhhh
Confidence            99999988888888855

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.80  E-value=0.0025  Score=58.43  Aligned_cols=219  Identities=17%  Similarity=0.142  Sum_probs=125.4

Q ss_pred             ccccccceEEEEEEeChH-HHHHHHhcCCCCcceeeEeccCCCCcee-EeCCcCccceEEeeccCCCCe-----EEEECC
Q 013265          153 SFRHLTDLSLTTVGITGE-VLEHLLCYCCPVLEVLNVAESSSLTSLK-VSGPSLKLKHLKLNKLDNLKD-----LQLHAP  225 (446)
Q Consensus       153 ~~~~L~~L~L~~~~~~~~-~l~~ll~~~cp~Le~L~L~~c~~~~~~~-i~~~~~~L~~L~i~~~~~l~~-----~~i~~p  225 (446)
                      .+..++.|+|.+..+++. .+..++.. .|.|+.|.|.+......+. .+.+..+|++|.+.+.. +..     ..-+-|
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~-lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~-L~w~~~~s~l~~lP  146 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQ-LPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTG-LSWTQSTSSLDDLP  146 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhc-CccceEeeccCCcCCCccccCcccccceEEEEEcCCC-CChhhhhhhhhcch
Confidence            578899999999999986 78899999 9999999998776555552 33566788888887754 221     122335


Q ss_pred             ceeEEEEcccccc-------cccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhccccccc
Q 013265          226 NLLSFEYSGPILP-------FSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLH  298 (446)
Q Consensus       226 ~L~~l~~~~~~~~-------~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~  298 (446)
                      .++.|.++....+       ..-.-.+.+..+....| ......+...+.+-+||+..+.+..+++.....+       +
T Consensus       147 ~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c-~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~e-------k  218 (418)
T KOG2982|consen  147 KVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPC-LEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSE-------K  218 (418)
T ss_pred             hhhhhhhccchhhhhccccccccccchhhhhhhcCCc-HHHHHHHHHhHHhhcccchheeeecCcccchhhc-------c
Confidence            5555544433111       00011123444444444 2222334457778899999999988766533111       1


Q ss_pred             CCCCCCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEEecccccccccccccccCCCCccccccCCCcEEEEEe--
Q 013265          299 DIPEMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTIKDQPYLSFTELRSIRVVELLG--  376 (446)
Q Consensus       299 ~~~~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~p~c~~~~~~~l~~L~~v~i~~--  376 (446)
                      ..-.|+.+--|.|.... .+++ .-+.-|..+|.|..|.+.-++-....+.+.    +..+   .  ...|..|.+.+  
T Consensus       219 ~se~~p~~~~LnL~~~~-idsw-asvD~Ln~f~~l~dlRv~~~Pl~d~l~~~e----rr~l---l--IaRL~~v~vLNGs  287 (418)
T KOG2982|consen  219 GSEPFPSLSCLNLGANN-IDSW-ASVDALNGFPQLVDLRVSENPLSDPLRGGE----RRFL---L--IARLTKVQVLNGS  287 (418)
T ss_pred             cCCCCCcchhhhhcccc-cccH-HHHHHHcCCchhheeeccCCcccccccCCc----ceEE---E--EeeccceEEecCc
Confidence            22234444455555543 2333 334557889999999985442211111111    1110   0  03344444432  


Q ss_pred             -ee---cCcchHHHHHHHHh
Q 013265          377 -FV---GHTADFELVMYLIF  392 (446)
Q Consensus       377 -~~---g~~~e~~~~~~ll~  392 (446)
                       .+   -.++|+.|++|-+.
T Consensus       288 kIss~er~dSEr~fVRyym~  307 (418)
T KOG2982|consen  288 KISSRERKDSERRFVRYYMS  307 (418)
T ss_pred             ccchhhhhhhHHHHHHHHhh
Confidence             22   24588999999876

>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.72  E-value=0.002  Score=36.40  Aligned_cols=25  Identities=44%  Similarity=0.666  Sum_probs=22.8

Q ss_pred             cccceEEEEEEeChH-HHHHHHhcCCC
Q 013265          156 HLTDLSLTTVGITGE-VLEHLLCYCCP  181 (446)
Q Consensus       156 ~L~~L~L~~~~~~~~-~l~~ll~~~cp  181 (446)
                      +||+|+|.++.+.++ .++.++++ ||
T Consensus         1 sLKtL~L~~v~f~~~~~l~~LlS~-CP   26 (26)
T PF07723_consen    1 SLKTLHLDSVVFSDEDSLERLLSG-CP   26 (26)
T ss_pred             CCeEEEeeEEEECChhHHHHhhcc-Cc
Confidence            589999999999876 79999999 98

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=96.61  E-value=0.003  Score=67.00  Aligned_cols=30  Identities=30%  Similarity=0.443  Sum_probs=14.1

Q ss_pred             cccceEEEEEEeChHHHHHHHhcCCCCcceeeEecc
Q 013265          156 HLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAES  191 (446)
Q Consensus       156 ~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c  191 (446)
                      +|+.|.+.+..++.     +-.. .|+|+.|++.++
T Consensus       223 ~L~~L~L~~N~Lt~-----LP~l-p~~Lk~LdLs~N  252 (788)
T PRK15387        223 HITTLVIPDNNLTS-----LPAL-PPELRTLEVSGN  252 (788)
T ss_pred             CCCEEEccCCcCCC-----CCCC-CCCCcEEEecCC
Confidence            45555555444332     1123 455555555554

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=96.57  E-value=0.0016  Score=68.95  Aligned_cols=14  Identities=36%  Similarity=0.256  Sum_probs=10.1

Q ss_pred             ccCCCcEEEEEeee
Q 013265          365 ELRSIRVVELLGFV  378 (446)
Q Consensus       365 ~l~~L~~v~i~~~~  378 (446)
                      ++.+|+.|.+.+-.
T Consensus       443 ~L~~L~~LdLs~N~  456 (788)
T PRK15387        443 HLSSETTVNLEGNP  456 (788)
T ss_pred             hccCCCeEECCCCC
Confidence            45788888887743

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.55  E-value=0.0017  Score=68.32  Aligned_cols=39  Identities=15%  Similarity=0.281  Sum_probs=32.3

Q ss_pred             ccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccC
Q 013265          153 SFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESS  192 (446)
Q Consensus       153 ~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~  192 (446)
                      -||+|++|.+.+..+..++|..+..+ +|+|+.|+++++.
T Consensus       146 ~LPsL~sL~i~~~~~~~~dF~~lc~s-FpNL~sLDIS~Tn  184 (699)
T KOG3665|consen  146 MLPSLRSLVISGRQFDNDDFSQLCAS-FPNLRSLDISGTN  184 (699)
T ss_pred             hCcccceEEecCceecchhHHHHhhc-cCccceeecCCCC
Confidence            47888888888888877778888888 8888888888764

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=96.49  E-value=6.3e-05  Score=75.06  Aligned_cols=13  Identities=15%  Similarity=0.146  Sum_probs=9.1

Q ss_pred             ccceEEecCCCCC
Q 013265           45 FSGCLNFDDPFTM   57 (446)
Q Consensus        45 ~~~~L~~~~~~~~   57 (446)
                      .+..++|+.++|.
T Consensus         8 FVrGvDfsgNDFs   20 (1255)
T KOG0444|consen    8 FVRGVDFSGNDFS   20 (1255)
T ss_pred             eeecccccCCcCC
Confidence            4567778777775

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=96.45  E-value=0.0039  Score=53.86  Aligned_cols=133  Identities=17%  Similarity=0.245  Sum_probs=44.5

Q ss_pred             CCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEEecCCCCCHHH
Q 013265          243 NVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTPKVNDLIF  322 (446)
Q Consensus       243 ~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~  322 (446)
                      +.-.++++++.+...... .   ++-..+.+++.|+++.+.+.         . ...++.+++|+.|.+..+.- .++. 
T Consensus        17 n~~~~~~L~L~~n~I~~I-e---~L~~~l~~L~~L~Ls~N~I~---------~-l~~l~~L~~L~~L~L~~N~I-~~i~-   80 (175)
T PF14580_consen   17 NPVKLRELNLRGNQISTI-E---NLGATLDKLEVLDLSNNQIT---------K-LEGLPGLPRLKTLDLSNNRI-SSIS-   80 (175)
T ss_dssp             -----------------------S--TT-TT--EEE-TTS--S------------TT----TT--EEE--SS----S-C-
T ss_pred             cccccccccccccccccc-c---chhhhhcCCCEEECCCCCCc---------c-ccCccChhhhhhcccCCCCC-Cccc-
Confidence            444556666655422211 1   23235678888888874331         1 23466788999999988841 1110 


Q ss_pred             HHHHHhhCCCceEEEEEEecccccccccccccccCCCCccccccCCCcEEEEEeeecCcchHHHHHHHHhcCccccceEE
Q 013265          323 CIALLEAAPSLYKFSLKLVSQYDYESYESVKTIKDQPYLSFTELRSIRVVELLGFVGHTADFELVMYLIFSAKLLEKIII  402 (446)
Q Consensus       323 l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~p~c~~~~~~~l~~L~~v~i~~~~g~~~e~~~~~~ll~~a~~Le~l~i  402 (446)
                       ..+..++|+|++|.+.   ++...+.+.+..+..|        .+|+.+.+.|-- ....-..=.|++...|+|+.+.-
T Consensus        81 -~~l~~~lp~L~~L~L~---~N~I~~l~~l~~L~~l--------~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   81 -EGLDKNLPNLQELYLS---NNKISDLNELEPLSSL--------PKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             -HHHHHH-TT--EEE-T---TS---SCCCCGGGGG---------TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETT
T ss_pred             -cchHHhCCcCCEEECc---CCcCCChHHhHHHHcC--------CCcceeeccCCc-ccchhhHHHHHHHHcChhheeCC
Confidence             1234679999999983   3333333333333333        779999988621 11222445556666677776654


Q ss_pred             ec
Q 013265          403 DP  404 (446)
Q Consensus       403 ~~  404 (446)
                      ..
T Consensus       148 ~~  149 (175)
T PF14580_consen  148 QD  149 (175)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=96.39  E-value=0.0018  Score=68.81  Aligned_cols=31  Identities=16%  Similarity=0.197  Sum_probs=16.0

Q ss_pred             CcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEE
Q 013265          304 CNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKL  340 (446)
Q Consensus       304 ~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~  340 (446)
                      ++|+.|++..+.-. .++.  .+   .++|+.|+|..
T Consensus       346 ~sL~~L~Ls~N~L~-~LP~--~l---p~~L~~LdLs~  376 (754)
T PRK15370        346 PELQVLDVSKNQIT-VLPE--TL---PPTITTLDVSR  376 (754)
T ss_pred             CcccEEECCCCCCC-cCCh--hh---cCCcCEEECCC
Confidence            57777777766311 1111  01   25677777743

>PRK15386 type III secretion protein GogB; Provisional

Probab=95.12  E-value=0.043  Score=53.69  Aligned_cols=13  Identities=31%  Similarity=0.299  Sum_probs=7.3

Q ss_pred             CCcceeeEeccCC
Q 013265          181 PVLEVLNVAESSS  193 (446)
Q Consensus       181 p~Le~L~L~~c~~  193 (446)
                      ++|+.|.+.+|..
T Consensus        94 ~nLe~L~Ls~Cs~  106 (426)
T PRK15386         94 EGLEKLTVCHCPE  106 (426)
T ss_pred             hhhhheEccCccc
Confidence            3566666666543

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=94.78  E-value=0.034  Score=38.74  Aligned_cols=13  Identities=23%  Similarity=0.462  Sum_probs=5.8

Q ss_pred             CCCCCcccEEEEE
Q 013265          300 IPEMCNLKHLEII  312 (446)
Q Consensus       300 ~~~~~~L~~L~L~  312 (446)
                      +..+++|++|.+.
T Consensus        45 f~~l~~L~~L~l~   57 (61)
T PF13855_consen   45 FSNLPNLRYLDLS   57 (61)
T ss_dssp             TTTSTTESEEEET
T ss_pred             HcCCCCCCEEeCc
Confidence            3344444444443

...

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=94.64  E-value=0.0011  Score=66.49  Aligned_cols=37  Identities=22%  Similarity=0.237  Sum_probs=19.3

Q ss_pred             cccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEec
Q 013265          152 SSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAE  190 (446)
Q Consensus       152 ~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~  190 (446)
                      ..+.+|++|.|++..+.-..+.. +.+ ..+|+.|.+++
T Consensus       170 RRL~~LqtL~Ls~NPL~hfQLrQ-LPs-mtsL~vLhms~  206 (1255)
T KOG0444|consen  170 RRLSMLQTLKLSNNPLNHFQLRQ-LPS-MTSLSVLHMSN  206 (1255)
T ss_pred             HHHhhhhhhhcCCChhhHHHHhc-Ccc-chhhhhhhccc
Confidence            45667777777776655443333 223 33344444443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=94.53  E-value=0.019  Score=61.12  Aligned_cols=54  Identities=20%  Similarity=0.255  Sum_probs=25.6

Q ss_pred             ccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeEeCCcCccceEEeeccC
Q 013265          155 RHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLD  215 (446)
Q Consensus       155 ~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~  215 (446)
                      ++|+.|.|+++.++.  +..-+   ..+|+.|++.++.. ..+.-.-+ ++|+.|.++++.
T Consensus       241 ~~L~~L~Ls~N~L~~--LP~~l---~s~L~~L~Ls~N~L-~~LP~~l~-~sL~~L~Ls~N~  294 (754)
T PRK15370        241 DTIQEMELSINRITE--LPERL---PSALQSLDLFHNKI-SCLPENLP-EELRYLSVYDNS  294 (754)
T ss_pred             ccccEEECcCCccCc--CChhH---hCCCCEEECcCCcc-CccccccC-CCCcEEECCCCc
Confidence            356777777665542  11101   33566676664432 22211111 356666666653

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=94.42  E-value=0.032  Score=51.42  Aligned_cols=57  Identities=16%  Similarity=0.286  Sum_probs=33.1

Q ss_pred             CCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEEecC
Q 013265          245 PNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTP  315 (446)
Q Consensus       245 ~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~  315 (446)
                      ..|++++++.+...    .+.+-..-+|.++.|.++...+.      .    ...+..+++|++|+|+++.
T Consensus       284 q~LtelDLS~N~I~----~iDESvKL~Pkir~L~lS~N~i~------~----v~nLa~L~~L~~LDLS~N~  340 (490)
T KOG1259|consen  284 QELTELDLSGNLIT----QIDESVKLAPKLRRLILSQNRIR------T----VQNLAELPQLQLLDLSGNL  340 (490)
T ss_pred             hhhhhccccccchh----hhhhhhhhccceeEEecccccee------e----ehhhhhcccceEeecccch
Confidence            45666666554322    22244556778888888763221      1    1235567788888888773

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=94.00  E-value=0.041  Score=38.34  Aligned_cols=54  Identities=33%  Similarity=0.344  Sum_probs=25.2

Q ss_pred             CceeEEEEccccc----ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEee
Q 013265          225 PNLLSFEYSGPIL----PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDT  281 (446)
Q Consensus       225 p~L~~l~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~  281 (446)
                      |+|++|.+.++..    +..+.++++|+.+++..+.......   ..+..+++|+.|.+.+
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~---~~f~~l~~L~~L~l~~   58 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPP---DAFSNLPNLRYLDLSN   58 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEET---TTTTTSTTESEEEETS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCH---HHHcCCCCCCEEeCcC
Confidence            4555555555421    1234455555555555443322222   3445555555555544

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=93.63  E-value=0.13  Score=50.34  Aligned_cols=134  Identities=21%  Similarity=0.241  Sum_probs=68.2

Q ss_pred             cccccceEEEEEEeChHHHHHHHhcCCC-CcceeeEeccCCCCceeEeCCcCccceEEeeccCCCCeEEEECCceeEEEE
Q 013265          154 FRHLTDLSLTTVGITGEVLEHLLCYCCP-VLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQLHAPNLLSFEY  232 (446)
Q Consensus       154 ~~~L~~L~L~~~~~~~~~l~~ll~~~cp-~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~l~~~~i~~p~L~~l~~  232 (446)
                      +++++.|+++++.++.-      .. .| +|++|.+.+|..+..+.-.-+ ++|++|.+.+|..+..+   -++|++|.+
T Consensus        51 ~~~l~~L~Is~c~L~sL------P~-LP~sLtsL~Lsnc~nLtsLP~~LP-~nLe~L~Ls~Cs~L~sL---P~sLe~L~L  119 (426)
T PRK15386         51 ARASGRLYIKDCDIESL------PV-LPNELTEITIENCNNLTTLPGSIP-EGLEKLTVCHCPEISGL---PESVRSLEI  119 (426)
T ss_pred             hcCCCEEEeCCCCCccc------CC-CCCCCcEEEccCCCCcccCCchhh-hhhhheEccCccccccc---ccccceEEe
Confidence            56777777777644321      12 33 477777777776544321112 46777777777555432   245666666


Q ss_pred             cccccccccCCC-CCcceEEecccchhhhhhhhhhhhccC-CCceEEEEeecccccccchhcccccccCCCCCCcccEEE
Q 013265          233 SGPILPFSFRNV-PNLVDASFWGCFSAYIAKNLCQHSIFL-VQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLE  310 (446)
Q Consensus       233 ~~~~~~~~~~~~-~~L~~l~l~~~~~~~~~~~l~~~l~~l-~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  310 (446)
                      .+.... .+..+ ++|+++.+........ .   .+-..+ ++|+.|.+.+|...         .++..+|  ..|++|.
T Consensus       120 ~~n~~~-~L~~LPssLk~L~I~~~n~~~~-~---~lp~~LPsSLk~L~Is~c~~i---------~LP~~LP--~SLk~L~  183 (426)
T PRK15386        120 KGSATD-SIKNVPNGLTSLSINSYNPENQ-A---RIDNLISPSLKTLSLTGCSNI---------ILPEKLP--ESLQSIT  183 (426)
T ss_pred             CCCCCc-ccccCcchHhheeccccccccc-c---ccccccCCcccEEEecCCCcc---------cCccccc--ccCcEEE
Confidence            543221 12333 3466666532210000 0   111122 47888888774221         1222233  5788888


Q ss_pred             EEec
Q 013265          311 IIGT  314 (446)
Q Consensus       311 L~~~  314 (446)
                      +..+
T Consensus       184 ls~n  187 (426)
T PRK15386        184 LHIE  187 (426)
T ss_pred             eccc
Confidence            7654

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.82  E-value=0.013  Score=53.84  Aligned_cols=102  Identities=20%  Similarity=0.151  Sum_probs=68.5

Q ss_pred             ccccccceEEEEEEeChH-HHHHHHhcCCCCcceeeEeccCCC---CceeEeCCcCccceEEeeccCC---CCeEEEECC
Q 013265          153 SFRHLTDLSLTTVGITGE-VLEHLLCYCCPVLEVLNVAESSSL---TSLKVSGPSLKLKHLKLNKLDN---LKDLQLHAP  225 (446)
Q Consensus       153 ~~~~L~~L~L~~~~~~~~-~l~~ll~~~cp~Le~L~L~~c~~~---~~~~i~~~~~~L~~L~i~~~~~---l~~~~i~~p  225 (446)
                      +...+..|.+.++.+..+ ++..+-+. |..+++|+|.+....   ....|....|.|+.|.++..+-   +....+-..
T Consensus        43 s~ra~ellvln~~~id~~gd~~~~~~~-~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~  121 (418)
T KOG2982|consen   43 SLRALELLVLNGSIIDNEGDVMLFGSS-VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLK  121 (418)
T ss_pred             cccchhhheecCCCCCcchhHHHHHHH-hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCccccc
Confidence            344666788888888765 67777888 999999999875421   1123334558899999987662   222333456


Q ss_pred             ceeEEEEccccccc-----ccCCCCCcceEEeccc
Q 013265          226 NLLSFEYSGPILPF-----SFRNVPNLVDASFWGC  255 (446)
Q Consensus       226 ~L~~l~~~~~~~~~-----~~~~~~~L~~l~l~~~  255 (446)
                      ||+++.++|...++     .+.+.|.++++.++++
T Consensus       122 nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N  156 (418)
T KOG2982|consen  122 NLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN  156 (418)
T ss_pred             ceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence            89999998886543     3446677777766554

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=92.49  E-value=0.09  Score=57.17  Aligned_cols=99  Identities=19%  Similarity=0.135  Sum_probs=50.2

Q ss_pred             CCCcceeeEeccCC-CCce--eEeCCcCccceEEeeccCCCCeEEE---ECCceeEEEEccccc---ccccCCCCCcceE
Q 013265          180 CPVLEVLNVAESSS-LTSL--KVSGPSLKLKHLKLNKLDNLKDLQL---HAPNLLSFEYSGPIL---PFSFRNVPNLVDA  250 (446)
Q Consensus       180 cp~Le~L~L~~c~~-~~~~--~i~~~~~~L~~L~i~~~~~l~~~~i---~~p~L~~l~~~~~~~---~~~~~~~~~L~~l  250 (446)
                      ||.|..|-+..... +..+  .+-...+.|+.|++++|..+..+.-   +--+|++|++.+..+   |..++++..|..+
T Consensus       544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~L  623 (889)
T KOG4658|consen  544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYL  623 (889)
T ss_pred             CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhhee
Confidence            66666666655432 1111  1111235566666666554444311   134555555555532   4455556666666


Q ss_pred             EecccchhhhhhhhhhhhccCCCceEEEEee
Q 013265          251 SFWGCFSAYIAKNLCQHSIFLVQLHTLKLDT  281 (446)
Q Consensus       251 ~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~  281 (446)
                      ++.........   ..+...+++|+.|.+..
T Consensus       624 nl~~~~~l~~~---~~i~~~L~~Lr~L~l~~  651 (889)
T KOG4658|consen  624 NLEVTGRLESI---PGILLELQSLRVLRLPR  651 (889)
T ss_pred             ccccccccccc---cchhhhcccccEEEeec
Confidence            66543211111   25566677888888776

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.36  E-value=0.016  Score=50.33  Aligned_cols=62  Identities=23%  Similarity=0.243  Sum_probs=43.5

Q ss_pred             ceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCcee---EeCCcCccceEEeeccCCCCeEEE
Q 013265          159 DLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLK---VSGPSLKLKHLKLNKLDNLKDLQL  222 (446)
Q Consensus       159 ~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~---i~~~~~~L~~L~i~~~~~l~~~~i  222 (446)
                      .++=+++.+..+++++ +.. ++.++.|++.+|..+.+..   +....++|+.|++++|+.+.+-.+
T Consensus       105 aVDAsds~I~~eGle~-L~~-l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL  169 (221)
T KOG3864|consen  105 AVDASDSSIMYEGLEH-LRD-LRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGL  169 (221)
T ss_pred             EEecCCchHHHHHHHH-Hhc-cchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHH
Confidence            3444445566667777 566 9999999999999877652   334557888888888886555443

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=92.35  E-value=0.082  Score=48.97  Aligned_cols=38  Identities=24%  Similarity=0.368  Sum_probs=32.2

Q ss_pred             cCCcCCCCChHHHHHHHh-----CCChhHHHHHhhccchhhhh
Q 013265            4 EGDHINELPDDILVNILS-----RLTMKEAVRTSIISSRWRYL   41 (446)
Q Consensus         4 ~~D~is~LPd~iL~~ILs-----~Lp~kd~~rts~lSkrWr~l   41 (446)
                      ..+.|+.||||||..||.     .++.++..++|+|||.|+..
T Consensus       103 ~~~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~  145 (366)
T KOG2997|consen  103 ELISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKC  145 (366)
T ss_pred             hhhhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHH
Confidence            446688999999999986     45679999999999999854

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=92.23  E-value=0.1  Score=50.41  Aligned_cols=36  Identities=31%  Similarity=0.385  Sum_probs=32.5

Q ss_pred             CCCCChHHHHHHHhCCC-hhHHHHHhhccchhhhhcc
Q 013265            8 INELPDDILVNILSRLT-MKEAVRTSIISSRWRYLWR   43 (446)
Q Consensus         8 is~LPd~iL~~ILs~Lp-~kd~~rts~lSkrWr~lw~   43 (446)
                      .++||+|+|..|..+|| .-|.+|-+.|||.||..-.
T Consensus         4 Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~   40 (373)
T PLN03215          4 WSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVS   40 (373)
T ss_pred             hhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcc
Confidence            57899999999999997 6899999999999997543

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=92.21  E-value=0.064  Score=50.01  Aligned_cols=37  Identities=32%  Similarity=0.547  Sum_probs=34.5

Q ss_pred             CCcCCCCC----hHHHHHHHhCCChhHHHHHhhccchhhhh
Q 013265            5 GDHINELP----DDILVNILSRLTMKEAVRTSIISSRWRYL   41 (446)
Q Consensus         5 ~D~is~LP----d~iL~~ILs~Lp~kd~~rts~lSkrWr~l   41 (446)
                      .|-|..||    |++-..|||+|...+..++-.+||+|+.+
T Consensus        72 rDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~  112 (499)
T KOG0281|consen   72 RDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRV  112 (499)
T ss_pred             HHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHH
Confidence            57789999    99999999999999999999999999864

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=91.85  E-value=0.12  Score=47.20  Aligned_cols=173  Identities=16%  Similarity=0.090  Sum_probs=93.5

Q ss_pred             cccccccceEEEEEEeCh---HHHHHHHhcCCCCcceeeEeccCCC--CceeEeCCcCccceEEeeccCCCCeEEEECCc
Q 013265          152 SSFRHLTDLSLTTVGITG---EVLEHLLCYCCPVLEVLNVAESSSL--TSLKVSGPSLKLKHLKLNKLDNLKDLQLHAPN  226 (446)
Q Consensus       152 ~~~~~L~~L~L~~~~~~~---~~l~~ll~~~cp~Le~L~L~~c~~~--~~~~i~~~~~~L~~L~i~~~~~l~~~~i~~p~  226 (446)
                      ..||+|++.+|+...|..   +.+..++++ ...|++|.+.+|..-  +.=+|.   +.|.+|...     +. .-+.|.
T Consensus        89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~-~t~l~HL~l~NnGlGp~aG~rig---kal~~la~n-----KK-aa~kp~  158 (388)
T COG5238          89 LKCPRLQKVDLSDNAFGSEFPEELGDLISS-STDLVHLKLNNNGLGPIAGGRIG---KALFHLAYN-----KK-AADKPK  158 (388)
T ss_pred             hcCCcceeeeccccccCcccchHHHHHHhc-CCCceeEEeecCCCCccchhHHH---HHHHHHHHH-----hh-hccCCC
Confidence            467888888888877764   357788888 888888888887431  111222   122222221     11 125677


Q ss_pred             eeEEEEccccc---c-----cccCCCCCcceEEecccchhhh--hhhhhhhhccCCCceEEEEeecccccccchhccccc
Q 013265          227 LLSFEYSGPIL---P-----FSFRNVPNLVDASFWGCFSAYI--AKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRY  296 (446)
Q Consensus       227 L~~l~~~~~~~---~-----~~~~~~~~L~~l~l~~~~~~~~--~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~  296 (446)
                      |+++.......   +     ..+..-..|.++.+..+.++..  ..-..--+.-+.+|+.|+|...++...++    .++
T Consensus       159 Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS----~~L  234 (388)
T COG5238         159 LEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGS----RYL  234 (388)
T ss_pred             ceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhH----HHH
Confidence            77775443311   0     0112224566776644322211  11011223557889999998865543322    233


Q ss_pred             ccCCCCCCcccEEEEEecCCCCCHHHHHHHHhh-----CCCceEEEEEE
Q 013265          297 LHDIPEMCNLKHLEIIGTPKVNDLIFCIALLEA-----APSLYKFSLKL  340 (446)
Q Consensus       297 ~~~~~~~~~L~~L~L~~~~~~~~~~~l~~ll~~-----~p~L~~L~l~~  340 (446)
                      ...++..++|+.|.+..|--..  .+...+++.     .|+|..|-.++
T Consensus       235 a~al~~W~~lrEL~lnDClls~--~G~~~v~~~f~e~~~p~l~~L~~~Y  281 (388)
T COG5238         235 ADALCEWNLLRELRLNDCLLSN--EGVKSVLRRFNEKFVPNLMPLPGDY  281 (388)
T ss_pred             HHHhcccchhhhccccchhhcc--ccHHHHHHHhhhhcCCCccccccch
Confidence            3445667889999998884111  133334443     56666666543

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=91.07  E-value=0.0084  Score=50.64  Aligned_cols=18  Identities=28%  Similarity=0.545  Sum_probs=8.5

Q ss_pred             ccCCCCCCcccEEEEEec
Q 013265          297 LHDIPEMCNLKHLEIIGT  314 (446)
Q Consensus       297 ~~~~~~~~~L~~L~L~~~  314 (446)
                      ++.+..+..|++|++.++
T Consensus       166 pkeig~lt~lrelhiqgn  183 (264)
T KOG0617|consen  166 PKEIGDLTRLRELHIQGN  183 (264)
T ss_pred             cHHHHHHHHHHHHhcccc
Confidence            333444455555555544

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.56  E-value=0.018  Score=52.57  Aligned_cols=49  Identities=16%  Similarity=0.182  Sum_probs=30.5

Q ss_pred             CccceEEeeccCCCCeEEE--ECCceeEEEEcccccc--cccCCCCCcceEEec
Q 013265          204 LKLKHLKLNKLDNLKDLQL--HAPNLLSFEYSGPILP--FSFRNVPNLVDASFW  253 (446)
Q Consensus       204 ~~L~~L~i~~~~~l~~~~i--~~p~L~~l~~~~~~~~--~~~~~~~~L~~l~l~  253 (446)
                      .+.++|..++|. +.+|.|  .+|.|+.|.++-..+.  -.+.+|.+|+++++.
T Consensus        19 ~~vkKLNcwg~~-L~DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLR   71 (388)
T KOG2123|consen   19 ENVKKLNCWGCG-LDDISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLR   71 (388)
T ss_pred             HHhhhhcccCCC-ccHHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHH
Confidence            356778888887 666654  4677777777654322  234456666666663

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=90.18  E-value=0.12  Score=33.29  Aligned_cols=35  Identities=34%  Similarity=0.488  Sum_probs=24.0

Q ss_pred             ccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccC
Q 013265          155 RHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESS  192 (446)
Q Consensus       155 ~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~  192 (446)
                      ++|++|.|.+..+++  +...++. ||+|+.|.+.++.
T Consensus         1 ~~L~~L~l~~N~i~~--l~~~l~~-l~~L~~L~l~~N~   35 (44)
T PF12799_consen    1 KNLEELDLSNNQITD--LPPELSN-LPNLETLNLSNNP   35 (44)
T ss_dssp             TT-SEEEETSSS-SS--HGGHGTT-CTTSSEEEETSSC
T ss_pred             CcceEEEccCCCCcc--cCchHhC-CCCCCEEEecCCC
Confidence            467888888877764  4444677 8888888888774

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=89.74  E-value=0.42  Score=41.82  Aligned_cols=103  Identities=20%  Similarity=0.172  Sum_probs=58.2

Q ss_pred             hhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEEecC--CCCCHHHHHHHHhhCCCceEEEEEEecc
Q 013265          266 QHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTP--KVNDLIFCIALLEAAPSLYKFSLKLVSQ  343 (446)
Q Consensus       266 ~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~--~~~~~~~l~~ll~~~p~L~~L~l~~~~~  343 (446)
                      ..+..++.|.+|.++..-+.        ..-+.....+++|+.|.|.++.  ...++.    =|.+||.|+.|++...+-
T Consensus        58 ~~lp~l~rL~tLll~nNrIt--------~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~----pLa~~p~L~~Ltll~Npv  125 (233)
T KOG1644|consen   58 DNLPHLPRLHTLLLNNNRIT--------RIDPDLDTFLPNLKTLILTNNSIQELGDLD----PLASCPKLEYLTLLGNPV  125 (233)
T ss_pred             ccCCCccccceEEecCCcce--------eeccchhhhccccceEEecCcchhhhhhcc----hhccCCccceeeecCCch
Confidence            34566778888888773221        1112233467889999998874  223322    357899999999966522


Q ss_pred             cccccccccccccCCCCccccccCCCcEEEEEeeecCcchHHHHHH
Q 013265          344 YDYESYESVKTIKDQPYLSFTELRSIRVVELLGFVGHTADFELVMY  389 (446)
Q Consensus       344 ~~~~~~~~~~~~p~c~~~~~~~l~~L~~v~i~~~~g~~~e~~~~~~  389 (446)
                         ......+..--|      .+.+|+++.+.+..-.+.+-....|
T Consensus       126 ---~~k~~YR~yvl~------klp~l~~LDF~kVt~~ER~~A~~~f  162 (233)
T KOG1644|consen  126 ---EHKKNYRLYVLY------KLPSLRTLDFQKVTRKEREEAEVFF  162 (233)
T ss_pred             ---hcccCceeEEEE------ecCcceEeehhhhhHHHHHHHHHHh
Confidence               111111111112      2367777777776655555444444

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.69  E-value=0.088  Score=45.88  Aligned_cols=63  Identities=24%  Similarity=0.303  Sum_probs=46.8

Q ss_pred             cccccccceEEEEEE-eChHHHHHHHhcCCCCcceeeEeccCCCCceeEeC--CcCccceEEeeccC
Q 013265          152 SSFRHLTDLSLTTVG-ITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSG--PSLKLKHLKLNKLD  215 (446)
Q Consensus       152 ~~~~~L~~L~L~~~~-~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~~--~~~~L~~L~i~~~~  215 (446)
                      .+++.++.|.+.+|. +.|..++.+-.. .|+|++|+|+.|..+++--+..  .+++|+.|.+.+.+
T Consensus       122 ~~l~~i~~l~l~~ck~~dD~~L~~l~~~-~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~  187 (221)
T KOG3864|consen  122 RDLRSIKSLSLANCKYFDDWCLERLGGL-APSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLP  187 (221)
T ss_pred             hccchhhhheeccccchhhHHHHHhccc-ccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCch
Confidence            356778888888887 778888888777 9999999999998766542221  33677777776554

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=87.56  E-value=0.66  Score=50.66  Aligned_cols=63  Identities=19%  Similarity=0.184  Sum_probs=33.4

Q ss_pred             hhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEE
Q 013265          266 QHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKL  340 (446)
Q Consensus       266 ~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~  340 (446)
                      +++..+|.|+.|+|++        +.....+|..+..+-+|+.|+++...    +..+..-+++...|..|++..
T Consensus       565 ~ff~~m~~LrVLDLs~--------~~~l~~LP~~I~~Li~LryL~L~~t~----I~~LP~~l~~Lk~L~~Lnl~~  627 (889)
T KOG4658|consen  565 EFFRSLPLLRVLDLSG--------NSSLSKLPSSIGELVHLRYLDLSDTG----ISHLPSGLGNLKKLIYLNLEV  627 (889)
T ss_pred             HHHhhCcceEEEECCC--------CCccCcCChHHhhhhhhhcccccCCC----ccccchHHHHHHhhheecccc
Confidence            4556666666666665        22334445555556666666666553    112333344445556666543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.50  E-value=0.021  Score=52.05  Aligned_cols=30  Identities=13%  Similarity=0.162  Sum_probs=13.8

Q ss_pred             ECCceeEEEEcccccc-----cccCCCCCcceEEe
Q 013265          223 HAPNLLSFEYSGPILP-----FSFRNVPNLVDASF  252 (446)
Q Consensus       223 ~~p~L~~l~~~~~~~~-----~~~~~~~~L~~l~l  252 (446)
                      .|.+|+.|++.-..++     ..+.++|+|+.+.|
T Consensus        61 rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL   95 (388)
T KOG2123|consen   61 RCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL   95 (388)
T ss_pred             HHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence            3455555544433211     23445555555555

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=86.62  E-value=0.063  Score=56.82  Aligned_cols=37  Identities=22%  Similarity=0.296  Sum_probs=21.3

Q ss_pred             ccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEecc
Q 013265          153 SFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAES  191 (446)
Q Consensus       153 ~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c  191 (446)
                      +++.|..|.+.+..++|..+. ++-+ .++|+.|.|.+.
T Consensus       357 ~~~~Lq~LylanN~Ltd~c~p-~l~~-~~hLKVLhLsyN  393 (1081)
T KOG0618|consen  357 NHAALQELYLANNHLTDSCFP-VLVN-FKHLKVLHLSYN  393 (1081)
T ss_pred             hhHHHHHHHHhcCcccccchh-hhcc-ccceeeeeeccc
Confidence            345566666666666655443 3445 666666666655

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=86.24  E-value=1  Score=43.42  Aligned_cols=95  Identities=17%  Similarity=0.149  Sum_probs=67.2

Q ss_pred             CCceeEEEEccccc----ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccC
Q 013265          224 APNLLSFEYSGPIL----PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHD  299 (446)
Q Consensus       224 ~p~L~~l~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~  299 (446)
                      -|+|+.+++++..+    .-.+..+..+++++++.+.+.+...   ..++.+++|+.|+|.+.-+       . ...+..
T Consensus       273 L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~---~~f~~ls~L~tL~L~~N~i-------t-~~~~~a  341 (498)
T KOG4237|consen  273 LPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSS---GMFQGLSGLKTLSLYDNQI-------T-TVAPGA  341 (498)
T ss_pred             cccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHH---HhhhccccceeeeecCCee-------E-EEeccc
Confidence            37889998888743    2356788899999998887766655   7889999999999998322       1 112345


Q ss_pred             CCCCCcccEEEEEecC--CCCCHHHHHHHHhh
Q 013265          300 IPEMCNLKHLEIIGTP--KVNDLIFCIALLEA  329 (446)
Q Consensus       300 ~~~~~~L~~L~L~~~~--~~~~~~~l~~ll~~  329 (446)
                      +.....|.+|.|-.+.  -...+.++..-+++
T Consensus       342 F~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~  373 (498)
T KOG4237|consen  342 FQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRK  373 (498)
T ss_pred             ccccceeeeeehccCcccCccchHHHHHHHhh
Confidence            5667788888888775  23445677776665

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=86.05  E-value=0.57  Score=42.92  Aligned_cols=178  Identities=16%  Similarity=0.110  Sum_probs=94.3

Q ss_pred             cccccceEEEEEEe---ChH------HHHHHHhcCCCCcceeeEeccC-CCCce----eEeCCcCccceEEeeccCCCCe
Q 013265          154 FRHLTDLSLTTVGI---TGE------VLEHLLCYCCPVLEVLNVAESS-SLTSL----KVSGPSLKLKHLKLNKLDNLKD  219 (446)
Q Consensus       154 ~~~L~~L~L~~~~~---~~~------~l~~ll~~~cp~Le~L~L~~c~-~~~~~----~i~~~~~~L~~L~i~~~~~l~~  219 (446)
                      -.+|+...++....   .++      .+...+.+ ||.|+..+|++.- +.+.+    ..-++...|++|.+.+|. +..
T Consensus        57 ~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlk-cp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp  134 (388)
T COG5238          57 VRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLK-CPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG-LGP  134 (388)
T ss_pred             hcceeEeehhhhhhcccHHHHHHHHHHHHHHHhc-CCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC-CCc
Confidence            34566555555432   122      24556678 9999999998653 33222    122223567777777765 222


Q ss_pred             EEEE--CCceeEEEEcccccccccCCCCCcceEEecccchhhhhhh-hhhhhccCCCceEEEEeecccccccchhccccc
Q 013265          220 LQLH--APNLLSFEYSGPILPFSFRNVPNLVDASFWGCFSAYIAKN-LCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRY  296 (446)
Q Consensus       220 ~~i~--~p~L~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~-l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~  296 (446)
                      +.-.  +..|..|.+.     -...+.|.|+.+....+.+...... +...++.-.+++.+.+....+...+.  .... 
T Consensus       135 ~aG~rigkal~~la~n-----KKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv--~~L~-  206 (388)
T COG5238         135 IAGGRIGKALFHLAYN-----KKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGV--TMLA-  206 (388)
T ss_pred             cchhHHHHHHHHHHHH-----hhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchh--HHHH-
Confidence            2100  0111111111     1234677888877755433222221 22344555688888888743321100  0000 


Q ss_pred             ccCCCCCCcccEEEEEecC-CCCCHHHHHHHHhhCCCceEEEEEEe
Q 013265          297 LHDIPEMCNLKHLEIIGTP-KVNDLIFCIALLEAAPSLYKFSLKLV  341 (446)
Q Consensus       297 ~~~~~~~~~L~~L~L~~~~-~~~~~~~l~~ll~~~p~L~~L~l~~~  341 (446)
                      ...+..+.+|+.|+|..+. ....-..+...+...|.|+.|.+..+
T Consensus       207 ~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDC  252 (388)
T COG5238         207 FLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDC  252 (388)
T ss_pred             HHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccch
Confidence            1234567899999998775 22233456677788888888888544

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=85.96  E-value=0.44  Score=41.70  Aligned_cols=91  Identities=21%  Similarity=0.235  Sum_probs=57.0

Q ss_pred             cCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEEecCCCCCH
Q 013265          241 FRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTPKVNDL  320 (446)
Q Consensus       241 ~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~  320 (446)
                      +.++++|..+.++.+.+-....   .+...+|++..|.|.+..++.       ......+..||.|++|++..+.....-
T Consensus        60 lp~l~rL~tLll~nNrIt~I~p---~L~~~~p~l~~L~LtnNsi~~-------l~dl~pLa~~p~L~~Ltll~Npv~~k~  129 (233)
T KOG1644|consen   60 LPHLPRLHTLLLNNNRITRIDP---DLDTFLPNLKTLILTNNSIQE-------LGDLDPLASCPKLEYLTLLGNPVEHKK  129 (233)
T ss_pred             CCCccccceEEecCCcceeecc---chhhhccccceEEecCcchhh-------hhhcchhccCCccceeeecCCchhccc
Confidence            4456677777776543333333   455677889999998854432       122334667889999999888522111


Q ss_pred             HHHHHHHhhCCCceEEEEEEe
Q 013265          321 IFCIALLEAAPSLYKFSLKLV  341 (446)
Q Consensus       321 ~~l~~ll~~~p~L~~L~l~~~  341 (446)
                      .-=..++...|+|+.|+.+-.
T Consensus       130 ~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  130 NYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             CceeEEEEecCcceEeehhhh
Confidence            112346778899999998644

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=85.91  E-value=0.41  Score=26.80  Aligned_cols=17  Identities=29%  Similarity=0.706  Sum_probs=13.0

Q ss_pred             CCCcceeeEeccCCCCc
Q 013265          180 CPVLEVLNVAESSSLTS  196 (446)
Q Consensus       180 cp~Le~L~L~~c~~~~~  196 (446)
                      ||.|++|+|.+|..+++
T Consensus         1 c~~L~~L~l~~C~~itD   17 (26)
T smart00367        1 CPNLRELDLSGCTNITD   17 (26)
T ss_pred             CCCCCEeCCCCCCCcCH
Confidence            77888888888876654

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=85.61  E-value=0.019  Score=48.59  Aligned_cols=38  Identities=18%  Similarity=0.255  Sum_probs=18.1

Q ss_pred             CCCCCCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEE
Q 013265          299 DIPEMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKL  340 (446)
Q Consensus       299 ~~~~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~  340 (446)
                      ....+.+|+.|.+..+    +...+..-+.....|++|+|+.
T Consensus       145 dvg~lt~lqil~lrdn----dll~lpkeig~lt~lrelhiqg  182 (264)
T KOG0617|consen  145 DVGKLTNLQILSLRDN----DLLSLPKEIGDLTRLRELHIQG  182 (264)
T ss_pred             hhhhhcceeEEeeccC----chhhCcHHHHHHHHHHHHhccc
Confidence            3344455555544433    3334444444455566666643

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=83.46  E-value=0.2  Score=53.27  Aligned_cols=79  Identities=24%  Similarity=0.309  Sum_probs=39.8

Q ss_pred             ccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeEeCCcCccceEEeeccCCCCeEEEE----CCcee
Q 013265          153 SFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQLH----APNLL  228 (446)
Q Consensus       153 ~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~l~~~~i~----~p~L~  228 (446)
                      +++.|+.|.|++..++.  +..-++. |+.|+.|...........++.. ++.|+.++++... +..+.+.    .|+|+
T Consensus       405 kle~LeeL~LSGNkL~~--Lp~tva~-~~~L~tL~ahsN~l~~fPe~~~-l~qL~~lDlS~N~-L~~~~l~~~~p~p~Lk  479 (1081)
T KOG0618|consen  405 KLEELEELNLSGNKLTT--LPDTVAN-LGRLHTLRAHSNQLLSFPELAQ-LPQLKVLDLSCNN-LSEVTLPEALPSPNLK  479 (1081)
T ss_pred             chHHhHHHhcccchhhh--hhHHHHh-hhhhHHHhhcCCceeechhhhh-cCcceEEecccch-hhhhhhhhhCCCcccc
Confidence            34444444455444332  1122344 5555555555443333333332 2677777776554 5544332    26788


Q ss_pred             EEEEcccc
Q 013265          229 SFEYSGPI  236 (446)
Q Consensus       229 ~l~~~~~~  236 (446)
                      +|+++|..
T Consensus       480 yLdlSGN~  487 (1081)
T KOG0618|consen  480 YLDLSGNT  487 (1081)
T ss_pred             eeeccCCc
Confidence            88887764

>PF13013 F-box-like_2: F-box-like domain

Probab=81.60  E-value=1.1  Score=35.24  Aligned_cols=37  Identities=24%  Similarity=0.363  Sum_probs=29.7

Q ss_pred             cCCCCChHHHHHHHhCCChhHHHHHhhccc--h-hhhh-cc
Q 013265            7 HINELPDDILVNILSRLTMKEAVRTSIISS--R-WRYL-WR   43 (446)
Q Consensus         7 ~is~LPd~iL~~ILs~Lp~kd~~rts~lSk--r-Wr~l-w~   43 (446)
                      .+.+||+||+..|+.+-...+...+...++  | |++. |.
T Consensus        21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~~~r~~r~~~~~   61 (109)
T PF13013_consen   21 TLLDLPWELLQLIFDYCNDPILLALSRTCRAYRSWRDHIWY   61 (109)
T ss_pred             chhhChHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            377899999999999999999988887766  4 4443 55

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=81.57  E-value=0.86  Score=42.33  Aligned_cols=215  Identities=17%  Similarity=0.159  Sum_probs=107.3

Q ss_pred             HHHHHHhcCCCCcceeeEeccCCC-Cc---------eeEeCCcCccceEEeeccC--CCCeEEEECCceeEEEEcccccc
Q 013265          171 VLEHLLCYCCPVLEVLNVAESSSL-TS---------LKVSGPSLKLKHLKLNKLD--NLKDLQLHAPNLLSFEYSGPILP  238 (446)
Q Consensus       171 ~l~~ll~~~cp~Le~L~L~~c~~~-~~---------~~i~~~~~~L~~L~i~~~~--~l~~~~i~~p~L~~l~~~~~~~~  238 (446)
                      ++.+++.- |..|..|.+....+- +.         +.+. .+.+|+.+.++.|.  ++..+...-|.|.++........
T Consensus       173 d~~hildf-~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~-~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~  250 (490)
T KOG1259|consen  173 DFSHVLDF-CTQLVALVVTPVKDPIDRSNIIPNRLSFNLN-AFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQ  250 (490)
T ss_pred             chHHHHHh-hhheeEEEecCCCCCCccccccccccccchH-HhhhhheeeeeccchhheeceeecCchhheeeeeccccc
Confidence            57777777 788888888765432 11         1111 22678888888876  35555666688888765543221


Q ss_pred             cccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEEecCCCC
Q 013265          239 FSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTPKVN  318 (446)
Q Consensus       239 ~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~  318 (446)
                      ..-.-+|.-...+......+-..-.+...+.....++.|+|++..+         ..+..+..-.|.++.|.++.++- .
T Consensus       251 ~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I---------~~iDESvKL~Pkir~L~lS~N~i-~  320 (490)
T KOG1259|consen  251 DVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLI---------TQIDESVKLAPKLRRLILSQNRI-R  320 (490)
T ss_pred             ccccccchhhhcCccCCCCCccCCceEEecchHhhhhhccccccch---------hhhhhhhhhccceeEEeccccce-e
Confidence            1000111111111111100000000112223445688888887322         22233445578999999998851 1


Q ss_pred             CHHHHHHHHhhCCCceEEEEEEecccccccc----cccccc------cCCCCccccccCCCcEEEEEeeecCcchHHHHH
Q 013265          319 DLIFCIALLEAAPSLYKFSLKLVSQYDYESY----ESVKTI------KDQPYLSFTELRSIRVVELLGFVGHTADFELVM  388 (446)
Q Consensus       319 ~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~----~~~~~~------p~c~~~~~~~l~~L~~v~i~~~~g~~~e~~~~~  388 (446)
                      .    +.=|+..|+|..|+++...-..+..|    |++..+      .+-+. ....+.+|..+.+.+-+  ..+++-+.
T Consensus       321 ~----v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~LS-GL~KLYSLvnLDl~~N~--Ie~ldeV~  393 (490)
T KOG1259|consen  321 T----VQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETLS-GLRKLYSLVNLDLSSNQ--IEELDEVN  393 (490)
T ss_pred             e----ehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhhh-hhHhhhhheeccccccc--hhhHHHhc
Confidence            1    11156789999999976422122222    111110      11110 11133444444443321  24555555


Q ss_pred             HHHhcCccccceEEecC
Q 013265          389 YLIFSAKLLEKIIIDPC  405 (446)
Q Consensus       389 ~ll~~a~~Le~l~i~~~  405 (446)
                      .| ++.|.||.+.+..+
T Consensus       394 ~I-G~LPCLE~l~L~~N  409 (490)
T KOG1259|consen  394 HI-GNLPCLETLRLTGN  409 (490)
T ss_pred             cc-ccccHHHHHhhcCC
Confidence            55 77888888777654

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=81.55  E-value=0.26  Score=44.67  Aligned_cols=14  Identities=43%  Similarity=0.572  Sum_probs=8.1

Q ss_pred             ECCceeEEEEcccc
Q 013265          223 HAPNLLSFEYSGPI  236 (446)
Q Consensus       223 ~~p~L~~l~~~~~~  236 (446)
                      .||+|+++.+++..
T Consensus        89 ~~P~l~~l~ls~Nk  102 (260)
T KOG2739|consen   89 KAPNLKVLNLSGNK  102 (260)
T ss_pred             hCCceeEEeecCCc
Confidence            45666666665553

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=81.30  E-value=1.6  Score=28.08  Aligned_cols=35  Identities=17%  Similarity=0.093  Sum_probs=19.1

Q ss_pred             CCcceeeEeccCCCCceeEeCCcCccceEEeeccC
Q 013265          181 PVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLD  215 (446)
Q Consensus       181 p~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~  215 (446)
                      |+|++|++.++....-...-..+++|+.|.++++.
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~   35 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP   35 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC
Confidence            56788888777433221212344667777776664

...

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=80.36  E-value=0.36  Score=46.61  Aligned_cols=38  Identities=24%  Similarity=0.274  Sum_probs=27.7

Q ss_pred             CCCCCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEEe
Q 013265          300 IPEMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLV  341 (446)
Q Consensus       300 ~~~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~  341 (446)
                      +.++.||+.|++..+    ++..+..++++|.+|++|++.+.
T Consensus       501 l~nm~nL~tLDL~nN----dlq~IPp~LgnmtnL~hLeL~gN  538 (565)
T KOG0472|consen  501 LKNMRNLTTLDLQNN----DLQQIPPILGNMTNLRHLELDGN  538 (565)
T ss_pred             hhhhhhcceeccCCC----chhhCChhhccccceeEEEecCC
Confidence            556778888887765    45667777888888888888543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	446
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	3e-09
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-07
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-06
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	1e-05
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	3e-04
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	5e-04

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 57.2 bits (138), Expect = 3e-09
 Identities = 67/343 (19%), Positives = 113/343 (32%), Gaps = 58/343 (16%)

Query: 2   RSEGDHINELPDDILVNILSRLTMKEAVRTSIISSRWRYLWRGFSGCLNFDDPFTMANSK 61
              G   + LPD++L+ I S L + E ++ S +  RW  L    S     D      +  
Sbjct: 3   NFPGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLHPD 62

Query: 62  WPHLNLKSGPINVERHKFVNWVNQVLSSLEGHCTEELRICFDVFSNHDIDNWIKFALERR 121
                L  G I     +        +           R+     SN  I+      +  +
Sbjct: 63  VTGRLLSQGVIAFRCPRS------FMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQ 116

Query: 122 VRRLELDFSRVVYNLRFVGQYTFPSHLDFYSSFRHLTDLSLTTV-GITGEVLEHLLCYCC 180
             +L+        NL   G       ++  +   +L  L+L+   G +   L+ LL   C
Sbjct: 117 CSKLQ--------NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS-SC 167

Query: 181 PVLEVLNVAESSSLTS----LKVSGPSLKLKHLKLNKL------DNLKDLQLHAPNLLSF 230
             L+ LN++     T     + V+  S  +  L L+         +L  L    PNL+  
Sbjct: 168 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVH- 226

Query: 231 EYSGPILPFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSE 290
                       +   L +  F         +        L  L  L L  C+ +I ++ 
Sbjct: 227 --------LDLSDSVMLKNDCF-----QEFFQ--------LNYLQHLSLSRCYDIIPET- 264

Query: 291 YRAGRYLHDIPEMCNLKHLEIIGTPKVNDLIFCIALLEAAPSL 333
                 L ++ E+  LK L++ G      L     L EA P L
Sbjct: 265 ------LLELGEIPTLKTLQVFGIVPDGTL---QLLKEALPHL 298

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 51.8 bits (124), Expect = 3e-07
 Identities = 54/356 (15%), Positives = 115/356 (32%), Gaps = 65/356 (18%)

Query: 8   INELPDDILVNILSRLT-MKEAVRTSIISSRWRYLWRGFSGCLNFDDPFTMANSKWP--- 63
               P+++L ++ S +   K+    S++   W  + R     +   + + ++ +      
Sbjct: 6   ALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRF 65

Query: 64  ----HLNLKSGP----INVERHKFVNWVNQVLSSLEGHCT--EELRICFDVFSNHDIDNW 113
                + LK  P     N+    +  +V   + ++    T  EE+R+   V ++  ++  
Sbjct: 66  PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLE-- 123

Query: 114 IKFALERRVRRLELDFSRVVYNLRFVGQYTFPSHLDFYSSFRHLTDLSLTTVGITGEVLE 173
               + +  +  +      V  L     ++        ++ R+L +L L    +      
Sbjct: 124 ---LIAKSFKNFK------VLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGH 174

Query: 174 HL--LCYCCPVLEVLNVAESSSLTSLKVSGPSLK--------LKHLKLNKLDNLKDLQLH 223
            L         L  LN+    S  + +VS  +L+        LK LKLN+   L+ L   
Sbjct: 175 WLSHFPDTYTSLVSLNI----SCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATL 230

Query: 224 APNLLSFEYSGPILPFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCH 283
                                P L +    G  +          S+ L     L+  +  
Sbjct: 231 LQRA-----------------PQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGF 273

Query: 284 LLIGDSEYRAGRYLHDIPEMC-NLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSL 338
                +      YL  +  +C  L  L +      +  +  + LL   P L +  +
Sbjct: 274 WDAVPA------YLPAVYSVCSRLTTLNLSYATVQSYDL--VKLLCQCPKLQRLWV 321

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.8 bits (123), Expect = 4e-07
 Identities = 79/511 (15%), Positives = 147/511 (28%), Gaps = 157/511 (30%)

Query: 2   RSEGDHINELPDDI-----LVNILSRL---TMKEAVRTSI------ISSRWRYLWRGFSG 47
           + E DHI    D +     L   L       +++ V   +      + S  +   R  S 
Sbjct: 48  KEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSM 107

Query: 48  CLNFDDPFTMANSKWPHLNLKSGPINVERHKFVNWVNQVLSSLEGHCTEELRICFDVFSN 107
                  +     +  + N      NV R +    + Q L  L                 
Sbjct: 108 ---MTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPA-------------- 150

Query: 108 HDIDNWI---------KFALERRVRRLELDFSRVVYNLRFVGQYTFPSHLDFYSSFRHLT 158
                 +         K  +   V      +           Q      + F+       
Sbjct: 151 ----KNVLIDGVLGSGKTWVALDVCL---SYKV---------QCKMDFKI-FW------- 186

Query: 159 DLSLTTVGITGEVLEHL--LCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDN 216
            L+L        VLE L  L Y    ++    + S   +++K+   S++       +L  
Sbjct: 187 -LNLKNCNSPETVLEMLQKLLY---QIDPNWTSRSDHSSNIKLRIHSIQ------AELRR 236

Query: 217 LKDLQLHAPNLLSFEYSGPILPFSFRNV--PNLVDASF-WGCFSAYIAKNLC---QHSI- 269
           L   + +   LL       +L     NV      +A F   C      K L       + 
Sbjct: 237 LLKSKPYENCLL-------VL----LNVQNAKAWNA-FNLSC------KILLTTRFKQVT 278

Query: 270 -FLVQLHTLKLDTCHLLIG--DSEYRA--GRYLH----DIP-EMC--NLKHLEIIGTPKV 317
            FL    T  +   H  +     E ++   +YL     D+P E+   N + L II     
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA---- 334

Query: 318 NDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTIKDQPY--LSFTELR-------- 367
                    +    + +         + + + + + TI +     L   E R        
Sbjct: 335 -------ESIRDGLATWDN-------WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV 380

Query: 368 -------SIRVVELLGFVGHTADFELVMYLIFSAKLLEKIIIDPCPTWRVGTPA-ELIWR 419
                     ++ L+ F    +D  +V+  +    L+EK    P  +  +  P+  L  +
Sbjct: 381 FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK---QPKES-TISIPSIYLELK 436

Query: 420 ETAEYQSARRR----AFELAAKFPLWEFVIP 446
              E + A  R     + +   F   + + P
Sbjct: 437 VKLENEYALHRSIVDHYNIPKTFDSDDLIPP 467

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 48.8 bits (116), Expect = 3e-06
 Identities = 59/365 (16%), Positives = 106/365 (29%), Gaps = 55/365 (15%)

Query: 7   HINELPDDILVNILSRLT-MKEAVRTSIISSRWRYLWRGFSGCLNFDDPFTMAN----SK 61
                 DD++  +++ +T  K+    S++  RW  +       +     +T        +
Sbjct: 12  SCVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDRLSRR 71

Query: 62  WP---HLNLKSGP----INVERHKFVNWVNQVLSSLEGHCTEELRICFDVFSNHDID-NW 113
           +P    L LK  P     N+    +  +V   ++ +  +  +   + F      D+D + 
Sbjct: 72  FPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDR 131

Query: 114 IKFALERRVRRLELDFSRVV--YNLRFVGQY-TFPSHLDF-YSSFRHLTDLSLTTVGITG 169
           +  A    +  L+LD         L  +  +      L    SSF       L  +    
Sbjct: 132 LAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHN 191

Query: 170 EVLEHLLCYC-----------------CPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLN 212
             LE L  Y                  C  L  + V +   L  +     +  L+     
Sbjct: 192 TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGG 251

Query: 213 KLDNLKDLQLHAPNL--------LSFEYSGPI-LPFSFRNVPNLVDASFWGCFSAYIAKN 263
            L+    +     NL        L   Y GP  +P  F     +              ++
Sbjct: 252 SLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALL--ETED 309

Query: 264 LCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMC-NLKHLEIIGTPKVNDLIF 322
            C        L  L+       IGD        L  + + C  LK L I        +  
Sbjct: 310 HCTLIQKCPNLEVLETRNV---IGDRG------LEVLAQYCKQLKRLRIERGADEQGMED 360

Query: 323 CIALL 327
              L+
Sbjct: 361 EEGLV 365

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53

 Score = 41.8 bits (99), Expect = 1e-05
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 6/48 (12%)

Query: 2  RSEGDHINELPDDILVNILSRLTMKEAVRTSIISSRWRY------LWR 43
             G   + LPD++L+ I S L + E ++ S +  RW        LW+
Sbjct: 3  NFPGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQ 50

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Length = 297

 Score = 41.5 bits (96), Expect = 3e-04
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 4  EGDHINELPDDILVNILSRLTMKEAVRT-SIISSRWRYLWRGFS 46
            +++ ELP+ +L+ +L+ L   E V+   ++  RW+ L  G  
Sbjct: 47 AVEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAP 90

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312

 Score = 40.9 bits (95), Expect = 5e-04
 Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 15/73 (20%)

Query: 5  GDHINELPDDILVNILSRLTMKEAVRTSIISSRWRY------LWRGFSGCLNFDDPFTMA 58
             +  LP D+ + ILS L+  +  +    +  W        LWR F   L  D P    
Sbjct: 2  ASTLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYF---LLRDLP---- 54

Query: 59 NSKWPHLNLKSGP 71
             W  ++ KS P
Sbjct: 55 --SWSSVDWKSLP 65

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	446
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.84
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.82
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.78
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.99
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.97
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.77
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.76
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	98.74
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	98.74
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.73
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.67
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.66
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.64
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.62
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.62
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.58
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.55
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.52
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.51
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.51
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	98.51
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.5
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.49
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.49
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.48
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.47
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.47
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.46
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.45
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.44
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.4
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.4
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.39
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.39
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.39
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.39
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.39
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.38
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.38
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.38
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.38
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.36
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.36
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.36
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.35
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.35
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.34
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.33
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.33
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.31
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.28
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.27
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.25
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.25
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.25
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.24
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.23
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.22
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.22
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.22
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.21
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.2
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.2
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	98.2
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.19
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.18
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.18
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.15
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.15
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.13
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.1
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.1
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.1
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.03
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.02
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.01
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.0
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	97.99
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	97.93
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	97.92
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	97.92
3m19_A	251	Variable lymphocyte receptor A diversity region; a	97.92
3m19_A	251	Variable lymphocyte receptor A diversity region; a	97.91
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	97.91
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	97.89
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	97.88
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	97.87
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	97.87
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	97.86
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	97.85
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	97.84
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	97.83
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	97.8
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	97.78
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.78
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	97.76
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.71
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	97.68
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	97.68
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.65
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	97.57
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	97.5
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.47
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	97.45
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	97.43
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	97.42
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	97.42
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	97.41
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	97.39
3e6j_A	229	Variable lymphocyte receptor diversity region; var	97.39
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	97.38
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	97.37
3e6j_A	229	Variable lymphocyte receptor diversity region; var	97.24
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.24
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	97.24
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	97.19
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.15
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.14
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.14
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	97.05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	96.98
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	96.95
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	96.88
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	96.79
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	96.77
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	96.74
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	96.67
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	96.6
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	96.59
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	96.56
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	96.54
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	96.41
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	96.33
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	96.23
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	96.19
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	96.04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	96.04
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	95.98
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	95.57
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	95.5
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	95.2
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	95.09
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	94.95
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	94.75
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	94.59
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	92.63
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	91.74
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	89.8
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	89.64
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	88.39
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	82.77
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	81.04

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.84  E-value=1.9e-21  Score=201.45  Aligned_cols=212  Identities=17%  Similarity=0.240  Sum_probs=129.1

Q ss_pred             cCCcCCCCChHHHHHHHhCCC-hhHHHHHhhccchhhhhcccccceEEecCCCCCCCCCCccccCCCCCchhhHhHHHHH
Q 013265            4 EGDHINELPDDILVNILSRLT-MKEAVRTSIISSRWRYLWRGFSGCLNFDDPFTMANSKWPHLNLKSGPINVERHKFVNW   82 (446)
Q Consensus         4 ~~D~is~LPd~iL~~ILs~Lp-~kd~~rts~lSkrWr~lw~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (446)
                      ..|+++.||||||.+||++|| .+|+++++.|||||+++.......+++.......                 ..     
T Consensus         2 ~~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~-----------------~~-----   59 (594)
T 2p1m_B            2 QKRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVS-----------------PA-----   59 (594)
T ss_dssp             --------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSSC-----------------HH-----
T ss_pred             cccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeeccccccC-----------------HH-----
Confidence            359999999999999999999 9999999999999998732123355554321110                 11     


Q ss_pred             HHHHHHhccCCCcceEEEEEecCC----------cchHHHHHHHHHH--cCCcEEEEeeeccccccccccccccccccCC
Q 013265           83 VNQVLSSLEGHCTEELRICFDVFS----------NHDIDNWIKFALE--RRVRRLELDFSRVVYNLRFVGQYTFPSHLDF  150 (446)
Q Consensus        83 v~~~L~~~~~~~l~~l~l~~~~~~----------~~~~~~wi~~~~~--~~l~~L~l~~~~~~~~~~~~~~~~lp~~~~~  150 (446)
                        ..+.+.  +.++++.+......          ...+..|+.....  +++++|.+.......        ..+..+  
T Consensus        60 --~~~~~~--~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~--------~~~~~l--  125 (594)
T 2p1m_B           60 --TVIRRF--PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTD--------DCLELI--  125 (594)
T ss_dssp             --HHHHHC--TTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCH--------HHHHHH--
T ss_pred             --HHHhhC--CCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcH--------HHHHHH--
Confidence              122222  34888888763211          0245678887654  389999886432110        001011  


Q ss_pred             ccccccccceEEEEE-EeChHHHHHHHhcCCCCcceeeEeccCCC----Cce-eEeCCcCccceEEeeccC-CC-----C
Q 013265          151 YSSFRHLTDLSLTTV-GITGEVLEHLLCYCCPVLEVLNVAESSSL----TSL-KVSGPSLKLKHLKLNKLD-NL-----K  218 (446)
Q Consensus       151 ~~~~~~L~~L~L~~~-~~~~~~l~~ll~~~cp~Le~L~L~~c~~~----~~~-~i~~~~~~L~~L~i~~~~-~l-----~  218 (446)
                      ..++++|++|+|.++ .+++..+..+..+ ||+|++|++.+|...    ..+ .+...+++|++|.+.+|. .+     .
T Consensus       126 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~-~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~  204 (594)
T 2p1m_B          126 AKSFKNFKVLVLSSCEGFSTDGLAAIAAT-CRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALE  204 (594)
T ss_dssp             HHHCTTCCEEEEESCEEEEHHHHHHHHHH-CTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHH
T ss_pred             HHhCCCCcEEeCCCcCCCCHHHHHHHHHh-CCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHH
Confidence            125789999999998 5787788888899 999999999988611    111 233355789999998875 11     1


Q ss_pred             eEEEECCceeEEEEcccc----cccccCCCCCcceEEe
Q 013265          219 DLQLHAPNLLSFEYSGPI----LPFSFRNVPNLVDASF  252 (446)
Q Consensus       219 ~~~i~~p~L~~l~~~~~~----~~~~~~~~~~L~~l~l  252 (446)
                      .+...+|+|++|++.++.    .+..+.++++|+++.+
T Consensus       205 ~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l  242 (594)
T 2p1m_B          205 RLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGT  242 (594)
T ss_dssp             HHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEEC
T ss_pred             HHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEccc
Confidence            222236888888887652    1122334555666554

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.82  E-value=9.7e-20  Score=188.59  Aligned_cols=43  Identities=16%  Similarity=0.335  Sum_probs=32.3

Q ss_pred             CCC-cCCcCC----CCChHHHHHHHhCC-ChhHHHHHhhccchhhhhcc
Q 013265            1 MRS-EGDHIN----ELPDDILVNILSRL-TMKEAVRTSIISSRWRYLWR   43 (446)
Q Consensus         1 ~~~-~~D~is----~LPd~iL~~ILs~L-p~kd~~rts~lSkrWr~lw~   43 (446)
                      |+. +.||++    .||||++.+||++| +++|++++++|||||++++.
T Consensus         1 m~~~~~~r~~~~~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~   49 (592)
T 3ogk_B            1 MEDPDIKRCKLSCVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDS   49 (592)
T ss_dssp             -----------CCCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHH
T ss_pred             CCChhhhhHhhccCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhh
Confidence            443 357877    89999999999999 89999999999999999854

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.78  E-value=1.9e-19  Score=173.02  Aligned_cols=147  Identities=19%  Similarity=0.192  Sum_probs=98.3

Q ss_pred             CCcCCCCChHHHHHHHhCCChhHHHHHhhccchhhhhcc--cccceEEecCCCCCCCCCCccccCCCCCchhhHhHHHHH
Q 013265            5 GDHINELPDDILVNILSRLTMKEAVRTSIISSRWRYLWR--GFSGCLNFDDPFTMANSKWPHLNLKSGPINVERHKFVNW   82 (446)
Q Consensus         5 ~D~is~LPd~iL~~ILs~Lp~kd~~rts~lSkrWr~lw~--~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (446)
                      ...+++||||++.+||++|+.+|+++++.|||||+++..  +....+++....+.                         
T Consensus         6 ~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~~~~-------------------------   60 (336)
T 2ast_B            6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLH-------------------------   60 (336)
T ss_dssp             -CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECTTCBCC-------------------------
T ss_pred             cCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeeccccccCC-------------------------
Confidence            456899999999999999999999999999999999853  02335555443221                         


Q ss_pred             HHHHHHhccCCCcceEEEEEecCCcchHHHHHHHHHHcCCcEEEEeeeccccccccccccccccccCCccccccccceEE
Q 013265           83 VNQVLSSLEGHCTEELRICFDVFSNHDIDNWIKFALERRVRRLELDFSRVVYNLRFVGQYTFPSHLDFYSSFRHLTDLSL  162 (446)
Q Consensus        83 v~~~L~~~~~~~l~~l~l~~~~~~~~~~~~wi~~~~~~~l~~L~l~~~~~~~~~~~~~~~~lp~~~~~~~~~~~L~~L~L  162 (446)
                                                  ...+......+++.+.+.....         ...+.   ....+++|++|+|
T Consensus        61 ----------------------------~~~~~~~~~~~l~~L~l~~n~l---------~~~~~---~~~~~~~L~~L~L  100 (336)
T 2ast_B           61 ----------------------------PDVTGRLLSQGVIAFRCPRSFM---------DQPLA---EHFSPFRVQHMDL  100 (336)
T ss_dssp             ----------------------------HHHHHHHHHTTCSEEECTTCEE---------CSCCC---SCCCCBCCCEEEC
T ss_pred             ----------------------------HHHHHhhhhccceEEEcCCccc---------cccch---hhccCCCCCEEEc
Confidence                                        1112222334566665532210         01111   1336899999999


Q ss_pred             EEEEeChHHHHHHHhcCCCCcceeeEeccCCCCc-eeEeCCcCccceEEeeccCCC
Q 013265          163 TTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTS-LKVSGPSLKLKHLKLNKLDNL  217 (446)
Q Consensus       163 ~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~-~~i~~~~~~L~~L~i~~~~~l  217 (446)
                      +++.+++..+..++.. ||+|++|++.+|..... ...-..+++|++|.+.+|..+
T Consensus       101 ~~~~l~~~~~~~~~~~-~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l  155 (336)
T 2ast_B          101 SNSVIEVSTLHGILSQ-CSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGF  155 (336)
T ss_dssp             TTCEECHHHHHHHHTT-BCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSC
T ss_pred             cCCCcCHHHHHHHHhh-CCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCC
Confidence            9999988878888999 99999999999863321 111223577888888877433

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.05  E-value=1.7e-10  Score=110.09  Aligned_cols=190  Identities=22%  Similarity=0.205  Sum_probs=114.8

Q ss_pred             cCCcEEEEeeeccccccccccccccccccCCccccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeE
Q 013265          120 RRVRRLELDFSRVVYNLRFVGQYTFPSHLDFYSSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKV  199 (446)
Q Consensus       120 ~~l~~L~l~~~~~~~~~~~~~~~~lp~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i  199 (446)
                      .++++|.+....         .-.+|..+   ..+++|++|+|.+..++  .+...+.. +++|++|++.++........
T Consensus        81 ~~l~~L~L~~n~---------l~~lp~~l---~~l~~L~~L~L~~n~l~--~lp~~~~~-l~~L~~L~Ls~n~l~~lp~~  145 (328)
T 4fcg_A           81 PGRVALELRSVP---------LPQFPDQA---FRLSHLQHMTIDAAGLM--ELPDTMQQ-FAGLETLTLARNPLRALPAS  145 (328)
T ss_dssp             TTCCEEEEESSC---------CSSCCSCG---GGGTTCSEEEEESSCCC--CCCSCGGG-GTTCSEEEEESCCCCCCCGG
T ss_pred             cceeEEEccCCC---------chhcChhh---hhCCCCCEEECCCCCcc--chhHHHhc-cCCCCEEECCCCccccCcHH
Confidence            577777775432         12455443   35788888888887766  23333567 88888888888754422211


Q ss_pred             eCCcCccceEEeeccCCCCeEE------------EECCceeEEEEcccc---cccccCCCCCcceEEecccchhhhhhhh
Q 013265          200 SGPSLKLKHLKLNKLDNLKDLQ------------LHAPNLLSFEYSGPI---LPFSFRNVPNLVDASFWGCFSAYIAKNL  264 (446)
Q Consensus       200 ~~~~~~L~~L~i~~~~~l~~~~------------i~~p~L~~l~~~~~~---~~~~~~~~~~L~~l~l~~~~~~~~~~~l  264 (446)
                      ...+++|++|.+.+|..+..+.            -..++|++|++.++.   .+..+.++++|+.+++..+.+..    +
T Consensus       146 l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~----l  221 (328)
T 4fcg_A          146 IASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA----L  221 (328)
T ss_dssp             GGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC----C
T ss_pred             HhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc----C
Confidence            2244678888888875433221            136778888777663   23446677788888887654332    1


Q ss_pred             hhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEE
Q 013265          265 CQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLK  339 (446)
Q Consensus       265 ~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~  339 (446)
                      ...+..+++|+.|++.++.+.        ...+..+..+++|++|+|..+.....+   ..-+..+++|+.|+|.
T Consensus       222 ~~~l~~l~~L~~L~Ls~n~~~--------~~~p~~~~~l~~L~~L~L~~n~~~~~~---p~~~~~l~~L~~L~L~  285 (328)
T 4fcg_A          222 GPAIHHLPKLEELDLRGCTAL--------RNYPPIFGGRAPLKRLILKDCSNLLTL---PLDIHRLTQLEKLDLR  285 (328)
T ss_dssp             CGGGGGCTTCCEEECTTCTTC--------CBCCCCTTCCCCCCEEECTTCTTCCBC---CTTGGGCTTCCEEECT
T ss_pred             chhhccCCCCCEEECcCCcch--------hhhHHHhcCCCCCCEEECCCCCchhhc---chhhhcCCCCCEEeCC
Confidence            133567778888888764221        233445666778888888776422221   1125677788888774

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.99  E-value=1.7e-10  Score=119.08  Aligned_cols=126  Identities=21%  Similarity=0.244  Sum_probs=89.7

Q ss_pred             cccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCc--e-eEeCCcCccceEEeeccC--C-----CCeEE
Q 013265          152 SSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTS--L-KVSGPSLKLKHLKLNKLD--N-----LKDLQ  221 (446)
Q Consensus       152 ~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~--~-~i~~~~~~L~~L~i~~~~--~-----l~~~~  221 (446)
                      ..+++|++|+|+++.+++..+..+... ||+|++|++.+|..+..  + .+...+++|++|.+.+|.  .     +..+.
T Consensus       102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~-~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~  180 (594)
T 2p1m_B          102 SSYTWLEEIRLKRMVVTDDCLELIAKS-FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP  180 (594)
T ss_dssp             HHCTTCCEEEEESCBCCHHHHHHHHHH-CTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC
T ss_pred             HhCCCCCeEEeeCcEEcHHHHHHHHHh-CCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh
Confidence            468899999999999999888888778 99999999999975543  2 233356899999999886  0     12222


Q ss_pred             EECCceeEEEEcccc--cc-----cccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEee
Q 013265          222 LHAPNLLSFEYSGPI--LP-----FSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDT  281 (446)
Q Consensus       222 i~~p~L~~l~~~~~~--~~-----~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~  281 (446)
                      -.+++|++|++.++.  ..     ....++++|+.+++..+..   ...+..++..+++|+.|.+..
T Consensus       181 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~---~~~l~~~~~~~~~L~~L~l~~  244 (594)
T 2p1m_B          181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVP---LEKLATLLQRAPQLEELGTGG  244 (594)
T ss_dssp             TTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSC---HHHHHHHHHHCTTCSEEECSB
T ss_pred             hcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCc---HHHHHHHHhcCCcceEccccc
Confidence            256799999998774  11     1234579999999987621   111335666777777776544

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.97  E-value=2.2e-10  Score=118.26  Aligned_cols=278  Identities=14%  Similarity=0.059  Sum_probs=160.9

Q ss_pred             cceEEEEEecC----------CcchHHHHHHHHHH--cCCcEEEEeeeccccccccccccccccccCCcccccc-ccceE
Q 013265           95 TEELRICFDVF----------SNHDIDNWIKFALE--RRVRRLELDFSRVVYNLRFVGQYTFPSHLDFYSSFRH-LTDLS  161 (446)
Q Consensus        95 l~~l~l~~~~~----------~~~~~~~wi~~~~~--~~l~~L~l~~~~~~~~~~~~~~~~lp~~~~~~~~~~~-L~~L~  161 (446)
                      ++++.+.....          .......|+.....  +++++|++.......        ..+..+  ...++. |++|+
T Consensus        75 L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~--------~~~~~l--~~~~~~~L~~L~  144 (592)
T 3ogk_B           75 LRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSD--------LDLDRL--AKARADDLETLK  144 (592)
T ss_dssp             CSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCH--------HHHHHH--HHHHGGGCCEEE
T ss_pred             CeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecH--------HHHHHH--HHhccccCcEEE
Confidence            88888865211          11245667776653  488988886432110        000000  112455 99999


Q ss_pred             EEEEE-eChHHHHHHHhcCCCCcceeeEeccCCCCc----e-eEeCCcCccceEEeeccCCCC--------eEEEECCce
Q 013265          162 LTTVG-ITGEVLEHLLCYCCPVLEVLNVAESSSLTS----L-KVSGPSLKLKHLKLNKLDNLK--------DLQLHAPNL  227 (446)
Q Consensus       162 L~~~~-~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~----~-~i~~~~~~L~~L~i~~~~~l~--------~~~i~~p~L  227 (446)
                      |.++. +++..+..+..+ ||+|++|+|.+|.....    + .+...+++|++|.+.++. +.        .+...+|+|
T Consensus       145 L~~~~~~~~~~l~~~~~~-~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~-~~~~~~~~l~~~~~~~~~L  222 (592)
T 3ogk_B          145 LDKCSGFTTDGLLSIVTH-CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTE-FAKISPKDLETIARNCRSL  222 (592)
T ss_dssp             EESCEEEEHHHHHHHHHH-CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCC-CSSCCHHHHHHHHHHCTTC
T ss_pred             CcCCCCcCHHHHHHHHhh-CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccC-CCccCHHHHHHHHhhCCCC
Confidence            99877 677788888889 99999999998852111    1 122345789999997765 22        112256999


Q ss_pred             eEEEEccccc---ccccCCCCCcceEEecccchh-----------------------hhhhhhhhhhccCCCceEEEEee
Q 013265          228 LSFEYSGPIL---PFSFRNVPNLVDASFWGCFSA-----------------------YIAKNLCQHSIFLVQLHTLKLDT  281 (446)
Q Consensus       228 ~~l~~~~~~~---~~~~~~~~~L~~l~l~~~~~~-----------------------~~~~~l~~~l~~l~~l~~L~L~~  281 (446)
                      ++|++.++..   +..+.++++|+++.+......                       .....+..++..+++|++|++.+
T Consensus       223 ~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~  302 (592)
T 3ogk_B          223 VSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLY  302 (592)
T ss_dssp             CEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETT
T ss_pred             cEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCC
Confidence            9999988742   334567889999988532100                       00112234556667777777776


Q ss_pred             cccccccchhcccccccCCCCCCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEE-ecc------ccccccccccc
Q 013265          282 CHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKL-VSQ------YDYESYESVKT  354 (446)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~-~~~------~~~~~~~~~~~  354 (446)
                      +.+.       ...+...+..+++|++|.+..+.   ...++..+.++||+|++|++.. ...      +.......+..
T Consensus       303 ~~l~-------~~~~~~~~~~~~~L~~L~L~~~~---~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~  372 (592)
T 3ogk_B          303 ALLE-------TEDHCTLIQKCPNLEVLETRNVI---GDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIA  372 (592)
T ss_dssp             CCCC-------HHHHHHHHTTCTTCCEEEEEGGG---HHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHH
T ss_pred             CcCC-------HHHHHHHHHhCcCCCEEeccCcc---CHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHH
Confidence            4321       11111224567788888887331   2235666777888888888862 000      11011111111


Q ss_pred             ccCCCCccccccCCCcEEEEEeeecCcchHHHHHHHHhcCccccceEEec
Q 013265          355 IKDQPYLSFTELRSIRVVELLGFVGHTADFELVMYLIFSAKLLEKIIIDP  404 (446)
Q Consensus       355 ~p~c~~~~~~~l~~L~~v~i~~~~g~~~e~~~~~~ll~~a~~Le~l~i~~  404 (446)
                      +..       .|.+|+++.+.+ .....  ..+..+..+.+.|+.+.+..
T Consensus       373 l~~-------~~~~L~~L~l~~-~~l~~--~~~~~l~~~~~~L~~L~l~~  412 (592)
T 3ogk_B          373 LAQ-------GCQELEYMAVYV-SDITN--ESLESIGTYLKNLCDFRLVL  412 (592)
T ss_dssp             HHH-------HCTTCSEEEEEE-SCCCH--HHHHHHHHHCCSCCEEEEEE
T ss_pred             HHh-------hCccCeEEEeec-CCccH--HHHHHHHhhCCCCcEEEEee
Confidence            111       237899999843 22222  34555667789999999974

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.77  E-value=4.1e-08  Score=94.40  Aligned_cols=222  Identities=16%  Similarity=0.140  Sum_probs=142.6

Q ss_pred             ccccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCcee--EeCCcCccceEEeeccCCCCeEEE----EC
Q 013265          151 YSSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLK--VSGPSLKLKHLKLNKLDNLKDLQL----HA  224 (446)
Q Consensus       151 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~--i~~~~~~L~~L~i~~~~~l~~~~i----~~  224 (446)
                      ..++++|++|+|++..+++- ....+.. +++|++|++.++.......  ....+++|++|.+.++..+..+..    ..
T Consensus        96 ~~~l~~L~~L~Ls~n~l~~~-~~~~~~~-l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l  173 (353)
T 2z80_A           96 FSSLGSLEHLDLSYNYLSNL-SSSWFKP-LSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGL  173 (353)
T ss_dssp             TTTCTTCCEEECCSSCCSSC-CHHHHTT-CTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTC
T ss_pred             cCCCCCCCEEECCCCcCCcC-CHhHhCC-CccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCC
Confidence            34678999999998887642 2234678 9999999999875433222  233458999999999854555421    24


Q ss_pred             CceeEEEEccccc----ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCC
Q 013265          225 PNLLSFEYSGPIL----PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDI  300 (446)
Q Consensus       225 p~L~~l~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~  300 (446)
                      ++|+.|++.++..    +..+.++++|+++++..+.......   .+...+++++.|++.++.+...    .... ....
T Consensus       174 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~---~~~~~~~~L~~L~L~~n~l~~~----~~~~-l~~~  245 (353)
T 2z80_A          174 TFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLE---IFVDVTSSVECLELRDTDLDTF----HFSE-LSTG  245 (353)
T ss_dssp             CEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHH---HHHHHTTTEEEEEEESCBCTTC----CCC------
T ss_pred             CCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchh---hhhhhcccccEEECCCCccccc----cccc-cccc
Confidence            7899999887643    4467788999999998765433222   4556789999999998544211    1001 1112


Q ss_pred             CCCCcccEEEEEecC-CCCCHHHHHHHHhhCCCceEEEEEEecccccccccccccccCCCCccccccCCCcEEEEEe--e
Q 013265          301 PEMCNLKHLEIIGTP-KVNDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTIKDQPYLSFTELRSIRVVELLG--F  377 (446)
Q Consensus       301 ~~~~~L~~L~L~~~~-~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~p~c~~~~~~~l~~L~~v~i~~--~  377 (446)
                      .....++.+.+.... ....+..+...+..+++|+.|++...         .+..+|...   +..+.+|+++.+.+  +
T Consensus       246 ~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N---------~l~~i~~~~---~~~l~~L~~L~L~~N~~  313 (353)
T 2z80_A          246 ETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN---------QLKSVPDGI---FDRLTSLQKIWLHTNPW  313 (353)
T ss_dssp             -CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS---------CCCCCCTTT---TTTCTTCCEEECCSSCB
T ss_pred             cccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC---------CCCccCHHH---HhcCCCCCEEEeeCCCc
Confidence            345678888888774 22333456667889999999999532         222334321   12458899999987  4


Q ss_pred             ecCcchHHHHHHHHhcC
Q 013265          378 VGHTADFELVMYLIFSA  394 (446)
Q Consensus       378 ~g~~~e~~~~~~ll~~a  394 (446)
                      .+....+..+...+.+.
T Consensus       314 ~~~~~~l~~l~~~~~~~  330 (353)
T 2z80_A          314 DCSCPRIDYLSRWLNKN  330 (353)
T ss_dssp             CCCHHHHHHHHHHHHHT
T ss_pred             cCcCCCcHHHHHHHHhc
Confidence            55555565555444443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.76  E-value=1.2e-09  Score=106.49  Aligned_cols=239  Identities=17%  Similarity=0.125  Sum_probs=129.5

Q ss_pred             cccccccceEEEEEEeC---h---H---HHHHHHhcCCCCcceeeEeccCCCCc----e-eEeCCcCccceEEeeccCCC
Q 013265          152 SSFRHLTDLSLTTVGIT---G---E---VLEHLLCYCCPVLEVLNVAESSSLTS----L-KVSGPSLKLKHLKLNKLDNL  217 (446)
Q Consensus       152 ~~~~~L~~L~L~~~~~~---~---~---~l~~ll~~~cp~Le~L~L~~c~~~~~----~-~i~~~~~~L~~L~i~~~~~l  217 (446)
                      ..+++|++|+|+++.+.   +   .   .+...+.. +++|++|+|.++.....    + ..-..+++|++|.+.+|. +
T Consensus        57 ~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~-~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l  134 (386)
T 2ca6_A           57 ASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLK-CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG-L  134 (386)
T ss_dssp             TTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTT-CTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC-C
T ss_pred             HhCCCccEEeCcccccCccccchhHHHHHHHHHHhh-CCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC-C
Confidence            35788888888876432   1   1   23344567 88888888888764331    1 111234788888888876 3


Q ss_pred             CeEE---E-EC-------------CceeEEEEcccccc--------cccCCCCCcceEEecccchhh-hhhhhhh-hhcc
Q 013265          218 KDLQ---L-HA-------------PNLLSFEYSGPILP--------FSFRNVPNLVDASFWGCFSAY-IAKNLCQ-HSIF  270 (446)
Q Consensus       218 ~~~~---i-~~-------------p~L~~l~~~~~~~~--------~~~~~~~~L~~l~l~~~~~~~-~~~~l~~-~l~~  270 (446)
                      ....   + .+             ++|++|.+.++...        -.+.++++|+.+++..+.+.. ....+.. .+..
T Consensus       135 ~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~  214 (386)
T 2ca6_A          135 GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAY  214 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGG
T ss_pred             CHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhc
Confidence            2110   0 11             78888888776432        134467788888887664331 1111223 5667


Q ss_pred             CCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEEecC-CCCCHHHHHHHHhh--CCCceEEEEEEecccccc
Q 013265          271 LVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTP-KVNDLIFCIALLEA--APSLYKFSLKLVSQYDYE  347 (446)
Q Consensus       271 l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~-~~~~~~~l~~ll~~--~p~L~~L~l~~~~~~~~~  347 (446)
                      +++|+.|.|+++.+.    ......++..+..+++|++|.|..+. .......+...++.  +|+|+.|+|..+   ...
T Consensus       215 ~~~L~~L~Ls~n~l~----~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n---~i~  287 (386)
T 2ca6_A          215 CQELKVLDLQDNTFT----HLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYN---EIE  287 (386)
T ss_dssp             CTTCCEEECCSSCCH----HHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSS---CCB
T ss_pred             CCCccEEECcCCCCC----cHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCC---cCC
Confidence            888888888875331    00112233445667888888887774 21122234455544  788888888432   222


Q ss_pred             cccccccccCCCCccccccCCCcEEEEEeeecCcchHHHHHHHHhcCccccceEEec
Q 013265          348 SYESVKTIKDQPYLSFTELRSIRVVELLGFVGHTADFELVMYLIFSAKLLEKIIIDP  404 (446)
Q Consensus       348 ~~~~~~~~p~c~~~~~~~l~~L~~v~i~~~~g~~~e~~~~~~ll~~a~~Le~l~i~~  404 (446)
                      ..+ ...+|...   +.++.+|+++.+.+..-+... .++..+.+..+.++...+.-
T Consensus       288 ~~g-~~~l~~~l---~~~l~~L~~L~l~~N~l~~~~-~~~~~l~~~l~~~~~~~l~~  339 (386)
T 2ca6_A          288 LDA-VRTLKTVI---DEKMPDLLFLELNGNRFSEED-DVVDEIREVFSTRGRGELDE  339 (386)
T ss_dssp             HHH-HHHHHHHH---HHHCTTCCEEECTTSBSCTTS-HHHHHHHHHHHHHTCCEECC
T ss_pred             HHH-HHHHHHHH---HhcCCCceEEEccCCcCCcch-hHHHHHHHHhhhcCcchhhh
Confidence            111 11122211   012377888888764322222 22333333445555555443

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=98.74  E-value=6e-09  Score=70.34  Aligned_cols=40  Identities=33%  Similarity=0.556  Sum_probs=33.8

Q ss_pred             cCCcCCCCChHHHHHHHhCCChhHHHHHhhccchhhhhcc
Q 013265            4 EGDHINELPDDILVNILSRLTMKEAVRTSIISSRWRYLWR   43 (446)
Q Consensus         4 ~~D~is~LPd~iL~~ILs~Lp~kd~~rts~lSkrWr~lw~   43 (446)
                      ..+.++.||+|++.+||++||.+|.++++.|||+|+.+..
T Consensus         5 ~~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~   44 (53)
T 1fs1_A            5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS   44 (53)
T ss_dssp             ----CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHT
T ss_pred             CCCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence            4577999999999999999999999999999999997643

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=98.74  E-value=7.4e-09  Score=98.64  Aligned_cols=222  Identities=17%  Similarity=0.197  Sum_probs=147.5

Q ss_pred             HHHHHhccCCCcceEEEEEecCCcchHHHHHHHHHHcCCcEEEEeeeccccccccccccccccccCCccccccccceEEE
Q 013265           84 NQVLSSLEGHCTEELRICFDVFSNHDIDNWIKFALERRVRRLELDFSRVVYNLRFVGQYTFPSHLDFYSSFRHLTDLSLT  163 (446)
Q Consensus        84 ~~~L~~~~~~~l~~l~l~~~~~~~~~~~~wi~~~~~~~l~~L~l~~~~~~~~~~~~~~~~lp~~~~~~~~~~~L~~L~L~  163 (446)
                      ...+.......++.+.+....-.  .+...+..  -.+++.|.+.....         ..+|..   ...+++|++|+|+
T Consensus        72 ~~~l~~~~~~~l~~L~L~~n~l~--~lp~~l~~--l~~L~~L~L~~n~l---------~~lp~~---~~~l~~L~~L~Ls  135 (328)
T 4fcg_A           72 ADLLEDATQPGRVALELRSVPLP--QFPDQAFR--LSHLQHMTIDAAGL---------MELPDT---MQQFAGLETLTLA  135 (328)
T ss_dssp             HHHHHHHTSTTCCEEEEESSCCS--SCCSCGGG--GTTCSEEEEESSCC---------CCCCSC---GGGGTTCSEEEEE
T ss_pred             HHHHhcccccceeEEEccCCCch--hcChhhhh--CCCCCEEECCCCCc---------cchhHH---HhccCCCCEEECC
Confidence            33343333344888888643211  11111111  34799888865431         145543   3578999999999


Q ss_pred             EEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeEe----------CCcCccceEEeeccCCCCeEE---EECCceeEE
Q 013265          164 TVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVS----------GPSLKLKHLKLNKLDNLKDLQ---LHAPNLLSF  230 (446)
Q Consensus       164 ~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~----------~~~~~L~~L~i~~~~~l~~~~---i~~p~L~~l  230 (446)
                      ++.++  .+..-+.. +++|+.|++.+|...+.+...          ..+++|++|.+.++. +..+.   -..++|++|
T Consensus       136 ~n~l~--~lp~~l~~-l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L  211 (328)
T 4fcg_A          136 RNPLR--ALPASIAS-LNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSL  211 (328)
T ss_dssp             SCCCC--CCCGGGGG-CTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEE
T ss_pred             CCccc--cCcHHHhc-CcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEE
Confidence            98877  33334778 999999999998766544211          124899999999986 44332   135899999


Q ss_pred             EEccccc---ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCccc
Q 013265          231 EYSGPIL---PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLK  307 (446)
Q Consensus       231 ~~~~~~~---~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~  307 (446)
                      ++.++..   +..+.++++|+.+++..+.......   ..+..+++|+.|++.++..        ...++..+..+++|+
T Consensus       212 ~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p---~~~~~l~~L~~L~L~~n~~--------~~~~p~~~~~l~~L~  280 (328)
T 4fcg_A          212 KIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYP---PIFGGRAPLKRLILKDCSN--------LLTLPLDIHRLTQLE  280 (328)
T ss_dssp             EEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCC---CCTTCCCCCCEEECTTCTT--------CCBCCTTGGGCTTCC
T ss_pred             EccCCCCCcCchhhccCCCCCEEECcCCcchhhhH---HHhcCCCCCCEEECCCCCc--------hhhcchhhhcCCCCC
Confidence            9998743   3457789999999998763322222   4567889999999988532        123455667889999


Q ss_pred             EEEEEecCCCCCHHHHHHHHhhCCCceEEEEE
Q 013265          308 HLEIIGTPKVNDLIFCIALLEAAPSLYKFSLK  339 (446)
Q Consensus       308 ~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~  339 (446)
                      +|+|..+.....   +..-+.+.|+|+.+.+.
T Consensus       281 ~L~L~~n~~~~~---iP~~l~~L~~L~~l~l~  309 (328)
T 4fcg_A          281 KLDLRGCVNLSR---LPSLIAQLPANCIILVP  309 (328)
T ss_dssp             EEECTTCTTCCC---CCGGGGGSCTTCEEECC
T ss_pred             EEeCCCCCchhh---ccHHHhhccCceEEeCC
Confidence            999999753333   23346889999999884

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.73  E-value=1.5e-09  Score=103.57  Aligned_cols=199  Identities=16%  Similarity=0.159  Sum_probs=112.6

Q ss_pred             ccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCc-e-eEeCCcCccceEEeeccCCCCeEE----EECCcee
Q 013265          155 RHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTS-L-KVSGPSLKLKHLKLNKLDNLKDLQ----LHAPNLL  228 (446)
Q Consensus       155 ~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~-~-~i~~~~~~L~~L~i~~~~~l~~~~----i~~p~L~  228 (446)
                      ++++.|++.+..+++....  +.. +++|++|++.+|..... + .+...+++|++|.+.+|. +....    -..++|+
T Consensus        70 ~~l~~L~l~~n~l~~~~~~--~~~-~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~~~L~  145 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAE--HFS-PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR-LSDPIVNTLAKNSNLV  145 (336)
T ss_dssp             TTCSEEECTTCEECSCCCS--CCC-CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCB-CCHHHHHHHTTCTTCS
T ss_pred             ccceEEEcCCccccccchh--hcc-CCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcc-cCHHHHHHHhcCCCCC
Confidence            7888888888776653211  446 89999999988863211 1 233455788888888875 32111    1257788


Q ss_pred             EEEEccc-ccc-----cccCCCCCcceEEeccc-chhhhhhhhhhhhccCC-CceEEEEeecccccccchhcccccccCC
Q 013265          229 SFEYSGP-ILP-----FSFRNVPNLVDASFWGC-FSAYIAKNLCQHSIFLV-QLHTLKLDTCHLLIGDSEYRAGRYLHDI  300 (446)
Q Consensus       229 ~l~~~~~-~~~-----~~~~~~~~L~~l~l~~~-~~~~~~~~l~~~l~~l~-~l~~L~L~~~~~~~~~~~~~~~~~~~~~  300 (446)
                      +|++.++ ...     ..+.++++|+++++..+ ....  ..+...+..++ +|+.|.+.++...+     ....++..+
T Consensus       146 ~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~--~~~~~~~~~l~~~L~~L~l~~~~~~~-----~~~~l~~~~  218 (336)
T 2ast_B          146 RLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTE--KHVQVAVAHVSETITQLNLSGYRKNL-----QKSDLSTLV  218 (336)
T ss_dssp             EEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCH--HHHHHHHHHSCTTCCEEECCSCGGGS-----CHHHHHHHH
T ss_pred             EEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcCh--HHHHHHHHhcccCCCEEEeCCCcccC-----CHHHHHHHH
Confidence            8887776 222     23456777888877665 3321  12235667777 78888877742111     111122233


Q ss_pred             CCCCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEEecccccccccccccccCCCCccccccCCCcEEEEEee
Q 013265          301 PEMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTIKDQPYLSFTELRSIRVVELLGF  377 (446)
Q Consensus       301 ~~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~p~c~~~~~~~l~~L~~v~i~~~  377 (446)
                      ..+++|++|++..+....+  .....+..+|+|++|++..+.   ......+..+.        ++.+|+++.+.|.
T Consensus       219 ~~~~~L~~L~l~~~~~l~~--~~~~~l~~l~~L~~L~l~~~~---~~~~~~~~~l~--------~~~~L~~L~l~~~  282 (336)
T 2ast_B          219 RRCPNLVHLDLSDSVMLKN--DCFQEFFQLNYLQHLSLSRCY---DIIPETLLELG--------EIPTLKTLQVFGI  282 (336)
T ss_dssp             HHCTTCSEEECTTCTTCCG--GGGGGGGGCTTCCEEECTTCT---TCCGGGGGGGG--------GCTTCCEEECTTS
T ss_pred             hhCCCCCEEeCCCCCcCCH--HHHHHHhCCCCCCEeeCCCCC---CCCHHHHHHHh--------cCCCCCEEeccCc
Confidence            4567788887777642111  112234667788888774331   11111111122        2367888888776

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.67  E-value=4.7e-09  Score=104.69  Aligned_cols=268  Identities=15%  Similarity=0.100  Sum_probs=143.4

Q ss_pred             HHcCCcEEEEeeeccccccccccccccccccCCccccccccceEEEEEEeChHHHHHHHhcCCC----CcceeeEeccCC
Q 013265          118 LERRVRRLELDFSRVVYNLRFVGQYTFPSHLDFYSSFRHLTDLSLTTVGITGEVLEHLLCYCCP----VLEVLNVAESSS  193 (446)
Q Consensus       118 ~~~~l~~L~l~~~~~~~~~~~~~~~~lp~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp----~Le~L~L~~c~~  193 (446)
                      .-+++++|.+.......    .+...+|..   ...+++|++|+|+++.+++..+..+... ++    +|++|++.+|..
T Consensus        26 ~~~~L~~L~L~~~~l~~----~~~~~l~~~---l~~~~~L~~L~Ls~n~l~~~~~~~l~~~-l~~~~~~L~~L~L~~n~i   97 (461)
T 1z7x_W           26 LLQQCQVVRLDDCGLTE----ARCKDISSA---LRVNPALAELNLRSNELGDVGVHCVLQG-LQTPSCKIQKLSLQNCCL   97 (461)
T ss_dssp             HHTTCSEEEEESSCCCH----HHHHHHHHH---HHTCTTCCEEECTTCCCHHHHHHHHHHT-TCSTTCCCCEEECTTSCC
T ss_pred             hcCCccEEEccCCCCCH----HHHHHHHHH---HHhCCCcCEEeCCCCcCChHHHHHHHHH-HhhCCCceeEEEccCCCC
Confidence            34578888876543110    001122221   2346788888888888877777777766 66    688888888753


Q ss_pred             CC----c-eeEeCCcCccceEEeeccCCCCeEEE---------ECCceeEEEEcccccc--------cccCCCCCcceEE
Q 013265          194 LT----S-LKVSGPSLKLKHLKLNKLDNLKDLQL---------HAPNLLSFEYSGPILP--------FSFRNVPNLVDAS  251 (446)
Q Consensus       194 ~~----~-~~i~~~~~~L~~L~i~~~~~l~~~~i---------~~p~L~~l~~~~~~~~--------~~~~~~~~L~~l~  251 (446)
                      ..    . ...-..+++|++|.++++. +....+         ..++|++|++.++...        ..+..+++|++++
T Consensus        98 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~  176 (461)
T 1z7x_W           98 TGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELT  176 (461)
T ss_dssp             BGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEE
T ss_pred             CHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEE
Confidence            31    1 1122344788888888776 332111         1246888888776432        1233467888888


Q ss_pred             ecccchhhh-hhhhhh-hhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEEecCCCC-CHHHHHH-HH
Q 013265          252 FWGCFSAYI-AKNLCQ-HSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTPKVN-DLIFCIA-LL  327 (446)
Q Consensus       252 l~~~~~~~~-~~~l~~-~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~-~~~~l~~-ll  327 (446)
                      +..+..... ...+.. +....++++.|.+.++.+...    ....++..+..+++|++|++..+.-.. ....+.. +.
T Consensus       177 L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~----~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~  252 (461)
T 1z7x_W          177 VSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSD----NCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLL  252 (461)
T ss_dssp             CCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTT----HHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHT
T ss_pred             CcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHH----HHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHh
Confidence            876543321 111112 222456788888877533211    001122334456788888887764111 1111222 22


Q ss_pred             hhCCCceEEEEEEecccccccccccccccCCCCccccccCCCcEEEEEeeecC-cchHHHHHHHHhcCccccceEEecCC
Q 013265          328 EAAPSLYKFSLKLVSQYDYESYESVKTIKDQPYLSFTELRSIRVVELLGFVGH-TADFELVMYLIFSAKLLEKIIIDPCP  406 (446)
Q Consensus       328 ~~~p~L~~L~l~~~~~~~~~~~~~~~~~p~c~~~~~~~l~~L~~v~i~~~~g~-~~e~~~~~~ll~~a~~Le~l~i~~~~  406 (446)
                      ..+++|++|++..   +...+.+ ...++...    ..+.+|+++.+.+..-. .....+...+..+.+.|+.+.+....
T Consensus       253 ~~~~~L~~L~L~~---n~l~~~~-~~~l~~~l----~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~  324 (461)
T 1z7x_W          253 HPSSRLRTLWIWE---CGITAKG-CGDLCRVL----RAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS  324 (461)
T ss_dssp             STTCCCCEEECTT---SCCCHHH-HHHHHHHH----HHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred             cCCCCceEEECcC---CCCCHHH-HHHHHHHH----hhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCC
Confidence            3578888888733   2222211 11112111    12377888888764322 22224555555556789999888765

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.66  E-value=1.4e-08  Score=95.65  Aligned_cols=213  Identities=17%  Similarity=0.113  Sum_probs=124.3

Q ss_pred             cccccccceEEEEEEeChHH-HHHHHhcCCCCcceeeEeccCCCCceeEeCCcCccceEEeeccCCCCeE-----EEECC
Q 013265          152 SSFRHLTDLSLTTVGITGEV-LEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDL-----QLHAP  225 (446)
Q Consensus       152 ~~~~~L~~L~L~~~~~~~~~-l~~ll~~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~l~~~-----~i~~p  225 (446)
                      ..+++|++|+|.+..++... ....+.+ +++|++|++.++...........+++|++|.+.++. +..+     ....+
T Consensus        49 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~-~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~  126 (306)
T 2z66_A           49 DKLTQLTKLSLSSNGLSFKGCCSQSDFG-TTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLR  126 (306)
T ss_dssp             TTCTTCSEEECCSSCCCEEEEEEHHHHS-CSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCT
T ss_pred             hccccCCEEECCCCccCcccCccccccc-ccccCEEECCCCccccChhhcCCCCCCCEEECCCCc-ccccccchhhhhcc
Confidence            46788888888877665221 1112446 888888888887543322222244788888887764 2211     11347


Q ss_pred             ceeEEEEccccc----ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCC
Q 013265          226 NLLSFEYSGPIL----PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIP  301 (446)
Q Consensus       226 ~L~~l~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~  301 (446)
                      +|++|++.++..    +..+.++++|+.+++..+.....  .+...+..+++|+.|+++++.+.        ...+..+.
T Consensus       127 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~~l~~L~~L~Ls~n~l~--------~~~~~~~~  196 (306)
T 2z66_A          127 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN--FLPDIFTELRNLTFLDLSQCQLE--------QLSPTAFN  196 (306)
T ss_dssp             TCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG--EECSCCTTCTTCCEEECTTSCCC--------EECTTTTT
T ss_pred             CCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc--cchhHHhhCcCCCEEECCCCCcC--------CcCHHHhc
Confidence            888888877632    23456778888888876643220  11245667788888888874321        11234566


Q ss_pred             CCCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEEecccccccccccccccCCCCcccccc-CCCcEEEEEe--ee
Q 013265          302 EMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTIKDQPYLSFTEL-RSIRVVELLG--FV  378 (446)
Q Consensus       302 ~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~p~c~~~~~~~l-~~L~~v~i~~--~~  378 (446)
                      .+++|++|.+..+.-....   ...+..+++|+.|++...   .....     .+....    .+ .+|+++.+.+  +.
T Consensus       197 ~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~L~~N---~l~~~-----~~~~~~----~~~~~L~~L~L~~N~~~  261 (306)
T 2z66_A          197 SLSSLQVLNMSHNNFFSLD---TFPYKCLNSLQVLDYSLN---HIMTS-----KKQELQ----HFPSSLAFLNLTQNDFA  261 (306)
T ss_dssp             TCTTCCEEECTTSCCSBCC---SGGGTTCTTCCEEECTTS---CCCBC-----SSSSCC----CCCTTCCEEECTTCCEE
T ss_pred             CCCCCCEEECCCCccCccC---hhhccCcccCCEeECCCC---CCccc-----CHHHHH----hhhccCCEEEccCCCee
Confidence            7788888888777411110   012467888888888432   11110     111111    12 4799999977  56


Q ss_pred             cCcchHHHHHHHH
Q 013265          379 GHTADFELVMYLI  391 (446)
Q Consensus       379 g~~~e~~~~~~ll  391 (446)
                      +......+.+++-
T Consensus       262 ~~c~~~~~~~~l~  274 (306)
T 2z66_A          262 CTCEHQSFLQWIK  274 (306)
T ss_dssp             CSGGGHHHHHHHH
T ss_pred             cccChHHHHHHHH
Confidence            6666666777653

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.64  E-value=9.5e-08  Score=91.81  Aligned_cols=171  Identities=18%  Similarity=0.098  Sum_probs=112.1

Q ss_pred             cccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCce-eEeCCcCccceEEeeccCCCCeEEE----ECCcee
Q 013265          154 FRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSL-KVSGPSLKLKHLKLNKLDNLKDLQL----HAPNLL  228 (446)
Q Consensus       154 ~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~-~i~~~~~~L~~L~i~~~~~l~~~~i----~~p~L~  228 (446)
                      +++|++|+|++..+++-. ...+.. +++|+.|++.++...... ..-..+++|++|.++++. +..+..    ..++|+
T Consensus        51 ~~~L~~L~l~~n~i~~~~-~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~  127 (353)
T 2z80_A           51 TEAVKSLDLSNNRITYIS-NSDLQR-CVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWFKPLSSLT  127 (353)
T ss_dssp             CTTCCEEECTTSCCCEEC-TTTTTT-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSSCCHHHHTTCTTCS
T ss_pred             cccCcEEECCCCcCcccC-HHHhcc-CCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc-CCcCCHhHhCCCccCC
Confidence            358888888877665321 113567 899999999887432211 112234788889888876 444432    358899


Q ss_pred             EEEEccccc---cc--ccCCCCCcceEEecccc-hhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCC
Q 013265          229 SFEYSGPIL---PF--SFRNVPNLVDASFWGCF-SAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPE  302 (446)
Q Consensus       229 ~l~~~~~~~---~~--~~~~~~~L~~l~l~~~~-~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~  302 (446)
                      +|++.+...   +.  .+.++++|+.+++..+. ......   ..+..+++|+.|++.++.+.        ...+..+..
T Consensus       128 ~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~---~~~~~l~~L~~L~l~~n~l~--------~~~~~~l~~  196 (353)
T 2z80_A          128 FLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR---KDFAGLTFLEELEIDASDLQ--------SYEPKSLKS  196 (353)
T ss_dssp             EEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT---TTTTTCCEEEEEEEEETTCC--------EECTTTTTT
T ss_pred             EEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCH---HHccCCCCCCEEECCCCCcC--------ccCHHHHhc
Confidence            999887743   22  46788999999997652 222112   45677899999999884321        122456677


Q ss_pred             CCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEEe
Q 013265          303 MCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLV  341 (446)
Q Consensus       303 ~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~  341 (446)
                      +++|++|.+..+.- ...  ...++..+++|+.|++...
T Consensus       197 l~~L~~L~l~~n~l-~~~--~~~~~~~~~~L~~L~L~~n  232 (353)
T 2z80_A          197 IQNVSHLILHMKQH-ILL--LEIFVDVTSSVECLELRDT  232 (353)
T ss_dssp             CSEEEEEEEECSCS-TTH--HHHHHHHTTTEEEEEEESC
T ss_pred             cccCCeecCCCCcc-ccc--hhhhhhhcccccEEECCCC
Confidence            89999999988852 222  2335667899999999654

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.62  E-value=8.3e-08  Score=91.88  Aligned_cols=210  Identities=16%  Similarity=0.109  Sum_probs=101.0

Q ss_pred             ccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeEeCCcCccceEEeeccCCCCeEE--EECCceeEE
Q 013265          153 SFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQ--LHAPNLLSF  230 (446)
Q Consensus       153 ~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~l~~~~--i~~p~L~~l  230 (446)
                      .+++|++|+|.++.+++-  . .+.. +++|++|++.+|....... ...+++|+.|.+.+|.....+.  -..++|++|
T Consensus        86 ~l~~L~~L~L~~n~i~~~--~-~~~~-l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L  160 (347)
T 4fmz_A           86 NLVKLTNLYIGTNKITDI--S-ALQN-LTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYL  160 (347)
T ss_dssp             TCTTCCEEECCSSCCCCC--G-GGTT-CTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEE
T ss_pred             cCCcCCEEEccCCcccCc--h-HHcC-CCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEE
Confidence            445555555555444331  1 1344 5555555555443222111 1223455555555553222211  123555555


Q ss_pred             EEcccccc--cccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccE
Q 013265          231 EYSGPILP--FSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKH  308 (446)
Q Consensus       231 ~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  308 (446)
                      .+.++...  ..+.++++|+++++..+.....     ..+..+++++.|.+.++.+.         ... .+..+++|++
T Consensus       161 ~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~~~~l~~L~~L~l~~n~l~---------~~~-~~~~~~~L~~  225 (347)
T 4fmz_A          161 TVTESKVKDVTPIANLTDLYSLSLNYNQIEDI-----SPLASLTSLHYFTAYVNQIT---------DIT-PVANMTRLNS  225 (347)
T ss_dssp             ECCSSCCCCCGGGGGCTTCSEEECTTSCCCCC-----GGGGGCTTCCEEECCSSCCC---------CCG-GGGGCTTCCE
T ss_pred             EecCCCcCCchhhccCCCCCEEEccCCccccc-----ccccCCCccceeecccCCCC---------CCc-hhhcCCcCCE
Confidence            55554221  1144555566665554422111     11445566666666553211         000 1445677777


Q ss_pred             EEEEecCCCCCHHHHHHHHhhCCCceEEEEEEecccccccccccccccCCCCccccccCCCcEEEEEeeecCcchHHHHH
Q 013265          309 LEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTIKDQPYLSFTELRSIRVVELLGFVGHTADFELVM  388 (446)
Q Consensus       309 L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~p~c~~~~~~~l~~L~~v~i~~~~g~~~e~~~~~  388 (446)
                      |.+..+.-... ..    +..+|+|++|++...   ...+      ++.     +..+.+|+++.+.+..-..-  .   
T Consensus       226 L~l~~n~l~~~-~~----~~~l~~L~~L~l~~n---~l~~------~~~-----~~~l~~L~~L~l~~n~l~~~--~---  281 (347)
T 4fmz_A          226 LKIGNNKITDL-SP----LANLSQLTWLEIGTN---QISD------INA-----VKDLTKLKMLNVGSNQISDI--S---  281 (347)
T ss_dssp             EECCSSCCCCC-GG----GTTCTTCCEEECCSS---CCCC------CGG-----GTTCTTCCEEECCSSCCCCC--G---
T ss_pred             EEccCCccCCC-cc----hhcCCCCCEEECCCC---ccCC------Chh-----HhcCCCcCEEEccCCccCCC--h---
Confidence            77777642111 11    567778888877432   1111      111     11237899998887532221  1   


Q ss_pred             HHHhcCccccceEEecCCC
Q 013265          389 YLIFSAKLLEKIIIDPCPT  407 (446)
Q Consensus       389 ~ll~~a~~Le~l~i~~~~~  407 (446)
                       .+.+.+.|+.+.+..+.-
T Consensus       282 -~~~~l~~L~~L~L~~n~l  299 (347)
T 4fmz_A          282 -VLNNLSQLNSLFLNNNQL  299 (347)
T ss_dssp             -GGGGCTTCSEEECCSSCC
T ss_pred             -hhcCCCCCCEEECcCCcC
Confidence             246778999999887643

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.62  E-value=7.5e-08  Score=92.16  Aligned_cols=213  Identities=15%  Similarity=0.155  Sum_probs=142.5

Q ss_pred             ccccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeEeCCcCccceEEeeccCCCCeEE--EECCcee
Q 013265          151 YSSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQ--LHAPNLL  228 (446)
Q Consensus       151 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~l~~~~--i~~p~L~  228 (446)
                      ...+++|++|+|.++.+++..-   +.. +++|+.|++.+|.....+.....+++|+.|.+.++. +..+.  -..++|+
T Consensus       106 ~~~l~~L~~L~l~~n~i~~~~~---~~~-l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~l~~L~  180 (347)
T 4fmz_A          106 LQNLTNLRELYLNEDNISDISP---LAN-LTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVTPIANLTDLY  180 (347)
T ss_dssp             GTTCTTCSEEECTTSCCCCCGG---GTT-CTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC-CCCCGGGGGCTTCS
T ss_pred             HcCCCcCCEEECcCCcccCchh---hcc-CCceeEEECCCCCCcccccchhhCCCCcEEEecCCC-cCCchhhccCCCCC
Confidence            4578999999999988765321   678 999999999999766655444556889999999886 33221  2458999


Q ss_pred             EEEEcccccc--cccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcc
Q 013265          229 SFEYSGPILP--FSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNL  306 (446)
Q Consensus       229 ~l~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L  306 (446)
                      +|++.++...  ..+..+++|+.+++..+.....     ..+..+++++.|.+.++.+.         ..+ .+..+++|
T Consensus       181 ~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~-----~~~~~~~~L~~L~l~~n~l~---------~~~-~~~~l~~L  245 (347)
T 4fmz_A          181 SLSLNYNQIEDISPLASLTSLHYFTAYVNQITDI-----TPVANMTRLNSLKIGNNKIT---------DLS-PLANLSQL  245 (347)
T ss_dssp             EEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC-----GGGGGCTTCCEEECCSSCCC---------CCG-GGTTCTTC
T ss_pred             EEEccCCcccccccccCCCccceeecccCCCCCC-----chhhcCCcCCEEEccCCccC---------CCc-chhcCCCC
Confidence            9999887432  1266788899999876633221     12678899999999885332         111 15678899


Q ss_pred             cEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEEecccccccccccccccCCCCccccccCCCcEEEEEeeecCcchHHH
Q 013265          307 KHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTIKDQPYLSFTELRSIRVVELLGFVGHTADFEL  386 (446)
Q Consensus       307 ~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~p~c~~~~~~~l~~L~~v~i~~~~g~~~e~~~  386 (446)
                      ++|++..+.-. ++    ..+..+|+|+.|++...   ...+.   ....        .+.+|+++.+.+..-...... 
T Consensus       246 ~~L~l~~n~l~-~~----~~~~~l~~L~~L~l~~n---~l~~~---~~~~--------~l~~L~~L~L~~n~l~~~~~~-  305 (347)
T 4fmz_A          246 TWLEIGTNQIS-DI----NAVKDLTKLKMLNVGSN---QISDI---SVLN--------NLSQLNSLFLNNNQLGNEDME-  305 (347)
T ss_dssp             CEEECCSSCCC-CC----GGGTTCTTCCEEECCSS---CCCCC---GGGG--------GCTTCSEEECCSSCCCGGGHH-
T ss_pred             CEEECCCCccC-CC----hhHhcCCCcCEEEccCC---ccCCC---hhhc--------CCCCCCEEECcCCcCCCcChh-
Confidence            99999887421 11    23678899999998533   22111   1111        237788888887644322222 


Q ss_pred             HHHHHhcCccccceEEecCC
Q 013265          387 VMYLIFSAKLLEKIIIDPCP  406 (446)
Q Consensus       387 ~~~ll~~a~~Le~l~i~~~~  406 (446)
                         .+.+.+.|+.+.+..+.
T Consensus       306 ---~l~~l~~L~~L~L~~n~  322 (347)
T 4fmz_A          306 ---VIGGLTNLTTLFLSQNH  322 (347)
T ss_dssp             ---HHHTCTTCSEEECCSSS
T ss_pred             ---HhhccccCCEEEccCCc
Confidence               23567888888888765

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.58  E-value=7.6e-09  Score=98.06  Aligned_cols=243  Identities=10%  Similarity=0.035  Sum_probs=151.4

Q ss_pred             hHHHHHHHHHH--cCCcEEEEeeeccccccccccccccccccCCccccccccceEEEEEEeChHHHHHHHhcCCCCccee
Q 013265          109 DIDNWIKFALE--RRVRRLELDFSRVVYNLRFVGQYTFPSHLDFYSSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVL  186 (446)
Q Consensus       109 ~~~~wi~~~~~--~~l~~L~l~~~~~~~~~~~~~~~~lp~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L  186 (446)
                      .+...+.....  +++++|.+.....         -.++..  ....+++|++|+|+++.+++..  . +.. +++|++|
T Consensus        21 ~l~~~~~~~~~~~~~L~~L~L~~n~l---------~~~~~~--~~~~l~~L~~L~Ls~n~l~~~~--~-~~~-l~~L~~L   85 (317)
T 3o53_A           21 SLKQALASLRQSAWNVKELDLSGNPL---------SQISAA--DLAPFTKLELLNLSSNVLYETL--D-LES-LSTLRTL   85 (317)
T ss_dssp             THHHHHHHHHTTGGGCSEEECTTSCC---------CCCCHH--HHTTCTTCCEEECTTSCCEEEE--E-ETT-CTTCCEE
T ss_pred             chhhhHHHHhccCCCCCEEECcCCcc---------CcCCHH--HhhCCCcCCEEECCCCcCCcch--h-hhh-cCCCCEE
Confidence            45555554433  3688887744321         112211  1346789999999887665321  1 677 9999999


Q ss_pred             eEeccCCCCceeEeCCcCccceEEeeccCCCCeEEEE-CCceeEEEEccccc----ccccCCCCCcceEEecccchhhhh
Q 013265          187 NVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQLH-APNLLSFEYSGPIL----PFSFRNVPNLVDASFWGCFSAYIA  261 (446)
Q Consensus       187 ~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~l~~~~i~-~p~L~~l~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~  261 (446)
                      ++.++... .  +. ..++|++|.+.++. +..+... .++|+.|++.++..    +..+.++++|+.++++.+......
T Consensus        86 ~Ls~n~l~-~--l~-~~~~L~~L~l~~n~-l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  160 (317)
T 3o53_A           86 DLNNNYVQ-E--LL-VGPSIETLHAANNN-ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN  160 (317)
T ss_dssp             ECCSSEEE-E--EE-ECTTCCEEECCSSC-CSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE
T ss_pred             ECcCCccc-c--cc-CCCCcCEEECCCCc-cCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc
Confidence            99988522 1  22 22789999999887 6655443 58899999988743    335667889999999876433211


Q ss_pred             hhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEEe
Q 013265          262 KNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLV  341 (446)
Q Consensus       262 ~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~  341 (446)
                      .  ..+...+++|+.|.++++.+.         .++ ....+++|++|++..+.-..    +..-+..+++|+.|++...
T Consensus       161 ~--~~~~~~l~~L~~L~L~~N~l~---------~~~-~~~~l~~L~~L~Ls~N~l~~----l~~~~~~l~~L~~L~L~~N  224 (317)
T 3o53_A          161 F--AELAASSDTLEHLNLQYNFIY---------DVK-GQVVFAKLKTLDLSSNKLAF----MGPEFQSAAGVTWISLRNN  224 (317)
T ss_dssp             G--GGGGGGTTTCCEEECTTSCCC---------EEE-CCCCCTTCCEEECCSSCCCE----ECGGGGGGTTCSEEECTTS
T ss_pred             H--HHHhhccCcCCEEECCCCcCc---------ccc-cccccccCCEEECCCCcCCc----chhhhcccCcccEEECcCC
Confidence            1  145567899999999885331         111 22347899999999885211    1112567899999999432


Q ss_pred             cccccccccccccccCCCCccccccCCCcEEEEEeeecCcchHHHHHHHHhcCccccceEEe
Q 013265          342 SQYDYESYESVKTIKDQPYLSFTELRSIRVVELLGFVGHTADFELVMYLIFSAKLLEKIIID  403 (446)
Q Consensus       342 ~~~~~~~~~~~~~~p~c~~~~~~~l~~L~~v~i~~~~g~~~e~~~~~~ll~~a~~Le~l~i~  403 (446)
                         .      +..+|....    .+.+|+.+.+.+-.-...   .....+.+.+.|+.+.+.
T Consensus       225 ---~------l~~l~~~~~----~l~~L~~L~l~~N~~~~~---~~~~~~~~~~~L~~l~l~  270 (317)
T 3o53_A          225 ---K------LVLIEKALR----FSQNLEHFDLRGNGFHCG---TLRDFFSKNQRVQTVAKQ  270 (317)
T ss_dssp             ---C------CCEECTTCC----CCTTCCEEECTTCCCBHH---HHHHHHHTCHHHHHHHHH
T ss_pred             ---c------ccchhhHhh----cCCCCCEEEccCCCccCc---CHHHHHhccccceEEECC
Confidence               2      222343222    347899998886543322   223345677778877776

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.55  E-value=8.3e-08  Score=98.29  Aligned_cols=102  Identities=15%  Similarity=0.096  Sum_probs=44.5

Q ss_pred             CCceeEEEEccccc----c-cccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhccccccc
Q 013265          224 APNLLSFEYSGPIL----P-FSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLH  298 (446)
Q Consensus       224 ~p~L~~l~~~~~~~----~-~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~  298 (446)
                      .++|++|++.++..    + ..+.++++|+.+++..+.......   ..+..+++|+.|.+.++.+       ....++.
T Consensus       395 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l-------~~~~~p~  464 (570)
T 2z63_A          395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN---GIFNGLSSLEVLKMAGNSF-------QENFLPD  464 (570)
T ss_dssp             CTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCT---TTTTTCTTCCEEECTTCEE-------GGGEECS
T ss_pred             cCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccch---hhhhcCCcCcEEECcCCcC-------ccccchh
Confidence            35555555544321    1 123445555555554432211111   3344555566666555321       1112234


Q ss_pred             CCCCCCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEE
Q 013265          299 DIPEMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSL  338 (446)
Q Consensus       299 ~~~~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l  338 (446)
                      .+..+++|+.|++..+.-...   ....+..+|+|+.|++
T Consensus       465 ~~~~l~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~l  501 (570)
T 2z63_A          465 IFTELRNLTFLDLSQCQLEQL---SPTAFNSLSSLQVLNM  501 (570)
T ss_dssp             CCTTCTTCCEEECTTSCCCEE---CTTTTTTCTTCCEEEC
T ss_pred             hhhcccCCCEEECCCCccccC---ChhhhhcccCCCEEeC
Confidence            445556666666655531110   0112345566666666

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.52  E-value=2e-08  Score=100.14  Aligned_cols=238  Identities=15%  Similarity=0.137  Sum_probs=133.8

Q ss_pred             ccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCc----e-eEeCCcCccceEEeeccCCCCeEEE-----EC
Q 013265          155 RHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTS----L-KVSGPSLKLKHLKLNKLDNLKDLQL-----HA  224 (446)
Q Consensus       155 ~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~----~-~i~~~~~~L~~L~i~~~~~l~~~~i-----~~  224 (446)
                      ++|++|+|++..+++..+..++.. +|+|++|++.+|.....    + ..-..+++|++|+++++. +....+     ..
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~-~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l   80 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPL-LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQGL   80 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHH-HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHTT
T ss_pred             ccceehhhhhcccCchhHHHHHhh-cCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHHHHHHHHHH
Confidence            566777777777776666666677 77777777777653211    0 111123567777776654 222100     11


Q ss_pred             C----ceeEEEEccccc--------ccccCCCCCcceEEecccchhhh-hhhhhh-hhccCCCceEEEEeecccccccch
Q 013265          225 P----NLLSFEYSGPIL--------PFSFRNVPNLVDASFWGCFSAYI-AKNLCQ-HSIFLVQLHTLKLDTCHLLIGDSE  290 (446)
Q Consensus       225 p----~L~~l~~~~~~~--------~~~~~~~~~L~~l~l~~~~~~~~-~~~l~~-~l~~l~~l~~L~L~~~~~~~~~~~  290 (446)
                      +    +|++|++.++..        +-.+.++++|+++++..+..... ...+.. +....++|++|.+..+.+...   
T Consensus        81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~---  157 (461)
T 1z7x_W           81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAA---  157 (461)
T ss_dssp             CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG---
T ss_pred             hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHH---
Confidence            2    577777776642        23467889999999987654322 122222 233466899999988643211   


Q ss_pred             hcccccccCCCCCCcccEEEEEecCCC-CCHHHHHHHHh-hCCCceEEEEEEecccccccccccccccCCCCccccccCC
Q 013265          291 YRAGRYLHDIPEMCNLKHLEIIGTPKV-NDLIFCIALLE-AAPSLYKFSLKLVSQYDYESYESVKTIKDQPYLSFTELRS  368 (446)
Q Consensus       291 ~~~~~~~~~~~~~~~L~~L~L~~~~~~-~~~~~l~~ll~-~~p~L~~L~l~~~~~~~~~~~~~~~~~p~c~~~~~~~l~~  368 (446)
                       ....+...+..+++|++|++..+.-. .....+...+. ..++|+.|++..   +...+.+ ...++...    ..+.+
T Consensus       158 -~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~---n~l~~~~-~~~l~~~l----~~~~~  228 (461)
T 1z7x_W          158 -SCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLES---CGVTSDN-CRDLCGIV----ASKAS  228 (461)
T ss_dssp             -GHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTT---SCCBTTH-HHHHHHHH----HHCTT
T ss_pred             -HHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccC---CCCcHHH-HHHHHHHH----HhCCC
Confidence             11122333455789999999887511 11222333232 466999999843   2222211 01111111    12378


Q ss_pred             CcEEEEEeeecC-cchHHHHHHHHhcCccccceEEecCC
Q 013265          369 IRVVELLGFVGH-TADFELVMYLIFSAKLLEKIIIDPCP  406 (446)
Q Consensus       369 L~~v~i~~~~g~-~~e~~~~~~ll~~a~~Le~l~i~~~~  406 (446)
                      |+++.+.+..-. ..-..+...+..+.+.|+.+.+..+.
T Consensus       229 L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~  267 (461)
T 1z7x_W          229 LRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG  267 (461)
T ss_dssp             CCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred             ccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCC
Confidence            999999875422 22234455565678999999998764

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.51  E-value=5.5e-08  Score=100.51  Aligned_cols=97  Identities=19%  Similarity=0.150  Sum_probs=51.1

Q ss_pred             cccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeEeCCcCccceEEeeccCCCCeEE------EECC
Q 013265          152 SSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQ------LHAP  225 (446)
Q Consensus       152 ~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~l~~~~------i~~p  225 (446)
                      ..+++|++|.+.++.++.  +..+  . +|.|++|++.++.......+. .+++|+.|.++++. +..+.      ...+
T Consensus       304 ~~~~~L~~L~l~~n~l~~--lp~~--~-l~~L~~L~l~~n~~~~~~~~~-~l~~L~~L~ls~n~-l~~~~~~~~~~~~~~  376 (606)
T 3vq2_A          304 PKHFKWQSLSIIRCQLKQ--FPTL--D-LPFLKSLTLTMNKGSISFKKV-ALPSLSYLDLSRNA-LSFSGCCSYSDLGTN  376 (606)
T ss_dssp             CTTCCCSEEEEESCCCSS--CCCC--C-CSSCCEEEEESCSSCEECCCC-CCTTCCEEECCSSC-EEEEEECCHHHHCCS
T ss_pred             cccccCCEEEcccccCcc--cccC--C-CCccceeeccCCcCccchhhc-cCCCCCEEECcCCc-cCCCcchhhhhccCC
Confidence            355667777777766632  2222  5 777777777776544433222 33566666666654 33221      1235


Q ss_pred             ceeEEEEccccc---ccccCCCCCcceEEeccc
Q 013265          226 NLLSFEYSGPIL---PFSFRNVPNLVDASFWGC  255 (446)
Q Consensus       226 ~L~~l~~~~~~~---~~~~~~~~~L~~l~l~~~  255 (446)
                      +|++|++.++..   +..+.++++|+.+++..+
T Consensus       377 ~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n  409 (606)
T 3vq2_A          377 SLRHLDLSFNGAIIMSANFMGLEELQHLDFQHS  409 (606)
T ss_dssp             CCCEEECCSCSEEEECCCCTTCTTCCEEECTTS
T ss_pred             cccEeECCCCccccchhhccCCCCCCeeECCCC
Confidence            566666555421   233445555666655443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.51  E-value=3.7e-08  Score=91.69  Aligned_cols=210  Identities=14%  Similarity=0.047  Sum_probs=117.0

Q ss_pred             cccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCce-eEeCCcCccceEEeeccCCCCeEEE----ECCcee
Q 013265          154 FRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSL-KVSGPSLKLKHLKLNKLDNLKDLQL----HAPNLL  228 (446)
Q Consensus       154 ~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~-~i~~~~~~L~~L~i~~~~~l~~~~i----~~p~L~  228 (446)
                      .++|++|.|.+..+++-. ...+.. +++|++|++.++...... .....+++|++|.+.++..+..+..    ..++|+
T Consensus        31 ~~~l~~L~l~~n~i~~~~-~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~  108 (285)
T 1ozn_A           31 PAASQRIFLHGNRISHVP-AASFRA-CRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLH  108 (285)
T ss_dssp             CTTCSEEECTTSCCCEEC-TTTTTT-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCC
T ss_pred             CCCceEEEeeCCcCCccC-HHHccc-CCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCC
Confidence            357777777766554321 112456 777777777766432110 1112336677777777653333311    246777


Q ss_pred             EEEEccccc----ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCC
Q 013265          229 SFEYSGPIL----PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMC  304 (446)
Q Consensus       229 ~l~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~  304 (446)
                      +|++.++..    +..+.++++|+.+++..+.......   ..+..+++|+.|++.++.+.        ......+..++
T Consensus       109 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~--------~~~~~~~~~l~  177 (285)
T 1ozn_A          109 TLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD---DTFRDLGNLTHLFLHGNRIS--------SVPERAFRGLH  177 (285)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT---TTTTTCTTCCEEECCSSCCC--------EECTTTTTTCT
T ss_pred             EEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCH---hHhccCCCccEEECCCCccc--------ccCHHHhcCcc
Confidence            777776632    2345677888888887654332222   34567788888888874221        11122356678


Q ss_pred             cccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEEeccccccccccccccc-CCCCccccccCCCcEEEEEe--eecCc
Q 013265          305 NLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTIK-DQPYLSFTELRSIRVVELLG--FVGHT  381 (446)
Q Consensus       305 ~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~p-~c~~~~~~~l~~L~~v~i~~--~~g~~  381 (446)
                      +|++|.+..+.-...   ....+..+++|+.|++...   ...      ..+ +.    +..+.+|+++.+.+  +.+..
T Consensus       178 ~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~l~~n---~l~------~~~~~~----~~~l~~L~~L~l~~N~~~c~~  241 (285)
T 1ozn_A          178 SLDRLLLHQNRVAHV---HPHAFRDLGRLMTLYLFAN---NLS------ALPTEA----LAPLRALQYLRLNDNPWVCDC  241 (285)
T ss_dssp             TCCEEECCSSCCCEE---CTTTTTTCTTCCEEECCSS---CCS------CCCHHH----HTTCTTCCEEECCSSCEECSG
T ss_pred             ccCEEECCCCccccc---CHhHccCcccccEeeCCCC---cCC------cCCHHH----cccCcccCEEeccCCCccCCC
Confidence            888888887741111   0123567888888888432   111      111 10    11236788888876  45565


Q ss_pred             chHHHHHHHHh
Q 013265          382 ADFELVMYLIF  392 (446)
Q Consensus       382 ~e~~~~~~ll~  392 (446)
                      ....+.+++-.
T Consensus       242 ~~~~~~~~l~~  252 (285)
T 1ozn_A          242 RARPLWAWLQK  252 (285)
T ss_dssp             GGHHHHHHHHH
T ss_pred             CcHHHHHHHHh
Confidence            65566666533

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=98.51  E-value=4.1e-08  Score=92.78  Aligned_cols=217  Identities=13%  Similarity=0.077  Sum_probs=107.2

Q ss_pred             cccccccceEEEE-EEeChHHHHHHHhcCCCCcceeeEeccCCCCce-eEeCCcCccceEEeeccCCCCe-E---EEECC
Q 013265          152 SSFRHLTDLSLTT-VGITGEVLEHLLCYCCPVLEVLNVAESSSLTSL-KVSGPSLKLKHLKLNKLDNLKD-L---QLHAP  225 (446)
Q Consensus       152 ~~~~~L~~L~L~~-~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~-~i~~~~~~L~~L~i~~~~~l~~-~---~i~~p  225 (446)
                      ..+++|++|+|++ ..+.+. +...+.. +++|++|++.++...+.+ .....+++|++|.++++. +.. +   .-..+
T Consensus        73 ~~l~~L~~L~L~~~n~l~~~-~p~~l~~-l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~  149 (313)
T 1ogq_A           73 ANLPYLNFLYIGGINNLVGP-IPPAIAK-LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNA-LSGTLPPSISSLP  149 (313)
T ss_dssp             GGCTTCSEEEEEEETTEESC-CCGGGGG-CTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSE-EESCCCGGGGGCT
T ss_pred             hCCCCCCeeeCCCCCccccc-CChhHhc-CCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCc-cCCcCChHHhcCC
Confidence            3566677777764 323221 1112455 677777777666543211 111223566666666554 211 1   01246


Q ss_pred             ceeEEEEccccc----ccccCCCC-CcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCC
Q 013265          226 NLLSFEYSGPIL----PFSFRNVP-NLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDI  300 (446)
Q Consensus       226 ~L~~l~~~~~~~----~~~~~~~~-~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~  300 (446)
                      +|++|++.++..    +..+.+++ .|+.+++..+.......   ..+..++ |+.|++..+.+.        ...+..+
T Consensus       150 ~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~---~~~~~l~-L~~L~Ls~N~l~--------~~~~~~~  217 (313)
T 1ogq_A          150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP---PTFANLN-LAFVDLSRNMLE--------GDASVLF  217 (313)
T ss_dssp             TCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECC---GGGGGCC-CSEEECCSSEEE--------ECCGGGC
T ss_pred             CCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCC---hHHhCCc-ccEEECcCCccc--------CcCCHHH
Confidence            677776665532    33455555 67777776553321111   3334444 777777763221        1223445


Q ss_pred             CCCCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEEecccccccccccccccCCCCccccccCCCcEEEEEe--ee
Q 013265          301 PEMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTIKDQPYLSFTELRSIRVVELLG--FV  378 (446)
Q Consensus       301 ~~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~p~c~~~~~~~l~~L~~v~i~~--~~  378 (446)
                      ..+++|+.|.+..+.-......    +..+++|++|++...   ...  +   ..|..+    ..+.+|+++.+.+  +.
T Consensus       218 ~~l~~L~~L~L~~N~l~~~~~~----~~~l~~L~~L~Ls~N---~l~--~---~~p~~l----~~l~~L~~L~Ls~N~l~  281 (313)
T 1ogq_A          218 GSDKNTQKIHLAKNSLAFDLGK----VGLSKNLNGLDLRNN---RIY--G---TLPQGL----TQLKFLHSLNVSFNNLC  281 (313)
T ss_dssp             CTTSCCSEEECCSSEECCBGGG----CCCCTTCCEEECCSS---CCE--E---CCCGGG----GGCTTCCEEECCSSEEE
T ss_pred             hcCCCCCEEECCCCceeeecCc----ccccCCCCEEECcCC---ccc--C---cCChHH----hcCcCCCEEECcCCccc
Confidence            5677777777776642222111    455677777777432   111  0   122211    1346777777765  33


Q ss_pred             cCcchHHHHHHHHhcCccccceEEecCC
Q 013265          379 GHTADFELVMYLIFSAKLLEKIIIDPCP  406 (446)
Q Consensus       379 g~~~e~~~~~~ll~~a~~Le~l~i~~~~  406 (446)
                      |...+.       .+.+.|+.+.+....
T Consensus       282 ~~ip~~-------~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          282 GEIPQG-------GNLQRFDVSAYANNK  302 (313)
T ss_dssp             EECCCS-------TTGGGSCGGGTCSSS
T ss_pred             ccCCCC-------ccccccChHHhcCCC
Confidence            332221       345666666665544

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.50  E-value=2.4e-07  Score=94.49  Aligned_cols=225  Identities=18%  Similarity=0.140  Sum_probs=134.7

Q ss_pred             ccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCce-eEeCCcCccceEEeeccCCCCeEEE----ECCceeE
Q 013265          155 RHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSL-KVSGPSLKLKHLKLNKLDNLKDLQL----HAPNLLS  229 (446)
Q Consensus       155 ~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~-~i~~~~~~L~~L~i~~~~~l~~~~i----~~p~L~~  229 (446)
                      ++|++|+|++..+++.. ...+.+ +++|++|++.++...... ..-..+++|++|+++++. +..+..    ..++|++
T Consensus        26 ~~L~~L~Ls~n~l~~~~-~~~~~~-l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~  102 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIG-HGDLRA-CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH-LSSLSSSWFGPLSSLKY  102 (549)
T ss_dssp             TTCCEEECCSSCCCEEC-SSTTSS-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCSCCHHHHTTCTTCCE
T ss_pred             CCccEEECcCCccCccC-hhhhhc-CCcccEEECCCCCcCccChhhccccccCCEEECCCCc-cCccCHHHhccCCCCcE
Confidence            68888888887765321 112567 889999999887543221 111244788888888876 443321    3578999


Q ss_pred             EEEccccc-----ccccCCCCCcceEEecccc-hhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCC
Q 013265          230 FEYSGPIL-----PFSFRNVPNLVDASFWGCF-SAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEM  303 (446)
Q Consensus       230 l~~~~~~~-----~~~~~~~~~L~~l~l~~~~-~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~  303 (446)
                      |++.++..     +..+.++++|+.+++..+. ......   ..+..+++|+.|++.++.+.        ...+..+..+
T Consensus       103 L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~---~~~~~l~~L~~L~L~~n~l~--------~~~~~~l~~l  171 (549)
T 2z81_A          103 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR---IDFAGLTSLNELEIKALSLR--------NYQSQSLKSI  171 (549)
T ss_dssp             EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT---TTTTTCCEEEEEEEEETTCC--------EECTTTTTTC
T ss_pred             EECCCCcccccchhhhhhccCCccEEECCCCccccccCH---hhhhcccccCeeeccCCccc--------ccChhhhhcc
Confidence            98887743     2356788999999997653 111111   34577899999999884321        2235567778


Q ss_pred             CcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEEecccccccccccccccCCCCccccccCCCcEEEEEeeecCcch
Q 013265          304 CNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTIKDQPYLSFTELRSIRVVELLGFVGHTAD  383 (446)
Q Consensus       304 ~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~p~c~~~~~~~l~~L~~v~i~~~~g~~~e  383 (446)
                      ++|++|.+..+... ..  ...++..+++|+.|++....-   ..... ...+ ..    ..+.+|+.+.+.+..-....
T Consensus       172 ~~L~~L~l~~n~~~-~~--~~~~~~~l~~L~~L~L~~n~l---~~~~~-~~~~-~~----~~~~~L~~L~l~~n~l~~~~  239 (549)
T 2z81_A          172 RDIHHLTLHLSESA-FL--LEIFADILSSVRYLELRDTNL---ARFQF-SPLP-VD----EVSSPMKKLAFRGSVLTDES  239 (549)
T ss_dssp             SEEEEEEEECSBST-TH--HHHHHHSTTTBSEEEEESCBC---TTCCC-CCCS-SC----CCCCCCCEEEEESCEEEHHH
T ss_pred             ccCceEecccCccc-cc--chhhHhhcccccEEEccCCcc---ccccc-cccc-hh----hhhhcccceeccccccchhH
Confidence            89999999887522 22  223456789999999965421   11000 0000 00    01267888888765433322


Q ss_pred             HHHHHHHHhcCccccceEEecC
Q 013265          384 FELVMYLIFSAKLLEKIIIDPC  405 (446)
Q Consensus       384 ~~~~~~ll~~a~~Le~l~i~~~  405 (446)
                      ..-+...+.+.+.|+.+.+...
T Consensus       240 ~~~l~~~~~~~~~L~~l~l~~~  261 (549)
T 2z81_A          240 FNELLKLLRYILELSEVEFDDC  261 (549)
T ss_dssp             HHHHHGGGGGCTTCCEEEEESC
T ss_pred             HHHHHHHhhhhccccccccccc
Confidence            2323333455666666666543

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.49  E-value=4.8e-08  Score=97.18  Aligned_cols=39  Identities=26%  Similarity=0.403  Sum_probs=19.3

Q ss_pred             ccccccceEEEEEEeChHHHH-HHHhcCCCCcceeeEeccC
Q 013265          153 SFRHLTDLSLTTVGITGEVLE-HLLCYCCPVLEVLNVAESS  192 (446)
Q Consensus       153 ~~~~L~~L~L~~~~~~~~~l~-~ll~~~cp~Le~L~L~~c~  192 (446)
                      ++++|++|+|.++.+++..+. ..+.. +++|++|++.++.
T Consensus       101 ~l~~L~~L~L~~n~l~~~~~~~~~~~~-l~~L~~L~L~~n~  140 (455)
T 3v47_A          101 GLANLEVLTLTQCNLDGAVLSGNFFKP-LTSLEMLVLRDNN  140 (455)
T ss_dssp             TCTTCCEEECTTSCCBTHHHHSSTTTT-CTTCCEEECCSSB
T ss_pred             CcccCCEEeCCCCCCCccccCcccccC-cccCCEEECCCCc
Confidence            455555555555555443221 12444 5555555555554

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.49  E-value=5e-08  Score=97.76  Aligned_cols=171  Identities=15%  Similarity=0.057  Sum_probs=75.2

Q ss_pred             ccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCce-eEeCCcCccceEEeeccCCCCeEEE----ECCce
Q 013265          153 SFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSL-KVSGPSLKLKHLKLNKLDNLKDLQL----HAPNL  227 (446)
Q Consensus       153 ~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~-~i~~~~~~L~~L~i~~~~~l~~~~i----~~p~L  227 (446)
                      ++++|++|+|.+..++.-. ...+.+ +++|++|+|.++...... .....+++|++|.+.++. +..+..    ..++|
T Consensus        78 ~l~~L~~L~L~~n~l~~~~-~~~~~~-l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L  154 (477)
T 2id5_A           78 NLFNLRTLGLRSNRLKLIP-LGVFTG-LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND-LVYISHRAFSGLNSL  154 (477)
T ss_dssp             TCTTCCEEECCSSCCCSCC-TTSSTT-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTT-CCEECTTSSTTCTTC
T ss_pred             CCccCCEEECCCCcCCccC-cccccC-CCCCCEEECCCCccccCChhHccccccCCEEECCCCc-cceeChhhccCCCCC
Confidence            3455555555544433210 112334 555555555544322111 001122455555555443 222211    13455


Q ss_pred             eEEEEcccccc----cccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCC
Q 013265          228 LSFEYSGPILP----FSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEM  303 (446)
Q Consensus       228 ~~l~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~  303 (446)
                      +.|++.++...    ..+.++++|+.+++..+.......   ..+..+++|+.|++..+...        ..++......
T Consensus       155 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~---~~~~~l~~L~~L~l~~~~~~--------~~~~~~~~~~  223 (477)
T 2id5_A          155 EQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRD---YSFKRLYRLKVLEISHWPYL--------DTMTPNCLYG  223 (477)
T ss_dssp             CEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECT---TCSCSCTTCCEEEEECCTTC--------CEECTTTTTT
T ss_pred             CEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeCh---hhcccCcccceeeCCCCccc--------cccCcccccC
Confidence            55555544221    123445555555554432221111   23445556666666553211        1112222233


Q ss_pred             CcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEE
Q 013265          304 CNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKL  340 (446)
Q Consensus       304 ~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~  340 (446)
                      .+|++|++..+.-. .+  -...+..+++|+.|++..
T Consensus       224 ~~L~~L~l~~n~l~-~~--~~~~~~~l~~L~~L~Ls~  257 (477)
T 2id5_A          224 LNLTSLSITHCNLT-AV--PYLAVRHLVYLRFLNLSY  257 (477)
T ss_dssp             CCCSEEEEESSCCC-SC--CHHHHTTCTTCCEEECCS
T ss_pred             ccccEEECcCCccc-cc--CHHHhcCccccCeeECCC
Confidence            47777777776411 11  123467888999998854

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.48  E-value=1.3e-07  Score=93.72  Aligned_cols=211  Identities=18%  Similarity=0.140  Sum_probs=128.5

Q ss_pred             cccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCcee-EeCCcCccceEEeeccCCCCeEEE----ECCc
Q 013265          152 SSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLK-VSGPSLKLKHLKLNKLDNLKDLQL----HAPN  226 (446)
Q Consensus       152 ~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~-i~~~~~~L~~L~i~~~~~l~~~~i----~~p~  226 (446)
                      .++++|++|+|.+..++.-.. ..+.+ +++|++|+|.++....... ....+++|++|.+.++. +..+.-    ..++
T Consensus        85 ~~l~~L~~L~Ls~n~i~~i~~-~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~  161 (440)
T 3zyj_A           85 KHLRHLEILQLSRNHIRTIEI-GAFNG-LANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPS  161 (440)
T ss_dssp             SSCSSCCEEECCSSCCCEECG-GGGTT-CSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTT
T ss_pred             hCCCCCCEEECCCCcCCccCh-hhccC-CccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCc-ccccCHHHhhhCcc
Confidence            467888888888876653211 23667 8889999888875332211 12234788888888876 554432    2478


Q ss_pred             eeEEEEcccc-c----ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCC
Q 013265          227 LLSFEYSGPI-L----PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIP  301 (446)
Q Consensus       227 L~~l~~~~~~-~----~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~  301 (446)
                      |+.|++.++. .    ...+.++++|+.+++..+.+...     .-+..+++|+.|+|+++.+.        ...+..+.
T Consensus       162 L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-----~~~~~l~~L~~L~Ls~N~l~--------~~~~~~~~  228 (440)
T 3zyj_A          162 LRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI-----PNLTPLIKLDELDLSGNHLS--------AIRPGSFQ  228 (440)
T ss_dssp             CCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC-----CCCTTCSSCCEEECTTSCCC--------EECTTTTT
T ss_pred             cCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc-----cccCCCcccCEEECCCCccC--------ccChhhhc
Confidence            8888887642 1    23466788888888876643311     12567788888888874321        12244566


Q ss_pred             CCCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEEecccccccccccccccCCCCccccccCCCcEEEEEe--eec
Q 013265          302 EMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTIKDQPYLSFTELRSIRVVELLG--FVG  379 (446)
Q Consensus       302 ~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~p~c~~~~~~~l~~L~~v~i~~--~~g  379 (446)
                      .+++|++|.|..+.-...   ....+..+++|+.|+|...         .+..++.-   .+..+.+|+.+.+.+  |..
T Consensus       229 ~l~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~L~~N---------~l~~~~~~---~~~~l~~L~~L~L~~Np~~C  293 (440)
T 3zyj_A          229 GLMHLQKLWMIQSQIQVI---ERNAFDNLQSLVEINLAHN---------NLTLLPHD---LFTPLHHLERIHLHHNPWNC  293 (440)
T ss_dssp             TCTTCCEEECTTCCCCEE---CTTSSTTCTTCCEEECTTS---------CCCCCCTT---TTSSCTTCCEEECCSSCEEC
T ss_pred             cCccCCEEECCCCceeEE---ChhhhcCCCCCCEEECCCC---------CCCccChh---HhccccCCCEEEcCCCCccC
Confidence            788899998877741110   0123567889999988432         12222221   112347899999987  556


Q ss_pred             CcchHHHHHHHHhc
Q 013265          380 HTADFELVMYLIFS  393 (446)
Q Consensus       380 ~~~e~~~~~~ll~~  393 (446)
                      ++.-..+..++-+.
T Consensus       294 dC~l~~l~~~~~~~  307 (440)
T 3zyj_A          294 NCDILWLSWWIKDM  307 (440)
T ss_dssp             SSTTHHHHHHHHTT
T ss_pred             CCCchHHHHHHHhc
Confidence            65555555555443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.47  E-value=3.5e-07  Score=91.43  Aligned_cols=209  Identities=13%  Similarity=0.116  Sum_probs=105.7

Q ss_pred             cccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeEeCCcCccceEEeeccCCCCeEE--EECCceeE
Q 013265          152 SSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQ--LHAPNLLS  229 (446)
Q Consensus       152 ~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~l~~~~--i~~p~L~~  229 (446)
                      .++++|++|.+.++.+++..-   +.. +++|++|++.+|....... ...+++|++|.+.++. +..+.  -..++|+.
T Consensus        87 ~~l~~L~~L~l~~n~l~~~~~---~~~-l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~  160 (466)
T 1o6v_A           87 KNLTKLVDILMNNNQIADITP---LAN-LTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNT-ISDISALSGLTSLQQ  160 (466)
T ss_dssp             TTCTTCCEEECCSSCCCCCGG---GTT-CTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEE-ECCCGGGTTCTTCSE
T ss_pred             hccccCCEEECCCCccccChh---hcC-CCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCCc-cCCChhhccCCcccE
Confidence            345556666665555443211   445 6666666665553222111 2233556666665553 22211  12355666


Q ss_pred             EEEccccc-ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccE
Q 013265          230 FEYSGPIL-PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKH  308 (446)
Q Consensus       230 l~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  308 (446)
                      |.+.+... ...+.++++|+.+++..+.....     ..+..+++|+.|.+.++.+..         .. .+..+++|++
T Consensus       161 L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~l~~l~~L~~L~l~~n~l~~---------~~-~~~~l~~L~~  225 (466)
T 1o6v_A          161 LSFGNQVTDLKPLANLTTLERLDISSNKVSDI-----SVLAKLTNLESLIATNNQISD---------IT-PLGILTNLDE  225 (466)
T ss_dssp             EEEEESCCCCGGGTTCTTCCEEECCSSCCCCC-----GGGGGCTTCSEEECCSSCCCC---------CG-GGGGCTTCCE
T ss_pred             eecCCcccCchhhccCCCCCEEECcCCcCCCC-----hhhccCCCCCEEEecCCcccc---------cc-cccccCCCCE
Confidence            65543311 12255666677776655432211     224566777777776642210         00 1344677777


Q ss_pred             EEEEecCCCCCHHHHHHHHhhCCCceEEEEEEecccccccccccccccCCCCccccccCCCcEEEEEeeecCcchHHHHH
Q 013265          309 LEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTIKDQPYLSFTELRSIRVVELLGFVGHTADFELVM  388 (446)
Q Consensus       309 L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~p~c~~~~~~~l~~L~~v~i~~~~g~~~e~~~~~  388 (446)
                      |.+..+.-. +.    ..+..+++|+.|++...   ...      ..+.     +..+.+|+++.+.+..-..-. .   
T Consensus       226 L~l~~n~l~-~~----~~l~~l~~L~~L~l~~n---~l~------~~~~-----~~~l~~L~~L~l~~n~l~~~~-~---  282 (466)
T 1o6v_A          226 LSLNGNQLK-DI----GTLASLTNLTDLDLANN---QIS------NLAP-----LSGLTKLTELKLGANQISNIS-P---  282 (466)
T ss_dssp             EECCSSCCC-CC----GGGGGCTTCSEEECCSS---CCC------CCGG-----GTTCTTCSEEECCSSCCCCCG-G---
T ss_pred             EECCCCCcc-cc----hhhhcCCCCCEEECCCC---ccc------cchh-----hhcCCCCCEEECCCCccCccc-c---
Confidence            777766411 11    13566777777777432   111      1111     112478999988875322111 1   


Q ss_pred             HHHhcCccccceEEecCC
Q 013265          389 YLIFSAKLLEKIIIDPCP  406 (446)
Q Consensus       389 ~ll~~a~~Le~l~i~~~~  406 (446)
                        +.+.+.|+.+.+....
T Consensus       283 --~~~l~~L~~L~L~~n~  298 (466)
T 1o6v_A          283 --LAGLTALTNLELNENQ  298 (466)
T ss_dssp             --GTTCTTCSEEECCSSC
T ss_pred             --ccCCCccCeEEcCCCc
Confidence              4677899999887654

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.47  E-value=2.9e-07  Score=86.66  Aligned_cols=165  Identities=16%  Similarity=0.125  Sum_probs=97.3

Q ss_pred             ccccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeEeCCcCccceEEeeccCCCCeEE--EECCcee
Q 013265          151 YSSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQ--LHAPNLL  228 (446)
Q Consensus       151 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~l~~~~--i~~p~L~  228 (446)
                      ...+++|++|+|+++.+++-.  . +.. +++|+.|++.++.... +.....+++|++|.++++. +..+.  -..++|+
T Consensus        59 ~~~l~~L~~L~L~~n~i~~~~--~-~~~-l~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~  132 (308)
T 1h6u_A           59 VQYLNNLIGLELKDNQITDLA--P-LKN-LTKITELELSGNPLKN-VSAIAGLQSIKTLDLTSTQ-ITDVTPLAGLSNLQ  132 (308)
T ss_dssp             GGGCTTCCEEECCSSCCCCCG--G-GTT-CCSCCEEECCSCCCSC-CGGGTTCTTCCEEECTTSC-CCCCGGGTTCTTCC
T ss_pred             hhccCCCCEEEccCCcCCCCh--h-Hcc-CCCCCEEEccCCcCCC-chhhcCCCCCCEEECCCCC-CCCchhhcCCCCCC
Confidence            456889999999888776532  2 677 9999999998876332 2222344778888888776 33321  1236777


Q ss_pred             EEEEcccccc--cccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcc
Q 013265          229 SFEYSGPILP--FSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNL  306 (446)
Q Consensus       229 ~l~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L  306 (446)
                      +|++.++...  ..+.++++|+.+++..+.....    .. +..+++|+.|.+.++.+.         .++ .+..+++|
T Consensus       133 ~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~----~~-l~~l~~L~~L~l~~n~l~---------~~~-~l~~l~~L  197 (308)
T 1h6u_A          133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDL----TP-LANLSKLTTLKADDNKIS---------DIS-PLASLPNL  197 (308)
T ss_dssp             EEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC----GG-GTTCTTCCEEECCSSCCC---------CCG-GGGGCTTC
T ss_pred             EEECCCCccCcCccccCCCCccEEEccCCcCCCC----hh-hcCCCCCCEEECCCCccC---------cCh-hhcCCCCC
Confidence            7777665321  1255667777777765532211    12 556677777777664221         011 14456677


Q ss_pred             cEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEEe
Q 013265          307 KHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLV  341 (446)
Q Consensus       307 ~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~  341 (446)
                      ++|++..+.-... .    -+..+|+|+.|++...
T Consensus       198 ~~L~L~~N~l~~~-~----~l~~l~~L~~L~l~~N  227 (308)
T 1h6u_A          198 IEVHLKNNQISDV-S----PLANTSNLFIVTLTNQ  227 (308)
T ss_dssp             CEEECTTSCCCBC-G----GGTTCTTCCEEEEEEE
T ss_pred             CEEEccCCccCcc-c----cccCCCCCCEEEccCC
Confidence            7777766642111 1    1466777777777544

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.46  E-value=8.2e-08  Score=89.30  Aligned_cols=173  Identities=18%  Similarity=0.133  Sum_probs=120.3

Q ss_pred             cccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCce--eEeCCcCccceEEeeccCCCCeEEE----ECC
Q 013265          152 SSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSL--KVSGPSLKLKHLKLNKLDNLKDLQL----HAP  225 (446)
Q Consensus       152 ~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~--~i~~~~~~L~~L~i~~~~~l~~~~i----~~p  225 (446)
                      ..+++|++|+|.+..+++-. ...+.. +++|++|++.++..+..+  .....+++|++|.+.++. +..+..    ..+
T Consensus        53 ~~~~~L~~L~l~~n~l~~~~-~~~~~~-l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~  129 (285)
T 1ozn_A           53 RACRNLTILWLHSNVLARID-AAAFTG-LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLA  129 (285)
T ss_dssp             TTCTTCCEEECCSSCCCEEC-TTTTTT-CTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCT
T ss_pred             ccCCCCCEEECCCCccceeC-HhhcCC-ccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCc-CCEECHhHhhCCc
Confidence            56889999999987765421 123677 999999999998644433  222345789999999886 443321    358


Q ss_pred             ceeEEEEcccccc----cccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCC
Q 013265          226 NLLSFEYSGPILP----FSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIP  301 (446)
Q Consensus       226 ~L~~l~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~  301 (446)
                      +|++|++.++...    ..+.++++|+.+++..+.+.....   ..+..+++|+.|.+.++.+.        ...+..+.
T Consensus       130 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~--------~~~~~~~~  198 (285)
T 1ozn_A          130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE---RAFRGLHSLDRLLLHQNRVA--------HVHPHAFR  198 (285)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT---TTTTTCTTCCEEECCSSCCC--------EECTTTTT
T ss_pred             CCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH---HHhcCccccCEEECCCCccc--------ccCHhHcc
Confidence            9999999887432    236788999999998764432222   34677899999999985331        12245667


Q ss_pred             CCCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEEe
Q 013265          302 EMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLV  341 (446)
Q Consensus       302 ~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~  341 (446)
                      .+++|++|++..+.-...   ....+..+|+|+.|++...
T Consensus       199 ~l~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~l~~N  235 (285)
T 1ozn_A          199 DLGRLMTLYLFANNLSAL---PTEALAPLRALQYLRLNDN  235 (285)
T ss_dssp             TCTTCCEEECCSSCCSCC---CHHHHTTCTTCCEEECCSS
T ss_pred             CcccccEeeCCCCcCCcC---CHHHcccCcccCEEeccCC
Confidence            789999999998852221   1245688999999999654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.45  E-value=7.4e-08  Score=95.91  Aligned_cols=210  Identities=17%  Similarity=0.125  Sum_probs=119.0

Q ss_pred             cccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCce-eEeCCcCccceEEeeccCCCCeEEE----ECCc
Q 013265          152 SSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSL-KVSGPSLKLKHLKLNKLDNLKDLQL----HAPN  226 (446)
Q Consensus       152 ~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~-~i~~~~~~L~~L~i~~~~~l~~~~i----~~p~  226 (446)
                      .++++|+.|+|++..+++-. ...+.+ +++|++|+|.++...... .....+++|++|.++++. +..+..    ..++
T Consensus        96 ~~l~~L~~L~Ls~n~i~~~~-~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~  172 (452)
T 3zyi_A           96 RHLHHLEVLQLGRNSIRQIE-VGAFNG-LASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPS  172 (452)
T ss_dssp             TTCTTCCEEECCSSCCCEEC-TTTTTT-CTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTT
T ss_pred             CCCCCCCEEECCCCccCCcC-hhhccC-cccCCEEECCCCcCCccChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCc
Confidence            46777888887776655321 123556 788888888776533211 111234677888887775 444422    2477


Q ss_pred             eeEEEEcccc-c----ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCC
Q 013265          227 LLSFEYSGPI-L----PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIP  301 (446)
Q Consensus       227 L~~l~~~~~~-~----~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~  301 (446)
                      |+.|++.++. .    ...+.++++|+.++++.+.+...     .-+..+++|+.|+++++.+.        ...+..+.
T Consensus       173 L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-----~~~~~l~~L~~L~Ls~N~l~--------~~~~~~~~  239 (452)
T 3zyi_A          173 LMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-----PNLTPLVGLEELEMSGNHFP--------EIRPGSFH  239 (452)
T ss_dssp             CCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-----CCCTTCTTCCEEECTTSCCS--------EECGGGGT
T ss_pred             ccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-----ccccccccccEEECcCCcCc--------ccCccccc
Confidence            7777776631 1    12456677788887766533211     22456777888888774321        11234456


Q ss_pred             CCCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEEecccccccccccccccCCCCccccccCCCcEEEEEe--eec
Q 013265          302 EMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTIKDQPYLSFTELRSIRVVELLG--FVG  379 (446)
Q Consensus       302 ~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~p~c~~~~~~~l~~L~~v~i~~--~~g  379 (446)
                      .+++|++|.|..+.-...   ....+..+++|+.|+|...         .+..++.-   .+..+.+|+.+.+.+  +..
T Consensus       240 ~l~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~L~~N---------~l~~~~~~---~~~~l~~L~~L~L~~Np~~C  304 (452)
T 3zyi_A          240 GLSSLKKLWVMNSQVSLI---ERNAFDGLASLVELNLAHN---------NLSSLPHD---LFTPLRYLVELHLHHNPWNC  304 (452)
T ss_dssp             TCTTCCEEECTTSCCCEE---CTTTTTTCTTCCEEECCSS---------CCSCCCTT---SSTTCTTCCEEECCSSCEEC
T ss_pred             CccCCCEEEeCCCcCceE---CHHHhcCCCCCCEEECCCC---------cCCccChH---HhccccCCCEEEccCCCcCC
Confidence            677888888876641110   0123566788888888432         12222211   112347899999887  555


Q ss_pred             CcchHHHHHHHHh
Q 013265          380 HTADFELVMYLIF  392 (446)
Q Consensus       380 ~~~e~~~~~~ll~  392 (446)
                      ++.-..+..++-+
T Consensus       305 dC~~~~l~~~l~~  317 (452)
T 3zyi_A          305 DCDILWLAWWLRE  317 (452)
T ss_dssp             STTTHHHHHHHHH
T ss_pred             CCCchHHHHHHHH
Confidence            6555555555544

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.44  E-value=1.1e-07  Score=98.35  Aligned_cols=174  Identities=17%  Similarity=0.074  Sum_probs=92.0

Q ss_pred             cccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeE--eCCcCccceEEeeccCCCCeEEE------E
Q 013265          152 SSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKV--SGPSLKLKHLKLNKLDNLKDLQL------H  223 (446)
Q Consensus       152 ~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i--~~~~~~L~~L~i~~~~~l~~~~i------~  223 (446)
                      ..+++|++|++.++.+++.. ...+.. +|+|++|++.++.....+..  ...+++|++|.+.++. +..+..      .
T Consensus       298 ~~l~~L~~L~l~~n~l~~~~-~~~~~~-l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~  374 (606)
T 3t6q_A          298 VGLSTLKKLVLSANKFENLC-QISASN-FPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD-IETSDCCNLQLRN  374 (606)
T ss_dssp             CSCTTCCEEECTTCCCSBGG-GGCGGG-CTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSC-CCEEEESTTTTTT
T ss_pred             cccccCCEEECccCCcCcCc-hhhhhc-cCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCc-cccccCcchhccc
Confidence            45678888888877766431 123566 88888888887754332211  1234677777777765 444431      2


Q ss_pred             CCceeEEEEccccc----ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccC
Q 013265          224 APNLLSFEYSGPIL----PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHD  299 (446)
Q Consensus       224 ~p~L~~l~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~  299 (446)
                      .++|++|++.++..    +..+.++++|+.+++..+.......  ...+..+++|+.|.+.++.+.        ...+..
T Consensus       375 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~l~~L~~L~l~~n~l~--------~~~~~~  444 (606)
T 3t6q_A          375 LSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDA--QSPFQNLHLLKVLNLSHSLLD--------ISSEQL  444 (606)
T ss_dssp             CTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTT--CCTTTTCTTCCEEECTTCCCB--------TTCTTT
T ss_pred             CCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCccc--chhhhCcccCCEEECCCCccC--------CcCHHH
Confidence            46777777766532    2345566777777776543221110  023455666677666653221        111233


Q ss_pred             CCCCCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEE
Q 013265          300 IPEMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSL  338 (446)
Q Consensus       300 ~~~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l  338 (446)
                      +..+++|++|.+..+.-..........+..+++|+.|++
T Consensus       445 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L  483 (606)
T 3t6q_A          445 FDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVL  483 (606)
T ss_dssp             TTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEEC
T ss_pred             HhCCCCCCEEECCCCCCCccccccchhhccCCCccEEEC
Confidence            445566666666555311100000112455666666666

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.40  E-value=4.7e-08  Score=101.03  Aligned_cols=121  Identities=17%  Similarity=0.095  Sum_probs=56.2

Q ss_pred             ccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCce---eEeCCcCccceEEeeccCCCCeEE---EECCc
Q 013265          153 SFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSL---KVSGPSLKLKHLKLNKLDNLKDLQ---LHAPN  226 (446)
Q Consensus       153 ~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~---~i~~~~~~L~~L~i~~~~~l~~~~---i~~p~  226 (446)
                      .+++|++|++.++......   -+.. +|+|+.|++.++......   .....+++|++|.+.++. +..+.   ...++
T Consensus       326 ~l~~L~~L~l~~n~~~~~~---~~~~-l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~  400 (606)
T 3vq2_A          326 DLPFLKSLTLTMNKGSISF---KKVA-LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEE  400 (606)
T ss_dssp             CCSSCCEEEEESCSSCEEC---CCCC-CTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEEECCCCTTCTT
T ss_pred             CCCccceeeccCCcCccch---hhcc-CCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc-cccchhhccCCCC
Confidence            5667777777766322211   1334 666777766665422110   001123566666666554 22221   01355


Q ss_pred             eeEEEEccccc----c-cccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEee
Q 013265          227 LLSFEYSGPIL----P-FSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDT  281 (446)
Q Consensus       227 L~~l~~~~~~~----~-~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~  281 (446)
                      |+.|++.++..    + ..+.++++|+.+++..+.......   ..+..+++|+.|.+.+
T Consensus       401 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~  457 (606)
T 3vq2_A          401 LQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFD---GIFLGLTSLNTLKMAG  457 (606)
T ss_dssp             CCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCT---TTTTTCTTCCEEECTT
T ss_pred             CCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccch---hhhcCCCCCCEEECCC
Confidence            66665555421    1 234455556665555442221111   2334455555555554

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.40  E-value=6.6e-08  Score=97.22  Aligned_cols=230  Identities=10%  Similarity=0.038  Sum_probs=145.4

Q ss_pred             CCcEEEEeeeccccccccccccccccccCCccccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeEe
Q 013265          121 RVRRLELDFSRVVYNLRFVGQYTFPSHLDFYSSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVS  200 (446)
Q Consensus       121 ~l~~L~l~~~~~~~~~~~~~~~~lp~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~  200 (446)
                      ++++|.+.....         -.+|...  ...+++|++|+|+++.+++..  . +.. +++|+.|+|.+|... .  +.
T Consensus        35 ~L~~L~Ls~n~l---------~~~~~~~--~~~l~~L~~L~Ls~N~l~~~~--~-l~~-l~~L~~L~Ls~N~l~-~--l~   96 (487)
T 3oja_A           35 NVKELDLSGNPL---------SQISAAD--LAPFTKLELLNLSSNVLYETL--D-LES-LSTLRTLDLNNNYVQ-E--LL   96 (487)
T ss_dssp             GCCEEECCSSCC---------CCCCGGG--GTTCTTCCEEECTTSCCEEEE--E-CTT-CTTCCEEECCSSEEE-E--EE
T ss_pred             CccEEEeeCCcC---------CCCCHHH--HhCCCCCCEEEeeCCCCCCCc--c-ccc-CCCCCEEEecCCcCC-C--CC
Confidence            688887754321         1222221  357889999999987765421  1 677 999999999988422 1  22


Q ss_pred             CCcCccceEEeeccCCCCeEEEE-CCceeEEEEccccc----ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCce
Q 013265          201 GPSLKLKHLKLNKLDNLKDLQLH-APNLLSFEYSGPIL----PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLH  275 (446)
Q Consensus       201 ~~~~~L~~L~i~~~~~l~~~~i~-~p~L~~l~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~  275 (446)
                       +.++|+.|.++++. +..+... .++|+.|++.++..    +..++++++|+.++++.+.+.....  ..+...+++|+
T Consensus        97 -~~~~L~~L~L~~N~-l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--~~l~~~l~~L~  172 (487)
T 3oja_A           97 -VGPSIETLHAANNN-ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF--AELAASSDTLE  172 (487)
T ss_dssp             -ECTTCCEEECCSSC-CCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEG--GGGGGGTTTCC
T ss_pred             -CCCCcCEEECcCCc-CCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcCh--HHHhhhCCccc
Confidence             22789999999987 5555433 48999999988743    3456778999999998764432211  14455789999


Q ss_pred             EEEEeecccccccchhcccccccCCCCCCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEEecccccccccccccc
Q 013265          276 TLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTI  355 (446)
Q Consensus       276 ~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~  355 (446)
                      .|+|+++.+.         ..+ ....+++|+.|+|+.+.-..-    ..-+..+++|+.|++...         .+..+
T Consensus       173 ~L~Ls~N~l~---------~~~-~~~~l~~L~~L~Ls~N~l~~~----~~~~~~l~~L~~L~Ls~N---------~l~~l  229 (487)
T 3oja_A          173 HLNLQYNFIY---------DVK-GQVVFAKLKTLDLSSNKLAFM----GPEFQSAAGVTWISLRNN---------KLVLI  229 (487)
T ss_dssp             EEECTTSCCC---------EEE-CCCCCTTCCEEECCSSCCCEE----CGGGGGGTTCSEEECTTS---------CCCEE
T ss_pred             EEecCCCccc---------ccc-ccccCCCCCEEECCCCCCCCC----CHhHcCCCCccEEEecCC---------cCccc
Confidence            9999985431         111 233578999999998852211    112567899999999432         22224


Q ss_pred             cCCCCccccccCCCcEEEEEeeecCcchHHHHHHHHhcCccccceEE
Q 013265          356 KDQPYLSFTELRSIRVVELLGFVGHTADFELVMYLIFSAKLLEKIII  402 (446)
Q Consensus       356 p~c~~~~~~~l~~L~~v~i~~~~g~~~e~~~~~~ll~~a~~Le~l~i  402 (446)
                      |....    .+.+|+.+.+.+-...+..   +...+...+.|+.+.+
T Consensus       230 p~~l~----~l~~L~~L~l~~N~l~c~~---~~~~~~~l~~L~~l~~  269 (487)
T 3oja_A          230 EKALR----FSQNLEHFDLRGNGFHCGT---LRDFFSKNQRVQTVAK  269 (487)
T ss_dssp             CTTCC----CCTTCCEEECTTCCBCHHH---HHHHHTTCHHHHHHHH
T ss_pred             chhhc----cCCCCCEEEcCCCCCcCcc---hHHHHHhCCCCcEEec
Confidence            44332    3478999988775444222   2223355555555554

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.39  E-value=2.1e-07  Score=93.25  Aligned_cols=222  Identities=18%  Similarity=0.117  Sum_probs=127.5

Q ss_pred             cccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCce-eEeCCcCccceEEeeccCCCCeEE----EECCc
Q 013265          152 SSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSL-KVSGPSLKLKHLKLNKLDNLKDLQ----LHAPN  226 (446)
Q Consensus       152 ~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~-~i~~~~~~L~~L~i~~~~~l~~~~----i~~p~  226 (446)
                      .++++|++|+|.+..+++-. ...+.+ +++|+.|+|.++...... .....+++|++|.+.++. +..+.    -..++
T Consensus        53 ~~l~~L~~L~L~~n~i~~~~-~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~  129 (477)
T 2id5_A           53 ASFPHLEELELNENIVSAVE-PGAFNN-LFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENK-IVILLDYMFQDLYN  129 (477)
T ss_dssp             TTCTTCCEEECTTSCCCEEC-TTTTTT-CTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSC-CCEECTTTTTTCTT
T ss_pred             cCCCCCCEEECCCCccCEeC-hhhhhC-CccCCEEECCCCcCCccCcccccCCCCCCEEECCCCc-cccCChhHcccccc
Confidence            46788888888876655321 122566 888888888877533221 112344778888888775 43331    13478


Q ss_pred             eeEEEEccccc----ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCC
Q 013265          227 LLSFEYSGPIL----PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPE  302 (446)
Q Consensus       227 L~~l~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~  302 (446)
                      |++|++.+...    +..+.++++|+++++..+.+.....   ..+..+++|+.|.+..+.+.        ......+..
T Consensus       130 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~l~~l~~L~~L~l~~n~i~--------~~~~~~~~~  198 (477)
T 2id5_A          130 LKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT---EALSHLHGLIVLRLRHLNIN--------AIRDYSFKR  198 (477)
T ss_dssp             CCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH---HHHTTCTTCCEEEEESCCCC--------EECTTCSCS
T ss_pred             CCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh---hHhcccCCCcEEeCCCCcCc--------EeChhhccc
Confidence            88888877632    2356678888888887664332222   45667888888888874321        111234566


Q ss_pred             CCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEEecccccccccccccccCCCCccccccCCCcEEEEEeeecCcc
Q 013265          303 MCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTIKDQPYLSFTELRSIRVVELLGFVGHTA  382 (446)
Q Consensus       303 ~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~p~c~~~~~~~l~~L~~v~i~~~~g~~~  382 (446)
                      +++|++|++..+.....+.   .-....++|++|++...   .      +..+|.   ..+..+.+|+++.+.+-.-..-
T Consensus       199 l~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~n---~------l~~~~~---~~~~~l~~L~~L~Ls~n~l~~~  263 (477)
T 2id5_A          199 LYRLKVLEISHWPYLDTMT---PNCLYGLNLTSLSITHC---N------LTAVPY---LAVRHLVYLRFLNLSYNPISTI  263 (477)
T ss_dssp             CTTCCEEEEECCTTCCEEC---TTTTTTCCCSEEEEESS---C------CCSCCH---HHHTTCTTCCEEECCSSCCCEE
T ss_pred             CcccceeeCCCCccccccC---cccccCccccEEECcCC---c------ccccCH---HHhcCccccCeeECCCCcCCcc
Confidence            7888888888764221110   01122347888888543   1      111121   0111237788888876432111


Q ss_pred             hHHHHHHHHhcCccccceEEecCC
Q 013265          383 DFELVMYLIFSAKLLEKIIIDPCP  406 (446)
Q Consensus       383 e~~~~~~ll~~a~~Le~l~i~~~~  406 (446)
                      .    ...+.+.+.|+.+.+....
T Consensus       264 ~----~~~~~~l~~L~~L~L~~n~  283 (477)
T 2id5_A          264 E----GSMLHELLRLQEIQLVGGQ  283 (477)
T ss_dssp             C----TTSCTTCTTCCEEECCSSC
T ss_pred             C----hhhccccccCCEEECCCCc
Confidence            1    0123567889988887653

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.39  E-value=3.6e-08  Score=95.18  Aligned_cols=182  Identities=14%  Similarity=0.093  Sum_probs=81.7

Q ss_pred             ccc-cccceEEEEEEeChH---HHHHHHhcCC-CCcceeeEeccCCCCce-e-----EeCCcCccceEEeeccCCCCeEE
Q 013265          153 SFR-HLTDLSLTTVGITGE---VLEHLLCYCC-PVLEVLNVAESSSLTSL-K-----VSGPSLKLKHLKLNKLDNLKDLQ  221 (446)
Q Consensus       153 ~~~-~L~~L~L~~~~~~~~---~l~~ll~~~c-p~Le~L~L~~c~~~~~~-~-----i~~~~~~L~~L~i~~~~~l~~~~  221 (446)
                      .++ +|++|+|+++.+++.   .+..++.. + ++|++|++.+|...... .     +....++|++|.++++. +....
T Consensus        48 ~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~-~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~  125 (362)
T 3goz_A           48 NTPASVTSLNLSGNSLGFKNSDELVQILAA-IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKS  125 (362)
T ss_dssp             TCCTTCCEEECCSSCGGGSCHHHHHHHHHT-SCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSC
T ss_pred             hCCCceeEEECcCCCCCHHHHHHHHHHHhc-cCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHH
Confidence            345 677777777666542   34454555 4 67777777766532111 0     11111466666666665 33222


Q ss_pred             EE---------CCceeEEEEccccccc--------ccCCCC-CcceEEecccchhh-hhhhhhhhhccC-CCceEEEEee
Q 013265          222 LH---------APNLLSFEYSGPILPF--------SFRNVP-NLVDASFWGCFSAY-IAKNLCQHSIFL-VQLHTLKLDT  281 (446)
Q Consensus       222 i~---------~p~L~~l~~~~~~~~~--------~~~~~~-~L~~l~l~~~~~~~-~~~~l~~~l~~l-~~l~~L~L~~  281 (446)
                      ..         .++|++|++.++....        .+...+ +|+.+++..+.... ....+...+..+ ++|+.|+|++
T Consensus       126 ~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~  205 (362)
T 3goz_A          126 SSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSA  205 (362)
T ss_dssp             HHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTT
T ss_pred             HHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCC
Confidence            11         1356666665543210        111222 56666655443321 112233344444 2566666655


Q ss_pred             cccccccchhcccccccCCCC-CCcccEEEEEecC-CCCCHHHHHHHHhhCCCceEEEEEE
Q 013265          282 CHLLIGDSEYRAGRYLHDIPE-MCNLKHLEIIGTP-KVNDLIFCIALLEAAPSLYKFSLKL  340 (446)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~-~~~L~~L~L~~~~-~~~~~~~l~~ll~~~p~L~~L~l~~  340 (446)
                      +.+...    ....++..+.. .++|++|+|+.+. .......+..+++.+++|+.|+++.
T Consensus       206 N~i~~~----~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~  262 (362)
T 3goz_A          206 NLLGLK----SYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDY  262 (362)
T ss_dssp             SCGGGS----CHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEH
T ss_pred             CCCChh----HHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEecc
Confidence            432110    00001111111 2356666665553 2222334445555556666665543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.39  E-value=1.5e-06  Score=87.86  Aligned_cols=262  Identities=11%  Similarity=0.058  Sum_probs=155.5

Q ss_pred             CCcceEEEEEecCCcchHHHHHHHHHHcCCcEEEEeeeccccccccccccccccccCCc--cccccccceEEEEEEe--C
Q 013265           93 HCTEELRICFDVFSNHDIDNWIKFALERRVRRLELDFSRVVYNLRFVGQYTFPSHLDFY--SSFRHLTDLSLTTVGI--T  168 (446)
Q Consensus        93 ~~l~~l~l~~~~~~~~~~~~wi~~~~~~~l~~L~l~~~~~~~~~~~~~~~~lp~~~~~~--~~~~~L~~L~L~~~~~--~  168 (446)
                      +.++.+.+.........+..+........+++|.+......        -.+|..++..  ..+++|+.+++.+..+  .
T Consensus       220 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~--------~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p  291 (520)
T 2z7x_B          220 PKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQ--------GQLDFRDFDYSGTSLKALSIHQVVSDVFGFP  291 (520)
T ss_dssp             TTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEE--------SCCCCCCCCCCSCCCCEEEEEEEEECCCCSC
T ss_pred             cchhhccccccccCHHHHHHHHHHhhhCcccEEEeeccccc--------CccccchhhcccccCceeEeccccccceecc
Confidence            34777777543222223444444444458998888654311        1355554332  5678888888887665  2


Q ss_pred             hHHHHHHHhcCCCCcceeeEeccCCCCceeEeCCcCccceEEeeccCCCCe----EEEECCceeEEEEcccccc------
Q 013265          169 GEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKD----LQLHAPNLLSFEYSGPILP------  238 (446)
Q Consensus       169 ~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~l~~----~~i~~p~L~~l~~~~~~~~------  238 (446)
                      ...+..++ . .+.|+.|.+.++..... .....+++|++|.++++. +..    ..-..++|++|++.++...      
T Consensus       292 ~~~~~~~~-~-~~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~  367 (520)
T 2z7x_B          292 QSYIYEIF-S-NMNIKNFTVSGTRMVHM-LCPSKISPFLHLDFSNNL-LTDTVFENCGHLTELETLILQMNQLKELSKIA  367 (520)
T ss_dssp             THHHHHHH-H-TCCCSEEEEESSCCCCC-CCCSSCCCCCEEECCSSC-CCTTTTTTCCCCSSCCEEECCSSCCCBHHHHH
T ss_pred             hhhhhccc-c-cCceeEEEcCCCccccc-cchhhCCcccEEEeECCc-cChhhhhhhccCCCCCEEEccCCccCccccch
Confidence            23444432 2 36899999998864332 222455789999999876 322    1124588999988877432      


Q ss_pred             cccCCCCCcceEEecccchhh-hhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEEecCCC
Q 013265          239 FSFRNVPNLVDASFWGCFSAY-IAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTPKV  317 (446)
Q Consensus       239 ~~~~~~~~L~~l~l~~~~~~~-~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~  317 (446)
                      ..+.++++|+.++++.+.... ...   ..+..+++|+.|.++++.+.        ...+..++  ++|+.|++..+.-.
T Consensus       368 ~~~~~l~~L~~L~Ls~N~l~~~l~~---~~~~~l~~L~~L~Ls~N~l~--------~~~~~~l~--~~L~~L~Ls~N~l~  434 (520)
T 2z7x_B          368 EMTTQMKSLQQLDISQNSVSYDEKK---GDCSWTKSLLSLNMSSNILT--------DTIFRCLP--PRIKVLDLHSNKIK  434 (520)
T ss_dssp             HHHTTCTTCCEEECCSSCCBCCGGG---CSCCCCTTCCEEECCSSCCC--------GGGGGSCC--TTCCEEECCSSCCC
T ss_pred             HHHhhCCCCCEEECCCCcCCccccc---chhccCccCCEEECcCCCCC--------cchhhhhc--ccCCEEECCCCccc
Confidence            236788899999997764432 111   34567789999999885331        11122222  68999999888521


Q ss_pred             CCHHHHHHHHhhCCCceEEEEEEecccccccccccccccCCCCccccccCCCcEEEEEe--eecCcchHHHHHHHHhcCc
Q 013265          318 NDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTIKDQPYLSFTELRSIRVVELLG--FVGHTADFELVMYLIFSAK  395 (446)
Q Consensus       318 ~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~p~c~~~~~~~l~~L~~v~i~~--~~g~~~e~~~~~~ll~~a~  395 (446)
                       .   +..-+..+++|+.|++...         .+..+|..   .+..+.+|+++.+.+  +.+......++...+++..
T Consensus       435 -~---ip~~~~~l~~L~~L~L~~N---------~l~~l~~~---~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~~~~~~  498 (520)
T 2z7x_B          435 -S---IPKQVVKLEALQELNVASN---------QLKSVPDG---IFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNS  498 (520)
T ss_dssp             -C---CCGGGGGCTTCCEEECCSS---------CCCCCCTT---TTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHHHTT
T ss_pred             -c---cchhhhcCCCCCEEECCCC---------cCCccCHH---HhccCCcccEEECcCCCCcccCCchHHHHHHHHhcc
Confidence             1   2222348899999998432         12223332   111347899999987  4555555566344444443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.39  E-value=3.8e-07  Score=91.11  Aligned_cols=208  Identities=17%  Similarity=0.159  Sum_probs=120.6

Q ss_pred             cccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeEeCCcCccceEEeeccCCCCeEE--EECCceeE
Q 013265          152 SSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQ--LHAPNLLS  229 (446)
Q Consensus       152 ~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~l~~~~--i~~p~L~~  229 (446)
                      ..+++|++|++.++.+++-.   -+.. +++|+.|.+.+...  .+.-...+++|+.|.++++. +..+.  -..++|++
T Consensus       131 ~~l~~L~~L~l~~n~l~~~~---~~~~-l~~L~~L~l~~~~~--~~~~~~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~  203 (466)
T 1o6v_A          131 KNLTNLNRLELSSNTISDIS---ALSG-LTSLQQLSFGNQVT--DLKPLANLTTLERLDISSNK-VSDISVLAKLTNLES  203 (466)
T ss_dssp             TTCTTCSEEEEEEEEECCCG---GGTT-CTTCSEEEEEESCC--CCGGGTTCTTCCEEECCSSC-CCCCGGGGGCTTCSE
T ss_pred             cCCCCCCEEECCCCccCCCh---hhcc-CCcccEeecCCccc--CchhhccCCCCCEEECcCCc-CCCChhhccCCCCCE
Confidence            45667777777776665421   1556 77777777754221  11112234677777777765 33321  12477888


Q ss_pred             EEEcccccc--cccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCccc
Q 013265          230 FEYSGPILP--FSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLK  307 (446)
Q Consensus       230 l~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~  307 (446)
                      |.+.++...  ..++.+++|+.+++..+.....     ..+..+++|+.|++.++.+.         ... .+..+++|+
T Consensus       204 L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~-----~~l~~l~~L~~L~l~~n~l~---------~~~-~~~~l~~L~  268 (466)
T 1o6v_A          204 LIATNNQISDITPLGILTNLDELSLNGNQLKDI-----GTLASLTNLTDLDLANNQIS---------NLA-PLSGLTKLT  268 (466)
T ss_dssp             EECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC-----GGGGGCTTCSEEECCSSCCC---------CCG-GGTTCTTCS
T ss_pred             EEecCCcccccccccccCCCCEEECCCCCcccc-----hhhhcCCCCCEEECCCCccc---------cch-hhhcCCCCC
Confidence            877776421  2255677788888866532211     23567788888888774331         111 145678888


Q ss_pred             EEEEEecCCCCCHHHHHHHHhhCCCceEEEEEEecccccccccccccccCCCCccccccCCCcEEEEEeeecCcchHHHH
Q 013265          308 HLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTIKDQPYLSFTELRSIRVVELLGFVGHTADFELV  387 (446)
Q Consensus       308 ~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~p~c~~~~~~~l~~L~~v~i~~~~g~~~e~~~~  387 (446)
                      +|.+..+.-.... .    +..+++|+.|++...   ...      ..+.     +..+.+|+.+.+.+..-..-. .  
T Consensus       269 ~L~l~~n~l~~~~-~----~~~l~~L~~L~L~~n---~l~------~~~~-----~~~l~~L~~L~L~~n~l~~~~-~--  326 (466)
T 1o6v_A          269 ELKLGANQISNIS-P----LAGLTALTNLELNEN---QLE------DISP-----ISNLKNLTYLTLYFNNISDIS-P--  326 (466)
T ss_dssp             EEECCSSCCCCCG-G----GTTCTTCSEEECCSS---CCS------CCGG-----GGGCTTCSEEECCSSCCSCCG-G--
T ss_pred             EEECCCCccCccc-c----ccCCCccCeEEcCCC---ccc------Cchh-----hcCCCCCCEEECcCCcCCCch-h--
Confidence            8888877422211 1    567888888888432   111      1111     113478999999875322111 1  


Q ss_pred             HHHHhcCccccceEEecCC
Q 013265          388 MYLIFSAKLLEKIIIDPCP  406 (446)
Q Consensus       388 ~~ll~~a~~Le~l~i~~~~  406 (446)
                         +.+.+.|+++.+....
T Consensus       327 ---~~~l~~L~~L~l~~n~  342 (466)
T 1o6v_A          327 ---VSSLTKLQRLFFYNNK  342 (466)
T ss_dssp             ---GGGCTTCCEEECCSSC
T ss_pred             ---hccCccCCEeECCCCc
Confidence               4688999999998764

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.39  E-value=2.8e-07  Score=94.35  Aligned_cols=214  Identities=14%  Similarity=0.106  Sum_probs=117.9

Q ss_pred             cccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeEeCCcCccceEEeeccCCCCeEEE------ECCceeE
Q 013265          156 HLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQL------HAPNLLS  229 (446)
Q Consensus       156 ~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~l~~~~i------~~p~L~~  229 (446)
                      +|++|.+.++.++.  +..  .. +++|++|.+.++........ ..+++|+.|.++++. +..+..      ..++|++
T Consensus       305 ~L~~L~l~~n~~~~--l~~--~~-l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~  377 (570)
T 2z63_A          305 GWQHLELVNCKFGQ--FPT--LK-LKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNG-LSFKGCCSQSDFGTTSLKY  377 (570)
T ss_dssp             CCSEEEEESCBCSS--CCB--CB-CSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSC-CBEEEEEEHHHHTCSCCCE
T ss_pred             CccEEeeccCcccc--cCc--cc-ccccCEEeCcCCcccccccc-ccCCCCCEEeCcCCc-cCccccccccccccCccCE
Confidence            56666666655542  111  34 66677777766654433322 334677777777765 443321      2477888


Q ss_pred             EEEccccc---ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcc
Q 013265          230 FEYSGPIL---PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNL  306 (446)
Q Consensus       230 l~~~~~~~---~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L  306 (446)
                      |++.++..   +..+.++++|+.+++..+.......  ...+..+++|+.|++..+.+.        ...+..+..+++|
T Consensus       378 L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~l~~L~~L~l~~n~l~--------~~~~~~~~~l~~L  447 (570)
T 2z63_A          378 LDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSE--FSVFLSLRNLIYLDISHTHTR--------VAFNGIFNGLSSL  447 (570)
T ss_dssp             EECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTT--SCTTTTCTTCCEEECTTSCCE--------ECCTTTTTTCTTC
T ss_pred             EECCCCccccccccccccCCCCEEEccCCccccccc--hhhhhcCCCCCEEeCcCCccc--------ccchhhhhcCCcC
Confidence            87776632   2236677788888876653221110  024567788888888774221        1223455667888


Q ss_pred             cEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEEecccccccccccccccCCCCccccccCCCcEEEEEeee--cCcchH
Q 013265          307 KHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTIKDQPYLSFTELRSIRVVELLGFV--GHTADF  384 (446)
Q Consensus       307 ~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~p~c~~~~~~~l~~L~~v~i~~~~--g~~~e~  384 (446)
                      ++|.+..+.-...  .+...+..+|+|+.|++...   ...+     ..|..+.    .+.+|+++.+.+..  +...+ 
T Consensus       448 ~~L~l~~n~l~~~--~~p~~~~~l~~L~~L~l~~n---~l~~-----~~~~~~~----~l~~L~~L~l~~n~l~~~~~~-  512 (570)
T 2z63_A          448 EVLKMAGNSFQEN--FLPDIFTELRNLTFLDLSQC---QLEQ-----LSPTAFN----SLSSLQVLNMASNQLKSVPDG-  512 (570)
T ss_dssp             CEEECTTCEEGGG--EECSCCTTCTTCCEEECTTS---CCCE-----ECTTTTT----TCTTCCEEECCSSCCSCCCTT-
T ss_pred             cEEECcCCcCccc--cchhhhhcccCCCEEECCCC---cccc-----CChhhhh----cccCCCEEeCCCCcCCCCCHH-
Confidence            8888877631100  11234577888888888422   1110     0122221    34678888887632  22211 


Q ss_pred             HHHHHHHhcCccccceEEecCC
Q 013265          385 ELVMYLIFSAKLLEKIIIDPCP  406 (446)
Q Consensus       385 ~~~~~ll~~a~~Le~l~i~~~~  406 (446)
                           .+.+.+.|+.+.+....
T Consensus       513 -----~~~~l~~L~~L~l~~N~  529 (570)
T 2z63_A          513 -----IFDRLTSLQKIWLHTNP  529 (570)
T ss_dssp             -----TTTTCTTCCEEECCSSC
T ss_pred             -----HhhcccCCcEEEecCCc
Confidence                 23566788887777654

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.38  E-value=2.8e-07  Score=86.80  Aligned_cols=161  Identities=17%  Similarity=0.150  Sum_probs=90.6

Q ss_pred             ccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeEeCCcCccceEEeeccCCCCeEE--EECCceeEE
Q 013265          153 SFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQ--LHAPNLLSF  230 (446)
Q Consensus       153 ~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~l~~~~--i~~p~L~~l  230 (446)
                      .+++|++|.+.++.+++-  . -+.. +++|+.|++.+|....... ...+++|++|.+.++. +..+.  -..++|++|
T Consensus        39 ~l~~L~~L~l~~~~i~~l--~-~~~~-l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L  112 (308)
T 1h6u_A           39 DLDGITTLSAFGTGVTTI--E-GVQY-LNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVSAIAGLQSIKTL  112 (308)
T ss_dssp             HHHTCCEEECTTSCCCCC--T-TGGG-CTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCGGGTTCTTCCEE
T ss_pred             HcCCcCEEEeeCCCccCc--h-hhhc-cCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCchhhcCCCCCCEE
Confidence            466777777766655432  1 1456 7777777777764332222 2344677777777765 33331  123677777


Q ss_pred             EEcccccc--cccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccE
Q 013265          231 EYSGPILP--FSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKH  308 (446)
Q Consensus       231 ~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  308 (446)
                      ++.++...  ..+.++++|+.+++..+.....     ..+..+++|+.|.+.++.+.         .++ .+..+++|++
T Consensus       113 ~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~-----~~l~~l~~L~~L~l~~n~l~---------~~~-~l~~l~~L~~  177 (308)
T 1h6u_A          113 DLTSTQITDVTPLAGLSNLQVLYLDLNQITNI-----SPLAGLTNLQYLSIGNAQVS---------DLT-PLANLSKLTT  177 (308)
T ss_dssp             ECTTSCCCCCGGGTTCTTCCEEECCSSCCCCC-----GGGGGCTTCCEEECCSSCCC---------CCG-GGTTCTTCCE
T ss_pred             ECCCCCCCCchhhcCCCCCCEEECCCCccCcC-----ccccCCCCccEEEccCCcCC---------CCh-hhcCCCCCCE
Confidence            77766321  1256677777777765532211     11556777777777764221         111 1455677777


Q ss_pred             EEEEecCCCCCHHHHHHHHhhCCCceEEEEE
Q 013265          309 LEIIGTPKVNDLIFCIALLEAAPSLYKFSLK  339 (446)
Q Consensus       309 L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~  339 (446)
                      |.+..+.-.. ...    +..+|+|+.|++.
T Consensus       178 L~l~~n~l~~-~~~----l~~l~~L~~L~L~  203 (308)
T 1h6u_A          178 LKADDNKISD-ISP----LASLPNLIEVHLK  203 (308)
T ss_dssp             EECCSSCCCC-CGG----GGGCTTCCEEECT
T ss_pred             EECCCCccCc-Chh----hcCCCCCCEEEcc
Confidence            7777664211 111    5667777777773

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.38  E-value=2.1e-07  Score=93.60  Aligned_cols=166  Identities=14%  Similarity=0.080  Sum_probs=86.4

Q ss_pred             ccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeEeCCcCccceEEeeccCCCCeEEEECCceeEEEE
Q 013265          153 SFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQLHAPNLLSFEY  232 (446)
Q Consensus       153 ~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~l~~~~i~~p~L~~l~~  232 (446)
                      .+++|++|+|+++.+++-. ...+.. +++|+.|+|.+|....... ...+++|+.|.++++. +..+. ..|+|++|++
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~-~~~~~~-l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~-~~~~L~~L~L  106 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQIS-AADLAP-FTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELL-VGPSIETLHA  106 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCC-GGGGTT-CTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE-EEEEE-ECTTCCEEEC
T ss_pred             cCCCccEEEeeCCcCCCCC-HHHHhC-CCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc-CCCCC-CCCCcCEEEC
Confidence            4556777777766655321 122455 7777777777665433333 2234667777777664 44443 2367777776


Q ss_pred             ccccc-ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCC-CCCCcccEEE
Q 013265          233 SGPIL-PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDI-PEMCNLKHLE  310 (446)
Q Consensus       233 ~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~  310 (446)
                      .++.. ......+++|+.+++..+.+.....   ..+..+++|+.|+++++.+.        ...+..+ ..+++|++|+
T Consensus       107 ~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~Ls~N~l~--------~~~~~~l~~~l~~L~~L~  175 (487)
T 3oja_A          107 ANNNISRVSCSRGQGKKNIYLANNKITMLRD---LDEGCRSRVQYLDLKLNEID--------TVNFAELAASSDTLEHLN  175 (487)
T ss_dssp             CSSCCCCEEECCCSSCEEEECCSSCCCSGGG---BCGGGGSSEEEEECTTSCCC--------EEEGGGGGGGTTTCCEEE
T ss_pred             cCCcCCCCCccccCCCCEEECCCCCCCCCCc---hhhcCCCCCCEEECCCCCCC--------CcChHHHhhhCCcccEEe
Confidence            66643 2223345667777776553322211   23455667777777663221        0111222 2456777777


Q ss_pred             EEecCCCCCHHHHHHHHhhCCCceEEEEE
Q 013265          311 IIGTPKVNDLIFCIALLEAAPSLYKFSLK  339 (446)
Q Consensus       311 L~~~~~~~~~~~l~~ll~~~p~L~~L~l~  339 (446)
                      |+.+.-... ..    ...+|+|+.|+++
T Consensus       176 Ls~N~l~~~-~~----~~~l~~L~~L~Ls  199 (487)
T 3oja_A          176 LQYNFIYDV-KG----QVVFAKLKTLDLS  199 (487)
T ss_dssp             CTTSCCCEE-EC----CCCCTTCCEEECC
T ss_pred             cCCCccccc-cc----cccCCCCCEEECC
Confidence            766631110 00    1236677777763

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.38  E-value=4.4e-08  Score=92.54  Aligned_cols=40  Identities=18%  Similarity=0.048  Sum_probs=19.0

Q ss_pred             CCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEee
Q 013265          242 RNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDT  281 (446)
Q Consensus       242 ~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~  281 (446)
                      .++++|+.+++..+.+.........+...+++|+.|+++.
T Consensus       198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~  237 (312)
T 1wwl_A          198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSH  237 (312)
T ss_dssp             TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTT
T ss_pred             ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCC
Confidence            4555666666654432211111113444556666666665

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.38  E-value=8e-08  Score=102.24  Aligned_cols=60  Identities=23%  Similarity=0.245  Sum_probs=32.9

Q ss_pred             cccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeE--eCCcCccceEEeeccC
Q 013265          154 FRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKV--SGPSLKLKHLKLNKLD  215 (446)
Q Consensus       154 ~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i--~~~~~~L~~L~i~~~~  215 (446)
                      +++|++|+|.++.+++. +...+.. +++|++|++.+|...+.+..  ...+++|++|.+.++.
T Consensus       293 ~~~L~~L~Ls~n~l~~~-~p~~~~~-l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~  354 (768)
T 3rgz_A          293 CDTLTGLDLSGNHFYGA-VPPFFGS-CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE  354 (768)
T ss_dssp             CTTCSEEECCSSEEEEC-CCGGGGG-CTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSE
T ss_pred             cCcCCEEECcCCcCCCc-cchHHhc-CCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCc
Confidence            47777777777665432 1122556 77777777776653322211  1233566666666553

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.36  E-value=1.1e-07  Score=101.06  Aligned_cols=64  Identities=23%  Similarity=0.211  Sum_probs=35.5

Q ss_pred             ccccccccceEEEEEEeChHHHH-HHHhcCCCCcceeeEeccCCCCce--eEeCCcCccceEEeeccC
Q 013265          151 YSSFRHLTDLSLTTVGITGEVLE-HLLCYCCPVLEVLNVAESSSLTSL--KVSGPSLKLKHLKLNKLD  215 (446)
Q Consensus       151 ~~~~~~L~~L~L~~~~~~~~~l~-~ll~~~cp~Le~L~L~~c~~~~~~--~i~~~~~~L~~L~i~~~~  215 (446)
                      ...+++|++|+|+++.+++.... .-+.. |++|++|++.+|......  .+...+++|++|+++++.
T Consensus        96 ~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~-l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~  162 (768)
T 3rgz_A           96 FKCSASLTSLDLSRNSLSGPVTTLTSLGS-CSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS  162 (768)
T ss_dssp             CCCCTTCCEEECCSSEEEEEGGGGGGGGG-CTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSC
T ss_pred             hccCCCCCEEECCCCcCCCcCCChHHHhC-CCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCc
Confidence            34667777777777666532111 12566 777777777766432221  111233566666666554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.36  E-value=1e-07  Score=98.57  Aligned_cols=229  Identities=16%  Similarity=0.053  Sum_probs=107.6

Q ss_pred             cccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCcee---EeCCcCccceEEeeccCCCCeEEE----EC
Q 013265          152 SSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLK---VSGPSLKLKHLKLNKLDNLKDLQL----HA  224 (446)
Q Consensus       152 ~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~---i~~~~~~L~~L~i~~~~~l~~~~i----~~  224 (446)
                      ..+++|++|.+.++.+........+.. +++|++|++.++.......   ....+++|++|.+.++. +..+..    ..
T Consensus       322 ~~l~~L~~L~l~~n~~~~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l  399 (606)
T 3t6q_A          322 SNFPSLTHLSIKGNTKRLELGTGCLEN-LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE-PLSLKTEAFKEC  399 (606)
T ss_dssp             GGCTTCSEEECCSCSSCCBCCSSTTTT-CTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCS-CEEECTTTTTTC
T ss_pred             hccCcCCEEECCCCCcccccchhhhhc-cCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCc-CCcCCHHHhcCC
Confidence            356677777777665442211122455 7777777777665432210   11233567777776664 322211    23


Q ss_pred             CceeEEEEccccc-----ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccC
Q 013265          225 PNLLSFEYSGPIL-----PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHD  299 (446)
Q Consensus       225 p~L~~l~~~~~~~-----~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~  299 (446)
                      ++|++|++.++..     +..+.++++|+.+++..+.......   ..+..+++|+.|++.++.+...     .......
T Consensus       400 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~L~~n~l~~~-----~~~~~~~  471 (606)
T 3t6q_A          400 PQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSE---QLFDGLPALQHLNLQGNHFPKG-----NIQKTNS  471 (606)
T ss_dssp             TTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCT---TTTTTCTTCCEEECTTCBCGGG-----EECSSCG
T ss_pred             ccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCH---HHHhCCCCCCEEECCCCCCCcc-----ccccchh
Confidence            6666666665532     1224556666666665553322222   3445566666666665432100     0001123


Q ss_pred             CCCCCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEEecccccc--c------------ccccccccCCCCccccc
Q 013265          300 IPEMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLVSQYDYE--S------------YESVKTIKDQPYLSFTE  365 (446)
Q Consensus       300 ~~~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~--~------------~~~~~~~p~c~~~~~~~  365 (446)
                      +..+++|++|++..+.-...   ....+..+|+|+.|++....-....  .            ...+...+.   ..+..
T Consensus       472 ~~~l~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~L~L~~N~l~~~~~---~~~~~  545 (606)
T 3t6q_A          472 LQTLGRLEILVLSFCDLSSI---DQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILP---SLLPI  545 (606)
T ss_dssp             GGGCTTCCEEECTTSCCCEE---CTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSCEEECCSSCCCCCCG---GGHHH
T ss_pred             hccCCCccEEECCCCccCcc---ChhhhccccCCCEEECCCCccCcCChhHhCcccccEEECcCCcccccCH---hhccc
Confidence            44556666666655531100   0112345566666666332100000  0            000000110   11223


Q ss_pred             cCCCcEEEEEe--eecCcchHHHHHHHHhcCcc
Q 013265          366 LRSIRVVELLG--FVGHTADFELVMYLIFSAKL  396 (446)
Q Consensus       366 l~~L~~v~i~~--~~g~~~e~~~~~~ll~~a~~  396 (446)
                      +.+|+++.+.|  +.+......++.++-++...
T Consensus       546 l~~L~~L~l~~N~~~c~c~~~~~~~w~~~~~~~  578 (606)
T 3t6q_A          546 LSQQRTINLRQNPLDCTCSNIYFLEWYKENMQK  578 (606)
T ss_dssp             HHTSSEEECTTCCEECSGGGHHHHHHHHHCGGG
T ss_pred             CCCCCEEeCCCCCccccCCcHHHHHHHHhCccc
Confidence            46677777766  45666666777776655433

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.36  E-value=6.5e-07  Score=78.33  Aligned_cols=148  Identities=14%  Similarity=0.096  Sum_probs=77.8

Q ss_pred             ccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeEeCCcCccceEEeeccCCCCeEEEECCceeEEEE
Q 013265          153 SFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQLHAPNLLSFEY  232 (446)
Q Consensus       153 ~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~l~~~~i~~p~L~~l~~  232 (446)
                      .+++|+.|++.+..+++-.   -+.. +++|++|++.+| ....+.....+++|++|.+.++. +..             
T Consensus        42 ~l~~L~~L~l~~n~i~~l~---~l~~-l~~L~~L~l~~n-~~~~~~~l~~l~~L~~L~l~~n~-l~~-------------  102 (197)
T 4ezg_A           42 QMNSLTYITLANINVTDLT---GIEY-AHNIKDLTINNI-HATNYNPISGLSNLERLRIMGKD-VTS-------------  102 (197)
T ss_dssp             HHHTCCEEEEESSCCSCCT---TGGG-CTTCSEEEEESC-CCSCCGGGTTCTTCCEEEEECTT-CBG-------------
T ss_pred             hcCCccEEeccCCCccChH---HHhc-CCCCCEEEccCC-CCCcchhhhcCCCCCEEEeECCc-cCc-------------
Confidence            5667777777776665311   1556 777777777777 22222211223445555554443 110             


Q ss_pred             cccccccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEE
Q 013265          233 SGPILPFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEII  312 (446)
Q Consensus       233 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~  312 (446)
                         ..+..+.++++|+.+++..+.......   ..+..+++|+.|.+.++...        ..++ .+..+++|++|.+.
T Consensus       103 ---~~~~~l~~l~~L~~L~Ls~n~i~~~~~---~~l~~l~~L~~L~L~~n~~i--------~~~~-~l~~l~~L~~L~l~  167 (197)
T 4ezg_A          103 ---DKIPNLSGLTSLTLLDISHSAHDDSIL---TKINTLPKVNSIDLSYNGAI--------TDIM-PLKTLPELKSLNIQ  167 (197)
T ss_dssp             ---GGSCCCTTCTTCCEEECCSSBCBGGGH---HHHTTCSSCCEEECCSCTBC--------CCCG-GGGGCSSCCEEECT
T ss_pred             ---ccChhhcCCCCCCEEEecCCccCcHhH---HHHhhCCCCCEEEccCCCCc--------cccH-hhcCCCCCCEEECC
Confidence               012234456666666666553322111   44566777777777774210        1111 34456777777776


Q ss_pred             ecCCCCCHHHHHHHHhhCCCceEEEEE
Q 013265          313 GTPKVNDLIFCIALLEAAPSLYKFSLK  339 (446)
Q Consensus       313 ~~~~~~~~~~l~~ll~~~p~L~~L~l~  339 (446)
                      .+.-. ++.    .+..+|+|+.|++.
T Consensus       168 ~n~i~-~~~----~l~~l~~L~~L~l~  189 (197)
T 4ezg_A          168 FDGVH-DYR----GIEDFPKLNQLYAF  189 (197)
T ss_dssp             TBCCC-CCT----TGGGCSSCCEEEEC
T ss_pred             CCCCc-ChH----HhccCCCCCEEEee
Confidence            66411 111    35667777777774

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.35  E-value=6.4e-08  Score=94.24  Aligned_cols=183  Identities=14%  Similarity=0.071  Sum_probs=122.8

Q ss_pred             cccccccceEEEEEEeChH---HHHHHHhcCCCCcceeeEeccCCCCc--eeEeC---Cc---------CccceEEeecc
Q 013265          152 SSFRHLTDLSLTTVGITGE---VLEHLLCYCCPVLEVLNVAESSSLTS--LKVSG---PS---------LKLKHLKLNKL  214 (446)
Q Consensus       152 ~~~~~L~~L~L~~~~~~~~---~l~~ll~~~cp~Le~L~L~~c~~~~~--~~i~~---~~---------~~L~~L~i~~~  214 (446)
                      ..+++|++|+|+++.+++.   .+...+.. |++|+.|+|.+|.....  ..+..   .+         ++|++|.+.++
T Consensus        91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~-~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n  169 (386)
T 2ca6_A           91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSK-HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN  169 (386)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHH-CTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred             hhCCcccEEECCCCcCCHHHHHHHHHHHHh-CCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC
Confidence            4678999999999988874   35566788 99999999999864211  01111   11         68999999988


Q ss_pred             CCCC--eEE------EECCceeEEEEcccccc---------cccCCCCCcceEEecccchhhh-hhhhhhhhccCCCceE
Q 013265          215 DNLK--DLQ------LHAPNLLSFEYSGPILP---------FSFRNVPNLVDASFWGCFSAYI-AKNLCQHSIFLVQLHT  276 (446)
Q Consensus       215 ~~l~--~~~------i~~p~L~~l~~~~~~~~---------~~~~~~~~L~~l~l~~~~~~~~-~~~l~~~l~~l~~l~~  276 (446)
                      . +.  .+.      -..++|++|.+.++...         ..+.++++|+.+++..+.+... ...+...+..+++|+.
T Consensus       170 ~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~  248 (386)
T 2ca6_A          170 R-LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE  248 (386)
T ss_dssp             C-CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCE
T ss_pred             C-CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCE
Confidence            6 43  111      14579999999887543         1566889999999987754321 2334467788999999


Q ss_pred             EEEeecccccccchhcccccccCC--CCCCcccEEEEEecCCCC-CHHHHHHHH-hhCCCceEEEEEE
Q 013265          277 LKLDTCHLLIGDSEYRAGRYLHDI--PEMCNLKHLEIIGTPKVN-DLIFCIALL-EAAPSLYKFSLKL  340 (446)
Q Consensus       277 L~L~~~~~~~~~~~~~~~~~~~~~--~~~~~L~~L~L~~~~~~~-~~~~l~~ll-~~~p~L~~L~l~~  340 (446)
                      |.|+++.+..    .....++..+  ..+++|++|.|..+.-.. ....+...+ .++|+|+.|++..
T Consensus       249 L~L~~n~i~~----~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~  312 (386)
T 2ca6_A          249 LGLNDCLLSA----RGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNG  312 (386)
T ss_dssp             EECTTCCCCH----HHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred             EECCCCCCch----hhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccC
Confidence            9999864421    1111122333  337899999999885222 122355555 6689999999954

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.35  E-value=4.1e-07  Score=84.93  Aligned_cols=195  Identities=19%  Similarity=0.095  Sum_probs=104.4

Q ss_pred             ccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeEeCCcCccceEEeeccCCCCeEEEECCceeEEEEcc
Q 013265          155 RHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQLHAPNLLSFEYSG  234 (446)
Q Consensus       155 ~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~l~~~~i~~p~L~~l~~~~  234 (446)
                      ++|+.|+|.+..++.-. ...+.. ++.|+.|.+.++... .+.....+++|+.|.++++. +..               
T Consensus        31 ~~l~~L~L~~N~l~~~~-~~~~~~-l~~L~~L~L~~n~l~-~~~~~~~l~~L~~L~Ls~N~-l~~---------------   91 (290)
T 1p9a_G           31 KDTTILHLSENLLYTFS-LATLMP-YTRLTQLNLDRAELT-KLQVDGTLPVLGTLDLSHNQ-LQS---------------   91 (290)
T ss_dssp             TTCCEEECTTSCCSEEE-GGGGTT-CTTCCEEECTTSCCC-EEECCSCCTTCCEEECCSSC-CSS---------------
T ss_pred             CCCCEEEcCCCcCCccC-HHHhhc-CCCCCEEECCCCccC-cccCCCCCCcCCEEECCCCc-CCc---------------
Confidence            56777777766554321 122556 777777777765422 22111333455555555443 221               


Q ss_pred             cccccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEEec
Q 013265          235 PILPFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGT  314 (446)
Q Consensus       235 ~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~  314 (446)
                        .+..+.++++|+.+++..+.+.....   ..+..+++|+.|.+.++.+.        ...+..+..+++|+.|.|..+
T Consensus        92 --l~~~~~~l~~L~~L~l~~N~l~~l~~---~~~~~l~~L~~L~L~~N~l~--------~~~~~~~~~l~~L~~L~L~~N  158 (290)
T 1p9a_G           92 --LPLLGQTLPALTVLDVSFNRLTSLPL---GALRGLGELQELYLKGNELK--------TLPPGLLTPTPKLEKLSLANN  158 (290)
T ss_dssp             --CCCCTTTCTTCCEEECCSSCCCCCCS---STTTTCTTCCEEECTTSCCC--------CCCTTTTTTCTTCCEEECTTS
T ss_pred             --CchhhccCCCCCEEECCCCcCcccCH---HHHcCCCCCCEEECCCCCCC--------ccChhhcccccCCCEEECCCC
Confidence              12234566777777776553322211   34566778888887774221        111223456678888888776


Q ss_pred             CCCCCHHHHHHHHhhCCCceEEEEEEecccccccccccccccCCCCccccccCCCcEEEEEe--eecCcchHHHHHHHHh
Q 013265          315 PKVNDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTIKDQPYLSFTELRSIRVVELLG--FVGHTADFELVMYLIF  392 (446)
Q Consensus       315 ~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~p~c~~~~~~~l~~L~~v~i~~--~~g~~~e~~~~~~ll~  392 (446)
                      .-. .+.  ..++...++|+.|++...         .+..+|....    .+.+|+.+.+.|  +...+.-..+..++-+
T Consensus       159 ~l~-~l~--~~~~~~l~~L~~L~L~~N---------~l~~ip~~~~----~~~~L~~l~L~~Np~~C~c~~~~l~~wl~~  222 (290)
T 1p9a_G          159 NLT-ELP--AGLLNGLENLDTLLLQEN---------SLYTIPKGFF----GSHLLPFAFLHGNPWLCNCEILYFRRWLQD  222 (290)
T ss_dssp             CCS-CCC--TTTTTTCTTCCEEECCSS---------CCCCCCTTTT----TTCCCSEEECCSCCBCCSGGGHHHHHHHHH
T ss_pred             cCC-ccC--HHHhcCcCCCCEEECCCC---------cCCccChhhc----ccccCCeEEeCCCCccCcCccHHHHHHHHh
Confidence            411 110  123566788888888432         2223343322    236788888887  4445555667777766


Q ss_pred             cCccc
Q 013265          393 SAKLL  397 (446)
Q Consensus       393 ~a~~L  397 (446)
                      +....
T Consensus       223 ~~~~~  227 (290)
T 1p9a_G          223 NAENV  227 (290)
T ss_dssp             TGGGB
T ss_pred             Ccccc
Confidence            65433

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.34  E-value=2.7e-07  Score=89.92  Aligned_cols=101  Identities=21%  Similarity=0.203  Sum_probs=58.4

Q ss_pred             cccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCce-eEeCCcCccceEEeeccCCCCeEEE----ECCc
Q 013265          152 SSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSL-KVSGPSLKLKHLKLNKLDNLKDLQL----HAPN  226 (446)
Q Consensus       152 ~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~-~i~~~~~~L~~L~i~~~~~l~~~~i----~~p~  226 (446)
                      ..+++|++|+|.+..+++-.. ..+.. +++|++|++.++...... ..-..+++|++|.+.++. +..+..    ..++
T Consensus        66 ~~l~~L~~L~L~~n~i~~~~~-~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~  142 (390)
T 3o6n_A           66 DSFRQVELLNLNDLQIEEIDT-YAFAY-AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPK  142 (390)
T ss_dssp             HHCCCCSEEECTTSCCCEECT-TTTTT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTT
T ss_pred             cccccCcEEECCCCcccccCh-hhccC-CCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCc-cCcCCHHHhcCCCC
Confidence            346777777777665543211 12456 777777777776533221 111234677777777765 443321    2467


Q ss_pred             eeEEEEccccc----ccccCCCCCcceEEeccc
Q 013265          227 LLSFEYSGPIL----PFSFRNVPNLVDASFWGC  255 (446)
Q Consensus       227 L~~l~~~~~~~----~~~~~~~~~L~~l~l~~~  255 (446)
                      |++|++.++..    +..+.++++|+.+++..+
T Consensus       143 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n  175 (390)
T 3o6n_A          143 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN  175 (390)
T ss_dssp             CCEEECCSSCCCBCCTTTTSSCTTCCEEECCSS
T ss_pred             CcEEECCCCccCccChhhccCCCCCCEEECCCC
Confidence            77777776632    223566777777777655

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.33  E-value=3.2e-07  Score=91.22  Aligned_cols=41  Identities=15%  Similarity=0.150  Sum_probs=28.9

Q ss_pred             ccccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccC
Q 013265          151 YSSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESS  192 (446)
Q Consensus       151 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~  192 (446)
                      ...+++|++|+|.++.+++.....++.+ +++|++|++.++.
T Consensus       125 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~-l~~L~~L~L~~n~  165 (455)
T 3v47_A          125 FKPLTSLEMLVLRDNNIKKIQPASFFLN-MRRFHVLDLTFNK  165 (455)
T ss_dssp             TTTCTTCCEEECCSSBCCSCCCCGGGGG-CTTCCEEECTTCC
T ss_pred             ccCcccCCEEECCCCccCccCcccccCC-CCcccEEeCCCCc
Confidence            3457888888888877665433334667 8888888888765

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.33  E-value=2.3e-07  Score=87.11  Aligned_cols=219  Identities=14%  Similarity=0.067  Sum_probs=140.9

Q ss_pred             cccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeE---eCCcCccceEEeeccCCCCeEE---EECCce
Q 013265          154 FRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKV---SGPSLKLKHLKLNKLDNLKDLQ---LHAPNL  227 (446)
Q Consensus       154 ~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i---~~~~~~L~~L~i~~~~~l~~~~---i~~p~L  227 (446)
                      .++|++|+|.+..+++- -...+.. +++|++|++.++.....-.+   ...+++|++|.++++. +..+.   ...++|
T Consensus        27 ~~~l~~L~L~~n~l~~i-~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~~l~~L  103 (306)
T 2z66_A           27 PSSATRLELESNKLQSL-PHGVFDK-LTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQL  103 (306)
T ss_dssp             CTTCCEEECCSSCCCCC-CTTTTTT-CTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEEETCTTC
T ss_pred             CCCCCEEECCCCccCcc-CHhHhhc-cccCCEEECCCCccCcccCcccccccccccCEEECCCCc-cccChhhcCCCCCC
Confidence            36899999998877632 1234678 99999999998864321111   1134789999999986 54442   236999


Q ss_pred             eEEEEccccc---c--cccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCC
Q 013265          228 LSFEYSGPIL---P--FSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPE  302 (446)
Q Consensus       228 ~~l~~~~~~~---~--~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~  302 (446)
                      ++|++.+...   +  ..+.++++|+.+++..+.......   ..+..+++|+.|.+.++.+       .....+..+..
T Consensus       104 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l-------~~~~~~~~~~~  173 (306)
T 2z66_A          104 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN---GIFNGLSSLEVLKMAGNSF-------QENFLPDIFTE  173 (306)
T ss_dssp             CEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECST---TTTTTCTTCCEEECTTCEE-------GGGEECSCCTT
T ss_pred             CEEECCCCcccccccchhhhhccCCCEEECCCCcCCccch---hhcccCcCCCEEECCCCcc-------ccccchhHHhh
Confidence            9999988732   1  356788999999998764332222   5567889999999988432       11234566778


Q ss_pred             CCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEEecccccccccccccccCCCCccccccCCCcEEEEEeee--cC
Q 013265          303 MCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTIKDQPYLSFTELRSIRVVELLGFV--GH  380 (446)
Q Consensus       303 ~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~p~c~~~~~~~l~~L~~v~i~~~~--g~  380 (446)
                      +++|++|++..+.-...   ....+..+|+|+.|++...   ....      .+..   .+..+.+|+++.+.+-.  +.
T Consensus       174 l~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~L~~N---~l~~------~~~~---~~~~l~~L~~L~L~~N~l~~~  238 (306)
T 2z66_A          174 LRNLTFLDLSQCQLEQL---SPTAFNSLSSLQVLNMSHN---NFFS------LDTF---PYKCLNSLQVLDYSLNHIMTS  238 (306)
T ss_dssp             CTTCCEEECTTSCCCEE---CTTTTTTCTTCCEEECTTS---CCSB------CCSG---GGTTCTTCCEEECTTSCCCBC
T ss_pred             CcCCCEEECCCCCcCCc---CHHHhcCCCCCCEEECCCC---ccCc------cChh---hccCcccCCEeECCCCCCccc
Confidence            89999999988741111   0123577899999999432   2111      1110   01124789999998643  22


Q ss_pred             cchHHHHHHHHhcC-ccccceEEecCC
Q 013265          381 TADFELVMYLIFSA-KLLEKIIIDPCP  406 (446)
Q Consensus       381 ~~e~~~~~~ll~~a-~~Le~l~i~~~~  406 (446)
                      ..+ .     +.+. +.|+.+.+....
T Consensus       239 ~~~-~-----~~~~~~~L~~L~L~~N~  259 (306)
T 2z66_A          239 KKQ-E-----LQHFPSSLAFLNLTQND  259 (306)
T ss_dssp             SSS-S-----CCCCCTTCCEEECTTCC
T ss_pred             CHH-H-----HHhhhccCCEEEccCCC
Confidence            111 1     1334 488888887554

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.31  E-value=1.1e-06  Score=88.92  Aligned_cols=220  Identities=12%  Similarity=0.136  Sum_probs=129.0

Q ss_pred             cccccccceEEEEEEeChHHHHHHHhc-CCCCcceeeEeccCCCCce--eEe----CCcCc-------------------
Q 013265          152 SSFRHLTDLSLTTVGITGEVLEHLLCY-CCPVLEVLNVAESSSLTSL--KVS----GPSLK-------------------  205 (446)
Q Consensus       152 ~~~~~L~~L~L~~~~~~~~~l~~ll~~-~cp~Le~L~L~~c~~~~~~--~i~----~~~~~-------------------  205 (446)
                      ..+++|+.|.+.++.+++..+..+... .+++|++|++.+|...+.+  .+.    ..+++                   
T Consensus       217 ~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~  296 (520)
T 2z7x_B          217 QTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIY  296 (520)
T ss_dssp             GGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHH
T ss_pred             ccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhh
Confidence            457788888888888887665554432 1678999999887532111  110    12233                   


Q ss_pred             -------cceEEeeccCCCCeEE--EECCceeEEEEccccc----ccccCCCCCcceEEecccchhhhhhhhhhhhccCC
Q 013265          206 -------LKHLKLNKLDNLKDLQ--LHAPNLLSFEYSGPIL----PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLV  272 (446)
Q Consensus       206 -------L~~L~i~~~~~l~~~~--i~~p~L~~l~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~  272 (446)
                             |+.|.+.++. +..+.  -..++|++|+++++..    +..+.++++|+.+++..+..... ..+...+..++
T Consensus       297 ~~~~~~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-~~~~~~~~~l~  374 (520)
T 2z7x_B          297 EIFSNMNIKNFTVSGTR-MVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKEL-SKIAEMTTQMK  374 (520)
T ss_dssp             HHHHTCCCSEEEEESSC-CCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBH-HHHHHHHTTCT
T ss_pred             cccccCceeEEEcCCCc-cccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCcc-ccchHHHhhCC
Confidence                   4444454443 22222  2457788888877632    34556788888888876643311 12224567788


Q ss_pred             CceEEEEeecccccccchhcccccc-cCCCCCCcccEEEEEecCCCCCHHHHHHHHhhC-CCceEEEEEEeccccccccc
Q 013265          273 QLHTLKLDTCHLLIGDSEYRAGRYL-HDIPEMCNLKHLEIIGTPKVNDLIFCIALLEAA-PSLYKFSLKLVSQYDYESYE  350 (446)
Q Consensus       273 ~l~~L~L~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~~~l~~ll~~~-p~L~~L~l~~~~~~~~~~~~  350 (446)
                      +|+.|+++++.+..        .++ ..+..+++|++|.+..+.-....      .... ++|+.|+++..         
T Consensus       375 ~L~~L~Ls~N~l~~--------~l~~~~~~~l~~L~~L~Ls~N~l~~~~------~~~l~~~L~~L~Ls~N---------  431 (520)
T 2z7x_B          375 SLQQLDISQNSVSY--------DEKKGDCSWTKSLLSLNMSSNILTDTI------FRCLPPRIKVLDLHSN---------  431 (520)
T ss_dssp             TCCEEECCSSCCBC--------CGGGCSCCCCTTCCEEECCSSCCCGGG------GGSCCTTCCEEECCSS---------
T ss_pred             CCCEEECCCCcCCc--------ccccchhccCccCCEEECcCCCCCcch------hhhhcccCCEEECCCC---------
Confidence            88888888753321        011 13456688888888877422211      1222 68888888432         


Q ss_pred             ccccccCCCCccccccCCCcEEEEEeee--cCcchHHHHHHHHhcCccccceEEecCC
Q 013265          351 SVKTIKDQPYLSFTELRSIRVVELLGFV--GHTADFELVMYLIFSAKLLEKIIIDPCP  406 (446)
Q Consensus       351 ~~~~~p~c~~~~~~~l~~L~~v~i~~~~--g~~~e~~~~~~ll~~a~~Le~l~i~~~~  406 (446)
                      .+..+|....    .+.+|+++.+.+..  +...+      .+.+.+.|+.+.+....
T Consensus       432 ~l~~ip~~~~----~l~~L~~L~L~~N~l~~l~~~------~~~~l~~L~~L~l~~N~  479 (520)
T 2z7x_B          432 KIKSIPKQVV----KLEALQELNVASNQLKSVPDG------IFDRLTSLQKIWLHTNP  479 (520)
T ss_dssp             CCCCCCGGGG----GCTTCCEEECCSSCCCCCCTT------TTTTCTTCCEEECCSSC
T ss_pred             cccccchhhh----cCCCCCEEECCCCcCCccCHH------HhccCCcccEEECcCCC
Confidence            1222343221    45889999998743  22222      34678899999988654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.28  E-value=8.3e-08  Score=102.61  Aligned_cols=13  Identities=8%  Similarity=-0.054  Sum_probs=7.9

Q ss_pred             ccCCCcEEEEEee
Q 013265          365 ELRSIRVVELLGF  377 (446)
Q Consensus       365 ~l~~L~~v~i~~~  377 (446)
                      .+.+|+.+.+.+.
T Consensus       804 ~L~~L~~L~Ls~N  816 (876)
T 4ecn_A          804 TCPSLIQLQIGSN  816 (876)
T ss_dssp             GCSSCCEEECCSS
T ss_pred             cCCCCCEEECCCC
Confidence            3466777766653

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.27  E-value=2.8e-07  Score=85.15  Aligned_cols=36  Identities=14%  Similarity=0.033  Sum_probs=18.6

Q ss_pred             ccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccC
Q 013265          153 SFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESS  192 (446)
Q Consensus       153 ~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~  192 (446)
                      .+++|++|+|.++.+++-  . .+.. +++|++|++.+|.
T Consensus        61 ~l~~L~~L~l~~n~l~~~--~-~l~~-l~~L~~L~L~~n~   96 (272)
T 3rfs_A           61 YLPNVRYLALGGNKLHDI--S-ALKE-LTNLTYLILTGNQ   96 (272)
T ss_dssp             GCTTCCEEECTTSCCCCC--G-GGTT-CTTCCEEECTTSC
T ss_pred             cCCCCcEEECCCCCCCCc--h-hhcC-CCCCCEEECCCCc
Confidence            455566666655554431  1 2344 5566666665553

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.25  E-value=2e-06  Score=80.97  Aligned_cols=208  Identities=16%  Similarity=0.082  Sum_probs=110.3

Q ss_pred             cceEEEEEecCCcchHHHHHHHHHHcCCcEEEEeeeccccccccccccccccccCCccccccccceEEEEEEeChH--HH
Q 013265           95 TEELRICFDVFSNHDIDNWIKFALERRVRRLELDFSRVVYNLRFVGQYTFPSHLDFYSSFRHLTDLSLTTVGITGE--VL  172 (446)
Q Consensus        95 l~~l~l~~~~~~~~~~~~wi~~~~~~~l~~L~l~~~~~~~~~~~~~~~~lp~~~~~~~~~~~L~~L~L~~~~~~~~--~l  172 (446)
                      ++++.+.-.......+...........+++|.+......        -..|..++. ..+++|++|+|+++.+++.  .+
T Consensus        66 l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~--------~~~~~~~~~-~~~~~L~~L~Ls~n~i~~~~~~~  136 (310)
T 4glp_A           66 VRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKIT--------GTMPPLPLE-ATGLALSSLRLRNVSWATGRSWL  136 (310)
T ss_dssp             CCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCB--------SCCCCCSSS-CCCBCCSSCEEESCCCSSTTSSH
T ss_pred             eeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEec--------cchhhhhhh-ccCCCCCEEEeecccccchhhhh
Confidence            555555321111225555566655668999998654311        123333221 5789999999999998752  11


Q ss_pred             H-HHHhcCCCCcceeeEeccCCCCce-eEeCCcCccceEEeeccCCCCeEEEECCceeEEEEcccccccccCCCCCcceE
Q 013265          173 E-HLLCYCCPVLEVLNVAESSSLTSL-KVSGPSLKLKHLKLNKLDNLKDLQLHAPNLLSFEYSGPILPFSFRNVPNLVDA  250 (446)
Q Consensus       173 ~-~ll~~~cp~Le~L~L~~c~~~~~~-~i~~~~~~L~~L~i~~~~~l~~~~i~~p~L~~l~~~~~~~~~~~~~~~~L~~l  250 (446)
                      . .-+.. +++|++|++.++...... .....+++|++|.++++.-.....             ......+.++++|+.+
T Consensus       137 ~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-------------~~~~~~~~~l~~L~~L  202 (310)
T 4glp_A          137 AELQQWL-KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERG-------------LMAALCPHKFPAIQNL  202 (310)
T ss_dssp             HHHHTTB-CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHH-------------HHTTSCTTSSCCCCSC
T ss_pred             HHHHhhh-ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchh-------------hhHHHhhhcCCCCCEE
Confidence            1 22447 999999999988653322 111233566666666654110000             0001123466777777


Q ss_pred             EecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCC---CcccEEEEEecCCCCCHHHHHHHH
Q 013265          251 SFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEM---CNLKHLEIIGTPKVNDLIFCIALL  327 (446)
Q Consensus       251 ~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~---~~L~~L~L~~~~~~~~~~~l~~ll  327 (446)
                      ++..+...........++..+++|+.|+++++.+..        ..+..+..+   ++|++|.|+.+.-. .++.     
T Consensus       203 ~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~--------~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~-----  268 (310)
T 4glp_A          203 ALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRA--------TVNPSAPRCMWSSALNSLNLSFAGLE-QVPK-----  268 (310)
T ss_dssp             BCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCC--------CCCSCCSSCCCCTTCCCEECCSSCCC-SCCS-----
T ss_pred             ECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCc--------cchhhHHhccCcCcCCEEECCCCCCC-chhh-----
Confidence            776654321111111345677888888887743311        112222333   67888888776411 1110     


Q ss_pred             hhCCCceEEEEE
Q 013265          328 EAAPSLYKFSLK  339 (446)
Q Consensus       328 ~~~p~L~~L~l~  339 (446)
                      .-+++|+.|++.
T Consensus       269 ~~~~~L~~L~Ls  280 (310)
T 4glp_A          269 GLPAKLRVLDLS  280 (310)
T ss_dssp             CCCSCCSCEECC
T ss_pred             hhcCCCCEEECC
Confidence            013677777774

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.25  E-value=1.5e-07  Score=97.23  Aligned_cols=83  Identities=16%  Similarity=0.038  Sum_probs=42.6

Q ss_pred             cCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEEecCCCCCH
Q 013265          241 FRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTPKVNDL  320 (446)
Q Consensus       241 ~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~  320 (446)
                      +.++++|+.++++.+.+.....   ..+..+++|+.|.|.++.+         ..++.....+++|+.|+|..+.-. . 
T Consensus       250 l~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~Ls~N~l---------~~l~~~~~~l~~L~~L~Ls~N~l~-~-  315 (597)
T 3oja_B          250 LLNYPGLVEVDLSYNELEKIMY---HPFVKMQRLERLYISNNRL---------VALNLYGQPIPTLKVLDLSHNHLL-H-  315 (597)
T ss_dssp             GGGCTTCSEEECCSSCCCEEES---GGGTTCSSCCEEECTTSCC---------CEEECSSSCCTTCCEEECCSSCCC-C-
T ss_pred             hccCCCCCEEECCCCccCCCCH---HHhcCccCCCEEECCCCCC---------CCCCcccccCCCCcEEECCCCCCC-c-
Confidence            4455566666665543222111   3345566666666665322         112333445677777777776421 1 


Q ss_pred             HHHHHHHhhCCCceEEEEE
Q 013265          321 IFCIALLEAAPSLYKFSLK  339 (446)
Q Consensus       321 ~~l~~ll~~~p~L~~L~l~  339 (446)
                        +..-+..+|+|+.|++.
T Consensus       316 --i~~~~~~l~~L~~L~L~  332 (597)
T 3oja_B          316 --VERNQPQFDRLENLYLD  332 (597)
T ss_dssp             --CGGGHHHHTTCSEEECC
T ss_pred             --cCcccccCCCCCEEECC
Confidence              11123556777777774

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.25  E-value=2.4e-07  Score=88.09  Aligned_cols=165  Identities=16%  Similarity=0.135  Sum_probs=69.7

Q ss_pred             ccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeEeCCcCccceEEeeccCCCCeEEE----ECCcee
Q 013265          153 SFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQL----HAPNLL  228 (446)
Q Consensus       153 ~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~l~~~~i----~~p~L~  228 (446)
                      ++++|++|+|.++.+++-. ...+.. +++|++|++.++... .+..... ++|++|.+.++. +..+..    ..++|+
T Consensus        74 ~l~~L~~L~L~~n~l~~~~-~~~~~~-l~~L~~L~Ls~n~l~-~l~~~~~-~~L~~L~l~~n~-l~~~~~~~~~~l~~L~  148 (330)
T 1xku_A           74 NLKNLHTLILINNKISKIS-PGAFAP-LVKLERLYLSKNQLK-ELPEKMP-KTLQELRVHENE-ITKVRKSVFNGLNQMI  148 (330)
T ss_dssp             TCTTCCEEECCSSCCCCBC-TTTTTT-CTTCCEEECCSSCCS-BCCSSCC-TTCCEEECCSSC-CCBBCHHHHTTCTTCC
T ss_pred             cCCCCCEEECCCCcCCeeC-HHHhcC-CCCCCEEECCCCcCC-ccChhhc-ccccEEECCCCc-ccccCHhHhcCCcccc
Confidence            4556666666655443210 112344 666666666555322 1110111 455555555553 222211    135555


Q ss_pred             EEEEccccc------ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCC
Q 013265          229 SFEYSGPIL------PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPE  302 (446)
Q Consensus       229 ~l~~~~~~~------~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~  302 (446)
                      .|++.+...      +..+.++++|+.+++..+.......      ...++|+.|++.++.+.        ...+..+..
T Consensus       149 ~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~------~~~~~L~~L~l~~n~l~--------~~~~~~~~~  214 (330)
T 1xku_A          149 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ------GLPPSLTELHLDGNKIT--------KVDAASLKG  214 (330)
T ss_dssp             EEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCS------SCCTTCSEEECTTSCCC--------EECTGGGTT
T ss_pred             EEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCc------cccccCCEEECCCCcCC--------ccCHHHhcC
Confidence            555554422      1223445555555554432211100      01145555555542110        011223445


Q ss_pred             CCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEE
Q 013265          303 MCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLK  339 (446)
Q Consensus       303 ~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~  339 (446)
                      +++|++|++..+.-....   ...+..+|+|+.|++.
T Consensus       215 l~~L~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~L~  248 (330)
T 1xku_A          215 LNNLAKLGLSFNSISAVD---NGSLANTPHLRELHLN  248 (330)
T ss_dssp             CTTCCEEECCSSCCCEEC---TTTGGGSTTCCEEECC
T ss_pred             CCCCCEEECCCCcCceeC---hhhccCCCCCCEEECC
Confidence            566666666655311000   0123556666666663

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.24  E-value=7.8e-07  Score=86.60  Aligned_cols=168  Identities=14%  Similarity=0.044  Sum_probs=87.7

Q ss_pred             cccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeEeCCcCccceEEeeccCC---------------
Q 013265          152 SSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDN---------------  216 (446)
Q Consensus       152 ~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~---------------  216 (446)
                      ..+++|++|+|.+..++... ...+.. +++|++|++.++.... +.+ ...++|+.|.+.++.-               
T Consensus       138 ~~l~~L~~L~L~~n~l~~~~-~~~~~~-l~~L~~L~l~~n~l~~-~~~-~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~  213 (390)
T 3o6n_A          138 HNTPKLTTLSMSNNNLERIE-DDTFQA-TTSLQNLQLSSNRLTH-VDL-SLIPSLFHANVSYNLLSTLAIPIAVEELDAS  213 (390)
T ss_dssp             TTCTTCCEEECCSSCCCBCC-TTTTSS-CTTCCEEECCSSCCSB-CCG-GGCTTCSEEECCSSCCSEEECCSSCSEEECC
T ss_pred             cCCCCCcEEECCCCccCccC-hhhccC-CCCCCEEECCCCcCCc-ccc-ccccccceeecccccccccCCCCcceEEECC
Confidence            45788888888877665321 123566 8888888888765322 111 1124455555544430               


Q ss_pred             ---CCeEEEE-CCceeEEEEccccc--ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccch
Q 013265          217 ---LKDLQLH-APNLLSFEYSGPIL--PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSE  290 (446)
Q Consensus       217 ---l~~~~i~-~p~L~~l~~~~~~~--~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~  290 (446)
                         +..+... .++|+.|++.++..  ...+.++++|+++++..+.......   ..+..+++|+.|.+.++.+.     
T Consensus       214 ~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~L~~n~l~-----  285 (390)
T 3o6n_A          214 HNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMY---HPFVKMQRLERLYISNNRLV-----  285 (390)
T ss_dssp             SSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEES---GGGTTCSSCCEEECCSSCCC-----
T ss_pred             CCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcCh---hHccccccCCEEECCCCcCc-----
Confidence               2222111 24566666555532  1234556667777666553322211   34456667777777663221     


Q ss_pred             hcccccccCCCCCCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEE
Q 013265          291 YRAGRYLHDIPEMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLK  339 (446)
Q Consensus       291 ~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~  339 (446)
                          .++.....+++|++|++..+.-. .   +..-+..+|+|+.|++.
T Consensus       286 ----~~~~~~~~l~~L~~L~L~~n~l~-~---~~~~~~~l~~L~~L~L~  326 (390)
T 3o6n_A          286 ----ALNLYGQPIPTLKVLDLSHNHLL-H---VERNQPQFDRLENLYLD  326 (390)
T ss_dssp             ----EEECSSSCCTTCCEEECCSSCCC-C---CGGGHHHHTTCSEEECC
T ss_pred             ----ccCcccCCCCCCCEEECCCCcce-e---cCccccccCcCCEEECC
Confidence                12223345677777777766411 1   11123456777777774

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.23  E-value=3.5e-07  Score=88.19  Aligned_cols=178  Identities=12%  Similarity=0.095  Sum_probs=84.8

Q ss_pred             cccceEEEEEEeChH---HHHHHHhcCCC-CcceeeEeccCCCCc-e-eEe----CCcCccceEEeeccCCCCeEEE---
Q 013265          156 HLTDLSLTTVGITGE---VLEHLLCYCCP-VLEVLNVAESSSLTS-L-KVS----GPSLKLKHLKLNKLDNLKDLQL---  222 (446)
Q Consensus       156 ~L~~L~L~~~~~~~~---~l~~ll~~~cp-~Le~L~L~~c~~~~~-~-~i~----~~~~~L~~L~i~~~~~l~~~~i---  222 (446)
                      +|++|+|+++.+++.   .+...+.. +| .|++|+|.+|..... . .+.    ..+++|++|.+++|. +.....   
T Consensus        23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~-~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l  100 (362)
T 3goz_A           23 GVTSLDLSLNNLYSISTVELIQAFAN-TPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF-LSYKSSDEL  100 (362)
T ss_dssp             TCCEEECTTSCGGGSCHHHHHHHHHT-CCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHH
T ss_pred             CceEEEccCCCCChHHHHHHHHHHHh-CCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc-CChHHHHHH
Confidence            466777766665543   23344556 66 677777766642211 0 111    111567777776665 332211   


Q ss_pred             -----EC-CceeEEEEccccccc--------ccCC-CCCcceEEecccchhh-hhhhhhhhhccCC-CceEEEEeecccc
Q 013265          223 -----HA-PNLLSFEYSGPILPF--------SFRN-VPNLVDASFWGCFSAY-IAKNLCQHSIFLV-QLHTLKLDTCHLL  285 (446)
Q Consensus       223 -----~~-p~L~~l~~~~~~~~~--------~~~~-~~~L~~l~l~~~~~~~-~~~~l~~~l~~l~-~l~~L~L~~~~~~  285 (446)
                           .. ++|++|++.++....        .+.. ..+|++++++.+.+.. ....+...+..++ +|+.|+++++.+.
T Consensus       101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~  180 (362)
T 3goz_A          101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA  180 (362)
T ss_dssp             HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred             HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence                 11 567777666653211        0122 2466777766553331 1122334444444 6777777664332


Q ss_pred             cccchhcccccccCCCCC-CcccEEEEEecC-CCCCHHHHHHHHhh-CCCceEEEEE
Q 013265          286 IGDSEYRAGRYLHDIPEM-CNLKHLEIIGTP-KVNDLIFCIALLEA-APSLYKFSLK  339 (446)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~-~~L~~L~L~~~~-~~~~~~~l~~ll~~-~p~L~~L~l~  339 (446)
                      ..    ....+...+..+ ++|++|+|+.+. .......+...+.. +++|++|++.
T Consensus       181 ~~----~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls  233 (362)
T 3goz_A          181 SK----NCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLC  233 (362)
T ss_dssp             GS----CHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECC
T ss_pred             hh----hHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECc
Confidence            11    001111122233 367777776664 22233345555555 4467777664

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.22  E-value=1.7e-06  Score=78.07  Aligned_cols=169  Identities=13%  Similarity=0.022  Sum_probs=98.9

Q ss_pred             ccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCcee--EeCCcCccceEEeeccCCCCeEE----EECCcee
Q 013265          155 RHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLK--VSGPSLKLKHLKLNKLDNLKDLQ----LHAPNLL  228 (446)
Q Consensus       155 ~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~--i~~~~~~L~~L~i~~~~~l~~~~----i~~p~L~  228 (446)
                      ++|++|+|.+..++.-. ...+.+ +++|+.|++.++..++.+.  ....+++|++|.+.+|..+..+.    -..++|+
T Consensus        31 ~~l~~L~l~~n~l~~i~-~~~~~~-l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~  108 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIP-SHAFSN-LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK  108 (239)
T ss_dssp             TTCCEEEEESCCCSEEC-TTTTTT-CTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred             CcccEEEEeCCcceEEC-HHHccC-CCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence            37888888887665321 113566 8888888888886443332  11234788888888744465543    2457888


Q ss_pred             EEEEcccccc--cccCCCCCcc---eEEeccc-chhhhhhhhhhhhccCCCce-EEEEeecccccccchhcccccccCCC
Q 013265          229 SFEYSGPILP--FSFRNVPNLV---DASFWGC-FSAYIAKNLCQHSIFLVQLH-TLKLDTCHLLIGDSEYRAGRYLHDIP  301 (446)
Q Consensus       229 ~l~~~~~~~~--~~~~~~~~L~---~l~l~~~-~~~~~~~~l~~~l~~l~~l~-~L~L~~~~~~~~~~~~~~~~~~~~~~  301 (446)
                      +|++.++...  -.+.++++|+   .+++..+ .......   ..+..+++++ .|++.++.+.         .++....
T Consensus       109 ~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~---~~~~~l~~L~~~L~l~~n~l~---------~i~~~~~  176 (239)
T 2xwt_C          109 FLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPV---NAFQGLCNETLTLKLYNNGFT---------SVQGYAF  176 (239)
T ss_dssp             EEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECT---TTTTTTBSSEEEEECCSCCCC---------EECTTTT
T ss_pred             EEeCCCCCCccccccccccccccccEEECCCCcchhhcCc---ccccchhcceeEEEcCCCCCc---------ccCHhhc
Confidence            8888776321  1155666676   7887665 3332222   3456788888 8888764221         1122211


Q ss_pred             CCCcccEEEEEecCCCCCHHHHHHHHhhC-CCceEEEEE
Q 013265          302 EMCNLKHLEIIGTPKVNDLIFCIALLEAA-PSLYKFSLK  339 (446)
Q Consensus       302 ~~~~L~~L~L~~~~~~~~~~~l~~ll~~~-p~L~~L~l~  339 (446)
                      ..++|++|.+..+.....+.  ...+..+ ++|+.|++.
T Consensus       177 ~~~~L~~L~L~~n~~l~~i~--~~~~~~l~~~L~~L~l~  213 (239)
T 2xwt_C          177 NGTKLDAVYLNKNKYLTVID--KDAFGGVYSGPSLLDVS  213 (239)
T ss_dssp             TTCEEEEEECTTCTTCCEEC--TTTTTTCSBCCSEEECT
T ss_pred             CCCCCCEEEcCCCCCcccCC--HHHhhccccCCcEEECC
Confidence            22678888887662111110  1234566 888888883

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.22  E-value=6.8e-06  Score=83.63  Aligned_cols=180  Identities=15%  Similarity=0.124  Sum_probs=121.9

Q ss_pred             cccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCC--ceeEeCCcCccceEEeeccCCCCeEEE----ECC
Q 013265          152 SSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLT--SLKVSGPSLKLKHLKLNKLDNLKDLQL----HAP  225 (446)
Q Consensus       152 ~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~--~~~i~~~~~~L~~L~i~~~~~l~~~~i----~~p  225 (446)
                      .++++|++|+|+++.+++.. ...+.+ +++|++|++.++....  .......+++|++|.+.++..+..+..    ..+
T Consensus        71 ~~l~~L~~L~Ls~n~l~~~~-~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~  148 (549)
T 2z81_A           71 YSLGSLEHLDLSDNHLSSLS-SSWFGP-LSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT  148 (549)
T ss_dssp             TTCTTCCEEECTTSCCCSCC-HHHHTT-CTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC
T ss_pred             cccccCCEEECCCCccCccC-HHHhcc-CCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhccc
Confidence            47889999999998877532 234678 9999999999886432  122234558899999998864444421    258


Q ss_pred             ceeEEEEccccc----ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCC
Q 013265          226 NLLSFEYSGPIL----PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIP  301 (446)
Q Consensus       226 ~L~~l~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~  301 (446)
                      +|+.|++.++..    +..+.++++|+.+++..+.......   .+...+++++.|++.++.+...    . ..-.....
T Consensus       149 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~---~~~~~l~~L~~L~L~~n~l~~~----~-~~~~~~~~  220 (549)
T 2z81_A          149 SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLE---IFADILSSVRYLELRDTNLARF----Q-FSPLPVDE  220 (549)
T ss_dssp             EEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHH---HHHHSTTTBSEEEEESCBCTTC----C-CCCCSSCC
T ss_pred             ccCeeeccCCcccccChhhhhccccCceEecccCcccccch---hhHhhcccccEEEccCCccccc----c-ccccchhh
Confidence            899999887643    4467788899999997764433222   3456789999999998533210    0 00011223


Q ss_pred             CCCcccEEEEEecC-CCCCHHHHHHHHhhCCCceEEEEEEe
Q 013265          302 EMCNLKHLEIIGTP-KVNDLIFCIALLEAAPSLYKFSLKLV  341 (446)
Q Consensus       302 ~~~~L~~L~L~~~~-~~~~~~~l~~ll~~~p~L~~L~l~~~  341 (446)
                      .+++|++|.+..+. .......+...+..+++|+.|++..+
T Consensus       221 ~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~  261 (549)
T 2z81_A          221 VSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDC  261 (549)
T ss_dssp             CCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESC
T ss_pred             hhhcccceeccccccchhHHHHHHHHhhhhccccccccccc
Confidence            57899999998874 22233456667788999999998654

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.22  E-value=8.5e-07  Score=84.21  Aligned_cols=121  Identities=14%  Similarity=0.161  Sum_probs=53.6

Q ss_pred             ccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCc-e--eEeCCcCccceEEeeccCCCCeEEEE-CCceeEE
Q 013265          155 RHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTS-L--KVSGPSLKLKHLKLNKLDNLKDLQLH-APNLLSF  230 (446)
Q Consensus       155 ~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~-~--~i~~~~~~L~~L~i~~~~~l~~~~i~-~p~L~~l  230 (446)
                      ++|++|.+.+..++.. ....+.+ ++.|+.|++.++..... .  .....+++|+.|.+.++. +..+... .++|++|
T Consensus       121 ~~L~~L~l~~n~l~~~-~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~~~~L~~L  197 (330)
T 1xku_A          121 KTLQELRVHENEITKV-RKSVFNG-LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGLPPSLTEL  197 (330)
T ss_dssp             TTCCEEECCSSCCCBB-CHHHHTT-CTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSCCTTCSEE
T ss_pred             ccccEEECCCCccccc-CHhHhcC-CccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCccccccCCEE
Confidence            4566666655554432 1123455 66666666665543210 0  011123556666665554 2222111 1455555


Q ss_pred             EEccccc----ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEee
Q 013265          231 EYSGPIL----PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDT  281 (446)
Q Consensus       231 ~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~  281 (446)
                      ++.++..    +..+.++++|+.+++..+.......   ..+..+++|+.|++.+
T Consensus       198 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~L~~  249 (330)
T 1xku_A          198 HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN---GSLANTPHLRELHLNN  249 (330)
T ss_dssp             ECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECT---TTGGGSTTCCEEECCS
T ss_pred             ECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeCh---hhccCCCCCCEEECCC
Confidence            5555422    2234455555555554432221111   2334455555555555

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.21  E-value=8.2e-07  Score=83.72  Aligned_cols=194  Identities=21%  Similarity=0.155  Sum_probs=124.6

Q ss_pred             HcCCcEEEEeeeccccccccccccccccccCCccccccccceEEEEEEeChH--HHHHHHhcCCCCcceeeEeccCCCCc
Q 013265          119 ERRVRRLELDFSRVVYNLRFVGQYTFPSHLDFYSSFRHLTDLSLTTVGITGE--VLEHLLCYCCPVLEVLNVAESSSLTS  196 (446)
Q Consensus       119 ~~~l~~L~l~~~~~~~~~~~~~~~~lp~~~~~~~~~~~L~~L~L~~~~~~~~--~l~~ll~~~cp~Le~L~L~~c~~~~~  196 (446)
                      -.++++|.+......        -.+|..++ ...+++|++|+|++..+++.  .+..+....+++|++|++.++.....
T Consensus        94 l~~L~~L~L~~n~l~--------~~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~  164 (312)
T 1wwl_A           94 ISGLQELTLENLEVT--------GTAPPPLL-EATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNF  164 (312)
T ss_dssp             TSCCCEEEEEEEBCB--------SCCCCCSS-SCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCC
T ss_pred             cCCccEEEccCCccc--------chhHHHHH-HhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccc
Confidence            458999998765421        13454433 35789999999999988754  33332211139999999999875433


Q ss_pred             e-eEeCCcCccceEEeeccCCCCe------EE-EECCceeEEEEcccccc-------cccCCCCCcceEEecccchhhhh
Q 013265          197 L-KVSGPSLKLKHLKLNKLDNLKD------LQ-LHAPNLLSFEYSGPILP-------FSFRNVPNLVDASFWGCFSAYIA  261 (446)
Q Consensus       197 ~-~i~~~~~~L~~L~i~~~~~l~~------~~-i~~p~L~~l~~~~~~~~-------~~~~~~~~L~~l~l~~~~~~~~~  261 (446)
                      . ..-..+++|++|.++++.-...      +. -..++|++|++.++...       ..+.++++|+.++++.+......
T Consensus       165 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  244 (312)
T 1wwl_A          165 SCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA  244 (312)
T ss_dssp             CTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSC
T ss_pred             hHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCccc
Confidence            2 1222458999999998872211      11 24589999999988543       12346789999999876433211


Q ss_pred             hhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEE
Q 013265          262 KNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLK  339 (446)
Q Consensus       262 ~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~  339 (446)
                      .  ......+++|+.|.++.+.+.         .++..++  ++|++|+++.+.-... +   . +..+|+|+.|++.
T Consensus       245 ~--~~~~~~l~~L~~L~Ls~N~l~---------~ip~~~~--~~L~~L~Ls~N~l~~~-p---~-~~~l~~L~~L~L~  304 (312)
T 1wwl_A          245 G--APSCDWPSQLNSLNLSFTGLK---------QVPKGLP--AKLSVLDLSYNRLDRN-P---S-PDELPQVGNLSLK  304 (312)
T ss_dssp             C--CSCCCCCTTCCEEECTTSCCS---------SCCSSCC--SEEEEEECCSSCCCSC-C---C-TTTSCEEEEEECT
T ss_pred             c--hhhhhhcCCCCEEECCCCccC---------hhhhhcc--CCceEEECCCCCCCCC-h---h-HhhCCCCCEEecc
Confidence            0  023455789999999985331         2233333  7999999988852111 1   1 5678889988884

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.20  E-value=5.6e-07  Score=83.07  Aligned_cols=169  Identities=16%  Similarity=0.080  Sum_probs=110.5

Q ss_pred             ccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeEeCCcCccceEEeeccCCCCeEEE----ECCcee
Q 013265          153 SFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQL----HAPNLL  228 (446)
Q Consensus       153 ~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~l~~~~i----~~p~L~  228 (446)
                      .+++|+.|.+.+..+++-  . -+.. +|+|+.|++.++.... +.....+++|++|.+.++. +..+..    ..++|+
T Consensus        39 ~l~~L~~L~l~~~~i~~~--~-~l~~-l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~  112 (272)
T 3rfs_A           39 ELNSIDQIIANNSDIKSV--Q-GIQY-LPNVRYLALGGNKLHD-ISALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLK  112 (272)
T ss_dssp             HHTTCCEEECTTSCCCCC--T-TGGG-CTTCCEEECTTSCCCC-CGGGTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCC
T ss_pred             cccceeeeeeCCCCcccc--c-cccc-CCCCcEEECCCCCCCC-chhhcCCCCCCEEECCCCc-cCccChhHhcCCcCCC
Confidence            567788888877666532  1 1567 9999999998876433 2222345789999998876 444331    348899


Q ss_pred             EEEEcccccc----cccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCC
Q 013265          229 SFEYSGPILP----FSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMC  304 (446)
Q Consensus       229 ~l~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~  304 (446)
                      +|++.++...    ..+.++++|+.+++..+.+.....   ..+..+++|+.|++..+.+.        ...+..+..++
T Consensus       113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~--------~~~~~~~~~l~  181 (272)
T 3rfs_A          113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPK---GVFDKLTNLTELDLSYNQLQ--------SLPEGVFDKLT  181 (272)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT---TTTTTCTTCCEEECCSSCCC--------CCCTTTTTTCT
T ss_pred             EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCH---HHhccCccCCEEECCCCCcC--------ccCHHHhcCCc
Confidence            9998877432    235678889999987764432222   44677889999999885331        11123356778


Q ss_pred             cccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEEe
Q 013265          305 NLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLV  341 (446)
Q Consensus       305 ~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~  341 (446)
                      +|++|.+..+.-....   ...+..+++|+.|++...
T Consensus       182 ~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~l~~N  215 (272)
T 3rfs_A          182 QLKDLRLYQNQLKSVP---DGVFDRLTSLQYIWLHDN  215 (272)
T ss_dssp             TCCEEECCSSCCSCCC---TTTTTTCTTCCEEECCSS
T ss_pred             cCCEEECCCCcCCccC---HHHHhCCcCCCEEEccCC
Confidence            9999999887421111   134577899999988654

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.20  E-value=1.4e-06  Score=90.56  Aligned_cols=193  Identities=11%  Similarity=0.055  Sum_probs=121.5

Q ss_pred             cCCcEEEEeeeccccccccccccccccccCCccccccccceEEEEEE-eCh-H---HHHHH--HhcCCCCcceeeEeccC
Q 013265          120 RRVRRLELDFSRVVYNLRFVGQYTFPSHLDFYSSFRHLTDLSLTTVG-ITG-E---VLEHL--LCYCCPVLEVLNVAESS  192 (446)
Q Consensus       120 ~~l~~L~l~~~~~~~~~~~~~~~~lp~~~~~~~~~~~L~~L~L~~~~-~~~-~---~l~~l--l~~~cp~Le~L~L~~c~  192 (446)
                      .++++|.+.....        .-.+|..   ..++++|++|+|.++. +++ .   .+..+  +.. +++|++|++.+|.
T Consensus       249 ~~L~~L~L~~n~l--------~~~~p~~---l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~-l~~L~~L~L~~n~  316 (636)
T 4eco_A          249 KDLTDVEVYNCPN--------LTKLPTF---LKALPEMQLINVACNRGISGEQLKDDWQALADAPV-GEKIQIIYIGYNN  316 (636)
T ss_dssp             TTCCEEEEECCTT--------CSSCCTT---TTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGG-GGTCCEEECCSSC
T ss_pred             CCCCEEEecCCcC--------CccChHH---HhcCCCCCEEECcCCCCCccccchHHHHhhhcccc-CCCCCEEECCCCc
Confidence            4788888865421        1234533   3578999999999997 776 2   23332  234 6999999999987


Q ss_pred             CCCcee--EeCCcCccceEEeeccCCCC-eEE--EECCceeEEEEcccc---cccccCCCCC-cceEEecccchhhhhhh
Q 013265          193 SLTSLK--VSGPSLKLKHLKLNKLDNLK-DLQ--LHAPNLLSFEYSGPI---LPFSFRNVPN-LVDASFWGCFSAYIAKN  263 (446)
Q Consensus       193 ~~~~~~--i~~~~~~L~~L~i~~~~~l~-~~~--i~~p~L~~l~~~~~~---~~~~~~~~~~-L~~l~l~~~~~~~~~~~  263 (446)
                      ......  .-..+++|+.|.+.++. +. .+.  -..++|+.|++.++.   .+..+.++++ |+.+++..+... ..+ 
T Consensus       317 l~~ip~~~~l~~l~~L~~L~L~~N~-l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp-  393 (636)
T 4eco_A          317 LKTFPVETSLQKMKKLGMLECLYNQ-LEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIP-  393 (636)
T ss_dssp             CSSCCCHHHHTTCTTCCEEECCSCC-CEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCC-
T ss_pred             CCccCchhhhccCCCCCEEeCcCCc-CccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccc-
Confidence            653222  23355789999999886 33 322  234789999888773   3445667788 999999776433 111 


Q ss_pred             hhhhhcc--CCCceEEEEeecccccccchhcccccccCCC-------CCCcccEEEEEecCCCCCHHHHHHHHhhCCCce
Q 013265          264 LCQHSIF--LVQLHTLKLDTCHLLIGDSEYRAGRYLHDIP-------EMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLY  334 (446)
Q Consensus       264 l~~~l~~--l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~-------~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~  334 (446)
                        ..+..  +++|+.|++..+.+.        ...+..++       ..++|++|.+..+.-. .+  -..++..+++|+
T Consensus       394 --~~~~~~~l~~L~~L~Ls~N~l~--------~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~l--p~~~~~~l~~L~  460 (636)
T 4eco_A          394 --NIFDAKSVSVMSAIDFSYNEIG--------SVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KF--PKELFSTGSPLS  460 (636)
T ss_dssp             --SCCCTTCSSCEEEEECCSSCTT--------TTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SC--CTHHHHTTCCCS
T ss_pred             --hhhhhcccCccCEEECcCCcCC--------CcchhhhcccccccccCCCCCEEECcCCccC-cC--CHHHHccCCCCC
Confidence              33333  347899998874331        11122333       5568888888887522 11  123456788899


Q ss_pred             EEEEEE
Q 013265          335 KFSLKL  340 (446)
Q Consensus       335 ~L~l~~  340 (446)
                      .|++..
T Consensus       461 ~L~Ls~  466 (636)
T 4eco_A          461 SINLMG  466 (636)
T ss_dssp             EEECCS
T ss_pred             EEECCC
Confidence            888854

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=98.20  E-value=1.2e-06  Score=82.76  Aligned_cols=191  Identities=14%  Similarity=0.059  Sum_probs=125.7

Q ss_pred             cCCcEEEEee-eccccccccccccccccccCCccccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCce-
Q 013265          120 RRVRRLELDF-SRVVYNLRFVGQYTFPSHLDFYSSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSL-  197 (446)
Q Consensus       120 ~~l~~L~l~~-~~~~~~~~~~~~~~lp~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~-  197 (446)
                      +.++.|.+.. ...        .-.+|..   ...+++|++|+|.+..+++. +...+.. +++|++|++.++...+.+ 
T Consensus        76 ~~L~~L~L~~~n~l--------~~~~p~~---l~~l~~L~~L~Ls~n~l~~~-~p~~~~~-l~~L~~L~Ls~N~l~~~~p  142 (313)
T 1ogq_A           76 PYLNFLYIGGINNL--------VGPIPPA---IAKLTQLHYLYITHTNVSGA-IPDFLSQ-IKTLVTLDFSYNALSGTLP  142 (313)
T ss_dssp             TTCSEEEEEEETTE--------ESCCCGG---GGGCTTCSEEEEEEECCEEE-CCGGGGG-CTTCCEEECCSSEEESCCC
T ss_pred             CCCCeeeCCCCCcc--------cccCChh---HhcCCCCCEEECcCCeeCCc-CCHHHhC-CCCCCEEeCCCCccCCcCC
Confidence            4788888862 221        1134433   35789999999999887632 2223677 999999999988644222 


Q ss_pred             eEeCCcCccceEEeeccCCCCeEEE----ECC-ceeEEEEccccc----ccccCCCCCcceEEecccchhhhhhhhhhhh
Q 013265          198 KVSGPSLKLKHLKLNKLDNLKDLQL----HAP-NLLSFEYSGPIL----PFSFRNVPNLVDASFWGCFSAYIAKNLCQHS  268 (446)
Q Consensus       198 ~i~~~~~~L~~L~i~~~~~l~~~~i----~~p-~L~~l~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l  268 (446)
                      .....+++|++|.+.++. +.....    ..+ +|+.|++.+...    +..+..++ |+.+++..+.......   ..+
T Consensus       143 ~~~~~l~~L~~L~L~~N~-l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~---~~~  217 (313)
T 1ogq_A          143 PSISSLPNLVGITFDGNR-ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDAS---VLF  217 (313)
T ss_dssp             GGGGGCTTCCEEECCSSC-CEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCG---GGC
T ss_pred             hHHhcCCCCCeEECcCCc-ccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCC---HHH
Confidence            112244789999999886 432211    223 899999887632    34455665 9999998764432222   567


Q ss_pred             ccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEE
Q 013265          269 IFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKL  340 (446)
Q Consensus       269 ~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~  340 (446)
                      ..+++|+.|.+..+.+.         .....+..+++|++|++..+.-...   +...+..+++|+.|++..
T Consensus       218 ~~l~~L~~L~L~~N~l~---------~~~~~~~~l~~L~~L~Ls~N~l~~~---~p~~l~~l~~L~~L~Ls~  277 (313)
T 1ogq_A          218 GSDKNTQKIHLAKNSLA---------FDLGKVGLSKNLNGLDLRNNRIYGT---LPQGLTQLKFLHSLNVSF  277 (313)
T ss_dssp             CTTSCCSEEECCSSEEC---------CBGGGCCCCTTCCEEECCSSCCEEC---CCGGGGGCTTCCEEECCS
T ss_pred             hcCCCCCEEECCCCcee---------eecCcccccCCCCEEECcCCcccCc---CChHHhcCcCCCEEECcC
Confidence            78999999999985432         1112255679999999998852211   123467899999999954

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.19  E-value=5e-07  Score=83.29  Aligned_cols=194  Identities=14%  Similarity=0.096  Sum_probs=93.5

Q ss_pred             ccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCce-eEeCCcCccceEEeeccCCCCeEEEECCceeEEEEc
Q 013265          155 RHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSL-KVSGPSLKLKHLKLNKLDNLKDLQLHAPNLLSFEYS  233 (446)
Q Consensus       155 ~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~-~i~~~~~~L~~L~i~~~~~l~~~~i~~p~L~~l~~~  233 (446)
                      ++|++|+|++..++.-. ...+.. +++|++|++.++...... .+...+++|++|.+.++. +..+.            
T Consensus        37 ~~l~~L~l~~n~l~~~~-~~~~~~-l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~-l~~~~------------  101 (270)
T 2o6q_A           37 ADTKKLDLQSNKLSSLP-SKAFHR-LTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK-LQALP------------  101 (270)
T ss_dssp             TTCSEEECCSSCCSCCC-TTSSSS-CTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSC-CCCCC------------
T ss_pred             CCCCEEECcCCCCCeeC-HHHhcC-CCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCc-CCcCC------------
Confidence            56777777776655321 112456 777777777766432111 011123455666555543 22111            


Q ss_pred             ccccccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEEe
Q 013265          234 GPILPFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIG  313 (446)
Q Consensus       234 ~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~  313 (446)
                          +..+.++++|+.+++..+.+.....   ..+..+++|+.|++.++.+.        ......+..+++|++|.+..
T Consensus       102 ----~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~Ls~n~l~--------~~~~~~~~~l~~L~~L~L~~  166 (270)
T 2o6q_A          102 ----IGVFDQLVNLAELRLDRNQLKSLPP---RVFDSLTKLTYLSLGYNELQ--------SLPKGVFDKLTSLKELRLYN  166 (270)
T ss_dssp             ----TTTTTTCSSCCEEECCSSCCCCCCT---TTTTTCTTCCEEECCSSCCC--------CCCTTTTTTCTTCCEEECCS
T ss_pred             ----HhHcccccCCCEEECCCCccCeeCH---HHhCcCcCCCEEECCCCcCC--------ccCHhHccCCcccceeEecC
Confidence                1123455666666665443222111   33456677777777763221        01112245567777777766


Q ss_pred             cCCCCCHHHHHHHHhhCCCceEEEEEEecccccccccccccccCCCCccccccCCCcEEEEEe--eecCcc-hHHHHHHH
Q 013265          314 TPKVNDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTIKDQPYLSFTELRSIRVVELLG--FVGHTA-DFELVMYL  390 (446)
Q Consensus       314 ~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~p~c~~~~~~~l~~L~~v~i~~--~~g~~~-e~~~~~~l  390 (446)
                      +.-..-.   ...+..+++|+.|++...   .      +..+|..   .+..+.+|+.+.+.+  +..+.. -..+.+.+
T Consensus       167 n~l~~~~---~~~~~~l~~L~~L~L~~N---~------l~~~~~~---~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~l  231 (270)
T 2o6q_A          167 NQLKRVP---EGAFDKLTELKTLKLDNN---Q------LKRVPEG---AFDSLEKLKMLQLQENPWDCTCNGIIYMAKWL  231 (270)
T ss_dssp             SCCSCCC---TTTTTTCTTCCEEECCSS---C------CSCCCTT---TTTTCTTCCEEECCSSCBCCSSSSSHHHHHHH
T ss_pred             CcCcEeC---hhHhccCCCcCEEECCCC---c------CCcCCHH---HhccccCCCEEEecCCCeeCCCccHHHHHHHH
Confidence            6311100   012456777887777432   1      1112211   011236777777776  333333 23445555


Q ss_pred             Hhc
Q 013265          391 IFS  393 (446)
Q Consensus       391 l~~  393 (446)
                      .++
T Consensus       232 ~~~  234 (270)
T 2o6q_A          232 KKK  234 (270)
T ss_dssp             HHH
T ss_pred             Hhh
Confidence            443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.18  E-value=1.4e-06  Score=86.63  Aligned_cols=38  Identities=18%  Similarity=0.097  Sum_probs=16.6

Q ss_pred             ccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccC
Q 013265          153 SFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESS  192 (446)
Q Consensus       153 ~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~  192 (446)
                      ++++|++|+|.+..++.- ....+.. +++|++|++.++.
T Consensus       121 ~l~~L~~L~L~~n~l~~~-~~~~~~~-l~~L~~L~L~~N~  158 (452)
T 3zyi_A          121 GLASLNTLELFDNWLTVI-PSGAFEY-LSKLRELWLRNNP  158 (452)
T ss_dssp             TCTTCCEEECCSSCCSBC-CTTTSSS-CTTCCEEECCSCC
T ss_pred             CcccCCEEECCCCcCCcc-Chhhhcc-cCCCCEEECCCCC
Confidence            345555555555443321 0112334 5555555555443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.18  E-value=9.2e-07  Score=91.23  Aligned_cols=102  Identities=21%  Similarity=0.194  Sum_probs=68.2

Q ss_pred             cccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCce-eEeCCcCccceEEeeccCCCCeEEE----ECCc
Q 013265          152 SSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSL-KVSGPSLKLKHLKLNKLDNLKDLQL----HAPN  226 (446)
Q Consensus       152 ~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~-~i~~~~~~L~~L~i~~~~~l~~~~i----~~p~  226 (446)
                      .++++|++|+|.++.+++-. ...+.. +++|+.|+|.++...... .....+++|+.|.++++. +..+..    ..++
T Consensus        72 ~~l~~L~~L~L~~n~l~~~~-~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~  148 (597)
T 3oja_B           72 DSFRQVELLNLNDLQIEEID-TYAFAY-AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPK  148 (597)
T ss_dssp             HHCCCCSEEECTTSCCCEEC-TTTTTT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTT
T ss_pred             ccCCCCcEEECCCCCCCCCC-hHHhcC-CCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCC-CCCCCHHHhccCCC
Confidence            45788888888887665421 113567 888999999887643322 122345788889888876 544431    3578


Q ss_pred             eeEEEEccccc----ccccCCCCCcceEEecccc
Q 013265          227 LLSFEYSGPIL----PFSFRNVPNLVDASFWGCF  256 (446)
Q Consensus       227 L~~l~~~~~~~----~~~~~~~~~L~~l~l~~~~  256 (446)
                      |++|++.++..    +..+.++++|+.+++..+.
T Consensus       149 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~  182 (597)
T 3oja_B          149 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR  182 (597)
T ss_dssp             CCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC
T ss_pred             CCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC
Confidence            88998887743    2346778889999887653

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.15  E-value=2.7e-06  Score=87.78  Aligned_cols=209  Identities=13%  Similarity=0.021  Sum_probs=102.5

Q ss_pred             ccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeEeCCcCccceEEeeccCCCCeEEEECCceeEEEE
Q 013265          153 SFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQLHAPNLLSFEY  232 (446)
Q Consensus       153 ~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~l~~~~i~~p~L~~l~~  232 (446)
                      .+++|++|+|+++.++.  +.   .. +++|+.|++.++.......   ..++|+.|.+.++. +..+....++|++|++
T Consensus        79 ~l~~L~~L~Ls~N~l~~--lp---~~-l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~-l~~lp~~l~~L~~L~L  148 (622)
T 3g06_A           79 LPPELRTLEVSGNQLTS--LP---VL-PPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGNQ-LTSLPVLPPGLQELSV  148 (622)
T ss_dssp             CCTTCCEEEECSCCCSC--CC---CC-CTTCCEEEECSCCCCCCCC---CCTTCCEEECCSSC-CSCCCCCCTTCCEEEC
T ss_pred             cCCCCCEEEcCCCcCCc--CC---CC-CCCCCEEECcCCcCCCCCC---CCCCcCEEECCCCC-CCcCCCCCCCCCEEEC
Confidence            35677777777776653  11   15 7777777777664322111   23567777776664 4444334466777766


Q ss_pred             cccccccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchh--------cccccccCCCCCC
Q 013265          233 SGPILPFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEY--------RAGRYLHDIPEMC  304 (446)
Q Consensus       233 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~--------~~~~~~~~~~~~~  304 (446)
                      .++.........++|+.+++..+.+.       .+...+++|+.|+++++.+..-....        ....+......++
T Consensus       149 s~N~l~~l~~~~~~L~~L~L~~N~l~-------~l~~~~~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~  221 (622)
T 3g06_A          149 SDNQLASLPALPSELCKLWAYNNQLT-------SLPMLPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPS  221 (622)
T ss_dssp             CSSCCSCCCCCCTTCCEEECCSSCCS-------CCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCCT
T ss_pred             cCCcCCCcCCccCCCCEEECCCCCCC-------CCcccCCCCcEEECCCCCCCCCCCccchhhEEECcCCcccccCCCCC
Confidence            66543221123345555555443211       11133455555555553221000000        0000000111235


Q ss_pred             cccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEEecccccccccccccccCCCCccccccCCCcEEEEEeeecCcchH
Q 013265          305 NLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTIKDQPYLSFTELRSIRVVELLGFVGHTADF  384 (446)
Q Consensus       305 ~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~p~c~~~~~~~l~~L~~v~i~~~~g~~~e~  384 (446)
                      +|+.|.++.+.-. .++      ..+++|+.|+++.+         .+..+|..       +.+|+++.+.+..-.  .+
T Consensus       222 ~L~~L~Ls~N~L~-~lp------~~l~~L~~L~Ls~N---------~L~~lp~~-------~~~L~~L~Ls~N~L~--~l  276 (622)
T 3g06_A          222 GLKELIVSGNRLT-SLP------VLPSELKELMVSGN---------RLTSLPML-------PSGLLSLSVYRNQLT--RL  276 (622)
T ss_dssp             TCCEEECCSSCCS-CCC------CCCTTCCEEECCSS---------CCSCCCCC-------CTTCCEEECCSSCCC--SC
T ss_pred             CCCEEEccCCccC-cCC------CCCCcCcEEECCCC---------CCCcCCcc-------cccCcEEeCCCCCCC--cC
Confidence            6666666655311 111      34566777666321         22233442       277999888774322  11


Q ss_pred             HHHHHHHhcCccccceEEecCC
Q 013265          385 ELVMYLIFSAKLLEKIIIDPCP  406 (446)
Q Consensus       385 ~~~~~ll~~a~~Le~l~i~~~~  406 (446)
                      .  . -+.+.+.|+.+.+..+.
T Consensus       277 p--~-~l~~l~~L~~L~L~~N~  295 (622)
T 3g06_A          277 P--E-SLIHLSSETTVNLEGNP  295 (622)
T ss_dssp             C--G-GGGGSCTTCEEECCSCC
T ss_pred             C--H-HHhhccccCEEEecCCC
Confidence            0  1 13678999999988764

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.15  E-value=8.1e-07  Score=85.40  Aligned_cols=78  Identities=23%  Similarity=0.265  Sum_probs=50.6

Q ss_pred             ccccccccceEEEEEEeC--------hHHHHHHHhcCCCCcceeeEeccCCCCceeEeCCcCccceEEeeccCCCCe---
Q 013265          151 YSSFRHLTDLSLTTVGIT--------GEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKD---  219 (446)
Q Consensus       151 ~~~~~~L~~L~L~~~~~~--------~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~l~~---  219 (446)
                      ...+++|+.|.+..+...        ..++..++.. +|+|++|.|.++.+.....+.  +++|++|.+..|. +..   
T Consensus       135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~-~P~L~~L~L~g~~~l~l~~~~--~~~L~~L~L~~~~-l~~~~l  210 (362)
T 2ra8_A          135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDA-MPLLNNLKIKGTNNLSIGKKP--RPNLKSLEIISGG-LPDSVV  210 (362)
T ss_dssp             HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHT-CTTCCEEEEECCBTCBCCSCB--CTTCSEEEEECSB-CCHHHH
T ss_pred             hhhcchhhheeecCcchhhcccccccccCHHHHHhc-CCCCcEEEEeCCCCceecccc--CCCCcEEEEecCC-CChHHH
Confidence            346899999998765432        1247788899 999999999988543322222  3678888887664 221   


Q ss_pred             --EE-EECCceeEEEE
Q 013265          220 --LQ-LHAPNLLSFEY  232 (446)
Q Consensus       220 --~~-i~~p~L~~l~~  232 (446)
                        +. ...|+|++|++
T Consensus       211 ~~l~~~~lp~L~~L~L  226 (362)
T 2ra8_A          211 EDILGSDLPNLEKLVL  226 (362)
T ss_dssp             HHHHHSBCTTCCEEEE
T ss_pred             HHHHHccCCCCcEEEE
Confidence              11 13466666665

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.15  E-value=4.9e-06  Score=85.82  Aligned_cols=179  Identities=16%  Similarity=0.045  Sum_probs=96.3

Q ss_pred             ccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeEeCCcCccceEEeeccCCCCeEEEEC--------
Q 013265          153 SFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQLHA--------  224 (446)
Q Consensus       153 ~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~l~~~~i~~--------  224 (446)
                      .+++|++|+|+++.++.-     -.. .++|+.|.+.++....   +....++|++|.++++. +..+.-..        
T Consensus        99 ~l~~L~~L~Ls~N~l~~l-----~~~-l~~L~~L~L~~N~l~~---lp~~l~~L~~L~Ls~N~-l~~l~~~~~~L~~L~L  168 (622)
T 3g06_A           99 LPPGLLELSIFSNPLTHL-----PAL-PSGLCKLWIFGNQLTS---LPVLPPGLQELSVSDNQ-LASLPALPSELCKLWA  168 (622)
T ss_dssp             CCTTCCEEEECSCCCCCC-----CCC-CTTCCEEECCSSCCSC---CCCCCTTCCEEECCSSC-CSCCCCCCTTCCEEEC
T ss_pred             CCCCCCEEECcCCcCCCC-----CCC-CCCcCEEECCCCCCCc---CCCCCCCCCEEECcCCc-CCCcCCccCCCCEEEC
Confidence            567777777777665531     114 6667777766654222   11122556666666553 33322222        


Q ss_pred             ------------CceeEEEEcccccccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhc
Q 013265          225 ------------PNLLSFEYSGPILPFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYR  292 (446)
Q Consensus       225 ------------p~L~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~  292 (446)
                                  ++|+.|+++++.........++|+.+++..+.+.       .+...+++|+.|.++++.+.       
T Consensus       169 ~~N~l~~l~~~~~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~-------~l~~~~~~L~~L~Ls~N~L~-------  234 (622)
T 3g06_A          169 YNNQLTSLPMLPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLT-------SLPALPSGLKELIVSGNRLT-------  234 (622)
T ss_dssp             CSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS-------SCCCCCTTCCEEECCSSCCS-------
T ss_pred             CCCCCCCCcccCCCCcEEECCCCCCCCCCCccchhhEEECcCCccc-------ccCCCCCCCCEEEccCCccC-------
Confidence                        4555555554432211123345555555443221       22234467888887774221       


Q ss_pred             ccccccCCCCCCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEEecccccccccccccccCCCCccccccCCCcEE
Q 013265          293 AGRYLHDIPEMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTIKDQPYLSFTELRSIRVV  372 (446)
Q Consensus       293 ~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~p~c~~~~~~~l~~L~~v  372 (446)
                        .++   ..+++|+.|+|+.+.- ..++.      .+++|+.|++..+         .+..+|..+    ..+.+|+.+
T Consensus       235 --~lp---~~l~~L~~L~Ls~N~L-~~lp~------~~~~L~~L~Ls~N---------~L~~lp~~l----~~l~~L~~L  289 (622)
T 3g06_A          235 --SLP---VLPSELKELMVSGNRL-TSLPM------LPSGLLSLSVYRN---------QLTRLPESL----IHLSSETTV  289 (622)
T ss_dssp             --CCC---CCCTTCCEEECCSSCC-SCCCC------CCTTCCEEECCSS---------CCCSCCGGG----GGSCTTCEE
T ss_pred             --cCC---CCCCcCcEEECCCCCC-CcCCc------ccccCcEEeCCCC---------CCCcCCHHH----hhccccCEE
Confidence              112   4568999999998841 12211      5789999998432         222334332    245889999


Q ss_pred             EEEeeecC
Q 013265          373 ELLGFVGH  380 (446)
Q Consensus       373 ~i~~~~g~  380 (446)
                      .+.+-.-.
T Consensus       290 ~L~~N~l~  297 (622)
T 3g06_A          290 NLEGNPLS  297 (622)
T ss_dssp             ECCSCCCC
T ss_pred             EecCCCCC
Confidence            99875433

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.13  E-value=2.8e-07  Score=87.67  Aligned_cols=79  Identities=18%  Similarity=0.235  Sum_probs=44.4

Q ss_pred             cccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeEeCCcCccceEEeeccCCCCeEE----EECCce
Q 013265          152 SSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQ----LHAPNL  227 (446)
Q Consensus       152 ~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~l~~~~----i~~p~L  227 (446)
                      .++++|++|+|.++.++.-. ...+.. +++|++|++.++.... +..... ++|++|.+.++. +..+.    -..++|
T Consensus        75 ~~l~~L~~L~L~~n~l~~~~-~~~~~~-l~~L~~L~L~~n~l~~-l~~~~~-~~L~~L~l~~n~-i~~~~~~~~~~l~~L  149 (332)
T 2ft3_A           75 KGLQHLYALVLVNNKISKIH-EKAFSP-LRKLQKLYISKNHLVE-IPPNLP-SSLVELRIHDNR-IRKVPKGVFSGLRNM  149 (332)
T ss_dssp             TTCTTCCEEECCSSCCCEEC-GGGSTT-CTTCCEEECCSSCCCS-CCSSCC-TTCCEEECCSSC-CCCCCSGGGSSCSSC
T ss_pred             hCCCCCcEEECCCCccCccC-HhHhhC-cCCCCEEECCCCcCCc-cCcccc-ccCCEEECCCCc-cCccCHhHhCCCccC
Confidence            45677777777776655321 122556 7777777777664331 111111 567777777665 33332    124677


Q ss_pred             eEEEEccc
Q 013265          228 LSFEYSGP  235 (446)
Q Consensus       228 ~~l~~~~~  235 (446)
                      ++|++.+.
T Consensus       150 ~~L~l~~n  157 (332)
T 2ft3_A          150 NCIEMGGN  157 (332)
T ss_dssp             CEEECCSC
T ss_pred             CEEECCCC
Confidence            77776665

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.13  E-value=2e-05  Score=80.46  Aligned_cols=257  Identities=13%  Similarity=0.087  Sum_probs=147.0

Q ss_pred             CcceEEEEEecCCcchHHHHHHHHHHcCCcEEEEeeeccccccccccccccccccCCccccccccceEEEEEEeC-----
Q 013265           94 CTEELRICFDVFSNHDIDNWIKFALERRVRRLELDFSRVVYNLRFVGQYTFPSHLDFYSSFRHLTDLSLTTVGIT-----  168 (446)
Q Consensus        94 ~l~~l~l~~~~~~~~~~~~wi~~~~~~~l~~L~l~~~~~~~~~~~~~~~~lp~~~~~~~~~~~L~~L~L~~~~~~-----  168 (446)
                      .++.+.+.........+..+........+++|.+......        -.+|..+|.. ..++|+.|.+.++...     
T Consensus       250 ~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~--------~~ip~~~~~~-~~~~L~~L~~~~~~~~~~~~p  320 (562)
T 3a79_B          250 TLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTIT--------ERIDREEFTY-SETALKSLMIEHVKNQVFLFS  320 (562)
T ss_dssp             SCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEEC--------SCCCCCCCCC-CSCSCCEEEEEEEEECCCSSC
T ss_pred             cceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEee--------ccccchhhhc-ccccchheehhhcccceeecC
Confidence            3555655432222223334444333347777777554311        1355544332 1355666666555433     


Q ss_pred             hHHHHHHHhcCCCCcceeeEeccCCCCceeEeCCcCccceEEeeccCCCCeE----EEECCceeEEEEcccccc------
Q 013265          169 GEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDL----QLHAPNLLSFEYSGPILP------  238 (446)
Q Consensus       169 ~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~l~~~----~i~~p~L~~l~~~~~~~~------  238 (446)
                      ++.+..++ . .+.|++|.+.++.... ......+++|++|.+.++. +...    .-..++|+.|++.+....      
T Consensus       321 ~~~~~~~~-~-~~~L~~L~l~~n~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  396 (562)
T 3a79_B          321 KEALYSVF-A-EMNIKMLSISDTPFIH-MVCPPSPSSFTFLNFTQNV-FTDSVFQGCSTLKRLQTLILQRNGLKNFFKVA  396 (562)
T ss_dssp             HHHHHHHH-H-TCCCSEEEEESSCCCC-CCCCSSCCCCCEEECCSSC-CCTTTTTTCCSCSSCCEEECCSSCCCBTTHHH
T ss_pred             hhhhhhhh-c-cCcceEEEccCCCccc-ccCccCCCCceEEECCCCc-cccchhhhhcccCCCCEEECCCCCcCCcccch
Confidence            23444433 3 4689999999886432 2222445789999998876 3321    124588999988876432      


Q ss_pred             cccCCCCCcceEEecccchhh-hhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEEecCCC
Q 013265          239 FSFRNVPNLVDASFWGCFSAY-IAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTPKV  317 (446)
Q Consensus       239 ~~~~~~~~L~~l~l~~~~~~~-~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~  317 (446)
                      ..+.++++|+.+++..+.... ...   ..+..+++++.|.++++.+.        ...+..++  ++|+.|++..+.-.
T Consensus       397 ~~~~~l~~L~~L~l~~N~l~~~~~~---~~~~~l~~L~~L~l~~n~l~--------~~~~~~l~--~~L~~L~L~~N~l~  463 (562)
T 3a79_B          397 LMTKNMSSLETLDVSLNSLNSHAYD---RTCAWAESILVLNLSSNMLT--------GSVFRCLP--PKVKVLDLHNNRIM  463 (562)
T ss_dssp             HTTTTCTTCCEEECTTSCCBSCCSS---CCCCCCTTCCEEECCSSCCC--------GGGGSSCC--TTCSEEECCSSCCC
T ss_pred             hhhcCCCCCCEEECCCCcCCCccCh---hhhcCcccCCEEECCCCCCC--------cchhhhhc--CcCCEEECCCCcCc
Confidence            346788999999997764332 111   34567789999999885331        11122222  68999999887411


Q ss_pred             CCHHHHHHHHhhCCCceEEEEEEecccccccccccccccCCCCccccccCCCcEEEEEe--eecCcchHHHHHHHHh
Q 013265          318 NDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTIKDQPYLSFTELRSIRVVELLG--FVGHTADFELVMYLIF  392 (446)
Q Consensus       318 ~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~p~c~~~~~~~l~~L~~v~i~~--~~g~~~e~~~~~~ll~  392 (446)
                       .   +..-+..+++|+.|++...         .+..+|..   .+..+.+|+.+.+.+  +.++.....++...+.
T Consensus       464 -~---ip~~~~~l~~L~~L~L~~N---------~l~~l~~~---~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~~~  524 (562)
T 3a79_B          464 -S---IPKDVTHLQALQELNVASN---------QLKSVPDG---VFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWIN  524 (562)
T ss_dssp             -C---CCTTTTSSCCCSEEECCSS---------CCCCCCTT---STTTCTTCCCEECCSCCBCCCHHHHHHHHHHHH
T ss_pred             -c---cChhhcCCCCCCEEECCCC---------CCCCCCHH---HHhcCCCCCEEEecCCCcCCCcchHHHHHHHHH
Confidence             1   1111337899999998432         22233432   011347899999987  5566665666664443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.11  E-value=1.9e-06  Score=90.14  Aligned_cols=221  Identities=16%  Similarity=0.091  Sum_probs=115.9

Q ss_pred             ccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCce--eEeCCcCccceEEeeccCCCCeEE----EECCcee
Q 013265          155 RHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSL--KVSGPSLKLKHLKLNKLDNLKDLQ----LHAPNLL  228 (446)
Q Consensus       155 ~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~--~i~~~~~~L~~L~i~~~~~l~~~~----i~~p~L~  228 (446)
                      +.|+.|+|.++.+++.. ...+.. +++|+.|++.++...+.+  .....+++|+.|.++++. +..+.    ...|+|+
T Consensus       381 ~~L~~L~L~~n~l~~~~-~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~L~  457 (680)
T 1ziw_A          381 SPLHILNLTKNKISKIE-SDAFSW-LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK-YLQLTRNSFALVPSLQ  457 (680)
T ss_dssp             SCCCEEECTTSCCCEEC-TTTTTT-CTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS-EEECCTTTTTTCTTCC
T ss_pred             CcCceEECCCCCCCeEC-hhhhhC-CCCCCEEeCCCCcCccccCcccccCcccccEEecCCCC-cceeChhhhhcCcccc
Confidence            35555555554443211 122455 777777777766543221  111234667777777665 22111    1247777


Q ss_pred             EEEEcccc------cccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhccccc----cc
Q 013265          229 SFEYSGPI------LPFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRY----LH  298 (446)
Q Consensus       229 ~l~~~~~~------~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~----~~  298 (446)
                      .|.+.++.      .+..+.++++|+.+++..+.......   ..+..+++|+.|+++++.+..    ......    ..
T Consensus       458 ~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~---~~~~~l~~L~~L~Ls~N~l~~----~~~~~~~~~~~~  530 (680)
T 1ziw_A          458 RLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIND---DMLEGLEKLEILDLQHNNLAR----LWKHANPGGPIY  530 (680)
T ss_dssp             EEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCT---TTTTTCTTCCEEECCSSCCGG----GGSTTSTTSCCC
T ss_pred             cchhccccccccccCCcccccCCCCCEEECCCCCCCcCCh---hhhccccccCEEeCCCCCccc----cchhhccCCcch
Confidence            77776652      23446677788888886654332222   445677888888887753321    000011    11


Q ss_pred             CCCCCCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEEecccccccccccccccCCCCccccccCCCcEEEEEeee
Q 013265          299 DIPEMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTIKDQPYLSFTELRSIRVVELLGFV  378 (446)
Q Consensus       299 ~~~~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~p~c~~~~~~~l~~L~~v~i~~~~  378 (446)
                      .+..+++|+.|+|..+.-. .+.  ...+..+++|+.|++...         .+..+|..   .|..+.+|+.+.+.+-.
T Consensus       531 ~~~~l~~L~~L~L~~N~l~-~i~--~~~~~~l~~L~~L~Ls~N---------~l~~l~~~---~~~~l~~L~~L~L~~N~  595 (680)
T 1ziw_A          531 FLKGLSHLHILNLESNGFD-EIP--VEVFKDLFELKIIDLGLN---------NLNTLPAS---VFNNQVSLKSLNLQKNL  595 (680)
T ss_dssp             TTTTCTTCCEEECCSSCCC-CCC--TTTTTTCTTCCEEECCSS---------CCCCCCTT---TTTTCTTCCEEECTTSC
T ss_pred             hhcCCCCCCEEECCCCCCC-CCC--HHHcccccCcceeECCCC---------CCCcCCHh---HhCCCCCCCEEECCCCc
Confidence            2456778888888776411 110  113567888888888322         12222321   11234778888887642


Q ss_pred             --cCcchHHHHHHHHhcCccccceEEecC
Q 013265          379 --GHTADFELVMYLIFSAKLLEKIIIDPC  405 (446)
Q Consensus       379 --g~~~e~~~~~~ll~~a~~Le~l~i~~~  405 (446)
                        +.... .+.    ...+.|+.+.+...
T Consensus       596 l~~~~~~-~~~----~~~~~L~~l~l~~N  619 (680)
T 1ziw_A          596 ITSVEKK-VFG----PAFRNLTELDMRFN  619 (680)
T ss_dssp             CCBCCHH-HHH----HHHTTCSEEECTTC
T ss_pred             CCccChh-Hhc----ccccccCEEEccCC
Confidence              32221 111    13467787777654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.10  E-value=3e-06  Score=90.64  Aligned_cols=196  Identities=10%  Similarity=0.049  Sum_probs=119.3

Q ss_pred             cCCcEEEEeeeccccccccccccccccccCCccccccccceEEEEEE-eCh----HHHHHHH---hcCCCCcceeeEecc
Q 013265          120 RRVRRLELDFSRVVYNLRFVGQYTFPSHLDFYSSFRHLTDLSLTTVG-ITG----EVLEHLL---CYCCPVLEVLNVAES  191 (446)
Q Consensus       120 ~~l~~L~l~~~~~~~~~~~~~~~~lp~~~~~~~~~~~L~~L~L~~~~-~~~----~~l~~ll---~~~cp~Le~L~L~~c  191 (446)
                      .+++.|.+.....        .-.+|..   ..++++|+.|+|.++. +++    ..+..+-   .. +|+|+.|++.++
T Consensus       491 ~~L~~L~Ls~N~l--------~~~iP~~---l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~-l~~L~~L~Ls~N  558 (876)
T 4ecn_A          491 KDLTDVELYNCPN--------MTQLPDF---LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDT-GPKIQIFYMGYN  558 (876)
T ss_dssp             TTCCEEEEESCTT--------CCSCCGG---GGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTT-TTTCCEEECCSS
T ss_pred             CCCCEEECcCCCC--------CccChHH---HhCCCCCCEEECcCCCCcccccchHHHHhhhhcccc-cCCccEEEeeCC
Confidence            4788888855421        1234533   3578999999999987 776    2333322   45 779999999988


Q ss_pred             CCCCcee--EeCCcCccceEEeeccCCCCeEE-E-ECCceeEEEEccccc---ccccCCCCC-cceEEecccchhhhhhh
Q 013265          192 SSLTSLK--VSGPSLKLKHLKLNKLDNLKDLQ-L-HAPNLLSFEYSGPIL---PFSFRNVPN-LVDASFWGCFSAYIAKN  263 (446)
Q Consensus       192 ~~~~~~~--i~~~~~~L~~L~i~~~~~l~~~~-i-~~p~L~~l~~~~~~~---~~~~~~~~~-L~~l~l~~~~~~~~~~~  263 (446)
                      .......  .-..+++|+.|.++++. +..+. + ..++|+.|++.++..   +-.+.++++ |+.+++..+.+. .   
T Consensus       559 ~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~---  633 (876)
T 4ecn_A          559 NLEEFPASASLQKMVKLGLLDCVHNK-VRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-Y---  633 (876)
T ss_dssp             CCCBCCCHHHHTTCTTCCEEECTTSC-CCBCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-S---
T ss_pred             cCCccCChhhhhcCCCCCEEECCCCC-cccchhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC-c---
Confidence            7652222  23345789999998886 44332 1 247899999887743   334667777 999999776433 1   


Q ss_pred             hhhhhccCC--CceEEEEeecccccccchhcccccccCCC--CCCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEE
Q 013265          264 LCQHSIFLV--QLHTLKLDTCHLLIGDSEYRAGRYLHDIP--EMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLK  339 (446)
Q Consensus       264 l~~~l~~l~--~l~~L~L~~~~~~~~~~~~~~~~~~~~~~--~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~  339 (446)
                      +...+...+  +|+.|.++.+.+.-.     ...++....  ..++|+.|+|..+.-. .++  ..++..+++|+.|++.
T Consensus       634 lp~~~~~~~~~~L~~L~Ls~N~l~g~-----ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp--~~~~~~l~~L~~L~Ls  705 (876)
T 4ecn_A          634 IPNIFNAKSVYVMGSVDFSYNKIGSE-----GRNISCSMDDYKGINASTVTLSYNEIQ-KFP--TELFATGSPISTIILS  705 (876)
T ss_dssp             CCSCCCTTCSSCEEEEECCSSCTTTT-----SSSCSSCTTTCCCCCEEEEECCSSCCC-SCC--HHHHHTTCCCSEEECC
T ss_pred             CchhhhccccCCCCEEECcCCcCCCc-----cccchhhhccccCCCcCEEEccCCcCC-ccC--HHHHccCCCCCEEECC
Confidence            113333343  488888887533110     011111222  2347888888877522 211  2345678888888885


Q ss_pred             E
Q 013265          340 L  340 (446)
Q Consensus       340 ~  340 (446)
                      .
T Consensus       706 ~  706 (876)
T 4ecn_A          706 N  706 (876)
T ss_dssp             S
T ss_pred             C
Confidence            4

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.10  E-value=3.1e-06  Score=84.25  Aligned_cols=220  Identities=15%  Similarity=0.049  Sum_probs=144.0

Q ss_pred             HHcCCcEEEEeeeccccccccccccccccccCCccccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCce
Q 013265          118 LERRVRRLELDFSRVVYNLRFVGQYTFPSHLDFYSSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSL  197 (446)
Q Consensus       118 ~~~~l~~L~l~~~~~~~~~~~~~~~~lp~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~  197 (446)
                      .-+.+++|.+.....         -.+|    ....+++|++|+|+++.+++-.    +.. +++|++|++.++...+ +
T Consensus        40 ~l~~L~~L~Ls~n~l---------~~~~----~l~~l~~L~~L~Ls~n~l~~~~----~~~-l~~L~~L~Ls~N~l~~-~  100 (457)
T 3bz5_A           40 QLATLTSLDCHNSSI---------TDMT----GIEKLTGLTKLICTSNNITTLD----LSQ-NTNLTYLACDSNKLTN-L  100 (457)
T ss_dssp             HHTTCCEEECCSSCC---------CCCT----TGGGCTTCSEEECCSSCCSCCC----CTT-CTTCSEEECCSSCCSC-C
T ss_pred             HcCCCCEEEccCCCc---------ccCh----hhcccCCCCEEEccCCcCCeEc----ccc-CCCCCEEECcCCCCce-e
Confidence            345788887754321         1233    3457899999999998887642    677 9999999999886433 3


Q ss_pred             eEeCCcCccceEEeeccCCCCeEEEE-CCceeEEEEccccc-ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCce
Q 013265          198 KVSGPSLKLKHLKLNKLDNLKDLQLH-APNLLSFEYSGPIL-PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLH  275 (446)
Q Consensus       198 ~i~~~~~~L~~L~i~~~~~l~~~~i~-~p~L~~l~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~  275 (446)
                      .+ ..+++|++|.++++. +..+.+. .++|++|++.++.. .+.++++++|+.+++..+..-   ..  --+..+++|+
T Consensus       101 ~~-~~l~~L~~L~L~~N~-l~~l~~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~---~~--~~~~~l~~L~  173 (457)
T 3bz5_A          101 DV-TPLTKLTYLNCDTNK-LTKLDVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKI---TK--LDVTPQTQLT  173 (457)
T ss_dssp             CC-TTCTTCCEEECCSSC-CSCCCCTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCC---CC--CCCTTCTTCC
T ss_pred             ec-CCCCcCCEEECCCCc-CCeecCCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCcc---cc--cccccCCcCC
Confidence            33 345889999999886 5555432 48899999888753 345778899999999765210   10  1245788999


Q ss_pred             EEEEeecccccccchhcccccccCCCCCCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEEecccccccccccccc
Q 013265          276 TLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTI  355 (446)
Q Consensus       276 ~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~  355 (446)
                      .|++..+.+.         .++  +..+++|+.|.+..+.-...      -+..+|+|+.|++...   .      +..+
T Consensus       174 ~L~ls~n~l~---------~l~--l~~l~~L~~L~l~~N~l~~~------~l~~l~~L~~L~Ls~N---~------l~~i  227 (457)
T 3bz5_A          174 TLDCSFNKIT---------ELD--VSQNKLLNRLNCDTNNITKL------DLNQNIQLTFLDCSSN---K------LTEI  227 (457)
T ss_dssp             EEECCSSCCC---------CCC--CTTCTTCCEEECCSSCCSCC------CCTTCTTCSEEECCSS---C------CSCC
T ss_pred             EEECCCCccc---------eec--cccCCCCCEEECcCCcCCee------ccccCCCCCEEECcCC---c------cccc
Confidence            9999885321         122  56788999999988752111      1577899999998532   1      2222


Q ss_pred             cCCCCccccccCCCcEEEEEeee--cCcchHHHHHHHHhcCccccceEEec
Q 013265          356 KDQPYLSFTELRSIRVVELLGFV--GHTADFELVMYLIFSAKLLEKIIIDP  404 (446)
Q Consensus       356 p~c~~~~~~~l~~L~~v~i~~~~--g~~~e~~~~~~ll~~a~~Le~l~i~~  404 (446)
                      |-.      .+.+|+++.+.+-.  +..         ....+.|+.+.+..
T Consensus       228 p~~------~l~~L~~L~l~~N~l~~~~---------~~~l~~L~~L~l~~  263 (457)
T 3bz5_A          228 DVT------PLTQLTYFDCSVNPLTELD---------VSTLSKLTTLHCIQ  263 (457)
T ss_dssp             CCT------TCTTCSEEECCSSCCSCCC---------CTTCTTCCEEECTT
T ss_pred             Ccc------ccCCCCEEEeeCCcCCCcC---------HHHCCCCCEEeccC
Confidence            311      23789999988643  321         24456666555443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.10  E-value=1.6e-05  Score=81.22  Aligned_cols=220  Identities=10%  Similarity=0.091  Sum_probs=126.9

Q ss_pred             ccccccceEEEEEEeChHHHHHHHhc-CCCCcceeeEeccCCCCcee--E-e---CC-----------------------
Q 013265          153 SFRHLTDLSLTTVGITGEVLEHLLCY-CCPVLEVLNVAESSSLTSLK--V-S---GP-----------------------  202 (446)
Q Consensus       153 ~~~~L~~L~L~~~~~~~~~l~~ll~~-~cp~Le~L~L~~c~~~~~~~--i-~---~~-----------------------  202 (446)
                      .+++|+.|.|.++.+++..+..+... ..+.|++|++.+|...+.+.  + .   ..                       
T Consensus       247 ~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~  326 (562)
T 3a79_B          247 RGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYS  326 (562)
T ss_dssp             SCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHH
T ss_pred             ccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhh
Confidence            34566667777777776655444332 15689999998875332110  0 0   00                       


Q ss_pred             ---cCccceEEeeccCCCCeEE--EECCceeEEEEccccc----ccccCCCCCcceEEecccchhhhhhhhhhhhccCCC
Q 013265          203 ---SLKLKHLKLNKLDNLKDLQ--LHAPNLLSFEYSGPIL----PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQ  273 (446)
Q Consensus       203 ---~~~L~~L~i~~~~~l~~~~--i~~p~L~~l~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~  273 (446)
                         ..+|++|.+.++. +..+.  -..++|++|++.++..    +..+.++++|+.+++..+..... ..+...+..+++
T Consensus       327 ~~~~~~L~~L~l~~n~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~~~l~~  404 (562)
T 3a79_B          327 VFAEMNIKMLSISDTP-FIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNF-FKVALMTKNMSS  404 (562)
T ss_dssp             HHHTCCCSEEEEESSC-CCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBT-THHHHTTTTCTT
T ss_pred             hhccCcceEEEccCCC-cccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCc-ccchhhhcCCCC
Confidence               0235555555554 22222  2357888888877632    34566788888888876543311 112245677888


Q ss_pred             ceEEEEeecccccccchhcccccccCCCCCCcccEEEEEecCCCCCHHHHHHHHhhC-CCceEEEEEEeccccccccccc
Q 013265          274 LHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTPKVNDLIFCIALLEAA-PSLYKFSLKLVSQYDYESYESV  352 (446)
Q Consensus       274 l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~ll~~~-p~L~~L~l~~~~~~~~~~~~~~  352 (446)
                      |+.|+++.+.+..       ..-...+..+++|++|.+..+.-...      +.... ++|+.|+++..         .+
T Consensus       405 L~~L~l~~N~l~~-------~~~~~~~~~l~~L~~L~l~~n~l~~~------~~~~l~~~L~~L~L~~N---------~l  462 (562)
T 3a79_B          405 LETLDVSLNSLNS-------HAYDRTCAWAESILVLNLSSNMLTGS------VFRCLPPKVKVLDLHNN---------RI  462 (562)
T ss_dssp             CCEEECTTSCCBS-------CCSSCCCCCCTTCCEEECCSSCCCGG------GGSSCCTTCSEEECCSS---------CC
T ss_pred             CCEEECCCCcCCC-------ccChhhhcCcccCCEEECCCCCCCcc------hhhhhcCcCCEEECCCC---------cC
Confidence            8888888743311       01112345678889998887752221      12333 68999988432         22


Q ss_pred             ccccCCCCccccccCCCcEEEEEeee--cCcchHHHHHHHHhcCccccceEEecCC
Q 013265          353 KTIKDQPYLSFTELRSIRVVELLGFV--GHTADFELVMYLIFSAKLLEKIIIDPCP  406 (446)
Q Consensus       353 ~~~p~c~~~~~~~l~~L~~v~i~~~~--g~~~e~~~~~~ll~~a~~Le~l~i~~~~  406 (446)
                      ..+|....    .+.+|+++.+.+-.  +...+      .+.+.+.|+.+.+....
T Consensus       463 ~~ip~~~~----~l~~L~~L~L~~N~l~~l~~~------~~~~l~~L~~L~l~~N~  508 (562)
T 3a79_B          463 MSIPKDVT----HLQALQELNVASNQLKSVPDG------VFDRLTSLQYIWLHDNP  508 (562)
T ss_dssp             CCCCTTTT----SSCCCSEEECCSSCCCCCCTT------STTTCTTCCCEECCSCC
T ss_pred             cccChhhc----CCCCCCEEECCCCCCCCCCHH------HHhcCCCCCEEEecCCC
Confidence            23444322    45889999998743  22222      24677899998887654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.09  E-value=2.6e-06  Score=79.43  Aligned_cols=147  Identities=20%  Similarity=0.148  Sum_probs=78.4

Q ss_pred             ccccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeEeCCcCccceEEeeccCCCCeEEEECCceeEE
Q 013265          151 YSSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQLHAPNLLSF  230 (446)
Q Consensus       151 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~l~~~~i~~p~L~~l  230 (446)
                      ...+++|++|+|+++.+++-.  . +.. +++|+.|.+.++.... +.-...+++|++|.++++. +..+          
T Consensus        64 ~~~l~~L~~L~L~~n~l~~~~--~-l~~-l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~L~~n~-i~~~----------  127 (291)
T 1h6t_A           64 IQYLPNVTKLFLNGNKLTDIK--P-LAN-LKNLGWLFLDENKVKD-LSSLKDLKKLKSLSLEHNG-ISDI----------  127 (291)
T ss_dssp             GGGCTTCCEEECCSSCCCCCG--G-GTT-CTTCCEEECCSSCCCC-GGGGTTCTTCCEEECTTSC-CCCC----------
T ss_pred             HhcCCCCCEEEccCCccCCCc--c-ccc-CCCCCEEECCCCcCCC-ChhhccCCCCCEEECCCCc-CCCC----------
Confidence            446778888888877766432  1 667 8888888887765332 2112233566666666654 3222          


Q ss_pred             EEcccccccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEE
Q 013265          231 EYSGPILPFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLE  310 (446)
Q Consensus       231 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  310 (446)
                              -.+.++++|+.++++.+.....     ..+..+++|+.|.+.++.+.         ... .+..+++|++|.
T Consensus       128 --------~~l~~l~~L~~L~l~~n~l~~~-----~~l~~l~~L~~L~L~~N~l~---------~~~-~l~~l~~L~~L~  184 (291)
T 1h6t_A          128 --------NGLVHLPQLESLYLGNNKITDI-----TVLSRLTKLDTLSLEDNQIS---------DIV-PLAGLTKLQNLY  184 (291)
T ss_dssp             --------GGGGGCTTCCEEECCSSCCCCC-----GGGGGCTTCSEEECCSSCCC---------CCG-GGTTCTTCCEEE
T ss_pred             --------hhhcCCCCCCEEEccCCcCCcc-----hhhccCCCCCEEEccCCccc---------cch-hhcCCCccCEEE
Confidence                    1233455555555554422111     23455666666666653221         111 144566666666


Q ss_pred             EEecCCCCCHHHHHHHHhhCCCceEEEEEEe
Q 013265          311 IIGTPKVNDLIFCIALLEAAPSLYKFSLKLV  341 (446)
Q Consensus       311 L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~  341 (446)
                      +..+.-. ++.    -+..+++|+.|++...
T Consensus       185 L~~N~i~-~l~----~l~~l~~L~~L~l~~n  210 (291)
T 1h6t_A          185 LSKNHIS-DLR----ALAGLKNLDVLELFSQ  210 (291)
T ss_dssp             CCSSCCC-BCG----GGTTCTTCSEEEEEEE
T ss_pred             CCCCcCC-CCh----hhccCCCCCEEECcCC
Confidence            6665311 111    1456677777776543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.08  E-value=4.9e-07  Score=94.00  Aligned_cols=74  Identities=12%  Similarity=0.052  Sum_probs=37.5

Q ss_pred             cceEEeeccCCCCeEEE--E---CCceeEEEEccccc----ccccC-------CCCCcceEEecccchhhhhhhhhhhhc
Q 013265          206 LKHLKLNKLDNLKDLQL--H---APNLLSFEYSGPIL----PFSFR-------NVPNLVDASFWGCFSAYIAKNLCQHSI  269 (446)
Q Consensus       206 L~~L~i~~~~~l~~~~i--~---~p~L~~l~~~~~~~----~~~~~-------~~~~L~~l~l~~~~~~~~~~~l~~~l~  269 (446)
                      |++|.++++. +..+.-  .   .++|+.|++.++..    +..+.       ..++|+.+++..+.+.....   .+..
T Consensus       379 L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~---~~~~  454 (636)
T 4eco_A          379 VENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPK---ELFS  454 (636)
T ss_dssp             CCEEECCSSC-CSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCT---HHHH
T ss_pred             CcEEEccCCc-CcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCH---HHHc
Confidence            6666666554 322210  1   13566776665532    12233       45567777776553332111   3445


Q ss_pred             cCCCceEEEEeecc
Q 013265          270 FLVQLHTLKLDTCH  283 (446)
Q Consensus       270 ~l~~l~~L~L~~~~  283 (446)
                      .+++|+.|.+..+.
T Consensus       455 ~l~~L~~L~Ls~N~  468 (636)
T 4eco_A          455 TGSPLSSINLMGNM  468 (636)
T ss_dssp             TTCCCSEEECCSSC
T ss_pred             cCCCCCEEECCCCC
Confidence            56777777777643

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.08  E-value=3.9e-06  Score=77.41  Aligned_cols=212  Identities=16%  Similarity=0.112  Sum_probs=119.9

Q ss_pred             ccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCcee-EeCCcCccceEEeeccCCCCeEEE----ECCceeE
Q 013265          155 RHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLK-VSGPSLKLKHLKLNKLDNLKDLQL----HAPNLLS  229 (446)
Q Consensus       155 ~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~-i~~~~~~L~~L~i~~~~~l~~~~i----~~p~L~~  229 (446)
                      ++|++|+|++..+++-.. ..+.+ +++|++|++.++....... ....+++|++|.++++. +..+..    ..++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~-~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~  104 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGS-YSFFS-FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQK  104 (276)
T ss_dssp             TTCCEEECTTCCCCEECT-TTTTT-CTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCE
T ss_pred             CCccEEECCCCcccccCH-hHhcc-ccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc-cCccChhhhcCCccccE
Confidence            579999999887764321 13677 9999999999985332111 12244789999998886 554432    2478888


Q ss_pred             EEEccccc----ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCc
Q 013265          230 FEYSGPIL----PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCN  305 (446)
Q Consensus       230 l~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (446)
                      |++.+...    +..+.++++|+.+++..+.....  .+...+..+++|+.|++.++.+..        ..+..+..+++
T Consensus       105 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~l~~~~~~l~~L~~L~Ls~N~l~~--------~~~~~~~~l~~  174 (276)
T 2z62_A          105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF--KLPEYFSNLTNLEHLDLSSNKIQS--------IYCTDLRVLHQ  174 (276)
T ss_dssp             EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC--CCCGGGGGCTTCCEEECCSSCCCE--------ECGGGGHHHHT
T ss_pred             EECCCCCccccCchhcccCCCCCEEECcCCcccee--cCchhhccCCCCCEEECCCCCCCc--------CCHHHhhhhhh
Confidence            88877632    23466788888888876533211  112456778888888888743311        00112223344


Q ss_pred             cc----EEEEEecCCCCCHHHHHHHHhhCCCceEEEEEEecccccccccccccccCCCCccccccCCCcEEEEEe--eec
Q 013265          306 LK----HLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTIKDQPYLSFTELRSIRVVELLG--FVG  379 (446)
Q Consensus       306 L~----~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~p~c~~~~~~~l~~L~~v~i~~--~~g  379 (446)
                      |+    +|.+..+.-. .   +..-.-..++|+.|++...         .+..+|..   .+..+.+|+++.+.+  +.+
T Consensus       175 L~~l~l~L~ls~n~l~-~---~~~~~~~~~~L~~L~L~~n---------~l~~~~~~---~~~~l~~L~~L~l~~N~~~c  238 (276)
T 2z62_A          175 MPLLNLSLDLSLNPMN-F---IQPGAFKEIRLKELALDTN---------QLKSVPDG---IFDRLTSLQKIWLHTNPWDC  238 (276)
T ss_dssp             CTTCCEEEECCSSCCC-E---ECTTSSCSCCEEEEECCSS---------CCSCCCTT---TTTTCCSCCEEECCSSCBCC
T ss_pred             ccccceeeecCCCccc-c---cCccccCCCcccEEECCCC---------ceeecCHh---HhcccccccEEEccCCcccc
Confidence            44    5555544311 0   0001122347888877432         12222221   111347888888876  555


Q ss_pred             CcchHHHHHHHHhcCc
Q 013265          380 HTADFELVMYLIFSAK  395 (446)
Q Consensus       380 ~~~e~~~~~~ll~~a~  395 (446)
                      ....+.++...++...
T Consensus       239 ~c~~l~~l~~~~~~~~  254 (276)
T 2z62_A          239 SCPRIDYLSRWLNKNS  254 (276)
T ss_dssp             CTTTTHHHHHHHHHTG
T ss_pred             cCCchHHHHHHHHhcc
Confidence            5555666555555443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.05  E-value=1.2e-05  Score=86.29  Aligned_cols=102  Identities=13%  Similarity=0.040  Sum_probs=51.4

Q ss_pred             CceeEEEEccccc----ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCC
Q 013265          225 PNLLSFEYSGPIL----PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDI  300 (446)
Q Consensus       225 p~L~~l~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~  300 (446)
                      ++|+.|++.++..    +..+.++++|+.+++..+.......   ..+..+++|+.|+++.+.+.        ...+..+
T Consensus       266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~---~~~~~l~~L~~L~Ls~N~l~--------~~~~~~~  334 (844)
T 3j0a_A          266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIAD---EAFYGLDNLQVLNLSYNLLG--------ELYSSNF  334 (844)
T ss_dssp             SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECT---TTTTTCSSCCEEEEESCCCS--------CCCSCSC
T ss_pred             CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCCh---HHhcCCCCCCEEECCCCCCC--------ccCHHHh
Confidence            4566666655422    2335566667777765543322212   34456667777777663221        1113344


Q ss_pred             CCCCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEE
Q 013265          301 PEMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKL  340 (446)
Q Consensus       301 ~~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~  340 (446)
                      ..+++|+.|++..+.-. .+.  ...+..+++|+.|++..
T Consensus       335 ~~l~~L~~L~L~~N~i~-~~~--~~~~~~l~~L~~L~Ls~  371 (844)
T 3j0a_A          335 YGLPKVAYIDLQKNHIA-IIQ--DQTFKFLEKLQTLDLRD  371 (844)
T ss_dssp             SSCTTCCEEECCSCCCC-CCC--SSCSCSCCCCCEEEEET
T ss_pred             cCCCCCCEEECCCCCCC-ccC--hhhhcCCCCCCEEECCC
Confidence            55666666666655310 000  01235566777777643

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.04  E-value=2.8e-06  Score=84.16  Aligned_cols=37  Identities=19%  Similarity=0.200  Sum_probs=15.9

Q ss_pred             ccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEecc
Q 013265          153 SFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAES  191 (446)
Q Consensus       153 ~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c  191 (446)
                      ++++|++|+|.+..++.-. ...+.. +++|++|++.++
T Consensus       110 ~l~~L~~L~L~~n~l~~~~-~~~~~~-l~~L~~L~L~~N  146 (440)
T 3zyj_A          110 GLANLNTLELFDNRLTTIP-NGAFVY-LSKLKELWLRNN  146 (440)
T ss_dssp             TCSSCCEEECCSSCCSSCC-TTTSCS-CSSCCEEECCSC
T ss_pred             CCccCCEEECCCCcCCeeC-HhHhhc-cccCceeeCCCC
Confidence            3445555555544433210 112334 555555555544

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.03  E-value=2.6e-06  Score=78.44  Aligned_cols=82  Identities=18%  Similarity=0.137  Sum_probs=49.6

Q ss_pred             ccccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCce-eEeCCcCccceEEeeccCCCCeEEE----ECC
Q 013265          151 YSSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSL-KVSGPSLKLKHLKLNKLDNLKDLQL----HAP  225 (446)
Q Consensus       151 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~-~i~~~~~~L~~L~i~~~~~l~~~~i----~~p  225 (446)
                      ..++++|++|+|.+..++.- ...++.. +++|++|++.++...... .....+++|++|.+.++. +..+..    ..+
T Consensus        57 ~~~l~~L~~L~l~~n~l~~i-~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~  133 (270)
T 2o6q_A           57 FHRLTKLRLLYLNDNKLQTL-PAGIFKE-LKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLT  133 (270)
T ss_dssp             SSSCTTCCEEECCSSCCSCC-CTTTTSS-CTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCT
T ss_pred             hcCCCCCCEEECCCCccCee-ChhhhcC-CCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCc-cCeeCHHHhCcCc
Confidence            35689999999998776532 1234577 999999999987643221 112234677777777765 332211    234


Q ss_pred             ceeEEEEccc
Q 013265          226 NLLSFEYSGP  235 (446)
Q Consensus       226 ~L~~l~~~~~  235 (446)
                      +|++|++.++
T Consensus       134 ~L~~L~Ls~n  143 (270)
T 2o6q_A          134 KLTYLSLGYN  143 (270)
T ss_dssp             TCCEEECCSS
T ss_pred             CCCEEECCCC
Confidence            5555555444

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.02  E-value=1.9e-06  Score=88.74  Aligned_cols=121  Identities=21%  Similarity=0.147  Sum_probs=66.0

Q ss_pred             ccccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeEeCCcCccceEEeeccCCCCeEE--EECCcee
Q 013265          151 YSSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQ--LHAPNLL  228 (446)
Q Consensus       151 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~l~~~~--i~~p~L~  228 (446)
                      ...+++|+.|+|+++.+++-.-   +.. +++|+.|.|.+|.... +.....+++|+.|.+.++. +..+.  ...++|+
T Consensus        61 l~~l~~L~~L~Ls~N~l~~~~~---l~~-l~~L~~L~Ls~N~l~~-l~~l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~  134 (605)
T 1m9s_A           61 IQYLPNVTKLFLNGNKLTDIKP---LTN-LKNLGWLFLDENKIKD-LSSLKDLKKLKSLSLEHNG-ISDINGLVHLPQLE  134 (605)
T ss_dssp             GGGCTTCCEEECTTSCCCCCGG---GGG-CTTCCEEECCSSCCCC-CTTSTTCTTCCEEECTTSC-CCCCGGGGGCTTCS
T ss_pred             HccCCCCCEEEeeCCCCCCChh---hcc-CCCCCEEECcCCCCCC-ChhhccCCCCCEEEecCCC-CCCCccccCCCccC
Confidence            4567888888888777664321   667 8888888888775432 2112234677777777765 33321  1235566


Q ss_pred             EEEEcccccc--cccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeec
Q 013265          229 SFEYSGPILP--FSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTC  282 (446)
Q Consensus       229 ~l~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~  282 (446)
                      .|.+.++...  -.+..+++|+.++++.+.+....    . +..+++|+.|.|.++
T Consensus       135 ~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~----~-l~~l~~L~~L~Ls~N  185 (605)
T 1m9s_A          135 SLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV----P-LAGLTKLQNLYLSKN  185 (605)
T ss_dssp             EEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCG----G-GTTCTTCCEEECCSS
T ss_pred             EEECCCCccCCchhhcccCCCCEEECcCCcCCCch----h-hccCCCCCEEECcCC
Confidence            6665555321  22345555555555544222110    1 445555555555553

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.01  E-value=2.3e-06  Score=89.65  Aligned_cols=35  Identities=11%  Similarity=0.109  Sum_probs=19.6

Q ss_pred             ccCCCcEEEEEee--ecCcchHHHHHHHHhcCccccceEEecC
Q 013265          365 ELRSIRVVELLGF--VGHTADFELVMYLIFSAKLLEKIIIDPC  405 (446)
Q Consensus       365 ~l~~L~~v~i~~~--~g~~~e~~~~~~ll~~a~~Le~l~i~~~  405 (446)
                      .+.+|+++.+.+-  .+....      .+.+.+.|+.+.+...
T Consensus       558 ~l~~L~~L~Ls~N~l~~l~~~------~~~~l~~L~~L~L~~N  594 (680)
T 1ziw_A          558 DLFELKIIDLGLNNLNTLPAS------VFNNQVSLKSLNLQKN  594 (680)
T ss_dssp             TCTTCCEEECCSSCCCCCCTT------TTTTCTTCCEEECTTS
T ss_pred             cccCcceeECCCCCCCcCCHh------HhCCCCCCCEEECCCC
Confidence            4567777777542  222111      2356677887777665

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.00  E-value=6.2e-06  Score=82.04  Aligned_cols=176  Identities=15%  Similarity=0.112  Sum_probs=127.1

Q ss_pred             cCCcEEEEeeeccccccccccccccccccCCccccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeE
Q 013265          120 RRVRRLELDFSRVVYNLRFVGQYTFPSHLDFYSSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKV  199 (446)
Q Consensus       120 ~~l~~L~l~~~~~~~~~~~~~~~~lp~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i  199 (446)
                      ++++.|.+.....         -.+|     ...+++|++|+|++..+++-.    +.. +++|++|++.++.... +.+
T Consensus        64 ~~L~~L~Ls~n~l---------~~~~-----~~~l~~L~~L~Ls~N~l~~~~----~~~-l~~L~~L~L~~N~l~~-l~~  123 (457)
T 3bz5_A           64 TGLTKLICTSNNI---------TTLD-----LSQNTNLTYLACDSNKLTNLD----VTP-LTKLTYLNCDTNKLTK-LDV  123 (457)
T ss_dssp             TTCSEEECCSSCC---------SCCC-----CTTCTTCSEEECCSSCCSCCC----CTT-CTTCCEEECCSSCCSC-CCC
T ss_pred             CCCCEEEccCCcC---------CeEc-----cccCCCCCEEECcCCCCceee----cCC-CCcCCEEECCCCcCCe-ecC
Confidence            4788887754321         1122     457899999999998887642    677 9999999999985433 343


Q ss_pred             eCCcCccceEEeeccCCCCeEEE-ECCceeEEEEcccc--cccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceE
Q 013265          200 SGPSLKLKHLKLNKLDNLKDLQL-HAPNLLSFEYSGPI--LPFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHT  276 (446)
Q Consensus       200 ~~~~~~L~~L~i~~~~~l~~~~i-~~p~L~~l~~~~~~--~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~  276 (446)
                       ..+++|++|.+.++. +..+.+ ..++|+.|++.++.  ..+.+..+++|+.+++..+.....     . +..+++++.
T Consensus       124 -~~l~~L~~L~l~~N~-l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l-----~-l~~l~~L~~  195 (457)
T 3bz5_A          124 -SQNPLLTYLNCARNT-LTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITEL-----D-VSQNKLLNR  195 (457)
T ss_dssp             -TTCTTCCEEECTTSC-CSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCC-----C-CTTCTTCCE
T ss_pred             -CCCCcCCEEECCCCc-cceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCcccee-----c-cccCCCCCE
Confidence             345899999999887 555543 35899999998873  234677899999999987643321     2 567899999


Q ss_pred             EEEeecccccccchhcccccccCCCCCCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEE
Q 013265          277 LKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKL  340 (446)
Q Consensus       277 L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~  340 (446)
                      |.+..+.+.         ..  .+..+++|+.|++..+.-.. ++     +..+++|+.|++..
T Consensus       196 L~l~~N~l~---------~~--~l~~l~~L~~L~Ls~N~l~~-ip-----~~~l~~L~~L~l~~  242 (457)
T 3bz5_A          196 LNCDTNNIT---------KL--DLNQNIQLTFLDCSSNKLTE-ID-----VTPLTQLTYFDCSV  242 (457)
T ss_dssp             EECCSSCCS---------CC--CCTTCTTCSEEECCSSCCSC-CC-----CTTCTTCSEEECCS
T ss_pred             EECcCCcCC---------ee--ccccCCCCCEEECcCCcccc-cC-----ccccCCCCEEEeeC
Confidence            999885331         11  35678999999999885222 21     67899999999954

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=97.99  E-value=3.7e-06  Score=78.35  Aligned_cols=163  Identities=19%  Similarity=0.137  Sum_probs=102.3

Q ss_pred             cccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeEeCCcCccceEEeeccCCCCeEEE----ECCce
Q 013265          152 SSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQL----HAPNL  227 (446)
Q Consensus       152 ~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~l~~~~i----~~p~L  227 (446)
                      ..+++|+.|.|.+..++.-..   ... +++|+.|++.++...........+++|+.|.++++. +..+..    ..++|
T Consensus        52 ~~l~~L~~L~L~~n~l~~~~~---~~~-l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L  126 (290)
T 1p9a_G           52 MPYTRLTQLNLDRAELTKLQV---DGT-LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGEL  126 (290)
T ss_dssp             TTCTTCCEEECTTSCCCEEEC---CSC-CTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTC
T ss_pred             hcCCCCCEEECCCCccCcccC---CCC-CCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCC
Confidence            467899999998877664211   156 999999999988654322323345788888888875 443321    24778


Q ss_pred             eEEEEccccc----ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCC
Q 013265          228 LSFEYSGPIL----PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEM  303 (446)
Q Consensus       228 ~~l~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~  303 (446)
                      ++|.+.+...    +..+..+++|+.+++..+.+.....   ..+..+++|+.|.+.++.+.         .++..+...
T Consensus       127 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~---~~~~~l~~L~~L~L~~N~l~---------~ip~~~~~~  194 (290)
T 1p9a_G          127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPA---GLLNGLENLDTLLLQENSLY---------TIPKGFFGS  194 (290)
T ss_dssp             CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCT---TTTTTCTTCCEEECCSSCCC---------CCCTTTTTT
T ss_pred             CEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCH---HHhcCcCCCCEEECCCCcCC---------ccChhhccc
Confidence            8888877643    2234567788888887654432222   45567788888888774321         234444556


Q ss_pred             CcccEEEEEecC--CCCCHHHHHHHHhhCC
Q 013265          304 CNLKHLEIIGTP--KVNDLIFCIALLEAAP  331 (446)
Q Consensus       304 ~~L~~L~L~~~~--~~~~~~~l~~ll~~~p  331 (446)
                      .+|++|.|.++.  -..++.++...++.-+
T Consensus       195 ~~L~~l~L~~Np~~C~c~~~~l~~wl~~~~  224 (290)
T 1p9a_G          195 HLLPFAFLHGNPWLCNCEILYFRRWLQDNA  224 (290)
T ss_dssp             CCCSEEECCSCCBCCSGGGHHHHHHHHHTG
T ss_pred             ccCCeEEeCCCCccCcCccHHHHHHHHhCc
Confidence            678888887774  2234445555555443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=97.93  E-value=0.00013  Score=78.40  Aligned_cols=118  Identities=14%  Similarity=0.062  Sum_probs=78.0

Q ss_pred             CccceEEeeccCCCCeEE----EECCceeEEEEccccc----ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCce
Q 013265          204 LKLKHLKLNKLDNLKDLQ----LHAPNLLSFEYSGPIL----PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLH  275 (446)
Q Consensus       204 ~~L~~L~i~~~~~l~~~~----i~~p~L~~l~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~  275 (446)
                      ++|+.|.++++. +..+.    -..++|+.|++.++..    +..+.++++|+.+++..+.......   ..+..+++|+
T Consensus       266 ~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~  341 (844)
T 3j0a_A          266 SSVRHLDLSHGF-VFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYS---SNFYGLPKVA  341 (844)
T ss_dssp             SCCCEEECTTCC-CCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCS---CSCSSCTTCC
T ss_pred             CCccEEECCCCc-ccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCH---HHhcCCCCCC
Confidence            356666665554 33221    1348999999988743    3457789999999998764432222   4567889999


Q ss_pred             EEEEeecccccccchhcccccccCCCCCCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEEe
Q 013265          276 TLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLV  341 (446)
Q Consensus       276 ~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~  341 (446)
                      .|++..+.+.        ...+..+..+++|++|.+..+.-. .       +..+|+|+.|.+...
T Consensus       342 ~L~L~~N~i~--------~~~~~~~~~l~~L~~L~Ls~N~l~-~-------i~~~~~L~~L~l~~N  391 (844)
T 3j0a_A          342 YIDLQKNHIA--------IIQDQTFKFLEKLQTLDLRDNALT-T-------IHFIPSIPDIFLSGN  391 (844)
T ss_dssp             EEECCSCCCC--------CCCSSCSCSCCCCCEEEEETCCSC-C-------CSSCCSCSEEEEESC
T ss_pred             EEECCCCCCC--------ccChhhhcCCCCCCEEECCCCCCC-c-------ccCCCCcchhccCCC
Confidence            9999985331        111334667899999999988521 1       123889999998654

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=97.92  E-value=1.1e-05  Score=72.61  Aligned_cols=186  Identities=13%  Similarity=0.090  Sum_probs=113.2

Q ss_pred             CCcEEEEeeeccccccccccccccccccCCccccccccceEEEEEE-eChHHHHHHHhcCCCCcceeeEeccCCCCcee-
Q 013265          121 RVRRLELDFSRVVYNLRFVGQYTFPSHLDFYSSFRHLTDLSLTTVG-ITGEVLEHLLCYCCPVLEVLNVAESSSLTSLK-  198 (446)
Q Consensus       121 ~l~~L~l~~~~~~~~~~~~~~~~lp~~~~~~~~~~~L~~L~L~~~~-~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~-  198 (446)
                      .+++|.+.....         -.+|...  ..++++|++|+|.+.. ++.-. ...+.+ +++|++|++.+|..+..+. 
T Consensus        32 ~l~~L~l~~n~l---------~~i~~~~--~~~l~~L~~L~l~~n~~l~~i~-~~~f~~-l~~L~~L~l~~~n~l~~i~~   98 (239)
T 2xwt_C           32 STQTLKLIETHL---------RTIPSHA--FSNLPNISRIYVSIDVTLQQLE-SHSFYN-LSKVTHIEIRNTRNLTYIDP   98 (239)
T ss_dssp             TCCEEEEESCCC---------SEECTTT--TTTCTTCCEEEEECCSSCCEEC-TTTEES-CTTCCEEEEEEETTCCEECT
T ss_pred             cccEEEEeCCcc---------eEECHHH--ccCCCCCcEEeCCCCCCcceeC-HhHcCC-CcCCcEEECCCCCCeeEcCH
Confidence            677777754321         2334322  3468899999999875 54211 112567 9999999999865555442 


Q ss_pred             -EeCCcCccceEEeeccCCCCeEE--EECCcee---EEEEccc-cc----ccccCCCCCcc-eEEecccchhhhhhhhhh
Q 013265          199 -VSGPSLKLKHLKLNKLDNLKDLQ--LHAPNLL---SFEYSGP-IL----PFSFRNVPNLV-DASFWGCFSAYIAKNLCQ  266 (446)
Q Consensus       199 -i~~~~~~L~~L~i~~~~~l~~~~--i~~p~L~---~l~~~~~-~~----~~~~~~~~~L~-~l~l~~~~~~~~~~~l~~  266 (446)
                       .-..+++|++|.+.++. +..+.  -..++|+   +|++.+. ..    +..+.++++|+ .+++..+.......   .
T Consensus        99 ~~f~~l~~L~~L~l~~n~-l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~---~  174 (239)
T 2xwt_C           99 DALKELPLLKFLGIFNTG-LKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQG---Y  174 (239)
T ss_dssp             TSEECCTTCCEEEEEEEC-CCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECT---T
T ss_pred             HHhCCCCCCCEEeCCCCC-CccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCH---h
Confidence             11234789999999875 33322  1235666   8888876 33    23467789999 99997664332212   2


Q ss_pred             hhccCCCceEEEEeecc-cccccchhcccccccCCCCC-CcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEE
Q 013265          267 HSIFLVQLHTLKLDTCH-LLIGDSEYRAGRYLHDIPEM-CNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSL  338 (446)
Q Consensus       267 ~l~~l~~l~~L~L~~~~-~~~~~~~~~~~~~~~~~~~~-~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l  338 (446)
                      .+.. ++|+.|++.++. +.        ..-...+..+ ++|++|++..+.-. .++.     ..+++|+.|.+
T Consensus       175 ~~~~-~~L~~L~L~~n~~l~--------~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~-----~~~~~L~~L~l  233 (239)
T 2xwt_C          175 AFNG-TKLDAVYLNKNKYLT--------VIDKDAFGGVYSGPSLLDVSQTSVT-ALPS-----KGLEHLKELIA  233 (239)
T ss_dssp             TTTT-CEEEEEECTTCTTCC--------EECTTTTTTCSBCCSEEECTTCCCC-CCCC-----TTCTTCSEEEC
T ss_pred             hcCC-CCCCEEEcCCCCCcc--------cCCHHHhhccccCCcEEECCCCccc-cCCh-----hHhccCceeec
Confidence            2333 789999998741 21        1112345566 89999999876411 1110     25778888877

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=97.92  E-value=5.2e-06  Score=76.39  Aligned_cols=37  Identities=30%  Similarity=0.630  Sum_probs=34.4

Q ss_pred             CcCCCCChHHHHHHHhCCChhHHH-HHhhccchhhhhc
Q 013265            6 DHINELPDDILVNILSRLTMKEAV-RTSIISSRWRYLW   42 (446)
Q Consensus         6 D~is~LPd~iL~~ILs~Lp~kd~~-rts~lSkrWr~lw   42 (446)
                      ..+..||||+|.+||++||.++++ +++.|||+|+.+-
T Consensus        49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~   86 (297)
T 2e31_A           49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELV   86 (297)
T ss_dssp             CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHH
T ss_pred             cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHh
Confidence            468899999999999999999999 9999999999863

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=97.92  E-value=5.2e-06  Score=75.49  Aligned_cols=147  Identities=20%  Similarity=0.153  Sum_probs=82.2

Q ss_pred             ccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCcee-EeCCcCccceEEeeccCCCCeEEE----ECCceeE
Q 013265          155 RHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLK-VSGPSLKLKHLKLNKLDNLKDLQL----HAPNLLS  229 (446)
Q Consensus       155 ~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~-i~~~~~~L~~L~i~~~~~l~~~~i----~~p~L~~  229 (446)
                      ++|+.|+|.+..+++.. ...+.+ +++|++|++.++....... ....+++|+.|.+.++. +..+..    ..++|++
T Consensus        35 ~~l~~L~L~~n~l~~~~-~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~  111 (251)
T 3m19_A           35 ADTEKLDLQSTGLATLS-DATFRG-LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ-LASLPLGVFDHLTQLDK  111 (251)
T ss_dssp             TTCCEEECTTSCCCCCC-TTTTTT-CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCE
T ss_pred             CCCCEEEccCCCcCccC-HhHhcC-cccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCc-ccccChhHhcccCCCCE
Confidence            57888888887765421 123567 8889999888875433211 11234678888877765 333321    2366777


Q ss_pred             EEEcccccc----cccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCc
Q 013265          230 FEYSGPILP----FSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCN  305 (446)
Q Consensus       230 l~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (446)
                      |++.+....    ..+.++++|+.+++..+.+.....   ..+..+++|+.|+|.++.+.        ...+..+..+++
T Consensus       112 L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~L~~N~l~--------~~~~~~~~~l~~  180 (251)
T 3m19_A          112 LYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA---GAFDKLTNLQTLSLSTNQLQ--------SVPHGAFDRLGK  180 (251)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT---TTTTTCTTCCEEECCSSCCS--------CCCTTTTTTCTT
T ss_pred             EEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCH---HHcCcCcCCCEEECCCCcCC--------ccCHHHHhCCCC
Confidence            776665321    224556677777776553322211   24456667777777663221        111223445667


Q ss_pred             ccEEEEEecC
Q 013265          306 LKHLEIIGTP  315 (446)
Q Consensus       306 L~~L~L~~~~  315 (446)
                      |++|.|..+.
T Consensus       181 L~~L~l~~N~  190 (251)
T 3m19_A          181 LQTITLFGNQ  190 (251)
T ss_dssp             CCEEECCSCC
T ss_pred             CCEEEeeCCc
Confidence            7777776664

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=97.91  E-value=1.8e-05  Score=71.86  Aligned_cols=167  Identities=16%  Similarity=0.107  Sum_probs=97.8

Q ss_pred             CccceEEeeccCCCCeEEE----ECCceeEEEEccccc----ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCce
Q 013265          204 LKLKHLKLNKLDNLKDLQL----HAPNLLSFEYSGPIL----PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLH  275 (446)
Q Consensus       204 ~~L~~L~i~~~~~l~~~~i----~~p~L~~l~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~  275 (446)
                      ++++.|.+.++. +..+..    ..++|++|++.+...    +..+.++++|+.+++..+.+.....   ..+..+++|+
T Consensus        35 ~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~  110 (251)
T 3m19_A           35 ADTEKLDLQSTG-LATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPL---GVFDHLTQLD  110 (251)
T ss_dssp             TTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT---TTTTTCTTCC
T ss_pred             CCCCEEEccCCC-cCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccCh---hHhcccCCCC
Confidence            456666666554 322211    236777777766532    2235678888888887664432222   4567888999


Q ss_pred             EEEEeecccccccchhcccccccCCCCCCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEEecccccccccccccc
Q 013265          276 TLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTI  355 (446)
Q Consensus       276 ~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~  355 (446)
                      .|.+.++.+.        ...+..+..+++|++|.|..+.-..-.   ...+..+++|+.|++...         .+..+
T Consensus       111 ~L~L~~N~l~--------~~~~~~~~~l~~L~~L~Ls~N~l~~~~---~~~~~~l~~L~~L~L~~N---------~l~~~  170 (251)
T 3m19_A          111 KLYLGGNQLK--------SLPSGVFDRLTKLKELRLNTNQLQSIP---AGAFDKLTNLQTLSLSTN---------QLQSV  170 (251)
T ss_dssp             EEECCSSCCC--------CCCTTTTTTCTTCCEEECCSSCCCCCC---TTTTTTCTTCCEEECCSS---------CCSCC
T ss_pred             EEEcCCCcCC--------CcChhHhccCCcccEEECcCCcCCccC---HHHcCcCcCCCEEECCCC---------cCCcc
Confidence            9999884331        111223566889999999887411110   123567899999998533         11122


Q ss_pred             cC-CCCccccccCCCcEEEEEe--eecC-cchHHHHHHHHhcCcccc
Q 013265          356 KD-QPYLSFTELRSIRVVELLG--FVGH-TADFELVMYLIFSAKLLE  398 (446)
Q Consensus       356 p~-c~~~~~~~l~~L~~v~i~~--~~g~-~~e~~~~~~ll~~a~~Le  398 (446)
                      +. .+    ..+.+|+++.+.+  +.+. ..-..+..++-++...+.
T Consensus       171 ~~~~~----~~l~~L~~L~l~~N~~~c~~~~~~~l~~~~~~~~~~~~  213 (251)
T 3m19_A          171 PHGAF----DRLGKLQTITLFGNQFDCSRCEILYLSQWIRENSNKVK  213 (251)
T ss_dssp             CTTTT----TTCTTCCEEECCSCCBCTTSTTHHHHHHHHHHSGGGBC
T ss_pred             CHHHH----hCCCCCCEEEeeCCceeCCccccHHHHHHHHhccccee
Confidence            21 11    1347899999987  4555 344456666666655443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=97.91  E-value=8.7e-06  Score=75.84  Aligned_cols=125  Identities=18%  Similarity=0.146  Sum_probs=74.0

Q ss_pred             ccccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeEeCCcCccceEEeeccCCCCeEEEECCceeEE
Q 013265          151 YSSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQLHAPNLLSF  230 (446)
Q Consensus       151 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~l~~~~i~~p~L~~l  230 (446)
                      ...+++|+.|.|.+..+++-  .. +.. +++|+.|++.+|.... +.....+++|+.|.++++. +..+.         
T Consensus        86 l~~l~~L~~L~l~~n~l~~~--~~-l~~-l~~L~~L~L~~n~i~~-~~~l~~l~~L~~L~l~~n~-l~~~~---------  150 (291)
T 1h6t_A           86 LANLKNLGWLFLDENKVKDL--SS-LKD-LKKLKSLSLEHNGISD-INGLVHLPQLESLYLGNNK-ITDIT---------  150 (291)
T ss_dssp             GTTCTTCCEEECCSSCCCCG--GG-GTT-CTTCCEEECTTSCCCC-CGGGGGCTTCCEEECCSSC-CCCCG---------
T ss_pred             cccCCCCCEEECCCCcCCCC--hh-hcc-CCCCCEEECCCCcCCC-ChhhcCCCCCCEEEccCCc-CCcch---------
Confidence            45789999999999888753  22 778 9999999999886433 2212234678888887765 33221         


Q ss_pred             EEcccccccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEE
Q 013265          231 EYSGPILPFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLE  310 (446)
Q Consensus       231 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  310 (446)
                               .+.++++|+.++++.+......    . +..+++|+.|.+.++.+.         .++ .+..+++|+.|+
T Consensus       151 ---------~l~~l~~L~~L~L~~N~l~~~~----~-l~~l~~L~~L~L~~N~i~---------~l~-~l~~l~~L~~L~  206 (291)
T 1h6t_A          151 ---------VLSRLTKLDTLSLEDNQISDIV----P-LAGLTKLQNLYLSKNHIS---------DLR-ALAGLKNLDVLE  206 (291)
T ss_dssp             ---------GGGGCTTCSEEECCSSCCCCCG----G-GTTCTTCCEEECCSSCCC---------BCG-GGTTCTTCSEEE
T ss_pred             ---------hhccCCCCCEEEccCCccccch----h-hcCCCccCEEECCCCcCC---------CCh-hhccCCCCCEEE
Confidence                     2334555555555544222110    1 455666666666653221         111 244566667776


Q ss_pred             EEec
Q 013265          311 IIGT  314 (446)
Q Consensus       311 L~~~  314 (446)
                      +..+
T Consensus       207 l~~n  210 (291)
T 1h6t_A          207 LFSQ  210 (291)
T ss_dssp             EEEE
T ss_pred             CcCC
Confidence            6665

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=97.89  E-value=1.3e-06  Score=82.93  Aligned_cols=167  Identities=13%  Similarity=0.024  Sum_probs=74.9

Q ss_pred             cccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCce-eEeCCcCccceEEeeccCCCCe--E---EEECC
Q 013265          152 SSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSL-KVSGPSLKLKHLKLNKLDNLKD--L---QLHAP  225 (446)
Q Consensus       152 ~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~-~i~~~~~~L~~L~i~~~~~l~~--~---~i~~p  225 (446)
                      .++++|++|+|.+..++.-  .  ... .++|++|++.++...... .....+++|++|.+.++. +..  +   .+...
T Consensus        99 ~~l~~L~~L~L~~n~l~~l--~--~~~-~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l  172 (332)
T 2ft3_A           99 SPLRKLQKLYISKNHLVEI--P--PNL-PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP-LENSGFEPGAFDGL  172 (332)
T ss_dssp             TTCTTCCEEECCSSCCCSC--C--SSC-CTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCC-CBGGGSCTTSSCSC
T ss_pred             hCcCCCCEEECCCCcCCcc--C--ccc-cccCCEEECCCCccCccCHhHhCCCccCCEEECCCCc-cccCCCCcccccCC
Confidence            3456666666666554421  0  011 356666666655432211 111233566666666554 211  0   01112


Q ss_pred             ceeEEEEcccccc-cccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCC
Q 013265          226 NLLSFEYSGPILP-FSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMC  304 (446)
Q Consensus       226 ~L~~l~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~  304 (446)
                      +|+.|++.++... +...-.++|+++++..+.......   ..+..+++|+.|++.++.+.        ...+..+..++
T Consensus       173 ~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~---~~l~~l~~L~~L~L~~N~l~--------~~~~~~~~~l~  241 (332)
T 2ft3_A          173 KLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIEL---EDLLRYSKLYRLGLGHNQIR--------MIENGSLSFLP  241 (332)
T ss_dssp             CCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCT---TSSTTCTTCSCCBCCSSCCC--------CCCTTGGGGCT
T ss_pred             ccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCH---HHhcCCCCCCEEECCCCcCC--------cCChhHhhCCC
Confidence            5555555544321 111112456666665442221111   23455666666666653221        01112344556


Q ss_pred             cccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEE
Q 013265          305 NLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLK  339 (446)
Q Consensus       305 ~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~  339 (446)
                      +|++|++..+.-. .   +..-+..+++|+.|++.
T Consensus       242 ~L~~L~L~~N~l~-~---lp~~l~~l~~L~~L~l~  272 (332)
T 2ft3_A          242 TLRELHLDNNKLS-R---VPAGLPDLKLLQVVYLH  272 (332)
T ss_dssp             TCCEEECCSSCCC-B---CCTTGGGCTTCCEEECC
T ss_pred             CCCEEECCCCcCe-e---cChhhhcCccCCEEECC
Confidence            6777776665311 1   11124566777777764

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=97.88  E-value=3.7e-06  Score=71.29  Aligned_cols=124  Identities=20%  Similarity=0.194  Sum_probs=52.9

Q ss_pred             ccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeEeCCcCccceEEeeccCCCCe-EE---EECCceeEE
Q 013265          155 RHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKD-LQ---LHAPNLLSF  230 (446)
Q Consensus       155 ~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~l~~-~~---i~~p~L~~l  230 (446)
                      ++|++|+|.++.+++..+...+.. +++|+.|++.+|.... +.....+++|++|.++++. +.. +.   -..++|++|
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~-l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAE-FVNLEFLSLINVGLIS-VSNLPKLPKLKKLELSENR-IFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGG-GGGCCEEEEESSCCCC-CSSCCCCSSCCEEEEESCC-CCSCCCHHHHHCTTCCEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHh-CCCCCEEeCcCCCCCC-hhhhccCCCCCEEECcCCc-CchHHHHHHhhCCCCCEE
Confidence            556666666555543333333455 5666666666554222 1111223455555555544 221 10   013444444


Q ss_pred             EEccccc---c--cccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEee
Q 013265          231 EYSGPIL---P--FSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDT  281 (446)
Q Consensus       231 ~~~~~~~---~--~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~  281 (446)
                      ++.++..   +  ..+.++++|+.+++..+.+..........+..+++|+.|++..
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~  156 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYD  156 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEE
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCC
Confidence            4444321   1  2334455555555544422211100002344555555555554

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=97.87  E-value=5.8e-06  Score=85.10  Aligned_cols=164  Identities=16%  Similarity=0.130  Sum_probs=107.5

Q ss_pred             cccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeEeCCcCccceEEeeccCCCCeEE--EECCceeE
Q 013265          152 SSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQ--LHAPNLLS  229 (446)
Q Consensus       152 ~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~l~~~~--i~~p~L~~  229 (446)
                      ..+++|+.|.|.++.+.+-  . -+.. +++|+.|.|.+|....... ...+++|+.|.+.++. +..+.  -..++|+.
T Consensus        40 ~~L~~L~~L~l~~n~i~~l--~-~l~~-l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~  113 (605)
T 1m9s_A           40 NELNSIDQIIANNSDIKSV--Q-GIQY-LPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENK-IKDLSSLKDLKKLKS  113 (605)
T ss_dssp             HHHTTCCCCBCTTCCCCCC--T-TGGG-CTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSC-CCCCTTSTTCTTCCE
T ss_pred             hcCCCCCEEECcCCCCCCC--h-HHcc-CCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCC-CCCChhhccCCCCCE
Confidence            3577888888887776542  1 1567 8999999998875433322 2344788888888875 44331  12478888


Q ss_pred             EEEcccccc--cccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCccc
Q 013265          230 FEYSGPILP--FSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLK  307 (446)
Q Consensus       230 l~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~  307 (446)
                      |.+.++...  -.+.++++|+.++++.+.+...     ..+..+++|+.|.|+.+.+.         .... +..+++|+
T Consensus       114 L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-----~~l~~l~~L~~L~Ls~N~l~---------~~~~-l~~l~~L~  178 (605)
T 1m9s_A          114 LSLEHNGISDINGLVHLPQLESLYLGNNKITDI-----TVLSRLTKLDTLSLEDNQIS---------DIVP-LAGLTKLQ  178 (605)
T ss_dssp             EECTTSCCCCCGGGGGCTTCSEEECCSSCCCCC-----GGGGSCTTCSEEECCSSCCC---------CCGG-GTTCTTCC
T ss_pred             EEecCCCCCCCccccCCCccCEEECCCCccCCc-----hhhcccCCCCEEECcCCcCC---------Cchh-hccCCCCC
Confidence            888877432  2466788888888877643221     45677888999998875331         1111 56778889


Q ss_pred             EEEEEecCCCCCHHHHHHHHhhCCCceEEEEEEe
Q 013265          308 HLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLV  341 (446)
Q Consensus       308 ~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~  341 (446)
                      +|.|..+.-. ++    .-+..+++|+.|+|...
T Consensus       179 ~L~Ls~N~i~-~l----~~l~~l~~L~~L~L~~N  207 (605)
T 1m9s_A          179 NLYLSKNHIS-DL----RALAGLKNLDVLELFSQ  207 (605)
T ss_dssp             EEECCSSCCC-BC----GGGTTCTTCSEEECCSE
T ss_pred             EEECcCCCCC-CC----hHHccCCCCCEEEccCC
Confidence            8888887421 11    23677888998888543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=97.87  E-value=2.4e-05  Score=73.47  Aligned_cols=223  Identities=12%  Similarity=0.050  Sum_probs=118.4

Q ss_pred             cccccceEEEEEEeChHHHHHHHh--cCCCCcceeeEeccCCCCcee--Ee-CCcCccceEEeeccCCCCe-------E-
Q 013265          154 FRHLTDLSLTTVGITGEVLEHLLC--YCCPVLEVLNVAESSSLTSLK--VS-GPSLKLKHLKLNKLDNLKD-------L-  220 (446)
Q Consensus       154 ~~~L~~L~L~~~~~~~~~l~~ll~--~~cp~Le~L~L~~c~~~~~~~--i~-~~~~~L~~L~i~~~~~l~~-------~-  220 (446)
                      ...++.|.+.++.+++..+..+..  . ++.|++|++.+|...+...  +. ...++|++|.++++. +..       . 
T Consensus        63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~~~~~~~~~~  140 (310)
T 4glp_A           63 ALRVRRLTVGAAQVPAQLLVGALRVLA-YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVS-WATGRSWLAELQ  140 (310)
T ss_dssp             SCCCCEEEECSCCCBHHHHHHHHHHHH-HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCC-CSSTTSSHHHHH
T ss_pred             hcceeEEEEeCCcCCHHHHHHHHHhcc-cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeeccc-ccchhhhhHHHH
Confidence            445788888888888776655433  4 6789999999987544332  21 445789999999886 322       1 


Q ss_pred             EEECCceeEEEEccccc----ccccCCCCCcceEEecccchhhh-hhhhhhhhccCCCceEEEEeecccccccchhcccc
Q 013265          221 QLHAPNLLSFEYSGPIL----PFSFRNVPNLVDASFWGCFSAYI-AKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGR  295 (446)
Q Consensus       221 ~i~~p~L~~l~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~-~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~  295 (446)
                      ....++|++|++.++..    +..+.++++|+.++++.+..... .......+..+++|+.|.++++.+...    .  .
T Consensus       141 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l----~--~  214 (310)
T 4glp_A          141 QWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETP----T--G  214 (310)
T ss_dssp             TTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCH----H--H
T ss_pred             hhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCch----H--H
Confidence            01367788888777633    23455677777777766532110 000012235667777777776433110    0  0


Q ss_pred             ccc-CCCCCCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEEecccccccccccccccCCCCccccccCCCcEEEE
Q 013265          296 YLH-DIPEMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTIKDQPYLSFTELRSIRVVEL  374 (446)
Q Consensus       296 ~~~-~~~~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~p~c~~~~~~~l~~L~~v~i  374 (446)
                      ... .+..+++|++|+|+.+.-....+.-..-+...|+|++|+++..         .+..+|....      .+|+++.+
T Consensus       215 ~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N---------~l~~lp~~~~------~~L~~L~L  279 (310)
T 4glp_A          215 VCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFA---------GLEQVPKGLP------AKLRVLDL  279 (310)
T ss_dssp             HHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSS---------CCCSCCSCCC------SCCSCEEC
T ss_pred             HHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCC---------CCCchhhhhc------CCCCEEEC
Confidence            000 1234567777777666311110000000111267777776322         2223344433      66777777


Q ss_pred             EeeecCcchHHHHHHHHhcCccccceEEecC
Q 013265          375 LGFVGHTADFELVMYLIFSAKLLEKIIIDPC  405 (446)
Q Consensus       375 ~~~~g~~~e~~~~~~ll~~a~~Le~l~i~~~  405 (446)
                      .+-.-..-..      ..+.+.|+.+.+...
T Consensus       280 s~N~l~~~~~------~~~l~~L~~L~L~~N  304 (310)
T 4glp_A          280 SSNRLNRAPQ------PDELPEVDNLTLDGN  304 (310)
T ss_dssp             CSCCCCSCCC------TTSCCCCSCEECSST
T ss_pred             CCCcCCCCch------hhhCCCccEEECcCC
Confidence            6532211000      145577777776654

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=97.86  E-value=1.8e-05  Score=66.96  Aligned_cols=133  Identities=15%  Similarity=0.058  Sum_probs=80.9

Q ss_pred             CCCcceeeEeccCCC-Cce-eEeCCcCccceEEeeccCCCCeEEEECCceeEEEEcccccccccCCCCCcceEEecccch
Q 013265          180 CPVLEVLNVAESSSL-TSL-KVSGPSLKLKHLKLNKLDNLKDLQLHAPNLLSFEYSGPILPFSFRNVPNLVDASFWGCFS  257 (446)
Q Consensus       180 cp~Le~L~L~~c~~~-~~~-~i~~~~~~L~~L~i~~~~~l~~~~i~~p~L~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~  257 (446)
                      .+.|++|++.+|... +.+ .....+++|+.|.+.++. +..+                  ..+..+++|+.+++..+.+
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~------------------~~~~~l~~L~~L~Ls~N~l   83 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV------------------SNLPKLPKLKKLELSENRI   83 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC------------------SSCCCCSSCCEEEEESCCC
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh------------------hhhccCCCCCEEECcCCcC
Confidence            577899999888643 122 122334566667666664 3222                  1345667777777766533


Q ss_pred             hhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEE
Q 013265          258 AYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFS  337 (446)
Q Consensus       258 ~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~  337 (446)
                      ....   ...+..+++|+.|.+.++.+..       ......+..+++|++|++..+.-..........+..+|+|+.|+
T Consensus        84 ~~~~---~~~~~~l~~L~~L~Ls~N~l~~-------~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~  153 (168)
T 2ell_A           84 FGGL---DMLAEKLPNLTHLNLSGNKLKD-------ISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLD  153 (168)
T ss_dssp             CSCC---CHHHHHCTTCCEEECBSSSCCS-------SGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEET
T ss_pred             chHH---HHHHhhCCCCCEEeccCCccCc-------chhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEec
Confidence            3212   2556678999999998853311       11113456788999999988752111112234678899999999


Q ss_pred             EEEe
Q 013265          338 LKLV  341 (446)
Q Consensus       338 l~~~  341 (446)
                      +...
T Consensus       154 l~~n  157 (168)
T 2ell_A          154 GYDR  157 (168)
T ss_dssp             TEET
T ss_pred             CCCC
Confidence            8654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=97.85  E-value=1.8e-05  Score=72.54  Aligned_cols=76  Identities=17%  Similarity=0.120  Sum_probs=42.2

Q ss_pred             CceeEEEEcccccc--cccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCC
Q 013265          225 PNLLSFEYSGPILP--FSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPE  302 (446)
Q Consensus       225 p~L~~l~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~  302 (446)
                      ++|+.|++.++...  -.+.++++|+.++++.+.+...     ..+..+++|+.|.+.++.+.         .. ..+..
T Consensus       106 ~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~-----~~l~~l~~L~~L~L~~N~i~---------~~-~~l~~  170 (263)
T 1xeu_A          106 ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSI-----VMLGFLSKLEVLDLHGNEIT---------NT-GGLTR  170 (263)
T ss_dssp             SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBC-----GGGGGCTTCCEEECTTSCCC---------BC-TTSTT
T ss_pred             CcccEEEccCCccCCChhhcCcccccEEECCCCcCCCC-----hHHccCCCCCEEECCCCcCc---------ch-HHhcc
Confidence            44555544444211  1355677777777765533211     23566777888887764321         11 34556


Q ss_pred             CCcccEEEEEecC
Q 013265          303 MCNLKHLEIIGTP  315 (446)
Q Consensus       303 ~~~L~~L~L~~~~  315 (446)
                      +++|+.|++..+.
T Consensus       171 l~~L~~L~l~~N~  183 (263)
T 1xeu_A          171 LKKVNWIDLTGQK  183 (263)
T ss_dssp             CCCCCEEEEEEEE
T ss_pred             CCCCCEEeCCCCc
Confidence            7777777777763

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=97.84  E-value=3.9e-06  Score=77.44  Aligned_cols=175  Identities=17%  Similarity=0.071  Sum_probs=106.3

Q ss_pred             cccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCce-eEeCCcCccceEEeeccCCCCeE---EE-ECCc
Q 013265          152 SSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSL-KVSGPSLKLKHLKLNKLDNLKDL---QL-HAPN  226 (446)
Q Consensus       152 ~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~-~i~~~~~~L~~L~i~~~~~l~~~---~i-~~p~  226 (446)
                      .++++|++|+|.++.++.-. ...+.. +++|+.|++.++...... .....+++|++|.+.++. +..+   .+ ..++
T Consensus        49 ~~l~~L~~L~l~~n~l~~~~-~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~  125 (276)
T 2z62_A           49 FSFPELQVLDLSRCEIQTIE-DGAYQS-LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKT  125 (276)
T ss_dssp             TTCTTCSEEECTTCCCCEEC-TTTTTT-CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSC-CCCSTTCCCTTCTT
T ss_pred             ccccCCcEEECCCCcCCccC-HHHccC-CcCCCEEECCCCccCccChhhhcCCccccEEECCCCC-ccccCchhcccCCC
Confidence            46788999999887665321 123567 899999999887543221 112244788999888775 3222   12 3588


Q ss_pred             eeEEEEccccc-----ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCce-EEEEeecccccccchhcccccccCC
Q 013265          227 LLSFEYSGPIL-----PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLH-TLKLDTCHLLIGDSEYRAGRYLHDI  300 (446)
Q Consensus       227 L~~l~~~~~~~-----~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~-~L~L~~~~~~~~~~~~~~~~~~~~~  300 (446)
                      |++|++.+...     +..+.++++|+.+++..+...........-+..++.+. .|++....+.         .++...
T Consensus       126 L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~---------~~~~~~  196 (276)
T 2z62_A          126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN---------FIQPGA  196 (276)
T ss_dssp             CCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCC---------EECTTS
T ss_pred             CCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCccc---------ccCccc
Confidence            99998887632     34577889999999987643322221112233444444 7777763221         122222


Q ss_pred             CCCCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEEe
Q 013265          301 PEMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLV  341 (446)
Q Consensus       301 ~~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~  341 (446)
                      ....+|++|++..+.-..-   ...++..+++|+.|++...
T Consensus       197 ~~~~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~l~~N  234 (276)
T 2z62_A          197 FKEIRLKELALDTNQLKSV---PDGIFDRLTSLQKIWLHTN  234 (276)
T ss_dssp             SCSCCEEEEECCSSCCSCC---CTTTTTTCCSCCEEECCSS
T ss_pred             cCCCcccEEECCCCceeec---CHhHhcccccccEEEccCC
Confidence            3344899999988751111   1234678999999999644

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=97.83  E-value=1.6e-05  Score=74.98  Aligned_cols=217  Identities=13%  Similarity=0.058  Sum_probs=142.7

Q ss_pred             ccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeEeCCcCccceEEeeccCCCCeEEEECCceeEEEE
Q 013265          153 SFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQLHAPNLLSFEY  232 (446)
Q Consensus       153 ~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~l~~~~i~~p~L~~l~~  232 (446)
                      .+++|++|+|++..+++.. ...+.. +++|+.|++.++.......+ ..+++|++|.++++. +..+. ..++|++|.+
T Consensus        32 ~~~~L~~L~L~~n~l~~~~-~~~~~~-l~~L~~L~Ls~n~l~~~~~~-~~l~~L~~L~Ls~n~-l~~l~-~~~~L~~L~l  106 (317)
T 3o53_A           32 SAWNVKELDLSGNPLSQIS-AADLAP-FTKLELLNLSSNVLYETLDL-ESLSTLRTLDLNNNY-VQELL-VGPSIETLHA  106 (317)
T ss_dssp             TGGGCSEEECTTSCCCCCC-HHHHTT-CTTCCEEECTTSCCEEEEEE-TTCTTCCEEECCSSE-EEEEE-ECTTCCEEEC
T ss_pred             cCCCCCEEECcCCccCcCC-HHHhhC-CCcCCEEECCCCcCCcchhh-hhcCCCCEEECcCCc-ccccc-CCCCcCEEEC
Confidence            5789999999998877532 234678 99999999999876544443 345899999999986 66555 4599999999


Q ss_pred             ccccc-ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEE
Q 013265          233 SGPIL-PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEI  311 (446)
Q Consensus       233 ~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L  311 (446)
                      .++.. ......+++|+.+++..+.......   ..+..+++|+.|+++++.+..       .........+++|++|.+
T Consensus       107 ~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~---~~~~~l~~L~~L~Ls~N~l~~-------~~~~~~~~~l~~L~~L~L  176 (317)
T 3o53_A          107 ANNNISRVSCSRGQGKKNIYLANNKITMLRD---LDEGCRSRVQYLDLKLNEIDT-------VNFAELAASSDTLEHLNL  176 (317)
T ss_dssp             CSSCCSEEEECCCSSCEEEECCSSCCCSGGG---BCTGGGSSEEEEECTTSCCCE-------EEGGGGGGGTTTCCEEEC
T ss_pred             CCCccCCcCccccCCCCEEECCCCCCCCccc---hhhhccCCCCEEECCCCCCCc-------ccHHHHhhccCcCCEEEC
Confidence            88754 2344567889999998764433222   345678999999999853321       111112235789999999


Q ss_pred             EecCCCCCHHHHHHHHhhCCCceEEEEEEecccccccccccccccCCCCccccccCCCcEEEEEeeecCcchHHHHHHHH
Q 013265          312 IGTPKVNDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTIKDQPYLSFTELRSIRVVELLGFVGHTADFELVMYLI  391 (446)
Q Consensus       312 ~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~p~c~~~~~~~l~~L~~v~i~~~~g~~~e~~~~~~ll  391 (446)
                      ..+.-. ....    ...+++|+.|++...   .      +..+|..    +..+.+|+++.+.+-.-..-.     .-+
T Consensus       177 ~~N~l~-~~~~----~~~l~~L~~L~Ls~N---~------l~~l~~~----~~~l~~L~~L~L~~N~l~~l~-----~~~  233 (317)
T 3o53_A          177 QYNFIY-DVKG----QVVFAKLKTLDLSSN---K------LAFMGPE----FQSAAGVTWISLRNNKLVLIE-----KAL  233 (317)
T ss_dssp             TTSCCC-EEEC----CCCCTTCCEEECCSS---C------CCEECGG----GGGGTTCSEEECTTSCCCEEC-----TTC
T ss_pred             CCCcCc-cccc----ccccccCCEEECCCC---c------CCcchhh----hcccCcccEEECcCCcccchh-----hHh
Confidence            887511 1111    124899999999533   1      1122221    113478999999764322100     013


Q ss_pred             hcCccccceEEecCCC
Q 013265          392 FSAKLLEKIIIDPCPT  407 (446)
Q Consensus       392 ~~a~~Le~l~i~~~~~  407 (446)
                      .+.+.|+.+.+....-
T Consensus       234 ~~l~~L~~L~l~~N~~  249 (317)
T 3o53_A          234 RFSQNLEHFDLRGNGF  249 (317)
T ss_dssp             CCCTTCCEEECTTCCC
T ss_pred             hcCCCCCEEEccCCCc
Confidence            6678999999886653

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=97.80  E-value=3.2e-05  Score=67.38  Aligned_cols=84  Identities=14%  Similarity=0.149  Sum_probs=49.5

Q ss_pred             cCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEEecCCCCCH
Q 013265          241 FRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTPKVNDL  320 (446)
Q Consensus       241 ~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~  320 (446)
                      +.++++|+.+++..+.......   ..+..+++|+.|.+..+.+..        ..+..+..+++|++|++..+....++
T Consensus        84 l~~l~~L~~L~l~~n~l~~~~~---~~l~~l~~L~~L~Ls~n~i~~--------~~~~~l~~l~~L~~L~L~~n~~i~~~  152 (197)
T 4ezg_A           84 ISGLSNLERLRIMGKDVTSDKI---PNLSGLTSLTLLDISHSAHDD--------SILTKINTLPKVNSIDLSYNGAITDI  152 (197)
T ss_dssp             GTTCTTCCEEEEECTTCBGGGS---CCCTTCTTCCEEECCSSBCBG--------GGHHHHTTCSSCCEEECCSCTBCCCC
T ss_pred             hhcCCCCCEEEeECCccCcccC---hhhcCCCCCCEEEecCCccCc--------HhHHHHhhCCCCCEEEccCCCCcccc
Confidence            4566777777776653322112   345667888888887743311        11233456778888888776412222


Q ss_pred             HHHHHHHhhCCCceEEEEE
Q 013265          321 IFCIALLEAAPSLYKFSLK  339 (446)
Q Consensus       321 ~~l~~ll~~~p~L~~L~l~  339 (446)
                      .    .+..+|+|+.|++.
T Consensus       153 ~----~l~~l~~L~~L~l~  167 (197)
T 4ezg_A          153 M----PLKTLPELKSLNIQ  167 (197)
T ss_dssp             G----GGGGCSSCCEEECT
T ss_pred             H----hhcCCCCCCEEECC
Confidence            1    36778888888873

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=97.78  E-value=2.2e-06  Score=71.17  Aligned_cols=61  Identities=21%  Similarity=0.100  Sum_probs=34.0

Q ss_pred             ccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeEeCCcCccceEEeeccC
Q 013265          153 SFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLD  215 (446)
Q Consensus       153 ~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~  215 (446)
                      ..++|+.|++.++.+++..+...+.. +++|+.|++.+|..... .....+++|+.|.++++.
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~-l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~   75 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDE-FEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNR   75 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTT-CTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSC
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhh-cCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCc
Confidence            34677777777776663333344566 77777777776643222 111223455666655554

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.78  E-value=2e-05  Score=75.63  Aligned_cols=122  Identities=16%  Similarity=0.062  Sum_probs=60.0

Q ss_pred             CCCcceEEecccchhhhhhhhhhhh-ccCCCceEEEEeecccccccchhcccccccCC--CCCCcccEEEEEecCCCCCH
Q 013265          244 VPNLVDASFWGCFSAYIAKNLCQHS-IFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDI--PEMCNLKHLEIIGTPKVNDL  320 (446)
Q Consensus       244 ~~~L~~l~l~~~~~~~~~~~l~~~l-~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~--~~~~~L~~L~L~~~~~~~~~  320 (446)
                      .++|+.+++..+....  ..+..+. ..+|+|+.|.|.......+. ......+...+  ..|++|++|.|..+.-..+ 
T Consensus       192 ~~~L~~L~L~~~~l~~--~~l~~l~~~~lp~L~~L~L~~~~~~~~~-~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~-  267 (362)
T 2ra8_A          192 RPNLKSLEIISGGLPD--SVVEDILGSDLPNLEKLVLYVGVEDYGF-DGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNV-  267 (362)
T ss_dssp             CTTCSEEEEECSBCCH--HHHHHHHHSBCTTCCEEEEECBCGGGTC-CSCGGGTGGGSCTTTCTTCCEEEEESCTTHHH-
T ss_pred             CCCCcEEEEecCCCCh--HHHHHHHHccCCCCcEEEEecccccccc-chhHHHHHHHHhcCCCCCcCEEeCCCCCCchH-
Confidence            5667777775443221  1111232 36889999988631100000 00000111112  3588999999987742211 


Q ss_pred             HHHHHHHh--hCCCceEEEEEEecccccccccccccccCCCCccccccCCCcEEEEEeee
Q 013265          321 IFCIALLE--AAPSLYKFSLKLVSQYDYESYESVKTIKDQPYLSFTELRSIRVVELLGFV  378 (446)
Q Consensus       321 ~~l~~ll~--~~p~L~~L~l~~~~~~~~~~~~~~~~~p~c~~~~~~~l~~L~~v~i~~~~  378 (446)
                       ....+.+  .+|+|++|+|+..   ...+.+ ...++....    ++.+|+.|.+.+..
T Consensus       268 -~~~~la~a~~~~~L~~LdLs~n---~L~d~G-~~~L~~~L~----~l~~L~~L~L~~n~  318 (362)
T 2ra8_A          268 -VVEMFLESDILPQLETMDISAG---VLTDEG-ARLLLDHVD----KIKHLKFINMKYNY  318 (362)
T ss_dssp             -HHHHHHHCSSGGGCSEEECCSS---CCBHHH-HHHHHTTHH----HHTTCSEEECCSBB
T ss_pred             -HHHHHHhCccCCCCCEEECCCC---CCChHH-HHHHHhhcc----cCCcceEEECCCCc
Confidence             1222332  4788999999432   222222 111222211    23789999997654

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=97.76  E-value=7.3e-06  Score=74.55  Aligned_cols=35  Identities=23%  Similarity=0.359  Sum_probs=32.7

Q ss_pred             cCCCCChHHHHHHHhCCChhHHHHHhhccchhhhh
Q 013265            7 HINELPDDILVNILSRLTMKEAVRTSIISSRWRYL   41 (446)
Q Consensus         7 ~is~LPd~iL~~ILs~Lp~kd~~rts~lSkrWr~l   41 (446)
                      -|+.||+||+.+||+||+.+|+++++.|||+||.+
T Consensus         4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~l   38 (312)
T 3l2o_B            4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNET   38 (312)
T ss_dssp             HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHH
T ss_pred             hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            36789999999999999999999999999999964

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.71  E-value=3e-06  Score=72.04  Aligned_cols=73  Identities=11%  Similarity=0.105  Sum_probs=54.2

Q ss_pred             cccccccCCccccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCcee---EeC---CcCccceEEeeccC
Q 013265          142 YTFPSHLDFYSSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLK---VSG---PSLKLKHLKLNKLD  215 (446)
Q Consensus       142 ~~lp~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~---i~~---~~~~L~~L~i~~~~  215 (446)
                      ..+|...   ..-..|+.|+|+++.++++++..+ ++ |++|++|+|.+|..+++-.   +..   .+++|++|++++|.
T Consensus        51 ~~LP~~~---~~~~~L~~LDLs~~~Itd~GL~~L-~~-~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~  125 (176)
T 3e4g_A           51 NHLPTGP---LDKYKIQAIDATDSCIMSIGFDHM-EG-LQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCG  125 (176)
T ss_dssp             GGSCCCS---TTCCCEEEEEEESCCCCGGGGGGG-TT-CSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCT
T ss_pred             ccCCccc---CCCceEeEEeCcCCCccHHHHHHh-cC-CCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCC
Confidence            4566432   123479999999999999998875 78 9999999999999876542   332   13579999999988


Q ss_pred             CCCe
Q 013265          216 NLKD  219 (446)
Q Consensus       216 ~l~~  219 (446)
                      .+.+
T Consensus       126 ~ITD  129 (176)
T 3e4g_A          126 NVTD  129 (176)
T ss_dssp             TCCH
T ss_pred             cCCH
Confidence            6543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=97.68  E-value=3.1e-05  Score=66.18  Aligned_cols=88  Identities=16%  Similarity=0.133  Sum_probs=47.9

Q ss_pred             CCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccc--cCCCCCCcccEEEEEecCCCCC
Q 013265          242 RNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYL--HDIPEMCNLKHLEIIGTPKVND  319 (446)
Q Consensus       242 ~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~--~~~~~~~~L~~L~L~~~~~~~~  319 (446)
                      .++++|+.++++.+.+.....   .++..+++|+.|.++++.+.         .++  ..+..+++|++|.+..+.-...
T Consensus        61 ~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~L~~N~i~---------~~~~~~~l~~l~~L~~L~l~~N~i~~~  128 (176)
T 1a9n_A           61 PLLRRLKTLLVNNNRICRIGE---GLDQALPDLTELILTNNSLV---------ELGDLDPLASLKSLTYLCILRNPVTNK  128 (176)
T ss_dssp             CCCSSCCEEECCSSCCCEECS---CHHHHCTTCCEEECCSCCCC---------CGGGGGGGGGCTTCCEEECCSSGGGGS
T ss_pred             ccCCCCCEEECCCCcccccCc---chhhcCCCCCEEECCCCcCC---------cchhhHhhhcCCCCCEEEecCCCCCCc
Confidence            345555555555443221111   33456777777777764321         111  1344667788888877641111


Q ss_pred             HHHHHHHHhhCCCceEEEEEEe
Q 013265          320 LIFCIALLEAAPSLYKFSLKLV  341 (446)
Q Consensus       320 ~~~l~~ll~~~p~L~~L~l~~~  341 (446)
                      ...-..++..+|+|+.|++...
T Consensus       129 ~~~~~~~~~~l~~L~~Ld~~~n  150 (176)
T 1a9n_A          129 KHYRLYVIYKVPQVRVLDFQKV  150 (176)
T ss_dssp             TTHHHHHHHHCTTCSEETTEEC
T ss_pred             HhHHHHHHHHCCccceeCCCcC
Confidence            1122345788899999888654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=97.68  E-value=1.4e-05  Score=66.22  Aligned_cols=130  Identities=15%  Similarity=0.061  Sum_probs=74.2

Q ss_pred             CCCcceeeEeccCCC-Cce-eEeCCcCccceEEeeccCCCCeEEEECCceeEEEEcccccccccCCCCCcceEEecccch
Q 013265          180 CPVLEVLNVAESSSL-TSL-KVSGPSLKLKHLKLNKLDNLKDLQLHAPNLLSFEYSGPILPFSFRNVPNLVDASFWGCFS  257 (446)
Q Consensus       180 cp~Le~L~L~~c~~~-~~~-~i~~~~~~L~~L~i~~~~~l~~~~i~~p~L~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~  257 (446)
                      .+.|++|++.+|... +.+ .....+++|+.|.+.++. +..+                  ..+.++++|+.++++.+..
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~------------------~~~~~l~~L~~L~Ls~n~i   76 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSI------------------ANLPKLNKLKKLELSDNRV   76 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-CCCC------------------TTCCCCTTCCEEECCSSCC
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-CCCc------------------hhhhcCCCCCEEECCCCcc
Confidence            567888888887643 122 222334566666666654 2222                  1345667777777766533


Q ss_pred             hhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEE
Q 013265          258 AYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFS  337 (446)
Q Consensus       258 ~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~  337 (446)
                      ...   +...+..+++++.|.++++.+..       ...+..+..+++|++|++..+.-..........+..+|+|+.|+
T Consensus        77 ~~~---~~~~~~~l~~L~~L~ls~N~i~~-------~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~  146 (149)
T 2je0_A           77 SGG---LEVLAEKCPNLTHLNLSGNKIKD-------LSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLD  146 (149)
T ss_dssp             CSC---THHHHHHCTTCCEEECTTSCCCS-------HHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEET
T ss_pred             cch---HHHHhhhCCCCCEEECCCCcCCC-------hHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCccccc
Confidence            221   22555668888888888743311       11123455678888888877741111111234677888888876


Q ss_pred             E
Q 013265          338 L  338 (446)
Q Consensus       338 l  338 (446)
                      +
T Consensus       147 l  147 (149)
T 2je0_A          147 G  147 (149)
T ss_dssp             T
T ss_pred             C
Confidence            5

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.65  E-value=4.1e-06  Score=80.96  Aligned_cols=170  Identities=15%  Similarity=0.010  Sum_probs=90.0

Q ss_pred             cccccceEEEEEEeChHH---HHHHHhcCCCCcceeeEeccCCCCc-e-eEeCCcCccceEEeeccCCCCeEEEECCcee
Q 013265          154 FRHLTDLSLTTVGITGEV---LEHLLCYCCPVLEVLNVAESSSLTS-L-KVSGPSLKLKHLKLNKLDNLKDLQLHAPNLL  228 (446)
Q Consensus       154 ~~~L~~L~L~~~~~~~~~---l~~ll~~~cp~Le~L~L~~c~~~~~-~-~i~~~~~~L~~L~i~~~~~l~~~~i~~p~L~  228 (446)
                      .++|+.|+|+++.+++.+   +..++...++.|++|+|.+|..... + .+...+++|++|.+++|. +......     
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~~~-----  144 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS-LGPEACK-----  144 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC-CCHHHHH-----
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC-CCHHHHH-----
Confidence            456777777777766543   3333333135777777776642110 1 111112345555554443 1110000     


Q ss_pred             EEEEccccccccc-CCCCCcceEEecccchhh-hhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcc
Q 013265          229 SFEYSGPILPFSF-RNVPNLVDASFWGCFSAY-IAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNL  306 (446)
Q Consensus       229 ~l~~~~~~~~~~~-~~~~~L~~l~l~~~~~~~-~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L  306 (446)
                             ...-.+ ...+.|+++++..+.+.. ....+...+...++|++|+|+++.+..    .....+...+...++|
T Consensus       145 -------~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~----~g~~~L~~~L~~~~~L  213 (372)
T 3un9_A          145 -------DLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGD----EGLELLAAQLDRNRQL  213 (372)
T ss_dssp             -------HHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHH----HHHHHHHHHGGGCSCC
T ss_pred             -------HHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCc----HHHHHHHHHHhcCCCc
Confidence                   000001 234566666666554332 223344566778889999988854321    1111223334556789


Q ss_pred             cEEEEEecC-CCCCHHHHHHHHhhCCCceEEEEEE
Q 013265          307 KHLEIIGTP-KVNDLIFCIALLEAAPSLYKFSLKL  340 (446)
Q Consensus       307 ~~L~L~~~~-~~~~~~~l~~ll~~~p~L~~L~l~~  340 (446)
                      ++|+|..+. .......+...++.+|+|+.|+|..
T Consensus       214 ~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~  248 (372)
T 3un9_A          214 QELNVAYNGAGDTAALALARAAREHPSLELLHLYF  248 (372)
T ss_dssp             CEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTT
T ss_pred             CeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccC
Confidence            999998885 2233446777788899999999943

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=97.57  E-value=5.7e-06  Score=75.88  Aligned_cols=139  Identities=17%  Similarity=0.070  Sum_probs=77.1

Q ss_pred             CCCcceeeEeccCCCCceeEeCCcCccceEEeeccCCCCeEE--EECCceeEEEEccccccc--ccCCCCCcceEEeccc
Q 013265          180 CPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQ--LHAPNLLSFEYSGPILPF--SFRNVPNLVDASFWGC  255 (446)
Q Consensus       180 cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~l~~~~--i~~p~L~~l~~~~~~~~~--~~~~~~~L~~l~l~~~  255 (446)
                      ++.|+.|++.+|.. ..+.-...+++|+.|.++++. +..+.  -..++|+.|++.++...-  .+.. ++|+.++++.+
T Consensus        40 l~~L~~L~l~~n~i-~~l~~l~~l~~L~~L~L~~N~-i~~~~~l~~l~~L~~L~L~~N~l~~l~~~~~-~~L~~L~L~~N  116 (263)
T 1xeu_A           40 LSGVQNFNGDNSNI-QSLAGMQFFTNLKELHLSHNQ-ISDLSPLKDLTKLEELSVNRNRLKNLNGIPS-ACLSRLFLDNN  116 (263)
T ss_dssp             HTTCSEEECTTSCC-CCCTTGGGCTTCCEEECCSSC-CCCCGGGTTCSSCCEEECCSSCCSCCTTCCC-SSCCEEECCSS
T ss_pred             cCcCcEEECcCCCc-ccchHHhhCCCCCEEECCCCc-cCCChhhccCCCCCEEECCCCccCCcCcccc-CcccEEEccCC
Confidence            55555555555422 111111122455555555443 22211  123556666665553210  1222 78999999776


Q ss_pred             chhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEEecCCCCCHHHHHHHHhhCCCceE
Q 013265          256 FSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYK  335 (446)
Q Consensus       256 ~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~  335 (446)
                      .....     ..+..+++|+.|+++.+.+.         .+ ..+..+++|++|++..+.-...     ..+..+++|+.
T Consensus       117 ~l~~~-----~~l~~l~~L~~L~Ls~N~i~---------~~-~~l~~l~~L~~L~L~~N~i~~~-----~~l~~l~~L~~  176 (263)
T 1xeu_A          117 ELRDT-----DSLIHLKNLEILSIRNNKLK---------SI-VMLGFLSKLEVLDLHGNEITNT-----GGLTRLKKVNW  176 (263)
T ss_dssp             CCSBS-----GGGTTCTTCCEEECTTSCCC---------BC-GGGGGCTTCCEEECTTSCCCBC-----TTSTTCCCCCE
T ss_pred             ccCCC-----hhhcCcccccEEECCCCcCC---------CC-hHHccCCCCCEEECCCCcCcch-----HHhccCCCCCE
Confidence            43321     23677899999999874331         11 1355678999999988752111     34678899999


Q ss_pred             EEEEEe
Q 013265          336 FSLKLV  341 (446)
Q Consensus       336 L~l~~~  341 (446)
                      |++...
T Consensus       177 L~l~~N  182 (263)
T 1xeu_A          177 IDLTGQ  182 (263)
T ss_dssp             EEEEEE
T ss_pred             EeCCCC
Confidence            999765

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=97.50  E-value=0.00019  Score=63.70  Aligned_cols=147  Identities=13%  Similarity=0.045  Sum_probs=77.8

Q ss_pred             ccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCce-eEeCCcCccceEEeeccCCCCeEEEECCceeEEEEc
Q 013265          155 RHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSL-KVSGPSLKLKHLKLNKLDNLKDLQLHAPNLLSFEYS  233 (446)
Q Consensus       155 ~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~-~i~~~~~~L~~L~i~~~~~l~~~~i~~p~L~~l~~~  233 (446)
                      ++|+.|+|.+..++.-. ...+.. +++|+.|+|.++...... ..-..+++|++|.++++. +..+             
T Consensus        32 ~~l~~L~l~~n~i~~i~-~~~~~~-l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l-------------   95 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIP-PGAFSP-YKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK-ITEL-------------   95 (220)
T ss_dssp             TTCCEEECCSSCCCEEC-TTSSTT-CTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC-CCCC-------------
T ss_pred             cCCCEEECCCCcCCCcC-HhHhhC-CCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc-CCcc-------------
Confidence            57778887776654311 112456 777888877776432110 001122344444444433 1111             


Q ss_pred             ccccccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEEe
Q 013265          234 GPILPFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIG  313 (446)
Q Consensus       234 ~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~  313 (446)
                         .+..+.++++|+.+++..+.+.....   ..+..+++|+.|+|.++.+..        ..+..+..+++|++|.|..
T Consensus        96 ---~~~~f~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~L~~N~l~~--------~~~~~~~~l~~L~~L~L~~  161 (220)
T 2v9t_B           96 ---PKSLFEGLFSLQLLLLNANKINCLRV---DAFQDLHNLNLLSLYDNKLQT--------IAKGTFSPLRAIQTMHLAQ  161 (220)
T ss_dssp             ---CTTTTTTCTTCCEEECCSSCCCCCCT---TTTTTCTTCCEEECCSSCCSC--------CCTTTTTTCTTCCEEECCS
T ss_pred             ---CHhHccCCCCCCEEECCCCCCCEeCH---HHcCCCCCCCEEECCCCcCCE--------ECHHHHhCCCCCCEEEeCC
Confidence               11234567777777776654332222   445677788888887743211        1122355677888888877


Q ss_pred             cC--CCCCHHHHHHHHhhCC
Q 013265          314 TP--KVNDLIFCIALLEAAP  331 (446)
Q Consensus       314 ~~--~~~~~~~l~~ll~~~p  331 (446)
                      +.  -.....++...++.-+
T Consensus       162 N~~~c~c~l~~l~~~l~~~~  181 (220)
T 2v9t_B          162 NPFICDCHLKWLADYLHTNP  181 (220)
T ss_dssp             SCEECSGGGHHHHHHHHHCC
T ss_pred             CCcCCCCccHHHHHHHHhCC
Confidence            74  3344556666665543

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.47  E-value=3.1e-05  Score=76.54  Aligned_cols=39  Identities=23%  Similarity=0.457  Sum_probs=36.0

Q ss_pred             cCCcCCCCChHHHHHHHhCCChhHHHHHhhccchhhhhc
Q 013265            4 EGDHINELPDDILVNILSRLTMKEAVRTSIISSRWRYLW   42 (446)
Q Consensus         4 ~~D~is~LPd~iL~~ILs~Lp~kd~~rts~lSkrWr~lw   42 (446)
                      ..|.|+.||+|++.+||++|+.+|.++++.|||+|+++.
T Consensus        11 ~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~   49 (464)
T 3v7d_B           11 KRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKII   49 (464)
T ss_dssp             CCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHH
T ss_pred             ccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence            368899999999999999999999999999999998653

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=97.45  E-value=3.7e-05  Score=65.63  Aligned_cols=134  Identities=13%  Similarity=0.032  Sum_probs=61.0

Q ss_pred             ccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeEeCCcCccceEEeeccCCCCeEEEECCceeEEEE
Q 013265          153 SFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQLHAPNLLSFEY  232 (446)
Q Consensus       153 ~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~l~~~~i~~p~L~~l~~  232 (446)
                      .+++|+.|.|.++.++.  +..+... +|+|+.|++.++.... +..-..+++|+.|.++++. +..+.-          
T Consensus        17 ~~~~L~~L~l~~n~l~~--i~~~~~~-~~~L~~L~Ls~N~l~~-~~~l~~l~~L~~L~Ls~N~-l~~~~~----------   81 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIPV--IENLGAT-LDQFDAIDFSDNEIRK-LDGFPLLRRLKTLLVNNNR-ICRIGE----------   81 (176)
T ss_dssp             CTTSCEEEECTTSCCCS--CCCGGGG-TTCCSEEECCSSCCCE-ECCCCCCSSCCEEECCSSC-CCEECS----------
T ss_pred             CcCCceEEEeeCCCCch--hHHhhhc-CCCCCEEECCCCCCCc-ccccccCCCCCEEECCCCc-ccccCc----------
Confidence            45566677766665552  2222333 4577777776664322 2111223455555555554 332210          


Q ss_pred             cccccccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEE
Q 013265          233 SGPILPFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEII  312 (446)
Q Consensus       233 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~  312 (446)
                            ..+.++++|+.++++.+.+... .. ...+..+++|+.|.+.++.+...    . ......+..+++|+.|++.
T Consensus        82 ------~~~~~l~~L~~L~L~~N~i~~~-~~-~~~l~~l~~L~~L~l~~N~i~~~----~-~~~~~~~~~l~~L~~Ld~~  148 (176)
T 1a9n_A           82 ------GLDQALPDLTELILTNNSLVEL-GD-LDPLASLKSLTYLCILRNPVTNK----K-HYRLYVIYKVPQVRVLDFQ  148 (176)
T ss_dssp             ------CHHHHCTTCCEEECCSCCCCCG-GG-GGGGGGCTTCCEEECCSSGGGGS----T-THHHHHHHHCTTCSEETTE
T ss_pred             ------chhhcCCCCCEEECCCCcCCcc-hh-hHhhhcCCCCCEEEecCCCCCCc----H-hHHHHHHHHCCccceeCCC
Confidence                  1123455555555554422110 10 02345666677776666433110    0 0000013345667777666


Q ss_pred             ec
Q 013265          313 GT  314 (446)
Q Consensus       313 ~~  314 (446)
                      .+
T Consensus       149 ~n  150 (176)
T 1a9n_A          149 KV  150 (176)
T ss_dssp             EC
T ss_pred             cC
Confidence            65

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=97.43  E-value=6.8e-05  Score=74.41  Aligned_cols=12  Identities=8%  Similarity=0.019  Sum_probs=7.4

Q ss_pred             CCCcEEEEEeee
Q 013265          367 RSIRVVELLGFV  378 (446)
Q Consensus       367 ~~L~~v~i~~~~  378 (446)
                      .+|+++.+.+-.
T Consensus       317 ~~L~~L~Ls~N~  328 (454)
T 1jl5_A          317 PSLEELNVSNNK  328 (454)
T ss_dssp             TTCCEEECCSSC
T ss_pred             CcCCEEECCCCc
Confidence            467777666543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=97.42  E-value=7.1e-05  Score=76.24  Aligned_cols=132  Identities=19%  Similarity=0.141  Sum_probs=75.6

Q ss_pred             cCCcEEEEeeeccccccccccccccccccCCccccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeE
Q 013265          120 RRVRRLELDFSRVVYNLRFVGQYTFPSHLDFYSSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKV  199 (446)
Q Consensus       120 ~~l~~L~l~~~~~~~~~~~~~~~~lp~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i  199 (446)
                      .+++.|.+....         .-.+|..+     +++|++|+|+++.++.  +.   .. +++|+.|++.++.......+
T Consensus        59 ~~L~~L~Ls~n~---------L~~lp~~l-----~~~L~~L~Ls~N~l~~--ip---~~-l~~L~~L~Ls~N~l~~ip~l  118 (571)
T 3cvr_A           59 NQFSELQLNRLN---------LSSLPDNL-----PPQITVLEITQNALIS--LP---EL-PASLEYLDACDNRLSTLPEL  118 (571)
T ss_dssp             TTCSEEECCSSC---------CSCCCSCC-----CTTCSEEECCSSCCSC--CC---CC-CTTCCEEECCSSCCSCCCCC
T ss_pred             CCccEEEeCCCC---------CCccCHhH-----cCCCCEEECcCCCCcc--cc---cc-cCCCCEEEccCCCCCCcchh
Confidence            477777764332         11355433     3678888888777663  22   45 78888888887754331121


Q ss_pred             eCCcCccceEEeeccCCCCeEEEECCceeEEEEcccccccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEE
Q 013265          200 SGPSLKLKHLKLNKLDNLKDLQLHAPNLLSFEYSGPILPFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKL  279 (446)
Q Consensus       200 ~~~~~~L~~L~i~~~~~l~~~~i~~p~L~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L  279 (446)
                       .  .+|++|.++++. +..+.-..++|+.|++.++........+++|+.++++.+.+.. .+   . +.  ++|+.|+|
T Consensus       119 -~--~~L~~L~Ls~N~-l~~lp~~l~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~L~~-lp---~-l~--~~L~~L~L  187 (571)
T 3cvr_A          119 -P--ASLKHLDVDNNQ-LTMLPELPALLEYINADNNQLTMLPELPTSLEVLSVRNNQLTF-LP---E-LP--ESLEALDV  187 (571)
T ss_dssp             -C--TTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CC---C-CC--TTCCEEEC
T ss_pred             -h--cCCCEEECCCCc-CCCCCCcCccccEEeCCCCccCcCCCcCCCcCEEECCCCCCCC-cc---h-hh--CCCCEEEC
Confidence             1  378888887765 3333225577777777776433222245677777776653322 11   2 11  67777777


Q ss_pred             eec
Q 013265          280 DTC  282 (446)
Q Consensus       280 ~~~  282 (446)
                      +++
T Consensus       188 s~N  190 (571)
T 3cvr_A          188 STN  190 (571)
T ss_dssp             CSS
T ss_pred             cCC
Confidence            764

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=97.42  E-value=3.1e-05  Score=68.87  Aligned_cols=145  Identities=13%  Similarity=0.091  Sum_probs=74.8

Q ss_pred             ccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCcee-EeCCcCccceEEeeccCCCCeEEEECCceeEEEEc
Q 013265          155 RHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLK-VSGPSLKLKHLKLNKLDNLKDLQLHAPNLLSFEYS  233 (446)
Q Consensus       155 ~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~-i~~~~~~L~~L~i~~~~~l~~~~i~~p~L~~l~~~  233 (446)
                      +.++.|.|.+..++.-.....+.. +++|+.|++.++....... ....+++|+.|.++++. +..+             
T Consensus        32 ~~~~~L~L~~N~l~~~~~~~~~~~-l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~-------------   96 (220)
T 2v70_A           32 QYTAELRLNNNEFTVLEATGIFKK-LPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR-LENV-------------   96 (220)
T ss_dssp             TTCSEEECCSSCCCEECCCCCGGG-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCCC-------------
T ss_pred             CCCCEEEcCCCcCCccCchhhhcc-CCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc-cCcc-------------
Confidence            456777777766543211123556 7777777777664221110 01122344444444433 1111             


Q ss_pred             ccccccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEEe
Q 013265          234 GPILPFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIG  313 (446)
Q Consensus       234 ~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~  313 (446)
                         .+..+.++++|+.+++..+.+.....   ..+..+++|+.|+|..+.+.        ...+..+..+++|++|.|..
T Consensus        97 ---~~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~L~~N~l~--------~~~~~~~~~l~~L~~L~L~~  162 (220)
T 2v70_A           97 ---QHKMFKGLESLKTLMLRSNRITCVGN---DSFIGLSSVRLLSLYDNQIT--------TVAPGAFDTLHSLSTLNLLA  162 (220)
T ss_dssp             ---CGGGGTTCSSCCEEECTTSCCCCBCT---TSSTTCTTCSEEECTTSCCC--------CBCTTTTTTCTTCCEEECCS
T ss_pred             ---CHhHhcCCcCCCEEECCCCcCCeECH---hHcCCCccCCEEECCCCcCC--------EECHHHhcCCCCCCEEEecC
Confidence               12235567777777776553332222   34556778888887763221        11134456677888888877


Q ss_pred             cC--CCCCHHHHHHHHh
Q 013265          314 TP--KVNDLIFCIALLE  328 (446)
Q Consensus       314 ~~--~~~~~~~l~~ll~  328 (446)
                      +.  ......++...++
T Consensus       163 N~l~c~c~l~~l~~~~~  179 (220)
T 2v70_A          163 NPFNCNCYLAWLGEWLR  179 (220)
T ss_dssp             CCEECSGGGHHHHHHHH
T ss_pred             cCCcCCCchHHHHHHHH
Confidence            74  2334445555554

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=97.41  E-value=7.6e-05  Score=76.03  Aligned_cols=181  Identities=14%  Similarity=0.103  Sum_probs=112.3

Q ss_pred             ccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeEeCCcCccceEEeeccCCCCeEEEECCceeEEEEcc
Q 013265          155 RHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQLHAPNLLSFEYSG  234 (446)
Q Consensus       155 ~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~l~~~~i~~p~L~~l~~~~  234 (446)
                      .+|+.|+|.+..+++  +..  .- +++|+.|+|.++... .+.  ..+++|+.|.++++. +..+..-..+|++|++.+
T Consensus        59 ~~L~~L~Ls~n~L~~--lp~--~l-~~~L~~L~Ls~N~l~-~ip--~~l~~L~~L~Ls~N~-l~~ip~l~~~L~~L~Ls~  129 (571)
T 3cvr_A           59 NQFSELQLNRLNLSS--LPD--NL-PPQITVLEITQNALI-SLP--ELPASLEYLDACDNR-LSTLPELPASLKHLDVDN  129 (571)
T ss_dssp             TTCSEEECCSSCCSC--CCS--CC-CTTCSEEECCSSCCS-CCC--CCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCS
T ss_pred             CCccEEEeCCCCCCc--cCH--hH-cCCCCEEECcCCCCc-ccc--cccCCCCEEEccCCC-CCCcchhhcCCCEEECCC
Confidence            489999999887764  211  12 678999999988644 333  445899999999886 544432234999999988


Q ss_pred             cccccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEEec
Q 013265          235 PILPFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGT  314 (446)
Q Consensus       235 ~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~  314 (446)
                      +........+++|+.++++.+.+..       +...+++|+.|.++++.+.         .++. ++  ++|+.|+|..+
T Consensus       130 N~l~~lp~~l~~L~~L~Ls~N~l~~-------lp~~l~~L~~L~Ls~N~L~---------~lp~-l~--~~L~~L~Ls~N  190 (571)
T 3cvr_A          130 NQLTMLPELPALLEYINADNNQLTM-------LPELPTSLEVLSVRNNQLT---------FLPE-LP--ESLEALDVSTN  190 (571)
T ss_dssp             SCCSCCCCCCTTCCEEECCSSCCSC-------CCCCCTTCCEEECCSSCCS---------CCCC-CC--TTCCEEECCSS
T ss_pred             CcCCCCCCcCccccEEeCCCCccCc-------CCCcCCCcCEEECCCCCCC---------Ccch-hh--CCCCEEECcCC
Confidence            7543212267889999998764332       2226789999999985331         1233 33  89999999988


Q ss_pred             CC--CCCHHHHHHHHhhCCCceEEEEEEecccccccccccccccCCCCccccccCCCcEEEEEeee
Q 013265          315 PK--VNDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTIKDQPYLSFTELRSIRVVELLGFV  378 (446)
Q Consensus       315 ~~--~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~p~c~~~~~~~l~~L~~v~i~~~~  378 (446)
                      .-  ...+..  .+....+.|+.|++..+         .+..+|....    ++.+|+.+.+.+-.
T Consensus       191 ~L~~lp~~~~--~L~~~~~~L~~L~Ls~N---------~l~~lp~~l~----~l~~L~~L~L~~N~  241 (571)
T 3cvr_A          191 LLESLPAVPV--RNHHSEETEIFFRCREN---------RITHIPENIL----SLDPTCTIILEDNP  241 (571)
T ss_dssp             CCSSCCCCC----------CCEEEECCSS---------CCCCCCGGGG----GSCTTEEEECCSSS
T ss_pred             CCCchhhHHH--hhhcccccceEEecCCC---------cceecCHHHh----cCCCCCEEEeeCCc
Confidence            51  111111  23333444588888432         2223343221    35889999988754

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=97.39  E-value=0.00017  Score=71.58  Aligned_cols=50  Identities=24%  Similarity=0.163  Sum_probs=24.8

Q ss_pred             CccceEEeeccCCCCeEEEECCceeEEEEccccc---ccccCCCCCcceEEeccc
Q 013265          204 LKLKHLKLNKLDNLKDLQLHAPNLLSFEYSGPIL---PFSFRNVPNLVDASFWGC  255 (446)
Q Consensus       204 ~~L~~L~i~~~~~l~~~~i~~p~L~~l~~~~~~~---~~~~~~~~~L~~l~l~~~  255 (446)
                      ++|+.|.+.++. +..+.-..++|++|++.++..   + .+.++++|+.++++.+
T Consensus       195 ~~L~~L~l~~N~-l~~l~~~~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N  247 (454)
T 1jl5_A          195 PFLTAIYADNNS-LKKLPDLPLSLESIVAGNNILEELP-ELQNLPFLTTIYADNN  247 (454)
T ss_dssp             TTCCEEECCSSC-CSSCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSS
T ss_pred             CCCCEEECCCCc-CCcCCCCcCcccEEECcCCcCCccc-ccCCCCCCCEEECCCC
Confidence            455555555544 333222234566666655422   2 2445666666666554

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=97.39  E-value=0.00015  Score=64.70  Aligned_cols=146  Identities=18%  Similarity=0.123  Sum_probs=87.7

Q ss_pred             CceeEEEEccccc----ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCC
Q 013265          225 PNLLSFEYSGPIL----PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDI  300 (446)
Q Consensus       225 p~L~~l~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~  300 (446)
                      ++|++|++.+..+    +-.+.++++|+.+++..+.+.....   ..+..+++|+.|+|+.+.+.        ......+
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~---~~~~~l~~L~~L~Ls~N~l~--------~l~~~~~  108 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPV---GVFDSLTQLTVLDLGTNQLT--------VLPSAVF  108 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT---TTTTTCTTCCEEECCSSCCC--------CCCTTTT
T ss_pred             CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcCh---hhcccCCCcCEEECCCCcCC--------ccChhHh
Confidence            5566666665532    2346678888888887664432222   45677889999999884331        1112335


Q ss_pred             CCCCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEEecccccccccccccccCCCCccccccCCCcEEEEEe--ee
Q 013265          301 PEMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTIKDQPYLSFTELRSIRVVELLG--FV  378 (446)
Q Consensus       301 ~~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~p~c~~~~~~~l~~L~~v~i~~--~~  378 (446)
                      ..+++|++|.|..+.-. .   +..-+..+++|+.|+++..         .+..++.-   .+..+.+|+.+.+.+  +.
T Consensus       109 ~~l~~L~~L~Ls~N~l~-~---lp~~~~~l~~L~~L~L~~N---------~l~~~~~~---~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          109 DRLVHLKELFMCCNKLT-E---LPRGIERLTHLTHLALDQN---------QLKSIPHG---AFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             TTCTTCCEEECCSSCCC-S---CCTTGGGCTTCSEEECCSS---------CCCCCCTT---TTTTCTTCCEEECTTSCBC
T ss_pred             CcchhhCeEeccCCccc-c---cCcccccCCCCCEEECCCC---------cCCccCHH---HHhCCCCCCEEEeeCCCcc
Confidence            67889999999887521 1   1223478899999998532         22222211   111347899999977  55


Q ss_pred             cCcchH-HHHHHHHhcCccc
Q 013265          379 GHTADF-ELVMYLIFSAKLL  397 (446)
Q Consensus       379 g~~~e~-~~~~~ll~~a~~L  397 (446)
                      +...++ .+..++..+...+
T Consensus       173 c~c~~~~~l~~~~~~~~~~~  192 (229)
T 3e6j_A          173 CECRDIMYLRNWVADHTSIA  192 (229)
T ss_dssp             TTBGGGHHHHHHHHHCGGGE
T ss_pred             CCcchhHHHHHHHHhCcccc
Confidence            555433 4555666666554

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=97.38  E-value=0.00015  Score=74.64  Aligned_cols=143  Identities=16%  Similarity=0.113  Sum_probs=81.0

Q ss_pred             CceeEEEEccccc----ccccCCCCCcceEEecccch-hhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccC
Q 013265          225 PNLLSFEYSGPIL----PFSFRNVPNLVDASFWGCFS-AYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHD  299 (446)
Q Consensus       225 p~L~~l~~~~~~~----~~~~~~~~~L~~l~l~~~~~-~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~  299 (446)
                      ++++.+++.+...    +..+..+++++.+++..+.. .....   ..+..+++|+.|+|+++.+.        ...+..
T Consensus       445 ~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~---~~~~~l~~L~~L~Ls~N~L~--------~l~~~~  513 (635)
T 4g8a_A          445 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP---DIFTELRNLTFLDLSQCQLE--------QLSPTA  513 (635)
T ss_dssp             TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEEC---SCCTTCTTCCEEECTTSCCC--------EECTTT
T ss_pred             cccccccccccccccccccccccchhhhhhhhhhcccccccCc---hhhhhccccCEEECCCCccC--------CcChHH
Confidence            4555555544321    23344566777777765421 11111   45567788888888774321        122445


Q ss_pred             CCCCCcccEEEEEecC-CCCCHHHHHHHHhhCCCceEEEEEEecccccccccccccc-cCCCCcccccc-CCCcEEEEEe
Q 013265          300 IPEMCNLKHLEIIGTP-KVNDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTI-KDQPYLSFTEL-RSIRVVELLG  376 (446)
Q Consensus       300 ~~~~~~L~~L~L~~~~-~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~-p~c~~~~~~~l-~~L~~v~i~~  376 (446)
                      +..+++|++|.|+.+. ..-.    ...+..+++|+.|+++..         .+... |+.+.    .+ ++|+++.+.+
T Consensus       514 f~~l~~L~~L~Ls~N~l~~l~----~~~~~~l~~L~~L~Ls~N---------~l~~~~~~~l~----~l~~~L~~L~L~~  576 (635)
T 4g8a_A          514 FNSLSSLQVLNMSHNNFFSLD----TFPYKCLNSLQVLDYSLN---------HIMTSKKQELQ----HFPSSLAFLNLTQ  576 (635)
T ss_dssp             TTTCTTCCEEECTTSCCCBCC----CGGGTTCTTCCEEECTTS---------CCCBCCSSCTT----CCCTTCCEEECTT
T ss_pred             HcCCCCCCEEECCCCcCCCCC----hhHHhCCCCCCEEECCCC---------cCCCCCHHHHH----hhhCcCCEEEeeC
Confidence            6677888888887763 1111    113567888888888422         11111 22111    12 6799999987


Q ss_pred             --eecCcchHHHHHHHHhcCc
Q 013265          377 --FVGHTADFELVMYLIFSAK  395 (446)
Q Consensus       377 --~~g~~~e~~~~~~ll~~a~  395 (446)
                        |..+++-..|+.++-++..
T Consensus       577 Np~~C~C~~~~~~~wl~~~~~  597 (635)
T 4g8a_A          577 NDFACTCEHQSFLQWIKDQRQ  597 (635)
T ss_dssp             CCBCCSGGGHHHHHHHHHTTT
T ss_pred             CCCcccCCcHHHHHHHHhCCC
Confidence              7777777788887755543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=97.37  E-value=3.2e-05  Score=67.93  Aligned_cols=147  Identities=16%  Similarity=0.053  Sum_probs=86.5

Q ss_pred             cccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCcee-EeCCcCccceEEeeccCCCCeEEEECCceeEEEE
Q 013265          154 FRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLK-VSGPSLKLKHLKLNKLDNLKDLQLHAPNLLSFEY  232 (446)
Q Consensus       154 ~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~-i~~~~~~L~~L~i~~~~~l~~~~i~~p~L~~l~~  232 (446)
                      .++|++|+|.+..+++- ....+.. +++|++|++.++....... ....+++|++|.+.++. +..+            
T Consensus        27 ~~~l~~L~l~~n~l~~~-~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~------------   91 (208)
T 2o6s_A           27 PAQTTYLDLETNSLKSL-PNGVFDE-LTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ-LQSL------------   91 (208)
T ss_dssp             CTTCSEEECCSSCCCCC-CTTTTTT-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCC------------
T ss_pred             CCCCcEEEcCCCccCcC-Chhhhcc-cccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc-CCcc------------
Confidence            46889999988776632 1223567 8999999998874332111 11223556666665553 2211            


Q ss_pred             cccccccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEE
Q 013265          233 SGPILPFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEII  312 (446)
Q Consensus       233 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~  312 (446)
                          .+..+.++++|+.+++..+.+.....   ..+..+++|+.|++..+.+.        ......+..+++|++|.+.
T Consensus        92 ----~~~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~l~~N~l~--------~~~~~~~~~l~~L~~L~l~  156 (208)
T 2o6s_A           92 ----PNGVFDKLTQLKELALNTNQLQSLPD---GVFDKLTQLKDLRLYQNQLK--------SVPDGVFDRLTSLQYIWLH  156 (208)
T ss_dssp             ----CTTTTTTCTTCCEEECCSSCCCCCCT---TTTTTCTTCCEEECCSSCCS--------CCCTTTTTTCTTCCEEECC
T ss_pred             ----CHhHhcCccCCCEEEcCCCcCcccCH---hHhccCCcCCEEECCCCccc--------eeCHHHhccCCCccEEEec
Confidence                11234567778888776653332222   34567888999998874321        1112235667899999998


Q ss_pred             ecCCCCCHHHHHHHHhhCCCceEEEEEE
Q 013265          313 GTPKVNDLIFCIALLEAAPSLYKFSLKL  340 (446)
Q Consensus       313 ~~~~~~~~~~l~~ll~~~p~L~~L~l~~  340 (446)
                      .+.-.          ..||+|+.|.+..
T Consensus       157 ~N~~~----------~~~~~l~~L~~~~  174 (208)
T 2o6s_A          157 DNPWD----------CTCPGIRYLSEWI  174 (208)
T ss_dssp             SCCBC----------CCTTTTHHHHHHH
T ss_pred             CCCee----------cCCCCHHHHHHHH
Confidence            87422          3467777776643

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=97.24  E-value=7.5e-05  Score=66.76  Aligned_cols=145  Identities=18%  Similarity=0.072  Sum_probs=85.6

Q ss_pred             cccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCce-eEeCCcCccceEEeeccCCCCeEEEECCceeEEEE
Q 013265          154 FRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSL-KVSGPSLKLKHLKLNKLDNLKDLQLHAPNLLSFEY  232 (446)
Q Consensus       154 ~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~-~i~~~~~~L~~L~i~~~~~l~~~~i~~p~L~~l~~  232 (446)
                      .++|++|.|++..++.-. ...+.. +++|+.|+|.++...... .....+++|+.|.++++. +..+            
T Consensus        39 ~~~L~~L~Ls~n~i~~~~-~~~~~~-l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~-l~~l------------  103 (229)
T 3e6j_A           39 PTNAQILYLHDNQITKLE-PGVFDS-LINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ-LTVL------------  103 (229)
T ss_dssp             CTTCSEEECCSSCCCCCC-TTTTTT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCC------------
T ss_pred             CCCCCEEEcCCCccCccC-HHHhhC-ccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc-CCcc------------
Confidence            378899999888776421 123567 889999999887542111 111233556666665553 2211            


Q ss_pred             cccccccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEE
Q 013265          233 SGPILPFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEII  312 (446)
Q Consensus       233 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~  312 (446)
                          .+..+..+++|+.+++..+.+..    +..-+..+++|+.|++.+..+.        ......+..+++|++|.+.
T Consensus       104 ----~~~~~~~l~~L~~L~Ls~N~l~~----lp~~~~~l~~L~~L~L~~N~l~--------~~~~~~~~~l~~L~~L~l~  167 (229)
T 3e6j_A          104 ----PSAVFDRLVHLKELFMCCNKLTE----LPRGIERLTHLTHLALDQNQLK--------SIPHGAFDRLSSLTHAYLF  167 (229)
T ss_dssp             ----CTTTTTTCTTCCEEECCSSCCCS----CCTTGGGCTTCSEEECCSSCCC--------CCCTTTTTTCTTCCEEECT
T ss_pred             ----ChhHhCcchhhCeEeccCCcccc----cCcccccCCCCCEEECCCCcCC--------ccCHHHHhCCCCCCEEEee
Confidence                11234567788888887654332    1134478889999999884331        1112346678899999998


Q ss_pred             ecCCCC---CHHHHHHHHhh
Q 013265          313 GTPKVN---DLIFCIALLEA  329 (446)
Q Consensus       313 ~~~~~~---~~~~l~~ll~~  329 (446)
                      .+.-..   ++..+...+..
T Consensus       168 ~N~~~c~c~~~~~l~~~~~~  187 (229)
T 3e6j_A          168 GNPWDCECRDIMYLRNWVAD  187 (229)
T ss_dssp             TSCBCTTBGGGHHHHHHHHH
T ss_pred             CCCccCCcchhHHHHHHHHh
Confidence            875222   34455555543

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.24  E-value=0.00016  Score=71.11  Aligned_cols=38  Identities=29%  Similarity=0.521  Sum_probs=35.6

Q ss_pred             cCCcCCCCChHHHHHHHhCCChhHHHHHhhccchhhhh
Q 013265            4 EGDHINELPDDILVNILSRLTMKEAVRTSIISSRWRYL   41 (446)
Q Consensus         4 ~~D~is~LPd~iL~~ILs~Lp~kd~~rts~lSkrWr~l   41 (446)
                      ..|.|+.||+|++.+||++|+.+|+++++.|||+|+.+
T Consensus        15 ~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~   52 (445)
T 2ovr_B           15 QRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL   52 (445)
T ss_dssp             CCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH
T ss_pred             cCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhh
Confidence            36999999999999999999999999999999999863

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=97.24  E-value=0.00025  Score=62.12  Aligned_cols=103  Identities=17%  Similarity=0.072  Sum_probs=65.9

Q ss_pred             CceeEEEEccccc----ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCC
Q 013265          225 PNLLSFEYSGPIL----PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDI  300 (446)
Q Consensus       225 p~L~~l~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~  300 (446)
                      ++|++|++.+...    +..+.++++|+.+++..+.+.....   ..+..+++|+.|++..+.+.        ...+..+
T Consensus        52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~L~~N~l~--------~~~~~~~  120 (208)
T 2o6s_A           52 TSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPN---GVFDKLTQLKELALNTNQLQ--------SLPDGVF  120 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT---TTTTTCTTCCEEECCSSCCC--------CCCTTTT
T ss_pred             ccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCH---hHhcCccCCCEEEcCCCcCc--------ccCHhHh
Confidence            5566666555422    1235678889999997664332222   45678999999999884321        1112335


Q ss_pred             CCCCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEEe
Q 013265          301 PEMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLV  341 (446)
Q Consensus       301 ~~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~  341 (446)
                      ..+++|++|++..+.-.. +  ....+..+++|+.|++...
T Consensus       121 ~~l~~L~~L~l~~N~l~~-~--~~~~~~~l~~L~~L~l~~N  158 (208)
T 2o6s_A          121 DKLTQLKDLRLYQNQLKS-V--PDGVFDRLTSLQYIWLHDN  158 (208)
T ss_dssp             TTCTTCCEEECCSSCCSC-C--CTTTTTTCTTCCEEECCSC
T ss_pred             ccCCcCCEEECCCCccce-e--CHHHhccCCCccEEEecCC
Confidence            678999999999874111 1  1134678999999999654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=97.19  E-value=0.00013  Score=69.69  Aligned_cols=80  Identities=18%  Similarity=0.197  Sum_probs=45.6

Q ss_pred             ccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeE--eCCcCccceEEeeccCCCCeEE----EECCcee
Q 013265          155 RHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKV--SGPSLKLKHLKLNKLDNLKDLQ----LHAPNLL  228 (446)
Q Consensus       155 ~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i--~~~~~~L~~L~i~~~~~l~~~~----i~~p~L~  228 (446)
                      +++++|+|++..++.- -...+++ +++|++|+|.++...+.+..  -..+++++++.+.++..+..+.    -..++|+
T Consensus        30 ~~l~~L~Ls~N~i~~i-~~~~f~~-l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~  107 (350)
T 4ay9_X           30 RNAIELRFVLTKLRVI-QKGAFSG-FGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQ  107 (350)
T ss_dssp             TTCSEEEEESCCCSEE-CTTSSTT-CTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCC
T ss_pred             CCCCEEEccCCcCCCc-CHHHHcC-CCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccc
Confidence            5677788877665421 0112566 78888888887765443321  1233456655555554455542    1347777


Q ss_pred             EEEEcccc
Q 013265          229 SFEYSGPI  236 (446)
Q Consensus       229 ~l~~~~~~  236 (446)
                      +|.+.+..
T Consensus       108 ~L~l~~n~  115 (350)
T 4ay9_X          108 YLLISNTG  115 (350)
T ss_dssp             EEEEEEEC
T ss_pred             cccccccc
Confidence            77776653

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.15  E-value=0.00099  Score=56.44  Aligned_cols=105  Identities=9%  Similarity=0.140  Sum_probs=51.6

Q ss_pred             CceEEEEeecccccccchhcccccccCCCCCCcccEEEEEecCCCCCHHHHHHHHh---hCCCceEEEEEEecccccccc
Q 013265          273 QLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTPKVNDLIFCIALLE---AAPSLYKFSLKLVSQYDYESY  349 (446)
Q Consensus       273 ~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~ll~---~~p~L~~L~l~~~~~~~~~~~  349 (446)
                      +|+.|++++|.+.       ..++ ..+..+++|++|+|..|....+ .++..+-+   .||+|+.|+|+.+.  ..+ +
T Consensus        62 ~L~~LDLs~~~It-------d~GL-~~L~~~~~L~~L~L~~C~~ItD-~gL~~L~~~~~~~~~L~~L~Ls~C~--~IT-D  129 (176)
T 3e4g_A           62 KIQAIDATDSCIM-------SIGF-DHMEGLQYVEKIRLCKCHYIED-GCLERLSQLENLQKSMLEMEIISCG--NVT-D  129 (176)
T ss_dssp             CEEEEEEESCCCC-------GGGG-GGGTTCSCCCEEEEESCTTCCH-HHHHHHHTCHHHHHHCCEEEEESCT--TCC-H
T ss_pred             eEeEEeCcCCCcc-------HHHH-HHhcCCCCCCEEEeCCCCccCH-HHHHHHHhcccccCCCCEEEcCCCC--cCC-H
Confidence            4666666664321       1111 2234566777777777653333 24555544   25677777774431  122 2


Q ss_pred             cccccccCCCCccccccCCCcEEEEEeeecCcchHHHHHHHHhcCccc
Q 013265          350 ESVKTIKDQPYLSFTELRSIRVVELLGFVGHTADFELVMYLIFSAKLL  397 (446)
Q Consensus       350 ~~~~~~p~c~~~~~~~l~~L~~v~i~~~~g~~~e~~~~~~ll~~a~~L  397 (446)
                      ..+..+..|        .+|+.+.+.++.+..+.-..+..+-++.|.+
T Consensus       130 ~Gl~~L~~~--------~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l  169 (176)
T 3e4g_A          130 KGIIALHHF--------RNLKYLFLSDLPGVKEKEKIVQAFKTSLPSL  169 (176)
T ss_dssp             HHHHHGGGC--------TTCCEEEEESCTTCCCHHHHHHHHHHHCTTC
T ss_pred             HHHHHHhcC--------CCCCEEECCCCCCCCchHHHHHHHHHHCCCc
Confidence            222223333        5677777777755443322333344444443

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.14  E-value=0.0001  Score=72.36  Aligned_cols=37  Identities=32%  Similarity=0.512  Sum_probs=35.0

Q ss_pred             cCCcCCCCChH----HHHHHHhCCChhHHHHHhhccchhhh
Q 013265            4 EGDHINELPDD----ILVNILSRLTMKEAVRTSIISSRWRY   40 (446)
Q Consensus         4 ~~D~is~LPd~----iL~~ILs~Lp~kd~~rts~lSkrWr~   40 (446)
                      ..|.|+.||+|    |+.+||++|+.++.++++.|||+|++
T Consensus         7 ~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~   47 (435)
T 1p22_A            7 QRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYR   47 (435)
T ss_dssp             CCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHH
T ss_pred             hcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            36899999999    99999999999999999999999994

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.14  E-value=0.0018  Score=61.10  Aligned_cols=58  Identities=10%  Similarity=0.079  Sum_probs=35.8

Q ss_pred             ccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEEecCCCCCHHHHHHHHhhCCCce-EEEE
Q 013265          269 IFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLY-KFSL  338 (446)
Q Consensus       269 ~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~-~L~l  338 (446)
                      ..+++|+.|+|....+       . ..-...+..+.+|++|.|...-.  .+.  ...+.+|++|+ .+.+
T Consensus       223 ~~~~~L~~l~L~~n~i-------~-~I~~~aF~~~~~L~~l~l~~ni~--~I~--~~aF~~~~~L~~~l~l  281 (329)
T 3sb4_A          223 DYMPNLVSLDISKTNA-------T-TIPDFTFAQKKYLLKIKLPHNLK--TIG--QRVFSNCGRLAGTLEL  281 (329)
T ss_dssp             HHCTTCCEEECTTBCC-------C-EECTTTTTTCTTCCEEECCTTCC--EEC--TTTTTTCTTCCEEEEE
T ss_pred             HhcCCCeEEECCCCCc-------c-eecHhhhhCCCCCCEEECCcccc--eeh--HHHhhCChhccEEEEE
Confidence            3588899999876311       1 11123466788899988866521  110  11357889998 8888

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=97.05  E-value=0.00024  Score=73.12  Aligned_cols=146  Identities=16%  Similarity=0.077  Sum_probs=66.3

Q ss_pred             cccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCce--eEeCCcCccceEEeeccCCCCeEE----EECCce
Q 013265          154 FRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSL--KVSGPSLKLKHLKLNKLDNLKDLQ----LHAPNL  227 (446)
Q Consensus       154 ~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~--~i~~~~~~L~~L~i~~~~~l~~~~----i~~p~L  227 (446)
                      ..+|+.|.+........  ...+.. ++.|+.+.+..+......  .....+.+++.+.+..+. +..+.    -..++|
T Consensus       396 ~~~L~~L~~~~~~~~~~--~~~~~~-l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~-l~~~~~~~~~~~~~L  471 (635)
T 4g8a_A          396 TISLKYLDLSFNGVITM--SSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSL  471 (635)
T ss_dssp             CSCCCEEECCSCSEEEE--CSCCTT-CTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSC-CEECCTTTTTTCTTC
T ss_pred             hhhhhhhhccccccccc--cccccc-cccccchhhhhccccccccccccccccccccccccccc-cccccccccccchhh
Confidence            45666666654432211  111345 777777777654332211  111122445555554443 11110    123556


Q ss_pred             eEEEEcccc-----cccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCC
Q 013265          228 LSFEYSGPI-----LPFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPE  302 (446)
Q Consensus       228 ~~l~~~~~~-----~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~  302 (446)
                      +.|++.+..     .+..+..+++|+.++++.+.+....+   ..+..+++|+.|.|+++.+.        ...+..+..
T Consensus       472 ~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~---~~f~~l~~L~~L~Ls~N~l~--------~l~~~~~~~  540 (635)
T 4g8a_A          472 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP---TAFNSLSSLQVLNMSHNNFF--------SLDTFPYKC  540 (635)
T ss_dssp             CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT---TTTTTCTTCCEEECTTSCCC--------BCCCGGGTT
T ss_pred             hhhhhhhcccccccCchhhhhccccCEEECCCCccCCcCh---HHHcCCCCCCEEECCCCcCC--------CCChhHHhC
Confidence            666555442     12344555666666665543322222   33455666666666553221        011122344


Q ss_pred             CCcccEEEEEec
Q 013265          303 MCNLKHLEIIGT  314 (446)
Q Consensus       303 ~~~L~~L~L~~~  314 (446)
                      +++|+.|+|+.+
T Consensus       541 l~~L~~L~Ls~N  552 (635)
T 4g8a_A          541 LNSLQVLDYSLN  552 (635)
T ss_dssp             CTTCCEEECTTS
T ss_pred             CCCCCEEECCCC
Confidence            556666666555

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=96.98  E-value=0.00062  Score=60.28  Aligned_cols=126  Identities=18%  Similarity=0.109  Sum_probs=65.3

Q ss_pred             ccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhccccc-ccCCCCCCcccEEEEEecCCCC
Q 013265          240 SFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRY-LHDIPEMCNLKHLEIIGTPKVN  318 (446)
Q Consensus       240 ~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~  318 (446)
                      .+.++++|+.+++..+.+.....   ..+..+++|+.|+|++..+.         .+ ...+..+++|++|.|..+.-..
T Consensus        51 ~~~~l~~L~~L~Ls~N~i~~~~~---~~~~~l~~L~~L~Ls~N~l~---------~l~~~~f~~l~~L~~L~L~~N~l~~  118 (220)
T 2v9t_B           51 AFSPYKKLRRIDLSNNQISELAP---DAFQGLRSLNSLVLYGNKIT---------ELPKSLFEGLFSLQLLLLNANKINC  118 (220)
T ss_dssp             SSTTCTTCCEEECCSSCCCEECT---TTTTTCSSCCEEECCSSCCC---------CCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             HhhCCCCCCEEECCCCcCCCcCH---HHhhCCcCCCEEECCCCcCC---------ccCHhHccCCCCCCEEECCCCCCCE
Confidence            34556666666665543322212   34556677777777763221         11 1224556777777777764111


Q ss_pred             CHHHHHHHHhhCCCceEEEEEEecccccccccccccccCCCCccccccCCCcEEEEEe--eecCcchHHHHHHHHh
Q 013265          319 DLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTIKDQPYLSFTELRSIRVVELLG--FVGHTADFELVMYLIF  392 (446)
Q Consensus       319 ~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~p~c~~~~~~~l~~L~~v~i~~--~~g~~~e~~~~~~ll~  392 (446)
                      -.   ...+..+++|+.|++...         .+..++.-   .+..+.+|+++.+.+  +..+..-..+..++-.
T Consensus       119 ~~---~~~~~~l~~L~~L~L~~N---------~l~~~~~~---~~~~l~~L~~L~L~~N~~~c~c~l~~l~~~l~~  179 (220)
T 2v9t_B          119 LR---VDAFQDLHNLNLLSLYDN---------KLQTIAKG---TFSPLRAIQTMHLAQNPFICDCHLKWLADYLHT  179 (220)
T ss_dssp             CC---TTTTTTCTTCCEEECCSS---------CCSCCCTT---TTTTCTTCCEEECCSSCEECSGGGHHHHHHHHH
T ss_pred             eC---HHHcCCCCCCCEEECCCC---------cCCEECHH---HHhCCCCCCEEEeCCCCcCCCCccHHHHHHHHh
Confidence            00   123566788888887432         11111210   011236788888876  5555555555555443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=96.95  E-value=0.00082  Score=59.48  Aligned_cols=25  Identities=24%  Similarity=0.158  Sum_probs=13.5

Q ss_pred             CCCcEEEEEe--eecCcchHHHHHHHH
Q 013265          367 RSIRVVELLG--FVGHTADFELVMYLI  391 (446)
Q Consensus       367 ~~L~~v~i~~--~~g~~~e~~~~~~ll  391 (446)
                      .+|+++.+.+  +.+......+.+++-
T Consensus       153 ~~L~~L~L~~N~l~c~c~l~~l~~~~~  179 (220)
T 2v70_A          153 HSLSTLNLLANPFNCNCYLAWLGEWLR  179 (220)
T ss_dssp             TTCCEEECCSCCEECSGGGHHHHHHHH
T ss_pred             CCCCEEEecCcCCcCCCchHHHHHHHH
Confidence            5666666655  445544444544443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=96.88  E-value=7.3e-05  Score=65.13  Aligned_cols=15  Identities=20%  Similarity=0.217  Sum_probs=8.6

Q ss_pred             cCCCCCcceEEeccc
Q 013265          241 FRNVPNLVDASFWGC  255 (446)
Q Consensus       241 ~~~~~~L~~l~l~~~  255 (446)
                      +.++++|+.+++..+
T Consensus       136 l~~l~~L~~L~l~~N  150 (198)
T 1ds9_A          136 LAALDKLEDLLLAGN  150 (198)
T ss_dssp             HTTTTTCSEEEECSC
T ss_pred             HhcCCCCCEEEecCC
Confidence            445566666666554

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=96.79  E-value=0.00081  Score=64.41  Aligned_cols=149  Identities=16%  Similarity=0.125  Sum_probs=83.2

Q ss_pred             CCCcceeeEeccCCCCce--eEeCCcCccceEEeeccCCCCeEEE----ECCceeEEEEccccc----ccccCCCCCcce
Q 013265          180 CPVLEVLNVAESSSLTSL--KVSGPSLKLKHLKLNKLDNLKDLQL----HAPNLLSFEYSGPIL----PFSFRNVPNLVD  249 (446)
Q Consensus       180 cp~Le~L~L~~c~~~~~~--~i~~~~~~L~~L~i~~~~~l~~~~i----~~p~L~~l~~~~~~~----~~~~~~~~~L~~  249 (446)
                      .+.++.|+|.++......  .+...+++|+.|.+.++. +..+..    ..++|++|++++...    +..+.++++|+.
T Consensus        38 ~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  116 (361)
T 2xot_A           38 PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEV  116 (361)
T ss_dssp             CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred             CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCE
Confidence            445888888887532211  111144788888888776 555432    247788888877643    234567788888


Q ss_pred             EEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEEecCCCCCHHHHHHHHhh
Q 013265          250 ASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTPKVNDLIFCIALLEA  329 (446)
Q Consensus       250 l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~ll~~  329 (446)
                      +++..+.+.....   ..+..+++|+.|.|.++.+...    . ......+..+++|++|+|..+.-.. +.  ...+..
T Consensus       117 L~L~~N~i~~~~~---~~~~~l~~L~~L~L~~N~l~~l----~-~~~~~~~~~l~~L~~L~L~~N~l~~-l~--~~~~~~  185 (361)
T 2xot_A          117 LLLYNNHIVVVDR---NAFEDMAQLQKLYLSQNQISRF----P-VELIKDGNKLPKLMLLDLSSNKLKK-LP--LTDLQK  185 (361)
T ss_dssp             EECCSSCCCEECT---TTTTTCTTCCEEECCSSCCCSC----C-GGGTC----CTTCCEEECCSSCCCC-CC--HHHHHH
T ss_pred             EECCCCcccEECH---HHhCCcccCCEEECCCCcCCee----C-HHHhcCcccCCcCCEEECCCCCCCc-cC--HHHhhh
Confidence            8887664332222   4456778888888877433210    0 0001111456788888887774111 10  123445


Q ss_pred             CCC--ceEEEEEE
Q 013265          330 APS--LYKFSLKL  340 (446)
Q Consensus       330 ~p~--L~~L~l~~  340 (446)
                      .|+  |+.|++..
T Consensus       186 l~~~~l~~l~l~~  198 (361)
T 2xot_A          186 LPAWVKNGLYLHN  198 (361)
T ss_dssp             SCHHHHTTEECCS
T ss_pred             ccHhhcceEEecC
Confidence            555  36677754

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=96.77  E-value=4.1e-05  Score=66.76  Aligned_cols=38  Identities=26%  Similarity=0.470  Sum_probs=21.5

Q ss_pred             CCCCCcccEEEEEecCCCCC-------HHHHHHHHhhCCCceEEE
Q 013265          300 IPEMCNLKHLEIIGTPKVND-------LIFCIALLEAAPSLYKFS  337 (446)
Q Consensus       300 ~~~~~~L~~L~L~~~~~~~~-------~~~l~~ll~~~p~L~~L~  337 (446)
                      +..+++|++|.+..+.-...       ......++..+|+|+.|+
T Consensus       136 l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          136 LAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred             HhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence            34556677777666531000       122345678888888775

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=96.74  E-value=0.0023  Score=60.87  Aligned_cols=63  Identities=13%  Similarity=0.228  Sum_probs=31.8

Q ss_pred             cccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCcee--EeCCcCccceEEeeccC
Q 013265          152 SSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLK--VSGPSLKLKHLKLNKLD  215 (446)
Q Consensus       152 ~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~--i~~~~~~L~~L~i~~~~  215 (446)
                      .++++|++|+|++..+.+.--...+.+ ++.|+++...++..+..+.  .-..+++|+.|.+.++.
T Consensus        51 ~~l~~L~~L~Ls~N~i~~~i~~~~f~~-L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~  115 (350)
T 4ay9_X           51 SGFGDLEKIEISQNDVLEVIEADVFSN-LPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG  115 (350)
T ss_dssp             TTCTTCCEEEEECCTTCCEECTTSBCS-CTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEEC
T ss_pred             cCCCCCCEEECcCCCCCCccChhHhhc-chhhhhhhcccCCcccccCchhhhhccccccccccccc
Confidence            456777777777655322100112445 6666665555544444331  11233566666666654

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=96.67  E-value=0.0014  Score=56.36  Aligned_cols=70  Identities=17%  Similarity=0.161  Sum_probs=36.4

Q ss_pred             hhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEE--EecC-CCCCHHHHHHHHhhCCCceEEEEE
Q 013265          266 QHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEI--IGTP-KVNDLIFCIALLEAAPSLYKFSLK  339 (446)
Q Consensus       266 ~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L--~~~~-~~~~~~~l~~ll~~~p~L~~L~l~  339 (446)
                      ..+...++|+.|+|+++.+...    ....+...+...++|++|+|  ..+. .......+...++.+++|++|++.
T Consensus        87 ~~L~~n~~L~~L~L~~N~i~~~----g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~  159 (185)
T 1io0_A           87 EMLKVNNTLKSLNVESNFISGS----GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYH  159 (185)
T ss_dssp             HHHHHCSSCCEEECCSSCCCHH----HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred             HHHHhCCCcCEEECcCCcCCHH----HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEecc
Confidence            4455556677777666433211    11112223344456666666  3332 222234566677777777777774

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=96.60  E-value=0.0019  Score=60.83  Aligned_cols=80  Identities=16%  Similarity=0.069  Sum_probs=50.0

Q ss_pred             CCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCccc-EEEEEecCCCCCHH
Q 013265          243 NVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLK-HLEIIGTPKVNDLI  321 (446)
Q Consensus       243 ~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~L~~~~~~~~~~  321 (446)
                      .+++|+++++..+.......   ..+..+++|+.|.+... +       . ..-...+..+++|+ .+.+...-..-.  
T Consensus       224 ~~~~L~~l~L~~n~i~~I~~---~aF~~~~~L~~l~l~~n-i-------~-~I~~~aF~~~~~L~~~l~l~~~l~~I~--  289 (329)
T 3sb4_A          224 YMPNLVSLDISKTNATTIPD---FTFAQKKYLLKIKLPHN-L-------K-TIGQRVFSNCGRLAGTLELPASVTAIE--  289 (329)
T ss_dssp             HCTTCCEEECTTBCCCEECT---TTTTTCTTCCEEECCTT-C-------C-EECTTTTTTCTTCCEEEEECTTCCEEC--
T ss_pred             hcCCCeEEECCCCCcceecH---hhhhCCCCCCEEECCcc-c-------c-eehHHHhhCChhccEEEEEcccceEEc--
Confidence            37788888887643332223   55678889999988762 1       1 11133456778888 888866321100  


Q ss_pred             HHHHHHhhCCCceEEEE
Q 013265          322 FCIALLEAAPSLYKFSL  338 (446)
Q Consensus       322 ~l~~ll~~~p~L~~L~l  338 (446)
                        ...+.+|++|+++++
T Consensus       290 --~~aF~~c~~L~~l~l  304 (329)
T 3sb4_A          290 --FGAFMGCDNLRYVLA  304 (329)
T ss_dssp             --TTTTTTCTTEEEEEE
T ss_pred             --hhhhhCCccCCEEEe
Confidence              123678999999997

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=96.59  E-value=0.00059  Score=69.56  Aligned_cols=121  Identities=17%  Similarity=0.091  Sum_probs=78.0

Q ss_pred             CCcceeeEeccCCCCceeEeCCcCccceEEeeccCCCCeEE---EECCceeEEEEcccc---cccccCCCCCcceEEecc
Q 013265          181 PVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQ---LHAPNLLSFEYSGPI---LPFSFRNVPNLVDASFWG  254 (446)
Q Consensus       181 p~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~l~~~~---i~~p~L~~l~~~~~~---~~~~~~~~~~L~~l~l~~  254 (446)
                      ..|+.|++.++....... ...+++|+.|.++++. +..+.   -..++|+.|++++..   ++ .++++++|+.++++.
T Consensus       441 ~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~  517 (567)
T 1dce_A          441 ADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCN  517 (567)
T ss_dssp             TTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCS
T ss_pred             cCceEEEecCCCCCCCcC-ccccccCcEeecCccc-ccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCC
Confidence            368899998875443223 3345789999998876 54331   135889999988773   34 678899999999987


Q ss_pred             cchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEE
Q 013265          255 CFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEI  311 (446)
Q Consensus       255 ~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L  311 (446)
                      +.+....  ....+..+++|+.|.|+++.+...    . .........+++|+.|.+
T Consensus       518 N~l~~~~--~p~~l~~l~~L~~L~L~~N~l~~~----~-~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          518 NRLQQSA--AIQPLVSCPRLVLLNLQGNSLCQE----E-GIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             SCCCSSS--TTGGGGGCTTCCEEECTTSGGGGS----S-SCTTHHHHHCTTCSEEEC
T ss_pred             CCCCCCC--CcHHHhcCCCCCEEEecCCcCCCC----c-cHHHHHHHHCcccCccCC
Confidence            6443321  025677899999999998543211    0 001111223788888853

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=96.56  E-value=0.0029  Score=54.54  Aligned_cols=80  Identities=20%  Similarity=0.249  Sum_probs=43.7

Q ss_pred             CceeEEEEccccc----ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCC
Q 013265          225 PNLLSFEYSGPIL----PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDI  300 (446)
Q Consensus       225 p~L~~l~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~  300 (446)
                      ++|++|++.+..+    +..+.++++|+.+++..+.+.....   ..+..+++|+.|++.+..+.        ...+..+
T Consensus        54 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~L~~N~l~--------~~~~~~~  122 (192)
T 1w8a_A           54 PHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISN---KMFLGLHQLKTLNLYDNQIS--------CVMPGSF  122 (192)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECS---SSSTTCTTCCEEECCSSCCC--------EECTTSS
T ss_pred             CCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCH---HHhcCCCCCCEEECCCCcCC--------eeCHHHh
Confidence            4555555554422    2345566777777776553332222   33456677777777763221        1123445


Q ss_pred             CCCCcccEEEEEecC
Q 013265          301 PEMCNLKHLEIIGTP  315 (446)
Q Consensus       301 ~~~~~L~~L~L~~~~  315 (446)
                      ..+++|++|.+..+.
T Consensus       123 ~~l~~L~~L~L~~N~  137 (192)
T 1w8a_A          123 EHLNSLTSLNLASNP  137 (192)
T ss_dssp             TTCTTCCEEECTTCC
T ss_pred             hcCCCCCEEEeCCCC
Confidence            566777777776664

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=96.54  E-value=0.0006  Score=65.65  Aligned_cols=162  Identities=14%  Similarity=0.073  Sum_probs=95.3

Q ss_pred             CccceEEeeccCCCCeEE---------EECCceeEEEEcccccc-----cccCCCCCcceEEecccchhh-hhhhhhhhh
Q 013265          204 LKLKHLKLNKLDNLKDLQ---------LHAPNLLSFEYSGPILP-----FSFRNVPNLVDASFWGCFSAY-IAKNLCQHS  268 (446)
Q Consensus       204 ~~L~~L~i~~~~~l~~~~---------i~~p~L~~l~~~~~~~~-----~~~~~~~~L~~l~l~~~~~~~-~~~~l~~~l  268 (446)
                      +.|++|.+++|. +....         -..++|++|+++++...     .....+++|+.+++..+.+.. ....+...+
T Consensus        72 ~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           72 SSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             TTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             hhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            579999999887 33211         12368999999887542     112235678889987765432 223333444


Q ss_pred             -ccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEEecC-CCCCHHHHHHHHhhCCCceEEEEEEeccccc
Q 013265          269 -IFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTP-KVNDLIFCIALLEAAPSLYKFSLKLVSQYDY  346 (446)
Q Consensus       269 -~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~-~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~  346 (446)
                       ...++|+.|+|.++.+...    ....+...+...++|++|+|..+. .......+...+..+++|++|++..+   ..
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~----~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N---~i  223 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAA----GVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN---GA  223 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHH----HHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS---CC
T ss_pred             HhcCCccceeeCCCCCCChH----HHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC---CC
Confidence             3578899999998654211    111222334567889999998875 22223456677888899999998543   32


Q ss_pred             ccccccccccCCCCccccccCCCcEEEEEeee
Q 013265          347 ESYESVKTIKDQPYLSFTELRSIRVVELLGFV  378 (446)
Q Consensus       347 ~~~~~~~~~p~c~~~~~~~l~~L~~v~i~~~~  378 (446)
                      .+.+. ..+...+    ..+.+|+++.+.+..
T Consensus       224 ~~~g~-~~l~~~L----~~~~~L~~L~Ls~N~  250 (372)
T 3un9_A          224 GDTAA-LALARAA----REHPSLELLHLYFNE  250 (372)
T ss_dssp             CHHHH-HHHHHHH----HHCSSCCEEECTTSS
T ss_pred             CHHHH-HHHHHHH----HhCCCCCEEeccCCC
Confidence            22211 1111100    012679999887654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=96.41  E-value=0.00064  Score=65.13  Aligned_cols=125  Identities=14%  Similarity=0.038  Sum_probs=66.9

Q ss_pred             ccccceEEEEEEeChHHHHHHHh-cCCCCcceeeEeccCCCCce-eEeCCcCccceEEeeccCCCCeEEE----ECCcee
Q 013265          155 RHLTDLSLTTVGITGEVLEHLLC-YCCPVLEVLNVAESSSLTSL-KVSGPSLKLKHLKLNKLDNLKDLQL----HAPNLL  228 (446)
Q Consensus       155 ~~L~~L~L~~~~~~~~~l~~ll~-~~cp~Le~L~L~~c~~~~~~-~i~~~~~~L~~L~i~~~~~l~~~~i----~~p~L~  228 (446)
                      +.++.|+|++..++.-.. ..+. + +++|+.|.|.++...... .....+++|++|.++++. +..+.-    ..++|+
T Consensus        39 ~~l~~L~Ls~N~l~~l~~-~~~~~~-l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~  115 (361)
T 2xot_A           39 SYTALLDLSHNNLSRLRA-EWTPTR-LTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH-LHTLDEFLFSDLQALE  115 (361)
T ss_dssp             TTCSEEECCSSCCCEECT-TSSSSC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCC
T ss_pred             CCCCEEECCCCCCCccCh-hhhhhc-ccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc-CCcCCHHHhCCCcCCC
Confidence            346667776665543211 1133 5 777777777666432111 011233567777777665 444422    236777


Q ss_pred             EEEEccccc----ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeec
Q 013265          229 SFEYSGPIL----PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTC  282 (446)
Q Consensus       229 ~l~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~  282 (446)
                      .|++.+..+    +..+.++++|+.+++..+.+.........-+..+++|+.|+|.+.
T Consensus       116 ~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N  173 (361)
T 2xot_A          116 VLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN  173 (361)
T ss_dssp             EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSS
T ss_pred             EEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCC
Confidence            777776643    234667788888888765433222211111156788888888774

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=96.33  E-value=0.0039  Score=53.81  Aligned_cols=78  Identities=17%  Similarity=0.094  Sum_probs=40.2

Q ss_pred             cCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEEecC--CCC
Q 013265          241 FRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTP--KVN  318 (446)
Q Consensus       241 ~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~--~~~  318 (446)
                      +.++++|+.++++.+.+.....   ..+..+++|+.|.|.+..+.        ......+..+++|++|.+..+.  -..
T Consensus        74 f~~l~~L~~L~Ls~N~l~~i~~---~~f~~l~~L~~L~L~~N~l~--------~~~~~~~~~l~~L~~L~L~~N~~~C~c  142 (193)
T 2wfh_A           74 FSNMTQLLTLILSYNRLRCIPP---RTFDGLKSLRLLSLHGNDIS--------VVPEGAFNDLSALSHLAIGANPLYCDC  142 (193)
T ss_dssp             TTTCTTCCEEECCSSCCCBCCT---TTTTTCTTCCEEECCSSCCC--------BCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred             ccCCCCCCEEECCCCccCEeCH---HHhCCCCCCCEEECCCCCCC--------eeChhhhhcCccccEEEeCCCCeecCC
Confidence            3444555555554432222211   33456677777777763221        0111234566788888887764  234


Q ss_pred             CHHHHHHHHhh
Q 013265          319 DLIFCIALLEA  329 (446)
Q Consensus       319 ~~~~l~~ll~~  329 (446)
                      +..++...++.
T Consensus       143 ~l~~l~~~~~~  153 (193)
T 2wfh_A          143 NMQWLSDWVKS  153 (193)
T ss_dssp             GGHHHHHHHHH
T ss_pred             cCHHHHHHHHh
Confidence            44556655554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=96.23  E-value=0.0029  Score=54.25  Aligned_cols=127  Identities=11%  Similarity=0.098  Sum_probs=75.7

Q ss_pred             hhhhhccCCCceEEEEeec-ccccccchhcccccccCCCCCCcccEEEEEecC-CCCCHHHHHHHHhhCCCceEEEEEEe
Q 013265          264 LCQHSIFLVQLHTLKLDTC-HLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTP-KVNDLIFCIALLEAAPSLYKFSLKLV  341 (446)
Q Consensus       264 l~~~l~~l~~l~~L~L~~~-~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~-~~~~~~~l~~ll~~~p~L~~L~l~~~  341 (446)
                      +..++...++|++|.|..+ .+...    ....+...+...++|++|+|..+. .......+...++..++|++|+|...
T Consensus        28 l~~~l~~~~~L~~L~L~~n~~i~~~----g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N  103 (185)
T 1io0_A           28 LKRIQNNDPDLEEVNLNNIMNIPVP----TLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN  103 (185)
T ss_dssp             HHHHHTTCTTCCEEECTTCTTCCHH----HHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred             HHHHHhcCCCCCEEEecCCCCCCHH----HHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC
Confidence            4467777888888888875 43211    111222334556788888888775 33334567778888899999988432


Q ss_pred             cccccccccc--c-ccccCCCCccccccCCCcEEEE--Eeee-cCcchHHHHHHHHhcCccccceEEecCC
Q 013265          342 SQYDYESYES--V-KTIKDQPYLSFTELRSIRVVEL--LGFV-GHTADFELVMYLIFSAKLLEKIIIDPCP  406 (446)
Q Consensus       342 ~~~~~~~~~~--~-~~~p~c~~~~~~~l~~L~~v~i--~~~~-g~~~e~~~~~~ll~~a~~Le~l~i~~~~  406 (446)
                         ...+.+.  + ..+..+        .+|+++.+  .+-. |.+....+++ .+++.+.|+++.+....
T Consensus       104 ---~i~~~g~~~l~~~L~~n--------~~L~~L~L~~~~N~i~~~g~~~l~~-~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          104 ---FISGSGILALVEALQSN--------TSLIELRIDNQSQPLGNNVEMEIAN-MLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             ---CCCHHHHHHHHHGGGGC--------SSCCEEECCCCSSCCCHHHHHHHHH-HHHHCSSCCEEECCCSS
T ss_pred             ---cCCHHHHHHHHHHHHhC--------CCceEEEecCCCCCCCHHHHHHHHH-HHHhCCCcCEEeccCCC
Confidence               3332221  1 112222        67999999  4433 3333334444 44666789999886543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=96.19  E-value=0.0025  Score=64.90  Aligned_cols=14  Identities=21%  Similarity=0.444  Sum_probs=10.6

Q ss_pred             HHHHhcCCCCcceee
Q 013265          173 EHLLCYCCPVLEVLN  187 (446)
Q Consensus       173 ~~ll~~~cp~Le~L~  187 (446)
                      ...+.. +++|+.|+
T Consensus       402 ~~~l~~-l~~L~~L~  415 (567)
T 1dce_A          402 KETLQY-FSTLKAVD  415 (567)
T ss_dssp             HHHHHH-HHHHHHHC
T ss_pred             HHHHHH-HHhcccCc
Confidence            345677 88899888

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=96.04  E-value=0.0021  Score=55.41  Aligned_cols=60  Identities=17%  Similarity=0.120  Sum_probs=37.4

Q ss_pred             ccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCce-eEeCCcCccceEEeeccC
Q 013265          155 RHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSL-KVSGPSLKLKHLKLNKLD  215 (446)
Q Consensus       155 ~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~-~i~~~~~~L~~L~i~~~~  215 (446)
                      ++|++|.|.+..++.-.-...+.. +++|++|+|.++...... .....+++|+.|.++++.
T Consensus        29 ~~l~~L~l~~n~i~~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~   89 (192)
T 1w8a_A           29 LHTTELLLNDNELGRISSDGLFGR-LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK   89 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGG-CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             CCCCEEECCCCcCCccCCcccccc-CCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence            488888888877654322223567 889999999887543321 111233567777777665

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=96.04  E-value=0.0075  Score=50.96  Aligned_cols=64  Identities=19%  Similarity=0.101  Sum_probs=30.7

Q ss_pred             cCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEEecC
Q 013265          241 FRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTP  315 (446)
Q Consensus       241 ~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~  315 (446)
                      +.++++|+.+++..+.+.....   ..+..+++|+.|++..+.+.        ......+..+++|++|.+..+.
T Consensus        72 ~~~l~~L~~L~l~~N~l~~~~~---~~~~~l~~L~~L~l~~N~l~--------~~~~~~~~~l~~L~~L~l~~N~  135 (177)
T 2o6r_A           72 FDKLTKLTILYLHENKLQSLPN---GVFDKLTQLKELALDTNQLK--------SVPDGIFDRLTSLQKIWLHTNP  135 (177)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCT---TTTTTCTTCCEEECCSSCCS--------CCCTTTTTTCTTCCEEECCSSC
T ss_pred             ccCCCccCEEECCCCCccccCH---HHhhCCcccCEEECcCCcce--------EeCHHHhcCCcccCEEEecCCC
Confidence            3455666666665443221111   33455666666666653221        0111123445666666666654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=95.98  E-value=0.0037  Score=65.70  Aligned_cols=110  Identities=18%  Similarity=0.113  Sum_probs=51.9

Q ss_pred             HHHhcCCCCcceeeEeccCCCCceeEeCCcCccceEEeeccCCCCeEEEECCceeEEEEcccccccccCCCCCcceEEec
Q 013265          174 HLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQLHAPNLLSFEYSGPILPFSFRNVPNLVDASFW  253 (446)
Q Consensus       174 ~ll~~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~l~~~~i~~p~L~~l~~~~~~~~~~~~~~~~L~~l~l~  253 (446)
                      ..+.. ++.|+.|+|.++.......-...+++|++|.++++. +..+                 +-.+.++++|+.++++
T Consensus       218 ~~~~~-l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~-l~~l-----------------p~~~~~l~~L~~L~Ls  278 (727)
T 4b8c_D          218 DSKYD-DQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNS-LTEL-----------------PAEIKNLSNLRVLDLS  278 (727)
T ss_dssp             ----C-CCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSC-CSCC-----------------CGGGGGGTTCCEEECT
T ss_pred             hhhcc-CCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCc-Cccc-----------------ChhhhCCCCCCEEeCc
Confidence            34556 777777777776543211101123556666665554 2211                 2234455555555555


Q ss_pred             ccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEEecC
Q 013265          254 GCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTP  315 (446)
Q Consensus       254 ~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~  315 (446)
                      .+.+..    +..-+..+++|+.|.|..+.+         ..++..+..+++|+.|+|..+.
T Consensus       279 ~N~l~~----lp~~~~~l~~L~~L~L~~N~l---------~~lp~~~~~l~~L~~L~L~~N~  327 (727)
T 4b8c_D          279 HNRLTS----LPAELGSCFQLKYFYFFDNMV---------TTLPWEFGNLCNLQFLGVEGNP  327 (727)
T ss_dssp             TSCCSS----CCSSGGGGTTCSEEECCSSCC---------CCCCSSTTSCTTCCCEECTTSC
T ss_pred             CCcCCc----cChhhcCCCCCCEEECCCCCC---------CccChhhhcCCCccEEeCCCCc
Confidence            443221    113344556666666665321         1233345556666666666553

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=95.57  E-value=0.011  Score=49.81  Aligned_cols=105  Identities=14%  Similarity=0.097  Sum_probs=51.5

Q ss_pred             hccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEEecccccc
Q 013265          268 SIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLVSQYDYE  347 (446)
Q Consensus       268 l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~  347 (446)
                      +..+++|+.|++.++.+.        ...+..+..+++|++|.+..+.-..-   ....+..+++|+.|++...      
T Consensus        48 ~~~l~~L~~L~l~~n~l~--------~~~~~~~~~l~~L~~L~l~~N~l~~~---~~~~~~~l~~L~~L~l~~N------  110 (177)
T 2o6r_A           48 FDKLTQLTKLSLSQNQIQ--------SLPDGVFDKLTKLTILYLHENKLQSL---PNGVFDKLTQLKELALDTN------  110 (177)
T ss_dssp             TTTCTTCSEEECCSSCCC--------CCCTTTTTTCTTCCEEECCSSCCCCC---CTTTTTTCTTCCEEECCSS------
T ss_pred             hcCcccccEEECCCCcce--------EeChhHccCCCccCEEECCCCCcccc---CHHHhhCCcccCEEECcCC------
Confidence            445566666666653221        01112234566777777766531110   0113456777888777432      


Q ss_pred             cccccccccCCCCccccccCCCcEEEEEe--eecCcchHHHHHHHHhcCc
Q 013265          348 SYESVKTIKDQPYLSFTELRSIRVVELLG--FVGHTADFELVMYLIFSAK  395 (446)
Q Consensus       348 ~~~~~~~~p~c~~~~~~~l~~L~~v~i~~--~~g~~~e~~~~~~ll~~a~  395 (446)
                         .+..+|...   +..+.+|+++.+.+  +.+....+..+...+.+..
T Consensus       111 ---~l~~~~~~~---~~~l~~L~~L~l~~N~~~~~~~~l~~l~~~~~~~~  154 (177)
T 2o6r_A          111 ---QLKSVPDGI---FDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNS  154 (177)
T ss_dssp             ---CCSCCCTTT---TTTCTTCCEEECCSSCBCCCHHHHHHHHHHHHHTG
T ss_pred             ---cceEeCHHH---hcCCcccCEEEecCCCeeccCccHHHHHHHHhhCc
Confidence               111222211   11236788888876  4455555555554455443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=95.50  E-value=0.01  Score=51.07  Aligned_cols=102  Identities=12%  Similarity=0.032  Sum_probs=50.3

Q ss_pred             hccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEEecccccc
Q 013265          268 SIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLVSQYDYE  347 (446)
Q Consensus       268 l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~  347 (446)
                      +..+++|+.|+++...+.        ...+..+..+++|++|.|..+.-..-.   ...+...++|+.|++...      
T Consensus        50 ~~~l~~L~~L~Ls~N~i~--------~i~~~~f~~l~~L~~L~Ls~N~l~~i~---~~~f~~l~~L~~L~L~~N------  112 (193)
T 2wfh_A           50 LSNYKHLTLIDLSNNRIS--------TLSNQSFSNMTQLLTLILSYNRLRCIP---PRTFDGLKSLRLLSLHGN------  112 (193)
T ss_dssp             GGGCTTCCEEECCSSCCC--------CCCTTTTTTCTTCCEEECCSSCCCBCC---TTTTTTCTTCCEEECCSS------
T ss_pred             hhcccCCCEEECCCCcCC--------EeCHhHccCCCCCCEEECCCCccCEeC---HHHhCCCCCCCEEECCCC------
Confidence            445666666666653221        111223455666777776665311000   112456677777777432      


Q ss_pred             cccccccccCCCCccccccCCCcEEEEEe--eecCcchHHHHHHHHh
Q 013265          348 SYESVKTIKDQPYLSFTELRSIRVVELLG--FVGHTADFELVMYLIF  392 (446)
Q Consensus       348 ~~~~~~~~p~c~~~~~~~l~~L~~v~i~~--~~g~~~e~~~~~~ll~  392 (446)
                         .+..++.-   .+..+.+|+.+.+.+  +.++..-..+..++-.
T Consensus       113 ---~l~~~~~~---~~~~l~~L~~L~L~~N~~~C~c~l~~l~~~~~~  153 (193)
T 2wfh_A          113 ---DISVVPEG---AFNDLSALSHLAIGANPLYCDCNMQWLSDWVKS  153 (193)
T ss_dssp             ---CCCBCCTT---TTTTCTTCCEEECCSSCEECSGGGHHHHHHHHH
T ss_pred             ---CCCeeChh---hhhcCccccEEEeCCCCeecCCcCHHHHHHHHh
Confidence               11122221   111346778887776  5555555556555544

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=95.20  E-value=0.026  Score=47.35  Aligned_cols=99  Identities=15%  Similarity=0.161  Sum_probs=61.3

Q ss_pred             CceeEEEEccccc----ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCC
Q 013265          225 PNLLSFEYSGPIL----PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDI  300 (446)
Q Consensus       225 p~L~~l~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~  300 (446)
                      ++|++|++.+..+    +-.+.++++|+.+++..+.+.....   ..+..+++|+.|.|....+.        ...+..+
T Consensus        30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~---~~f~~l~~L~~L~L~~N~l~--------~~~~~~~   98 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPA---GVFDKLTQLTQLSLNDNQLK--------SIPRGAF   98 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT---TTTTTCTTCCEEECCSSCCC--------CCCTTTT
T ss_pred             CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccCh---hhccCCCCCCEEECCCCccC--------EeCHHHh
Confidence            5666666665532    3346678888888887764443222   45577889999998874321        1112245


Q ss_pred             CCCCcccEEEEEecCC---CCCHHHHHHHHhhCCCce
Q 013265          301 PEMCNLKHLEIIGTPK---VNDLIFCIALLEAAPSLY  334 (446)
Q Consensus       301 ~~~~~L~~L~L~~~~~---~~~~~~l~~ll~~~p~L~  334 (446)
                      ..+++|++|.|..+.-   -.++..+...++..+.+.
T Consensus        99 ~~l~~L~~L~L~~N~~~c~c~~l~~l~~~l~~~~~~~  135 (170)
T 3g39_A           99 DNLKSLTHIWLLNNPWDCACSDILYLSRWISQHPGLV  135 (170)
T ss_dssp             TTCTTCCEEECCSSCBCTTBGGGHHHHHHHHHCGGGE
T ss_pred             cCCCCCCEEEeCCCCCCCCchhHHHHHHHHHhCccee
Confidence            6778899999988752   123556666666665443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=95.09  E-value=0.04  Score=53.33  Aligned_cols=38  Identities=18%  Similarity=0.191  Sum_probs=18.3

Q ss_pred             CCCCCCcccEEEEEecCCC----CCHHHHHHHHhhCCCceEEEE
Q 013265          299 DIPEMCNLKHLEIIGTPKV----NDLIFCIALLEAAPSLYKFSL  338 (446)
Q Consensus       299 ~~~~~~~L~~L~L~~~~~~----~~~~~l~~ll~~~p~L~~L~l  338 (446)
                      .+..+++|+.+.+......    ..+  -...+.+|++|+++.+
T Consensus       266 aF~~c~~L~~l~l~~~~~~~~~~~~I--~~~aF~~c~~L~~l~l  307 (401)
T 4fdw_A          266 AFYYCPELAEVTTYGSTFNDDPEAMI--HPYCLEGCPKLARFEI  307 (401)
T ss_dssp             TTTTCTTCCEEEEESSCCCCCTTCEE--CTTTTTTCTTCCEECC
T ss_pred             HhhCCCCCCEEEeCCccccCCcccEE--CHHHhhCCccCCeEEe
Confidence            3445666666666543210    000  0113456666666665

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=94.95  E-value=0.036  Score=53.68  Aligned_cols=127  Identities=15%  Similarity=0.145  Sum_probs=66.3

Q ss_pred             CCceeEEEEccccc---ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCC
Q 013265          224 APNLLSFEYSGPIL---PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDI  300 (446)
Q Consensus       224 ~p~L~~l~~~~~~~---~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~  300 (446)
                      +++|+.+.+.+...   ...+.+ ..|+++.+... +.....   ..+..+++|+.+.+........   .....-...+
T Consensus       225 ~~~L~~l~l~~~l~~I~~~aF~~-~~L~~i~lp~~-i~~I~~---~aF~~c~~L~~l~l~~~~~~~~---~~~~I~~~aF  296 (401)
T 4fdw_A          225 TSQLKTIEIPENVSTIGQEAFRE-SGITTVKLPNG-VTNIAS---RAFYYCPELAEVTTYGSTFNDD---PEAMIHPYCL  296 (401)
T ss_dssp             CTTCCCEECCTTCCEECTTTTTT-CCCSEEEEETT-CCEECT---TTTTTCTTCCEEEEESSCCCCC---TTCEECTTTT
T ss_pred             CCCCCEEecCCCccCcccccccc-CCccEEEeCCC-ccEECh---hHhhCCCCCCEEEeCCccccCC---cccEECHHHh
Confidence            45566665543311   122333 56777777432 111112   4567888999999876322100   0001113346


Q ss_pred             CCCCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEEeccccccccccccccc-CCCCccccccCCCcEEEEEee
Q 013265          301 PEMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTIK-DQPYLSFTELRSIRVVELLGF  377 (446)
Q Consensus       301 ~~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~p-~c~~~~~~~l~~L~~v~i~~~  377 (446)
                      ..+++|+.+.|...-..-.    ...+.+|++|+++.|.          ..+..+. .+    |..| +|+.|.+.+-
T Consensus       297 ~~c~~L~~l~l~~~i~~I~----~~aF~~c~~L~~l~lp----------~~l~~I~~~a----F~~~-~L~~l~l~~n  355 (401)
T 4fdw_A          297 EGCPKLARFEIPESIRILG----QGLLGGNRKVTQLTIP----------ANVTQINFSA----FNNT-GIKEVKVEGT  355 (401)
T ss_dssp             TTCTTCCEECCCTTCCEEC----TTTTTTCCSCCEEEEC----------TTCCEECTTS----SSSS-CCCEEEECCS
T ss_pred             hCCccCCeEEeCCceEEEh----hhhhcCCCCccEEEEC----------ccccEEcHHh----CCCC-CCCEEEEcCC
Confidence            6788899888864321100    1135789999999982          1122221 22    2255 7888888763

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=94.75  E-value=0.0039  Score=65.56  Aligned_cols=101  Identities=13%  Similarity=0.004  Sum_probs=67.9

Q ss_pred             CCceeEEEEccccc---ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCC
Q 013265          224 APNLLSFEYSGPIL---PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDI  300 (446)
Q Consensus       224 ~p~L~~l~~~~~~~---~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~  300 (446)
                      .++|+.|++++...   +..+.++++|+.+++..+.+.    .+..-+..+++|+.|+|+++.+       .  .++..+
T Consensus       223 l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~----~lp~~~~~l~~L~~L~Ls~N~l-------~--~lp~~~  289 (727)
T 4b8c_D          223 DQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT----ELPAEIKNLSNLRVLDLSHNRL-------T--SLPAEL  289 (727)
T ss_dssp             CCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS----CCCGGGGGGTTCCEEECTTSCC-------S--SCCSSG
T ss_pred             CCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc----ccChhhhCCCCCCEEeCcCCcC-------C--ccChhh
Confidence            45566666665532   333447888999998776443    1224457899999999998533       1  345667


Q ss_pred             CCCCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEEe
Q 013265          301 PEMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLV  341 (446)
Q Consensus       301 ~~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~  341 (446)
                      ..+++|++|.|..+.-. .+   ..-+..+++|+.|+|...
T Consensus       290 ~~l~~L~~L~L~~N~l~-~l---p~~~~~l~~L~~L~L~~N  326 (727)
T 4b8c_D          290 GSCFQLKYFYFFDNMVT-TL---PWEFGNLCNLQFLGVEGN  326 (727)
T ss_dssp             GGGTTCSEEECCSSCCC-CC---CSSTTSCTTCCCEECTTS
T ss_pred             cCCCCCCEEECCCCCCC-cc---ChhhhcCCCccEEeCCCC
Confidence            78899999999988421 21   223678999999999543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=94.59  E-value=0.05  Score=45.84  Aligned_cols=95  Identities=18%  Similarity=0.178  Sum_probs=58.0

Q ss_pred             CceeEEEEccccc----ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccc-cC
Q 013265          225 PNLLSFEYSGPIL----PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYL-HD  299 (446)
Q Consensus       225 p~L~~l~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~-~~  299 (446)
                      ++|+.|++.+..+    +..+.++++|+.+++..+.+.....   ..+..+++|+.|+|.+..+.         .++ ..
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~---~~~~~l~~L~~L~L~~N~l~---------~l~~~~  100 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPT---GVFDKLTQLTQLDLNDNHLK---------SIPRGA  100 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT---TTTTTCTTCCEEECCSSCCC---------CCCTTT
T ss_pred             CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccCh---hHhCCcchhhEEECCCCccc---------eeCHHH
Confidence            5666666665532    3346678888888887664433222   44567888999998874321         122 23


Q ss_pred             CCCCCcccEEEEEecCC---CCCHHHHHHHHhhCC
Q 013265          300 IPEMCNLKHLEIIGTPK---VNDLIFCIALLEAAP  331 (446)
Q Consensus       300 ~~~~~~L~~L~L~~~~~---~~~~~~l~~ll~~~p  331 (446)
                      +..+++|++|.|..+.-   -.++..+...++.-+
T Consensus       101 ~~~l~~L~~L~L~~N~~~c~~~~~~~l~~~~~~~~  135 (174)
T 2r9u_A          101 FDNLKSLTHIYLYNNPWDCECRDIMYLRNWVADHT  135 (174)
T ss_dssp             TTTCTTCSEEECCSSCBCTTBGGGHHHHHHHHHCG
T ss_pred             hccccCCCEEEeCCCCcccccccHHHHHHHHHhcc
Confidence            56678889988888751   123455555555443

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=92.63  E-value=0.17  Score=48.59  Aligned_cols=138  Identities=14%  Similarity=0.083  Sum_probs=66.6

Q ss_pred             CceeEEEEccccc---ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCC
Q 013265          225 PNLLSFEYSGPIL---PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIP  301 (446)
Q Consensus       225 p~L~~l~~~~~~~---~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~  301 (446)
                      ++|+.+.+.....   ...+.+++.++.+........   .   .....+.+|+.+.+....        . ..-...+.
T Consensus       253 ~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~---~---~~F~~~~~L~~i~l~~~i--------~-~I~~~aF~  317 (394)
T 4fs7_A          253 TDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVP---E---KTFYGCSSLTEVKLLDSV--------K-FIGEEAFE  317 (394)
T ss_dssp             SSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEEC---T---TTTTTCTTCCEEEECTTC--------C-EECTTTTT
T ss_pred             ccceeEEcCCCcceeeccccccccccceeccCceeec---c---cccccccccccccccccc--------c-eechhhhc
Confidence            4455555443311   123445555655554332111   1   334567788888876510        0 01123455


Q ss_pred             CCCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEEecccccccccccccccCCCCccccccCCCcEEEEEeeecCc
Q 013265          302 EMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTIKDQPYLSFTELRSIRVVELLGFVGHT  381 (446)
Q Consensus       302 ~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~p~c~~~~~~~l~~L~~v~i~~~~g~~  381 (446)
                      .+.+|+.+.|...-.  .+.  ..-+.+|.+|+++.+.          ..+..+..   ..|..|.+|+.|.+-.-   .
T Consensus       318 ~c~~L~~i~lp~~v~--~I~--~~aF~~c~~L~~i~lp----------~~l~~I~~---~aF~~C~~L~~i~lp~~---~  377 (394)
T 4fs7_A          318 SCTSLVSIDLPYLVE--EIG--KRSFRGCTSLSNINFP----------LSLRKIGA---NAFQGCINLKKVELPKR---L  377 (394)
T ss_dssp             TCTTCCEECCCTTCC--EEC--TTTTTTCTTCCEECCC----------TTCCEECT---TTBTTCTTCCEEEEEGG---G
T ss_pred             CCCCCCEEEeCCccc--EEh--HHhccCCCCCCEEEEC----------ccccEehH---HHhhCCCCCCEEEECCC---C
Confidence            677888887743311  000  1125778888888772          11111111   11224578888887531   1


Q ss_pred             chHHHHHHHHhcCccccce
Q 013265          382 ADFELVMYLIFSAKLLEKI  400 (446)
Q Consensus       382 ~e~~~~~~ll~~a~~Le~l  400 (446)
                      ..+   ++-..+++.|+.+
T Consensus       378 ~~~---~~~F~~c~~L~~I  393 (394)
T 4fs7_A          378 EQY---RYDFEDTTKFKWI  393 (394)
T ss_dssp             GGG---GGGBCTTCEEEEE
T ss_pred             EEh---hheecCCCCCcEE
Confidence            111   2224677777665

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=91.74  E-value=0.11  Score=43.31  Aligned_cols=55  Identities=16%  Similarity=0.059  Sum_probs=27.9

Q ss_pred             CceeEEEEccccc----ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeec
Q 013265          225 PNLLSFEYSGPIL----PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTC  282 (446)
Q Consensus       225 p~L~~l~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~  282 (446)
                      ++|++|++.+..+    +..+.++++|+.+++..+.+.....   ..+..+++|+.|.|.+.
T Consensus        54 ~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~L~~N  112 (170)
T 3g39_A           54 TQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPR---GAFDNLKSLTHIWLLNN  112 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT---TTTTTCTTCCEEECCSS
T ss_pred             ccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCH---HHhcCCCCCCEEEeCCC
Confidence            4455555544422    1223456666666665543322222   34556666777776664

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=89.80  E-value=0.18  Score=42.29  Aligned_cols=39  Identities=15%  Similarity=0.075  Sum_probs=21.3

Q ss_pred             cCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeec
Q 013265          241 FRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTC  282 (446)
Q Consensus       241 ~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~  282 (446)
                      +.++++|+.+++..+.+.....   ..+..+++|+.|.|.+.
T Consensus        77 ~~~l~~L~~L~L~~N~l~~l~~---~~~~~l~~L~~L~L~~N  115 (174)
T 2r9u_A           77 FDKLTQLTQLDLNDNHLKSIPR---GAFDNLKSLTHIYLYNN  115 (174)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCT---TTTTTCTTCSEEECCSS
T ss_pred             hCCcchhhEEECCCCccceeCH---HHhccccCCCEEEeCCC
Confidence            3456666666665543332222   33556667777777664

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=89.64  E-value=0.17  Score=45.80  Aligned_cols=86  Identities=20%  Similarity=0.237  Sum_probs=48.6

Q ss_pred             CCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEEecCCCC----
Q 013265          243 NVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTPKVN----  318 (446)
Q Consensus       243 ~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~----  318 (446)
                      ++|+|+.++++.+.+.. ...+..++..+++|+.|.|++..+..    ..  . ...+..+ +|++|.|.++.-..    
T Consensus       168 ~l~~L~~L~Ls~N~l~~-l~~l~~~~~~l~~L~~L~Ls~N~i~~----~~--~-l~~l~~l-~L~~L~L~~Npl~~~~~~  238 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYR-LDDMSSIVQKAPNLKILNLSGNELKS----ER--E-LDKIKGL-KLEELWLDGNSLCDTFRD  238 (267)
T ss_dssp             HCTTCCEEECTTSCCCC-CGGGTTHHHHSTTCCEEECTTSCCCS----GG--G-GGGGTTS-CCSEEECTTSTTGGGCSS
T ss_pred             hCCCCCEEECCCCCCCC-CccchhHHhhCCCCCEEECCCCccCC----ch--h-hhhcccC-CcceEEccCCcCccccCc
Confidence            45666666665543221 11222556678888888888743311    10  1 1122233 88888888775211    


Q ss_pred             CHHHHHHHHhhCCCceEEE
Q 013265          319 DLIFCIALLEAAPSLYKFS  337 (446)
Q Consensus       319 ~~~~l~~ll~~~p~L~~L~  337 (446)
                      .......++..+|+|+.|+
T Consensus       239 ~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          239 QSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHHHHHHHCTTCCEES
T ss_pred             chhHHHHHHHHCcccCeEC
Confidence            1123446788899998885

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=88.39  E-value=0.67  Score=43.33  Aligned_cols=76  Identities=18%  Similarity=0.196  Sum_probs=45.0

Q ss_pred             ccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhccccccc-CCCCCCcccEEEEEecC--C
Q 013265          240 SFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLH-DIPEMCNLKHLEIIGTP--K  316 (446)
Q Consensus       240 ~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~-~~~~~~~L~~L~L~~~~--~  316 (446)
                      .+.++++|+.+++..+.+.....   ..+..+++|+.|+|++..+.         .++. .+..+ .|+.|.|..+.  .
T Consensus        51 ~~~~l~~L~~L~l~~N~l~~~~~---~~~~~l~~L~~L~l~~N~l~---------~~~~~~~~~~-~L~~l~l~~N~~~c  117 (347)
T 2ifg_A           51 DLRGLGELRNLTIVKSGLRFVAP---DAFHFTPRLSRLNLSFNALE---------SLSWKTVQGL-SLQELVLSGNPLHC  117 (347)
T ss_dssp             GSCSCCCCSEEECCSSCCCEECT---TGGGSCSCCCEEECCSSCCS---------CCCSTTTCSC-CCCEEECCSSCCCC
T ss_pred             HhccccCCCEEECCCCccceeCH---HHhcCCcCCCEEeCCCCccc---------eeCHHHcccC-CceEEEeeCCCccC
Confidence            46677888888887664443333   45677888888888874321         1121 12222 38888888775  2


Q ss_pred             CCCHHHHHHHHh
Q 013265          317 VNDLIFCIALLE  328 (446)
Q Consensus       317 ~~~~~~l~~ll~  328 (446)
                      ...+.++...++
T Consensus       118 ~c~l~~~~~~~~  129 (347)
T 2ifg_A          118 SCALRWLQRWEE  129 (347)
T ss_dssp             CGGGHHHHHHHH
T ss_pred             CCccHHHHHHHH
Confidence            334455555554

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=82.77  E-value=0.57  Score=44.83  Aligned_cols=99  Identities=12%  Similarity=0.123  Sum_probs=56.2

Q ss_pred             CCceeEEEEccccc-ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCC
Q 013265          224 APNLLSFEYSGPIL-PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPE  302 (446)
Q Consensus       224 ~p~L~~l~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~  302 (446)
                      +++++.+.+..... ...+.++.+|+++.+... +.....   ..+..+.+|+.+.|....        . ..-...+..
T Consensus       275 ~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~~-i~~I~~---~aF~~c~~L~~i~lp~~v--------~-~I~~~aF~~  341 (394)
T 4fs7_A          275 CSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLDS-VKFIGE---EAFESCTSLVSIDLPYLV--------E-EIGKRSFRG  341 (394)
T ss_dssp             CTTCCEEEECSSEECTTTTTTCTTCCEEEECTT-CCEECT---TTTTTCTTCCEECCCTTC--------C-EECTTTTTT
T ss_pred             ccccceeccCceeeccccccccccccccccccc-cceech---hhhcCCCCCCEEEeCCcc--------c-EEhHHhccC
Confidence            35555555443322 234567788888888543 222222   445678889988885410        1 011234567


Q ss_pred             CCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEE
Q 013265          303 MCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLK  339 (446)
Q Consensus       303 ~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~  339 (446)
                      +.+|+.+.+...-.  .+.  ...+.+|++|+++++.
T Consensus       342 c~~L~~i~lp~~l~--~I~--~~aF~~C~~L~~i~lp  374 (394)
T 4fs7_A          342 CTSLSNINFPLSLR--KIG--ANAFQGCINLKKVELP  374 (394)
T ss_dssp             CTTCCEECCCTTCC--EEC--TTTBTTCTTCCEEEEE
T ss_pred             CCCCCEEEECcccc--Eeh--HHHhhCCCCCCEEEEC
Confidence            78888887754321  100  1136889999999883

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=81.04  E-value=1.3  Score=42.27  Aligned_cols=81  Identities=11%  Similarity=0.051  Sum_probs=42.0

Q ss_pred             ccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEEecCCCCC
Q 013265          240 SFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTPKVND  319 (446)
Q Consensus       240 ~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~  319 (446)
                      .+.++.+|+++.+... +.....   ..+..|.+|+.+.|...--       .  .-...+..+.+|+.+.+....    
T Consensus       306 aF~~c~~L~~i~lp~~-v~~I~~---~aF~~C~~L~~i~ip~sv~-------~--I~~~aF~~C~~L~~i~~~~~~----  368 (394)
T 4gt6_A          306 VFAGCISLKSIDIPEG-ITQILD---DAFAGCEQLERIAIPSSVT-------K--IPESAFSNCTALNNIEYSGSR----  368 (394)
T ss_dssp             TTTTCTTCCEEECCTT-CCEECT---TTTTTCTTCCEEEECTTCC-------B--CCGGGGTTCTTCCEEEESSCH----
T ss_pred             eecCCCCcCEEEeCCc-ccEehH---hHhhCCCCCCEEEECcccC-------E--EhHhHhhCCCCCCEEEECCce----
Confidence            4567777888777432 111112   4456778888888754100       0  112245567888888776541    


Q ss_pred             HHHHHHHHhhCCCceEEEEE
Q 013265          320 LIFCIALLEAAPSLYKFSLK  339 (446)
Q Consensus       320 ~~~l~~ll~~~p~L~~L~l~  339 (446)
                        ....-+..|.+|+.+.+.
T Consensus       369 --~~~~~~~~~~~L~~i~i~  386 (394)
T 4gt6_A          369 --SQWNAISTDSGLQNLPVA  386 (394)
T ss_dssp             --HHHHTCBCCCCC------
T ss_pred             --eehhhhhccCCCCEEEeC
Confidence              112335668888888773

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	446
d1nexb1	100	a.158.1.1 (B:270-369) Cdc4 F-box and linker domain	2e-06
d2ovrb1	102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	1e-05
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	1e-04
d1p22a1	118	a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b	3e-04

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.3 bits (104), Expect = 2e-06
 Identities = 20/95 (21%), Positives = 36/95 (37%), Gaps = 16/95 (16%)

Query: 6  DHINELPDDILVNILSRLTMKEAVRTSIISSRWRY-------LWR------GFSGCLNFD 52
          D I  LP +I + I + L  ++ + +  +S  W         LW+       F     F+
Sbjct: 4  DLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISENFVSPKGFN 63

Query: 53 DPFTMANSKWPHLNLKSG--PINVERHKFV-NWVN 84
                + K+P L+ +       +E    + NW N
Sbjct: 64 SLNLKLSQKYPKLSQQDRLRLSFLENIFILKNWYN 98

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (97), Expect = 1e-05
 Identities = 11/36 (30%), Positives = 20/36 (55%)

Query: 6  DHINELPDDILVNILSRLTMKEAVRTSIISSRWRYL 41
          D I+ LP ++ + +LS L  K+ ++ +     WR L
Sbjct: 17 DFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL 52

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (86), Expect = 1e-04
 Identities = 12/33 (36%), Positives = 20/33 (60%)

Query: 9  NELPDDILVNILSRLTMKEAVRTSIISSRWRYL 41
          + LPD++L+ I S L + E ++ S +  RW  L
Sbjct: 2  DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRL 34

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (88), Expect = 3e-04
 Identities = 16/61 (26%), Positives = 20/61 (32%), Gaps = 10/61 (16%)

Query: 6  DHINELP----DDILVNILSRLTMKEAVRTSIISSRWR------YLWRGFSGCLNFDDPF 55
          D I  LP    D I  NILS L  K      ++   W        LW+     +   D  
Sbjct: 9  DFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRTDSL 68

Query: 56 T 56
           
Sbjct: 69 W 69

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	446
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.13
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	98.99
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.89
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.66
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.58
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.3
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.19
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.15
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.11
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.08
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.07
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.06
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.01
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.91
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	97.88
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.86
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	97.73
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	97.67
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	97.63
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	97.56
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	97.54
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	97.49
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	97.4
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.29
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	97.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	96.87
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.85
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	96.65
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	96.64
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.56
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	96.56
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	96.51
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	96.44
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	96.35
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	96.06
d2ifga3	156	High affinity nerve growth factor receptor, N-term	95.95
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	95.94
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	95.88
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	95.87
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	94.41
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	93.7
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	91.05
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	89.89
d2ifga3	156	High affinity nerve growth factor receptor, N-term	88.35

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=4.9e-12  Score=116.00  Aligned_cols=82  Identities=16%  Similarity=0.156  Sum_probs=57.4

Q ss_pred             ccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCC-ceeEeCCcCccceEEeeccCCCCeEE-----EECCc
Q 013265          153 SFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLT-SLKVSGPSLKLKHLKLNKLDNLKDLQ-----LHAPN  226 (446)
Q Consensus       153 ~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~-~~~i~~~~~~L~~L~i~~~~~l~~~~-----i~~p~  226 (446)
                      ...+|++|+|+++.++++.+..+++. ||+|++|.+.+|.... .+..-..+++|++|.+++|..+.+..     -.+|+
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~-c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~  122 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQ-CSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR  122 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTT-BCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTT
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHh-CCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHh
Confidence            45689999999999998889999999 9999999999985321 12222344788888888887554321     13466


Q ss_pred             eeEEEEccc
Q 013265          227 LLSFEYSGP  235 (446)
Q Consensus       227 L~~l~~~~~  235 (446)
                      |++|++.++
T Consensus       123 L~~L~ls~c  131 (284)
T d2astb2         123 LDELNLSWC  131 (284)
T ss_dssp             CCEEECCCC
T ss_pred             ccccccccc
Confidence            666665554

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=1.4e-10  Score=71.93  Aligned_cols=36  Identities=33%  Similarity=0.590  Sum_probs=33.5

Q ss_pred             CCCCChHHHHHHHhCCChhHHHHHhhccchhhhhcc
Q 013265            8 INELPDDILVNILSRLTMKEAVRTSIISSRWRYLWR   43 (446)
Q Consensus         8 is~LPd~iL~~ILs~Lp~kd~~rts~lSkrWr~lw~   43 (446)
                      ++.||+||+.+||++||.+|.++++.|||+|+++-.
T Consensus         1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~   36 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS   36 (41)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHT
T ss_pred             CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence            478999999999999999999999999999998754

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=1.3e-10  Score=106.38  Aligned_cols=180  Identities=14%  Similarity=0.135  Sum_probs=97.5

Q ss_pred             CccceEEeeccCC----CCeEEEECCceeEEEEccccc----ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCce
Q 013265          204 LKLKHLKLNKLDN----LKDLQLHAPNLLSFEYSGPIL----PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLH  275 (446)
Q Consensus       204 ~~L~~L~i~~~~~----l~~~~i~~p~L~~l~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~  275 (446)
                      .+|++|++++|..    +..+.-.+|+|++|.+.++..    ...+..+++|+.+++..+. ......+..+..++++|+
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~-~itd~~l~~l~~~~~~L~  124 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS-GFSEFALQTLLSSCSRLD  124 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCB-SCCHHHHHHHHHHCTTCC
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccc-cccccccchhhHHHHhcc
Confidence            4677777776641    112222457777777777632    2335567788888886641 122223335667788888


Q ss_pred             EEEEeecccccccchhcccccccC-CCCCCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEEeccccccccccccc
Q 013265          276 TLKLDTCHLLIGDSEYRAGRYLHD-IPEMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKT  354 (446)
Q Consensus       276 ~L~L~~~~~~~~~~~~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~  354 (446)
                      +|++++|.....      ..+... ...+++|++|.+.++.......++..+.++||+|++|++..+   ....+..+..
T Consensus       125 ~L~ls~c~~~~~------~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~---~~itd~~~~~  195 (284)
T d2astb2         125 ELNLSWCFDFTE------KHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDS---VMLKNDCFQE  195 (284)
T ss_dssp             EEECCCCTTCCH------HHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTC---TTCCGGGGGG
T ss_pred             cccccccccccc------ccchhhhcccccccchhhhcccccccccccccccccccccccccccccc---cCCCchhhhh
Confidence            888877532110      111111 123467888888766432333467777888888888887432   2111222222


Q ss_pred             ccCCCCccccccCCCcEEEEEeeecCcchHHHHHHHHhcCccccceEEec
Q 013265          355 IKDQPYLSFTELRSIRVVELLGFVGHTADFELVMYLIFSAKLLEKIIIDP  404 (446)
Q Consensus       355 ~p~c~~~~~~~l~~L~~v~i~~~~g~~~e~~~~~~ll~~a~~Le~l~i~~  404 (446)
                      +.+|        .+|+++.+.++.+...+ .+..  +.+.+.|+.+.+..
T Consensus       196 l~~~--------~~L~~L~L~~C~~i~~~-~l~~--L~~~~~L~~L~l~~  234 (284)
T d2astb2         196 FFQL--------NYLQHLSLSRCYDIIPE-TLLE--LGEIPTLKTLQVFG  234 (284)
T ss_dssp             GGGC--------TTCCEEECTTCTTCCGG-GGGG--GGGCTTCCEEECTT
T ss_pred             hccc--------CcCCEEECCCCCCCChH-HHHH--HhcCCCCCEEeeeC
Confidence            2333        56777777665433221 1111  24567777776643

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=6.3e-09  Score=79.06  Aligned_cols=37  Identities=30%  Similarity=0.520  Sum_probs=35.7

Q ss_pred             CCcCCCCChHHHHHHHhCCChhHHHHHhhccchhhhh
Q 013265            5 GDHINELPDDILVNILSRLTMKEAVRTSIISSRWRYL   41 (446)
Q Consensus         5 ~D~is~LPd~iL~~ILs~Lp~kd~~rts~lSkrWr~l   41 (446)
                      .|.|+.||+||+.+||++|+.+|+++++.|||+|+.+
T Consensus        16 ~D~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l   52 (102)
T d2ovrb1          16 RDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL   52 (102)
T ss_dssp             CSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH
T ss_pred             cCChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            6999999999999999999999999999999999975

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.58  E-value=4.2e-09  Score=79.66  Aligned_cols=39  Identities=26%  Similarity=0.486  Sum_probs=36.3

Q ss_pred             CCcCCCCChHHHHHHHhCCChhHHHHHhhccchhhhhcc
Q 013265            5 GDHINELPDDILVNILSRLTMKEAVRTSIISSRWRYLWR   43 (446)
Q Consensus         5 ~D~is~LPd~iL~~ILs~Lp~kd~~rts~lSkrWr~lw~   43 (446)
                      .|.|+.||+||+.+||++|+.+|.++++.|||+|+++..
T Consensus         3 ~D~~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~   41 (100)
T d1nexb1           3 RDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIR   41 (100)
T ss_dssp             CCHHHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHH
T ss_pred             CCchhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence            689999999999999999999999999999999987543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=6.5e-07  Score=80.16  Aligned_cols=194  Identities=20%  Similarity=0.092  Sum_probs=109.2

Q ss_pred             ccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeEeCCcCccceEEeeccCCCCeEEEECCceeEEEEcc
Q 013265          155 RHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQLHAPNLLSFEYSG  234 (446)
Q Consensus       155 ~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~l~~~~i~~p~L~~l~~~~  234 (446)
                      ++|++|+|++..++.-. ...+.+ +++|++|.|.++. +..+.....+++|+.|.++++. +..+              
T Consensus        31 ~~l~~L~Ls~N~i~~l~-~~~f~~-l~~L~~L~L~~N~-l~~l~~~~~l~~L~~L~Ls~N~-l~~~--------------   92 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFS-LATLMP-YTRLTQLNLDRAE-LTKLQVDGTLPVLGTLDLSHNQ-LQSL--------------   92 (266)
T ss_dssp             TTCCEEECTTSCCSEEE-GGGGTT-CTTCCEEECTTSC-CCEEECCSCCTTCCEEECCSSC-CSSC--------------
T ss_pred             cCCCEEECcCCcCCCcC-HHHhhc-ccccccccccccc-cccccccccccccccccccccc-cccc--------------
Confidence            57999999987765311 123667 9999999999874 3344333445667777776654 2211              


Q ss_pred             cccccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEEec
Q 013265          235 PILPFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGT  314 (446)
Q Consensus       235 ~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~  314 (446)
                         +..+.++++|+.+++..+.......   .....+.+++.|.+....+.        ..-...+..+++|+.|.+..+
T Consensus        93 ---~~~~~~l~~L~~L~l~~~~~~~~~~---~~~~~l~~l~~L~l~~n~l~--------~l~~~~~~~l~~l~~l~l~~N  158 (266)
T d1p9ag_          93 ---PLLGQTLPALTVLDVSFNRLTSLPL---GALRGLGELQELYLKGNELK--------TLPPGLLTPTPKLEKLSLANN  158 (266)
T ss_dssp             ---CCCTTTCTTCCEEECCSSCCCCCCS---STTTTCTTCCEEECTTSCCC--------CCCTTTTTTCTTCCEEECTTS
T ss_pred             ---ccccccccccccccccccccceeec---cccccccccccccccccccc--------eeccccccccccchhcccccc
Confidence               1224455566666665432211111   33455667777776653221        011223345677777777766


Q ss_pred             CCCCCHHHHHHHHhhCCCceEEEEEEecccccccccccccccCCCCccccccCCCcEEEEEe--eecCcchHHHHHHHHh
Q 013265          315 PKVNDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTIKDQPYLSFTELRSIRVVELLG--FVGHTADFELVMYLIF  392 (446)
Q Consensus       315 ~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~p~c~~~~~~~l~~L~~v~i~~--~~g~~~e~~~~~~ll~  392 (446)
                      .-..-   ....+...++|+.|+|+..         .+..+|+-..    .+.+|+.+.+.|  |..++.-..|.+++-+
T Consensus       159 ~l~~~---~~~~~~~l~~L~~L~Ls~N---------~L~~lp~~~~----~~~~L~~L~L~~Np~~CdC~~~~l~~wl~~  222 (266)
T d1p9ag_         159 NLTEL---PAGLLNGLENLDTLLLQEN---------SLYTIPKGFF----GSHLLPFAFLHGNPWLCNCEILYFRRWLQD  222 (266)
T ss_dssp             CCSCC---CTTTTTTCTTCCEEECCSS---------CCCCCCTTTT----TTCCCSEEECCSCCBCCSGGGHHHHHHHHH
T ss_pred             ccccc---CccccccccccceeecccC---------CCcccChhHC----CCCCCCEEEecCCCCCCCcchHHHHHHHHh
Confidence            41111   0123567788888888422         2333443221    347899999987  5556566677777766


Q ss_pred             cCcc
Q 013265          393 SAKL  396 (446)
Q Consensus       393 ~a~~  396 (446)
                      ++..
T Consensus       223 ~~~~  226 (266)
T d1p9ag_         223 NAEN  226 (266)
T ss_dssp             TGGG
T ss_pred             cccc
Confidence            5543

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=1.7e-07  Score=72.84  Aligned_cols=37  Identities=35%  Similarity=0.564  Sum_probs=34.6

Q ss_pred             CCcCCCCC----hHHHHHHHhCCChhHHHHHhhccchhhhh
Q 013265            5 GDHINELP----DDILVNILSRLTMKEAVRTSIISSRWRYL   41 (446)
Q Consensus         5 ~D~is~LP----d~iL~~ILs~Lp~kd~~rts~lSkrWr~l   41 (446)
                      .|.|+.||    |||+.+||++|+.+|.++++.|||+|+++
T Consensus         8 ~D~i~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l   48 (118)
T d1p22a1           8 RDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRV   48 (118)
T ss_dssp             CCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHH
T ss_pred             ccHHHHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            58899999    59999999999999999999999999865

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.15  E-value=4.2e-07  Score=84.63  Aligned_cols=152  Identities=14%  Similarity=-0.016  Sum_probs=94.7

Q ss_pred             CCCCcceEEecccchh-hhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEEecC-CCCCH
Q 013265          243 NVPNLVDASFWGCFSA-YIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTP-KVNDL  320 (446)
Q Consensus       243 ~~~~L~~l~l~~~~~~-~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~-~~~~~  320 (446)
                      ..+.|+.+.++.+... .....+...+...++++.|.+..+.+...  .. ...+...+..+++|++|+|..+. .....
T Consensus       156 ~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~--g~-~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~  232 (344)
T d2ca6a1         156 NAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPE--GI-EHLLLEGLAYCQELKVLDLQDNTFTHLGS  232 (344)
T ss_dssp             TCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHH--HH-HHHHHTTGGGCTTCCEEECCSSCCHHHHH
T ss_pred             cCcccceeecccccccccccccccchhhhhhhhccccccccccccc--cc-ccchhhhhcchhhhccccccccccccccc
Confidence            4566777777554322 22234556778889999999988543211  00 01123346678999999998764 22223


Q ss_pred             HHHHHHHhhCCCceEEEEEEecccccccccc--c-ccccCCCCccccccCCCcEEEEEeee-cCcchHHHHHHHHhcCcc
Q 013265          321 IFCIALLEAAPSLYKFSLKLVSQYDYESYES--V-KTIKDQPYLSFTELRSIRVVELLGFV-GHTADFELVMYLIFSAKL  396 (446)
Q Consensus       321 ~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~--~-~~~p~c~~~~~~~l~~L~~v~i~~~~-g~~~e~~~~~~ll~~a~~  396 (446)
                      ..+...+..+|+|++|.+.   ++...+.+.  + ..+..+..      ..|+++.+.+-. +.+.-..+++.+-.+.+.
T Consensus       233 ~~L~~~l~~~~~L~~L~Ls---~n~i~~~g~~~l~~~l~~~~~------~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~  303 (344)
T d2ca6a1         233 SALAIALKSWPNLRELGLN---DCLLSARGAAAVVDAFSKLEN------IGLQTLRLQYNEIELDAVRTLKTVIDEKMPD  303 (344)
T ss_dssp             HHHHHHGGGCTTCCEEECT---TCCCCHHHHHHHHHHHHTCSS------CCCCEEECCSSCCBHHHHHHHHHHHHHHCTT
T ss_pred             ccccccccccccchhhhhh---cCccCchhhHHHHHHhhhccC------CCCCEEECCCCcCChHHHHHHHHHHHccCCC
Confidence            4577788999999999984   333332221  1 12334433      679999998654 333444667776668899


Q ss_pred             ccceEEecCC
Q 013265          397 LEKIIIDPCP  406 (446)
Q Consensus       397 Le~l~i~~~~  406 (446)
                      |+++.+....
T Consensus       304 L~~L~l~~N~  313 (344)
T d2ca6a1         304 LLFLELNGNR  313 (344)
T ss_dssp             CCEEECTTSB
T ss_pred             CCEEECCCCc
Confidence            9999886544

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.11  E-value=1.6e-06  Score=75.42  Aligned_cols=60  Identities=17%  Similarity=0.138  Sum_probs=30.1

Q ss_pred             ccccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeEeCCcCccceEEeeccC
Q 013265          151 YSSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLD  215 (446)
Q Consensus       151 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~  215 (446)
                      ...+++|++|+|++..+++-.  . +.. +++|+.|.+.++... .+.--..+++|+.+.+.++.
T Consensus        59 l~~l~~L~~L~ls~n~i~~~~--~-l~~-l~~l~~l~~~~n~~~-~i~~l~~l~~L~~l~l~~~~  118 (227)
T d1h6ua2          59 VQYLNNLIGLELKDNQITDLA--P-LKN-LTKITELELSGNPLK-NVSAIAGLQSIKTLDLTSTQ  118 (227)
T ss_dssp             GGGCTTCCEEECCSSCCCCCG--G-GTT-CCSCCEEECCSCCCS-CCGGGTTCTTCCEEECTTSC
T ss_pred             HhcCCCCcEeecCCceeeccc--c-ccc-ccccccccccccccc-cccccccccccccccccccc
Confidence            345666666666666554321  1 455 666666666655332 12111123455555554443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.08  E-value=9.6e-07  Score=76.95  Aligned_cols=185  Identities=17%  Similarity=0.203  Sum_probs=119.4

Q ss_pred             cccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeEeCCcCccceEEeeccCCCCeEE--EECCceeE
Q 013265          152 SSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQ--LHAPNLLS  229 (446)
Q Consensus       152 ~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~l~~~~--i~~p~L~~  229 (446)
                      ..+.+|+.|.+.++.+++  +.. +.. +|+|++|++.++.......+ ..+++|+.+.+.++. +..+.  -..++|++
T Consensus        38 ~~l~~L~~L~l~~~~i~~--l~~-l~~-l~~L~~L~ls~n~i~~~~~l-~~l~~l~~l~~~~n~-~~~i~~l~~l~~L~~  111 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGVTT--IEG-VQY-LNNLIGLELKDNQITDLAPL-KNLTKITELELSGNP-LKNVSAIAGLQSIKT  111 (227)
T ss_dssp             HHHHTCCEEECTTSCCCC--CTT-GGG-CTTCCEEECCSSCCCCCGGG-TTCCSCCEEECCSCC-CSCCGGGTTCTTCCE
T ss_pred             HHcCCcCEEECCCCCCCc--chh-Hhc-CCCCcEeecCCceeeccccc-ccccccccccccccc-ccccccccccccccc
Confidence            357888999998887764  322 677 99999999998864332222 344789999998775 33332  14588999


Q ss_pred             EEEcccccc--cccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCccc
Q 013265          230 FEYSGPILP--FSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLK  307 (446)
Q Consensus       230 l~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~  307 (446)
                      +.+.++...  ..+...+.+..+.+..+.....     ..+..+++++.|.+.++.+.         . ...+..+++|+
T Consensus       112 l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~L~~L~l~~n~~~---------~-~~~l~~l~~L~  176 (227)
T d1h6ua2         112 LDLTSTQITDVTPLAGLSNLQVLYLDLNQITNI-----SPLAGLTNLQYLSIGNAQVS---------D-LTPLANLSKLT  176 (227)
T ss_dssp             EECTTSCCCCCGGGTTCTTCCEEECCSSCCCCC-----GGGGGCTTCCEEECCSSCCC---------C-CGGGTTCTTCC
T ss_pred             cccccccccccchhccccchhhhhchhhhhchh-----hhhccccccccccccccccc---------c-chhhcccccce
Confidence            998877432  2345677788888765532211     23467889999999874221         1 11256788999


Q ss_pred             EEEEEecCCCCCHHHHHHHHhhCCCceEEEEEEecccccccccccccccCCCCccccccCCCcEEEEEe
Q 013265          308 HLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTIKDQPYLSFTELRSIRVVELLG  376 (446)
Q Consensus       308 ~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~p~c~~~~~~~l~~L~~v~i~~  376 (446)
                      +|+++.+. ..++.    -+.++|+|+.|++..   +.      +..++...     ++.+|+++.+.+
T Consensus       177 ~L~Ls~n~-l~~l~----~l~~l~~L~~L~Ls~---N~------lt~i~~l~-----~l~~L~~L~lsn  226 (227)
T d1h6ua2         177 TLKADDNK-ISDIS----PLASLPNLIEVHLKN---NQ------ISDVSPLA-----NTSNLFIVTLTN  226 (227)
T ss_dssp             EEECCSSC-CCCCG----GGGGCTTCCEEECTT---SC------CCBCGGGT-----TCTTCCEEEEEE
T ss_pred             ecccCCCc-cCCCh----hhcCCCCCCEEECcC---Cc------CCCCcccc-----cCCCCCEEEeeC
Confidence            99998874 22322    267899999999832   22      22222211     247899988864

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.07  E-value=9.3e-07  Score=75.42  Aligned_cols=36  Identities=14%  Similarity=0.133  Sum_probs=17.3

Q ss_pred             ccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccC
Q 013265          153 SFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESS  192 (446)
Q Consensus       153 ~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~  192 (446)
                      .+++|++|+|+++.+++-.  . +.+ +|+|+.|.+.++.
T Consensus        60 ~l~nL~~L~Ls~N~l~~~~--~-l~~-l~~L~~L~l~~n~   95 (199)
T d2omxa2          60 YLNNLTQINFSNNQLTDIT--P-LKN-LTKLVDILMNNNQ   95 (199)
T ss_dssp             GCTTCCEEECCSSCCCCCG--G-GTT-CTTCCEEECCSSC
T ss_pred             cCCCcCcCccccccccCcc--c-ccC-Ccccccccccccc
Confidence            4555555555555444321  1 344 5555555555443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.06  E-value=9.5e-07  Score=76.07  Aligned_cols=37  Identities=22%  Similarity=0.119  Sum_probs=20.2

Q ss_pred             cccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccC
Q 013265          152 SSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESS  192 (446)
Q Consensus       152 ~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~  192 (446)
                      ..+++|++|+|++..+++-.  . ++. +++|+.|++.++.
T Consensus        65 ~~l~~L~~L~L~~n~i~~l~--~-~~~-l~~L~~L~l~~n~  101 (210)
T d1h6ta2          65 QYLPNVTKLFLNGNKLTDIK--P-LAN-LKNLGWLFLDENK  101 (210)
T ss_dssp             GGCTTCCEEECCSSCCCCCG--G-GTT-CTTCCEEECCSSC
T ss_pred             hhCCCCCEEeCCCccccCcc--c-ccc-Ccccccccccccc
Confidence            35566666666665554311  1 344 6666666666553

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=1.5e-06  Score=71.54  Aligned_cols=65  Identities=18%  Similarity=0.225  Sum_probs=34.6

Q ss_pred             hhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEE
Q 013265          267 HSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSL  338 (446)
Q Consensus       267 ~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l  338 (446)
                      +...+++++.|.+.++.+..    .   .....+..+++|++|++.++.-......-..++..+|+|+.|+-
T Consensus        82 ~~~~l~~L~~L~L~~N~i~~----~---~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          82 LDQALPDLTELILTNNSLVE----L---GDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             HHHHCTTCCEEECCSCCCCC----G---GGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred             ccccccccccceeccccccc----c---ccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCC
Confidence            34556677777776643211    0   00123445677777777776411111112345777888888764

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.91  E-value=4.7e-06  Score=71.54  Aligned_cols=161  Identities=17%  Similarity=0.153  Sum_probs=108.0

Q ss_pred             ccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeEeCCcCccceEEeeccCCCCeEE--EECCceeEE
Q 013265          153 SFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQ--LHAPNLLSF  230 (446)
Q Consensus       153 ~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~l~~~~--i~~p~L~~l  230 (446)
                      .+.+|+.|.+.++.+++-  . -+.. +|+|++|++.++.... +.-...+++|+.|.+.++. +..+.  -..++|+.+
T Consensus        44 ~L~~L~~L~l~~~~i~~l--~-~l~~-l~~L~~L~L~~n~i~~-l~~~~~l~~L~~L~l~~n~-i~~l~~l~~l~~L~~L  117 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSV--Q-GIQY-LPNVTKLFLNGNKLTD-IKPLANLKNLGWLFLDENK-VKDLSSLKDLKKLKSL  117 (210)
T ss_dssp             HHHTCCEEECTTSCCCCC--T-TGGG-CTTCCEEECCSSCCCC-CGGGTTCTTCCEEECCSSC-CCCGGGGTTCTTCCEE
T ss_pred             HhcCccEEECcCCCCCCc--h-hHhh-CCCCCEEeCCCccccC-ccccccCcccccccccccc-cccccccccccccccc
Confidence            356777777777766542  1 1567 9999999999885332 2212345789999998876 55432  125899999


Q ss_pred             EEcccccc--cccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccE
Q 013265          231 EYSGPILP--FSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKH  308 (446)
Q Consensus       231 ~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  308 (446)
                      .+.++...  -.+.+++.++.+++..+....  .   .....+++|+.+.+.++.+       .  .+ ..+..+++|++
T Consensus       118 ~l~~~~~~~~~~l~~l~~l~~l~~~~n~l~~--~---~~~~~l~~L~~l~l~~n~l-------~--~i-~~l~~l~~L~~  182 (210)
T d1h6ta2         118 SLEHNGISDINGLVHLPQLESLYLGNNKITD--I---TVLSRLTKLDTLSLEDNQI-------S--DI-VPLAGLTKLQN  182 (210)
T ss_dssp             ECTTSCCCCCGGGGGCTTCCEEECCSSCCCC--C---GGGGGCTTCSEEECCSSCC-------C--CC-GGGTTCTTCCE
T ss_pred             ccccccccccccccccccccccccccccccc--c---ccccccccccccccccccc-------c--cc-ccccCCCCCCE
Confidence            98877432  246678889988887653221  1   3456789999999988422       1  11 12557889999


Q ss_pred             EEEEecCCCCCHHHHHHHHhhCCCceEEEEE
Q 013265          309 LEIIGTPKVNDLIFCIALLEAAPSLYKFSLK  339 (446)
Q Consensus       309 L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~  339 (446)
                      |++..+. ..++.    -+.++++|+.|+|.
T Consensus       183 L~Ls~N~-i~~l~----~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         183 LYLSKNH-ISDLR----ALAGLKNLDVLELF  208 (210)
T ss_dssp             EECCSSC-CCBCG----GGTTCTTCSEEEEE
T ss_pred             EECCCCC-CCCCh----hhcCCCCCCEEEcc
Confidence            9998874 22322    36889999999985

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=4.4e-06  Score=74.51  Aligned_cols=160  Identities=19%  Similarity=0.137  Sum_probs=101.8

Q ss_pred             cccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeEeCCcCccceEEeeccCCCCeEEE----ECCce
Q 013265          152 SSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQL----HAPNL  227 (446)
Q Consensus       152 ~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~l~~~~i----~~p~L  227 (446)
                      .++++|++|.|++..++.-  . .++. +|+|++|++.++............++|+.|.+.++. +..+..    ..+++
T Consensus        52 ~~l~~L~~L~L~~N~l~~l--~-~~~~-l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~l  126 (266)
T d1p9ag_          52 MPYTRLTQLNLDRAELTKL--Q-VDGT-LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGEL  126 (266)
T ss_dssp             TTCTTCCEEECTTSCCCEE--E-CCSC-CTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTC
T ss_pred             hcccccccccccccccccc--c-cccc-cccccccccccccccccccccccccccccccccccc-cceeecccccccccc
Confidence            4688999999998776632  1 1356 999999999988654443444455788999888776 222211    23677


Q ss_pred             eEEEEccccc----ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCC
Q 013265          228 LSFEYSGPIL----PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEM  303 (446)
Q Consensus       228 ~~l~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~  303 (446)
                      +.+.+.+...    +..+..++.++.+++..+.+.....   ..+..+++|+.|+|++..+         ..++..+..+
T Consensus       127 ~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~---~~~~~l~~L~~L~Ls~N~L---------~~lp~~~~~~  194 (266)
T d1p9ag_         127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPA---GLLNGLENLDTLLLQENSL---------YTIPKGFFGS  194 (266)
T ss_dssp             CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCT---TTTTTCTTCCEEECCSSCC---------CCCCTTTTTT
T ss_pred             ccccccccccceeccccccccccchhcccccccccccCc---cccccccccceeecccCCC---------cccChhHCCC
Confidence            7787776532    2334567788888887664433222   4556778888888887422         1234445566


Q ss_pred             CcccEEEEEecCC--CCCHHHHHHHHh
Q 013265          304 CNLKHLEIIGTPK--VNDLIFCIALLE  328 (446)
Q Consensus       304 ~~L~~L~L~~~~~--~~~~~~l~~ll~  328 (446)
                      ++|+.|.|.++.-  +.++.++...++
T Consensus       195 ~~L~~L~L~~Np~~CdC~~~~l~~wl~  221 (266)
T d1p9ag_         195 HLLPFAFLHGNPWLCNCEILYFRRWLQ  221 (266)
T ss_dssp             CCCSEEECCSCCBCCSGGGHHHHHHHH
T ss_pred             CCCCEEEecCCCCCCCcchHHHHHHHH
Confidence            7888888887752  233445555554

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.86  E-value=4.2e-06  Score=71.19  Aligned_cols=158  Identities=18%  Similarity=0.255  Sum_probs=108.4

Q ss_pred             ccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeEeCCcCccceEEeeccCCCCeEE-E-ECCceeEE
Q 013265          153 SFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQ-L-HAPNLLSF  230 (446)
Q Consensus       153 ~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~l~~~~-i-~~p~L~~l  230 (446)
                      .+++|++|.+.+..+++  +. -++. +++|+.|++.++.. ..+.--..+++|+.|.+.++. +..+. + ..++|+.+
T Consensus        38 ~l~~l~~L~l~~~~i~~--l~-~l~~-l~nL~~L~Ls~N~l-~~~~~l~~l~~L~~L~l~~n~-~~~~~~l~~l~~L~~L  111 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKS--ID-GVEY-LNNLTQINFSNNQL-TDITPLKNLTKLVDILMNNNQ-IADITPLANLTNLTGL  111 (199)
T ss_dssp             HHTTCCEEECTTSCCCC--CT-TGGG-CTTCCEEECCSSCC-CCCGGGTTCTTCCEEECCSSC-CCCCGGGTTCTTCSEE
T ss_pred             HhcCCCEEECCCCCCCC--cc-cccc-CCCcCcCccccccc-cCcccccCCcccccccccccc-cccccccccccccccc
Confidence            46778888888777664  11 1567 99999999999853 333212345889999999876 33321 1 45889999


Q ss_pred             EEcccccc--cccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccE
Q 013265          231 EYSGPILP--FSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKH  308 (446)
Q Consensus       231 ~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  308 (446)
                      .+.++...  ..+.++++|+.++++.+.....     ..+..+++++.|.+.++.+.         .+ ..+..+++|++
T Consensus       112 ~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~l~~~~~L~~L~l~~n~l~---------~l-~~l~~l~~L~~  176 (199)
T d2omxa2         112 TLFNNQITDIDPLKNLTNLNRLELSSNTISDI-----SALSGLTSLQQLNFSSNQVT---------DL-KPLANLTTLER  176 (199)
T ss_dssp             ECCSSCCCCCGGGTTCTTCSEEECCSSCCCCC-----GGGTTCTTCSEEECCSSCCC---------CC-GGGTTCTTCCE
T ss_pred             cccccccccccccchhhhhHHhhhhhhhhccc-----cccccccccccccccccccc---------CC-ccccCCCCCCE
Confidence            98877432  3467889999999987643221     34678899999999884321         11 23567899999


Q ss_pred             EEEEecCCCCCHHHHHHHHhhCCCceEE
Q 013265          309 LEIIGTPKVNDLIFCIALLEAAPSLYKF  336 (446)
Q Consensus       309 L~L~~~~~~~~~~~l~~ll~~~p~L~~L  336 (446)
                      |++..+. ..++.    .+.++++||+|
T Consensus       177 L~ls~N~-i~~i~----~l~~L~~L~~L  199 (199)
T d2omxa2         177 LDISSNK-VSDIS----VLAKLTNLESL  199 (199)
T ss_dssp             EECCSSC-CCCCG----GGGGCTTCSEE
T ss_pred             EECCCCC-CCCCc----cccCCCCCCcC
Confidence            9999884 22322    36789999986

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=9.3e-06  Score=73.02  Aligned_cols=208  Identities=14%  Similarity=0.063  Sum_probs=120.9

Q ss_pred             ccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCce-eEeCCcCccceEEeeccCCCCeEEE----ECCceeE
Q 013265          155 RHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSL-KVSGPSLKLKHLKLNKLDNLKDLQL----HAPNLLS  229 (446)
Q Consensus       155 ~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~-~i~~~~~~L~~L~i~~~~~l~~~~i----~~p~L~~  229 (446)
                      +++++|+|++..++.-. ...+.+ +++|+.|++.+....... ........++++.+.....+..+..    +.++|++
T Consensus        32 ~~~~~L~Ls~N~i~~i~-~~~f~~-l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~  109 (284)
T d1ozna_          32 AASQRIFLHGNRISHVP-AASFRA-CRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT  109 (284)
T ss_dssp             TTCSEEECTTSCCCEEC-TTTTTT-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred             CCCCEEECcCCcCCCCC-HHHhhc-cccccccccccccccccccccccccccccccccccccccccccchhhcccccCCE
Confidence            46788888877665311 123667 899999998876432211 1112235666666655444443321    2478888


Q ss_pred             EEEccccc----ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCc
Q 013265          230 FEYSGPIL----PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCN  305 (446)
Q Consensus       230 l~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (446)
                      |.+.+...    ...+...+.|+.+++....+.....   ..+..+++++.|++.++.+.        ...+..+..+++
T Consensus       110 L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~---~~f~~~~~L~~L~l~~N~l~--------~l~~~~f~~l~~  178 (284)
T d1ozna_         110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD---DTFRDLGNLTHLFLHGNRIS--------SVPERAFRGLHS  178 (284)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT---TTTTTCTTCCEEECCSSCCC--------EECTTTTTTCTT
T ss_pred             EecCCcccccccccccchhcccchhhhccccccccCh---hHhccccchhhcccccCccc--------ccchhhhccccc
Confidence            88877632    2345567788888887654433222   45677888999998874321        111345667888


Q ss_pred             ccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEEecccccccccccccccCCCCccccccCCCcEEEEEe--eecCcch
Q 013265          306 LKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLVSQYDYESYESVKTIKDQPYLSFTELRSIRVVELLG--FVGHTAD  383 (446)
Q Consensus       306 L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~~~~~p~c~~~~~~~l~~L~~v~i~~--~~g~~~e  383 (446)
                      |+.+.+..+.-.. +  ....+..+++|+.|++...   ...      ..+.   ..+..+.+|+++.+.|  +.++.+-
T Consensus       179 L~~l~l~~N~l~~-i--~~~~f~~l~~L~~L~l~~N---~i~------~~~~---~~~~~~~~L~~L~l~~N~l~C~C~~  243 (284)
T d1ozna_         179 LDRLLLHQNRVAH-V--HPHAFRDLGRLMTLYLFAN---NLS------ALPT---EALAPLRALQYLRLNDNPWVCDCRA  243 (284)
T ss_dssp             CCEEECCSSCCCE-E--CTTTTTTCTTCCEEECCSS---CCS------CCCH---HHHTTCTTCCEEECCSSCEECSGGG
T ss_pred             cchhhhhhccccc-c--ChhHhhhhhhccccccccc---ccc------cccc---cccccccccCEEEecCCCCCCCccc
Confidence            9999888774111 1  0123577899999988432   111      1110   0011237799999987  5666544


Q ss_pred             HHHHHHH
Q 013265          384 FELVMYL  390 (446)
Q Consensus       384 ~~~~~~l  390 (446)
                      ..+...+
T Consensus       244 ~~l~~~l  250 (284)
T d1ozna_         244 RPLWAWL  250 (284)
T ss_dssp             HHHHHHH
T ss_pred             hHHHHHH
Confidence            3443333

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.67  E-value=1.5e-05  Score=74.46  Aligned_cols=159  Identities=15%  Similarity=0.122  Sum_probs=66.3

Q ss_pred             cccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeEeCCcCccceEEeeccCCCCeEE--EECCceeEEE
Q 013265          154 FRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQ--LHAPNLLSFE  231 (446)
Q Consensus       154 ~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~l~~~~--i~~p~L~~l~  231 (446)
                      +++++.|.+.+..+++-.   -... +++|++|.+.++.... +.....+++|+.|.+.++. +..+.  -..++|++++
T Consensus       196 l~~~~~l~l~~n~i~~~~---~~~~-~~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~L~~L~  269 (384)
T d2omza2         196 LTNLESLIATNNQISDIT---PLGI-LTNLDELSLNGNQLKD-IGTLASLTNLTDLDLANNQ-ISNLAPLSGLTKLTELK  269 (384)
T ss_dssp             CTTCSEEECCSSCCCCCG---GGGG-CTTCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSC-CCCCGGGTTCTTCSEEE
T ss_pred             ccccceeeccCCccCCCC---cccc-cCCCCEEECCCCCCCC-cchhhcccccchhccccCc-cCCCCcccccccCCEee
Confidence            445555555554443321   0233 5666666665553221 1111122455555555543 22211  1235555555


Q ss_pred             Ecccccc--cccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEE
Q 013265          232 YSGPILP--FSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHL  309 (446)
Q Consensus       232 ~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L  309 (446)
                      +.+....  ..+.+++.++.+.+..+.....     ..+..+++++.|.++++.+.         .+ ..+..+++|++|
T Consensus       270 l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~-----~~~~~~~~l~~L~ls~n~l~---------~l-~~l~~l~~L~~L  334 (384)
T d2omza2         270 LGANQISNISPLAGLTALTNLELNENQLEDI-----SPISNLKNLTYLTLYFNNIS---------DI-SPVSSLTKLQRL  334 (384)
T ss_dssp             CCSSCCCCCGGGTTCTTCSEEECCSSCCSCC-----GGGGGCTTCSEEECCSSCCS---------CC-GGGGGCTTCCEE
T ss_pred             ccCcccCCCCccccccccccccccccccccc-----cccchhcccCeEECCCCCCC---------CC-cccccCCCCCEE
Confidence            5444221  1233444444444433321110     12344555555555552110         00 113345556666


Q ss_pred             EEEecCCCCCHHHHHHHHhhCCCceEEEE
Q 013265          310 EIIGTPKVNDLIFCIALLEAAPSLYKFSL  338 (446)
Q Consensus       310 ~L~~~~~~~~~~~l~~ll~~~p~L~~L~l  338 (446)
                      .+..+. ..++.    -+..+|+|+.|++
T Consensus       335 ~L~~n~-l~~l~----~l~~l~~L~~L~l  358 (384)
T d2omza2         335 FFANNK-VSDVS----SLANLTNINWLSA  358 (384)
T ss_dssp             ECCSSC-CCCCG----GGGGCTTCCEEEC
T ss_pred             ECCCCC-CCCCh----hHcCCCCCCEEEC
Confidence            665552 11111    1345566666665

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=9.1e-06  Score=66.56  Aligned_cols=79  Identities=15%  Similarity=0.139  Sum_probs=46.4

Q ss_pred             cccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeEeCCcCccceEEeeccCCCCeEEE----ECCce
Q 013265          152 SSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQL----HAPNL  227 (446)
Q Consensus       152 ~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~l~~~~i----~~p~L  227 (446)
                      .+...|++|+|++..++.  +..+... ++.|+.|++.++.. ..+.--..+++|++|.++++. +..+..    ..|+|
T Consensus        15 ~n~~~lr~L~L~~n~I~~--i~~~~~~-l~~L~~L~Ls~N~i-~~l~~~~~l~~L~~L~ls~N~-i~~l~~~~~~~l~~L   89 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIPV--IENLGAT-LDQFDAIDFSDNEI-RKLDGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDL   89 (162)
T ss_dssp             ECTTSCEEEECTTSCCCS--CCCGGGG-TTCCSEEECCSSCC-CEECCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTC
T ss_pred             cCcCcCcEEECCCCCCCc--cCccccc-cccCCEEECCCCCC-CccCCcccCcchhhhhccccc-ccCCCcccccccccc
Confidence            355678888888877653  2334566 88888888887743 222212344677777777765 444321    23555


Q ss_pred             eEEEEccc
Q 013265          228 LSFEYSGP  235 (446)
Q Consensus       228 ~~l~~~~~  235 (446)
                      +.|.+.++
T Consensus        90 ~~L~L~~N   97 (162)
T d1a9na_          90 TELILTNN   97 (162)
T ss_dssp             CEEECCSC
T ss_pred             ccceeccc
Confidence            55555444

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.56  E-value=2.3e-05  Score=73.25  Aligned_cols=162  Identities=18%  Similarity=0.164  Sum_probs=110.8

Q ss_pred             cccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeEeCCcCccceEEeeccCCCCeEE--EECCceeE
Q 013265          152 SSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQ--LHAPNLLS  229 (446)
Q Consensus       152 ~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~l~~~~--i~~p~L~~  229 (446)
                      ...++|++|.+.++.+++-.   .+.. +++|+.|++.++.......+ ..+++|+.|.+.++. +..+.  ...+.++.
T Consensus       216 ~~~~~L~~L~l~~n~l~~~~---~l~~-l~~L~~L~l~~n~l~~~~~~-~~~~~L~~L~l~~~~-l~~~~~~~~~~~l~~  289 (384)
T d2omza2         216 GILTNLDELSLNGNQLKDIG---TLAS-LTNLTDLDLANNQISNLAPL-SGLTKLTELKLGANQ-ISNISPLAGLTALTN  289 (384)
T ss_dssp             GGCTTCCEEECCSSCCCCCG---GGGG-CTTCSEEECCSSCCCCCGGG-TTCTTCSEEECCSSC-CCCCGGGTTCTTCSE
T ss_pred             cccCCCCEEECCCCCCCCcc---hhhc-ccccchhccccCccCCCCcc-cccccCCEeeccCcc-cCCCCcccccccccc
Confidence            35688999999988876531   2567 99999999998864433233 334789999998775 33321  13467777


Q ss_pred             EEEccccc--ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCccc
Q 013265          230 FEYSGPIL--PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLK  307 (446)
Q Consensus       230 l~~~~~~~--~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~  307 (446)
                      +...+...  ...+..+++++.+++..+.....     ..+..+++|++|++.++.+.         .++ .+..+++|+
T Consensus       290 l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l-----~~l~~l~~L~~L~L~~n~l~---------~l~-~l~~l~~L~  354 (384)
T d2omza2         290 LELNENQLEDISPISNLKNLTYLTLYFNNISDI-----SPVSSLTKLQRLFFANNKVS---------DVS-SLANLTNIN  354 (384)
T ss_dssp             EECCSSCCSCCGGGGGCTTCSEEECCSSCCSCC-----GGGGGCTTCCEEECCSSCCC---------CCG-GGGGCTTCC
T ss_pred             ccccccccccccccchhcccCeEECCCCCCCCC-----cccccCCCCCEEECCCCCCC---------CCh-hHcCCCCCC
Confidence            87776643  23466788899999876643221     23678999999999986432         111 356789999


Q ss_pred             EEEEEecCCCCCHHHHHHHHhhCCCceEEEEE
Q 013265          308 HLEIIGTPKVNDLIFCIALLEAAPSLYKFSLK  339 (446)
Q Consensus       308 ~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~  339 (446)
                      +|++..+.- .++.   . +.++|+|+.|+|+
T Consensus       355 ~L~l~~N~l-~~l~---~-l~~l~~L~~L~L~  381 (384)
T d2omza2         355 WLSAGHNQI-SDLT---P-LANLTRITQLGLN  381 (384)
T ss_dssp             EEECCSSCC-CBCG---G-GTTCTTCSEEECC
T ss_pred             EEECCCCcC-CCCh---h-hccCCCCCEeeCC
Confidence            999988742 2222   1 6889999999984

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.54  E-value=1.9e-05  Score=71.61  Aligned_cols=166  Identities=15%  Similarity=0.108  Sum_probs=79.9

Q ss_pred             cccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeEeCCcCccceEEeeccCCCCeEEE----ECCce
Q 013265          152 SSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQL----HAPNL  227 (446)
Q Consensus       152 ~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~l~~~~i----~~p~L  227 (446)
                      .++++|++|.+.++.+..-. ...+.. ++.|+.|.+.++........  ..+.++.|...... +..+..    ..+.+
T Consensus        52 ~~l~~L~~L~l~~n~~~~i~-~~~f~~-l~~L~~L~l~~n~l~~l~~~--~~~~l~~L~~~~n~-l~~l~~~~~~~~~~~  126 (305)
T d1xkua_          52 KNLKNLHTLILINNKISKIS-PGAFAP-LVKLERLYLSKNQLKELPEK--MPKTLQELRVHENE-ITKVRKSVFNGLNQM  126 (305)
T ss_dssp             TTCTTCCEEECCSSCCCCBC-TTTTTT-CTTCCEEECCSSCCSBCCSS--CCTTCCEEECCSSC-CCBBCHHHHTTCTTC
T ss_pred             hccccccccccccccccccc-hhhhhC-CCccCEecccCCccCcCccc--hhhhhhhhhccccc-hhhhhhhhhhccccc
Confidence            45677777777776654311 122556 78888888877643221111  11456666555443 222210    12334


Q ss_pred             eEEEEccccc------ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCC
Q 013265          228 LSFEYSGPIL------PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIP  301 (446)
Q Consensus       228 ~~l~~~~~~~------~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~  301 (446)
                      ..+.+.+...      ...+..++.|+.+.+..+......      ...+++++.|++.++...        ...+..+.
T Consensus       127 ~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~------~~~~~~L~~L~l~~n~~~--------~~~~~~~~  192 (305)
T d1xkua_         127 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP------QGLPPSLTELHLDGNKIT--------KVDAASLK  192 (305)
T ss_dssp             CEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCC------SSCCTTCSEEECTTSCCC--------EECTGGGT
T ss_pred             cccccccccccccCCCccccccccccCccccccCCccccC------cccCCccCEEECCCCcCC--------CCChhHhh
Confidence            4444333211      123445566666666554221110      123567777777652111        11123345


Q ss_pred             CCCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEE
Q 013265          302 EMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLK  339 (446)
Q Consensus       302 ~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~  339 (446)
                      .+++++.|.+..+.-...   ....+.++|+|++|+++
T Consensus       193 ~~~~l~~L~~s~n~l~~~---~~~~~~~l~~L~~L~L~  227 (305)
T d1xkua_         193 GLNNLAKLGLSFNSISAV---DNGSLANTPHLRELHLN  227 (305)
T ss_dssp             TCTTCCEEECCSSCCCEE---CTTTGGGSTTCCEEECC
T ss_pred             cccccccccccccccccc---ccccccccccceeeecc
Confidence            566777777765531110   01234567777777773

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=3.2e-05  Score=69.34  Aligned_cols=174  Identities=18%  Similarity=0.142  Sum_probs=115.0

Q ss_pred             ccccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeE--eCCcCccceEEeeccCCCCeEE----EEC
Q 013265          151 YSSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKV--SGPSLKLKHLKLNKLDNLKDLQ----LHA  224 (446)
Q Consensus       151 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i--~~~~~~L~~L~i~~~~~l~~~~----i~~  224 (446)
                      ..++++|+.|++++..+..-. ...+.. ++.++.+..........+.-  -..+++|+.|.+.++. +..+.    -..
T Consensus        52 f~~l~~L~~L~ls~n~l~~i~-~~~~~~-~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~  128 (284)
T d1ozna_          52 FRACRNLTILWLHSNVLARID-AAAFTG-LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGL  128 (284)
T ss_dssp             TTTCTTCCEEECCSSCCCEEC-TTTTTT-CTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTC
T ss_pred             hhccccccccccccccccccc-cccccc-cccccccccccccccccccchhhcccccCCEEecCCcc-cccccccccchh
Confidence            346788999998876654321 123566 88888887776655554421  1234789999888876 33221    124


Q ss_pred             CceeEEEEccccc----ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCC
Q 013265          225 PNLLSFEYSGPIL----PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDI  300 (446)
Q Consensus       225 p~L~~l~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~  300 (446)
                      ++|+.+.+.+...    +-.+.+.+.|+.+++..+.+.....   ..+..+++++.+.+..+.+       . ...+..+
T Consensus       129 ~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~---~~f~~l~~L~~l~l~~N~l-------~-~i~~~~f  197 (284)
T d1ozna_         129 AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE---RAFRGLHSLDRLLLHQNRV-------A-HVHPHAF  197 (284)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT---TTTTTCTTCCEEECCSSCC-------C-EECTTTT
T ss_pred             cccchhhhccccccccChhHhccccchhhcccccCcccccch---hhhccccccchhhhhhccc-------c-ccChhHh
Confidence            7788888887633    2346678899999997765443333   5667889999999987422       1 2225567


Q ss_pred             CCCCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEEEe
Q 013265          301 PEMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLKLV  341 (446)
Q Consensus       301 ~~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~~~  341 (446)
                      ..+++|++|++..+.-....   ...+..+++|+.|+++..
T Consensus       198 ~~l~~L~~L~l~~N~i~~~~---~~~~~~~~~L~~L~l~~N  235 (284)
T d1ozna_         198 RDLGRLMTLYLFANNLSALP---TEALAPLRALQYLRLNDN  235 (284)
T ss_dssp             TTCTTCCEEECCSSCCSCCC---HHHHTTCTTCCEEECCSS
T ss_pred             hhhhhccccccccccccccc---ccccccccccCEEEecCC
Confidence            78899999999888522211   235688999999999643

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=97.40  E-value=2.7e-05  Score=70.82  Aligned_cols=177  Identities=15%  Similarity=0.124  Sum_probs=83.7

Q ss_pred             cccccccCCccccccccceEEEEE-EeChHHHHHHHhcCCCCcceeeEeccCCCCce-eEeCCcCccceEEeeccCCCCe
Q 013265          142 YTFPSHLDFYSSFRHLTDLSLTTV-GITGEVLEHLLCYCCPVLEVLNVAESSSLTSL-KVSGPSLKLKHLKLNKLDNLKD  219 (446)
Q Consensus       142 ~~lp~~~~~~~~~~~L~~L~L~~~-~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~-~i~~~~~~L~~L~i~~~~~l~~  219 (446)
                      ..+|..   ..++++|++|+|+++ .+++. +..-+.. +++|+.|+|.++...+.. .......+|+.+.+..+.....
T Consensus        66 ~~lp~~---l~~L~~L~~L~Ls~~N~l~g~-iP~~i~~-L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~  140 (313)
T d1ogqa_          66 YPIPSS---LANLPYLNFLYIGGINNLVGP-IPPAIAK-LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT  140 (313)
T ss_dssp             EECCGG---GGGCTTCSEEEEEEETTEESC-CCGGGGG-CTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESC
T ss_pred             CCCChH---HhcCccccccccccccccccc-ccccccc-ccccchhhhccccccccccccccchhhhccccccccccccc
Confidence            345544   346788888888864 23321 2222667 888888888887643322 1122235677777765531111


Q ss_pred             E---EEECCceeEEEEccccc----ccccCCCCCc-ceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchh
Q 013265          220 L---QLHAPNLLSFEYSGPIL----PFSFRNVPNL-VDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEY  291 (446)
Q Consensus       220 ~---~i~~p~L~~l~~~~~~~----~~~~~~~~~L-~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~  291 (446)
                      +   .-..++|+.+.+.+...    +-.+..+..+ +.+.+..+.......   ..+..+.. ..+.+..+       . 
T Consensus       141 ~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~---~~~~~l~~-~~l~l~~~-------~-  208 (313)
T d1ogqa_         141 LPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP---PTFANLNL-AFVDLSRN-------M-  208 (313)
T ss_dssp             CCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECC---GGGGGCCC-SEEECCSS-------E-
T ss_pred             CchhhccCcccceeecccccccccccccccccccccccccccccccccccc---cccccccc-cccccccc-------c-
Confidence            1   01246677776665532    2233344443 444443332111111   12222222 23433331       0 


Q ss_pred             cccccccCCCCCCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEE
Q 013265          292 RAGRYLHDIPEMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLK  339 (446)
Q Consensus       292 ~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~  339 (446)
                      .....+.....+++++.|.+..+.....+.    -+..+++|+.|++.
T Consensus       209 ~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~----~~~~~~~L~~L~Ls  252 (313)
T d1ogqa_         209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLG----KVGLSKNLNGLDLR  252 (313)
T ss_dssp             EEECCGGGCCTTSCCSEEECCSSEECCBGG----GCCCCTTCCEEECC
T ss_pred             cccccccccccccccccccccccccccccc----ccccccccccccCc
Confidence            111223344456667777666553222211    23456677777763

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.29  E-value=2.6e-05  Score=72.10  Aligned_cols=174  Identities=16%  Similarity=0.095  Sum_probs=83.7

Q ss_pred             ccccccceEEEEEEeChH---HHHHHHhcCCCCcceeeEeccCCCCc-e-eEeCCcCccceEEeeccCCCCeEEEECCce
Q 013265          153 SFRHLTDLSLTTVGITGE---VLEHLLCYCCPVLEVLNVAESSSLTS-L-KVSGPSLKLKHLKLNKLDNLKDLQLHAPNL  227 (446)
Q Consensus       153 ~~~~L~~L~L~~~~~~~~---~l~~ll~~~cp~Le~L~L~~c~~~~~-~-~i~~~~~~L~~L~i~~~~~l~~~~i~~p~L  227 (446)
                      .+++|+.|+|.++.+++.   .+...+.. ++.|++|.+.+|..... . .+.   ..|..+...      ......+.|
T Consensus        91 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~-~~~L~~L~l~~n~l~~~~~~~l~---~~l~~~~~~------~~~~~~~~L  160 (344)
T d2ca6a1          91 KCPKLHTVRLSDNAFGPTAQEPLIDFLSK-HTPLEHLYLHNNGLGPQAGAKIA---RALQELAVN------KKAKNAPPL  160 (344)
T ss_dssp             TCTTCCEEECCSCCCCTTTHHHHHHHHHH-CTTCCEEECCSSCCHHHHHHHHH---HHHHHHHHH------HHHHTCCCC
T ss_pred             hCCCcccccccccccccccccchhhhhcc-cccchheeccccccccccccccc---ccccccccc------cccccCccc
Confidence            456677777777766554   34445556 77777777776642100 0 000   000000000      000122344


Q ss_pred             eEEEEcccccc--------cccCCCCCcceEEecccchhhh--hhhhhhhhccCCCceEEEEeecccccccchhcccccc
Q 013265          228 LSFEYSGPILP--------FSFRNVPNLVDASFWGCFSAYI--AKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYL  297 (446)
Q Consensus       228 ~~l~~~~~~~~--------~~~~~~~~L~~l~l~~~~~~~~--~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~  297 (446)
                      +.+.+.+....        ..+...+.|+++++..+.....  ...+...+..+++++.|++.++.+.    ......+.
T Consensus       161 ~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~----~~g~~~L~  236 (344)
T d2ca6a1         161 RSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT----HLGSSALA  236 (344)
T ss_dssp             CEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCH----HHHHHHHH
T ss_pred             ceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccc----cccccccc
Confidence            44444433110        1123456677777755432211  1113345667778888887764321    11111222


Q ss_pred             cCCCCCCcccEEEEEecC-CCCCHHHHHHHHhhC--CCceEEEEEE
Q 013265          298 HDIPEMCNLKHLEIIGTP-KVNDLIFCIALLEAA--PSLYKFSLKL  340 (446)
Q Consensus       298 ~~~~~~~~L~~L~L~~~~-~~~~~~~l~~ll~~~--p~L~~L~l~~  340 (446)
                      ..+..+++|++|.|..+. ....+..+...+..+  +.|++|+|+.
T Consensus       237 ~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~  282 (344)
T d2ca6a1         237 IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQY  282 (344)
T ss_dssp             HHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCS
T ss_pred             ccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCC
Confidence            344567778888877764 222334455555543  4677777743

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.00  E-value=0.001  Score=57.45  Aligned_cols=80  Identities=18%  Similarity=0.197  Sum_probs=55.0

Q ss_pred             ccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeE--eCCcCccceEEeeccCCCCeEE----EECCcee
Q 013265          155 RHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKV--SGPSLKLKHLKLNKLDNLKDLQ----LHAPNLL  228 (446)
Q Consensus       155 ~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i--~~~~~~L~~L~i~~~~~l~~~~----i~~p~L~  228 (446)
                      +++++|+|++..++.-. ...+.+ +++|++|++.++.....+..  ...++.+++|.+..+..+..+.    -+.++|+
T Consensus        29 ~~l~~L~Ls~n~i~~l~-~~~f~~-l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~  106 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQ-KGAFSG-FGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQ  106 (242)
T ss_dssp             SCCSEEEEESCCCCEEC-TTTTTT-CTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCC
T ss_pred             CCCCEEECcCCcCCccC-hhHhhc-cchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccc
Confidence            58999999987765211 123677 99999999999876554322  1234788888888776555442    3468899


Q ss_pred             EEEEcccc
Q 013265          229 SFEYSGPI  236 (446)
Q Consensus       229 ~l~~~~~~  236 (446)
                      .+.+.+..
T Consensus       107 ~l~l~~~~  114 (242)
T d1xwdc1         107 YLLISNTG  114 (242)
T ss_dssp             EEEEESCC
T ss_pred             ccccchhh
Confidence            99888764

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=96.87  E-value=0.00018  Score=65.17  Aligned_cols=122  Identities=16%  Similarity=0.241  Sum_probs=76.7

Q ss_pred             ccccceEEEEEEeChH-HHHHHHhcCCCCcceeeEeccCCCC-ce-eEeCCcCccceEEeeccCCCCeEEE----ECCce
Q 013265          155 RHLTDLSLTTVGITGE-VLEHLLCYCCPVLEVLNVAESSSLT-SL-KVSGPSLKLKHLKLNKLDNLKDLQL----HAPNL  227 (446)
Q Consensus       155 ~~L~~L~L~~~~~~~~-~l~~ll~~~cp~Le~L~L~~c~~~~-~~-~i~~~~~~L~~L~i~~~~~l~~~~i----~~p~L  227 (446)
                      .+++.|+|.+..++.. .+..-+.. ++.|++|+|.+|..+. .+ .--..+++|++|.++++. +..+..    ..++|
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~-L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~-l~~~~~~~~~~~~~L  127 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLAN-LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN-VSGAIPDFLSQIKTL  127 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGG-CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEEC-CEEECCGGGGGCTTC
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhc-Cccccccccccccccccccccccccccccchhhhcccc-ccccccccccchhhh
Confidence            3688899988766542 23334778 9999999999875543 22 112234789999999886 443322    24778


Q ss_pred             eEEEEcccc----cccccCCCCCcceEEecccchhhhhhhhhhhhccCCC-ceEEEEee
Q 013265          228 LSFEYSGPI----LPFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQ-LHTLKLDT  281 (446)
Q Consensus       228 ~~l~~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~-l~~L~L~~  281 (446)
                      +.+++.+..    .+..+.+++.++.++++.+......+   ..+..+.+ ++.+.+..
T Consensus       128 ~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip---~~~~~l~~l~~~l~~~~  183 (313)
T d1ogqa_         128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP---DSYGSFSKLFTSMTISR  183 (313)
T ss_dssp             CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECC---GGGGCCCTTCCEEECCS
T ss_pred             cccccccccccccCchhhccCcccceeeccccccccccc---ccccccccccccccccc
Confidence            888776652    34567788888888887653322222   23334444 36666554

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.85  E-value=0.00037  Score=56.82  Aligned_cols=74  Identities=14%  Similarity=0.096  Sum_probs=42.6

Q ss_pred             hhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEEecC-CC---CCHHHHHHHHhhCCCceEEEEE
Q 013265          264 LCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTP-KV---NDLIFCIALLEAAPSLYKFSLK  339 (446)
Q Consensus       264 l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~-~~---~~~~~l~~ll~~~p~L~~L~l~  339 (446)
                      +...+...+.|++|.|.++.+...    ....+...+...+.|++|+|..+. ..   .....+...++..+.|++|.++
T Consensus        64 la~~L~~n~~L~~L~L~~n~i~~~----g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~  139 (167)
T d1pgva_          64 LIELIETSPSLRVLNVESNFLTPE----LLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGIS  139 (167)
T ss_dssp             HHHHHHHCSSCCEEECCSSBCCHH----HHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred             HhhhhhhcccccceeeehhhcchH----HHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCc
Confidence            345666667777777777543211    111223334556677777776552 11   1234577778888888888775


Q ss_pred             Ee
Q 013265          340 LV  341 (446)
Q Consensus       340 ~~  341 (446)
                      +.
T Consensus       140 ~~  141 (167)
T d1pgva_         140 FA  141 (167)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=96.65  E-value=3.4e-05  Score=65.31  Aligned_cols=98  Identities=17%  Similarity=0.164  Sum_probs=52.3

Q ss_pred             cccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCce-eEeCCcCccceEEeeccCCCCeEE--EECCcee
Q 013265          152 SSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSL-KVSGPSLKLKHLKLNKLDNLKDLQ--LHAPNLL  228 (446)
Q Consensus       152 ~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~-~i~~~~~~L~~L~i~~~~~l~~~~--i~~p~L~  228 (446)
                      ..+++|++|+|++..+++-  .. +.+ +++|+.|++.+|.. ..+ .+....++|+.|.+.++. +..+.  ...++|+
T Consensus        45 ~~L~~L~~L~Ls~n~I~~i--~~-l~~-l~~L~~L~Ls~N~i-~~i~~~~~~~~~L~~L~l~~N~-i~~l~~~~~l~~L~  118 (198)
T d1m9la_          45 STLKACKHLALSTNNIEKI--SS-LSG-MENLRILSLGRNLI-KKIENLDAVADTLEELWISYNQ-IASLSGIEKLVNLR  118 (198)
T ss_dssp             HHTTTCCEEECSEEEESCC--CC-HHH-HTTCCEEECCEEEE-CSCSSHHHHHHHCCEEECSEEE-CCCHHHHHHHHHSS
T ss_pred             hcccccceeECcccCCCCc--cc-ccC-CccccChhhccccc-cccccccccccccccccccccc-cccccccccccccc
Confidence            4577888888888777642  11 456 88888888877642 111 111122456777766654 33321  1235566


Q ss_pred             EEEEcccccc-----cccCCCCCcceEEeccc
Q 013265          229 SFEYSGPILP-----FSFRNVPNLVDASFWGC  255 (446)
Q Consensus       229 ~l~~~~~~~~-----~~~~~~~~L~~l~l~~~  255 (446)
                      .|+++++.+.     ..+..+++|+.+++.++
T Consensus       119 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N  150 (198)
T d1m9la_         119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGN  150 (198)
T ss_dssp             EEEESEEECCCHHHHHHHTTTTTCSEEEECSS
T ss_pred             ccccccchhccccccccccCCCccceeecCCC
Confidence            6655554221     12345555555555443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.64  E-value=0.00017  Score=60.45  Aligned_cols=59  Identities=17%  Similarity=0.120  Sum_probs=32.6

Q ss_pred             ccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCce-eEeCCcCccceEEeecc
Q 013265          155 RHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSL-KVSGPSLKLKHLKLNKL  214 (446)
Q Consensus       155 ~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~-~i~~~~~~L~~L~i~~~  214 (446)
                      +++++|.|++..++...-...+.+ .++|++|.+.++...... ......++|++|.+++.
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~-l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N   88 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGR-LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGG-CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CCCCEEEeCCCCCcccccccccCC-CceEeeeeccccccccccccccccccccceeeeccc
Confidence            578888888877653222223566 888888888766543221 11112244555555444

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.56  E-value=0.00075  Score=54.81  Aligned_cols=74  Identities=16%  Similarity=0.140  Sum_probs=42.4

Q ss_pred             hhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEEecC---CCCCHHHHHHHHhhCCCceEEEEEE
Q 013265          264 LCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTP---KVNDLIFCIALLEAAPSLYKFSLKL  340 (446)
Q Consensus       264 l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~---~~~~~~~l~~ll~~~p~L~~L~l~~  340 (446)
                      +...+...++++.+.+.++.+...    ....+...+...++|+.++|..+.   .......+...++.+++|++|.+++
T Consensus        66 L~~~l~~~~~l~~l~l~~~~~~~~----g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~  141 (166)
T d1io0a_          66 LAEMLKVNNTLKSLNVESNFISGS----GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF  141 (166)
T ss_dssp             HHHHHHHCSSCCEEECCSSCCCHH----HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             HHHHHhhcccchhhhhccccccch----hHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcC
Confidence            445556667777777766433211    111223344455677776666543   1222345777788899999988865


Q ss_pred             e
Q 013265          341 V  341 (446)
Q Consensus       341 ~  341 (446)
                      .
T Consensus       142 ~  142 (166)
T d1io0a_         142 T  142 (166)
T ss_dssp             S
T ss_pred             C
Confidence            3

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=96.56  E-value=5.1e-05  Score=64.15  Aligned_cols=131  Identities=16%  Similarity=0.154  Sum_probs=65.4

Q ss_pred             HHhcCCCCcceeeEeccCCCCceeEeCCcCccceEEeeccCCCCeEEEECCceeEEEEcccccccccCCCCCcceEEecc
Q 013265          175 LLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQLHAPNLLSFEYSGPILPFSFRNVPNLVDASFWG  254 (446)
Q Consensus       175 ll~~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~l~~~~i~~p~L~~l~~~~~~~~~~~~~~~~L~~l~l~~  254 (446)
                      -++. +++|++|+|.++.. ..+.--..+++|+.|.++++. +..+.                 ......++|+.+++..
T Consensus        43 sl~~-L~~L~~L~Ls~n~I-~~i~~l~~l~~L~~L~Ls~N~-i~~i~-----------------~~~~~~~~L~~L~l~~  102 (198)
T d1m9la_          43 TLST-LKACKHLALSTNNI-EKISSLSGMENLRILSLGRNL-IKKIE-----------------NLDAVADTLEELWISY  102 (198)
T ss_dssp             HHHH-TTTCCEEECSEEEE-SCCCCHHHHTTCCEEECCEEE-ECSCS-----------------SHHHHHHHCCEEECSE
T ss_pred             HHhc-ccccceeECcccCC-CCcccccCCccccChhhcccc-ccccc-----------------cccccccccccccccc
Confidence            3667 99999999987642 222111233567777776664 22210                 0011223455555544


Q ss_pred             cchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEEecC------CCCCHH-HHHHHH
Q 013265          255 CFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTP------KVNDLI-FCIALL  327 (446)
Q Consensus       255 ~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~------~~~~~~-~l~~ll  327 (446)
                      +.+...     .-+..+++|+.|+++++.+..    .   .....+..+++|+.|.+.++.      ...... .-..++
T Consensus       103 N~i~~l-----~~~~~l~~L~~L~L~~N~i~~----~---~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi  170 (198)
T d1m9la_         103 NQIASL-----SGIEKLVNLRVLYMSNNKITN----W---GEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVV  170 (198)
T ss_dssp             EECCCH-----HHHHHHHHSSEEEESEEECCC----H---HHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHH
T ss_pred             cccccc-----ccccccccccccccccchhcc----c---cccccccCCCccceeecCCCccccCcccccchhhHHHHHH
Confidence            322111     123455667777776642210    0   001124456777777776652      111111 123457


Q ss_pred             hhCCCceEEE
Q 013265          328 EAAPSLYKFS  337 (446)
Q Consensus       328 ~~~p~L~~L~  337 (446)
                      ..+|+|+.|+
T Consensus       171 ~~lp~L~~LD  180 (198)
T d1m9la_         171 KRLPNLKKLD  180 (198)
T ss_dssp             HHCSSCCEES
T ss_pred             HHCCCcCEeC
Confidence            7888888875

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.51  E-value=0.00048  Score=53.06  Aligned_cols=59  Identities=19%  Similarity=0.132  Sum_probs=27.0

Q ss_pred             hccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEE
Q 013265          268 SIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSL  338 (446)
Q Consensus       268 l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l  338 (446)
                      +..+++|+.|.+....+.         .++ .+..+++|++|.+..+.-. ++.. ...+..+|+|+.|++
T Consensus        39 ~~~l~~L~~L~l~~N~i~---------~l~-~~~~l~~L~~L~l~~N~i~-~~~~-~~~l~~~~~L~~L~l   97 (124)
T d1dcea3          39 LAALRCLEVLQASDNALE---------NVD-GVANLPRLQELLLCNNRLQ-QSAA-IQPLVSCPRLVLLNL   97 (124)
T ss_dssp             GGGCTTCCEEECCSSCCC---------CCG-GGTTCSSCCEEECCSSCCC-SSST-TGGGGGCTTCCEEEC
T ss_pred             hhhhhccccccccccccc---------ccC-ccccccccCeEECCCCccC-CCCC-chhhcCCCCCCEEEC
Confidence            345556666666553221         111 2345556666666555310 0001 122455666666666

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.44  E-value=0.00062  Score=61.15  Aligned_cols=34  Identities=21%  Similarity=0.123  Sum_probs=16.8

Q ss_pred             ccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEecc
Q 013265          153 SFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAES  191 (446)
Q Consensus       153 ~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c  191 (446)
                      ++++|++|++.+..++.-.    ... ++.|+.|.+.+.
T Consensus        77 ~l~~L~~L~l~~n~l~~l~----~~~-~~~l~~L~~~~n  110 (305)
T d1xkua_          77 PLVKLERLYLSKNQLKELP----EKM-PKTLQELRVHEN  110 (305)
T ss_dssp             TCTTCCEEECCSSCCSBCC----SSC-CTTCCEEECCSS
T ss_pred             CCCccCEecccCCccCcCc----cch-hhhhhhhhcccc
Confidence            4566666666665443210    112 445555555443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.35  E-value=0.00094  Score=51.35  Aligned_cols=39  Identities=23%  Similarity=0.303  Sum_probs=22.6

Q ss_pred             ccccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccC
Q 013265          151 YSSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESS  192 (446)
Q Consensus       151 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~  192 (446)
                      ...+++|++|++++..+++  +..-+.. +++|+.|.+.++.
T Consensus        16 l~~l~~L~~L~ls~N~l~~--lp~~~~~-l~~L~~L~l~~N~   54 (124)
T d1dcea3          16 LEQLLLVTHLDLSHNRLRA--LPPALAA-LRCLEVLQASDNA   54 (124)
T ss_dssp             GGGGTTCCEEECCSSCCCC--CCGGGGG-CTTCCEEECCSSC
T ss_pred             cccCCCCCEEECCCCccCc--chhhhhh-hhccccccccccc
Confidence            3456667777777666543  1112455 6777777766653

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.06  E-value=0.0025  Score=60.02  Aligned_cols=120  Identities=15%  Similarity=0.186  Sum_probs=70.3

Q ss_pred             ccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeEeCCcCccceEEeeccCCCCeEEEECCceeEEEEcc
Q 013265          155 RHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKVSGPSLKLKHLKLNKLDNLKDLQLHAPNLLSFEYSG  234 (446)
Q Consensus       155 ~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~~~~l~~~~i~~p~L~~l~~~~  234 (446)
                      ++|++|++++..+++.++..++.. +++|+.|+|.+|. +....+       +.|                         
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~-l~~l~~L~L~~~~-i~~~~~-------~~l-------------------------   47 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPL-LQQCQVVRLDDCG-LTEARC-------KDI-------------------------   47 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHH-HTTCSEEEEESSC-CCHHHH-------HHH-------------------------
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHh-CCCCCEEEeCCCC-CCHHHH-------HHH-------------------------
Confidence            578999999999999999999999 9999999999994 221100       000                         


Q ss_pred             cccccccCCCCCcceEEecccchh-hhhhhhhhhhc-cCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEE
Q 013265          235 PILPFSFRNVPNLVDASFWGCFSA-YIAKNLCQHSI-FLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEII  312 (446)
Q Consensus       235 ~~~~~~~~~~~~L~~l~l~~~~~~-~~~~~l~~~l~-~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~  312 (446)
                         .-.+...++|++++++.+... .....+...+. ..++|++|++..+.+.    ......+...+..+++|++|.+.
T Consensus        48 ---~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it----~~~~~~l~~~l~~~~~L~~L~L~  120 (460)
T d1z7xw1          48 ---SSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT----GAGCGVLSSTLRTLPTLQELHLS  120 (460)
T ss_dssp             ---HHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCB----GGGHHHHHHHTTSCTTCCEEECC
T ss_pred             ---HHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCcc----ccccccccchhhccccccccccc
Confidence               000112333333333332221 11122223332 3357999999886432    11112233446678899999998


Q ss_pred             ecC
Q 013265          313 GTP  315 (446)
Q Consensus       313 ~~~  315 (446)
                      .+.
T Consensus       121 ~N~  123 (460)
T d1z7xw1         121 DNL  123 (460)
T ss_dssp             SSB
T ss_pred             ccc
Confidence            774

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.95  E-value=0.006  Score=48.63  Aligned_cols=77  Identities=18%  Similarity=0.153  Sum_probs=47.0

Q ss_pred             ccCCCCCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEEecCC--C
Q 013265          240 SFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTPK--V  317 (446)
Q Consensus       240 ~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~--~  317 (446)
                      .+.++++|+.+++..+.+.....   ..+..+++|++|+|+...+.         .++.......+|++|.|.++.-  .
T Consensus        51 ~f~~l~~L~~L~Ls~N~l~~i~~---~~f~~l~~L~~L~Ls~N~l~---------~l~~~~~~~~~l~~L~L~~Np~~C~  118 (156)
T d2ifga3          51 DLRGLGELRNLTIVKSGLRFVAP---DAFHFTPRLSRLNLSFNALE---------SLSWKTVQGLSLQELVLSGNPLHCS  118 (156)
T ss_dssp             GSCSCCCCSEEECCSSCCCEECT---TGGGSCSCCCEEECCSSCCS---------CCCSTTTCSCCCCEEECCSSCCCCC
T ss_pred             hhccccccCcceeeccccCCccc---ccccccccccceeccCCCCc---------ccChhhhccccccccccCCCcccCC
Confidence            35677788888887665444333   55677889999999874332         1122222234688888887752  3


Q ss_pred             CCHHHHHHHHh
Q 013265          318 NDLIFCIALLE  328 (446)
Q Consensus       318 ~~~~~l~~ll~  328 (446)
                      .+..++...++
T Consensus       119 C~~~~l~~~~~  129 (156)
T d2ifga3         119 CALRWLQRWEE  129 (156)
T ss_dssp             GGGHHHHHHHH
T ss_pred             chHHHHHHHHH
Confidence            44455655554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.94  E-value=0.0012  Score=62.17  Aligned_cols=120  Identities=13%  Similarity=0.077  Sum_probs=65.5

Q ss_pred             CCcceEEecccchhhhhhhhhhhhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEEecCC-CCCHHHH
Q 013265          245 PNLVDASFWGCFSAYIAKNLCQHSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTPK-VNDLIFC  323 (446)
Q Consensus       245 ~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~-~~~~~~l  323 (446)
                      ++|+++++....+.  ..++..++..++++++|.|.+|.+..    .....+...+..+++|++|+|+.+.- ...+..+
T Consensus         2 ~~l~~ld~~~~~i~--~~~~~~l~~~l~~l~~L~L~~~~i~~----~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l   75 (460)
T d1z7xw1           2 LDIQSLDIQCEELS--DARWAELLPLLQQCQVVRLDDCGLTE----ARCKDISSALRVNPALAELNLRSNELGDVGVHCV   75 (460)
T ss_dssp             EEEEEEEEESCCCC--HHHHHHHHHHHTTCSEEEEESSCCCH----HHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHH
T ss_pred             CCCCEEEeeCCcCC--hHHHHHHHHhCCCCCEEEeCCCCCCH----HHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHH
Confidence            46788888765332  23445788888999999999875421    11112233345678889988876531 1112223


Q ss_pred             HHHHh-hCCCceEEEEEEecccccccccccccccCCCCccccccCCCcEEEEEeee
Q 013265          324 IALLE-AAPSLYKFSLKLVSQYDYESYESVKTIKDQPYLSFTELRSIRVVELLGFV  378 (446)
Q Consensus       324 ~~ll~-~~p~L~~L~l~~~~~~~~~~~~~~~~~p~c~~~~~~~l~~L~~v~i~~~~  378 (446)
                      ...++ ..++|++|++.   .+...+.+. ..+++...    .+.+|+++.+.+..
T Consensus        76 ~~~l~~~~~~L~~L~L~---~n~it~~~~-~~l~~~l~----~~~~L~~L~L~~N~  123 (460)
T d1z7xw1          76 LQGLQTPSCKIQKLSLQ---NCCLTGAGC-GVLSSTLR----TLPTLQELHLSDNL  123 (460)
T ss_dssp             HHTTCSTTCCCCEEECT---TSCCBGGGH-HHHHHHTT----SCTTCCEEECCSSB
T ss_pred             HHHHhcCCCCCCEEECC---CCCcccccc-ccccchhh----cccccccccccccc
Confidence            33232 34578888883   333332221 11121111    23778888887643

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.88  E-value=0.0014  Score=53.14  Aligned_cols=94  Identities=14%  Similarity=0.109  Sum_probs=52.5

Q ss_pred             CCCCCcccEEEEEecC-CCCCHHHHHHHHhhCCCceEEEEEEecccccccccc--c-ccccCCCCccccccCCCcEEEEE
Q 013265          300 IPEMCNLKHLEIIGTP-KVNDLIFCIALLEAAPSLYKFSLKLVSQYDYESYES--V-KTIKDQPYLSFTELRSIRVVELL  375 (446)
Q Consensus       300 ~~~~~~L~~L~L~~~~-~~~~~~~l~~ll~~~p~L~~L~l~~~~~~~~~~~~~--~-~~~p~c~~~~~~~l~~L~~v~i~  375 (446)
                      +...++|++|.|..+. .......+...++.++.|++|+|..+   ...+.+.  + ..+..+        .+|+++.+.
T Consensus        40 L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n---~i~~~g~~~l~~aL~~n--------~sL~~L~l~  108 (167)
T d1pgva_          40 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN---FLTPELLARLLRSTLVT--------QSIVEFKAD  108 (167)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS---BCCHHHHHHHHHHTTTT--------CCCSEEECC
T ss_pred             HhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehh---hcchHHHHHHHHHHHhC--------CcCCEEECC
Confidence            3444566666665553 22223456667777888888887433   2222221  1 112232        668888886


Q ss_pred             eee----cCcchHHHHHHHHhcCccccceEEecC
Q 013265          376 GFV----GHTADFELVMYLIFSAKLLEKIIIDPC  405 (446)
Q Consensus       376 ~~~----g~~~e~~~~~~ll~~a~~Le~l~i~~~  405 (446)
                      +..    |.+....++..|-.| ++|+++.+...
T Consensus       109 ~n~~~~~g~~~~~~l~~~L~~n-~sL~~l~l~~~  141 (167)
T d1pgva_         109 NQRQSVLGNQVEMDMMMAIEEN-ESLLRVGISFA  141 (167)
T ss_dssp             CCSSCCCCHHHHHHHHHHHHHC-SSCCEEECCCC
T ss_pred             CCcCCCccHHHHHHHHHHHHhC-CCccEeeCcCC
Confidence            542    344455677666555 78888877654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.87  E-value=0.0056  Score=50.58  Aligned_cols=99  Identities=20%  Similarity=0.220  Sum_probs=50.0

Q ss_pred             ccceEEeeccCCCCe-EE----EECCceeEEEEccccc----ccccCCCCCcceEEecccchhhhhhhhhhhhccCCCce
Q 013265          205 KLKHLKLNKLDNLKD-LQ----LHAPNLLSFEYSGPIL----PFSFRNVPNLVDASFWGCFSAYIAKNLCQHSIFLVQLH  275 (446)
Q Consensus       205 ~L~~L~i~~~~~l~~-~~----i~~p~L~~l~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~l~~l~~l~  275 (446)
                      .+++|.+++.. +.. +.    ...++|+.|++.+...    +..+...++|++++++.+.+.....   ..+.++++|+
T Consensus        30 ~l~~L~Ls~N~-i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~---~~F~~l~~L~  105 (192)
T d1w8aa_          30 HTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISN---KMFLGLHQLK  105 (192)
T ss_dssp             TCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECS---SSSTTCTTCC
T ss_pred             CCCEEEeCCCC-CcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCH---HHHhCCCccc
Confidence            55666665554 221 11    1235666666555422    2344456666777666554333322   3455666777


Q ss_pred             EEEEeecccccccchhcccccccCCCCCCcccEEEEEecC
Q 013265          276 TLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTP  315 (446)
Q Consensus       276 ~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~  315 (446)
                      .|+|....+.        ..-+..+..+++|++|.|..+.
T Consensus       106 ~L~L~~N~l~--------~i~~~~f~~l~~L~~l~L~~N~  137 (192)
T d1w8aa_         106 TLNLYDNQIS--------CVMPGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             EEECCSSCCC--------EECTTSSTTCTTCCEEECTTCC
T ss_pred             ccccCCcccc--------ccCHHHhcCCcccccccccccc
Confidence            7777663221        1112234556667777666553

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.41  E-value=0.022  Score=48.48  Aligned_cols=84  Identities=12%  Similarity=0.228  Sum_probs=53.6

Q ss_pred             cCCcEEEEeeeccccccccccccccccccCCccccccccceEEEEEEeChHHHHHHHhcCCCCcceeeEeccCCCCceeE
Q 013265          120 RRVRRLELDFSRVVYNLRFVGQYTFPSHLDFYSSFRHLTDLSLTTVGITGEVLEHLLCYCCPVLEVLNVAESSSLTSLKV  199 (446)
Q Consensus       120 ~~l~~L~l~~~~~~~~~~~~~~~~lp~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~~cp~Le~L~L~~c~~~~~~~i  199 (446)
                      +++++|++.....         -.+|...  ..++++|++|.|.+..+....-...+.+ ++.+++|.+..+..+.....
T Consensus        29 ~~l~~L~Ls~n~i---------~~l~~~~--f~~l~~L~~L~ls~n~~~~~i~~~~f~~-l~~l~~l~~~~~n~l~~~~~   96 (242)
T d1xwdc1          29 RNAIELRFVLTKL---------RVIQKGA--FSGFGDLEKIEISQNDVLEVIEADVFSN-LPKLHEIRIEKANNLLYINP   96 (242)
T ss_dssp             SCCSEEEEESCCC---------CEECTTT--TTTCTTCCEEEEESCTTCCEECSSSEES-CTTCCEEEEECCTTCCEECT
T ss_pred             CCCCEEECcCCcC---------CccChhH--hhccchhhhhhhccccccceeecccccc-cccccccccccccccccccc
Confidence            4688887754321         2344432  3568999999999875443211112567 99999999988766544321


Q ss_pred             --eCCcCccceEEeeccC
Q 013265          200 --SGPSLKLKHLKLNKLD  215 (446)
Q Consensus       200 --~~~~~~L~~L~i~~~~  215 (446)
                        -..+++|++|.+.++.
T Consensus        97 ~~~~~l~~L~~l~l~~~~  114 (242)
T d1xwdc1          97 EAFQNLPNLQYLLISNTG  114 (242)
T ss_dssp             TSEECCTTCCEEEEESCC
T ss_pred             ccccccccccccccchhh
Confidence              1234789999998875

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=93.70  E-value=0.012  Score=47.26  Aligned_cols=124  Identities=12%  Similarity=0.069  Sum_probs=70.6

Q ss_pred             hhhccCCCceEEEEeecc-cccccchhcccccccCCCCCCcccEEEEEecC-CCCCHHHHHHHHhhCCCceEEEEEEecc
Q 013265          266 QHSIFLVQLHTLKLDTCH-LLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTP-KVNDLIFCIALLEAAPSLYKFSLKLVSQ  343 (446)
Q Consensus       266 ~~l~~l~~l~~L~L~~~~-~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~-~~~~~~~l~~ll~~~p~L~~L~l~~~~~  343 (446)
                      .+....++|++|.+.+.. +.    ......+...+...++|++|+|..+. .......+...++..+.++.+++...  
T Consensus        11 ~~~~~~~~L~~L~L~~~~~i~----~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~--   84 (166)
T d1io0a_          11 RIQNNDPDLEEVNLNNIMNIP----VPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN--   84 (166)
T ss_dssp             HHHTTCTTCCEEECTTCTTCC----HHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS--
T ss_pred             HHHhcCCCCcEEEcCCCCCCC----HHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccc--
Confidence            455566777777776521 10    11111223334566778888887774 33335567788888999999887432  


Q ss_pred             cccccccc---cccccCCCCccccccCCCcEEEEEeee---cCcchHHHHHHHHhcCccccceEEecC
Q 013265          344 YDYESYES---VKTIKDQPYLSFTELRSIRVVELLGFV---GHTADFELVMYLIFSAKLLEKIIIDPC  405 (446)
Q Consensus       344 ~~~~~~~~---~~~~p~c~~~~~~~l~~L~~v~i~~~~---g~~~e~~~~~~ll~~a~~Le~l~i~~~  405 (446)
                       ...+.+.   ...+..+        .+|+.+.+....   |.+....++..| +..+.|+++.+...
T Consensus        85 -~~~~~g~~~l~~~l~~~--------~~L~~l~L~l~~n~i~~~~~~~La~~L-~~n~~L~~L~l~~~  142 (166)
T d1io0a_          85 -FISGSGILALVEALQSN--------TSLIELRIDNQSQPLGNNVEMEIANML-EKNTTLLKFGYHFT  142 (166)
T ss_dssp             -CCCHHHHHHHHHGGGGC--------SSCCEEECCCCSSCCCHHHHHHHHHHH-HHCSSCCEEECCCS
T ss_pred             -cccchhHHHHHHHHHhC--------ccccEEeeccCCCcCcHHHHHHHHHHH-HhCCCcCEEeCcCC
Confidence             2222221   1122333        678887776432   334444555554 66788999988654

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=91.05  E-value=0.13  Score=45.59  Aligned_cols=54  Identities=13%  Similarity=0.089  Sum_probs=31.9

Q ss_pred             hhccCCCceEEEEeecccccccchhcccccccCCCCCCcccEEEEEecCCCCCHHHHHHHHhhCCCceEEEEE
Q 013265          267 HSIFLVQLHTLKLDTCHLLIGDSEYRAGRYLHDIPEMCNLKHLEIIGTPKVNDLIFCIALLEAAPSLYKFSLK  339 (446)
Q Consensus       267 ~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~ll~~~p~L~~L~l~  339 (446)
                      +...+++|++|+|+++.+.         .++   ..+++|++|.|..+. ..++.      +..++|++|+++
T Consensus       279 ~~~~~~~L~~L~Ls~N~l~---------~lp---~~~~~L~~L~L~~N~-L~~l~------~~~~~L~~L~L~  332 (353)
T d1jl5a_         279 LCDLPPSLEELNVSNNKLI---------ELP---ALPPRLERLIASFNH-LAEVP------ELPQNLKQLHVE  332 (353)
T ss_dssp             ECCCCTTCCEEECCSSCCS---------CCC---CCCTTCCEEECCSSC-CSCCC------CCCTTCCEEECC
T ss_pred             ccccCCCCCEEECCCCccC---------ccc---cccCCCCEEECCCCc-CCccc------cccCCCCEEECc
Confidence            3445678888888874221         111   246788888887663 11211      234688888874

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=89.89  E-value=0.13  Score=45.59  Aligned_cols=53  Identities=19%  Similarity=-0.001  Sum_probs=35.3

Q ss_pred             CcCccceEEeeccCCCCeEEEECCceeEEEEcccccccccCCCCCcceEEeccc
Q 013265          202 PSLKLKHLKLNKLDNLKDLQLHAPNLLSFEYSGPILPFSFRNVPNLVDASFWGC  255 (446)
Q Consensus       202 ~~~~L~~L~i~~~~~l~~~~i~~p~L~~l~~~~~~~~~~~~~~~~L~~l~l~~~  255 (446)
                      ..++|++|.+++|. +..+.-..|+|+.|++.++...-.....++|+++++.++
T Consensus       282 ~~~~L~~L~Ls~N~-l~~lp~~~~~L~~L~L~~N~L~~l~~~~~~L~~L~L~~N  334 (353)
T d1jl5a_         282 LPPSLEELNVSNNK-LIELPALPPRLERLIASFNHLAEVPELPQNLKQLHVEYN  334 (353)
T ss_dssp             CCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSS
T ss_pred             cCCCCCEEECCCCc-cCccccccCCCCEEECCCCcCCccccccCCCCEEECcCC
Confidence            34678888888875 665544457888888877654322223457888888766

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.35  E-value=0.19  Score=39.29  Aligned_cols=37  Identities=22%  Similarity=0.138  Sum_probs=17.5

Q ss_pred             ccccccceEEEEEE-eChHHHHHHHhcCCCCcceeeEecc
Q 013265          153 SFRHLTDLSLTTVG-ITGEVLEHLLCYCCPVLEVLNVAES  191 (446)
Q Consensus       153 ~~~~L~~L~L~~~~-~~~~~l~~ll~~~cp~Le~L~L~~c  191 (446)
                      ++++|++|++.+.. ++.-.. ..+.+ +++|+.|++.++
T Consensus        29 ~l~~l~~L~l~~n~~l~~i~~-~~f~~-l~~L~~L~Ls~N   66 (156)
T d2ifga3          29 GAENLTELYIENQQHLQHLEL-RDLRG-LGELRNLTIVKS   66 (156)
T ss_dssp             SCSCCSEEECCSCSSCCEECG-GGSCS-CCCCSEEECCSS
T ss_pred             CccccCeeecCCCccccccCc-hhhcc-ccccCcceeecc
Confidence            34566666664332 221000 11445 666666666655