Citrus Sinensis ID: 013266

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440------
Protein Sequence
MEENNYFDFSFQTQTRPSSNSVSVEESVKRQQEPWNFNKPTKESDFSTENPGVKSEFAPMESFSSDMASYQTNVQSNAAPQSGNYGHYNQSSAYTREQKRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKPTSTRRSSSSQSMQHSTCANSDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSPTSNPIGDDDENEPDAKRWKGENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVPAARGSGYTLTRPLPNTNTGNVPVPIRPSVTAMASHSNLSNYSNSLNNTRFPSSSGSQAPYTAAMLQSTGSYGISGFAKPTGSYMMNQTQQSDGLFNRAKDEPRDDLFLESFLNSNS
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccEEEEEccccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccEEEccccccccEEEccccccccEEEEEEcccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccEEEEEEccccccccccccHEHcccEEEccccccccEEEEcccccccccEEEEccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
meennyfdfsfqtqtrpssnsvsvEESVkrqqepwnfnkptkesdfstenpgvksefapmesfssdmasyqtnvqsnaapqsgnyghynqssaytreqkrsedgynwrkygqkqvkgsenprsyfkctfpdcpmkkkversldGQITEIVYkgshnhpkptstrrssssqsmqhstcansdlsdqsvgplgnthtdsfsmqnesstsfgeddfveqgsptsnpigdddenepdakrwkgendiegvigtgsrtvreprivvqttsdidilddgyrwrKYGQkvvkgnpnprsyykctttgcpvrkhverASHDMRAVITTYegkhnhdvpaargsgytltrplpntntgnvpvpirpsvtamashsnlsnysnslnntrfpsssgsqapyTAAMLQstgsygisgfakptgsymmnqtqqsdglfnrakdeprddlFLESFLNSNS
Flexible Loop (DISEMBL)
meennyfdfsfqtqtrpssnsVSVEESvkrqqepwnfnkptkesdfstenpgVKSEFAPMESFSSDMASYQTNVQSNAapqsgnyghynqssaYTREQKRSEDGYNWRKYgqkqvkgsenprsyfKCTFPDCPMKKKVERSLDGQITEIvykgshnhpkptstrrssssqsMQHSTCANSDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSptsnpigdddenepdakrwkgendiegvigtgsrtvreprivvqttsdidilddgyrWRKYgqkvvkgnpnprsyykctttgcpvrkhveraSHDMRAVITtyegkhnhdvpaARGSGYTLTRPLPNTNTGNVPVPIRPSVTAMASHSNLSNYSNSLNNTRFPSSSGSQAPYTAAMLQSTGSYGISGFAKPTGSYMMNQTQQSDGLFNRAKDEPRDDLFLesflnsns
Low Complexity Region (SEG)
MEENNYFDFSFQTQTRPssnsvsveesvKRQQEPWNFNKPTKESDFSTENPGVKSEFAPMESFSSDMASYQTNVQSNAAPQSGNYGHYNQSSAYTREQKRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKPtstrrssssqsmqhstCANSDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSPTSNPIGDDDENEPDAKRWKGENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVPAARGSGYTLTRPLPNTNTGNVPVPIRPSVTAMAshsnlsnysnslnnTRFPSSSGSQAPYTAAMLQSTGSYGISGFAKPTGSYMMNQTQQSDGLFNRAKDEPRDDLFLESFLNSNS
Disordered region (IsUnstruct)
***************************************************************************************************************************YFKCTFPDCPM*********GQITEIVY********************************************************************************************EGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGK**************************************************************************************************************************
Disordered Region (DISOPRED)
****NYF*************************************************************************************************YNWRKYGQK****SENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKPTSTRRSSSSQSMQHSTCANSDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSPTSNPIGDDDENEPDAKRWKGENDI*****************VQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNH***********************************************************************************************************DLFL*SFLN***
Disordered Region (DISEMBL)
MEENNYFDFSF*********************EPWNFNKPT**********GVKSEFAPMESFSSDMASYQTNVQSNAAPQSGNYGHYNQSSAYTREQKRSEDGYNWRKYG********NPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSH*************************DLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSPTSNPIGDDDENEPDAKRWKGENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVPAARGSGYTLTRPLPNTNTGNVPVPIRPSVTAMASHSNLSNYSNSLNNTR*********PYTAAMLQSTGSYGISGFAKPTGSYMMNQTQQSDGLFNRAKDEPRDDLFLESFLNSNS
Disordered Region (DISPRO)
***************************************************************************************************RSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHN*************************************************************************************************VREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNH**********************************************************************T*SYGISGF*KP*************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEENNYFDFSFQTQTRPSSNSVSVEESVKRQQEPWNFNKPTKESDFSTENPGVKSEFAPMESFSSDMASYQTNVQSNAAPQSGNYGHYNQSSAYTREQKRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKPTSTRRSSSSQSMQHSTCANSDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSPTSNPIGDDDENEPDAKRWKGENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVPAARGSGYTLTRPLPNTNTGNVPVPIRPSVTAMASHSNLSNYSNSLNNTRFPSSSGSQAPYTAAMLQSTGSYGISGFAKPTGSYMMNQTQQSDGLFNRAKDEPRDDLFLESFLNSNS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	446	2.2.26 [Sep-21-2011]
Q8S8P5	519	Probable WRKY transcripti	yes	no	0.746	0.641	0.605	1e-106
Q9ZQ70	513	Probable WRKY transcripti	no	no	0.549	0.477	0.554	4e-74
Q9C5T3	309	Probable WRKY transcripti	no	no	0.408	0.588	0.588	5e-69
Q9XI90	514	Probable WRKY transcripti	no	no	0.508	0.441	0.544	6e-69
Q93WV0	557	Probable WRKY transcripti	no	no	0.520	0.416	0.535	2e-67
Q9FG77	687	Probable WRKY transcripti	no	no	0.520	0.337	0.498	3e-66
O22921	393	Probable WRKY transcripti	no	no	0.652	0.740	0.462	2e-65
O65590	568	Probable WRKY transcripti	no	no	0.524	0.411	0.509	4e-62
Q93WU7	423	Probable WRKY transcripti	no	no	0.452	0.477	0.543	3e-58
Q9SI37	487	WRKY transcription factor	no	no	0.587	0.537	0.431	3e-53

>sp|Q8S8P5|WRK33_ARATH Probable WRKY transcription factor 33 OS=Arabidopsis thaliana GN=WRKY33 PE=1 SV=2

 Score =  386 bits (991), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 224/370 (60%), Positives = 261/370 (70%), Gaps = 37/370 (10%)

Query: 89  NQSSAYT-REQKRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQIT 147
           NQ+ +Y  REQ++ EDGYNWRKYGQKQVKGSENPRSY+KCTFP+CP KKKVERSL+GQIT
Sbjct: 170 NQAVSYNGREQRKGEDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERSLEGQIT 229

Query: 148 EIVYKGSHNHPKPTSTRRSSSSQSMQHSTCANSDL-------SDQSVGPLGNTHTDSFSM 200
           EIVYKGSHNHPKP STRRSSSS S  HS   N+ L       SDQ         +DSF M
Sbjct: 230 EIVYKGSHNHPKPQSTRRSSSSSSTFHSAVYNASLDHNRQASSDQPNSNNSFHQSDSFGM 289

Query: 201 QNESST---SFGEDDFVEQGSPTSNPIGDDDENEPDAKRWKGENDIEGVIGTGSRTVREP 257
           Q E +T   S G+D+F EQGS   +   +D  +EP+AKRWKG+N+  G  G GS+TVREP
Sbjct: 290 QQEDNTTSDSVGDDEF-EQGSSIVSRDEEDCGSEPEAKRWKGDNETNGGNGGGSKTVREP 348

Query: 258 RIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAV 317
           RIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTT GCPVRKHVERASHDMRAV
Sbjct: 349 RIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTIGCPVRKHVERASHDMRAV 408

Query: 318 ITTYEGKHNHDVPAARGSGYTLTRPLPNTNTGNVPVPIRPSVTAMASHSNLSNYSNSLNN 377
           ITTYEGKHNHDVPAARGSGY   R   ++++    VPIRP+  A+A HSN          
Sbjct: 409 ITTYEGKHNHDVPAARGSGYATNRAPQDSSS----VPIRPA--AIAGHSNY--------- 453

Query: 378 TRFPSSSGSQAPYTAAMLQ----STGSYGISGFAKPTGSYMMNQTQQSDGLFNRAKDEPR 433
                ++ SQAPYT  ML     +TG +G +       S +  Q     G F+RAK+EP 
Sbjct: 454 -----TTSSQAPYTLQMLHNNNTNTGPFGYAMNNNNNNSNLQTQQNFVGGGFSRAKEEPN 508

Query: 434 DDL-FLESFL 442
           ++  F +SF+
Sbjct: 509 EETSFFDSFM 518

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZQ70|WRKY3_ARATH Probable WRKY transcription factor 3 OS=Arabidopsis thaliana GN=WRKY3 PE=2 SV=1

 Score =  278 bits (712), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 142/256 (55%), Positives = 174/256 (67%), Gaps = 11/256 (4%)

Query: 99  KRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHP 158
           K ++DGYNWRKYGQKQVKGS+ PRSY+KCT P CP+KKKVERSLDGQ+TEI+YKG HNH 
Sbjct: 247 KPADDGYNWRKYGQKQVKGSDFPRSYYKCTHPACPVKKKVERSLDGQVTEIIYKGQHNHE 306

Query: 159 KPTSTRRSSSSQSMQHSTCANSDLSDQ---SVGPLGNTHTDSFSMQNESSTSFGEDDFVE 215
            P     ++ S       C +SD+++Q   S   L  +  D  + Q  ++    E    E
Sbjct: 307 LPQKRGNNNGS-------CKSSDIANQFQTSNSSLNKSKRDQETSQVTTTEQMSEASDSE 359

Query: 216 QGSPTSNPIGDDDENEPDAKRWKGENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYR 275
           +       +G+  E+EPD KR   E  +   + +  RTV EPRI+VQTTS++D+LDDGYR
Sbjct: 360 EVGNAETSVGERHEDEPDPKRRNTEVRVSEPVASSHRTVTEPRIIVQTTSEVDLLDDGYR 419

Query: 276 WRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVPAARGS 335
           WRKYGQKVVKGNP PRSYYKCTT  C VRKHVERA+ D +AV+TTYEGKHNHDVPAAR S
Sbjct: 420 WRKYGQKVVKGNPYPRSYYKCTTPDCGVRKHVERAATDPKAVVTTYEGKHNHDVPAARTS 479

Query: 336 GYTLTRPLPNTNTGNV 351
            + L RP    NT  V
Sbjct: 480 SHQL-RPNNQHNTSTV 494

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C5T3|WRK26_ARATH Probable WRKY transcription factor 26 OS=Arabidopsis thaliana GN=WRKY26 PE=2 SV=2

 Score =  261 bits (668), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 139/236 (58%), Positives = 155/236 (65%), Gaps = 54/236 (22%)

Query: 99  KRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSL-DGQITEIVYKGSHNH 157
           K S+DGYNWRKYGQKQVKGSENPRSYFKCT+P+C  KKKVE SL  GQ+ EIVYKGSHNH
Sbjct: 114 KTSDDGYNWRKYGQKQVKGSENPRSYFKCTYPNCLTKKKVETSLVKGQMIEIVYKGSHNH 173

Query: 158 PKPTSTRRSSSSQSMQHSTCANSDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQG 217
           PKP ST+RSSS+    H   +N D                           G+D      
Sbjct: 174 PKPQSTKRSSSTAIAAHQNSSNGD---------------------------GKD------ 200

Query: 218 SPTSNPIGDDDENEPDAKRWKGENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWR 277
                 IG+D   E +AKRWK E +           V+EPR+VVQTTSDIDILDDGYRWR
Sbjct: 201 ------IGED---ETEAKRWKREEN-----------VKEPRVVVQTTSDIDILDDGYRWR 240

Query: 278 KYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVPAAR 333
           KYGQKVVKGNPNPRSYYKCT TGC VRKHVERA  D ++VITTYEGKH H +P  R
Sbjct: 241 KYGQKVVKGNPNPRSYYKCTFTGCFVRKHVERAFQDPKSVITTYEGKHKHQIPTPR 296

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XI90|WRKY4_ARATH Probable WRKY transcription factor 4 OS=Arabidopsis thaliana GN=WRKY4 PE=1 SV=2

 Score =  261 bits (668), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 135/248 (54%), Positives = 166/248 (66%), Gaps = 21/248 (8%)

Query: 99  KRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHP 158
           K ++DGYNWRKYGQKQVKGSE PRSY+KCT P CP+KKKVERSLDGQ+TEI+YKG HNH 
Sbjct: 226 KPADDGYNWRKYGQKQVKGSEFPRSYYKCTNPGCPVKKKVERSLDGQVTEIIYKGQHNHE 285

Query: 159 KPTSTRRSSSSQSMQHSTCANSDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGS 218
            P +T+R +   +   +  + ++    S   LG +    F   + + T   + + V Q +
Sbjct: 286 PPQNTKRGNKDNTANINGSSINNNRGSSE--LGASQ---FQTNSSNKTKREQHEAVSQAT 340

Query: 219 PTSN---------------PIGDDDENEPDAKRWKGENDI-EGVIGTGSRTVREPRIVVQ 262
            T +                + + DENEPD KR   E  I E       RTV EPRI+VQ
Sbjct: 341 TTEHLSEASDGEEVGNGETDVREKDENEPDPKRRSTEVRISEPAPAASHRTVTEPRIIVQ 400

Query: 263 TTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYE 322
           TTS++D+LDDGYRWRKYGQKVVKGNP PRSYYKCTT GC VRKHVERA+ D +AV+TTYE
Sbjct: 401 TTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYE 460

Query: 323 GKHNHDVP 330
           GKHNHD+P
Sbjct: 461 GKHNHDLP 468

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WV0|WRK20_ARATH Probable WRKY transcription factor 20 OS=Arabidopsis thaliana GN=WRKY20 PE=2 SV=1

 Score =  256 bits (654), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 128/239 (53%), Positives = 166/239 (69%), Gaps = 7/239 (2%)

Query: 101 SEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKP 160
           ++DGYNWRKYGQK VKGSE PRSY+KCT P+C +KK  ERS DGQIT+I+YKG+H+HPKP
Sbjct: 210 ADDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITDIIYKGTHDHPKP 269

Query: 161 TSTRRSSSSQSMQHSTC----ANSDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQ 216
              RR+S   + Q        +++   ++  G    ++ +  +   E       DD  E 
Sbjct: 270 QPGRRNSGGMAAQEERLDKYPSSTGRDEKGSGVYNLSNPNEQTGNPEVPPISASDDGGEA 329

Query: 217 GSPTSNPIGDDDENEPDAKRWKGENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRW 276
            +   N   + D+++P +KR + E  +E  I    + +REPR+VVQT S++DILDDGYRW
Sbjct: 330 AASNRN-KDEPDDDDPFSKRRRMEGAME--ITPLVKPIREPRVVVQTLSEVDILDDGYRW 386

Query: 277 RKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVPAARGS 335
           RKYGQKVV+GNPNPRSYYKCT  GCPVRKHVERASHD +AVITTYEGKH+HDVP ++ S
Sbjct: 387 RKYGQKVVRGNPNPRSYYKCTAHGCPVRKHVERASHDPKAVITTYEGKHDHDVPTSKSS 445

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FG77|WRKY2_ARATH Probable WRKY transcription factor 2 OS=Arabidopsis thaliana GN=WRKY2 PE=2 SV=1

 Score =  253 bits (645), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 139/279 (49%), Positives = 165/279 (59%), Gaps = 47/279 (16%)

Query: 101 SEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKP 160
           +EDGYNWRKYGQK VKGSE PRSY+KCT P+C +KKKVERS +G ITEI+YKG+HNH KP
Sbjct: 272 AEDGYNWRKYGQKLVKGSEYPRSYYKCTNPNCQVKKKVERSREGHITEIIYKGAHNHLKP 331

Query: 161 TSTRRSSSSQSMQHSTCANSDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDF------- 213
              RRS                 D +   +   +T      NE++   G   F       
Sbjct: 332 PPNRRSGMQVDGTEQVEQQQQQRDSAATWVSCNNTQQQGGSNENNVEEGSTRFEYGNQSG 391

Query: 214 ---------VEQGSPT----SNPIGDDDENEPD--------------------------A 234
                     E G P     ++    +DE+E D                          +
Sbjct: 392 SIQAQTGGQYESGDPVVVVDASSTFSNDEDEDDRGTHGSVSLGYDGGGGGGGGEGDESES 451

Query: 235 KRWKGENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYY 294
           KR K E     + G+ +R +REPR+VVQTTSD+DILDDGYRWRKYGQKVVKGNPNPRSYY
Sbjct: 452 KRRKLEAFAAEMSGS-TRAIREPRVVVQTTSDVDILDDGYRWRKYGQKVVKGNPNPRSYY 510

Query: 295 KCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVPAAR 333
           KCT  GC VRKHVERASHD+++VITTYEGKHNHDVPAAR
Sbjct: 511 KCTAPGCTVRKHVERASHDLKSVITTYEGKHNHDVPAAR 549

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|O22921|WRK25_ARATH Probable WRKY transcription factor 25 OS=Arabidopsis thaliana GN=WRKY25 PE=1 SV=1

 Score =  250 bits (638), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 152/329 (46%), Positives = 195/329 (59%), Gaps = 38/329 (11%)

Query: 4   NNYFDFSFQTQTRPSSNSVSVEESVKRQQEPWNFNKPTKESDFSTENPGVKSEFAPMESF 63
           NN+ DF +Q Q++PS+ S +++E+                        GV+      E  
Sbjct: 99  NNHSDFPWQLQSQPSNASSALQETY-----------------------GVQDHEKKQEMI 135

Query: 64  SSDMASYQTNVQSNAAPQSGNYGHYNQSSAYTREQKRSEDGYNWRKYGQKQVKGSENPRS 123
            +++A+ Q N QS    +      Y  S       + S DGY WRKYGQKQVK SENPRS
Sbjct: 136 PNEIAT-QNNNQSFGTERQIKIPAYMVS-------RNSNDGYGWRKYGQKQVKKSENPRS 187

Query: 124 YFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKPTSTRRSSSSQSMQHSTCANSDLS 183
           YFKCT+PDC  KK VE + DGQITEI+YKG HNHPKP  T+R S S S+  S       +
Sbjct: 188 YFKCTYPDCVSKKIVETASDGQITEIIYKGGHNHPKPEFTKRPSQS-SLPSSVNGRRLFN 246

Query: 184 DQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSPTSNPIGDDDENEPDAKRWKGENDI 243
             SV  +   H  S      SS SF   D  ++   +     D++E +P+ KR K E + 
Sbjct: 247 PASV--VSEPHDQS----ENSSISFDYSDLEQKSFKSEYGEIDEEEEQPEMKRMKREGED 300

Query: 244 EGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPV 303
           EG+    S+ V+EPR+VVQT SDID+L DG+RWRKYGQKVVKGN NPRSYYKCT  GC V
Sbjct: 301 EGMSIEVSKGVKEPRVVVQTISDIDVLIDGFRWRKYGQKVVKGNTNPRSYYKCTFQGCGV 360

Query: 304 RKHVERASHDMRAVITTYEGKHNHDVPAA 332
           +K VER++ D RAV+TTYEG+HNHD+P A
Sbjct: 361 KKQVERSAADERAVLTTYEGRHNHDIPTA 389

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|O65590|WRK34_ARATH Probable WRKY transcription factor 34 OS=Arabidopsis thaliana GN=WRKY34 PE=2 SV=1

 Score =  239 bits (609), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 136/267 (50%), Positives = 165/267 (61%), Gaps = 33/267 (12%)

Query: 101 SEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKP 160
           ++DGYNWRKYGQK VKGSE PRSY+KCT P+C  KKKVERS +G I EI+Y G H H KP
Sbjct: 177 ADDGYNWRKYGQKLVKGSEYPRSYYKCTHPNCEAKKKVERSREGHIIEIIYTGDHIHSKP 236

Query: 161 TSTRRSS-----SSQSMQ-----HSTCANSDLSDQSVGPLG-----NTHTDSFSMQNESS 205
              RRS      + Q MQ     +   A ++ + +   P+       +H+ S  +QN  +
Sbjct: 237 PPNRRSGIGSSGTGQDMQIDATEYEGFAGTNENIEWTSPVSAELEYGSHSGSMQVQN-GT 295

Query: 206 TSFG--------------EDDFVEQGSPTSNPIGDDDENEPDAKRWKGENDIEGVIGTGS 251
             FG              EDD     S +    G+ +E+E  +KR K E       G+ +
Sbjct: 296 HQFGYGDAAADALYRDENEDDRTSHMSVSLTYDGEVEESE--SKRRKLEAYATETSGS-T 352

Query: 252 RTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERAS 311
           R  REPR+VVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCT  GC V KHVERAS
Sbjct: 353 RASREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTANGCTVTKHVERAS 412

Query: 312 HDMRAVITTYEGKHNHDVPAARGSGYT 338
            D ++V+TTY GKH H VPAAR S + 
Sbjct: 413 DDFKSVLTTYIGKHTHVVPAARNSSHV 439

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WU7|WRK58_ARATH Probable WRKY transcription factor 58 OS=Arabidopsis thaliana GN=WRKY58 PE=2 SV=2

 Score =  226 bits (575), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 126/232 (54%), Positives = 153/232 (65%), Gaps = 30/232 (12%)

Query: 99  KRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHP 158
           K ++DGYNWRKYGQK +KG E PRSY+KCT  +CP+KKKVERS DGQIT+I+YKG H+H 
Sbjct: 164 KPADDGYNWRKYGQKPIKGCEYPRSYYKCTHVNCPVKKKVERSSDGQITQIIYKGQHDHE 223

Query: 159 KPTSTRRSSSSQSMQHSTCANSDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGS 218
           +P + R      S +             VG  G           ESS    +D    +  
Sbjct: 224 RPQNRRGGGGRDSTE-------------VGGAGQ--------MMESS----DDSGYRKDH 258

Query: 219 PTSNPIGDDDENEPDAKRWKGENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRK 278
              +   +DDE+ P +K  +    I+GV  T  RTV EP+I+VQT S++D+LDDGYRWRK
Sbjct: 259 DDDDDDDEDDEDLPASKIRR----IDGV-STTHRTVTEPKIIVQTKSEVDLLDDGYRWRK 313

Query: 279 YGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVP 330
           YGQKVVKGNP+PRSYYKCTT  C VRKHVERAS D +AVITTYEGKHNHDVP
Sbjct: 314 YGQKVVKGNPHPRSYYKCTTPNCTVRKHVERASTDAKAVITTYEGKHNHDVP 365

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SI37|WRKY1_ARATH WRKY transcription factor 1 OS=Arabidopsis thaliana GN=WRKY1 PE=1 SV=1

 Score =  209 bits (533), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 133/308 (43%), Positives = 168/308 (54%), Gaps = 46/308 (14%)

Query: 55  SEFAPMESFSSDMASYQTNVQSNAAPQSGNYGHYNQSSAYTREQKRSEDGYNWRKYGQKQ 114
           SE AP  S SS   S Q+  + N              S + RE K  EDGYNWRKYGQK 
Sbjct: 79  SEKAPKVSESSGALSLQSGSEGN--------------SPFIRE-KVMEDGYNWRKYGQKL 123

Query: 115 VKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKPTS------------ 162
           VKG+E  RSY++CT P+C  KK++ERS  GQ+ + VY G H+HPKP +            
Sbjct: 124 VKGNEFVRSYYRCTHPNCKAKKQLERSAGGQVVDTVYFGEHDHPKPLAGAVPINQDKRSD 183

Query: 163 --TRRSSSSQ-----SMQHSTCANS-DL------SDQSVGPLGNTHTDSFSMQNESSTSF 208
             T  S   Q     S+ +  C  S D+      S  SV  L  T           S   
Sbjct: 184 VFTAVSKGEQRIDIVSLIYKLCIVSYDIMFVEKTSGSSVQTLRQTEPPKIHGGLHVSVIP 243

Query: 209 GEDDFVEQGSPTSNPIGDD---DENEPDAKRWKGENDIEGVIGTGSRTVREPRIVVQTTS 265
             DD     S +S   GD+   D N P AKR K   +IE  +    R+  + RIVV T +
Sbjct: 244 PADDVKTDISQSSRITGDNTHKDYNSPTAKRRKKGGNIE--LSPVERSTNDSRIVVHTQT 301

Query: 266 DIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKH 325
             DI++DGYRWRKYGQK VKG+P PRSYY+C++ GCPV+KHVER+SHD + +ITTYEGKH
Sbjct: 302 LFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKH 361

Query: 326 NHDVPAAR 333
           +HD+P  R
Sbjct: 362 DHDMPPGR 369

Transcription factor. Binds to a 5'-CGTTGACCGAG-3' consensus core sequence which contains a W box, a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	446
409923417	587	WRKY transcription factor 17 [Dimocarpus	0.984	0.747	0.773	0.0
224140533	534	predicted protein [Populus trichocarpa]	0.964	0.805	0.635	1e-153
259121399	579	WRKY transcription factor 17 [(Populus t	0.964	0.742	0.631	1e-150
255571505	558	transcription factor, putative [Ricinus	0.890	0.711	0.622	1e-146
225434421	603	PREDICTED: probable WRKY transcription f	0.977	0.723	0.584	1e-139
183979108	603	DNA-binding protein [Vitis thunbergii]	0.977	0.723	0.584	1e-139
225439574	552	PREDICTED: probable WRKY transcription f	0.921	0.744	0.607	1e-138
297735598	513	unnamed protein product [Vitis vinifera]	0.921	0.801	0.607	1e-138
356568170	540	PREDICTED: probable WRKY transcription f	0.961	0.794	0.586	1e-135
302399143	520	WRKY domain class transcription factor [	0.858	0.736	0.634	1e-134

>gi|409923417|gb|AEO31478.2| WRKY transcription factor 17 [Dimocarpus longan]

 Score =  692 bits (1787), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/446 (77%), Positives = 379/446 (84%), Gaps = 7/446 (1%)

Query: 2   EENNYFDFSFQTQTRPSSNSVSVEESVKRQQEPWNFNKPTKESDFSTENPGVKSEFAPME 61
           EEN++FDFSFQTQ RPSS  VSVEES KRQQE WNFNKP+K+ DFS E  G+KSEFAP +
Sbjct: 146 EENSFFDFSFQTQPRPSSTIVSVEESTKRQQESWNFNKPSKQPDFSVEKSGMKSEFAPTQ 205

Query: 62  SFSSDMASYQTNVQSNAAPQSGNYGHYNQSSAYTREQKRSEDGYNWRKYGQKQVKGSENP 121
           SFSS+MAS+Q+N+QSN APQSG Y HY+QS+ YTREQKR+EDGYNWRKYGQKQVKGSENP
Sbjct: 206 SFSSEMASFQSNMQSNTAPQSG-YSHYSQSTQYTREQKRAEDGYNWRKYGQKQVKGSENP 264

Query: 122 RSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKPTSTRRSSSSQSMQHSTCANSD 181
           RSY+KCT+PDCP KKKVERSLDGQITEIVYKGSHNHPKP STRRSSS  SMQ STCANS+
Sbjct: 265 RSYYKCTYPDCPTKKKVERSLDGQITEIVYKGSHNHPKPQSTRRSSS-HSMQPSTCANSE 323

Query: 182 LSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSPTSNPIGDDDENEPDAKRWKGEN 241
           +SDQSVG L N   +SFSMQ +SS SFGED + +QGSPTSNP  DDDENEP+AKRWKGEN
Sbjct: 324 ISDQSVGALANAQNESFSMQGDSSASFGEDSY-DQGSPTSNPGADDDENEPEAKRWKGEN 382

Query: 242 DIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGC 301
           DIEG IGTGSR VREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTT GC
Sbjct: 383 DIEGAIGTGSRXVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTIGC 442

Query: 302 PVRKHVERASHDMRAVITTYEGKHNHDVPAARGSGYTLTRPLPN-TNTGNVPVPIRPSVT 360
           PVRKHVE ASHD RAVITTYEGKHNHDVPAARGSGYTLTRP PN   T  VP+PIRPSV+
Sbjct: 443 PVRKHVEXASHDTRAVITTYEGKHNHDVPAARGSGYTLTRPSPNPPTTSTVPIPIRPSVS 502

Query: 361 AMASHSNLSNYSNSLNNTRFPSSSGSQAPYTAAMLQ-STGSYGISGFAKPTGSYMMNQTQ 419
           AMA+HS+ S+YSNSL N R P+SS SQAP+T+ M Q S          +P  SY MNQ Q
Sbjct: 503 AMANHSHPSSYSNSLQNARLPTSS-SQAPFTSEMPQSSGSFGFSGFGGRPNNSY-MNQIQ 560

Query: 420 QSDGLFNRAKDEPRDDLFLESFLNSN 445
           QSD +F RAK+EPR+D F ESFLNSN
Sbjct: 561 QSDNVFFRAKEEPREDSFFESFLNSN 586

Source: Dimocarpus longan

Species: Dimocarpus longan

Genus: Dimocarpus

Family: Sapindaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140533|ref|XP_002323637.1| predicted protein [Populus trichocarpa] gi|222868267|gb|EEF05398.1| predicted protein [Populus trichocarpa]

 Score =  546 bits (1408), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 288/453 (63%), Positives = 347/453 (76%), Gaps = 23/453 (5%)

Query: 2   EENNYFDFSFQTQTRPSS----------NSVSVEESVKRQQEPWNFNKPTKESDFSTENP 51
           EE NY DFSF TQTRP +          NSV+VE+S+KR+QE WNF++  K++DFS++  
Sbjct: 94  EEKNYSDFSFPTQTRPPAISSSFFQSSSNSVTVEKSLKRKQEEWNFDQ-LKQTDFSSDQK 152

Query: 52  -GVKSEFAPMESFSSDMASYQTNVQSNAAPQSGNYGHYNQSSAYTREQKRSEDGYNWRKY 110
            GVKSEFAP +SFSS++   Q N+QS       ++  YNQS+ Y RE KRS+DGYNWRKY
Sbjct: 153 TGVKSEFAPEQSFSSELVPLQANMQSVNTAAQPSFNQYNQSAHYMRENKRSDDGYNWRKY 212

Query: 111 GQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKPTSTRRSSSSQ 170
           GQKQVKGSENPRSY+KCT+P+CP KKKVERSLDGQITEIVYKGSHNHPK   + R SSSQ
Sbjct: 213 GQKQVKGSENPRSYYKCTYPNCPTKKKVERSLDGQITEIVYKGSHNHPK-LQSSRRSSSQ 271

Query: 171 SMQHSTCANSDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSPTSNPIGDDDEN 230
            +Q S  A+S++SDQS+ P+     +S  MQ +SS S GED+F +  S  S    +D+ N
Sbjct: 272 LVQPSGGASSEISDQSIAPI-----ESSMMQEDSSISLGEDEFDQSSSMNSGE--EDNAN 324

Query: 231 EPDAKRWKGENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNP 290
           EPDAKRW+G+N+ E ++G GSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNP
Sbjct: 325 EPDAKRWQGQNENESILGAGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNP 384

Query: 291 RSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVPAARGSGYTLTRPLPNTNTGN 350
           RSYYKCT+ GCPVRKHVERAS D+RAVITTYEGKHNHDVPAARGSGY    P    +T N
Sbjct: 385 RSYYKCTSVGCPVRKHVERASQDLRAVITTYEGKHNHDVPAARGSGYMNKAPSIANSTAN 444

Query: 351 VPVPIRPSVTAMASHSNLSNYSNSLNNTRFPSSSGSQAPYTAAMLQSTGSYGISGFAKPT 410
            P+PIRPSV  MA+HSN ++Y NSL++TR   +SGSQAP+T  MLQ  GS+  S F K  
Sbjct: 445 APIPIRPSV--MANHSNQTSYPNSLHSTRSLPASGSQAPFTLEMLQGQGSFEYSSFGKQN 502

Query: 411 GSYMMNQTQQSDGLFNRAKDEPRDDLFLESFLN 443
           G+Y MNQTQ S+G+F RAK+EP++D F + FLN
Sbjct: 503 GTY-MNQTQYSEGVFPRAKEEPKNDSFFDPFLN 534

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|259121399|gb|ACV92019.1| WRKY transcription factor 17 [(Populus tomentosa x P. bolleana) x P. tomentosa]

 Score =  539 bits (1388), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 286/453 (63%), Positives = 344/453 (75%), Gaps = 23/453 (5%)

Query: 2   EENNYFDFSFQTQTRPSS----------NSVSVEESVKRQQEPWNFNKPTKESDFSTENP 51
           +E NY DFSF TQTRP +          NSV+VE+S+KR+QE WNF++  K++DFS++  
Sbjct: 139 QEKNYSDFSFPTQTRPPAISSSFFQSSSNSVTVEKSLKRKQEEWNFDQ-LKQTDFSSDQK 197

Query: 52  -GVKSEFAPMESFSSDMASYQTNVQSNAAPQSGNYGHYNQSSAYTREQKRSEDGYNWRKY 110
            GVKSEFAP +SFSS++   Q N+QS       ++  YNQS+ Y RE K+S+DGYNWRKY
Sbjct: 198 TGVKSEFAPEQSFSSELGPLQANMQSVNTAAQPSFNQYNQSAHYMRENKKSDDGYNWRKY 257

Query: 111 GQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKPTSTRRSSSSQ 170
           GQKQVKGSENPRSY+KCT+P+CP KKKVERSLDGQITEIVYKGSHNHPK   + R SSSQ
Sbjct: 258 GQKQVKGSENPRSYYKCTYPNCPTKKKVERSLDGQITEIVYKGSHNHPK-LQSSRRSSSQ 316

Query: 171 SMQHSTCANSDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSPTSNPIGDDDEN 230
            +Q S  A+S++SDQSV P+     +S  MQ +SS S GED+F +  S  S    +D+ N
Sbjct: 317 LVQPSGGASSEISDQSVAPV-----ESSMMQEDSSISLGEDEFDQSSSMNSGE--EDNAN 369

Query: 231 EPDAKRWKGENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNP 290
           EPDAKRW+G+N+ E ++G GSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNP
Sbjct: 370 EPDAKRWQGQNENESILGAGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNP 429

Query: 291 RSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVPAARGSGYTLTRPLPNTNTGN 350
           RSYYKCT+ GCPVRKHV RAS D+RAVITTYEGKHNHDVPAARGSGY    P     T N
Sbjct: 430 RSYYKCTSVGCPVRKHVGRASQDLRAVITTYEGKHNHDVPAARGSGYMNKAPSITNITAN 489

Query: 351 VPVPIRPSVTAMASHSNLSNYSNSLNNTRFPSSSGSQAPYTAAMLQSTGSYGISGFAKPT 410
            P+PIRPSV  MA+HSN ++Y NSL+ TR   +SG QAP+T  MLQS GS+  S F K  
Sbjct: 490 APIPIRPSV--MANHSNQTSYPNSLHGTRSLPASGIQAPFTLEMLQSQGSFEYSSFGKQN 547

Query: 411 GSYMMNQTQQSDGLFNRAKDEPRDDLFLESFLN 443
           G+Y MNQTQ S+G+F RAK+EP++D F + FLN
Sbjct: 548 GTY-MNQTQYSEGVFPRAKEEPKNDSFFDPFLN 579

Source: (Populus tomentosa x P. bolleana) x P. tomentosa

Species: (Populus tomentosa x P. bolleana) x P. tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255571505|ref|XP_002526700.1| transcription factor, putative [Ricinus communis] gi|223534000|gb|EEF35722.1| transcription factor, putative [Ricinus communis]

 Score =  523 bits (1346), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 277/445 (62%), Positives = 334/445 (75%), Gaps = 48/445 (10%)

Query: 2   EENNYFDFSFQTQTRP--SSNSVSVEESVKRQQEPWNFNKPTKESDFSTENPGVKSEFAP 59
           +E  Y DFSFQTQTRP  +S+S   E+ V                        VK EF P
Sbjct: 157 DEKTYSDFSFQTQTRPLLASSSSPSEKGV------------------------VKQEFTP 192

Query: 60  MESFSSDMASYQTNVQSNA-APQ-SGNYGHYNQSSAYTREQKRSEDGYNWRKYGQKQVKG 117
           ++SFSS+MA  Q+++Q+NA APQ   +Y HY+Q ++Y REQ+RS+DGYNWRKYGQKQVKG
Sbjct: 193 VQSFSSEMAPLQSSMQTNAVAPQPQPSYNHYSQPASYMREQRRSDDGYNWRKYGQKQVKG 252

Query: 118 SENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKPTSTRRSSSSQSMQHSTC 177
           SENPRSY+KCT+P+CP KKKVERSLDGQITEIVYKGSHNHPKP +    SSSQ +Q +  
Sbjct: 253 SENPRSYYKCTYPNCPTKKKVERSLDGQITEIVYKGSHNHPKPQA---RSSSQLIQLAAG 309

Query: 178 ANSDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSPTSNPIGDDDENEPDAKRW 237
              ++SDQS  P+     +S +MQ +SS S G+D+F +Q SP SN  G++DENEP+AKR+
Sbjct: 310 GTQEISDQSFAPV-----ESVTMQEDSSLSIGDDEF-DQSSPISNSGGNEDENEPEAKRF 363

Query: 238 KGENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCT 297
           KG+N+ E ++  GSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCT
Sbjct: 364 KGQNENESILAAGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCT 423

Query: 298 TTGCPVRKHVERASHDMRAVITTYEGKHNHDVPAARGSGYTLTRPLPNTNTGNVPVPIRP 357
           + GCPVRKHVERASHD RAVITTYEGKHNHDVPAARGSGY   R LP     ++P+PIRP
Sbjct: 424 SIGCPVRKHVERASHDTRAVITTYEGKHNHDVPAARGSGYASNR-LPVNANSSMPIPIRP 482

Query: 358 SVTAMASHSNLSNYSNSLNNTRFPSSSGSQAPYTAAMLQSTGSYGISGFAKPTGSYMMNQ 417
           SVTA       +NYSNSLN+TR   SSG+QAP+T  MLQ TG+ G S F KP+ SY MNQ
Sbjct: 483 SVTAN------TNYSNSLNSTR---SSGNQAPFTLQMLQGTGNIGFSNFGKPSASY-MNQ 532

Query: 418 TQQSDGLFNRAKDEPRDDLFLESFL 442
           TQ ++ +F+ AK+EP+DD FL+SFL
Sbjct: 533 TQYTENVFSGAKEEPKDDSFLDSFL 557

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434421|ref|XP_002272040.1| PREDICTED: probable WRKY transcription factor 33-like [Vitis vinifera]

 Score =  503 bits (1294), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 272/465 (58%), Positives = 329/465 (70%), Gaps = 29/465 (6%)

Query: 2   EENNYFDFSFQTQTRPSSNSVSV----------EESVKRQQEPWNFNKPTKESDFSTENP 51
           E+ NY DFSFQ Q RPS+ S S+          E++++ QQ  W+F +PTK+  FS+E  
Sbjct: 143 EDKNYLDFSFQPQARPSTTSASMFQPSTTTITTEQALRGQQPAWSFQEPTKQDSFSSEKT 202

Query: 52  GVKSEFAPMESFSSDMASYQTNVQSNAAPQSG---NYGHYNQSSAYTREQKRSEDGYNWR 108
            VKSEF   +SFS ++A+ QTN QSN    +G   +YG Y+ SS   REQ+RSEDGYNWR
Sbjct: 203 TVKSEFGSYQSFSPEIATIQTNTQSNGNGNNGFQSDYGSYHASSQSIREQRRSEDGYNWR 262

Query: 109 KYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKPTSTRRSSS 168
           KYGQKQVKGSENPRSY+KCT+P+CP KKKVERSL+GQ+TEIVYKG+HNHPKP STRRSS 
Sbjct: 263 KYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSLEGQVTEIVYKGTHNHPKPQSTRRSSL 322

Query: 169 SQS--MQHSTCANSDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSPTSNPIGD 226
           S S  +Q S   N+++ DQ     G    DS +    SS S G+DDF EQ S  S   GD
Sbjct: 323 SSSQTIQASNPPNNEVPDQPFVAHGTGQMDSVATPENSSISMGDDDF-EQSSQKSKSGGD 381

Query: 227 D-DENEPDAKRWKGENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVK 285
           D DE+EP+AKRWK E++ EG+   GSRTVREPR+VVQTTSDIDILDDGYRWRKYGQKVVK
Sbjct: 382 DFDEDEPEAKRWKKESENEGISAPGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVK 441

Query: 286 GNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVPAARGSG-YTLTRPLP 344
           GNPNPRSYYKCT  GCPVRKHVERASHD+RAVITTYEGKHNHDVPAARGSG +++ RPLP
Sbjct: 442 GNPNPRSYYKCTNPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGSHSVNRPLP 501

Query: 345 -------NTNTGNVPVPIRPSVTAMASHSNLSNYSNSLNNTRFPSSSGSQAPYTAAMLQS 397
                   T   N+P+ IRPS+    +H   ++ +N L + R P+S    AP+T  MLQS
Sbjct: 502 LPDTTAAATTNNNMPMAIRPSI---MTHLPNNSTTNPLRHVRHPTSEAQAAPFTLEMLQS 558

Query: 398 TGSYGISGFAKPTGSYMMNQTQQSDGLFNRAKDEPRDDLFLESFL 442
              +G S F     +Y MNQ Q  D +F+R K+EPRDD+  ES L
Sbjct: 559 PDGFGFSSFGNSMATY-MNQPQHQDNVFSRTKEEPRDDMLFESLL 602

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|183979108|emb|CAP08303.1| DNA-binding protein [Vitis thunbergii]

 Score =  501 bits (1289), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 272/465 (58%), Positives = 328/465 (70%), Gaps = 29/465 (6%)

Query: 2   EENNYFDFSFQTQTRPSSNSVSV----------EESVKRQQEPWNFNKPTKESDFSTENP 51
           E+ NY DFSFQ Q RPS+ S S+          E++++ QQ  W+F +PTK+  FS+E  
Sbjct: 143 EDKNYLDFSFQPQARPSTTSASMFQPSTTTITTEQALRGQQPAWSFQEPTKQDSFSSEKT 202

Query: 52  GVKSEFAPMESFSSDMASYQTNVQSNAAPQSG---NYGHYNQSSAYTREQKRSEDGYNWR 108
            VKSEF   +SFS ++A+ QTN QSN    +G   +YG Y+ SS   REQ+RSEDGYNWR
Sbjct: 203 TVKSEFGSYQSFSPEIATIQTNTQSNGNGNNGFQSDYGSYHASSQSIREQRRSEDGYNWR 262

Query: 109 KYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKPTSTRRSSS 168
           KYGQKQVKGSENPRSY+KCT+P+CP KKKVERSL+GQ+TEIVYKG+HNHPKP STRRSS 
Sbjct: 263 KYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSLEGQVTEIVYKGTHNHPKPQSTRRSSL 322

Query: 169 SQS--MQHSTCANSDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSPTSNPIGD 226
           S S  +Q S   N+++ DQ     G    DS +    SS S G+DDF EQ S  S   GD
Sbjct: 323 SSSQTIQASNPPNNEVPDQPFVAHGTGQMDSVATPENSSISMGDDDF-EQSSQKSKSGGD 381

Query: 227 D-DENEPDAKRWKGENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVK 285
           D DE+EP+AKRWK E++ EG+   GSRTVREPR+VVQTTSDIDILDDGYRWRKYGQKVVK
Sbjct: 382 DFDEDEPEAKRWKKESENEGISAPGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVK 441

Query: 286 GNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVPAARGSG-YTLTRPLP 344
           GNPNPRSYYKCT  GCPVRKHVERASHD+RAVITTYEGKHNHDVPAARGSG +++ RPLP
Sbjct: 442 GNPNPRSYYKCTNPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGSHSVNRPLP 501

Query: 345 -------NTNTGNVPVPIRPSVTAMASHSNLSNYSNSLNNTRFPSSSGSQAPYTAAMLQS 397
                   T   N+P+ IRPS     +H   ++ +N L + R P+S    AP+T  MLQS
Sbjct: 502 LPDTTAAATTNNNMPMAIRPST---MTHLPNNSTTNPLRHVRHPTSEAQAAPFTLEMLQS 558

Query: 398 TGSYGISGFAKPTGSYMMNQTQQSDGLFNRAKDEPRDDLFLESFL 442
              +G S F     +Y MNQ Q  D +F+R K+EPRDD+  ES L
Sbjct: 559 PDGFGFSNFGNSMATY-MNQPQHQDNVFSRTKEEPRDDMLFESLL 602

Source: Vitis thunbergii

Species: Vitis thunbergii

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439574|ref|XP_002264974.1| PREDICTED: probable WRKY transcription factor 33-like [Vitis vinifera]

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 266/438 (60%), Positives = 320/438 (73%), Gaps = 27/438 (6%)

Query: 6   YFDFSFQTQTRPSSNSVSVEESVKRQQEPWNFNKPTKESDFSTENPGVKSEFAPMESFSS 65
           + D  FQ+QTRPS       E++K  Q PWN +KP K++ F  E  GVKSEFA ++S S 
Sbjct: 141 FSDLLFQSQTRPSGG-----EALK-TQAPWNSDKPEKQTHFPQEKTGVKSEFASLQSLSP 194

Query: 66  DMASYQTNVQSNAAPQSGNYGHYNQSSAYTREQKRSEDGYNWRKYGQKQVKGSENPRSYF 125
           ++AS QTN+QSN  PQSG   H   S +Y REQ+RS+DGYNWRKYGQKQVKGSENPRSY+
Sbjct: 195 EIASIQTNMQSNNIPQSGRSHHAQPSESY-REQRRSDDGYNWRKYGQKQVKGSENPRSYY 253

Query: 126 KCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKPTSTRRSSSSQSMQHSTCANSDLSDQ 185
           KCTFP+CP KKKVERSL+G ITEIVYKG+H+HPKP   R SS S     +   NS++S  
Sbjct: 254 KCTFPNCPTKKKVERSLEGHITEIVYKGTHSHPKPQPKRSSSQSFPSAST---NSEISGH 310

Query: 186 SVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSPTSNPIGDDDENEPDAKRWKGENDIEG 245
           S+ P+GN + DS +    SS S GEDDF +Q SP S   G DDENE +AKRWKGE + E 
Sbjct: 311 SM-PIGNPYMDSMTTSENSSVSIGEDDF-DQNSPMSRS-GGDDENEREAKRWKGEYENEA 367

Query: 246 VIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRK 305
           +  + SRTV+EPR+VVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCT+ GCPVRK
Sbjct: 368 ISASESRTVKEPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTSIGCPVRK 427

Query: 306 HVERASHDMRAVITTYEGKHNHDVPAARGSG-YTLTRPLPNTNTGNVPVPIRPSVTAMAS 364
           HVER+S D+RAV+TTYEGKHNHDVPAARGSG + +T+PLPN +T  VP PIRPSV  M +
Sbjct: 428 HVERSSKDIRAVLTTYEGKHNHDVPAARGSGSHFVTKPLPNNSTTTVPAPIRPSV--MTN 485

Query: 365 HSNLSNYSNSLNNTRFPSSSGSQAPYTAAMLQSTGSYGISGFAKPTGSYMMNQTQQSDGL 424
           HSN +  +N+   TR P +S SQAP+T  MLQS GS+G SGF +             DG+
Sbjct: 486 HSNYTT-TNANPQTR-PPTSASQAPFTLEMLQSPGSFGFSGFGR---------MSHPDGV 534

Query: 425 FNRAKDEPRDDLFLESFL 442
           F+R K+EP+DDLF   F 
Sbjct: 535 FSRTKEEPKDDLFQSFFC 552

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735598|emb|CBI18092.3| unnamed protein product [Vitis vinifera]

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 266/438 (60%), Positives = 320/438 (73%), Gaps = 27/438 (6%)

Query: 6   YFDFSFQTQTRPSSNSVSVEESVKRQQEPWNFNKPTKESDFSTENPGVKSEFAPMESFSS 65
           + D  FQ+QTRPS       E++K  Q PWN +KP K++ F  E  GVKSEFA ++S S 
Sbjct: 102 FSDLLFQSQTRPSGG-----EALK-TQAPWNSDKPEKQTHFPQEKTGVKSEFASLQSLSP 155

Query: 66  DMASYQTNVQSNAAPQSGNYGHYNQSSAYTREQKRSEDGYNWRKYGQKQVKGSENPRSYF 125
           ++AS QTN+QSN  PQSG   H   S +Y REQ+RS+DGYNWRKYGQKQVKGSENPRSY+
Sbjct: 156 EIASIQTNMQSNNIPQSGRSHHAQPSESY-REQRRSDDGYNWRKYGQKQVKGSENPRSYY 214

Query: 126 KCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKPTSTRRSSSSQSMQHSTCANSDLSDQ 185
           KCTFP+CP KKKVERSL+G ITEIVYKG+H+HPKP   R SS S     +   NS++S  
Sbjct: 215 KCTFPNCPTKKKVERSLEGHITEIVYKGTHSHPKPQPKRSSSQSFPSAST---NSEISGH 271

Query: 186 SVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSPTSNPIGDDDENEPDAKRWKGENDIEG 245
           S+ P+GN + DS +    SS S GEDDF +Q SP S   G DDENE +AKRWKGE + E 
Sbjct: 272 SM-PIGNPYMDSMTTSENSSVSIGEDDF-DQNSPMSR-SGGDDENEREAKRWKGEYENEA 328

Query: 246 VIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRK 305
           +  + SRTV+EPR+VVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCT+ GCPVRK
Sbjct: 329 ISASESRTVKEPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTSIGCPVRK 388

Query: 306 HVERASHDMRAVITTYEGKHNHDVPAARGSG-YTLTRPLPNTNTGNVPVPIRPSVTAMAS 364
           HVER+S D+RAV+TTYEGKHNHDVPAARGSG + +T+PLPN +T  VP PIRPSV  M +
Sbjct: 389 HVERSSKDIRAVLTTYEGKHNHDVPAARGSGSHFVTKPLPNNSTTTVPAPIRPSV--MTN 446

Query: 365 HSNLSNYSNSLNNTRFPSSSGSQAPYTAAMLQSTGSYGISGFAKPTGSYMMNQTQQSDGL 424
           HSN +  +N+   TR P +S SQAP+T  MLQS GS+G SGF +             DG+
Sbjct: 447 HSNYTT-TNANPQTR-PPTSASQAPFTLEMLQSPGSFGFSGFGR---------MSHPDGV 495

Query: 425 FNRAKDEPRDDLFLESFL 442
           F+R K+EP+DDLF   F 
Sbjct: 496 FSRTKEEPKDDLFQSFFC 513

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568170|ref|XP_003552286.1| PREDICTED: probable WRKY transcription factor 33-like [Glycine max]

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 261/445 (58%), Positives = 330/445 (74%), Gaps = 16/445 (3%)

Query: 2   EENNYFDFSFQTQTRPSSNSVSVEESVKRQQEPWNFNKPTKESDFSTENPGVKSEFAPME 61
           +E NY DFSFQTQ + S N    +E +K+Q + W FN+PTK+SDFS+E    KSE+  ++
Sbjct: 104 DEKNYSDFSFQTQIQSSLNMFQ-QEPLKKQ-DMWKFNEPTKQSDFSSERTATKSEYPSIQ 161

Query: 62  SFSSDMASYQTNVQSNAAPQSGNYGHYNQSSAYTREQKRSEDGYNWRKYGQKQVKGSENP 121
            FSS+MA+ +  +QSN+ P SG Y  Y  +S   REQKR+EDG+NWRKYGQKQVKGSENP
Sbjct: 162 KFSSEMAAGKPEIQSNSVPGSG-YFDYTSASLSVREQKRAEDGFNWRKYGQKQVKGSENP 220

Query: 122 RSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKPTSTRRSSSSQSMQH--STCAN 179
           RSY+KCT P+C +KKKVE++L+GQITEIVYKG HNHPK  STRR++S QS+    S+C N
Sbjct: 221 RSYYKCTHPNCSVKKKVEKTLEGQITEIVYKGQHNHPKLQSTRRTNS-QSINQPSSSCTN 279

Query: 180 SDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSPTSNPIGDDDENEPDAKRWKG 239
           S +SDQSV  LGN   D FS+Q +SS S GE++F EQ S TS   GD+D   PDAKRWK 
Sbjct: 280 SGISDQSVVTLGNPQMDHFSIQEDSSASVGEENF-EQTSQTSYSGGDEDNLGPDAKRWKE 338

Query: 240 ENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTT 299
           +N  +G   +GSRTVREPR+VVQTTS+IDILDDG+RWRKYGQKVVKGNPN RSYYKCT  
Sbjct: 339 DNKNDGYSVSGSRTVREPRVVVQTTSEIDILDDGFRWRKYGQKVVKGNPNARSYYKCTAP 398

Query: 300 GCPVRKHVERASHDMRAVITTYEGKHNHDVPAARGSG-YTLTRPLPNTNTGNVPVPIRPS 358
           GC VRKHVERA+HD++AVITTYEGKHNHDVPAARGSG Y + R   N+   ++P PIRPS
Sbjct: 399 GCSVRKHVERAAHDIKAVITTYEGKHNHDVPAARGSGNYYMNR---NSLNSSIPAPIRPS 455

Query: 359 VTAMASHSNLSNYSNSL-NNTRFPSSSGSQAPYTAAMLQSTGSYGISGFAKPTGSYMMNQ 417
             A+  +SN S+++NSL NNTR P ++G+Q   +    ++ GS+G S   +   S+  +Q
Sbjct: 456 --AVNCYSNSSSFTNSLYNNTRHP-ATGNQESCSLDKFKNPGSFGYSALNRSMSSH-TDQ 511

Query: 418 TQQSDGLFNRAKDEPRDDLFLESFL 442
            Q +D   ++AKDE +DD FL+SFL
Sbjct: 512 AQYTDAAHSKAKDERKDDSFLQSFL 536

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302399143|gb|ADL36866.1| WRKY domain class transcription factor [Malus x domestica]

 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 260/410 (63%), Positives = 314/410 (76%), Gaps = 27/410 (6%)

Query: 6   YFDFSFQTQTRPSSN------SVSVEESVKRQQEPWNFNKPTKESDFSTENPGVKSEFAP 59
           + DFSFQ ++RP++N       VSVEE  KR+++ W+F+  T+++D S E  GVKSEF P
Sbjct: 129 FSDFSFQPESRPATNLQSASSMVSVEEPFKRERQAWDFST-TRQADSSAEKTGVKSEFEP 187

Query: 60  MESFSSDMASYQTNVQSNAAPQSGNYGHYNQSSAYTREQKRSEDGYNWRKYGQKQVKGSE 119
           +E      A+ Q+N   N AP+S +Y H  QSS Y REQK S+DG+NWRKYGQKQVKGSE
Sbjct: 188 IE------ANTQSNGL-NGAPKS-DYLHSTQSSQYGREQK-SDDGFNWRKYGQKQVKGSE 238

Query: 120 NPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKPTSTRRSSSSQSMQHSTCAN 179
           NPRSY+KCTFP+CP KKKVERSLDGQIT+IVYKGSHNHPKP STRRSSS+ ++Q S+   
Sbjct: 239 NPRSYYKCTFPNCPTKKKVERSLDGQITQIVYKGSHNHPKPQSTRRSSSN-AIQGSSYV- 296

Query: 180 SDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSPTSNPIGDDDENEPDAKRWKG 239
             +SDQSV  L N   +S ++Q +SSTS GED+F EQ SP SN  G +DENEP+AKRWKG
Sbjct: 297 --ISDQSVPTLSNPKVESITLQEDSSTSMGEDEF-EQNSPISNSGGAEDENEPEAKRWKG 353

Query: 240 EN-DIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTT 298
           EN + +  + +GSR V+EPRIVVQTTS+IDILDDGYRWRKYGQKVVKGNPNPRSYYKCT+
Sbjct: 354 ENANDQAYVSSGSRIVKEPRIVVQTTSEIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTS 413

Query: 299 TGCPVRKHVERASHDMRAVITTYEGKHNHDVPAARGSG--YTLTRPLPNTNTGNVPVPIR 356
            GCPVRKHVERASHD +AVITTYEGKHNHDVPAARGSG     +RP  + ++ NV + +R
Sbjct: 414 VGCPVRKHVERASHDTKAVITTYEGKHNHDVPAARGSGNYSNASRPAADNSSNNVSMAVR 473

Query: 357 PSVTAMASHSNLSNYSNSLNNTRFPSSSGSQAPYTAAMLQSTGSYGISGF 406
           P   A+ +HSNL  Y NSL NTR PS++ SQ P+T  MLQS GSYG S F
Sbjct: 474 P--LALPNHSNL-RYLNSLQNTRQPSTTESQPPFTLKMLQSEGSYGFSEF 520

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	446
TAIR|locus:2057212	519	WRKY33 "AT2G38470" [Arabidopsi	0.755	0.649	0.557	1.8e-99
TAIR|locus:2063835	513	WRKY3 "WRKY DNA-binding protei	0.650	0.565	0.493	3.7e-71
TAIR|locus:2177596	687	WRKY2 "WRKY DNA-binding protei	0.343	0.222	0.561	5e-69
TAIR|locus:2014799	514	WRKY4 "WRKY DNA-binding protei	0.665	0.577	0.471	7.2e-68
TAIR|locus:2060805	393	WRKY25 "WRKY DNA-binding prote	0.636	0.722	0.47	8.7e-67
TAIR|locus:2102147	423	WRKY58 "WRKY DNA-binding prote	0.237	0.250	0.722	5.4e-65
TAIR|locus:2133852	557	WRKY20 [Arabidopsis thaliana (	0.520	0.416	0.518	3e-62
TAIR|locus:2131503	568	WRKY34 "WRKY DNA-binding prote	0.280	0.220	0.625	1.4e-59
TAIR|locus:2045049	487	ZAP1 "zinc-dependent activator	0.271	0.248	0.539	5.4e-55
TAIR|locus:2049852	429	TTG2 "TRANSPARENT TESTA GLABRA	0.560	0.582	0.436	2.5e-49

TAIR|locus:2057212 WRKY33 "AT2G38470" [Arabidopsis thaliana (taxid:3702)]

 Score = 963 (344.1 bits), Expect = 1.8e-99, Sum P(2) = 1.8e-99
 Identities = 204/366 (55%), Positives = 241/366 (65%)

Query:    89 NQSSAYT-REQKRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQIT 147
             NQ+ +Y  REQ++ EDGYNWRKYGQKQVKGSENPRSY+KCTFP+CP KKKVERSL+GQIT
Sbjct:   170 NQAVSYNGREQRKGEDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERSLEGQIT 229

Query:   148 EIVYKGSHNHPKPXXXXXXXXXXXXXXXXCANSDLSDQ----SVGPLGNT--H-TDSFSM 200
             EIVYKGSHNHPKP                  N+ L       S  P  N   H +DSF M
Sbjct:   230 EIVYKGSHNHPKPQSTRRSSSSSSTFHSAVYNASLDHNRQASSDQPNSNNSFHQSDSFGM 289

Query:   201 QNESST---SFGEDDFVEQGSPTSNPIGDDDENEPDAKRWKGENDIEGVIGTGSRTVREP 257
             Q E +T   S G+D+F EQGS   +   +D  +EP+AKRWKG+N+  G  G GS+TVREP
Sbjct:   290 QQEDNTTSDSVGDDEF-EQGSSIVSRDEEDCGSEPEAKRWKGDNETNGGNGGGSKTVREP 348

Query:   258 RIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAV 317
             RIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTT GCPVRKHVERASHDMRAV
Sbjct:   349 RIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTIGCPVRKHVERASHDMRAV 408

Query:   318 ITTYEGKHNHDVPAARGSGYTLTRPLPNTNTGNVPVPIRPSVTAMAXXXXXXXXXXXXXX 377
             ITTYEGKHNHDVPAARGSGY   R  P  ++    VPIRP+  A+A              
Sbjct:   409 ITTYEGKHNHDVPAARGSGYATNRA-PQDSSS---VPIRPA--AIAGHSNYTTSSQAPYT 462

Query:   378 TRFPSSSGSQAPYTAAMLQSTGSYGISGFAKPTGSYMMNQTQQSDGLFNRAKDEPRDDL- 436
              +   ++ +          +TG +G +       S +  Q     G F+RAK+EP ++  
Sbjct:   463 LQMLHNNNT----------NTGPFGYAMNNNNNNSNLQTQQNFVGGGFSRAKEEPNEETS 512

Query:   437 FLESFL 442
             F +SF+
Sbjct:   513 FFDSFM 518

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0050832 "defense response to fungus" evidence=RCA;IMP

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0010120 "camalexin biosynthetic process" evidence=IMP

GO:0006970 "response to osmotic stress" evidence=IEP

GO:0009408 "response to heat" evidence=IEP

GO:0009409 "response to cold" evidence=IEP

GO:0009414 "response to water deprivation" evidence=IEP

GO:0009651 "response to salt stress" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0034605 "cellular response to heat" evidence=IMP

GO:0070370 "cellular heat acclimation" evidence=IMP

GO:0010508 "positive regulation of autophagy" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

TAIR|locus:2063835 WRKY3 "WRKY DNA-binding protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 720 (258.5 bits), Expect = 3.7e-71, P = 3.7e-71
 Identities = 150/304 (49%), Positives = 188/304 (61%)

Query:    54 KSEFAPMESFSSDMASY-QTNVQSNAAPQ--SGNYGHYNQSSAYTREQKRSEDGYNWRKY 110
             ++    + SFSS   S  + +VQ  +  Q  +     +   S      K ++DGYNWRKY
Sbjct:   199 QASLTEIPSFSSAPRSQIRASVQETSQGQRETSEISVFEHRSQPQNADKPADDGYNWRKY 258

Query:   111 GQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKPXXXXXXXXXX 170
             GQKQVKGS+ PRSY+KCT P CP+KKKVERSLDGQ+TEI+YKG HNH  P          
Sbjct:   259 GQKQVKGSDFPRSYYKCTHPACPVKKKVERSLDGQVTEIIYKGQHNHELPQKRGNNNGS- 317

Query:   171 XXXXXXCANSDLSDQ---SVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSPTSNPIGDD 227
                   C +SD+++Q   S   L  +  D  + Q  ++    E    E+       +G+ 
Sbjct:   318 ------CKSSDIANQFQTSNSSLNKSKRDQETSQVTTTEQMSEASDSEEVGNAETSVGER 371

Query:   228 DENEPDAKRWKGENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGN 287
              E+EPD KR   E  +   + +  RTV EPRI+VQTTS++D+LDDGYRWRKYGQKVVKGN
Sbjct:   372 HEDEPDPKRRNTEVRVSEPVASSHRTVTEPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGN 431

Query:   288 PNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVPAARGSGYTLTRPLPNTN 347
             P PRSYYKCTT  C VRKHVERA+ D +AV+TTYEGKHNHDVPAAR S + L RP    N
Sbjct:   432 PYPRSYYKCTTPDCGVRKHVERAATDPKAVVTTYEGKHNHDVPAARTSSHQL-RPNNQHN 490

Query:   348 TGNV 351
             T  V
Sbjct:   491 TSTV 494

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2177596 WRKY2 "WRKY DNA-binding protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 439 (159.6 bits), Expect = 5.0e-69, Sum P(3) = 5.0e-69
 Identities = 91/162 (56%), Positives = 114/162 (70%)

Query:   196 DSFSMQNESSTSFGEDDFVEQGSPTSNPIGDD--------DENEPDAKRWKGENDIEGVI 247
             D   + + SST   ++D  ++G+  S  +G D        + +E ++KR K E     + 
Sbjct:   405 DPVVVVDASSTFSNDEDEDDRGTHGSVSLGYDGGGGGGGGEGDESESKRRKLEAFAAEMS 464

Query:   248 GTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHV 307
             G+ +R +REPR+VVQTTSD+DILDDGYRWRKYGQKVVKGNPNPRSYYKCT  GC VRKHV
Sbjct:   465 GS-TRAIREPRVVVQTTSDVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTAPGCTVRKHV 523

Query:   308 ERASHDMRAVITTYEGKHNHDVPAARGSGYTLTRPLPNTNTG 349
             ERASHD+++VITTYEGKHNHDVPAAR S +       N N+G
Sbjct:   524 ERASHDLKSVITTYEGKHNHDVPAARNSSHGGGGDSGNGNSG 565

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS;IMP

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009942 "longitudinal axis specification" evidence=IMP

GO:0030010 "establishment of cell polarity" evidence=IMP

TAIR|locus:2014799 WRKY4 "WRKY DNA-binding protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 689 (247.6 bits), Expect = 7.2e-68, P = 7.2e-68
 Identities = 147/312 (47%), Positives = 191/312 (61%)

Query:    41 TKESDFSTENPGVKSEFAP---MESFSSDMASYQTNVQSNAAPQSGNYGHY-NQSSAYTR 96
             T ++  +  N   ++E+ P   ++SFSS  A   T+    A  ++ +     ++S     
Sbjct:   164 TAQAVQANANMQPQTEYPPPSQVQSFSSGQAQIPTSAPLPAQRETSDVTIIEHRSQQPLN 223

Query:    97 EQKRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHN 156
               K ++DGYNWRKYGQKQVKGSE PRSY+KCT P CP+KKKVERSLDGQ+TEI+YKG HN
Sbjct:   224 VDKPADDGYNWRKYGQKQVKGSEFPRSYYKCTNPGCPVKKKVERSLDGQVTEIIYKGQHN 283

Query:   157 HPKPXXXXXXXXXXXXXXXXCA-NSDLSDQSVGPLG---NTHTDSFSMQNESSTSFGEDD 212
             H  P                 + N++     +G      N+   +   Q+E+ +     +
Sbjct:   284 HEPPQNTKRGNKDNTANINGSSINNNRGSSELGASQFQTNSSNKTKREQHEAVSQATTTE 343

Query:   213 FVEQ---GSPTSN---PIGDDDENEPDAKRWKGENDI-EGVIGTGSRTVREPRIVVQTTS 265
              + +   G    N    + + DENEPD KR   E  I E       RTV EPRI+VQTTS
Sbjct:   344 HLSEASDGEEVGNGETDVREKDENEPDPKRRSTEVRISEPAPAASHRTVTEPRIIVQTTS 403

Query:   266 DIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKH 325
             ++D+LDDGYRWRKYGQKVVKGNP PRSYYKCTT GC VRKHVERA+ D +AV+TTYEGKH
Sbjct:   404 EVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKH 463

Query:   326 NHDVPAARGSGY 337
             NHD+PAA+ S +
Sbjct:   464 NHDLPAAKSSSH 475

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0003677 "DNA binding" evidence=ISS

TAIR|locus:2060805 WRKY25 "WRKY DNA-binding protein 25" [Arabidopsis thaliana (taxid:3702)]

 Score = 655 (235.6 bits), Expect = 8.7e-67, Sum P(2) = 8.7e-67
 Identities = 141/300 (47%), Positives = 176/300 (58%)

Query:    34 PWNF-NKPTKESDFSTENPGVKSEFAPMESFSSDMASYQTNVQSNAAPQSGNYGHYNQSS 92
             PW   ++P+  S    E  GV+      E   +++A+ Q N QS    +      Y  S 
Sbjct:   105 PWQLQSQPSNASSALQETYGVQDHEKKQEMIPNEIAT-QNNNQSFGTERQIKIPAYMVS- 162

Query:    93 AYTREQKRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYK 152
                   + S DGY WRKYGQKQVK SENPRSYFKCT+PDC  KK VE + DGQITEI+YK
Sbjct:   163 ------RNSNDGYGWRKYGQKQVKKSENPRSYFKCTYPDCVSKKIVETASDGQITEIIYK 216

Query:   153 GSHNHPKPXXXXXXXXXXXXXXXXCANSDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDD 212
             G HNHPKP                  N          +   H  S   +N SS SF   D
Sbjct:   217 GGHNHPKPEFTKRPSQSSLPSS---VNGRRLFNPASVVSEPHDQS---EN-SSISFDYSD 269

Query:   213 FVEQGSPTSNPIGDDDENEPDAKRWKGENDIEGVIGTGSRTVREPRIVVQTTSDIDILDD 272
               ++   +     D++E +P+ KR K E + EG+    S+ V+EPR+VVQT SDID+L D
Sbjct:   270 LEQKSFKSEYGEIDEEEEQPEMKRMKREGEDEGMSIEVSKGVKEPRVVVQTISDIDVLID 329

Query:   273 GYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVPAA 332
             G+RWRKYGQKVVKGN NPRSYYKCT  GC V+K VER++ D RAV+TTYEG+HNHD+P A
Sbjct:   330 GFRWRKYGQKVVKGNTNPRSYYKCTFQGCGVKKQVERSAADERAVLTTYEGRHNHDIPTA 389

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0006970 "response to osmotic stress" evidence=IEP

GO:0009409 "response to cold" evidence=IEP

GO:0009651 "response to salt stress" evidence=IMP

GO:0034605 "cellular response to heat" evidence=IMP

GO:0070370 "cellular heat acclimation" evidence=IMP

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009625 "response to insect" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010286 "heat acclimation" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

TAIR|locus:2102147 WRKY58 "WRKY DNA-binding protein 58" [Arabidopsis thaliana (taxid:3702)]

 Score = 408 (148.7 bits), Expect = 5.4e-65, Sum P(2) = 5.4e-65
 Identities = 78/108 (72%), Positives = 88/108 (81%)

Query:   226 DDDENEPDAKRWKGENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVK 285
             DDDE++ D    K    I+GV  T  RTV EP+I+VQT S++D+LDDGYRWRKYGQKVVK
Sbjct:   263 DDDEDDEDLPASKIRR-IDGV-STTHRTVTEPKIIVQTKSEVDLLDDGYRWRKYGQKVVK 320

Query:   286 GNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVPAAR 333
             GNP+PRSYYKCTT  C VRKHVERAS D +AVITTYEGKHNHDVPAAR
Sbjct:   321 GNPHPRSYYKCTTPNCTVRKHVERASTDAKAVITTYEGKHNHDVPAAR 368

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IMP

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0031347 "regulation of defense response" evidence=IMP

TAIR|locus:2133852 WRKY20 [Arabidopsis thaliana (taxid:3702)]

 Score = 636 (228.9 bits), Expect = 3.0e-62, P = 3.0e-62
 Identities = 124/239 (51%), Positives = 160/239 (66%)

Query:   101 SEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKP 160
             ++DGYNWRKYGQK VKGSE PRSY+KCT P+C +KK  ERS DGQIT+I+YKG+H+HPKP
Sbjct:   210 ADDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITDIIYKGTHDHPKP 269

Query:   161 XXXXXXXXXXXXXXXXC----ANSDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQ 216
                                  +++   ++  G    ++ +  +   E       DD  E 
Sbjct:   270 QPGRRNSGGMAAQEERLDKYPSSTGRDEKGSGVYNLSNPNEQTGNPEVPPISASDDGGEA 329

Query:   217 GSPTSNPIGDDDENEPDAKRWKGENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRW 276
              +   N   + D+++P +KR + E  +E  I    + +REPR+VVQT S++DILDDGYRW
Sbjct:   330 AASNRNK-DEPDDDDPFSKRRRMEGAME--ITPLVKPIREPRVVVQTLSEVDILDDGYRW 386

Query:   277 RKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVPAARGS 335
             RKYGQKVV+GNPNPRSYYKCT  GCPVRKHVERASHD +AVITTYEGKH+HDVP ++ S
Sbjct:   387 RKYGQKVVRGNPNPRSYYKCTAHGCPVRKHVERASHDPKAVITTYEGKHDHDVPTSKSS 445

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009611 "response to wounding" evidence=IEP

GO:0009961 "response to 1-aminocyclopropane-1-carboxylic acid" evidence=IEP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

TAIR|locus:2131503 WRKY34 "WRKY DNA-binding protein 34" [Arabidopsis thaliana (taxid:3702)]

 Score = 389 (142.0 bits), Expect = 1.4e-59, Sum P(2) = 1.4e-59
 Identities = 80/128 (62%), Positives = 92/128 (71%)

Query:   210 EDDFVEQGSPTSNPIGDDDENEPDAKRWKGENDIEGVIGTGSRTVREPRIVVQTTSDIDI 269
             EDD     S +    G+ +E+E  +KR K E       G+ +R  REPR+VVQTTSDIDI
Sbjct:   314 EDDRTSHMSVSLTYDGEVEESE--SKRRKLEAYATETSGS-TRASREPRVVVQTTSDIDI 370

Query:   270 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDV 329
             LDDGYRWRKYGQKVVKGNPNPRSYYKCT  GC V KHVERAS D ++V+TTY GKH H V
Sbjct:   371 LDDGYRWRKYGQKVVKGNPNPRSYYKCTANGCTVTKHVERASDDFKSVLTTYIGKHTHVV 430

Query:   330 PAARGSGY 337
             PAAR S +
Sbjct:   431 PAARNSSH 438

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009409 "response to cold" evidence=IEP

GO:0009846 "pollen germination" evidence=IMP

TAIR|locus:2045049 ZAP1 "zinc-dependent activator protein-1" [Arabidopsis thaliana (taxid:3702)]

 Score = 346 (126.9 bits), Expect = 5.4e-55, Sum P(2) = 5.4e-55
 Identities = 68/126 (53%), Positives = 87/126 (69%)

Query:   211 DDFVEQGSPTSNPIGDD---DENEPDAKRWKGENDIEGVIGTGSRTVREPRIVVQTTSDI 267
             DD     S +S   GD+   D N P AKR K   +IE  +    R+  + RIVV T +  
Sbjct:   246 DDVKTDISQSSRITGDNTHKDYNSPTAKRRKKGGNIE--LSPVERSTNDSRIVVHTQTLF 303

Query:   268 DILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNH 327
             DI++DGYRWRKYGQK VKG+P PRSYY+C++ GCPV+KHVER+SHD + +ITTYEGKH+H
Sbjct:   304 DIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDH 363

Query:   328 DVPAAR 333
             D+P  R
Sbjct:   364 DMPPGR 369

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IDA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=IEP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

TAIR|locus:2049852 TTG2 "TRANSPARENT TESTA GLABRA 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
 Identities = 117/268 (43%), Positives = 151/268 (56%)

Query:    88 YNQSSAYTREQKRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQIT 147
             + +S   T ++  S DGYNWRKYGQKQVKGSE PRSY+KCT P CP+KKKVERS++GQ++
Sbjct:   152 FTESETSTGDRS-SVDGYNWRKYGQKQVKGSECPRSYYKCTHPKCPVKKKVERSVEGQVS 210

Query:   148 EIVYKGSHNHPKPX--XXXXXXXXXXXXXXXCANSDLSDQSVG--PLGNTHTDSFSMQNE 203
             EIVY+G HNH KP                     S  S+ S+G  P  N ++  ++ Q+ 
Sbjct:   211 EIVYQGEHNHSKPSCPLPRRASSSISSGFQKPPKSIASEGSMGQDPNNNLYSPLWNNQSN 270

Query:   204 SSTSFGEDDFVEQG---SPTSNPIGDDDENEPDAKR--WKGENDIEGVIGTGSRTVREPR 258
              ST     + + +G   +P    +     + P       K     EG +   SR+ R   
Sbjct:   271 DSTQ-NRTEKMSEGCVITPFEFAVPRSTNSNPGTSDSGCKSSQCDEGELDDPSRSKRRKN 329

Query:   259 I-------VVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERAS 311
                     V Q + + D L+DG+RWRKYGQKVV GN  PRSYY+CT+  C  RKHVERAS
Sbjct:   330 EKQSSEAGVSQGSVESDSLEDGFRWRKYGQKVVGGNAYPRSYYRCTSANCRARKHVERAS 389

Query:   312 HDMRAVITTYEGKHNHDVPAARGSGYTL 339
              D RA ITTYEGKHNH +  +  S  TL
Sbjct:   390 DDPRAFITTYEGKHNHHLLLSPPSSSTL 417

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0010214 "seed coat development" evidence=IMP

GO:0009957 "epidermal cell fate specification" evidence=RCA;IMP

GO:0001708 "cell fate specification" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8S8P5	WRK33_ARATH	No assigned EC number	0.6054	0.7466	0.6416	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00161228	hypothetical protein (534 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_fgenesh4_pg.C_LG_II1481	hypothetical protein (372 aa)						•			0.800

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	446
pfam03106	60	pfam03106, WRKY, WRKY DNA -binding domain	3e-36
pfam03106	60	pfam03106, WRKY, WRKY DNA -binding domain	3e-34
smart00774	59	smart00774, WRKY, DNA binding domain	4e-34
smart00774	59	smart00774, WRKY, DNA binding domain	3e-30

>gnl|CDD|145969 pfam03106, WRKY, WRKY DNA -binding domain

 Score =  127 bits (321), Expect = 3e-36
 Identities = 41/59 (69%), Positives = 48/59 (81%)

Query: 270 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHD 328
           LDDGY WRKYGQK VKG+P PRSYY+CT+ GCPV+K VER+S D + V  TYEG+HNH 
Sbjct: 1   LDDGYNWRKYGQKPVKGSPFPRSYYRCTSPGCPVKKQVERSSDDPQIVEITYEGEHNHP 59

Length = 60

>gnl|CDD|145969 pfam03106, WRKY, WRKY DNA -binding domain

 Score =  121 bits (307), Expect = 3e-34
 Identities = 42/60 (70%), Positives = 48/60 (80%), Gaps = 1/60 (1%)

Query: 101 SEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSL-DGQITEIVYKGSHNHPK 159
            +DGYNWRKYGQK VKGS  PRSY++CT P CP+KK+VERS  D QI EI Y+G HNHPK
Sbjct: 1   LDDGYNWRKYGQKPVKGSPFPRSYYRCTSPGCPVKKQVERSSDDPQIVEITYEGEHNHPK 60

Length = 60

>gnl|CDD|214815 smart00774, WRKY, DNA binding domain

 Score =  121 bits (306), Expect = 4e-34
 Identities = 38/59 (64%), Positives = 46/59 (77%), Gaps = 1/59 (1%)

Query: 270 LDDGYRWRKYGQKVVKGNPNPRSYYKCT-TTGCPVRKHVERASHDMRAVITTYEGKHNH 327
           LDDGY+WRKYGQKV+KG+P PRSYY+CT T GCP +K V+R+  D   V  TYEG+H H
Sbjct: 1   LDDGYQWRKYGQKVIKGSPYPRSYYRCTYTQGCPAKKQVQRSDDDPSVVEVTYEGEHTH 59

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding. Length = 59

>gnl|CDD|214815 smart00774, WRKY, DNA binding domain

 Score =  111 bits (279), Expect = 3e-30
 Identities = 32/58 (55%), Positives = 42/58 (72%), Gaps = 2/58 (3%)

Query: 102 EDGYNWRKYGQKQVKGSENPRSYFKCTF-PDCPMKKKVERSL-DGQITEIVYKGSHNH 157
           +DGY WRKYGQK +KGS  PRSY++CT+   CP KK+V+RS  D  + E+ Y+G H H
Sbjct: 2   DDGYQWRKYGQKVIKGSPYPRSYYRCTYTQGCPAKKQVQRSDDDPSVVEVTYEGEHTH 59

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding. Length = 59

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	446
PF03106	60	WRKY: WRKY DNA -binding domain; InterPro: IPR00365	99.96
smart00774	59	WRKY DNA binding domain. The WRKY domain is a DNA	99.95
PF03106	60	WRKY: WRKY DNA -binding domain; InterPro: IPR00365	99.95
smart00774	59	WRKY DNA binding domain. The WRKY domain is a DNA	99.94
PF04500	62	FLYWCH: FLYWCH zinc finger domain; InterPro: IPR00	88.08
PF04500	62	FLYWCH: FLYWCH zinc finger domain; InterPro: IPR00	86.13
PF03101	91	FAR1: FAR1 DNA-binding domain; InterPro: IPR004330	84.88

>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif

Probab=99.96  E-value=9.6e-31  Score=205.14  Aligned_cols=59  Identities=66%  Similarity=1.301  Sum_probs=52.5

Q ss_pred             CCCCchhhhcCccccCCCCCCCcccccCCCCCCchhhhhhhcCCCCEEEEEEecccCCC
Q 013266          270 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHD  328 (446)
Q Consensus       270 ~dDGY~WRKYGQK~IkGn~~pRsYYrCt~~gC~arK~Vqr~~~D~~~~~ttY~G~HnH~  328 (446)
                      ++|||+|||||||.|+|+++||+||||+..+|+|+|+|||+.+|+.+|+|||+|+|||+
T Consensus         1 ~~Dgy~WRKYGqK~i~g~~~pRsYYrCt~~~C~akK~Vqr~~~d~~~~~vtY~G~H~h~   59 (60)
T PF03106_consen    1 LDDGYRWRKYGQKNIKGSPYPRSYYRCTHPGCPAKKQVQRSADDPNIVIVTYEGEHNHP   59 (60)
T ss_dssp             --SSS-EEEEEEEEETTTTCEEEEEEEECTTEEEEEEEEEETTCCCEEEEEEES--SS-
T ss_pred             CCCCCchhhccCcccCCCceeeEeeeccccChhheeeEEEecCCCCEEEEEEeeeeCCC
Confidence            58999999999999999999999999999999999999999999999999999999997

The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.

>smart00774 WRKY DNA binding domain

Probab=99.95  E-value=1.8e-29  Score=197.87  Aligned_cols=58  Identities=64%  Similarity=1.263  Sum_probs=56.5

Q ss_pred             CCCCchhhhcCccccCCCCCCCcccccCC-CCCCchhhhhhhcCCCCEEEEEEecccCC
Q 013266          270 LDDGYRWRKYGQKVVKGNPNPRSYYKCTT-TGCPVRKHVERASHDMRAVITTYEGKHNH  327 (446)
Q Consensus       270 ~dDGY~WRKYGQK~IkGn~~pRsYYrCt~-~gC~arK~Vqr~~~D~~~~~ttY~G~HnH  327 (446)
                      ++|||.|||||||.|+|+++||+||||+. +||+|+|+|||+++|+.+++|||+|+|||
T Consensus         1 ~~DGy~WRKYGQK~ikgs~~pRsYYrCt~~~~C~a~K~Vq~~~~d~~~~~vtY~g~H~h   59 (59)
T smart00774        1 LDDGYQWRKYGQKVIKGSPFPRSYYRCTYSQGCPAKKQVQRSDDDPSVVEVTYEGEHTH   59 (59)
T ss_pred             CCCcccccccCcEecCCCcCcceEEeccccCCCCCcccEEEECCCCCEEEEEEeeEeCC
Confidence            47999999999999999999999999998 99999999999999999999999999998

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.

>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif

Probab=99.95  E-value=2.7e-29  Score=196.98  Aligned_cols=59  Identities=61%  Similarity=1.217  Sum_probs=50.6

Q ss_pred             CCCCccccccCcccCCCCCCCCCcccCCCCCCccccchhccc-CCceeEeeecCCCCCCC
Q 013266          101 SEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSL-DGQITEIVYKGSHNHPK  159 (446)
Q Consensus       101 ~dDGy~WRKYGQK~Ikgs~~pRsYYrCt~~~C~akK~Vqr~~-dg~~~~i~Y~G~HnH~~  159 (446)
                      ++|||+|||||||.|+|+++||+||||++.+|+|+|+|||+. |+.+++|+|+|+|||++
T Consensus         1 ~~Dgy~WRKYGqK~i~g~~~pRsYYrCt~~~C~akK~Vqr~~~d~~~~~vtY~G~H~h~k   60 (60)
T PF03106_consen    1 LDDGYRWRKYGQKNIKGSPYPRSYYRCTHPGCPAKKQVQRSADDPNIVIVTYEGEHNHPK   60 (60)
T ss_dssp             --SSS-EEEEEEEEETTTTCEEEEEEEECTTEEEEEEEEEETTCCCEEEEEEES--SS--
T ss_pred             CCCCCchhhccCcccCCCceeeEeeeccccChhheeeEEEecCCCCEEEEEEeeeeCCCC
Confidence            489999999999999999999999999999999999999986 78889999999999985

The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.

>smart00774 WRKY DNA binding domain

Probab=99.94  E-value=4.1e-28  Score=190.20  Aligned_cols=57  Identities=56%  Similarity=1.154  Sum_probs=54.8

Q ss_pred             CCCCccccccCcccCCCCCCCCCcccCCC-CCCccccchhccc-CCceeEeeecCCCCC
Q 013266          101 SEDGYNWRKYGQKQVKGSENPRSYFKCTF-PDCPMKKKVERSL-DGQITEIVYKGSHNH  157 (446)
Q Consensus       101 ~dDGy~WRKYGQK~Ikgs~~pRsYYrCt~-~~C~akK~Vqr~~-dg~~~~i~Y~G~HnH  157 (446)
                      .+|||.|||||||.|+|+++||+||||++ ++|+|+|+||++. |+.+++|+|+|+|||
T Consensus         1 ~~DGy~WRKYGQK~ikgs~~pRsYYrCt~~~~C~a~K~Vq~~~~d~~~~~vtY~g~H~h   59 (59)
T smart00774        1 LDDGYQWRKYGQKVIKGSPFPRSYYRCTYSQGCPAKKQVQRSDDDPSVVEVTYEGEHTH   59 (59)
T ss_pred             CCCcccccccCcEecCCCcCcceEEeccccCCCCCcccEEEECCCCCEEEEEEeeEeCC
Confidence            48999999999999999999999999999 9999999999996 789999999999998

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.

>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=88.08  E-value=0.13  Score=38.42  Aligned_cols=49  Identities=20%  Similarity=0.476  Sum_probs=24.2

Q ss_pred             cCCCCccccccCcccCCCCCCCCCcccCCCC---CCccccchhcccCCceeEeeecCCCCC
Q 013266          100 RSEDGYNWRKYGQKQVKGSENPRSYFKCTFP---DCPMKKKVERSLDGQITEIVYKGSHNH  157 (446)
Q Consensus       100 ~~dDGy~WRKYGQK~Ikgs~~pRsYYrCt~~---~C~akK~Vqr~~dg~~~~i~Y~G~HnH  157 (446)
                      ..-|||.-++....      ..+.|++|+..   +|+|+-.+.  .++. ..+...++|||
T Consensus        11 L~~~Gy~y~~~~~~------~~~~~WrC~~~~~~~C~a~~~~~--~~~~-~~~~~~~~HnH   62 (62)
T PF04500_consen   11 LVYDGYRYYFNKRN------DGKTYWRCSRRRSHGCRARLITD--AGDG-RVVRTNGEHNH   62 (62)
T ss_dssp             EEETTEEEEEEEE-------SS-EEEEEGGGTTS----EEEEE----TT-EEEE-S---SS
T ss_pred             EEECCeEEECcCCC------CCcEEEEeCCCCCCCCeEEEEEE--CCCC-EEEECCCccCC
Confidence            45788887665544      34579999874   799976666  2222 23445599999

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a potential FLYWCH Zn-finger domain found in a number of eukaryotic proteins. FLYWCH is a C2H2-type zinc finger characterised by five conserved hydrophobic residues, containing the conserved sequence motif: F/Y-X(n)-L-X(n)-F/Y-X(n)-WXCX(6-12)CX(17-22)HXH where X indicates any amino acid. This domain was first characterised in Drosophila Modifier of mdg4 proteins, Mod(mgd4), putative chromatin modulators involved in higher order chromatin domains. Mod(mdg4) proteins share a common N-terminal BTB/POZ domain, but differ in their C-terminal region, most containing C-terminal FLYWCH zinc finger motifs []. The FLYWCH domain in Mod(mdg4) proteins has a putative role in protein-protein interactions; for example, Mod(mdg4)-67.2 interacts with DNA-binding protein Su(Hw) via its FLYWCH domain. FLYWCH domains have been described in other proteins as well, including suppressor of killer of prune, Su(Kpn), which contains 4 terminal FLYWCH zinc finger motifs in a tandem array and a C-terminal glutathione SH-transferase (GST) domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2RPR_A.

>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=86.13  E-value=0.16  Score=37.96  Aligned_cols=47  Identities=32%  Similarity=0.714  Sum_probs=24.1

Q ss_pred             CCCchhhhcCccccCCCCCCCcccccCC---CCCCchhhhhhhcCCCCEEEEEEecccCC
Q 013266          271 DDGYRWRKYGQKVVKGNPNPRSYYKCTT---TGCPVRKHVERASHDMRAVITTYEGKHNH  327 (446)
Q Consensus       271 dDGY~WRKYGQK~IkGn~~pRsYYrCt~---~gC~arK~Vqr~~~D~~~~~ttY~G~HnH  327 (446)
                      -|||+-++....      ....|++|+.   .+|+|+-.+.  .++ ..+ +...++|||
T Consensus        13 ~~Gy~y~~~~~~------~~~~~WrC~~~~~~~C~a~~~~~--~~~-~~~-~~~~~~HnH   62 (62)
T PF04500_consen   13 YDGYRYYFNKRN------DGKTYWRCSRRRSHGCRARLITD--AGD-GRV-VRTNGEHNH   62 (62)
T ss_dssp             ETTEEEEEEEE-------SS-EEEEEGGGTTS----EEEEE----T-TEE-EE-S---SS
T ss_pred             ECCeEEECcCCC------CCcEEEEeCCCCCCCCeEEEEEE--CCC-CEE-EECCCccCC
Confidence            489987775554      4468999994   3899988876  223 333 455599998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a potential FLYWCH Zn-finger domain found in a number of eukaryotic proteins. FLYWCH is a C2H2-type zinc finger characterised by five conserved hydrophobic residues, containing the conserved sequence motif: F/Y-X(n)-L-X(n)-F/Y-X(n)-WXCX(6-12)CX(17-22)HXH where X indicates any amino acid. This domain was first characterised in Drosophila Modifier of mdg4 proteins, Mod(mgd4), putative chromatin modulators involved in higher order chromatin domains. Mod(mdg4) proteins share a common N-terminal BTB/POZ domain, but differ in their C-terminal region, most containing C-terminal FLYWCH zinc finger motifs []. The FLYWCH domain in Mod(mdg4) proteins has a putative role in protein-protein interactions; for example, Mod(mdg4)-67.2 interacts with DNA-binding protein Su(Hw) via its FLYWCH domain. FLYWCH domains have been described in other proteins as well, including suppressor of killer of prune, Su(Kpn), which contains 4 terminal FLYWCH zinc finger motifs in a tandem array and a C-terminal glutathione SH-transferase (GST) domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2RPR_A.

>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants

Probab=84.88  E-value=0.43  Score=38.78  Aligned_cols=30  Identities=30%  Similarity=0.519  Sum_probs=24.8

Q ss_pred             CCCccccchhcccCCceeEeeecCCCCCCC
Q 013266          130 PDCPMKKKVERSLDGQITEIVYKGSHNHPK  159 (446)
Q Consensus       130 ~~C~akK~Vqr~~dg~~~~i~Y~G~HnH~~  159 (446)
                      -+|+|+-.|-+..+|....+.+..+|||+.
T Consensus        60 tgC~a~i~v~~~~~~~w~v~~~~~~HNH~L   89 (91)
T PF03101_consen   60 TGCKARINVKRRKDGKWRVTSFVLEHNHPL   89 (91)
T ss_pred             cCCCEEEEEEEccCCEEEEEECcCCcCCCC
Confidence            489999888877777776777999999975

It has been found that the proteins governing this response, which include FAR-RED ELONGATED HYPOCOTYL3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1), are a pair of homologous proteins sharing significant sequence homology to mutator-like transposases. These proteins appear to be novel transcription factors, which are essential for activating the expression of FHY1 and FHL (for FHY1-like) and related genes, whose products are required for light-induced phytochrome A nuclear accumulation and subsequent light responses in plants. The FRS (FAR1 Related Sequences) family of proteins share a similar domain structure to mutator-like transposases, including an N-terminal C2H2 zinc finger domain, a central putative core transposase domain, and a C-terminal SWIM motif (named after SWI2/SNF and MuDR transposases). It seems plausible that the FRS family represent transcription factors derived from mutator-like transposases [, ]. This entry represents a domain found in FAR1 and FRS proteins. It contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	446
1wj2_A	78	Solution Structure Of The C-Terminal Wrky Domain Of		2e-31
2ayd_A	76	Crystal Structure Of The C-Terminal Wrky Domainof A		2e-27

>pdb|1WJ2|A Chain A, Solution Structure Of The C-Terminal Wrky Domain Of Atwrky4 Length = 78

Iteration: 1
 Score =  133 bits (334), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 59/71 (83%), Positives = 66/71 (92%)
Query: 261 VQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITT 320
           VQTTS++D+LDDGYRWRKYGQKVVKGNP PRSYYKCTT GC VRKHVERA+ D +AV+TT
Sbjct: 8   VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTT 67
Query: 321 YEGKHNHDVPA 331
           YEGKHNHD+PA
Sbjct: 68  YEGKHNHDLPA 78

>pdb|2AYD|A Chain A, Crystal Structure Of The C-Terminal Wrky Domainof Atwrky1, An Sa-Induced And Partially Npr1-Dependent Transcription Factor Length = 76

Iteration: 1
 Score =  120 bits (300), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 51/73 (69%), Positives = 64/73 (87%)
Query: 258 RIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAV 317
           RIVV T +  DI++DGYRWRKYGQK VKG+P PRSYY+C++ GCPV+KHVER+SHD + +
Sbjct: 2   RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLL 61
Query: 318 ITTYEGKHNHDVP 330
           ITTYEGKH+HD+P
Sbjct: 62  ITTYEGKHDHDMP 74

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	446
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	6e-49
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	1e-26
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	4e-46
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	3e-27
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A* Length = 78

 Score =  160 bits (407), Expect = 6e-49
 Identities = 59/77 (76%), Positives = 66/77 (85%)

Query: 255 REPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDM 314
                 VQTTS++D+LDDGYRWRKYGQKVVKGNP PRSYYKCTT GC VRKHVERA+ D 
Sbjct: 2   SSGSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDP 61

Query: 315 RAVITTYEGKHNHDVPA 331
           +AV+TTYEGKHNHD+PA
Sbjct: 62  KAVVTTYEGKHNHDLPA 78

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A* Length = 78

 Score =  101 bits (253), Expect = 1e-26
 Identities = 33/60 (55%), Positives = 41/60 (68%), Gaps = 1/60 (1%)

Query: 102 EDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSL-DGQITEIVYKGSHNHPKP 160
           +DGY WRKYGQK VKG+  PRSY+KCT P C ++K VER+  D +     Y+G HNH  P
Sbjct: 18  DDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLP 77

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana} Length = 76

 Score =  153 bits (388), Expect = 4e-46
 Identities = 51/75 (68%), Positives = 64/75 (85%)

Query: 258 RIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAV 317
           RIVV T +  DI++DGYRWRKYGQK VKG+P PRSYY+C++ GCPV+KHVER+SHD + +
Sbjct: 2   RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLL 61

Query: 318 ITTYEGKHNHDVPAA 332
           ITTYEGKH+HD+P  
Sbjct: 62  ITTYEGKHDHDMPPG 76

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana} Length = 76

 Score =  102 bits (257), Expect = 3e-27
 Identities = 34/61 (55%), Positives = 42/61 (68%), Gaps = 1/61 (1%)

Query: 102 EDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSL-DGQITEIVYKGSHNHPKP 160
            DGY WRKYGQK VKGS  PRSY++C+ P CP+KK VERS  D ++    Y+G H+H  P
Sbjct: 15  NDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMP 74

Query: 161 T 161
            
Sbjct: 75  P 75

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 5e-04
 Identities = 42/353 (11%), Positives = 90/353 (25%), Gaps = 109/353 (30%)

Query: 5   NYFDFSFQT--QTRPSSNSVSVEESVKRQQEPWNFNKPTKESDFSTENPGVKSEFAPMES 62
           N F+ S +    TR    +              +F      +  S ++        P E 
Sbjct: 260 NAFNLSCKILLTTRFKQVT--------------DFLSAATTTHISLDH--HSMTLTPDEV 303

Query: 63  FSSDMASYQTNVQSNAAP---QSGNYGHYNQSSAYTREQK-RSEDGYNWRKYGQKQVK-- 116
            S  +  Y  + +    P    + N    +  +   R+     +   NW+     ++   
Sbjct: 304 KSL-LLKY-LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD---NWKHVNCDKLTTI 358

Query: 117 -----GSENP---RSYFK-CT-FP-DCPMKKKVERSL----DGQITEIVYKGSHN----- 156
                    P   R  F   + FP    +   +   +          +V    H      
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418

Query: 157 -HPKPTS---------TRRSSSSQSMQHSTCANS-------DLSDQSVGPLGN------- 192
             PK ++          +    ++   H +  +        D  D     L         
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG 478

Query: 193 ------THTDSFSMQNESSTSFGEDDFVEQ-----GSPTSNPIGDDD------------- 228
                  H +  ++       F    F+EQ      +  +      +             
Sbjct: 479 HHLKNIEHPERMTLFRMVFLDF---RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYIC 535

Query: 229 ENEPDAKRWKGENDIEG-VIGTGSRTVREP-----RIVVQTTSDIDILDDGYR 275
           +N+P  +R    N I   +       +        RI +    +  I ++ ++
Sbjct: 536 DNDPKYERL--VNAILDFLPKIEENLICSKYTDLLRIALMAEDE-AIFEEAHK 585

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	446
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	100.0
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	100.0
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	99.95
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	99.95

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}

Probab=100.00  E-value=1.3e-35  Score=241.45  Aligned_cols=76  Identities=67%  Similarity=1.280  Sum_probs=73.3

Q ss_pred             ceeEeeccCCcccCCCCchhhhcCccccCCCCCCCcccccCCCCCCchhhhhhhcCCCCEEEEEEecccCCCCCCC
Q 013266          257 PRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVPAA  332 (446)
Q Consensus       257 ~rvvv~t~se~d~~dDGY~WRKYGQK~IkGn~~pRsYYrCt~~gC~arK~Vqr~~~D~~~~~ttY~G~HnH~~P~~  332 (446)
                      .||+|+|.+++++++|||+|||||||.|||+++||+|||||.+||+|+|+|||+.+|+.+++|||+|+|||+.|.+
T Consensus         1 ~r~~v~t~~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~~   76 (76)
T 2ayd_A            1 SRIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPPG   76 (76)
T ss_dssp             CEEEEEEECSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCCCC
T ss_pred             CeEEEEecCCCCcCCCCchhhhCcccccCCCCCceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCCCC
Confidence            3799999999999999999999999999999999999999999999999999999999999999999999999863

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*

Probab=100.00  E-value=2.4e-35  Score=240.98  Aligned_cols=75  Identities=79%  Similarity=1.297  Sum_probs=69.8

Q ss_pred             ceeEeeccCCcccCCCCchhhhcCccccCCCCCCCcccccCCCCCCchhhhhhhcCCCCEEEEEEecccCCCCCC
Q 013266          257 PRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVPA  331 (446)
Q Consensus       257 ~rvvv~t~se~d~~dDGY~WRKYGQK~IkGn~~pRsYYrCt~~gC~arK~Vqr~~~D~~~~~ttY~G~HnH~~P~  331 (446)
                      .+|+|+|.+++++++|||+|||||||.|||+++||+|||||.+||+|+|+|||+.+|+.+++|||+|+|||+.|+
T Consensus         4 ~~~~~~t~s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   78 (78)
T 1wj2_A            4 GSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA   78 (78)
T ss_dssp             ----CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred             ceEEEeccCCCCcCCCCchhhhCcccccCCCcCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence            478999999999999999999999999999999999999999999999999999999999999999999999984

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}

Probab=99.95  E-value=1e-29  Score=206.91  Aligned_cols=65  Identities=52%  Similarity=0.996  Sum_probs=60.8

Q ss_pred             ccccCCCCccccccCcccCCCCCCCCCcccCCCCCCccccchhccc-CCceeEeeecCCCCCCCCC
Q 013266           97 EQKRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSL-DGQITEIVYKGSHNHPKPT  161 (446)
Q Consensus        97 ~~~~~dDGy~WRKYGQK~Ikgs~~pRsYYrCt~~~C~akK~Vqr~~-dg~~~~i~Y~G~HnH~~p~  161 (446)
                      +....+|||+|||||||.|||+++||+|||||+++|+|+|+|||+. |+.+++|+|+|+|||+.|.
T Consensus        10 ~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   75 (76)
T 2ayd_A           10 LFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP   75 (76)
T ss_dssp             SSSCCCCSSCEEEEEEECCTTCSSCEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred             CCCcCCCCchhhhCcccccCCCCCceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence            4567899999999999999999999999999999999999999985 6789999999999999885

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*

Probab=99.95  E-value=1.1e-29  Score=207.55  Aligned_cols=64  Identities=52%  Similarity=0.977  Sum_probs=59.9

Q ss_pred             cccCCCCccccccCcccCCCCCCCCCcccCCCCCCccccchhccc-CCceeEeeecCCCCCCCCC
Q 013266           98 QKRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSL-DGQITEIVYKGSHNHPKPT  161 (446)
Q Consensus        98 ~~~~dDGy~WRKYGQK~Ikgs~~pRsYYrCt~~~C~akK~Vqr~~-dg~~~~i~Y~G~HnH~~p~  161 (446)
                      ..+++|||+|||||||.|||+++||+|||||+++|+|+|+|||+. |+.+++|+|+|+|||+.|.
T Consensus        14 ~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   78 (78)
T 1wj2_A           14 VDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA   78 (78)
T ss_dssp             CCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred             CCcCCCCchhhhCcccccCCCcCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence            567899999999999999999999999999999999999999975 7789999999999999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	446
d1wj2a_	71	g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cr	5e-37
d1wj2a_	71	g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cr	2e-26

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 71

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  127 bits (321), Expect = 5e-37
 Identities = 59/71 (83%), Positives = 66/71 (92%)

Query: 261 VQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITT 320
           VQTTS++D+LDDGYRWRKYGQKVVKGNP PRSYYKCTT GC VRKHVERA+ D +AV+TT
Sbjct: 1   VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTT 60

Query: 321 YEGKHNHDVPA 331
           YEGKHNHD+PA
Sbjct: 61  YEGKHNHDLPA 71

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 71

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 99.5 bits (248), Expect = 2e-26
 Identities = 35/67 (52%), Positives = 43/67 (64%), Gaps = 1/67 (1%)

Query: 95  TREQKRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSL-DGQITEIVYKG 153
           T E    +DGY WRKYGQK VKG+  PRSY+KCT P C ++K VER+  D +     Y+G
Sbjct: 4   TSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEG 63

Query: 154 SHNHPKP 160
            HNH  P
Sbjct: 64  KHNHDLP 70

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	446
d1wj2a_	71	WRKY DNA-binding protein 4 {Thale cress (Arabidops	100.0
d1wj2a_	71	WRKY DNA-binding protein 4 {Thale cress (Arabidops	99.95

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=6.6e-35  Score=232.63  Aligned_cols=71  Identities=83%  Similarity=1.402  Sum_probs=68.6

Q ss_pred             eeccCCcccCCCCchhhhcCccccCCCCCCCcccccCCCCCCchhhhhhhcCCCCEEEEEEecccCCCCCC
Q 013266          261 VQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVPA  331 (446)
Q Consensus       261 v~t~se~d~~dDGY~WRKYGQK~IkGn~~pRsYYrCt~~gC~arK~Vqr~~~D~~~~~ttY~G~HnH~~P~  331 (446)
                      |+|.++++++||||+|||||||.|||+++||+||||+.+||+|+|+|||+++|+.+++|||+|+|||+.|+
T Consensus         1 v~t~~~~~~~dDGy~WRKYGQK~ikgs~~pRsYYrCt~~~C~a~K~Vqr~~~d~~~~~vtY~G~H~h~~Ps   71 (71)
T d1wj2a_           1 VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA   71 (71)
T ss_dssp             CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred             CccccccccCCCCcEecccCceeccCCCCceEEEEccccCCCCcceEEEEcCCCCEEEEEEeeEeCCCCCC
Confidence            57889999999999999999999999999999999999999999999999999999999999999999884

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.95  E-value=2.7e-30  Score=205.85  Aligned_cols=65  Identities=52%  Similarity=0.981  Sum_probs=60.6

Q ss_pred             ccccCCCCccccccCcccCCCCCCCCCcccCCCCCCccccchhccc-CCceeEeeecCCCCCCCCC
Q 013266           97 EQKRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSL-DGQITEIVYKGSHNHPKPT  161 (446)
Q Consensus        97 ~~~~~dDGy~WRKYGQK~Ikgs~~pRsYYrCt~~~C~akK~Vqr~~-dg~~~~i~Y~G~HnH~~p~  161 (446)
                      +...+||||.|||||||.|+|+++||+||||++++|+|+|+|||+. |+.+++|+|+|+|||+.|.
T Consensus         6 ~~~~~dDGy~WRKYGQK~ikgs~~pRsYYrCt~~~C~a~K~Vqr~~~d~~~~~vtY~G~H~h~~Ps   71 (71)
T d1wj2a_           6 EVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA   71 (71)
T ss_dssp             CCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred             ccccCCCCcEecccCceeccCCCCceEEEEccccCCCCcceEEEEcCCCCEEEEEEeeEeCCCCCC
Confidence            3566899999999999999999999999999999999999999986 7889999999999999874