Citrus Sinensis ID: 013277

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440------
Protein Sequence
MVSTATTLTLLPHPSLSFSHSSSSSFLAGGTHLRSHKNFAALTLSADSCPFGGSKLNSSNARSSTYRFGRSVVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRIRYVYSPSLTIIQLNSVIILLFLVSYMI
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccEEEccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccHHHHHHccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccEEEEEEEEHHHHccccEEEEEEccccccccccccccccccccccccccccccEEEEEEEcccEEEEEEEEccccccccEEEccccccccccEEEEEEEEEEEEcccccccccEEEEcccccccccccccccEEEEEEEEcccccEEEcccEEEEEEccHHHHccccEEEEcccccEEEEEcccccccccEEEEccccccccccccccccEEEEEEEEccccccHHHHHHHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEcccccccccccccccccccccccccccEcccccccccccccccccccccccccccccccccccccEEEEccccHHHHHcccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccHHHHHHHHHccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccEEEEEEEHHHHHcccEEEEEEccEcEccccccccccccccccccccccccEEEEEEEcccccEEEEEEEccccccccEEEcccccccccccEEEEEEEEEEEEccccccccEEEEEccccccccccccccEEEEEEEEccccEEEccccEEEEEEEEHHHHHcccEEEEEccccEEEEEcccccccccEEEEccccccccccccccccEEEEEEEEccccccHHHHHHHHHHHHHccccHHHcEEEcc
Coil and Loop (DISEMBL)
mvstattltllphpslsfshsssssflaggthlrshKNFAALtlsadscpfggsklnssnarsstyrfgrsvvcasgdyyatlgvpksasgKEIKAAYRKLARqyhpdvnkepgateKFKEISAAYEVLSDDKKRAMYDqygeagvkstvgggssayttnpfdlfetffgpsmggfpgmnqtgfrtrrrstvtkgedLRYDIVLEFSESIFGAekefelshletcevctgtgakmgskmricstcggrgqvmrtdqtpfglfsqvsvcpscggegevISEYCRKCsgegrirlkknikvkvppgvstgSILRVvgegdagprggppgdlyvyldveeipgiqrdgidLFSTISISYLDAIMGTVVKVKTVEgiselqvppgtqpgdVLVLakkgapklnkpsirgdhlFTVKVtipnriryvyspsltiIQLNSVIILLFLVSYMI
Flexible Loop (DISEMBL)
mvstattltllphpslsfsHSSSSSFLAGGTHLRSHKNFAALTLSADSCPFGGSKlnssnarsstyrFGRSVVCASGDYYAtlgvpksasgkEIKAAYRKLArqyhpdvnkepgatekfkEISAAYEVLSDDKKRAMYDQYGEagvkstvgggsSAYTTNPFDLFETFFGPSMGGfpgmnqtgfrtrrrstvtkgedlryDIVLEFSESIFGAEKEFELSHLETCEVCTgtgakmgskMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSgegrirlkknikvkvppgvstGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGIselqvppgtqpgDVLVLAKKGApklnkpsirgdhlftVKVTIPNRIRYVyspsltiiqlnSVIILLFLVSYMI
Low Complexity Region (SEG)
MVstattltllphpslsfshsssssflaggtHLRSHKNFAALTLSADSCPFGGSKLNSSNARSSTYRFGRSVVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGSSAYTTNPFDLFETffgpsmggfpgmNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVgegdagprggppgDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRIRYVYSPSLTIIQLNSVIILLFLVSYMI
Disordered region (IsUnstruct)
*************************************NFAALTL********************TYRFGRSVVCASGDYYATLGVPK******IKAAYRKL***********************AYEVL*******MYDQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRT***STVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEG********PGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLAKKGA*KLNKPSIRGDHLFTVKVTIPNRIRYVYSPSLTIIQLNSVIILLFLVSY**
Disordered Region (DISOPRED)
****************************************************************************GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVK*********YTTNPFDLFETFFGPSMG************************RYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILR***********GPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRIRYVYSPSL***************SYMI
Disordered Region (DISEMBL)
MVSTATTLTLLPHPSL**********LAGGTHLRSHKNFAALTLSADSCPFGGSKLNSSNARSSTYRFGRSVVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRIRYVYSPSLTIIQLNSVIILLFLVSYMI
Disordered Region (DISPRO)
****ATTLTLLPHP**********************************CP****************RFGRSVVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTG**M*SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRIRYVYSPSLTIIQLNSVIILLFLVSYMI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVSTATTLTLLPHPSLSFSHSSSSSFLAGGTHLRSHKNFAALTLSADSCPFGGSKLNSSNARSSTYRFGRSVVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRIRYVYSPSLTIIQLNSVIILLFLVSYMI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	446	2.2.26 [Sep-21-2011]
Q8DKR7	373	Chaperone protein DnaJ OS	yes	no	0.744	0.890	0.545	1e-105
B7KEJ8	375	Chaperone protein DnaJ OS	yes	no	0.757	0.901	0.558	1e-104
B0CAZ0	374	Chaperone protein DnaJ OS	yes	no	0.751	0.895	0.537	1e-103
B8HLD2	374	Chaperone protein DnaJ OS	yes	no	0.753	0.898	0.530	1e-101
Q114R3	374	Chaperone protein DnaJ OS	yes	no	0.753	0.898	0.523	1e-100
B0JW23	374	Chaperone protein DnaJ OS	yes	no	0.755	0.901	0.532	1e-100
Q7VEJ6	378	Chaperone protein DnaJ OS	yes	no	0.755	0.891	0.511	4e-98
Q2JW78	394	Chaperone protein DnaJ OS	yes	no	0.739	0.837	0.525	6e-97
Q55505	377	Chaperone protein DnaJ 1	N/A	no	0.755	0.893	0.538	4e-96
Q2JH49	394	Chaperone protein DnaJ OS	yes	no	0.739	0.837	0.511	3e-94

>sp|Q8DKR7|DNAJ_THEEB Chaperone protein DnaJ OS=Thermosynechococcus elongatus (strain BP-1) GN=dnaJ PE=3 SV=2

 Score =  382 bits (980), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 191/350 (54%), Positives = 241/350 (68%), Gaps = 18/350 (5%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
           D+Y  LGV +SA  +E+K AYR+LAR+YHPDVNKEPGA EKFKEI+ AYEVLSD + RA 
Sbjct: 4   DFYEILGVSRSADAEELKRAYRRLARKYHPDVNKEPGAEEKFKEINRAYEVLSDPQARAN 63

Query: 138 YDQYGEAGVKSTVGGGSSAYTTNPF----DLFETFFGPSMGGFPGMNQTGFRT--RRRST 191
           YD++GEAGV      G S +         D+FETFFG            GF T  RR+  
Sbjct: 64  YDRFGEAGVSGVGAAGFSDFGIGDMGGFADIFETFFG------------GFTTSSRRQQG 111

Query: 192 VTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQV 251
            T+GEDLRYD+ LEF E++FG EKE  ++HLETC+ C GTGAK G++   CSTCGG GQV
Sbjct: 112 PTRGEDLRYDLKLEFREAVFGGEKEIRINHLETCKTCQGTGAKPGTRPVTCSTCGGVGQV 171

Query: 252 MRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSIL 311
            R+ +TPFG F+Q++ CP+CGG G VI + C  C G+G I++ K +K+ +P GV  G+ L
Sbjct: 172 RRSARTPFGSFTQLTTCPTCGGSGVVIEDRCESCGGQGHIQVSKKLKITIPAGVDNGTRL 231

Query: 312 RVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVE 371
           RV GEGDAG RGGPPGDLYVYL V+  P  QR+G ++ S I ISYL AI+G  + V TV+
Sbjct: 232 RVSGEGDAGLRGGPPGDLYVYLFVQPDPEFQREGNNILSRIKISYLQAILGCRISVSTVD 291

Query: 372 GISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRIRY 421
           G +EL++P GTQPG VLVL  +G P++  P  RGDHL TV V IP  I +
Sbjct: 292 GEAELKIPAGTQPGTVLVLEGRGVPRVGNPVARGDHLITVDVEIPTHITH 341

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.
Thermosynechococcus elongatus (strain BP-1) (taxid: 197221)

>sp|B7KEJ8|DNAJ_CYAP7 Chaperone protein DnaJ OS=Cyanothece sp. (strain PCC 7424) GN=dnaJ PE=3 SV=1

 Score =  379 bits (972), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 192/344 (55%), Positives = 233/344 (67%), Gaps = 6/344 (1%)

Query: 77  GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRA 136
           GDYY  LGV + A+  EIK AYR+LAR+YHPDVNKE GA E+FKEI+ AYE+LS+ + RA
Sbjct: 3   GDYYEILGVSRDANKDEIKRAYRRLARKYHPDVNKEIGAEERFKEINRAYEILSEPETRA 62

Query: 137 MYDQYGEAGVKSTVGGGSSAYTTNPF-DLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKG 195
            YD++GEAGV S  G G          D+FET F     GF GM  TG  +RRR+   +G
Sbjct: 63  RYDRFGEAGVSSGAGSGFEYGDMGGIADIFETIFS----GFGGMG-TGTSSRRRTGPVRG 117

Query: 196 EDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTD 255
           +DLR D  L F E++FG EKE  + HLETC+VC G+GAK G+  R CSTC G GQV R  
Sbjct: 118 DDLRLDFKLNFREAVFGGEKEIRIRHLETCQVCEGSGAKPGTGSRTCSTCSGSGQVRRAT 177

Query: 256 QTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVG 315
           +TPFG F+QVSVCP+C G GEVI E C  C G GR +  K +K+ +P GV  G+ LRV  
Sbjct: 178 RTPFGTFAQVSVCPTCNGSGEVIEEKCEACGGSGRKQETKKLKITIPAGVDNGTRLRVSR 237

Query: 316 EGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISE 375
           EGDAG RGGPPGDLYVYL VE     QR+GID+ S ISISYL AI+G  + V TV+G  E
Sbjct: 238 EGDAGQRGGPPGDLYVYLSVETDEEFQREGIDIKSEISISYLQAILGCRLSVNTVDGPEE 297

Query: 376 LQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRI 419
           + + PGTQP  VL L  +G PKL  P  RGDHL T+ V+IP R+
Sbjct: 298 ITIEPGTQPNTVLTLPNRGVPKLGNPVARGDHLITINVSIPTRV 341

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Cyanothece sp. (strain PCC 7424) (taxid: 65393)

>sp|B0CAZ0|DNAJ_ACAM1 Chaperone protein DnaJ OS=Acaryochloris marina (strain MBIC 11017) GN=dnaJ PE=3 SV=1

 Score =  375 bits (964), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 185/344 (53%), Positives = 238/344 (69%), Gaps = 9/344 (2%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
           DYY  LGV +SA   E+K +YR+LAR+YHPDVNKEPGA +KFKEI+ AYE LSD + R  
Sbjct: 4   DYYDILGVSRSADPDELKRSYRRLARKYHPDVNKEPGAEDKFKEINKAYETLSDPQMRGR 63

Query: 138 YDQYGEAGVKSTVGGGSSAYTT--NPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKG 195
           YDQ+GEAGV S  G G   +       D+FETFF     GF G  Q+G   RRRS   +G
Sbjct: 64  YDQFGEAGVSSAAGAGYQDFGDFGGFADIFETFFS----GFGGSPQSG---RRRSGPARG 116

Query: 196 EDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTD 255
           EDLR+D+ L+F E++FG E++  +SHLE+C+ C GTGAK G++ + CSTC G GQV R  
Sbjct: 117 EDLRFDLKLKFREAVFGGEQQIRISHLESCKTCEGTGAKPGTRPQTCSTCQGSGQVRRMT 176

Query: 256 QTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVG 315
           +TP G F+QVSVCP+C G+G+V++E C  C G G+ ++ K +++K+P GV TG+ LRV  
Sbjct: 177 RTPLGNFTQVSVCPTCNGQGQVVTEKCDSCGGRGQNQVSKKLQIKIPAGVDTGTRLRVSN 236

Query: 316 EGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISE 375
           EGDAG +GGPPGDLYVYL V+E    +RDG ++ S   ISYL AI+G  + VKTV+G   
Sbjct: 237 EGDAGQKGGPPGDLYVYLFVQEDSEFRRDGTNVLSEFKISYLQAILGAQLPVKTVDGEET 296

Query: 376 LQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRI 419
           + +P GTQPG VL L   G P+L  P  RGDHL TV + IPNRI
Sbjct: 297 ITIPAGTQPGTVLTLENHGVPRLGNPVSRGDHLITVIIDIPNRI 340

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Acaryochloris marina (strain MBIC 11017) (taxid: 329726)

>sp|B8HLD2|DNAJ_CYAP4 Chaperone protein DnaJ OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=dnaJ PE=3 SV=1

 Score =  368 bits (945), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 182/343 (53%), Positives = 236/343 (68%), Gaps = 7/343 (2%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
           DYY  LGV + A  +++K AYR+LAR+YHPDVNKE GA E+FKEI+ AYEVLSD + RA 
Sbjct: 4   DYYDILGVSRDAGQEDLKQAYRRLARKYHPDVNKEAGAEERFKEINRAYEVLSDPETRAR 63

Query: 138 YDQYGEAGVKSTVGGGSSAYTTNPF-DLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGE 196
           YD++GEAGV     G         F D+FE+ F     GF G+      +RRR+  ++G+
Sbjct: 64  YDRFGEAGVSGAAAGYGDMGDMGGFADIFESIFS----GFGGVGAG--TSRRRTGPSRGD 117

Query: 197 DLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQ 256
           DLR+D+ LEF E+IFG EK+  ++HLETC  C G+GAK G+K R C TCGG GQV R  +
Sbjct: 118 DLRFDLKLEFREAIFGGEKQIRITHLETCTTCNGSGAKPGTKPRTCGTCGGAGQVRRATR 177

Query: 257 TPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGE 316
           TPFG F+QVSVCP+C G+G+VI + C  C G G+ ++ K +K+ +P GV TG+ LRV  E
Sbjct: 178 TPFGSFTQVSVCPTCNGKGQVIEDKCETCGGNGQAQVTKKLKITIPAGVDTGTRLRVSNE 237

Query: 317 GDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISEL 376
           GDAG +GGP GDLYVYL V+E P  +R+GI++ S + ISYL AI+G+ + V TV+G  EL
Sbjct: 238 GDAGQQGGPAGDLYVYLFVQEDPEFRREGINILSEVKISYLQAILGSRLMVNTVDGEVEL 297

Query: 377 QVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRI 419
            +PPGTQP  VL L   G P+L  P  RGDHL TV + IP RI
Sbjct: 298 TIPPGTQPNTVLTLENHGVPRLGNPVSRGDHLITVLLEIPTRI 340

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Cyanothece sp. (strain PCC 7425 / ATCC 29141) (taxid: 395961)

>sp|Q114R3|DNAJ_TRIEI Chaperone protein DnaJ OS=Trichodesmium erythraeum (strain IMS101) GN=dnaJ PE=3 SV=1

 Score =  365 bits (937), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 179/342 (52%), Positives = 232/342 (67%), Gaps = 6/342 (1%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
           DYY  LGV +SA  +E+K AYR+LAR+YHPDVNKEPG+ E+FKEI+ AYE+LSD + +A 
Sbjct: 4   DYYEILGVSRSADKEELKRAYRRLARKYHPDVNKEPGSEERFKEINRAYEILSDPEMKAR 63

Query: 138 YDQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGED 197
           +D++GEAGV    GG +S ++T+  D F   F     GF G    G   RRR+   +G+D
Sbjct: 64  FDRFGEAGVS---GGAASGFSTDFSDSFADIFESFFSGFGGAGTQG---RRRTGPVRGDD 117

Query: 198 LRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQT 257
           LR D+ LEF E+IFG +KE  + HLETC  C G+GAK G+K + CSTCGG GQV R  +T
Sbjct: 118 LRLDLNLEFIEAIFGGDKELTIKHLETCGTCNGSGAKPGTKPQTCSTCGGTGQVRRATRT 177

Query: 258 PFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEG 317
           PF  F+QVSVCPSC G G++I E C  C G G+    K IK+ +P GV  G+ LRV  EG
Sbjct: 178 PFSSFTQVSVCPSCNGSGQIIEEKCVDCGGRGQKEATKKIKITIPGGVDNGTRLRVSNEG 237

Query: 318 DAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQ 377
           DAG  GGPPGDLYV+L V+  P  QRDGI++ S I ISYL AI+G  +++ TV+G +EL 
Sbjct: 238 DAGRMGGPPGDLYVFLSVKNHPEFQRDGINIISQIKISYLQAILGCCLEINTVDGKTELT 297

Query: 378 VPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRI 419
           +P GTQP  +L L  KG P+L     RG HL T+++ IP +I
Sbjct: 298 IPSGTQPNAILTLEDKGVPRLGNSVSRGAHLITIEIDIPTKI 339

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Trichodesmium erythraeum (strain IMS101) (taxid: 203124)

>sp|B0JW23|DNAJ_MICAN Chaperone protein DnaJ OS=Microcystis aeruginosa (strain NIES-843) GN=dnaJ PE=3 SV=1

 Score =  365 bits (937), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 182/342 (53%), Positives = 227/342 (66%), Gaps = 5/342 (1%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
           DYY  LGV + A  ++IK AYR+LAR+YHPDVNKEPGA E FKEI+ AYE+LS+ + R  
Sbjct: 4   DYYEILGVSRDAGKEDIKRAYRRLARKYHPDVNKEPGAEEHFKEINRAYEILSEPETRNR 63

Query: 138 YDQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGED 197
           YD++GEAGV     G          D+FET F     GF GM       RRR+  T+GED
Sbjct: 64  YDRFGEAGVSGGAAGFDPDNMGGFADIFETIFS----GFGGMGGQAT-ARRRTGPTRGED 118

Query: 198 LRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQT 257
           LR D  L+F E++FG EKE  + HLETC+ C G+GA+ G+  R C+TC G GQV R  +T
Sbjct: 119 LRLDFRLKFREAVFGGEKEIRIRHLETCQTCKGSGARPGTSSRTCTTCSGTGQVRRATRT 178

Query: 258 PFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEG 317
           PFG F+QVSVCP+C G GEVI E C  C G GR +  K +K+ +P GV  G  LRV  EG
Sbjct: 179 PFGTFAQVSVCPTCDGAGEVIEEKCDVCGGSGRRQETKKLKITIPAGVDNGMKLRVAREG 238

Query: 318 DAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQ 377
           DAG +GGPPGDL+VYL VE     QR+G D+ S I+ISY+ AI+G  +KV TV+G  +L 
Sbjct: 239 DAGLKGGPPGDLFVYLTVETDAEFQREGNDIKSDITISYIQAILGCTIKVNTVDGQEDLT 298

Query: 378 VPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRI 419
           +P GTQP  VL+L  KG PKL  P  RGDH  TVK++IP R+
Sbjct: 299 IPAGTQPNTVLILENKGVPKLGNPVSRGDHRITVKISIPTRV 340

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Microcystis aeruginosa (strain NIES-843) (taxid: 449447)

>sp|Q7VEJ6|DNAJ_PROMA Chaperone protein DnaJ OS=Prochlorococcus marinus (strain SARG / CCMP1375 / SS120) GN=dnaJ PE=3 SV=1

 Score =  358 bits (919), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 175/342 (51%), Positives = 241/342 (70%), Gaps = 5/342 (1%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
           D+Y TLGV ++A    +K AYR+LARQYHPD+NKE GA E+FKEI  AYEVL D +KRA 
Sbjct: 3   DFYDTLGVNRNADADSLKRAYRRLARQYHPDINKEAGAEERFKEIGRAYEVLGDPEKRAR 62

Query: 138 YDQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGED 197
           YDQ+GEAG+  + G           D+FETFF    G       +G RT+RR    +G+D
Sbjct: 63  YDQFGEAGLGGSAGMPDMGDMGGFADIFETFFSGFGG----PGSSGARTQRRGP-QQGDD 117

Query: 198 LRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQT 257
           LRYD+ ++F++++FG E+E ++ HLETC+VC GTGAK G+    CSTCGG GQV R  +T
Sbjct: 118 LRYDLTIDFNQAVFGQEREIKIPHLETCDVCRGTGAKPGTGPTTCSTCGGAGQVRRATRT 177

Query: 258 PFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEG 317
           PFG F+QVS CP+C G G+VIS+ C+ C G+G  +++K +++ +P GV TG+ LRV GEG
Sbjct: 178 PFGSFTQVSDCPTCSGSGQVISDSCQSCGGQGVKQVRKKLRINIPAGVDTGTRLRVSGEG 237

Query: 318 DAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQ 377
           +AGPRGGP GDLYV+L V+    ++RDG+++ S +++SYL AI+G  ++V TV+G + LQ
Sbjct: 238 NAGPRGGPSGDLYVFLKVKSHARLKRDGLNIHSEVNVSYLQAILGDTIEVDTVDGPTTLQ 297

Query: 378 VPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRI 419
           +P GTQP  VL+L  KG PKL  P  RG+H  +V + IP+R+
Sbjct: 298 IPSGTQPSAVLILDNKGIPKLGNPVARGNHCISVNIKIPSRL 339

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Prochlorococcus marinus (strain SARG / CCMP1375 / SS120) (taxid: 167539)

>sp|Q2JW78|DNAJ_SYNJA Chaperone protein DnaJ OS=Synechococcus sp. (strain JA-3-3Ab) GN=dnaJ PE=3 SV=1

 Score =  354 bits (909), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 188/358 (52%), Positives = 238/358 (66%), Gaps = 28/358 (7%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
           DYY  LGV + +S +EIK AYR+LAR+YHPDVNKEPGA ++FKEI+ AYEVLSDD+ RA 
Sbjct: 4   DYYEILGVSRDSSKEEIKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDDELRAR 63

Query: 138 YDQYGEAG----------VKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTR 187
           YD++GEAG           +   G G  A      DLFE+FF    GG  G       +R
Sbjct: 64  YDRFGEAGLSGAAAAASGFQDFAGIGGFA------DLFESFFTNFAGGGVGY------SR 111

Query: 188 RRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGG 247
            R    +G+DLR+D+ LEF E+IFG EK+  +SHLE C VC G+GAK G+ +++C TCGG
Sbjct: 112 SRQGPVRGDDLRFDLKLEFLEAIFGGEKQIRISHLEVCPVCGGSGAKPGTDVKVCPTCGG 171

Query: 248 RGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVST 307
            GQV R  +TPFG F+QVS+CP+CGG G V+ E C  C+GEG  +  K +++ +P GV +
Sbjct: 172 AGQVRRATRTPFGNFTQVSICPTCGGAGRVLEEPCYNCNGEGLAQTTKKLRINIPAGVDS 231

Query: 308 GSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKV 367
           G+ LRV GEGDAG RGGPPGDLYVYL VE  P  QRDG+ +FS + +SYL AI+G  V V
Sbjct: 232 GTRLRVSGEGDAGRRGGPPGDLYVYLFVEPDPDFQRDGLTIFSQVRVSYLQAILGAKVLV 291

Query: 368 KTV------EGISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRI 419
            TV      E  +EL +P G+QPG VL L  KG P+L  P +RGDH  T+ V IP RI
Sbjct: 292 PTVDSKAGLEEEAELTIPAGSQPGTVLTLEGKGVPRLGNPMLRGDHKITLVVEIPTRI 349

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Synechococcus sp. (strain JA-3-3Ab) (taxid: 321327)

>sp|Q55505|DNAJ1_SYNY3 Chaperone protein DnaJ 1 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=dnaJ1 PE=3 SV=1

 Score =  352 bits (903), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 187/347 (53%), Positives = 233/347 (67%), Gaps = 10/347 (2%)

Query: 77  GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRA 136
           GDYY TLGV + A   EIK AYR+LAR+YHPDVNKEPGA EKFKEI+ AYEVLS+ + R 
Sbjct: 3   GDYYQTLGVTRDADKDEIKRAYRRLARKYHPDVNKEPGAEEKFKEINRAYEVLSEPEIRQ 62

Query: 137 MYDQYGEAGVKSTVGGGSSAYTTNPF----DLFETFFGPSMGGFPGMNQTGFRTRRRSTV 192
            YDQ+GEAGV    GGG+  +         D+FET FG   GG  G  +   R    +  
Sbjct: 63  RYDQFGEAGVS---GGGAQGFDVGNMGDFADIFETIFGGFGGGMGGQQRGRRRA---NGP 116

Query: 193 TKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVM 252
           T+G+DLR D+ L F E+IFG EKE  + HLE+C+VC GTGAK G+ ++ C TC G GQV 
Sbjct: 117 TRGDDLRLDLQLTFQEAIFGGEKEIRIPHLESCQVCEGTGAKPGTGVKTCGTCNGAGQVR 176

Query: 253 RTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILR 312
           R  +TPFG F+QVS CP+C G GEVI + C  C+G GR +  K +K+ +P GV  G+ LR
Sbjct: 177 RATRTPFGSFAQVSACPTCNGSGEVIEQKCEACNGVGRKQETKKLKITIPAGVDDGTRLR 236

Query: 313 VVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEG 372
           V  EGDAG RGGP GDLYV+L VE      R+G+++ S + +SYL AI+G  ++V TV+G
Sbjct: 237 VGKEGDAGLRGGPAGDLYVFLMVETDKHFVREGMNIRSNLEVSYLQAILGCRLEVDTVDG 296

Query: 373 ISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRI 419
            +EL +P GTQP  VL L  KG PKL   +IRGDHL TVKV IP RI
Sbjct: 297 KAELTIPAGTQPNTVLTLENKGVPKLGNATIRGDHLITVKVQIPTRI 343

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|Q2JH49|DNAJ_SYNJB Chaperone protein DnaJ OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=dnaJ PE=3 SV=1

 Score =  346 bits (887), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 183/358 (51%), Positives = 238/358 (66%), Gaps = 28/358 (7%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
           DYY  LGV + +S +EIK AYR+LAR+YHPDVNKEPGA E+FKEI+ AYEVLSD++ +A 
Sbjct: 4   DYYEILGVSRDSSKEEIKRAYRRLARKYHPDVNKEPGAEERFKEINRAYEVLSDNELKAR 63

Query: 138 YDQYGEAG----------VKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTR 187
           YD++GEAG           +   G G  A      D+FE+FF      F G   +  R+R
Sbjct: 64  YDRFGEAGLSGAAAAASGFQDFAGMGGFA------DIFESFFT----NFAGAGASYARSR 113

Query: 188 RRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGG 247
           +     +G+DLR+D+ LEF E+IFG EK+  +SHLE C VC G+GAK G++++ C TCGG
Sbjct: 114 Q--GPVRGDDLRFDLKLEFLEAIFGGEKQIRISHLEVCNVCGGSGAKPGTEVKTCPTCGG 171

Query: 248 RGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVST 307
            GQV R  +TPFG F+QVSVCP+CGG G+V+ E C  C+GEG  +  K +++ +P GV +
Sbjct: 172 SGQVRRATRTPFGNFTQVSVCPTCGGSGQVLEEPCYNCNGEGLAQTTKKLRINIPAGVDS 231

Query: 308 GSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKV 367
           G+ LRV GEGDAG RGGPPGDLYVYL VE  P  QRDG+ + S + +SYL AI+G  V V
Sbjct: 232 GTRLRVSGEGDAGRRGGPPGDLYVYLFVEPDPDFQRDGLTILSEVRVSYLQAILGAKVSV 291

Query: 368 KTVEGIS------ELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRI 419
            TV+  +      EL +P G+QPG VL L  KG P++  P  RGDH  T+ V IP RI
Sbjct: 292 PTVDSKAGLEEEVELTIPAGSQPGTVLTLEGKGVPRIGNPMSRGDHQITLVVEIPTRI 349

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Synechococcus sp. (strain JA-2-3B'a(2-13)) (taxid: 321332)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	446
449468934	505	PREDICTED: chaperone protein DnaJ-like [	0.872	0.770	0.831	0.0
356554947	489	PREDICTED: chaperone protein DnaJ-like i	0.908	0.828	0.789	0.0
356554945	493	PREDICTED: chaperone protein DnaJ-like i	0.908	0.821	0.789	0.0
224134931	492	predicted protein [Populus trichocarpa]	0.778	0.705	0.902	0.0
255553237	511	chaperone protein DNAj, putative [Ricinu	0.860	0.751	0.834	0.0
357455281	496	Chaperone protein dnaJ [Medicago truncat	0.878	0.790	0.804	0.0
1707657	498	DnaJ homologue [Pisum sativum]	0.894	0.801	0.786	0.0
359482375	489	PREDICTED: chaperone protein DnaJ-like [	0.773	0.705	0.869	0.0
297839937	492	hypothetical protein ARALYDRAFT_895995 [	0.860	0.780	0.766	1e-175
18412605	500	molecular chaperone Hsp40/DnaJ-like prot	0.865	0.772	0.756	1e-174

>gi|449468934|ref|XP_004152176.1| PREDICTED: chaperone protein DnaJ-like [Cucumis sativus] gi|449522377|ref|XP_004168203.1| PREDICTED: chaperone protein DnaJ-like [Cucumis sativus]

 Score =  665 bits (1715), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/391 (83%), Positives = 354/391 (90%), Gaps = 2/391 (0%)

Query: 29  GGTHLRSHKNFAALTLSADSCPFGGSKLNSSNARSSTYRFGRSVVCASGDYYATLGVPKS 88
           GGT LR HKNF ++   + +          +   SS  R G  VVCASGDYYATLG+PKS
Sbjct: 33  GGTQLRFHKNFLSVHSYSFNSSPSSPNSRFNKRVSSRRRLGL-VVCASGDYYATLGIPKS 91

Query: 89  ASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKS 148
           A+ KEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRA+YDQYGEAGVKS
Sbjct: 92  ANSKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRALYDQYGEAGVKS 151

Query: 149 TVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSE 208
           TVGG SSAYTTNPFDLFETFFGPSMGGF GM+ TGFRTRR ST+TKGED+RYDI L  SE
Sbjct: 152 TVGG-SSAYTTNPFDLFETFFGPSMGGFGGMDPTGFRTRRSSTLTKGEDIRYDINLGSSE 210

Query: 209 SIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVC 268
           +IFG+EKEFELSHLETCEVCTGTG+K+GSKMRICSTCGGRGQVMRT+QTPFGLFSQVSVC
Sbjct: 211 AIFGSEKEFELSHLETCEVCTGTGSKVGSKMRICSTCGGRGQVMRTEQTPFGLFSQVSVC 270

Query: 269 PSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGD 328
           P+CGG GEVIS++CRKCSGEGRIR+KKNIKVKVPPGVS GSILRV GEGDAGPRGGPPGD
Sbjct: 271 PNCGGNGEVISDFCRKCSGEGRIRVKKNIKVKVPPGVSAGSILRVAGEGDAGPRGGPPGD 330

Query: 329 LYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVL 388
           L+VYLDVEEIPGIQRDGI+L+STI+ISYLDAIMG+VVKVKTVEG++ELQ+PPGTQPGDVL
Sbjct: 331 LFVYLDVEEIPGIQRDGINLYSTIAISYLDAIMGSVVKVKTVEGMAELQIPPGTQPGDVL 390

Query: 389 VLAKKGAPKLNKPSIRGDHLFTVKVTIPNRI 419
           VLAKKG PKLNKPSIRGDHLFT+KVTIPNRI
Sbjct: 391 VLAKKGVPKLNKPSIRGDHLFTIKVTIPNRI 421

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554947|ref|XP_003545802.1| PREDICTED: chaperone protein DnaJ-like isoform 2 [Glycine max]

 Score =  655 bits (1691), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/414 (78%), Positives = 360/414 (86%), Gaps = 9/414 (2%)

Query: 6   TTLTLLPHPSLSFSHSSSSSFLAGGTHLRSHKNFAALTLSADSCPFGGSKLNSSNARSST 65
           TTL+LLP         S+     G  HLRSH +F ++  ++ S     S ++  N  S T
Sbjct: 4   TTLSLLP--------PSTRPCFCGTVHLRSHNSFLSIHSTSSSSFLSFSSISIPN-HSPT 54

Query: 66  YRFGRSVVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAA 125
            R   +V+ +S DYY+TLGVPKSA+GKEIKAAYR+LARQYHPDVNKEPGATEKFKEISAA
Sbjct: 55  RRPFHTVLASSSDYYSTLGVPKSATGKEIKAAYRRLARQYHPDVNKEPGATEKFKEISAA 114

Query: 126 YEVLSDDKKRAMYDQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFR 185
           YEVLSDDKKRA+YDQYGEAGVKS VGGGSSAYTTNPFDLFETFFGPSMGGF GM+ TGF 
Sbjct: 115 YEVLSDDKKRALYDQYGEAGVKSAVGGGSSAYTTNPFDLFETFFGPSMGGFGGMDPTGFG 174

Query: 186 TRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTC 245
           TRRRSTVTKGED+RY+  LEFSE+IFG EKEFELSHLETCEVCTGTGAK+GSKMR+CSTC
Sbjct: 175 TRRRSTVTKGEDIRYNFSLEFSEAIFGKEKEFELSHLETCEVCTGTGAKIGSKMRVCSTC 234

Query: 246 GGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGV 305
           GGRGQVMRT+QTPFGLFSQVSVCP+CGG+GEVISEYCRKC+GEGRIR+KKNIKVKVPPGV
Sbjct: 235 GGRGQVMRTEQTPFGLFSQVSVCPNCGGDGEVISEYCRKCNGEGRIRVKKNIKVKVPPGV 294

Query: 306 STGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVV 365
           S+GSILRV GEGDAGPRGGPPGDLYVYLDV+EIPGIQRD I+L S +SISYLDAI G VV
Sbjct: 295 SSGSILRVTGEGDAGPRGGPPGDLYVYLDVQEIPGIQRDDINLVSMLSISYLDAIRGAVV 354

Query: 366 KVKTVEGISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRI 419
           KVKTVEGISELQ+P GTQPGDVLVLA+KG PKLNKPSIRGDHLFTVKVTIP RI
Sbjct: 355 KVKTVEGISELQIPAGTQPGDVLVLARKGVPKLNKPSIRGDHLFTVKVTIPKRI 408

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554945|ref|XP_003545801.1| PREDICTED: chaperone protein DnaJ-like isoform 1 [Glycine max]

 Score =  655 bits (1690), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/414 (78%), Positives = 360/414 (86%), Gaps = 9/414 (2%)

Query: 6   TTLTLLPHPSLSFSHSSSSSFLAGGTHLRSHKNFAALTLSADSCPFGGSKLNSSNARSST 65
           TTL+LLP         S+     G  HLRSH +F ++  ++ S     S ++  N  S T
Sbjct: 4   TTLSLLP--------PSTRPCFCGTVHLRSHNSFLSIHSTSSSSFLSFSSISIPN-HSPT 54

Query: 66  YRFGRSVVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAA 125
            R   +V+ +S DYY+TLGVPKSA+GKEIKAAYR+LARQYHPDVNKEPGATEKFKEISAA
Sbjct: 55  RRPFHTVLASSSDYYSTLGVPKSATGKEIKAAYRRLARQYHPDVNKEPGATEKFKEISAA 114

Query: 126 YEVLSDDKKRAMYDQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFR 185
           YEVLSDDKKRA+YDQYGEAGVKS VGGGSSAYTTNPFDLFETFFGPSMGGF GM+ TGF 
Sbjct: 115 YEVLSDDKKRALYDQYGEAGVKSAVGGGSSAYTTNPFDLFETFFGPSMGGFGGMDPTGFG 174

Query: 186 TRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTC 245
           TRRRSTVTKGED+RY+  LEFSE+IFG EKEFELSHLETCEVCTGTGAK+GSKMR+CSTC
Sbjct: 175 TRRRSTVTKGEDIRYNFSLEFSEAIFGKEKEFELSHLETCEVCTGTGAKIGSKMRVCSTC 234

Query: 246 GGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGV 305
           GGRGQVMRT+QTPFGLFSQVSVCP+CGG+GEVISEYCRKC+GEGRIR+KKNIKVKVPPGV
Sbjct: 235 GGRGQVMRTEQTPFGLFSQVSVCPNCGGDGEVISEYCRKCNGEGRIRVKKNIKVKVPPGV 294

Query: 306 STGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVV 365
           S+GSILRV GEGDAGPRGGPPGDLYVYLDV+EIPGIQRD I+L S +SISYLDAI G VV
Sbjct: 295 SSGSILRVTGEGDAGPRGGPPGDLYVYLDVQEIPGIQRDDINLVSMLSISYLDAIRGAVV 354

Query: 366 KVKTVEGISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRI 419
           KVKTVEGISELQ+P GTQPGDVLVLA+KG PKLNKPSIRGDHLFTVKVTIP RI
Sbjct: 355 KVKTVEGISELQIPAGTQPGDVLVLARKGVPKLNKPSIRGDHLFTVKVTIPKRI 408

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134931|ref|XP_002327525.1| predicted protein [Populus trichocarpa] gi|222836079|gb|EEE74500.1| predicted protein [Populus trichocarpa]

 Score =  654 bits (1687), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/347 (90%), Positives = 331/347 (95%)

Query: 73  VCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDD 132
           V ASGDYYATLGVPKSA+ KEIKAAYR+LARQYHPDVNKEPGATEKFKEIS+AYEVLSDD
Sbjct: 65  VYASGDYYATLGVPKSATSKEIKAAYRRLARQYHPDVNKEPGATEKFKEISSAYEVLSDD 124

Query: 133 KKRAMYDQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTV 192
           KKR++YDQYGEAGVKSTVGG SSAYTTNPFDLFETFFG SMGGFPGM QTGF+TRRRSTV
Sbjct: 125 KKRSLYDQYGEAGVKSTVGGPSSAYTTNPFDLFETFFGASMGGFPGMEQTGFKTRRRSTV 184

Query: 193 TKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVM 252
           TKGED+RYDI LEFSE+IFGAEKEFELSHLETCEVC GTGAKMGSKMRICSTCGGRGQVM
Sbjct: 185 TKGEDIRYDISLEFSEAIFGAEKEFELSHLETCEVCAGTGAKMGSKMRICSTCGGRGQVM 244

Query: 253 RTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILR 312
           RT+QTPFGLFSQVSVCP+CGG+GEVISEYCRKCSGEGRIR+KKNIKVKVPPGV  GSILR
Sbjct: 245 RTEQTPFGLFSQVSVCPNCGGDGEVISEYCRKCSGEGRIRVKKNIKVKVPPGVGAGSILR 304

Query: 313 VVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEG 372
           V  EGDAGPRGGP GDLYVYLDVEEI GIQRDGI+L STISISY DAI+GTVVKVKTVEG
Sbjct: 305 VAREGDAGPRGGPLGDLYVYLDVEEIRGIQRDGINLTSTISISYADAILGTVVKVKTVEG 364

Query: 373 ISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRI 419
           +SELQ+PPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFT+KVTIP R+
Sbjct: 365 MSELQIPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTIKVTIPKRV 411

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553237|ref|XP_002517661.1| chaperone protein DNAj, putative [Ricinus communis] gi|223543293|gb|EEF44825.1| chaperone protein DNAj, putative [Ricinus communis]

 Score =  654 bits (1687), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/387 (83%), Positives = 354/387 (91%), Gaps = 3/387 (0%)

Query: 32  HLRSHKNFAALTLSADSCPFGGSKLNSSNARSSTYRFGRSVVCASGDYYATLGVPKSASG 91
           HL SHK F++L L++    F     +SS++ SS  R+G  +  ASGDYYATLGVPKSA+ 
Sbjct: 48  HLWSHKKFSSLALTS-PLKFKTKTASSSSSSSSNNRYGPEI-NASGDYYATLGVPKSATS 105

Query: 92  KEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVG 151
           KEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDD KR+MYD+YGEAGVKS VG
Sbjct: 106 KEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDNKRSMYDRYGEAGVKSAVG 165

Query: 152 GGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIF 211
           G SSAYTTNPFDLFETFFG SMGGFPG+ +TGF TRRRSTVTKGEDLRYDI LEFSE+IF
Sbjct: 166 GASSAYTTNPFDLFETFFGSSMGGFPGV-ETGFGTRRRSTVTKGEDLRYDITLEFSEAIF 224

Query: 212 GAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSC 271
           GAEKEF+LSHLETCEVCTGTGAK+GSKMRICSTCGGRGQVMRT+QTPFGLFSQVSVCP+C
Sbjct: 225 GAEKEFDLSHLETCEVCTGTGAKIGSKMRICSTCGGRGQVMRTEQTPFGLFSQVSVCPTC 284

Query: 272 GGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYV 331
           GGEGEVISEYCRKCSGEGRIR++KNIKVKVPPGVSTGSILRV GEGDAGPRGGPPGDL+V
Sbjct: 285 GGEGEVISEYCRKCSGEGRIRVRKNIKVKVPPGVSTGSILRVAGEGDAGPRGGPPGDLFV 344

Query: 332 YLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLA 391
           YLDV+EI GIQRDGI+L STI+ISYLDAI+G VVKVKTVEG+S+LQ+  GTQPGDVLVLA
Sbjct: 345 YLDVQEISGIQRDGINLNSTITISYLDAILGAVVKVKTVEGMSDLQILAGTQPGDVLVLA 404

Query: 392 KKGAPKLNKPSIRGDHLFTVKVTIPNR 418
           KKGAPKLNKPSIRGDHLFT+KVTIP+R
Sbjct: 405 KKGAPKLNKPSIRGDHLFTIKVTIPSR 431

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357455281|ref|XP_003597921.1| Chaperone protein dnaJ [Medicago truncatula] gi|355486969|gb|AES68172.1| Chaperone protein dnaJ [Medicago truncatula]

 Score =  652 bits (1683), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/398 (80%), Positives = 350/398 (87%), Gaps = 6/398 (1%)

Query: 24  SSFLAGGTHLRSHKNFAALTLSADSCPFGGSKLNSSNARSSTYRFGR--SVVCASGDYYA 81
           S F AGG HLRSH NF    LS  S PF  +  NS+   SS  R  R  +V  AS DYY+
Sbjct: 18  SCFCAGGIHLRSHNNF----LSIHSSPFPSTFSNSNTKFSSGTRPKRFHTVFAASSDYYS 73

Query: 82  TLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQY 141
           TLGVPKSA+GKEIKAAYR+LARQYHPDVNKEPGAT+KFKEIS AYEVLSDDKKRA+YDQY
Sbjct: 74  TLGVPKSATGKEIKAAYRRLARQYHPDVNKEPGATDKFKEISNAYEVLSDDKKRALYDQY 133

Query: 142 GEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYD 201
           GEAGVKS+VGGGSSAY TNPFDLFETFFGP+MGGF  M+ +GF TRRRSTVTKGED+RYD
Sbjct: 134 GEAGVKSSVGGGSSAYATNPFDLFETFFGPNMGGFSTMDPSGFGTRRRSTVTKGEDIRYD 193

Query: 202 IVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGL 261
             LEFSE+IFG EKEFEL HLETC+ CTGTGAK+GSKMR+CSTCGGRGQVMRT+QTPFGL
Sbjct: 194 FSLEFSEAIFGTEKEFELFHLETCDACTGTGAKLGSKMRVCSTCGGRGQVMRTEQTPFGL 253

Query: 262 FSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGP 321
           FSQVSVCP+CGG+GEVISE CRKCSGEGRIR+KKNIKVKVPPGVS GSILRV GEGDAGP
Sbjct: 254 FSQVSVCPNCGGDGEVISESCRKCSGEGRIRVKKNIKVKVPPGVSAGSILRVTGEGDAGP 313

Query: 322 RGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPG 381
           RGGPPGDLYVYL+V EIPGIQRD ++L STISISYL+AI+G+VVKVKTVEG SELQ+P G
Sbjct: 314 RGGPPGDLYVYLNVLEIPGIQRDDVNLRSTISISYLEAILGSVVKVKTVEGTSELQIPAG 373

Query: 382 TQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRI 419
           TQPGDVLVLA+KG PKLN+PSIRGDHLFTVKVTIP RI
Sbjct: 374 TQPGDVLVLARKGVPKLNRPSIRGDHLFTVKVTIPKRI 411

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1707657|emb|CAA96305.1| DnaJ homologue [Pisum sativum]

 Score =  644 bits (1661), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 314/399 (78%), Positives = 346/399 (86%)

Query: 21  SSSSSFLAGGTHLRSHKNFAALTLSADSCPFGGSKLNSSNARSSTYRFGRSVVCASGDYY 80
           ++ S F A G H RSH             PF  +  NS++  S+  +   +V  AS DYY
Sbjct: 14  TTHSCFCASGIHFRSHTTTNNFLSIHSPSPFPSTFSNSNSKFSARRKRFHTVFAASSDYY 73

Query: 81  ATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQ 140
           ATLGVPKSA+ K+IKAAYR+LARQYHPDVNKEPGAT+KFKEIS AYEVLSDDKKRA+YDQ
Sbjct: 74  ATLGVPKSATVKDIKAAYRRLARQYHPDVNKEPGATDKFKEISNAYEVLSDDKKRALYDQ 133

Query: 141 YGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRY 200
           YGEAGVKS+VGGGSSAY TNPFDLFETFFG +MGGF GM+ TGF TRRRSTVTKGED+RY
Sbjct: 134 YGEAGVKSSVGGGSSAYATNPFDLFETFFGSNMGGFGGMDPTGFGTRRRSTVTKGEDIRY 193

Query: 201 DIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFG 260
           D  LEFSE+IFGAEKEFEL HLETCEVCTGTGAK+GSKMR+CSTCGGRGQVMRT+QTPFG
Sbjct: 194 DFSLEFSEAIFGAEKEFELFHLETCEVCTGTGAKLGSKMRVCSTCGGRGQVMRTEQTPFG 253

Query: 261 LFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAG 320
           LFSQVSVCP+CGG+GEVISE CRKCSG GRIR+KKN+KVKVPPGVS+GSILRV GEGDAG
Sbjct: 254 LFSQVSVCPNCGGDGEVISENCRKCSGAGRIRVKKNMKVKVPPGVSSGSILRVTGEGDAG 313

Query: 321 PRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPP 380
           PRGGPPGDLYVYLDV EIPGIQRD I+L STISI+YLDAI+G+VVKVKTVEG SELQ+P 
Sbjct: 314 PRGGPPGDLYVYLDVLEIPGIQRDDINLRSTISITYLDAILGSVVKVKTVEGTSELQIPS 373

Query: 381 GTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRI 419
           GTQPGDVLVLAKKG PKLN+PSIRGDHLFTVKVTIP RI
Sbjct: 374 GTQPGDVLVLAKKGVPKLNRPSIRGDHLFTVKVTIPKRI 412

Source: Pisum sativum

Species: Pisum sativum

Genus: Pisum

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482375|ref|XP_002265060.2| PREDICTED: chaperone protein DnaJ-like [Vitis vinifera] gi|297743480|emb|CBI36347.3| unnamed protein product [Vitis vinifera]

 Score =  639 bits (1649), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 300/345 (86%), Positives = 330/345 (95%)

Query: 75  ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKK 134
           AS DYY+TLGVPKSA+ KEIKAAYRKLARQYHPDVNK+PGATEKFKEISAAYEVLSDDKK
Sbjct: 67  ASSDYYSTLGVPKSANSKEIKAAYRKLARQYHPDVNKQPGATEKFKEISAAYEVLSDDKK 126

Query: 135 RAMYDQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTK 194
           RA+YDQ+GEAGVKS VGG + AYTTNPFDLFETFFGPSMGGF GM+Q GFRTRRR+TV+K
Sbjct: 127 RALYDQFGEAGVKSGVGGQAGAYTTNPFDLFETFFGPSMGGFSGMDQAGFRTRRRTTVSK 186

Query: 195 GEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRT 254
           GED+RYD+ L+FSE+IFGAEKEFELSHLETCEVCTGTGAK+GSKMRICSTCGGRGQVMRT
Sbjct: 187 GEDIRYDMTLKFSEAIFGAEKEFELSHLETCEVCTGTGAKIGSKMRICSTCGGRGQVMRT 246

Query: 255 DQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVV 314
           +QTPFGLFSQVSVCP+CGG+GEVISEYCRKCSGEGRIR+KK+IKVKVPPGVS GSILRV 
Sbjct: 247 EQTPFGLFSQVSVCPTCGGDGEVISEYCRKCSGEGRIRVKKDIKVKVPPGVSKGSILRVA 306

Query: 315 GEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGIS 374
           GEGDAG RGGPPGDL+VYLDVEEIP IQRDGI+L ST+++SYLDAI+G VVKVKTVEG++
Sbjct: 307 GEGDAGLRGGPPGDLFVYLDVEEIPEIQRDGINLCSTVTVSYLDAILGAVVKVKTVEGVT 366

Query: 375 ELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRI 419
           ELQ+P GTQPGDVLVLAKKGAPKLN+P+IRGDHLFTVKVTIPNRI
Sbjct: 367 ELQIPSGTQPGDVLVLAKKGAPKLNRPTIRGDHLFTVKVTIPNRI 411

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297839937|ref|XP_002887850.1| hypothetical protein ARALYDRAFT_895995 [Arabidopsis lyrata subsp. lyrata] gi|297333691|gb|EFH64109.1| hypothetical protein ARALYDRAFT_895995 [Arabidopsis lyrata subsp. lyrata]

 Score =  621 bits (1601), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 305/398 (76%), Positives = 343/398 (86%), Gaps = 14/398 (3%)

Query: 22  SSSSFLAGGTHLRSHKNFAALTLSADSCPFGGSKLNSSNARSSTYRFGRSVVCASGDYYA 81
           S SS   GGT+LR HK+F +L+ S+   P+   +  S             V  ASGDYYA
Sbjct: 26  SLSSNFDGGTNLRYHKSFLSLSSSS---PYRNRRCRS-----------LVVFAASGDYYA 71

Query: 82  TLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQY 141
           TLGVPKSA+ KEIKAAYR+LARQYHPDVNKEPGAT+KFKEISAAYEVLSD++KRA+YDQY
Sbjct: 72  TLGVPKSANNKEIKAAYRRLARQYHPDVNKEPGATDKFKEISAAYEVLSDEQKRALYDQY 131

Query: 142 GEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYD 201
           GEAGVKSTVGG S  YTTNPFDLFETFFG SMGGFPG++Q  F   RRS VTKGEDLRYD
Sbjct: 132 GEAGVKSTVGGASGTYTTNPFDLFETFFGASMGGFPGVDQADFGRTRRSRVTKGEDLRYD 191

Query: 202 IVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGL 261
           I LE SE+IFG+EKEF+L+HLETCE C GTGAK GSKMRICSTCGGRGQVMRT+QTPFG+
Sbjct: 192 ITLELSEAIFGSEKEFDLTHLETCEACAGTGAKAGSKMRICSTCGGRGQVMRTEQTPFGM 251

Query: 262 FSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGP 321
           FSQVS+CP+CGG+GEVISE CRKCSGEGR+R KK+IKVK+PPGVS GSILRV GEGD+GP
Sbjct: 252 FSQVSICPNCGGDGEVISENCRKCSGEGRVRTKKSIKVKIPPGVSAGSILRVAGEGDSGP 311

Query: 322 RGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPG 381
           RGGPPGDLYVYLDVE++ GIQRDGI+L ST+SISYLDAI+G VVKVKTVEG +ELQ+PPG
Sbjct: 312 RGGPPGDLYVYLDVEDVRGIQRDGINLLSTLSISYLDAILGAVVKVKTVEGDTELQIPPG 371

Query: 382 TQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRI 419
           TQPGDVLVLAKKG PKLN+PSIRGDHLFTVKV+IPN+I
Sbjct: 372 TQPGDVLVLAKKGVPKLNRPSIRGDHLFTVKVSIPNQI 409

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18412605|ref|NP_565227.1| molecular chaperone Hsp40/DnaJ-like protein [Arabidopsis thaliana] gi|30699481|ref|NP_849910.1| molecular chaperone Hsp40/DnaJ-like protein [Arabidopsis thaliana] gi|30699483|ref|NP_849911.1| molecular chaperone Hsp40/DnaJ-like protein [Arabidopsis thaliana] gi|110739057|dbj|BAF01446.1| hypothetical protein [Arabidopsis thaliana] gi|332198224|gb|AEE36345.1| molecular chaperone Hsp40/DnaJ-like protein [Arabidopsis thaliana] gi|332198225|gb|AEE36346.1| molecular chaperone Hsp40/DnaJ-like protein [Arabidopsis thaliana] gi|332198226|gb|AEE36347.1| molecular chaperone Hsp40/DnaJ-like protein [Arabidopsis thaliana]

 Score =  619 bits (1595), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 304/402 (75%), Positives = 347/402 (86%), Gaps = 16/402 (3%)

Query: 21  SSSSSFLAGGTHLRSHKNFAALTLSADS-CPFGGSKLNSSNARSSTYRFGRSVV--CASG 77
           S+ S+F  GG++ R HK+F +L+ S+ S  P+               R GRS+V    SG
Sbjct: 28  SNFSAFSDGGSNFRYHKSFLSLSSSSSSSTPY-------------RNRRGRSLVVFATSG 74

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
           DYYATLGV KSA+ KEIKAAYR+LARQYHPDVNKEPGATEKFKEISAAYEVLSD++KRA+
Sbjct: 75  DYYATLGVSKSANNKEIKAAYRRLARQYHPDVNKEPGATEKFKEISAAYEVLSDEQKRAL 134

Query: 138 YDQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGED 197
           YDQYGEAGVKSTVGG S  YT+NPFDLFETFFG SMGGFPGM+Q  F   RRS VTKGED
Sbjct: 135 YDQYGEAGVKSTVGGASGPYTSNPFDLFETFFGASMGGFPGMDQADFGRTRRSRVTKGED 194

Query: 198 LRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQT 257
           LRYDI LE SE+IFG+EKEF+L+HLETCE C GTGAK GSKMRICSTCGGRGQVMRT+QT
Sbjct: 195 LRYDITLELSEAIFGSEKEFDLTHLETCEACAGTGAKAGSKMRICSTCGGRGQVMRTEQT 254

Query: 258 PFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEG 317
           PFG+FSQVS+CP+CGG+GEVISE CRKCSGEGR+R+KK+IKVK+PPGVS GSILRV GEG
Sbjct: 255 PFGMFSQVSICPNCGGDGEVISENCRKCSGEGRVRIKKSIKVKIPPGVSAGSILRVAGEG 314

Query: 318 DAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQ 377
           D+GPRGGPPGDLYVYLDVE++ GI+RDGI+L ST+SISYLDAI+G VVKVKTVEG +ELQ
Sbjct: 315 DSGPRGGPPGDLYVYLDVEDVRGIERDGINLLSTLSISYLDAILGAVVKVKTVEGDTELQ 374

Query: 378 VPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRI 419
           +PPGTQPGDVLVLAKKG PKLN+PSIRGDHLFTVKV++PN+I
Sbjct: 375 IPPGTQPGDVLVLAKKGVPKLNRPSIRGDHLFTVKVSVPNQI 416

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	446
TAIR|locus:2016234	500	AT1G80030 [Arabidopsis thalian	0.856	0.764	0.713	3.2e-145
TAIR|locus:2088585	517	AT3G17830 [Arabidopsis thalian	0.793	0.684	0.461	5.9e-89
TAIR|locus:2140035	447	AT4G39960 [Arabidopsis thalian	0.822	0.821	0.489	5.3e-88
TAIR|locus:2041258	442	AT2G22360 [Arabidopsis thalian	0.816	0.823	0.490	6.7e-88
TIGR_CMR|CHY_0416	381	CHY_0416 "chaperone protein dn	0.757	0.887	0.406	6.2e-62
TIGR_CMR|BA_4538	371	BA_4538 "chaperone protein dna	0.748	0.900	0.390	2.7e-61
TIGR_CMR|GSU_0034	373	GSU_0034 "chaperone protein dn	0.733	0.876	0.417	3.9e-60
UNIPROTKB|P95830	378	dnaJ "Chaperone protein DnaJ"	0.742	0.875	0.385	8.1e-60
TIGR_CMR|DET_1398	356	DET_1398 "co-chaperone protein	0.742	0.929	0.365	1.5e-58
UNIPROTKB|P08622	376	dnaJ [Escherichia coli K-12 (t	0.733	0.869	0.377	4.8e-55

TAIR|locus:2016234 AT1G80030 [Arabidopsis thaliana (taxid:3702)]

 Score = 1419 (504.6 bits), Expect = 3.2e-145, P = 3.2e-145
 Identities = 277/388 (71%), Positives = 318/388 (81%)

Query:    38 NFAALTLSADSCPFGGS--KLNSSNARSSTYRF--GRSVV--CASGDYYATLGVPKSASG 91
             NF+A +    +  +  S   L+SS++ S+ YR   GRS+V    SGDYYATLGV KSA+ 
Sbjct:    29 NFSAFSDGGSNFRYHKSFLSLSSSSSSSTPYRNRRGRSLVVFATSGDYYATLGVSKSANN 88

Query:    92 KEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVG 151
             KEIKAAYR+LARQYHPDVNKEPGATEKFKEISAAYEVLSD++KRA+YDQYGEAGVKSTVG
Sbjct:    89 KEIKAAYRRLARQYHPDVNKEPGATEKFKEISAAYEVLSDEQKRALYDQYGEAGVKSTVG 148

Query:   152 GGSSAYTTNPFDLFETXXXXXXXXXXXXNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIF 211
             G S  YT+NPFDLFET            +Q  F   RRS VTKGEDLRYDI LE SE+IF
Sbjct:   149 GASGPYTSNPFDLFETFFGASMGGFPGMDQADFGRTRRSRVTKGEDLRYDITLELSEAIF 208

Query:   212 GAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSC 271
             G+EKEF+L+HLETCE C GTGAK GSKMRICSTCGGRGQVMRT+QTPFG+FSQVS+CP+C
Sbjct:   209 GSEKEFDLTHLETCEACAGTGAKAGSKMRICSTCGGRGQVMRTEQTPFGMFSQVSICPNC 268

Query:   272 GGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVXXXXXXXXXXXXXDLYV 331
             GG+GEVISE CRKCSGEGR+R+KK+IKVK+PPGVS GSILRV              DLYV
Sbjct:   269 GGDGEVISENCRKCSGEGRVRIKKSIKVKIPPGVSAGSILRVAGEGDSGPRGGPPGDLYV 328

Query:   332 YLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLA 391
             YLDVE++ GI+RDGI+L ST+SISYLDAI+G VVKVKTVEG +ELQ+PPGTQPGDVLVLA
Sbjct:   329 YLDVEDVRGIERDGINLLSTLSISYLDAILGAVVKVKTVEGDTELQIPPGTQPGDVLVLA 388

Query:   392 KKGAPKLNKPSIRGDHLFTVKVTIPNRI 419
             KKG PKLN+PSIRGDHLFTVKV++PN+I
Sbjct:   389 KKGVPKLNRPSIRGDHLFTVKVSVPNQI 416

GO:0005524 "ATP binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0009408 "response to heat" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

TAIR|locus:2088585 AT3G17830 [Arabidopsis thaliana (taxid:3702)]

 Score = 888 (317.7 bits), Expect = 5.9e-89, P = 5.9e-89
 Identities = 167/362 (46%), Positives = 245/362 (67%)

Query:    63 SSTYRFGRSVVCASG-DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKE 121
             S  YR  R +  A+G D+Y+TL V ++A+ +EIK++YRKLAR+YHPD+NK PGA +KFK+
Sbjct:    48 SGGYR-RRVITMAAGTDHYSTLNVNRNATLQEIKSSYRKLARKYHPDMNKNPGAEDKFKQ 106

Query:   122 ISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGSSAYT-TNPFDLFETXXXXXXXXXXXXN 180
             ISAAYEVLSD++KR+ YD++GEAG++    G        +PFDL+               
Sbjct:   107 ISAAYEVLSDEEKRSAYDRFGEAGLEGDFNGSQDTSPGVDPFDLYSAFFGGSDGFFGGMG 166

Query:   181 QTG---FRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGS 237
             ++G   F    + ++    D+RYD+ L F E++FG ++E E+S+LETC+ C GTGAK  +
Sbjct:   167 ESGGMGFDFMNKRSLDL--DIRYDLRLSFEEAVFGVKREIEVSYLETCDGCGGTGAKSSN 224

Query:   238 KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNI 297
              ++ CS+C G+G+VM + +TPFG+ SQVS C  CGGEG+ I++ CRKC G GR+R +K +
Sbjct:   225 SIKQCSSCDGKGRVMNSQRTPFGIMSQVSTCSKCGGEGKTITDKCRKCIGNGRLRARKKM 284

Query:   298 KVKVPPGVSTGSILRVVXXXXXXXXXXXXXDLYVYLDVEEIPGIQRDGIDLFSTISISYL 357
              V VPPGVS  + +R+              DL++ L V+E  GI+R+G++L+S I+I + 
Sbjct:   285 DVVVPPGVSDRATMRIQGEGNMDKRSGRAGDLFIVLQVDEKRGIRREGLNLYSNINIDFT 344

Query:   358 DAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPN 417
             DAI+G   KV+TVEG  +L++PPGTQPGD + L +KG P  ++PSIRGDH F VK++IP 
Sbjct:   345 DAILGATTKVETVEGSMDLRIPPGTQPGDTVKLPRKGVPDTDRPSIRGDHCFVVKISIPK 404

Query:   418 RI 419
             ++
Sbjct:   405 KL 406

GO:0005524 "ATP binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0009408 "response to heat" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

TAIR|locus:2140035 AT4G39960 [Arabidopsis thaliana (taxid:3702)]

 Score = 879 (314.5 bits), Expect = 5.3e-88, P = 5.3e-88
 Identities = 182/372 (48%), Positives = 234/372 (62%)

Query:    48 SCPFGGSKLNSSNARSSTYRFGRSVVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHP 107
             S PF    L   +  + + R  R  V A  D+Y+ LGV K+A+  EIK+AYRKLAR YHP
Sbjct:    57 SLPF--LSLTGVSPNTHSRRGARFTVRADTDFYSVLGVSKNATKAEIKSAYRKLARSYHP 114

Query:   108 DVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGSSAYTTNPFDLFET 167
             DVNK+ GA +KFKEIS AYE+LSDD+KR++YD+YGEAGVK    GG   Y+ NPFDLFE+
Sbjct:   115 DVNKDAGAEDKFKEISNAYEILSDDEKRSLYDRYGEAGVKGAGMGGMGDYS-NPFDLFES 173

Query:   168 XXXXXXXXXXXXNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEV 227
                            G R  R S    GED  Y ++L F E++FG EKE E+S LE+C  
Sbjct:   174 LFEGMGGMGGMGGGMGSRGSR-SRAIDGEDEYYSLILNFKEAVFGIEKEIEISRLESCGT 232

Query:   228 CTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSG 287
             C G+GAK G+K   C TCGG+GQV+ + +TP G+F QV  C  C G GE IS+ C  CSG
Sbjct:   233 CNGSGAKAGTKPTKCKTCGGQGQVVASTRTPLGVFQQVMTCSPCNGTGE-ISKPCGACSG 291

Query:   288 EGRIRLKKNIKVKVPPGVSTGSILRVVXXXXXXXXXXXXXDLYVYLDVEEIPGIQRDGID 347
             +GR+R  K I +KVP GV +GS LRV              DL+  ++V   P ++RD  +
Sbjct:   292 DGRVRRTKRISLKVPAGVDSGSRLRVRGEGNAGKRGGSPGDLFAVIEVIPDPVLKRDDTN 351

Query:   348 LFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDH 407
             +  T  ISY+DAI+GT +KV TV+G  +L+VP GTQP   LV+AKKG P LNK  +RGD 
Sbjct:   352 ILYTCKISYVDAILGTTLKVPTVDGEVDLKVPAGTQPSTTLVMAKKGVPVLNKSKMRGDQ 411

Query:   408 LFTVKVTIPNRI 419
             L  V+V IP R+
Sbjct:   412 LVRVQVEIPKRL 423

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0009408 "response to heat" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

TAIR|locus:2041258 AT2G22360 [Arabidopsis thaliana (taxid:3702)]

 Score = 878 (314.1 bits), Expect = 6.7e-88, P = 6.7e-88
 Identities = 184/375 (49%), Positives = 236/375 (62%)

Query:    45 SADSCPFGGSKLNSSNARSSTYRFGRSVVCASGDYYATLGVPKSASGKEIKAAYRKLARQ 104
             S  S PF      S N      R  R  V A  DYY+ LGV K+A+  EIK+AYRKLAR 
Sbjct:    54 SHGSLPFLSMTGMSRNMHPPR-RGSRFTVRADADYYSVLGVSKNATKAEIKSAYRKLARN 112

Query:   105 YHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGSSAYTTNPFDL 164
             YHPDVNK+PGA EKFKEIS AYEVLSDD+K+++YD+YGEAG+K   G G+  ++ NPFDL
Sbjct:   113 YHPDVNKDPGAEEKFKEISNAYEVLSDDEKKSLYDRYGEAGLKGAAGFGNGDFS-NPFDL 171

Query:   165 FETXXXXXXXXXXXXNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLET 224
             F++               G     RS    G+D  Y ++L F E++FG EKE E+S LE+
Sbjct:   172 FDSLFEGFGG--------GMGRGSRSRAVDGQDEYYTLILNFKEAVFGMEKEIEISRLES 223

Query:   225 CEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRK 284
             C  C G+GAK G+K   C+TCGG+GQV+   +TP G+F QV  C SC G GE IS  C  
Sbjct:   224 CGTCEGSGAKPGTKPTKCTTCGGQGQVVSAARTPLGVFQQVMTCSSCNGTGE-ISTPCGT 282

Query:   285 CSGEGRIRLKKNIKVKVPPGVSTGSILRVVXXXXXXXXXXXXXDLYVYLDVEEIPGIQRD 344
             CSG+GR+R  K I +KVP GV +GS LRV              DL+V ++V   P ++RD
Sbjct:   283 CSGDGRVRKTKRISLKVPAGVDSGSRLRVRGEGNAGKRGGSPGDLFVVIEVIPDPILKRD 342

Query:   345 GIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLAKKGAPKLNKPSIR 404
               ++  T  ISY+DAI+GT +KV TV+G  +L+VP GTQP   LV+AKKG P LNK ++R
Sbjct:   343 DTNILYTCKISYIDAILGTTLKVPTVDGTVDLKVPAGTQPSTTLVMAKKGVPVLNKSNMR 402

Query:   405 GDHLFTVKVTIPNRI 419
             GD L  V+V IP R+
Sbjct:   403 GDQLVRVQVEIPKRL 417

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0009408 "response to heat" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

TIGR_CMR|CHY_0416 CHY_0416 "chaperone protein dnaJ" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 633 (227.9 bits), Expect = 6.2e-62, P = 6.2e-62
 Identities = 141/347 (40%), Positives = 197/347 (56%)

Query:    78 DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRA 136
             DYY  LGV ++A+ +EIK AYRKLAR+YHPDVNK+ P A EKFKEI+ AYEVLSD +KRA
Sbjct:     4 DYYEILGVARNATPEEIKKAYRKLARKYHPDVNKDDPNAAEKFKEINEAYEVLSDPEKRA 63

Query:   137 MYDQYGEAGVKSTV---GGGSSAYTTNPFDLFETXXXXXXXXXXXXNQTGFRTRRRSTVT 193
              YDQ+G AGV       GG       N  D+F                +G R  R+  V 
Sbjct:    64 RYDQFGHAGVDGNFAGQGGFGGGAGINFEDIFSGFGGFGDLFDMVFG-SG-RKARQGPVP 121

Query:   194 KGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMR 253
              G+D+   + L   E++FG EKE  ++  ETC  C G GA+ G+ +  C TC GRGQ+ +
Sbjct:   122 -GDDIEAVLELTLEEAVFGGEKELRVTRTETCGHCHGNGAEPGTPIITCPTCQGRGQIHQ 180

Query:   254 TDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRV 313
               +T FG   +  VC +C GEG++    CR+C G G +R  ++I VK+PPG+  G  LR+
Sbjct:   181 EVKTLFGRMVRSQVCSTCRGEGKIPKTPCRECGGSGLVRKTRSITVKIPPGIDHGHRLRI 240

Query:   314 VXXXXXXXXXXXXXDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGI 373
                           DLYVY+ ++     +R+ I L     IS++ A +G  V++ T++G 
Sbjct:   241 AGGGEAGRFGGPPGDLYVYIKIKPHKLFKREDIHLKLEKEISFVQAALGAKVEIPTIDGG 300

Query:   374 SE-LQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRI 419
             +E L++P GTQ G V  +  KG P +N  S RG+   TVKV  P ++
Sbjct:   301 TEILEIPEGTQTGTVFTIKGKGVPVVNG-SGRGNLYVTVKVVTPTKL 346

GO:0006457 "protein folding" evidence=ISS

GO:0009408 "response to heat" evidence=ISS

TIGR_CMR|BA_4538 BA_4538 "chaperone protein dnaJ" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 627 (225.8 bits), Expect = 2.7e-61, P = 2.7e-61
 Identities = 134/343 (39%), Positives = 179/343 (52%)

Query:    78 DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
             DYY  LG+ K AS  EIK AYR+LA++YHPDV+KE  A EKFKE+  AYEVLSDD+KRA 
Sbjct:     5 DYYEVLGLSKGASKDEIKKAYRRLAKKYHPDVSKEENAIEKFKEVQEAYEVLSDDQKRAQ 64

Query:   138 YDQYGEAGVKSTVGG-GSSAYTTNPFDLFETXXXXXXXXXXXXNQTGFRTRRRSTVTKGE 196
             YDQ+G AG     GG G        F  FE                G R R  +   +G 
Sbjct:    65 YDQFGHAGANQGFGGFGGGGDFGGGFG-FEDIFSSFFGGG------GGRRRDPNAPRQGA 117

Query:   197 DLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQ 256
             DL+Y + LEF E+IFG E   E+   + C+ C G+GAK G+    C  C G GQV     
Sbjct:   118 DLQYQVTLEFEEAIFGKELNVEIPVEDPCDTCKGSGAKPGTSKETCKHCSGSGQVSVEQN 177

Query:   257 TPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVXX 316
             TPFG       C  C G G++I E C  C G G++R +K I VK+P G+  G  +RV   
Sbjct:   178 TPFGRIVNRQACSHCSGTGQMIKEKCTTCHGSGKVRKRKKINVKIPAGIDNGQQIRVSGK 237

Query:   317 XXXXXXXXXXXDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISEL 376
                        DLYV + V      +R+G  +   + +++    +G  V+V TV G  +L
Sbjct:   238 GEAGVNGGPAGDLYVVVHVRSHEFFEREGDHIICEMPLTFAQMALGAEVEVPTVHGKVKL 297

Query:   377 QVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRI 419
             ++P GTQ G    L  KGAP +     +GD    V+V +P ++
Sbjct:   298 KIPAGTQTGTEFRLKGKGAPNVRGYG-QGDQYVVVRVVVPTKL 339

GO:0009408 "response to heat" evidence=ISS

TIGR_CMR|GSU_0034 GSU_0034 "chaperone protein dnaJ" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 616 (221.9 bits), Expect = 3.9e-60, P = 3.9e-60
 Identities = 145/347 (41%), Positives = 192/347 (55%)

Query:    78 DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPG-ATEKFKEISAAYEVLSDDKKRA 136
             DYY  LGV K+AS  EIK A+RKLA QYHPD N +   A EKFKEI+ AYEVLSD +KRA
Sbjct:     7 DYYEVLGVHKNASDTEIKKAFRKLAIQYHPDKNPDDKEAEEKFKEITEAYEVLSDPQKRA 66

Query:   137 MYDQYGEAGVKST--VGGGSSAYTTN-PF-DLFETXXXXXXXXXXXXNQTGFRTRRRSTV 192
              YDQ+G AGV +    GGG   +    PF D+F                 G R RR    
Sbjct:    67 QYDQFGHAGVGAGGFSGGGFGGFGAGTPFGDIF----GDIFGDIFGGRPRGSRGRR---- 118

Query:   193 TKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVM 252
               G+DL+Y++ L F E+ FGAEKE ++ + + C  C G+GAK G++ ++C TC G GQV 
Sbjct:   119 --GDDLQYNMELSFEEAAFGAEKEIQVPYGKRCGDCGGSGAKPGTEPKVCPTCRGAGQV- 175

Query:   253 RTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILR 312
             R  Q   G FS    C  C GEG V+   C  C G G IR  K + VKVP GV TG+ L+
Sbjct:   176 RFQQ---GFFSVSKTCNHCNGEGRVVENPCTSCRGSGMIRDTKTLSVKVPAGVETGTRLK 232

Query:   313 VVXXXXXXXXXXXXXDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEG 372
             +              DLYV + V E P   R+  D+   I +S++ A +G  ++V T++G
Sbjct:   233 LSGEGGQGIKGGGNGDLYVAIAVREHPIFTREDNDVLCEIPVSFVQAALGCEIEVPTLDG 292

Query:   373 ISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRI 419
                +++P GTQ G +  L  KG P+L     RGD L  +KV  P+ +
Sbjct:   293 KVSMKIPEGTQSGRIFRLRGKGVPQLQGYG-RGDQLVIIKVETPSNL 338

GO:0009408 "response to heat" evidence=ISS

UNIPROTKB|P95830 dnaJ "Chaperone protein DnaJ" [Streptococcus pneumoniae TIGR4 (taxid:170187)]

 Score = 613 (220.8 bits), Expect = 8.1e-60, P = 8.1e-60
 Identities = 132/342 (38%), Positives = 179/342 (52%)

Query:    78 DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
             ++Y  LGV K+AS  EIK AYRKL+++YHPD+NKEPGA +K+KE+  AYE LSDD+KRA 
Sbjct:     5 EFYDRLGVSKNASADEIKKAYRKLSKKYHPDINKEPGAEDKYKEVQEAYETLSDDQKRAA 64

Query:   138 YDQYGEAGVKSTVGG--GSSAYT-TNPFDLFETXXXXXXXXXXXXNQTGFRTRRRSTVTK 194
             YDQYG AG     GG  G   +     F  FE                G  +R  +   +
Sbjct:    65 YDQYGAAGANGGFGGAGGFGGFNGAGGFGGFEDIFSSFFGG-------GGSSRNPNAPRQ 117

Query:   195 GEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRT 254
             G+DL+Y + L F E+IFG EKE +      C  C G+GAK G+    C  C G G +   
Sbjct:   118 GDDLQYRVNLTFEEAIFGTEKEVKYHREAGCRTCNGSGAKPGTSPVTCGRCHGAGVINVD 177

Query:   255 DQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVV 314
              QTP G+  +   C  C G G+ I   C  C G G  +   ++ VK+P GV TG  +R+ 
Sbjct:   178 TQTPLGMMRRQVTCDVCHGRGKEIKYPCTTCHGTGHEKQAHSVHVKIPAGVETGQQIRLA 237

Query:   315 XXXXXXXXXXXXXDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGIS 374
                          DLYV + VE     +R+G  +F  ++++++ A +G  V + TV G  
Sbjct:   238 GQGEAGFNGGPYGDLYVVVSVEASDKFEREGTTIFYNLNLNFVQAALGDTVDIPTVHGDV 297

Query:   375 ELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIP 416
             EL +P GTQ G    L  KGAP L   ++ GD   TV V  P
Sbjct:   298 ELVIPEGTQTGKKFRLRSKGAPSLRGGAV-GDQYVTVNVVTP 338

GO:0005515 "protein binding" evidence=IPI

TIGR_CMR|DET_1398 DET_1398 "co-chaperone protein DnaJ" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 601 (216.6 bits), Expect = 1.5e-58, P = 1.5e-58
 Identities = 125/342 (36%), Positives = 188/342 (54%)

Query:    78 DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
             DYY  LG+ +SAS ++IK A+RK+A ++HPD N E GA EKFKEI+ AYEVLS+ +KRA 
Sbjct:     6 DYYEVLGIERSASDEDIKKAFRKMAMKHHPDRNHEDGAAEKFKEINEAYEVLSNPEKRAA 65

Query:   138 YDQYGEAGVKSTVGGGSSAYTTNPFDLFETXXXXXXXXXXXXNQTGFRTRRRSTVTKGED 197
             YD++G          GS A+    F+ F+               T  ++ +R    +G D
Sbjct:    66 YDRFG-------FSAGSDAFGQGGFENFDFGGLGSIFETFFGGAT--QSAKRGP-RRGPD 115

Query:   198 LRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQT 257
             + YDI +   E+  G EKE     LE C  C+GTGAK G+ +  C+ C G GQV +  ++
Sbjct:   116 MSYDIRITLEEAATGVEKEITTERLEYCSECSGTGAKAGTSLVKCTNCNGTGQVYQVQKS 175

Query:   258 PFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVXXX 317
              FG F+ V+ CP C GEG +I E C KC G G+  +K+ ++VK+P GV+ G+ +R+    
Sbjct:   176 VFGRFTSVTPCPKCRGEGTIIGEPCAKCRGTGKEYVKRTVQVKIPAGVADGNQIRLNGYG 235

Query:   318 XXXXXXXXXXDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQ 377
                       D+Y+ + +      +RDG D+   + I++  A +GT V V  +    +L+
Sbjct:   236 GVGDKGASAGDVYINVSIASHADFKRDGDDVIYELEINFAQAALGTEVNVPGLSTSHKLK 295

Query:   378 VPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRI 419
             +P G+Q G   VL  KG P LN+    GD +  + V  P ++
Sbjct:   296 IPSGSQNGKYFVLKGKGIPHLNRFG-SGDEMVHLNVVTPEKL 336

GO:0009408 "response to heat" evidence=ISS

UNIPROTKB|P08622 dnaJ [Escherichia coli K-12 (taxid:83333)]

 Score = 568 (205.0 bits), Expect = 4.8e-55, P = 4.8e-55
 Identities = 130/344 (37%), Positives = 187/344 (54%)

Query:    75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDK 133
             A  DYY  LGV K+A  +EI+ AY++LA +YHPD N+ +  A  KFKEI  AYEVL+D +
Sbjct:     2 AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQ 61

Query:   134 KRAMYDQYGEAGVKST-VGGGSSAYTTNPFDLFETXXXXXXXXXXXXNQTGFRTRRRSTV 192
             KRA YDQYG A  +   +GGG      +  D+F                 G R R+R+  
Sbjct:    62 KRAAYDQYGHAAFEQGGMGGGGFGGGADFSDIFGDVFGDIFG--------GGRGRQRAA- 112

Query:   193 TKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVM 252
              +G DLRY++ L   E++ G  KE  +  LE C+VC G+GAK G++ + C TC G GQV 
Sbjct:   113 -RGADLRYNMELTLEEAVRGVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQV- 170

Query:   253 RTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILR 312
                Q   G F+    CP C G G +I + C KC G GR+   K + VK+P GV TG  +R
Sbjct:   171 ---QMRQGFFAVQQTCPHCQGRGTLIKDPCNKCHGHGRVERSKTLSVKIPAGVDTGDRIR 227

Query:   313 VVXXXXXXXXXXXXXDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEG 372
             +              DLYV + V++ P  +R+G +L+  + I++  A +G  ++V T++G
Sbjct:   228 LAGEGEAGEHGAPAGDLYVQVQVKQHPIFEREGNNLYCEVPINFAMAALGGEIEVPTLDG 287

Query:   373 ISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIP 416
               +L+VP  TQ G +  +  KG   + +   +GD L  V V  P
Sbjct:   288 RVKLKVPGETQTGKLFRMRGKGVKSV-RGGAQGDLLCRVVVETP 330

GO:0003756 "protein disulfide isomerase activity" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IDA;IMP

GO:0006457 "protein folding" evidence=IDA

GO:0042026 "protein refolding" evidence=IDA

GO:0051082 "unfolded protein binding" evidence=IEA;IDA

GO:0016020 "membrane" evidence=IDA

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0006260 "DNA replication" evidence=IEA;IMP

GO:0009408 "response to heat" evidence=IEA;IEP

GO:0046872 "metal ion binding" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0043335 "protein unfolding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B0JW23	DNAJ_MICAN	No assigned EC number	0.5321	0.7556	0.9010	yes	no
B1WVR2	DNAJ_CYAA5	No assigned EC number	0.5317	0.7556	0.8962	yes	no
Q2JH49	DNAJ_SYNJB	No assigned EC number	0.5111	0.7399	0.8375	yes	no
Q7VEJ6	DNAJ_PROMA	No assigned EC number	0.5116	0.7556	0.8915	yes	no
B7KEJ8	DNAJ_CYAP7	No assigned EC number	0.5581	0.7578	0.9013	yes	no
Q7NDG8	DNAJ_GLOVI	No assigned EC number	0.5218	0.7668	0.8929	yes	no
B7JY68	DNAJ_CYAP8	No assigned EC number	0.5275	0.7600	0.904	yes	no
B0CAZ0	DNAJ_ACAM1	No assigned EC number	0.5377	0.7511	0.8957	yes	no
Q2JW78	DNAJ_SYNJA	No assigned EC number	0.5251	0.7399	0.8375	yes	no
Q8DKR7	DNAJ_THEEB	No assigned EC number	0.5457	0.7443	0.8900	yes	no
Q7V9C8	DNAJ_PROMM	No assigned EC number	0.5058	0.7578	0.8941	yes	no
Q8YUA5	DNAJ_NOSS1	No assigned EC number	0.5160	0.7600	0.9015	yes	no
Q114R3	DNAJ_TRIEI	No assigned EC number	0.5233	0.7533	0.8983	yes	no
B8HLD2	DNAJ_CYAP4	No assigned EC number	0.5306	0.7533	0.8983	yes	no
B1XQF6	DNAJ_SYNP2	No assigned EC number	0.5304	0.7645	0.9021	yes	no
Q5N0G1	DNAJ_SYNP6	No assigned EC number	0.5056	0.7421	0.8803	yes	no
B2J3J3	DNAJ_NOSP7	No assigned EC number	0.5102	0.7578	0.9013	yes	no
Q3MG81	DNAJ_ANAVT	No assigned EC number	0.5160	0.7600	0.9015	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.44.94.1	hypothetical protein (426 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	fgenesh4_pg.C_LG_V000902	hypothetical protein (229 aa)	•		•						0.634
	estExt_Genewise1_v1.C_LG_II2716	hypothetical protein; Essential component of the PAM complex, a complex required for the transl [...] (274 aa)	•		•						0.608
	eugene3.00130661	hypothetical protein; Essential component of the PAM complex, a complex required for the transl [...] (342 aa)	•		•						0.532
	gw1.XIII.1526.1	annotation not avaliable (81 aa)			•						0.497
	eugene3.00860035	hypothetical protein (705 aa)			•						0.496
	estExt_fgenesh4_pg.C_1500058	hypothetical protein (706 aa)			•						0.496
	estExt_fgenesh4_pg.C_LG_I2723	hypothetical protein (283 aa)			•						0.495
	grail3.0261001401	hypothetical protein (124 aa)			•						0.494
	fgenesh4_pm.C_LG_III000644	hypothetical protein (651 aa)			•						0.494
	eugene3.02610008	hypothetical protein (132 aa)			•						0.494

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	446
PRK14293	374	PRK14293, PRK14293, chaperone protein DnaJ; Provis	1e-170
TIGR02349	354	TIGR02349, DnaJ_bact, chaperone protein DnaJ	1e-168
COG0484	371	COG0484, DnaJ, DnaJ-class molecular chaperone with	1e-141
PRK10767	371	PRK10767, PRK10767, chaperone protein DnaJ; Provis	1e-127
PRK14294	366	PRK14294, PRK14294, chaperone protein DnaJ; Provis	1e-114
PRK14280	376	PRK14280, PRK14280, chaperone protein DnaJ; Provis	1e-108
PRK14276	380	PRK14276, PRK14276, chaperone protein DnaJ; Provis	1e-108
PRK14277	386	PRK14277, PRK14277, chaperone protein DnaJ; Provis	1e-105
PRK14297	380	PRK14297, PRK14297, chaperone protein DnaJ; Provis	1e-104
PRK14283	378	PRK14283, PRK14283, chaperone protein DnaJ; Provis	1e-103
PRK14291	382	PRK14291, PRK14291, chaperone protein DnaJ; Provis	1e-101
PRK14298	377	PRK14298, PRK14298, chaperone protein DnaJ; Provis	1e-100
PRK14282	369	PRK14282, PRK14282, chaperone protein DnaJ; Provis	2e-98
PRK14278	378	PRK14278, PRK14278, chaperone protein DnaJ; Provis	6e-97
PRK14301	373	PRK14301, PRK14301, chaperone protein DnaJ; Provis	3e-96
PRK14281	397	PRK14281, PRK14281, chaperone protein DnaJ; Provis	2e-93
PRK14287	371	PRK14287, PRK14287, chaperone protein DnaJ; Provis	3e-91
PRK14284	391	PRK14284, PRK14284, chaperone protein DnaJ; Provis	3e-89
PRK14292	371	PRK14292, PRK14292, chaperone protein DnaJ; Provis	6e-89
PRK14289	386	PRK14289, PRK14289, chaperone protein DnaJ; Provis	3e-88
PRK14286	372	PRK14286, PRK14286, chaperone protein DnaJ; Provis	2e-87
PRK14295	389	PRK14295, PRK14295, chaperone protein DnaJ; Provis	1e-84
PRK14296	372	PRK14296, PRK14296, chaperone protein DnaJ; Provis	2e-79
PRK14300	372	PRK14300, PRK14300, chaperone protein DnaJ; Provis	6e-79
PRK14279	392	PRK14279, PRK14279, chaperone protein DnaJ; Provis	8e-78
PRK14290	365	PRK14290, PRK14290, chaperone protein DnaJ; Provis	8e-72
PRK14285	365	PRK14285, PRK14285, chaperone protein DnaJ; Provis	1e-62
PTZ00037	421	PTZ00037, PTZ00037, DnaJ_C chaperone protein; Prov	8e-53
cd10747	158	cd10747, DnaJ_C, C-terminal substrate binding doma	5e-50
PRK14299	291	PRK14299, PRK14299, chaperone protein DnaJ; Provis	5e-50
PRK14288	369	PRK14288, PRK14288, chaperone protein DnaJ; Provis	6e-49
PRK10266	306	PRK10266, PRK10266, curved DNA-binding protein Cbp	4e-39
pfam00226	63	pfam00226, DnaJ, DnaJ domain	4e-33
smart00271	60	smart00271, DnaJ, DnaJ molecular chaperone homolog	1e-26
cd10719	65	cd10719, DnaJ_zf, Zinc finger domain of DnaJ and H	2e-26
cd06257	55	cd06257, DnaJ, DnaJ domain or J-domain	4e-26
COG2214	237	COG2214, CbpA, DnaJ-class molecular chaperone [Pos	2e-24
TIGR03835	871	TIGR03835, termin_org_DnaJ, terminal organelle ass	1e-21
pfam00684	65	pfam00684, DnaJ_CXXCXGXG, DnaJ central domain	2e-20
pfam01556	81	pfam01556, DnaJ_C, DnaJ C terminal domain	6e-20
PRK09430	267	PRK09430, djlA, Dna-J like membrane chaperone prot	1e-11
cd10747	158	cd10747, DnaJ_C, C-terminal substrate binding doma	2e-11
PTZ00341	1136	PTZ00341, PTZ00341, Ring-infected erythrocyte surf	7e-11
COG5407	610	COG5407, SEC63, Preprotein translocase subunit Sec	2e-10
COG5269	379	COG5269, ZUO1, Ribosome-associated chaperone zuoti	6e-07
pfam01556	81	pfam01556, DnaJ_C, DnaJ C terminal domain	1e-05
COG1076	174	COG1076, DjlA, DnaJ-domain-containing proteins 1 [	1e-05
TIGR00714	155	TIGR00714, hscB, Fe-S protein assembly co-chaperon	2e-05
PHA03102	153	PHA03102, PHA03102, Small T antigen; Reviewed	2e-04
COG1076	174	COG1076, DjlA, DnaJ-domain-containing proteins 1 [	4e-04
cd10747	158	cd10747, DnaJ_C, C-terminal substrate binding doma	8e-04
PHA02624	647	PHA02624, PHA02624, large T antigen; Provisional	9e-04
COG1107	715	COG1107, COG1107, Archaea-specific RecJ-like exonu	0.004

>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional

 Score =  482 bits (1244), Expect = e-170
 Identities = 193/343 (56%), Positives = 233/343 (67%), Gaps = 5/343 (1%)

Query: 77  GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRA 136
            DYY  LGV + A   E+K AYR+LAR+YHPDVNKEPGA ++FKEI+ AYEVLSD + RA
Sbjct: 3   ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRA 62

Query: 137 MYDQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGE 196
            YDQ+GEAGV    G           D+FETFF     GF G    G R RRR    +G+
Sbjct: 63  RYDQFGEAGVSGAAGFPDMGDMGGFADIFETFFS----GFGGAGGQGGRRRRRGP-QRGD 117

Query: 197 DLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQ 256
           DLRYD+ L+F E+IFG EKE  + HLETCE C G+GAK G+    CSTCGG GQV R  +
Sbjct: 118 DLRYDLKLDFREAIFGGEKEIRIPHLETCETCRGSGAKPGTGPTTCSTCGGAGQVRRATR 177

Query: 257 TPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGE 316
           TPFG F+QVS CP+C G G+VI + C  C G+G  ++ K +K+ +P GV TG+ LRV GE
Sbjct: 178 TPFGSFTQVSECPTCNGTGQVIEDPCDACGGQGVKQVTKKLKINIPAGVDTGTRLRVSGE 237

Query: 317 GDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISEL 376
           GDAG RGGPPGDLYVYL V+  P  +RDGI++ S I ISYL AI+G  ++V TV+G  EL
Sbjct: 238 GDAGLRGGPPGDLYVYLFVKNDPEFRRDGINILSEIKISYLQAILGDTLEVDTVDGPVEL 297

Query: 377 QVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRI 419
            +P GTQP  VL L  KG P+L  P  RGDHL TVKV IP RI
Sbjct: 298 TIPAGTQPNTVLTLENKGVPRLGNPVARGDHLITVKVKIPTRI 340

Length = 374

>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ

 Score =  475 bits (1226), Expect = e-168
 Identities = 175/345 (50%), Positives = 217/345 (62%), Gaps = 9/345 (2%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
           DYY  LGV K AS +EIK AYRKLA++YHPD NK+  A EKFKEI+ AYEVLSD +KRA 
Sbjct: 1   DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQ 60

Query: 138 YDQYGEAGVKSTVGGGSSAY---TTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTK 194
           YDQ+G AG     GGG   +       F  F   FG   GG  G        RRRS   +
Sbjct: 61  YDQFGHAGFNGGGGGGGGGFNGFDIGFFGDFGDIFGDFFGGGGG-----SGRRRRSGPRR 115

Query: 195 GEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRT 254
           GEDLRYD+ L F E++FG EKE E+   E+CE C GTGAK G+  + C TCGG GQV R 
Sbjct: 116 GEDLRYDLELTFEEAVFGVEKEIEIPRKESCETCHGTGAKPGTDPKTCPTCGGTGQVRRQ 175

Query: 255 DQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVV 314
             TPFG F Q   CP+CGGEG++I E C  C G+GR++ +K I VK+P GV TG  LRV 
Sbjct: 176 QGTPFGFFQQQQTCPTCGGEGKIIKEPCSTCKGKGRVKERKTITVKIPAGVDTGQRLRVS 235

Query: 315 GEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGIS 374
           G+G+AG  GGP GDLYV + V+     +RDG DL+  + IS+  AI+G  ++V T++G  
Sbjct: 236 GKGNAGENGGPNGDLYVVIRVKPHKIFERDGNDLYIEVPISFTQAILGGEIEVPTLDGDV 295

Query: 375 ELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRI 419
           +L++P GTQ G V  L  KG P+L     RGD L TVKV  P  +
Sbjct: 296 KLKIPAGTQSGTVFRLKGKGVPRLRGNG-RGDLLVTVKVETPKNL 339

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family. Length = 354

>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

 Score =  407 bits (1048), Expect = e-141
 Identities = 158/345 (45%), Positives = 213/345 (61%), Gaps = 16/345 (4%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDKKRA 136
           DYY  LGV K AS +EIK AYRKLA++YHPD N  +  A EKFKEI+ AYEVLSD +KRA
Sbjct: 5   DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRA 64

Query: 137 MYDQYGEAGVKSTVGGGS--SAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTK 194
            YDQ+G AG K+   GG     +  +  D+FE FFG   GG       G   RR +   +
Sbjct: 65  AYDQFGHAGFKAGGFGGFGFGGFGGDFGDIFEDFFG---GG-------GGGRRRPNRPRR 114

Query: 195 GEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRT 254
           G DLRY++ +   E++FG +KE  ++   TC  C G+GAK G+  + C TC G GQV   
Sbjct: 115 GADLRYNLEITLEEAVFGVKKEIRVTRSVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTV 174

Query: 255 DQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVV 314
            +T F  FS    CP+C G G++I + C KC G+GR++ KK+I V +P GV  G  +R+ 
Sbjct: 175 QRTGF--FSFQQTCPTCNGTGKIIKDPCGKCKGKGRVKKKKSISVNIPAGVDDGDRIRLS 232

Query: 315 GEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGIS 374
           GEG+AGP GGP GDLYV++ V+  P  +RDG DL+  + IS+ +A +G  ++V T++G  
Sbjct: 233 GEGEAGPNGGPAGDLYVFVHVKPHPIFERDGDDLYCEVPISFTEAALGGEIEVPTLDGRV 292

Query: 375 ELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRI 419
           +L++P GTQ G+V  L  KG PKL     RGD    VKV  P  +
Sbjct: 293 KLKIPAGTQTGEVFRLRGKGMPKLRS-GGRGDLYVRVKVETPKNL 336

Length = 371

>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional

 Score =  372 bits (958), Expect = e-127
 Identities = 150/340 (44%), Positives = 198/340 (58%), Gaps = 14/340 (4%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDKKRA 136
           DYY  LGV ++AS  EIK AYRKLA +YHPD N  +  A EKFKEI  AYEVLSD +KRA
Sbjct: 5   DYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRA 64

Query: 137 MYDQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGE 196
            YDQYG A  +   GGG         D+F   FG   GG  G          R    +G 
Sbjct: 65  AYDQYGHAAFEQGGGGGGFGGGGGFGDIFGDIFGDIFGGGRG--------GGRQRARRGA 116

Query: 197 DLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQ 256
           DLRY++ +   E++ G  KE  +  L TC+ C G+GAK G+  + C TC G GQV R  Q
Sbjct: 117 DLRYNMEITLEEAVRGVTKEIRIPTLVTCDTCHGSGAKPGTSPKTCPTCHGAGQV-RMQQ 175

Query: 257 TPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGE 316
              G F+    CP+C G G++I + C+KC G+GR+  +K + VK+P GV TG  +R+ GE
Sbjct: 176 ---GFFTVQQTCPTCHGRGKIIKDPCKKCHGQGRVEKEKTLSVKIPAGVDTGDRIRLSGE 232

Query: 317 GDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISEL 376
           G+AG RGGP GDLYV + V+E P  +RDG DL+  + IS+  A +G  ++V T++G  +L
Sbjct: 233 GEAGERGGPAGDLYVQIHVKEHPIFERDGNDLYCEVPISFTTAALGGEIEVPTLDGRVKL 292

Query: 377 QVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIP 416
           ++P GTQ G +  L  KG   +     RGD    V V  P
Sbjct: 293 KIPEGTQTGKLFRLRGKGVKSVRS-GARGDLYCQVVVETP 331

Length = 371

>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional

 Score =  339 bits (871), Expect = e-114
 Identities = 166/348 (47%), Positives = 214/348 (61%), Gaps = 22/348 (6%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPG---ATEKFKEISAAYEVLSDDKK 134
           DYY  LGV + AS +EIK +YRKLA +YHPD N  PG   A E FKE + AYEVLSD KK
Sbjct: 5   DYYEILGVTRDASEEEIKKSYRKLAMKYHPDRN--PGDKEAEELFKEAAEAYEVLSDPKK 62

Query: 135 RAMYDQYGEAGVKSTVGGGSSAYTT--NPF-DLFETFFGPSMGGFPGMNQTGFRTRRRST 191
           R +YDQYG  G+  T   G S +    + F D+FE FFG   G          R R R+ 
Sbjct: 63  RGIYDQYGHEGLSGTGFSGFSGFDDIFSSFGDIFEDFFGFGGGR---------RGRSRTA 113

Query: 192 VTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQV 251
           V  G DLRYD+ L F E+ FG EKE  +  LETCE C G+G + G+    C  CGG GQV
Sbjct: 114 VRAGADLRYDLTLPFLEAAFGTEKEIRIQKLETCEECHGSGCEPGTSPTTCPQCGGSGQV 173

Query: 252 MRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSIL 311
            ++     G FS  + CP C G G+VI   C+ C G+GR+R+ K ++VK+P GV TGS L
Sbjct: 174 TQSQ----GFFSIRTTCPRCRGMGKVIVSPCKTCHGQGRVRVSKTVQVKIPAGVDTGSRL 229

Query: 312 RVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVE 371
           R+ GEG+AG RGGPPGDLYV+L VE     +RDG D+   + IS++ A +G  ++V T+E
Sbjct: 230 RLRGEGEAGVRGGPPGDLYVFLTVEPHEFFERDGNDVHCKVPISFVQAALGAQIEVPTLE 289

Query: 372 GISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRI 419
           G  EL++P GTQPGD+     KG P L +   RGD +  V+V +P R+
Sbjct: 290 GERELKIPKGTQPGDIFRFKGKGIPSL-RGGGRGDQIIEVEVKVPTRL 336

Length = 366

>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional

 Score =  324 bits (832), Expect = e-108
 Identities = 156/349 (44%), Positives = 202/349 (57%), Gaps = 21/349 (6%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
           DYY  LGV KSAS  EIK AYRKL+++YHPD+NKE GA EKFKEIS AYEVLSDD+KRA 
Sbjct: 5   DYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQ 64

Query: 138 YDQYGEAGVKSTVGGGSSAYTTNPF-------DLFETFFGPSMGGFPGMNQTGFRTRRRS 190
           YDQ+G AG     GGG   +    F       D+F +FFG            G R R  +
Sbjct: 65  YDQFGHAGPNQGFGGG--GFGGGDFGGGFGFEDIFSSFFG-----------GGGRRRDPN 111

Query: 191 TVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQ 250
              +G DL+Y + L F E++FG EKE E+   ETC+ C G+GAK G+    CS CGG GQ
Sbjct: 112 APRQGADLQYTMTLTFEEAVFGKEKEIEIPKEETCDTCHGSGAKPGTSKETCSHCGGSGQ 171

Query: 251 VMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSI 310
           V     TPFG       CP C G G+ I E C  C G+G++R +K I VK+P GV  G  
Sbjct: 172 VSVEQNTPFGRVVNRQTCPHCNGTGQEIKEKCPTCHGKGKVRKRKKINVKIPAGVDNGQQ 231

Query: 311 LRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTV 370
           +RV GEG+ G  GGP GDLYV   V      +RDG D++  + +++  A +G  ++V T+
Sbjct: 232 IRVSGEGEPGVNGGPAGDLYVVFRVRPHEFFERDGDDIYCEMPLTFAQAALGDEIEVPTL 291

Query: 371 EGISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRI 419
            G  +L++P GTQ G    L  KG P +     +GD    V+V  P ++
Sbjct: 292 HGKVKLKIPAGTQTGTQFRLKGKGVPNVRGYG-QGDQYVVVRVVTPTKL 339

Length = 376

>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional

 Score =  323 bits (830), Expect = e-108
 Identities = 150/346 (43%), Positives = 196/346 (56%), Gaps = 12/346 (3%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
           +YY  LGV K AS  EIK AYRKL+++YHPD+NKEPGA EK+KE+  AYE LSD +KRA 
Sbjct: 5   EYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAA 64

Query: 138 YDQYGEAGVKSTVGGGSSAY----TTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVT 193
           YDQYG AG     GGG+  +     +  F  FE  F    GG       G   R  +   
Sbjct: 65  YDQYGAAGANGGFGGGAGGFGGFDGSGGFGGFEDIFSSFFGG-------GGARRNPNAPR 117

Query: 194 KGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMR 253
           +G+DL+Y + L+F E+IFG EKE   +   TC  C G+GAK G+    C  C G G +  
Sbjct: 118 QGDDLQYRVNLDFEEAIFGKEKEVSYNREATCHTCNGSGAKPGTSPVTCGKCHGSGVITV 177

Query: 254 TDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRV 313
             QTP G+  +   C  C G G+ I E C+ C G G  +    + VK+P GV TG  +R+
Sbjct: 178 DTQTPLGMMRRQVTCDVCHGTGKEIKEPCQTCHGTGHEKQAHTVSVKIPAGVETGQQIRL 237

Query: 314 VGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGI 373
            G+G+AG  GGP GDLYV   VE     +RDG  ++ T+ IS++ A +G  V+V TV G 
Sbjct: 238 QGQGEAGFNGGPYGDLYVVFRVEPSKKFERDGSTIYYTLPISFVQAALGDTVEVPTVHGD 297

Query: 374 SELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRI 419
            EL++P GTQ G    L  KGAPKL      GD   TV +  P ++
Sbjct: 298 VELKIPAGTQTGKKFRLRGKGAPKLRGGGN-GDQHVTVNIVTPTKL 342

Length = 380

>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional

 Score =  316 bits (812), Expect = e-105
 Identities = 148/360 (41%), Positives = 207/360 (57%), Gaps = 32/360 (8%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPG---ATEKFKEISAAYEVLSDDKK 134
           DYY  LGV ++A+ +EIK AYR+LA++YHPD+N  PG   A +KFKEI+ AYE+LSD +K
Sbjct: 6   DYYEILGVDRNATEEEIKKAYRRLAKKYHPDLN--PGDKEAEQKFKEINEAYEILSDPQK 63

Query: 135 RAMYDQYGEA----GVKSTVGGGSSAYTTNPFD--------LFETFFGPSMGGFPGMNQT 182
           RA YDQ+G A    G     G G   +    FD        +FE  FG            
Sbjct: 64  RAQYDQFGHAAFDPGGFGQGGFGQGGFGGGGFDFDFGGFGDIFEDIFG-----------D 112

Query: 183 GFRTRRRSTVT---KGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKM 239
            F T RR   T   KG D+RYD+ L F E+ FG EKE E+   E C+VC G+GAK GSK 
Sbjct: 113 FFGTGRRRAETGPQKGADIRYDLELTFEEAAFGTEKEIEVERFEKCDVCKGSGAKPGSKP 172

Query: 240 RICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKV 299
             C  C G GQV     TPFG    +  C  C GEG++I++ C KC G GRIR ++ IKV
Sbjct: 173 VTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIITDPCNKCGGTGRIRRRRKIKV 232

Query: 300 KVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDA 359
            +P G+  G ++ + GEG+ G +GGP GDLY+ + V+  P  +R+G +++  + I++ DA
Sbjct: 233 NIPAGIDDGQMITLRGEGEPGIKGGPNGDLYIVIKVKPHPLFKREGYNVYLEMPITFTDA 292

Query: 360 IMGTVVKVKTVEGISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRI 419
            +G  +++ T++G  +  +P GTQ G    L  KG P L     RGD +  V + +P ++
Sbjct: 293 ALGGEIEIPTLDGKVKFTIPEGTQTGTKFRLRGKGIPHLRG-RGRGDQIVKVYIEVPKKL 351

Length = 386

>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional

 Score =  315 bits (808), Expect = e-104
 Identities = 158/350 (45%), Positives = 208/350 (59%), Gaps = 18/350 (5%)

Query: 75  ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDK 133
           AS DYY  LG+ K AS  EIK A+RKLA +YHPD NK    A EKFKEI+ AY+VLSD +
Sbjct: 2   ASKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQ 61

Query: 134 KRAMYDQYGEAGVKSTVGGGSSAYTTNPF-------DLFETFFGPSMGGFPGMNQTGFRT 186
           K+A YDQ+G A      G GS  +    F       D+F++FFG   GGF      G  +
Sbjct: 62  KKAQYDQFGTADFNGAGGFGSGGFGGFDFSDMGGFGDIFDSFFG---GGF------GSSS 112

Query: 187 RRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCG 246
           RRR+   +G D+ Y I L F E++FG EKE  ++  E CE C GTGAK G+  + C  CG
Sbjct: 113 RRRNGPQRGADIEYTINLTFEEAVFGVEKEISVTRNENCETCNGTGAKPGTSPKTCDKCG 172

Query: 247 GRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVS 306
           G GQ+     TP G F   + C  CGG G+VI + C KC G+G++R  + IKV VP GV 
Sbjct: 173 GTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIEDPCNKCHGKGKVRKNRKIKVNVPAGVD 232

Query: 307 TGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVK 366
           TG+++ + G+G+ G  GGP GDLY+ + V      +R G D++    IS+  A +GT +K
Sbjct: 233 TGNVIPLRGQGEHGKNGGPTGDLYINIRVAPHKTFKRKGFDIYIDKHISFAKAALGTEIK 292

Query: 367 VKTVEGISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIP 416
           V TV+G  + +VP GTQPG V  L  KG P++N    RG+   TV V IP
Sbjct: 293 VPTVDGEVKYEVPAGTQPGTVFRLKGKGVPRVNSTG-RGNQYVTVIVDIP 341

Length = 380

>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional

 Score =  311 bits (798), Expect = e-103
 Identities = 149/343 (43%), Positives = 203/343 (59%), Gaps = 7/343 (2%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
           DYY  LGV ++A  KEIK AYRKLAR+YHPDV++E GA EKFKEIS AY VLSDD+KR  
Sbjct: 6   DYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQR 65

Query: 138 YDQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGM-NQTGFRTRRRSTVTKGE 196
           YDQ+G AG+     G S     N  + FE  F     G   + +  GF    R    +G 
Sbjct: 66  YDQFGHAGMD----GFSQEDIFNNIN-FEDIFQGFGFGIGNIFDMFGFGGGSRHGPQRGA 120

Query: 197 DLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQ 256
           D+  ++ +   E+  G EK+ ++ H + C VC G+ A+ GS+++ C TCGG GQV +   
Sbjct: 121 DIYTEVEITLEEAASGVEKDIKVRHTKKCPVCNGSRAEPGSEVKTCPTCGGTGQVKQVRN 180

Query: 257 TPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGE 316
           T  G    V+ CP C GEG+++ + C  C G+G +R  K I VK+P GV TGS LRV GE
Sbjct: 181 TILGQMMNVTTCPDCQGEGKIVEKPCSNCHGKGVVRETKTISVKIPAGVETGSRLRVSGE 240

Query: 317 GDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISEL 376
           G+ G RGG PGDLYV + V+     +R+G +L+    IS++ A +G  V V T++G  EL
Sbjct: 241 GEMGDRGGEPGDLYVVIKVKPHKIFRREGANLYYEKPISFVQAALGDTVDVPTIDGPVEL 300

Query: 377 QVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRI 419
           ++P GTQ G    L   G P L   S +G+    VKV +P ++
Sbjct: 301 KIPAGTQSGTTFRLKGHGMPSLRW-SGKGNLYVKVKVVVPKKL 342

Length = 378

>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional

 Score =  307 bits (788), Expect = e-101
 Identities = 142/350 (40%), Positives = 203/350 (58%), Gaps = 19/350 (5%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
           DYY  LGV ++A+ +EIK AYR+LAR+YHPD NK P A EKFKEI+ AY+VLSD +KR +
Sbjct: 4   DYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKL 63

Query: 138 YDQYGEAGVKS--TVGGGSSAYTTNPF----DLFETF---FGPSMGGFPGMNQTGFRTRR 188
           YDQ+G A          G   ++        D+ E     FG     F     T  R + 
Sbjct: 64  YDQFGHAAFSGSGQQQQGQEGFSDFGGGNIEDILEDVFDIFGFG-DIFGRRRATRERRKT 122

Query: 189 RSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGR 248
                KGED+   + +   E+  G     E+     CE C GTG   GS  ++C TCGG 
Sbjct: 123 YQRPVKGEDIYQTVEISLEEAYTGTTVSLEVPRYVPCEACGGTGYDPGSGEKVCPTCGGS 182

Query: 249 GQVMRTDQTPFGLFSQVS-VCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVST 307
           G++ +      G F ++S  CP+CGGEG V+ E C KC+G G +  K+ IKV++PPGV  
Sbjct: 183 GEIYQR-----GGFFRISQTCPTCGGEG-VLREPCSKCNGRGLVIKKETIKVRIPPGVDN 236

Query: 308 GSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKV 367
           GS LRV G+G AG  GGPPGDLY+ + V+  P  +R G +L+  ++I+  +A++GT ++V
Sbjct: 237 GSKLRVPGKGHAGRFGGPPGDLYIIVKVKPHPLFERRGDNLYLDVNITVAEAVLGTELEV 296

Query: 368 KTVEGISE-LQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIP 416
             ++G  E +++PPGT+ GD + +  KG P+L K S  GD +  V + +P
Sbjct: 297 PLLDGKKEKVKIPPGTKEGDKIRVPGKGMPRL-KGSGYGDLVVRVHIDVP 345

Length = 382

>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional

 Score =  304 bits (781), Expect = e-100
 Identities = 150/346 (43%), Positives = 197/346 (56%), Gaps = 18/346 (5%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
           DYY  LG+ K AS ++IK AYRKLA +YHPD NKEP A EKFKEIS AY VLSD +KRA 
Sbjct: 6   DYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQ 65

Query: 138 YDQYGEAGVKSTVGGGSSAYTTNPF----DLFETFFGPSMGGFPGMNQTGFRTRRRSTVT 193
           YD++G AG+ +        +    F    D+FE FFG            G   R R    
Sbjct: 66  YDRFGHAGIDNQYSA-EDIFRGADFGGFGDIFEMFFG------------GGGRRGRMGPR 112

Query: 194 KGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMR 253
           +G DLRYD+ +   E+ FG  K+ ++   E C  C+GTGAK G+  + C TCGG GQV  
Sbjct: 113 RGSDLRYDLYITLEEAAFGVRKDIDVPRAERCSTCSGTGAKPGTSPKRCPTCGGTGQVTT 172

Query: 254 TDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRV 313
           T  TP G F   + C +C G G+VI   C  CSG G++R  + I V VP G  +G  L++
Sbjct: 173 TRSTPLGQFVTTTTCSTCHGRGQVIESPCPVCSGTGKVRKTRKITVNVPAGADSGLRLKL 232

Query: 314 VGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGI 373
            GEG+AG  G P GDLY+ L V+E    +R G D+ S I IS+  A +G  + V T+ G 
Sbjct: 233 SGEGEAGSPGAPSGDLYIVLHVKEHDYFERVGDDIISEIPISFTQAALGADIMVPTLYGK 292

Query: 374 SELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRI 419
            ++ +PPGTQ   V  L  KG P+L+    +GD L  V V  P ++
Sbjct: 293 VKMNIPPGTQTHSVFRLKDKGMPRLHG-HGKGDQLVKVIVKTPTKL 337

Length = 377

>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional

 Score =  299 bits (766), Expect = 2e-98
 Identities = 146/359 (40%), Positives = 199/359 (55%), Gaps = 25/359 (6%)

Query: 75  ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE--PGATEKFKEISAAYEVLSDD 132
              DYY  LGV ++A+ +EIK AY++L +++HPD + E    A +KFKEI  AYEVLSD 
Sbjct: 2   EKKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDP 61

Query: 133 KKRAMYDQYG---EAGVKSTVGGGSSAYT------TNPF--DLFETFFGPSMGGFPGMNQ 181
           +KRAMYD++G   E         G   +        N F  D+F+ FFG          +
Sbjct: 62  QKRAMYDRFGYVGEQPPYQETESGGGFFEDIFKDFENIFNRDIFDIFFG----------E 111

Query: 182 TGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRI 241
              +  +R    +GED+RY+I +  S+ I GAE   E    ETC  C GTG + GS    
Sbjct: 112 RRTQEEQREYARRGEDIRYEIEVTLSDLINGAEIPVEYDRYETCPHCGGTGVEPGSGYVT 171

Query: 242 CSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKV 301
           C  C G G++    ++ FG+F     C  CGG G++  EYC +C G GRIR +    VK+
Sbjct: 172 CPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPGEYCHECGGSGRIRRRVRTTVKI 231

Query: 302 PPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIM 361
           P GV  G++LR+ G G+AG  GGP GDLYV + V   P  +R G DL   ++I YL AI+
Sbjct: 232 PAGVEDGTVLRITGGGNAGYYGGPYGDLYVIVRVRPDPRFKRSGSDLIYDVTIDYLQAIL 291

Query: 362 GTVVKVKTVEG-ISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRI 419
           GT V+V   EG  + L++PPGTQP  V  L  KG P + +   RGD +  V V IP R+
Sbjct: 292 GTTVEVPLPEGGTTMLKIPPGTQPETVFRLKGKGLPNM-RYGRRGDLIVNVHVEIPKRL 349

Length = 369

>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional

 Score =  295 bits (757), Expect = 6e-97
 Identities = 145/346 (41%), Positives = 191/346 (55%), Gaps = 17/346 (4%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
           DYY  LGV ++AS  EIK AYRKLAR+ HPDVN +  A EKFKEIS AYEVLSD +KR +
Sbjct: 4   DYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRI 63

Query: 138 YDQYG---EAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTK 194
            D  G   E+      GGG         D+FE FFG            G R R    V  
Sbjct: 64  VDLGGDPLESAGGG--GGGFGGGFGGLGDVFEAFFGGGAA------SRGPRGR----VRP 111

Query: 195 GEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRT 254
           G D    + L+  E   G  K+  +     C+ C G G    SK   C TCGGRG+V   
Sbjct: 112 GSDSLLRMRLDLEECATGVTKQVTVDTAVLCDRCHGKGTAGDSKPVTCDTCGGRGEVQTV 171

Query: 255 DQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVV 314
            ++  G       CP+C G GEVI + C +C+G+GR+R ++ I VK+P GV  G  +R+ 
Sbjct: 172 QRSFLGQVMTSRPCPTCRGVGEVIPDPCHECAGDGRVRARREITVKIPAGVGDGMRIRLA 231

Query: 315 GEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTV-EGI 373
            +G+ GP GGP GDLYV +  +      RDG DL  T+S+  +DA +GT V V+ + +G 
Sbjct: 232 AQGEVGPGGGPAGDLYVEVHEQPHDVFVRDGDDLHCTVSVPMVDAALGTTVTVEAILDGP 291

Query: 374 SELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRI 419
           SE+ +PPGTQPG V+ L  +G P L +   RGD    V+V +P R+
Sbjct: 292 SEITIPPGTQPGSVITLRGRGMPHL-RSGGRGDLHAHVEVVVPTRL 336

Length = 378

>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional

 Score =  293 bits (752), Expect = 3e-96
 Identities = 149/347 (42%), Positives = 193/347 (55%), Gaps = 20/347 (5%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVN-KEPGATEKFKEISAAYEVLSDDKKRA 136
           DYY  LGV + AS  EIK AYRKLA QYHPD N   P A +KFKE + AYEVL D +KRA
Sbjct: 5   DYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRA 64

Query: 137 MYDQYGEAGVKSTVGGGSSAYTTNPF----DLFETFFGPSMGGFPGMNQTGFRTRRRSTV 192
            YD++G AGV    G G  +   + F    D+F   FG S GG          +RR    
Sbjct: 65  RYDRFGHAGVNGNGGFGGFSSAEDIFSHFSDIFGDLFGFSGGG----------SRRGPRP 114

Query: 193 TKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVM 252
             G DLRY++ + F ++  G E    +    TC+ C G+GA  G+    C  CGG GQV 
Sbjct: 115 QAGSDLRYNLTVSFRQAAKGDEVTLRIPKNVTCDDCGGSGAAPGTSPETCRHCGGSGQVR 174

Query: 253 RTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILR 312
           ++     G F     CP C GEG VI+  C KC G G ++  + +KV++P GV TGS LR
Sbjct: 175 QSQ----GFFQIAVPCPVCRGEGRVITHPCPKCKGSGIVQQTRELKVRIPAGVDTGSRLR 230

Query: 313 VVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEG 372
           + GEG+ G  GGPPGDLYV + VE+    QR G DL  T  IS++ A +G  ++V T++ 
Sbjct: 231 LRGEGEPGVHGGPPGDLYVVITVEDDKIFQRQGQDLVVTQEISFVQAALGDRIEVPTLDD 290

Query: 373 ISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRI 419
              L +P GTQ G+V  L  KG P L   S +GD L  V V  P ++
Sbjct: 291 PVTLDIPKGTQSGEVFRLRGKGLPYLGS-SQKGDLLVEVSVVTPTKL 336

Length = 373

>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional

 Score =  287 bits (736), Expect = 2e-93
 Identities = 149/359 (41%), Positives = 194/359 (54%), Gaps = 27/359 (7%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPG---ATEKFKEISAAYEVLSDDKK 134
           DYY  LGV +SA   EIK AYRKLA +YHPD  K P    A E FKE++ AYEVLS+D K
Sbjct: 4   DYYEVLGVSRSADKDEIKKAYRKLALKYHPD--KNPDNKEAEEHFKEVNEAYEVLSNDDK 61

Query: 135 RAMYDQYGEAGVKSTVG-GGSSAYTTNPFDL------FETFFGPSMGGFPGMNQTGF--- 184
           R  YDQ+G AGV S+   GG   Y     D       F   FG       G +  GF   
Sbjct: 62  RRRYDQFGHAGVGSSAASGGGPGYGGGGGDFNDIFSAFNDMFGGG-ARRGGGSPFGFEDV 120

Query: 185 -----RTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKM 239
                R RR S    G DL+  + L   E   G EK  ++     C+ C GTG+K G   
Sbjct: 121 FGGGGRRRRASAGIPGTDLKIRLKLTLEEIAKGVEKTLKIKKQVPCKECNGTGSKTG-AT 179

Query: 240 RICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKV 299
             C TC G G+V +  +T FG F  ++ CP+CGGEG V+ + C  C GEG  + +  +KV
Sbjct: 180 ETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVKDRCPACYGEGIKQGEVTVKV 239

Query: 300 KVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPG--IQRDGIDLFSTISISYL 357
            VP GV  G+ L + G+G+AGPRGG PGDL V   +EE P     R+G D+   +++SY 
Sbjct: 240 TVPAGVQDGNYLTLRGQGNAGPRGGAPGDLIVV--IEEKPHELFVRNGDDVIYNLAVSYP 297

Query: 358 DAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIP 416
           D ++GT V+V T++G  +L +P GTQP  +L +  KG   L     RGD    V V +P
Sbjct: 298 DLVLGTKVEVPTLDGAVKLTIPAGTQPETMLRIPGKGIGHLRGSG-RGDQYVRVNVFVP 355

Length = 397

>gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional

 Score =  280 bits (718), Expect = 3e-91
 Identities = 144/342 (42%), Positives = 198/342 (57%), Gaps = 12/342 (3%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
           DYY  LGV ++AS  E+K AYRKLAR+YHPDVNK P A +KFKE+  AY+ LSD +K+A 
Sbjct: 5   DYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAH 64

Query: 138 YDQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGED 197
           YDQ+G        GGG +       D+F+ FFG   G            R  +   +G D
Sbjct: 65  YDQFGHTDPNQGFGGGGAGDFGGFSDIFDMFFGGGGG-----------RRNPNAPRQGAD 113

Query: 198 LRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQT 257
           L+Y + LEF E++FG E E E+   ETC  C G+GAK G+K   CS CGG GQ+     T
Sbjct: 114 LQYTMTLEFKEAVFGKETEIEIPREETCGTCHGSGAKPGTKPETCSHCGGSGQLNVEQNT 173

Query: 258 PFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEG 317
           PFG      VC  C G G++I + C  C G+G++R +K I VKVP G+  G  LRV G+G
Sbjct: 174 PFGRVVNRRVCHHCEGTGKIIKQKCATCGGKGKVRKRKKINVKVPAGIDHGQQLRVSGQG 233

Query: 318 DAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQ 377
           +AG  GGPPGDLYV  +V+     +RDG D++  + +++    +G  ++V T+ G  +L+
Sbjct: 234 EAGVNGGPPGDLYVVFNVKPHEFFERDGDDIYCEMPLTFPQVALGDEIEVPTLNGKVKLK 293

Query: 378 VPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRI 419
           +P GTQ G    L  KG P ++    +GD    V+V  P  +
Sbjct: 294 IPAGTQTGTSFRLRGKGVPNVHGRG-QGDQHVQVRVVTPKNL 334

Length = 371

>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional

 Score =  276 bits (707), Expect = 3e-89
 Identities = 146/358 (40%), Positives = 200/358 (55%), Gaps = 23/358 (6%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPG---ATEKFKEISAAYEVLSDDKK 134
           DYY  LGV K+AS +EIK AYRKLA +YHPD  K PG   A ++FKE+S AYEVLSD +K
Sbjct: 2   DYYTILGVSKTASPEEIKKAYRKLAVKYHPD--KNPGDAEAEKRFKEVSEAYEVLSDAQK 59

Query: 135 RAMYDQYGEAGVKSTVGGGSSAYTTNPFDLFETF---FGPSMGG-------FPGMNQTGF 184
           R  YD+YG+ G  +  GG   A   N  D   TF   FG   GG         G     F
Sbjct: 60  RESYDRYGKDGPFAGAGGFGGAGMGNMEDALRTFMGAFGGEFGGGGSFFEGLFGGLGEAF 119

Query: 185 RTRRRS-TVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICS 243
             R       +G   +  I L F E+  G EKE  +S  ++C+ C+G+GA     +++C 
Sbjct: 120 GMRGGPAGARQGASKKVHITLSFEEAAKGVEKELLVSGYKSCDACSGSGANSSQGIKVCD 179

Query: 244 TCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPP 303
            C G GQV+++     G FS  S CP CGGEG VI++ C  C G+GRI+ K+++ V +P 
Sbjct: 180 RCKGSGQVVQSR----GFFSMASTCPECGGEGRVITDPCSVCRGQGRIKDKRSVHVHIPA 235

Query: 304 GVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGT 363
           GV +G  L++ G GDAG  G P GDLYV++DVE  P  +R G DL   + I ++DA +G 
Sbjct: 236 GVDSGMRLKMEGYGDAGQNGAPAGDLYVFIDVEPHPVFERRGDDLILELPIGFVDAALGM 295

Query: 364 VVKVKTV--EGISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRI 419
             ++ T+  EG   L +P G Q G +L +  +G P ++    RGD L  + V  P  +
Sbjct: 296 KKEIPTLLKEGTCRLTIPEGIQSGTILKVRGQGFPNVHGKG-RGDLLVRISVETPQNL 352

Length = 391

>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional

 Score =  274 bits (703), Expect = 6e-89
 Identities = 133/344 (38%), Positives = 189/344 (54%), Gaps = 14/344 (4%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
           DYY  LGV ++AS  EIK+AYRKLA +YHPD NKE GA EKF +I+ AY VLSD +KRA 
Sbjct: 3   DYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAH 62

Query: 138 YDQYGEAGVKSTVGGGS-SAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGE 196
           YD++G A      GG        +P D+FE  FG       G    G R RR     +G+
Sbjct: 63  YDRFGTAPGAGMPGGDPFGGMGFDPMDIFEQLFG-------GAGFGGGRGRRGP--ARGD 113

Query: 197 DLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMR-ICSTCGGRGQVMRTD 255
           DL  +  +   ++  G E E E+  L  CE C G+  + G K    C TC G G V    
Sbjct: 114 DLETEARITLEQARAGEEVEVEVDRLTECEHCHGSRTEPGGKPPKTCPTCRGAGAVRAQA 173

Query: 256 QTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVG 315
           +T FG+      CP+C GEG++I++ C  C G GR    + +KVK+P G+  G  +RV G
Sbjct: 174 RTIFGVVETQQPCPTCRGEGQIITDPCTVCRGRGRTLKAETVKVKLPRGIDEGYRIRVAG 233

Query: 316 EGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISE 375
            G+ GP G   GDLYV++++E  P ++R+   L     I +  A +G  + V T++G   
Sbjct: 234 MGNEGPGGN--GDLYVHIEMEPHPELRREQEHLIYEARIGFAKAALGGQITVPTLDGPQV 291

Query: 376 LQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRI 419
           ++V PGTQ GD+  L  +G P+L      GD +   ++ +P ++
Sbjct: 292 IEVKPGTQHGDLHRLRGQGMPRLQGAGT-GDLIVEYEIAVPKQL 334

Length = 371

>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional

 Score =  273 bits (700), Expect = 3e-88
 Identities = 150/350 (42%), Positives = 197/350 (56%), Gaps = 13/350 (3%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPG---ATEKFKEISAAYEVLSDDKK 134
           DYY  LGV K+A+  EIK AYRK A QYHPD  K PG   A EKFKE + AY+VLSD  K
Sbjct: 6   DYYEVLGVSKTATVDEIKKAYRKKAIQYHPD--KNPGDKEAEEKFKEAAEAYDVLSDPDK 63

Query: 135 RAMYDQYGEAGVKSTVGGGS-SAYTTNPFDLFETF---FGPSMGGFPGMNQ-TGFRTRRR 189
           R+ YDQ+G AGV    GGG  S    +  D+F  F   FG   GGF G     G  +++R
Sbjct: 64  RSRYDQFGHAGVGGAAGGGGFSGEGMSMEDIFSMFGDIFGGHGGGFGGFGGFGGGGSQQR 123

Query: 190 STVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRG 249
             V +G DLR  + L   E   G EK+F++     C  C GTGA+  +    C TC G G
Sbjct: 124 --VFRGSDLRVKVKLNLKEISTGVEKKFKVKKYVPCSHCHGTGAEGNNGSETCPTCKGSG 181

Query: 250 QVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGS 309
            V R   T  G     S CP+C GEG++I + C+KC GEG +  ++ I VK+P GV+ G 
Sbjct: 182 SVTRVQNTILGTMQTQSTCPTCNGEGKIIKKKCKKCGGEGIVYGEEVITVKIPAGVAEGM 241

Query: 310 ILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKT 369
            L + G+G+AG  GG  GDL V ++ E  P + RD  DL   + +S   A +G  V+V T
Sbjct: 242 QLSMNGKGNAGKHGGVNGDLLVVIEEEPHPELIRDENDLIYNLLLSVPTAALGGAVEVPT 301

Query: 370 VEGISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRI 419
           ++G +++++  GTQPG VL L  KG P +N     GD L  V V IP  +
Sbjct: 302 IDGKAKVKIEAGTQPGKVLRLRNKGLPSVNGYG-TGDLLVNVSVYIPETL 350

Length = 386

>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional

 Score =  270 bits (692), Expect = 2e-87
 Identities = 154/350 (44%), Positives = 207/350 (59%), Gaps = 21/350 (6%)

Query: 79  YYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDKKRAM 137
           YY  LGV KSA+ +EIK+AYRKLA +YHPD NK    + EKFKE + AYE+L D KKR  
Sbjct: 6   YYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQA 65

Query: 138 YDQYGEAGVKSTVGG-GSSAYT--TNPF----DLFETFFGPSMGGFPGMNQTGFRTRRRS 190
           YDQ+G+AGV +  GG G  AYT  ++ F    D+F  FFG   GG       G    RRS
Sbjct: 66  YDQFGKAGVNAGAGGFGQGAYTDFSDIFGDFGDIFGDFFGGGRGG-------GSGGGRRS 118

Query: 191 TVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQ 250
              +G DLRY++ +   ++  G E + E+  LE+C  C G+GA  GS    C  CGG GQ
Sbjct: 119 GPQRGSDLRYNLEVSLEDAALGREYKIEIPRLESCVDCNGSGASKGSSPTTCPDCGGSGQ 178

Query: 251 VMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSI 310
           + RT     G FS  + CP+C G+G VIS  C+ C G+G    ++ I +K+PPGV TGS 
Sbjct: 179 IRRTQ----GFFSVATTCPTCRGKGTVISNPCKTCGGQGLQEKRRTINIKIPPGVETGSR 234

Query: 311 LRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTV 370
           L+V GEG+AGP GGP GDLYV   +++    +R G DL     IS   AI+G  ++V T+
Sbjct: 235 LKVSGEGEAGPNGGPHGDLYVVTHIKKHELFERQGNDLILVRKISLAQAILGAEIEVPTI 294

Query: 371 EG-ISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRI 419
           +G  +++++P GT+ G V  L   G P L     +GD    VK+ IP +I
Sbjct: 295 DGKKAKMKIPEGTESGQVFRLKGHGMPYLGAYG-KGDQHVIVKIEIPKKI 343

Length = 372

>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional

 Score =  264 bits (676), Expect = 1e-84
 Identities = 148/357 (41%), Positives = 200/357 (56%), Gaps = 23/357 (6%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDKKRA 136
           DYY  LGVPK A+  EIK AYRKLAR+YHPD NK +  A E+FKEIS AY+VLSD+KKR 
Sbjct: 10  DYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRK 69

Query: 137 MYDQ----YGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGF-------- 184
            YD+    +G  G +   GGG        FDL + F G + GG       G         
Sbjct: 70  EYDEARSLFGNGGFRPGPGGGGGG--GFNFDLGDLFGGGAQGGGGAGGGGGLGDVFGGLF 127

Query: 185 -RTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICS 243
            R  RR+   +G D+  ++ L F+E+I GA     L+    C  C+GTGAK G+  R+C 
Sbjct: 128 NRGGRRTQPRRGADVESEVTLSFTEAIDGATVPLRLTSQAPCPACSGTGAKNGTTPRVCP 187

Query: 244 TCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPP 303
           TC G GQV R      G FS    CP C G G +  + C  C G GR +  + ++V++P 
Sbjct: 188 TCSGTGQVSRN----SGGFSLSEPCPDCKGRGLIADDPCLVCKGSGRAKSSRTMQVRIPA 243

Query: 304 GVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGT 363
           GVS G  +R+ G+G  G RGGP GDLYV + V+  P   R G +L  T+ +++ +A +G 
Sbjct: 244 GVSDGQRIRLRGKGAPGERGGPAGDLYVVVHVDPHPVFGRSGDNLTVTVPVTFPEAALGA 303

Query: 364 VVKVKTVEGIS-ELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRI 419
            V+V T+ G    +++PPGT  G VL +  KGA +  K   RGD L TV+V +P  +
Sbjct: 304 EVRVPTLGGPPVTVKLPPGTPNGRVLRVRGKGAVR--KDGTRGDLLVTVEVAVPKDL 358

Length = 389

>gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional

 Score =  250 bits (640), Expect = 2e-79
 Identities = 127/359 (35%), Positives = 188/359 (52%), Gaps = 27/359 (7%)

Query: 75  ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKK 134
              DYY  LGV K+AS +EI+ AYRKLA+QYHPD+NK P A +K  EI+ A +VL D  K
Sbjct: 2   KKKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDK 61

Query: 135 RAMYDQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQT---------GFR 185
           R  YDQ+G A        GSS +++N F  FE  F  +MG     + T            
Sbjct: 62  RKQYDQFGHAAFD-----GSSGFSSN-FGDFEDLFS-NMGSSGFSSFTNIFSDFFGSNKS 114

Query: 186 TRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTC 245
             +RST  KG+ +  DI L F E +FG +K  EL  L  C  C G+GA+  S + IC+ C
Sbjct: 115 DYQRST--KGQSVSLDIYLTFKELLFGVDKIIELDLLTNCSKCFGSGAESNSDIHICNNC 172

Query: 246 GGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGV 305
            G G+V+      F  F Q + C  C G G++I   C+ C G+G+   +K I+V +P G+
Sbjct: 173 HGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIKNKCKNCKGKGKYLERKKIEVNIPKGI 232

Query: 306 STGSILRVVGEGDAGPRGGPPGDLYVYL-----DVEEIPGIQRDGIDLFSTISISYLDAI 360
                +++  +G A    G  GDL + +      V EI     +  D+  T +ISYLDAI
Sbjct: 233 RPNQQIKLSQKGHASLNNGVNGDLIIDIYLKESKVFEII----NNNDILMTYNISYLDAI 288

Query: 361 MGTVVKVKTVEGISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRI 419
           +G  + +KT++G  + ++P      +++++  KG  K      RGD +  V + +P  +
Sbjct: 289 LGNEIIIKTLDGDIKYKLPKSINSNELIIINNKGLYKSINKDKRGDLIIKVNIVVPKNL 347

Length = 372

>gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional

 Score =  249 bits (636), Expect = 6e-79
 Identities = 133/349 (38%), Positives = 193/349 (55%), Gaps = 17/349 (4%)

Query: 76  SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKR 135
           S DYY  LGV K+AS  ++K AY KLA+QYHPD      A +KFKEI+AAY+VL D++KR
Sbjct: 2   SQDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKR 61

Query: 136 AMYDQYGEAGVKSTV----GGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRST 191
           A YD++G    ++      GG    +  +  D+F  FF   MGG         R+R  S+
Sbjct: 62  AAYDRFGHDAFQNQQSRGGGGNHGGFHPDINDIFGDFFSDFMGG-------SRRSRPTSS 114

Query: 192 VTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQV 251
             +G DL+Y++ +   E+  G EK    S    C+ C G+G++ G  +  C  C G G  
Sbjct: 115 KVRGSDLKYNLTINLEEAFHGIEKNISFSSEVKCDTCHGSGSEKGETVTTCDACSGVG-A 173

Query: 252 MRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSIL 311
            R  Q   G F+    C  C G G++I   C+KC G GR   ++N+ V +P GV  G+ +
Sbjct: 174 TRMQQ---GFFTIEQACHKCQGNGQIIKNPCKKCHGMGRYHKQRNLSVNIPAGVENGTRI 230

Query: 312 RVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVE 371
           R  GEG+AG RGG  GDLYV + ++     + DG +L   + IS+++A +G  ++V  +E
Sbjct: 231 RHTGEGEAGIRGGNSGDLYVDIAIKPHDIYKVDGANLHCKLPISFVNAALGGEIEVPVIE 290

Query: 372 GIS-ELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRI 419
           G    L +P GTQ GD L L  KG  K+ + +IRGD L  + V +P  +
Sbjct: 291 GGKVNLTIPAGTQNGDQLRLRSKGMSKM-RSTIRGDMLTHIHVEVPKNL 338

Length = 372

>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional

 Score =  246 bits (631), Expect = 8e-78
 Identities = 131/358 (36%), Positives = 185/358 (51%), Gaps = 25/358 (6%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDKKRA 136
           D+Y  LGV   AS +EIK AYRKLAR+ HPD N  +P A E+FK +S A++VLSD  KR 
Sbjct: 10  DFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRK 69

Query: 137 MYDQY-----------GEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGG-------FPG 178
            YD+                     GG  +      F+L + F     GG       F G
Sbjct: 70  EYDETRRLFAGGGFGGRRFDGGGGFGGFGTGGDGAEFNLNDLFDAAGRGGGGGIGDLFGG 129

Query: 179 MNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSK 238
           +   G  + R S   +G DL  +  L+F E+  G      L+    C  C G+GA+ G+ 
Sbjct: 130 LFNRGGGSARPSRPRRGNDLETETTLDFVEAAKGVTMPLRLTSPAPCTTCHGSGARPGTS 189

Query: 239 MRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIK 298
            ++C TC G G + R +Q  FG FS+   C  C G G +I + C +C G G     + I 
Sbjct: 190 PKVCPTCNGSGVISR-NQGAFG-FSEP--CTDCRGTGSIIEDPCEECKGTGVTTRTRTIN 245

Query: 299 VKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLD 358
           V++PPGV  G  +R+ G+G+AG RG P GDLYV + V       RDG DL  T+ +S+ +
Sbjct: 246 VRIPPGVEDGQRIRLAGQGEAGLRGAPSGDLYVTVHVRPDKVFGRDGDDLTVTVPVSFTE 305

Query: 359 AIMGTVVKVKTVEGISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIP 416
             +G+ + V T++G   ++VP GT  G +L +  +G PK  +    GD L TVKV +P
Sbjct: 306 LALGSTLSVPTLDGPVGVKVPAGTADGRILRVRGRGVPK--RSGGAGDLLVTVKVAVP 361

Length = 392

>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional

 Score =  230 bits (588), Expect = 8e-72
 Identities = 135/353 (38%), Positives = 187/353 (52%), Gaps = 25/353 (7%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE--PGATEKFKEISAAYEVLSDDKKR 135
           DYY  LGV ++AS ++IK A+R+LA+++HPD++      A EKFKEIS AYEVLSD +KR
Sbjct: 4   DYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKR 63

Query: 136 AMYDQYGEAGVKSTVGGGSSAYTTNPF-------DLFETFFGPSMGGFPGMNQTGFRTRR 188
             YDQ G        G G S +  + F       D+F   FG   G F     +GF   +
Sbjct: 64  RQYDQTG----TVDFGAGGSNFNWDNFTHFSDINDIFNQIFG---GNFGSDFFSGF-GNQ 115

Query: 189 RSTVTKGEDL--RYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCG 246
           +ST     D+    DI LE  ++ +G EK  +      C  C+GTGAK G K+  C TC 
Sbjct: 116 QSTRNIDLDIYTNLDISLE--DAYYGTEKRIKYRRNAMCPDCSGTGAKNG-KLITCPTCH 172

Query: 247 GRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVS 306
           G GQ        F     V+ C +CGG G +  E C +C+G G + + ++I VK+P G +
Sbjct: 173 GTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIPEEKCPRCNGTGTVVVNEDISVKIPKGAT 232

Query: 307 TGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVK 366
               LRV G+G +   GG  GDLYV L V   P IQR   DL+    I++  A +G  ++
Sbjct: 233 DNLRLRVKGKGQS--YGGRTGDLYVVLRVNNDPNIQRINDDLYVDQKINFPQAALGGEIE 290

Query: 367 VKTVEGISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRI 419
           +K       L++P GTQPG+VL +   G P LN     GD L  + V +P R+
Sbjct: 291 IKLFREKYNLKIPEGTQPGEVLKIKGAGMPHLNGHG-SGDLLVRINVEVPKRL 342

Length = 365

>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional

 Score =  206 bits (525), Expect = 1e-62
 Identities = 115/347 (33%), Positives = 189/347 (54%), Gaps = 16/347 (4%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEK-FKEISAAYEVLSDDKKRA 136
           DYY  LG+ K AS  EIK AYRK+A +YHPD NK     E  FKE + AYEVL DD KRA
Sbjct: 4   DYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRA 63

Query: 137 MYDQYGEAGVKSTVGGGSSAYTT--NPF-DLFETFFGPSMGGFPGMNQTGFRTRRRSTVT 193
            YD++G    +   GGG   ++   + F D+FE F G     F   N+   + R+     
Sbjct: 64  QYDRFGHTAFEG--GGGFEGFSGGFSGFSDIFEDF-GDIFDSFFTGNRGQDKNRKHE--- 117

Query: 194 KGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMR 253
           KG+DL Y I +   ++  G +    ++    CE C G  ++ G+   IC+ C G G+VM+
Sbjct: 118 KGQDLTYQIEISLEDAYLGYKNNINITRNMLCESCLGKKSEKGTSPSICNMCNGSGRVMQ 177

Query: 254 TDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRV 313
                 G F   + CP C G G++IS  C+ C G+G ++ K+ I++K+P G+     +++
Sbjct: 178 GG----GFFRVTTTCPKCYGNGKIISNPCKSCKGKGSLKKKETIELKIPAGIDDNQQIKM 233

Query: 314 VGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGI 373
            G+G   P     GDLY+ + ++     +R+G DL++T+ IS+  A +G  +K++T+   
Sbjct: 234 RGKGSVNPDNQQYGDLYIKILIKPHKIFKRNGKDLYATLPISFTQAALGKEIKIQTIASK 293

Query: 374 S-ELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRI 419
             ++++P GT+  + +++  +G P L+     G+ +  +K+  P  +
Sbjct: 294 KIKIKIPKGTENDEQIIIKNEGMPILHTEKF-GNLILIIKIKTPKNL 339

Length = 365

>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional

 Score =  182 bits (463), Expect = 8e-53
 Identities = 113/343 (32%), Positives = 171/343 (49%), Gaps = 30/343 (8%)

Query: 79  YYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMY 138
            Y  L + K  +  EIK AYRKLA ++HPD   +P   EKFKEIS AYEVLSD +KR +Y
Sbjct: 30  LYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGDP---EKFKEISRAYEVLSDPEKRKIY 86

Query: 139 DQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDL 198
           D+YGE G++   GG   A   +  DLF+  FG   GG           R+     +GED+
Sbjct: 87  DEYGEEGLE---GGEQPA---DASDLFDLIFG---GG-----------RKPGGKKRGEDI 126

Query: 199 RYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTP 258
              + +   +   GA ++  ++    C  C G G    + +  C  C G+G  ++  Q  
Sbjct: 127 VSHLKVTLEQIYNGAMRKLAINKDVICANCEGHGGPKDAFVD-CKLCNGQGIRVQIRQMG 185

Query: 259 FGLFSQVSVCPSCGGEGEVISE--YCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGE 316
             +    S C SC G+G++I E   C+ CSG+G  + +K ++V +  GV     +   GE
Sbjct: 186 SMIHQTQSTCNSCNGQGKIIPESKKCKNCSGKGVKKTRKILEVNIDKGVPNQHKITFHGE 245

Query: 317 GDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEG-ISE 375
            D  P    PG++   L+ +     +R+G DLF T  IS  +A+ G V  +  ++G    
Sbjct: 246 ADEKP-NEIPGNVVFILNEKPHDTFKREGGDLFITKKISLYEALTGFVFYITHLDGRKLL 304

Query: 376 LQVPPG--TQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIP 416
           +  PPG   +PGD+ V+  +G P    P  +G+   T +V  P
Sbjct: 305 VNTPPGEVVKPGDIKVINNEGMPTYKSPFKKGNLYVTFEVIFP 347

Length = 421

>gnl|CDD|199909 cd10747, DnaJ_C, C-terminal substrate binding domain of DnaJ and HSP40

 Score =  166 bits (424), Expect = 5e-50
 Identities = 64/130 (49%), Positives = 85/130 (65%), Gaps = 1/130 (0%)

Query: 290 RIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLF 349
           R+R KK + VK+P GV  G  LR+ GEGDAGP GGPPGDLYV + V+  P  +RDG DL+
Sbjct: 30  RVREKKTLTVKIPAGVDDGQRLRLRGEGDAGPNGGPPGDLYVVIRVKPHPVFRRDGNDLY 89

Query: 350 STISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLF 409
             + IS  +A++G  ++V T+ G  +L++PPGTQPG VL L  KG P+L     RGD   
Sbjct: 90  CEVPISLTEALLGGEIEVPTLGGKVKLKIPPGTQPGTVLRLKGKGMPRLR-GGGRGDLYV 148

Query: 410 TVKVTIPNRI 419
            VKV  P ++
Sbjct: 149 EVKVEFPKKL 158

The C-terminal region of the DnaJ/Hsp40 protein mediates oligomerization and binding to denatured polypeptide substrate. DnaJ/Hsp40 is a widely conserved heat-shock protein. It prevents the aggregation of unfolded substrate and forms a ternary complex with both substrate and DnaK/Hsp70; the N-terminal J-domain of DnaJ/Hsp40 stimulates the ATPase activity of DnaK/Hsp70. Length = 158

>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional

 Score =  171 bits (434), Expect = 5e-50
 Identities = 119/347 (34%), Positives = 161/347 (46%), Gaps = 80/347 (23%)

Query: 75  ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKK 134
           A  DYYA LGVPK+AS  EIK A++KLAR+YHPDVNK PGA EKFKEI+ AY VLSD +K
Sbjct: 2   AYKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEK 61

Query: 135 RAMYDQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTK 194
           R +YD YG           S+ +   P         P  G F G N   F          
Sbjct: 62  RRIYDTYGTTA-------ASAGWQGPPPG------PPGGGDFSGFNVGDFS--------- 99

Query: 195 GEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRT 254
                     +F + +FG    F            G G   GS         GR      
Sbjct: 100 ----------DFFQQLFGGRGGF-----------GGFGDLFGSV--------GRRARKGR 130

Query: 255 D---QTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSIL 311
           D   + P  L          GGE +V+     + S            V++PPGV  G ++
Sbjct: 131 DLEAELPLTLEEAYR-----GGE-KVVEVAGERLS------------VRIPPGVREGQVI 172

Query: 312 RVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVE 371
           R+ G+G  G      GDLY+ + +   P  + +G DL++T+ +    A++G  V+V T++
Sbjct: 173 RLAGKGRQG------GDLYLVVRLLPHPVFRLEGDDLYATVDVPAPIAVVGGKVRVMTLD 226

Query: 372 GISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNR 418
           G  E+ +PP TQ G  L L  KG P+   P+ RGD    V++TIP R
Sbjct: 227 GPVEVTIPPRTQAGRKLRLKGKGWPR--GPAGRGDQYAEVRITIPTR 271

Length = 291

>gnl|CDD|172776 PRK14288, PRK14288, chaperone protein DnaJ; Provisional

 Score =  170 bits (432), Expect = 6e-49
 Identities = 112/344 (32%), Positives = 175/344 (50%), Gaps = 20/344 (5%)

Query: 79  YYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDKKRAM 137
           YY  L V K ++ + IK +YRKLA +YHPD N  +  A EKFK I+ AY VLSD+KKRA+
Sbjct: 5   YYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRAL 64

Query: 138 YDQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGED 197
           YD+YG+ G+     G S +  ++ F+   +FF  + G        G R  +R   +   D
Sbjct: 65  YDRYGKKGLNQ--AGASQSDFSDFFEDLGSFFEDAFG-------FGARGSKRQKSSIAPD 115

Query: 198 LRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQV-MRTDQ 256
               I L F E++FG +K  ++ +   CE C GTGAK    +  C  C G+GQV MR   
Sbjct: 116 YLQTIELSFKEAVFGCKKTIKVQYQSVCESCDGTGAK-DKALETCKQCNGQGQVFMRQ-- 172

Query: 257 TPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGE 316
              G  S    C +C G+G++I   C+ C G+  I   + I   +P G+   + + +  +
Sbjct: 173 ---GFMSFAQTCGACQGKGKIIKTPCQACKGKTYILKDEEIDAIIPEGIDDQNRMVLKNK 229

Query: 317 GDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGIS-E 375
           G+   + G  GDLY+   V+E    +R+G DLF    + +    +G  +KV +++G   E
Sbjct: 230 GNEYEK-GKRGDLYLEARVKEDEHFKREGCDLFIEAPVFFTTIALGHTIKVPSLKGDELE 288

Query: 376 LQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRI 419
           L++P   +         +G  K  + S RG  +  ++V  P  +
Sbjct: 289 LKIPRNARDRQTFAFRNEGV-KHPESSYRGSLIVELQVIYPKSL 331

Length = 369

>gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional

 Score =  142 bits (360), Expect = 4e-39
 Identities = 97/345 (28%), Positives = 150/345 (43%), Gaps = 79/345 (22%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
           DYYA +GV  +   K IK AYR+LAR+YHPDV+KEP A  +FKE++ A+EVLSD+++RA 
Sbjct: 5   DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 64

Query: 138 YDQYGEAGVKSTVG-----GGSSAYTTNPF-DLFETFFGPSMGGFPGMNQTGFRTRRRST 191
           YDQ  +             G   ++    F D+F + FG          Q   ++R+R  
Sbjct: 65  YDQLWQHRNDPQFNRQFQHGDGQSFNAEDFDDIFSSIFG----------QHARQSRQRPA 114

Query: 192 VTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQV 251
             +G D+  ++ +   E++   E +  +S+     V    G                   
Sbjct: 115 -ARGHDIEIEVAVFLEETL--TEHKRTISY--NLPVYNAFG------------------- 150

Query: 252 MRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSIL 311
           M   + P  L  ++   P+  G G+             RIRLK                 
Sbjct: 151 MIEQEIPKTLNVKI---PAGVGNGQ-------------RIRLK----------------- 177

Query: 312 RVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVE 371
              G+G  G  GGP GDL++ + +   P     G DL   + ++  +A +G  V V T++
Sbjct: 178 ---GQGTPGENGGPNGDLWLVIHIAPHPLFDIVGQDLEIVVPLAPWEAALGAKVTVPTLK 234

Query: 372 GISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIP 416
               L +PPG+Q G  L +  KG   L      GD    +K+ +P
Sbjct: 235 ESILLTIPPGSQAGQRLRVKGKG---LVSKKQTGDLYAVLKIVMP 276

Length = 306

>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain

 Score =  118 bits (299), Expect = 4e-33
 Identities = 42/63 (66%), Positives = 48/63 (76%), Gaps = 1/63 (1%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGA-TEKFKEISAAYEVLSDDKKRA 136
           DYY  LGVP+ AS +EIK AYRKLA +YHPD N    A  EKFKEI+ AYEVLSD +KRA
Sbjct: 1   DYYEILGVPRDASDEEIKKAYRKLALKYHPDKNPGDPAAEEKFKEINEAYEVLSDPEKRA 60

Query: 137 MYD 139
           +YD
Sbjct: 61  IYD 63

DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature. Length = 63

>gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain

 Score =  101 bits (253), Expect = 1e-26
 Identities = 38/59 (64%), Positives = 43/59 (72%), Gaps = 2/59 (3%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK--EPGATEKFKEISAAYEVLSDDKK 134
           DYY  LGVP+ AS  EIK AYRKLA +YHPD N   +  A EKFKEI+ AYEVLSD +K
Sbjct: 2   DYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK 60

Length = 60

>gnl|CDD|199908 cd10719, DnaJ_zf, Zinc finger domain of DnaJ and HSP40

 Score =  100 bits (252), Expect = 2e-26
 Identities = 32/65 (49%), Positives = 42/65 (64%)

Query: 225 CEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRK 284
           C  C G+GAK G+K + C TCGG GQV +   T FG F   + CP+CGG G++I + C K
Sbjct: 1   CPTCNGSGAKPGTKPKTCPTCGGSGQVRQVQGTGFGFFQTQTTCPTCGGTGKIIKDPCPK 60

Query: 285 CSGEG 289
           C G+G
Sbjct: 61  CKGKG 65

Central/middle or CxxCxGxG-motif containing domain of DnaJ/Hsp40 (heat shock protein 40). DnaJ proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonin family. Hsp40 proteins are characterized by the presence of an N-terminal J domain, which mediates the interaction with Hsp70. This central domain contains four repeats of a CxxCxGxG motif and binds to two Zinc ions. It has been implicated in substrate binding. Length = 65

>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain

 Score = 99.5 bits (249), Expect = 4e-26
 Identities = 38/55 (69%), Positives = 42/55 (76%), Gaps = 1/55 (1%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSD 131
           DYY  LGVP  AS +EIK AYRKLA +YHPD N  +P A EKFKEI+ AYEVLSD
Sbjct: 1   DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification. Length = 55

>gnl|CDD|225124 COG2214, CbpA, DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

 Score =  101 bits (251), Expect = 2e-24
 Identities = 66/274 (24%), Positives = 89/274 (32%), Gaps = 54/274 (19%)

Query: 74  CASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPG--ATEKFKEISAAYEVLSD 131
               DYY  LGVP +AS +EIK AYRKLA +YHPD N      A EKFKEI+ AYE+LSD
Sbjct: 3   SDLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSD 62

Query: 132 DKKRAMYDQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRST 191
            ++RA YD+ G            SA    P +      G                R +  
Sbjct: 63  PERRAEYDKIGADNYFPGKSYRESAAF--PIEGSLQLTGLYE-----------EWRGKRN 109

Query: 192 VTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQV 251
            T+ +    D++      +  A   F                + GS  R           
Sbjct: 110 KTERKASLADLLSRGLSGLAAALSLFA----------DEAALRSGSLRRRDLA------- 152

Query: 252 MRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSIL 311
                  F                                 L K +K  +  G   G  L
Sbjct: 153 -ANLADNFEEALAGVK-------------------KAVARLLGKALKSTIKAGALEGKAL 192

Query: 312 RVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDG 345
           R+ G   +    G  G   +    +  P    +G
Sbjct: 193 RLKGLLKSAR--GALGKARLKELSKRHPPFALEG 224

Length = 237

>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein TopJ

 Score = 97.6 bits (242), Expect = 1e-21
 Identities = 43/92 (46%), Positives = 56/92 (60%), Gaps = 6/92 (6%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
           DYY  LG+ + A  +EIK A+RKLA++YHPD NK P A   F EI+ A +VLS+ KKRA 
Sbjct: 3   DYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRAN 62

Query: 138 YDQYGEAGVKSTVGGGSSAYTTNPFDLFETFF 169
           YD+YG  GV          +     D+F +FF
Sbjct: 63  YDKYGHDGVD-----REDDFDFQA-DVFNSFF 88

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility [Cellular processes, Chemotaxis and motility]. Length = 871

>gnl|CDD|216058 pfam00684, DnaJ_CXXCXGXG, DnaJ central domain

 Score = 84.4 bits (209), Expect = 2e-20
 Identities = 30/65 (46%), Positives = 40/65 (61%)

Query: 225 CEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRK 284
           C  C GTGAK G K + C  C G GQV++  +TP G+F     CP CGG G++I + C+ 
Sbjct: 1   CPHCHGTGAKPGKKPKTCPQCNGSGQVVKRQRTPGGVFQMQQTCPKCGGTGKIIKDPCKV 60

Query: 285 CSGEG 289
           C G+G
Sbjct: 61  CKGKG 65

The central cysteine-rich (CR) domain of DnaJ proteins contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DNAJ cysteine rich domain and various hydrophobic peptides has been found. Length = 65

>gnl|CDD|216569 pfam01556, DnaJ_C, DnaJ C terminal domain

 Score = 83.4 bits (207), Expect = 6e-20
 Identities = 29/74 (39%), Positives = 47/74 (63%), Gaps = 1/74 (1%)

Query: 347 DLFSTISISYLDAIMGTVVKVKTVEGIS-ELQVPPGTQPGDVLVLAKKGAPKLNKPSIRG 405
           DL+ T+ IS  +A++G  V+V T++G   ++++P GTQPGD L +  KG P     + RG
Sbjct: 1   DLYVTLPISLKEALLGGTVEVPTLDGRKVKIKIPAGTQPGDKLRIKGKGMPINKGGNGRG 60

Query: 406 DHLFTVKVTIPNRI 419
           D + T+ V IP ++
Sbjct: 61  DLIVTLNVKIPKKL 74

This family consists of the C terminal region form the DnaJ protein. Although the function of this region is unknown, it is always found associated with pfam00226 and pfam00684. DnaJ is a chaperone associated with the Hsp70 heat-shock system involved in protein folding and renaturation after stress. Length = 81

>gnl|CDD|236512 PRK09430, djlA, Dna-J like membrane chaperone protein; Provisional

 Score = 64.4 bits (158), Expect = 1e-11
 Identities = 30/70 (42%), Positives = 39/70 (55%), Gaps = 14/70 (20%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPD--VNKEPG--------ATEKFKEISAAYE 127
           D Y  LGV +S   +EIK AYRKL  ++HPD  V K  G        A EK +EI AAYE
Sbjct: 201 DAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAK--GLPPEMMEMAKEKAQEIQAAYE 258

Query: 128 VLSDDKKRAM 137
           ++   K++  
Sbjct: 259 LIK--KQKGF 266

Length = 267

>gnl|CDD|199909 cd10747, DnaJ_C, C-terminal substrate binding domain of DnaJ and HSP40

 Score = 62.1 bits (152), Expect = 2e-11
 Identities = 50/173 (28%), Positives = 68/173 (39%), Gaps = 47/173 (27%)

Query: 196 EDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGT-------GAKMGSKMRICSTCGGR 248
            DLRYD+ L   E+ FG EKE ++    T      T       G   G ++R+     G 
Sbjct: 1   ADLRYDLELTLEEAYFGKEKEIKIPRKVTRVREKKTLTVKIPAGVDDGQRLRL----RGE 56

Query: 249 GQVMRTDQTPFGLFSQVSVCPS----------------------CGGEGEVISEYCRKCS 286
           G        P  L+  + V P                        GGE EV +       
Sbjct: 57  GDAGPNGGPPGDLYVVIRVKPHPVFRRDGNDLYCEVPISLTEALLGGEIEVPT------- 109

Query: 287 GEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIP 339
                 L   +K+K+PPG   G++LR+ G+G    RGG  GDLYV + V E P
Sbjct: 110 ------LGGKVKLKIPPGTQPGTVLRLKGKGMPRLRGGGRGDLYVEVKV-EFP 155

The C-terminal region of the DnaJ/Hsp40 protein mediates oligomerization and binding to denatured polypeptide substrate. DnaJ/Hsp40 is a widely conserved heat-shock protein. It prevents the aggregation of unfolded substrate and forms a ternary complex with both substrate and DnaK/Hsp70; the N-terminal J-domain of DnaJ/Hsp40 stimulates the ATPase activity of DnaK/Hsp70. Length = 158

>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen; Provisional

 Score = 64.0 bits (155), Expect = 7e-11
 Identities = 28/69 (40%), Positives = 40/69 (57%)

Query: 79  YYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMY 138
           +Y  LGV  +A  KEI   Y KLA  Y+P          KFK+I+ AY++L D  K+ MY
Sbjct: 575 FYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMY 634

Query: 139 DQYGEAGVK 147
           +++G  G+K
Sbjct: 635 NKFGYDGIK 643

Length = 1136

>gnl|CDD|227694 COG5407, SEC63, Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

 Score = 62.3 bits (151), Expect = 2e-10
 Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 10/84 (11%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGAT--------EKFKEISAAYEVL 129
           D Y  LG+ +  S ++IK  YR L+ ++HPD  K P           EK+K I+ AY +L
Sbjct: 99  DPYEILGIDQDTSERDIKKRYRMLSMKFHPD--KAPPMVNELRSEYEEKYKTITKAYGLL 156

Query: 130 SDDKKRAMYDQYGEAGVKSTVGGG 153
           +D K+R  Y  YG          G
Sbjct: 157 TDKKRRENYLNYGTPDSPQHTSEG 180

Length = 610

>gnl|CDD|227594 COG5269, ZUO1, Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

 Score = 50.8 bits (121), Expect = 6e-07
 Identities = 28/68 (41%), Positives = 33/68 (48%), Gaps = 6/68 (8%)

Query: 78  DYYATLGVPK---SASGKEIKAAYRKLARQYHPDVNKEPGAT---EKFKEISAAYEVLSD 131
           D YA LG+ K    A   +I  A++K   +YHPD     G     E FK I  A EVL D
Sbjct: 44  DLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGD 103

Query: 132 DKKRAMYD 139
            K R  YD
Sbjct: 104 RKLRLQYD 111

Length = 379

>gnl|CDD|216569 pfam01556, DnaJ_C, DnaJ C terminal domain

 Score = 42.9 bits (102), Expect = 1e-05
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 2/46 (4%)

Query: 295 KNIKVKVPPGVSTGSILRVVGEG-DAGPRGGPPGDLYVYLDVEEIP 339
           + +K+K+P G   G  LR+ G+G      G   GDL V L+V +IP
Sbjct: 27  RKVKIKIPAGTQPGDKLRIKGKGMPINKGGNGRGDLIVTLNV-KIP 71

This family consists of the C terminal region form the DnaJ protein. Although the function of this region is unknown, it is always found associated with pfam00226 and pfam00684. DnaJ is a chaperone associated with the Hsp70 heat-shock system involved in protein folding and renaturation after stress. Length = 81

>gnl|CDD|224002 COG1076, DjlA, DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 8/69 (11%)

Query: 78  DYYATLGVPKSAS--GKEIKAAYRKLARQYHPDVNKEPG------ATEKFKEISAAYEVL 129
           D +   G+P++       +K  YR+L R YHPD   +        A ++  E++ AY+ L
Sbjct: 2   DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTL 61

Query: 130 SDDKKRAMY 138
            D   RA Y
Sbjct: 62  KDPLLRAEY 70

Length = 174

>gnl|CDD|211601 TIGR00714, hscB, Fe-S protein assembly co-chaperone HscB

 Score = 44.1 bits (104), Expect = 2e-05
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 4/51 (7%)

Query: 92  KEIKAAYRKLARQYHPDVNK----EPGATEKFKEISAAYEVLSDDKKRAMY 138
             ++  YR+L  QYHPD +     +  A+++   ++ AY  L D  +RA Y
Sbjct: 6   SRLRKRYRQLQAQYHPDASGMAQEQLAASQQSTTLNQAYHTLKDPLRRAEY 56

This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock [Protein fate, Protein folding and stabilization]. Length = 155

>gnl|CDD|222986 PHA03102, PHA03102, Small T antigen; Reviewed

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 5/63 (7%)

Query: 83  LGVPKSASGKE--IKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQ 140
           LG+P+SA G    ++ AY +   ++HPD   + G  EK KE++  Y+   +  K      
Sbjct: 11  LGLPRSAWGNLPLMRKAYLRKCLEFHPD---KGGDEEKMKELNTLYKKFRESVKSLRDLD 67

Query: 141 YGE 143
             E
Sbjct: 68  GEE 70

Length = 153

>gnl|CDD|224002 COG1076, DjlA, DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 23/61 (37%), Positives = 26/61 (42%), Gaps = 14/61 (22%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPD-----------VNKEPGATEKFKEISAAY 126
           D    LGV   A    IK AYRKL  + HPD           + K     EK +EI  AY
Sbjct: 114 DALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEK---LKEKLQEIQEAY 170

Query: 127 E 127
           E
Sbjct: 171 E 171

Length = 174

>gnl|CDD|199909 cd10747, DnaJ_C, C-terminal substrate binding domain of DnaJ and HSP40

 Score = 39.7 bits (94), Expect = 8e-04
 Identities = 18/75 (24%), Positives = 27/75 (36%), Gaps = 9/75 (12%)

Query: 347 DLFSTISISYLDAIMGTVVKVK------TVEGISELQV--PPGTQPGDVLVLAKKGAPKL 398
           DL   + ++  +A  G   ++K       V     L V  P G   G  L L  +G    
Sbjct: 2   DLRYDLELTLEEAYFGKEKEIKIPRKVTRVREKKTLTVKIPAGVDDGQRLRLRGEGDAGP 61

Query: 399 NKPSIRGDHLFTVKV 413
           N     GD    ++V
Sbjct: 62  NG-GPPGDLYVVIRV 75

The C-terminal region of the DnaJ/Hsp40 protein mediates oligomerization and binding to denatured polypeptide substrate. DnaJ/Hsp40 is a widely conserved heat-shock protein. It prevents the aggregation of unfolded substrate and forms a ternary complex with both substrate and DnaK/Hsp70; the N-terminal J-domain of DnaJ/Hsp40 stimulates the ATPase activity of DnaK/Hsp70. Length = 158

>gnl|CDD|222912 PHA02624, PHA02624, large T antigen; Provisional

 Score = 41.1 bits (97), Expect = 9e-04
 Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 5/57 (8%)

Query: 83  LGVPKSASGKE--IKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
           LG+P +A G    ++ AY +  ++YHPD   + G  EK K +++ Y+ L +  K A 
Sbjct: 17  LGLPMAAWGNLPLMRKAYLRKCKEYHPD---KGGDEEKMKRLNSLYKKLQEGVKSAR 70

Length = 647

>gnl|CDD|224032 COG1107, COG1107, Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]

 Score = 39.3 bits (92), Expect = 0.004
 Identities = 17/75 (22%), Positives = 22/75 (29%), Gaps = 17/75 (22%)

Query: 218 ELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGE-GE 276
             S    C  C G G         C  CGG G+V+               C  CG     
Sbjct: 49  FASFEIPCPKCRGKGTVTV--YDTCPECGGTGKVLT--------------CDICGDIIVP 92

Query: 277 VISEYCRKCSGEGRI 291
                C +C  + +I
Sbjct: 93  WEEGLCPECRRKPKI 107

Length = 715

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	446
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	100.0
PRK14296	372	chaperone protein DnaJ; Provisional	100.0
PRK14288	369	chaperone protein DnaJ; Provisional	100.0
PRK14276	380	chaperone protein DnaJ; Provisional	100.0
PRK14280	376	chaperone protein DnaJ; Provisional	100.0
PRK14298	377	chaperone protein DnaJ; Provisional	100.0
PRK14287	371	chaperone protein DnaJ; Provisional	100.0
PRK14277	386	chaperone protein DnaJ; Provisional	100.0
PRK14286	372	chaperone protein DnaJ; Provisional	100.0
PRK14278	378	chaperone protein DnaJ; Provisional	100.0
PRK14297	380	chaperone protein DnaJ; Provisional	100.0
PTZ00037	421	DnaJ_C chaperone protein; Provisional	100.0
PRK14279	392	chaperone protein DnaJ; Provisional	100.0
PRK14281	397	chaperone protein DnaJ; Provisional	100.0
PRK14282	369	chaperone protein DnaJ; Provisional	100.0
PRK14285	365	chaperone protein DnaJ; Provisional	100.0
PRK14301	373	chaperone protein DnaJ; Provisional	100.0
PRK14295	389	chaperone protein DnaJ; Provisional	100.0
PRK14294	366	chaperone protein DnaJ; Provisional	100.0
PRK14284	391	chaperone protein DnaJ; Provisional	100.0
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	100.0
PRK14300	372	chaperone protein DnaJ; Provisional	100.0
PRK10767	371	chaperone protein DnaJ; Provisional	100.0
PRK14283	378	chaperone protein DnaJ; Provisional	100.0
PRK14291	382	chaperone protein DnaJ; Provisional	100.0
PRK14293	374	chaperone protein DnaJ; Provisional	100.0
PRK14289	386	chaperone protein DnaJ; Provisional	100.0
PRK14292	371	chaperone protein DnaJ; Provisional	100.0
PRK14290	365	chaperone protein DnaJ; Provisional	100.0
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	100.0
PRK14299	291	chaperone protein DnaJ; Provisional	100.0
PRK10266	306	curved DNA-binding protein CbpA; Provisional	100.0
KOG0713	336	consensus Molecular chaperone (DnaJ superfamily) [	100.0
TIGR03835	871	termin_org_DnaJ terminal organelle assembly protei	100.0
KOG0715	288	consensus Molecular chaperone (DnaJ superfamily) [	100.0
KOG0714	306	consensus Molecular chaperone (DnaJ superfamily) [	99.87
PF01556	81	CTDII: DnaJ C terminal domain; InterPro: IPR002939	99.85
KOG0716	279	consensus Molecular chaperone (DnaJ superfamily) [	99.77
COG2214	237	CbpA DnaJ-class molecular chaperone [Posttranslati	99.73
KOG0718	546	consensus Molecular chaperone (DnaJ superfamily) [	99.73
PTZ00341	1136	Ring-infected erythrocyte surface antigen; Provisi	99.71
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	99.7
PF00226	64	DnaJ: DnaJ domain; InterPro: IPR001623 The prokary	99.69
KOG0691	296	consensus Molecular chaperone (DnaJ superfamily) [	99.68
KOG0717	508	consensus Molecular chaperone (DnaJ superfamily) [	99.66
KOG0719	264	consensus Molecular chaperone (DnaJ superfamily) [	99.62
PHA03102	153	Small T antigen; Reviewed	99.61
PRK10767	371	chaperone protein DnaJ; Provisional	99.61
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.59
KOG0721	230	consensus Molecular chaperone (DnaJ superfamily) [	99.58
PRK14290	365	chaperone protein DnaJ; Provisional	99.58
smart00271	60	DnaJ DnaJ molecular chaperone homology domain.	99.58
cd06257	55	DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat sho	99.56
PRK14284	391	chaperone protein DnaJ; Provisional	99.54
PRK14282	369	chaperone protein DnaJ; Provisional	99.51
PRK14298	377	chaperone protein DnaJ; Provisional	99.47
PRK14285	365	chaperone protein DnaJ; Provisional	99.47
PRK14294	366	chaperone protein DnaJ; Provisional	99.46
PF00684	66	DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR0	99.44
PRK14300	372	chaperone protein DnaJ; Provisional	99.44
PRK14301	373	chaperone protein DnaJ; Provisional	99.43
PRK14288	369	chaperone protein DnaJ; Provisional	99.42
PRK14278	378	chaperone protein DnaJ; Provisional	99.41
PRK14286	372	chaperone protein DnaJ; Provisional	99.41
PRK14287	371	chaperone protein DnaJ; Provisional	99.41
KOG0722	329	consensus Molecular chaperone (DnaJ superfamily) [	99.4
PRK14279	392	chaperone protein DnaJ; Provisional	99.4
PRK14276	380	chaperone protein DnaJ; Provisional	99.4
PRK14281	397	chaperone protein DnaJ; Provisional	99.39
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	99.39
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.38
PRK14280	376	chaperone protein DnaJ; Provisional	99.37
PRK14293	374	chaperone protein DnaJ; Provisional	99.36
PRK05014	171	hscB co-chaperone HscB; Provisional	99.36
PRK01356	166	hscB co-chaperone HscB; Provisional	99.36
PRK14277	386	chaperone protein DnaJ; Provisional	99.36
PRK14297	380	chaperone protein DnaJ; Provisional	99.36
PRK14295	389	chaperone protein DnaJ; Provisional	99.35
PRK14296	372	chaperone protein DnaJ; Provisional	99.35
PRK14289	386	chaperone protein DnaJ; Provisional	99.34
KOG0720	490	consensus Molecular chaperone (DnaJ superfamily) [	99.34
PTZ00037	421	DnaJ_C chaperone protein; Provisional	99.32
PRK14292	371	chaperone protein DnaJ; Provisional	99.32
PRK14283	378	chaperone protein DnaJ; Provisional	99.32
PTZ00100	116	DnaJ chaperone protein; Provisional	99.32
PRK00294	173	hscB co-chaperone HscB; Provisional	99.31
PRK14291	382	chaperone protein DnaJ; Provisional	99.29
PRK03578	176	hscB co-chaperone HscB; Provisional	99.29
PRK09430	267	djlA Dna-J like membrane chaperone protein; Provis	99.17
PHA02624	647	large T antigen; Provisional	99.14
COG5407	610	SEC63 Preprotein translocase subunit Sec63 [Intrac	99.08
PRK14299	291	chaperone protein DnaJ; Provisional	98.96
PF01556	81	CTDII: DnaJ C terminal domain; InterPro: IPR002939	98.92
PRK01773	173	hscB co-chaperone HscB; Provisional	98.88
TIGR00714	157	hscB Fe-S protein assembly co-chaperone HscB. This	98.84
COG5269	379	ZUO1 Ribosome-associated chaperone zuotin [Transla	98.74
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	98.71
KOG1150	250	consensus Predicted molecular chaperone (DnaJ supe	98.71
PRK10266	306	curved DNA-binding protein CbpA; Provisional	98.65
PLN03165	111	chaperone protein dnaJ-related; Provisional	98.65
KOG0723	112	consensus Molecular chaperone (DnaJ superfamily) [	98.37
KOG0568	342	consensus Molecular chaperone (DnaJ superfamily) [	98.31
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.23
TIGR02642	186	phage_xxxx uncharacterized phage protein. This unc	98.06
PF00684	66	DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR0	97.86
TIGR03835	871	termin_org_DnaJ terminal organelle assembly protei	97.76
COG1107	715	Archaea-specific RecJ-like exonuclease, contains D	97.65
PLN03165	111	chaperone protein dnaJ-related; Provisional	96.83
KOG3192	168	consensus Mitochondrial J-type chaperone [Posttran	96.72
COG1107	715	Archaea-specific RecJ-like exonuclease, contains D	96.51
TIGR02642	186	phage_xxxx uncharacterized phage protein. This unc	96.44
KOG2813	406	consensus Predicted molecular chaperone, contains	96.41
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	95.81
KOG2813	406	consensus Predicted molecular chaperone, contains	95.43
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	94.75
KOG0431	453	consensus Auxilin-like protein and related protein	94.64
PF03656	127	Pam16: Pam16; InterPro: IPR005341 The Pam16 protei	94.58
KOG0715	288	consensus Molecular chaperone (DnaJ superfamily) [	93.4
KOG2824	281	consensus Glutaredoxin-related protein [Posttransl	88.31
PF13446	62	RPT: A repeated domain in UCH-protein	84.96
PF11833	194	DUF3353: Protein of unknown function (DUF3353); In	82.83
cd03031	147	GRX_GRX_like Glutaredoxin (GRX) family, GRX-like d	81.62
COG5552	88	Uncharacterized conserved protein [Function unknow	80.62
KOG2824	281	consensus Glutaredoxin-related protein [Posttransl	80.01

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.4e-93  Score=706.79  Aligned_cols=347  Identities=46%  Similarity=0.821  Sum_probs=317.5

Q ss_pred             ccCcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHhhcchhhhhhhhhhccccceeeccCC
Q 013277           74 CASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGG  152 (446)
Q Consensus        74 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~-~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~~~~~~  152 (446)
                      ++.+|||+||||+++||++|||+|||+||++||||+|+ +++|+++|++|+|||||||||+||++||+||+++++++..+
T Consensus         1 ~~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~~gg~g   80 (371)
T COG0484           1 MAKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFKAGGFG   80 (371)
T ss_pred             CCccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccccCCcC
Confidence            46789999999999999999999999999999999999 78999999999999999999999999999999998733222


Q ss_pred             C--CCCCcCCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeEeeeeecccccccceeeeeccceeecccccC
Q 013277          153 G--SSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTG  230 (446)
Q Consensus       153 ~--~~~~~~~~~d~F~~fFg~~~g~~~~~~~~~~~~~~~~~~~~g~di~~~l~ltlee~~~G~~k~~~~~~~~~C~~C~G  230 (446)
                      +  .++|..++.|+|++||+++.+          +++++.++.++.|++++|+|||+|||+|+++++.+++.+.|+.|+|
T Consensus        81 g~g~~~fgg~~~DIF~~~FgGg~~----------~~~~~~~~~rG~Dl~~~l~isleEa~~G~~~~i~~~~~~~C~~C~G  150 (371)
T COG0484          81 GFGFGGFGGDFGDIFEDFFGGGGG----------GRRRPNRPRRGADLRYNLEITLEEAVFGVKKEIRVTRSVTCSTCHG  150 (371)
T ss_pred             CCCcCCCCCCHHHHHHHhhcCCCc----------ccCCCCCcccCCceEEEEEeEhhhhccCceeeEecceeeECCcCCC
Confidence            2  222333678899999962211          1122334678999999999999999999999999999999999999


Q ss_pred             CccccCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeecCCceEEEEeeEEEEEeCCCCCCCCE
Q 013277          231 TGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSI  310 (446)
Q Consensus       231 ~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~  310 (446)
                      +|++.+....+|++|+|+|++...+++  |+|+++++|+.|+|+|++++++|.+|+|.|++.+.++|+|+||+|+.+|++
T Consensus       151 sGak~gt~~~tC~tC~G~G~v~~~~~~--g~~~~~~~C~~C~G~G~~i~~pC~~C~G~G~v~~~~~i~V~IPaGv~~g~~  228 (371)
T COG0484         151 SGAKPGTDPKTCPTCNGSGQVRTVQRT--GFFSFQQTCPTCNGTGKIIKDPCGKCKGKGRVKKKKSISVNIPAGVDDGDR  228 (371)
T ss_pred             CCCCCCCCCCcCCCCCCcCeEEEEEee--eEEEEEEECCCCccceeECCCCCCCCCCCCeEeeeeEEEEECCCCCccCCE
Confidence            999999999999999999999887766  889999999999999999999999999999999999999999999999999


Q ss_pred             EEEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEEEEeecHHHHhCCCEEEEeccCCeEEEEeCCCCCCCcEEEE
Q 013277          311 LRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVL  390 (446)
Q Consensus       311 i~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~~ldG~~~l~i~~~~~~g~~~~l  390 (446)
                      |++.|+|+++.+|+++|||||.|.|++|+.|+|+|+||+++++|++.+|+||++++|+||||.++|+||+++|+|++++|
T Consensus       229 ir~~g~G~~g~~Ggp~GDLyv~i~v~~h~~F~R~g~dL~~~~~Is~~~AalG~~i~vptl~g~~~l~ip~Gtq~G~~~rl  308 (371)
T COG0484         229 IRLSGEGEAGPNGGPAGDLYVFVHVKPHPIFERDGDDLYCEVPISFTEAALGGEIEVPTLDGRVKLKIPAGTQTGEVFRL  308 (371)
T ss_pred             EEEecCcccCCCCCCCccEEEEEEeecCCCeEECCCceEeccccCHHHHhcCCEEEEEecCCCEEEecCCCCccCcEEEE
Confidence            99999999999899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCCCCCCCCEEEEEEEEcCCCCCcchHHHHHHHhhc
Q 013277          391 AKKGAPKLNKPSIRGDHLFTVKVTIPNRIRYVYSPSLTIIQLN  433 (446)
Q Consensus       391 ~g~G~P~~~~~~~~GdL~v~~~v~~P~~ls~~~~~~l~~l~~~  433 (446)
                      +|+|||..++ ..+|||||+++|++|++||.+|+++|++|...
T Consensus       309 ~gkG~p~~~~-~~~GDl~v~v~v~~P~~ls~~q~~lL~~~~~~  350 (371)
T COG0484         309 RGKGMPKLRS-GGRGDLYVRVKVETPKNLSDEQKELLEEFAKS  350 (371)
T ss_pred             cCCCccccCC-CCcCCEEEEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            9999998765 45799999999999999999999999998763

>PRK14296 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1e-82  Score=645.95  Aligned_cols=344  Identities=34%  Similarity=0.640  Sum_probs=302.2

Q ss_pred             CcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhhhhccccceeeccC--CC
Q 013277           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVG--GG  153 (446)
Q Consensus        76 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~~~~~--~~  153 (446)
                      .+|||++|||+++|+.+|||+|||+||++||||+|+++.++++|++|++||+||+||+||+.||+||+++++.+.+  ++
T Consensus         3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~~~~~~~~~~~   82 (372)
T PRK14296          3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYDQFGHAAFDGSSGFSSN   82 (372)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhhhhhhccchhhcCCCCcCcC
Confidence            4799999999999999999999999999999999988889999999999999999999999999999887653111  11


Q ss_pred             CCCCc-----------CCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeEeeeeecccccccceeeeeccce
Q 013277          154 SSAYT-----------TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHL  222 (446)
Q Consensus       154 ~~~~~-----------~~~~d~F~~fFg~~~g~~~~~~~~~~~~~~~~~~~~g~di~~~l~ltlee~~~G~~k~~~~~~~  222 (446)
                      .+++.           .++.|+|++||+++    +       +  +.....++.|++++|.|||+|+|+|+++++.+++.
T Consensus        83 ~~~~~~~~~~~~~~g~~~f~d~f~~~fggg----~-------~--~~~~~~~g~di~~~l~ltlee~~~G~~~~i~~~~~  149 (372)
T PRK14296         83 FGDFEDLFSNMGSSGFSSFTNIFSDFFGSN----K-------S--DYQRSTKGQSVSLDIYLTFKELLFGVDKIIELDLL  149 (372)
T ss_pred             CCccccccccccccccccchhhhhhhcCCC----c-------c--CCCCcCCCCCeEEEeeccHHHhhCCeeEEEEEeee
Confidence            01110           01223444444310    0       0  01123468899999999999999999999999999


Q ss_pred             eecccccCCccccCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeecCCceEEEEeeEEEEEeC
Q 013277          223 ETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVP  302 (446)
Q Consensus       223 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip  302 (446)
                      +.|..|+|+|........+|+.|+|+|.++...+.++.++++..+|+.|+|+|+++.+.|..|+|.|.+.+.++++|.||
T Consensus       150 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip  229 (372)
T PRK14296        150 TNCSKCFGSGAESNSDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIKNKCKNCKGKGKYLERKKIEVNIP  229 (372)
T ss_pred             eccCCCCCCccCCCCCCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceeecccccCCCCceEEEEEEEEEEEEC
Confidence            99999999999988888999999999999887777665566668999999999999999999999999999999999999


Q ss_pred             CCCCCCCEEEEccCCCCCCCCCCCccEEEEEEEEeccCcccC-CcceEEEEeecHHHHhCCCEEEEeccCCeEEEEeCCC
Q 013277          303 PGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRD-GIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPG  381 (446)
Q Consensus       303 ~G~~~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~-g~dL~~~~~Isl~eAl~G~~~~i~~ldG~~~l~i~~~  381 (446)
                      +|+++|++|+|+|+|++.+.++.+|||||+|++++|+.|+|+ |+|||++++|||+|||+|+++.|+||||+++|+||++
T Consensus       230 ~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~v~v~~h~~F~R~~G~DL~~~~~Isl~eAllG~~~~i~tldG~~~v~ip~~  309 (372)
T PRK14296        230 KGIRPNQQIKLSQKGHASLNNGVNGDLIIDIYLKESKVFEIINNNDILMTYNISYLDAILGNEIIIKTLDGDIKYKLPKS  309 (372)
T ss_pred             CCCCCCCEEEEeccccCCCCCCCCccEEEEEEEeCCCCEEEeCCCcEEEEEecCHHHHhCCCEEEeeCCCCCEEEEECCc
Confidence            999999999999999998777889999999999999999995 8999999999999999999999999999988999999


Q ss_pred             CCCCcEEEEccCCCCCCCCCCCCCCEEEEEEEEcCCCCCcchHHHHHHHhh
Q 013277          382 TQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRIRYVYSPSLTIIQL  432 (446)
Q Consensus       382 ~~~g~~~~l~g~G~P~~~~~~~~GdL~v~~~v~~P~~ls~~~~~~l~~l~~  432 (446)
                      ++||++++|+|+|||...+++.+|||||+|+|.||+.|+++|+++|++|+.
T Consensus       310 t~~g~~~ri~GkGmP~~~~~~~~GDL~V~~~V~~P~~Ls~~q~~~l~~l~~  360 (372)
T PRK14296        310 INSNELIIINNKGLYKSINKDKRGDLIIKVNIVVPKNLSKKEKELIEQIYE  360 (372)
T ss_pred             cCCCcEEEEcCCCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHHHHHHHHh
Confidence            999999999999999665555689999999999999999999999999874

>PRK14288 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=3.2e-80  Score=627.55  Aligned_cols=341  Identities=31%  Similarity=0.586  Sum_probs=296.1

Q ss_pred             CcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHhhcchhhhhhhhhhccccceeeccCCCC
Q 013277           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGS  154 (446)
Q Consensus        76 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~-~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~~~~~~~~  154 (446)
                      ..|||+||||+++||.+|||+|||+||++||||+|+ ++.++++|++|++||+||+||.+|++||+||+++++.+.+ +.
T Consensus         2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~~~~~~~-~~   80 (369)
T PRK14288          2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKKGLNQAGA-SQ   80 (369)
T ss_pred             CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhcccccccCCC-Cc
Confidence            579999999999999999999999999999999998 4678999999999999999999999999999987653211 11


Q ss_pred             CCCcCCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeEeeeeecccccccceeeeeccceeecccccCCccc
Q 013277          155 SAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAK  234 (446)
Q Consensus       155 ~~~~~~~~d~F~~fFg~~~g~~~~~~~~~~~~~~~~~~~~g~di~~~l~ltlee~~~G~~k~~~~~~~~~C~~C~G~G~~  234 (446)
                      +.| .++|+.|++||+..||+ ++.     +. .+....++.|+.++|.|||+|+|+|+++++.+++.+.|+.|+|+|..
T Consensus        81 ~~~-~~~f~~~~~~F~~~fg~-g~~-----~~-~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~  152 (369)
T PRK14288         81 SDF-SDFFEDLGSFFEDAFGF-GAR-----GS-KRQKSSIAPDYLQTIELSFKEAVFGCKKTIKVQYQSVCESCDGTGAK  152 (369)
T ss_pred             ccc-ccchhhHHHHHHhhcCC-CCc-----cc-CcCCCCCCCCeeEeccccHHHHhCCeEEEEEEEeeccCCCCCCcccC
Confidence            112 13344344455432221 000     00 11123468899999999999999999999999999999999999998


Q ss_pred             cCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeecCCceEEEEeeEEEEEeCCCCCCCCEEEEc
Q 013277          235 MGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVV  314 (446)
Q Consensus       235 ~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i~l~  314 (446)
                      .. ...+|+.|+|+|.++...    |++++..+|+.|+|+|+++.+.|..|.|.|.+.+.++++|.||+|+++|++|+|+
T Consensus       153 ~~-~~~~C~~C~G~G~~~~~~----g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IP~G~~~G~~i~l~  227 (369)
T PRK14288        153 DK-ALETCKQCNGQGQVFMRQ----GFMSFAQTCGACQGKGKIIKTPCQACKGKTYILKDEEIDAIIPEGIDDQNRMVLK  227 (369)
T ss_pred             CC-CCcCCCCCCCCcEEEEEe----ceEEEEEecCCCCCCceEccccCccCCCcceEEEEEEEEEecCCCCCCCCEEEEc
Confidence            76 578999999999876542    7777778999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEEEEeecHHHHhCCCEEEEeccCCe-EEEEeCCCCCCCcEEEEccC
Q 013277          315 GEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGI-SELQVPPGTQPGDVLVLAKK  393 (446)
Q Consensus       315 g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~~ldG~-~~l~i~~~~~~g~~~~l~g~  393 (446)
                      |+|++.+ ++.+|||||+|+|++|+.|+|+|+||+++++|||.|||+|+++.|+||||+ ++|+||++++||++++|+|+
T Consensus       228 g~G~~~~-~~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~v~tLdG~~l~i~i~~~~~~g~~~~i~g~  306 (369)
T PRK14288        228 NKGNEYE-KGKRGDLYLEARVKEDEHFKREGCDLFIEAPVFFTTIALGHTIKVPSLKGDELELKIPRNARDRQTFAFRNE  306 (369)
T ss_pred             cCccCCC-CCCCCCEEEEEEEEECCCcEEeCCEEEEEEecCHHHHhcCCEEEeecCCCCEEEEEeCCCCCCCcEEEEcCC
Confidence            9999976 578999999999999999999999999999999999999999999999997 68999999999999999999


Q ss_pred             CCCCCCCCCCCCCEEEEEEEEcCCCCCcchHHHHHHHhh
Q 013277          394 GAPKLNKPSIRGDHLFTVKVTIPNRIRYVYSPSLTIIQL  432 (446)
Q Consensus       394 G~P~~~~~~~~GdL~v~~~v~~P~~ls~~~~~~l~~l~~  432 (446)
                      |||..+. ..+|||||+|+|.||++|+++|+++|++|+.
T Consensus       307 G~p~~~~-~~~GDL~v~~~v~~P~~ls~~q~~~l~~~~~  344 (369)
T PRK14288        307 GVKHPES-SYRGSLIVELQVIYPKSLNKEQQELLEKLHA  344 (369)
T ss_pred             CCCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHh
Confidence            9997653 4579999999999999999999999999874

>PRK14276 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=8e-80  Score=627.33  Aligned_cols=345  Identities=43%  Similarity=0.796  Sum_probs=309.2

Q ss_pred             CcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhhhhccccceeeccCC---
Q 013277           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGG---  152 (446)
Q Consensus        76 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~~~~~~---  152 (446)
                      ..|||+||||+++||.+|||+|||+||++||||+|+++.+.++|++|++||++|+||.+|++||+||+++++.+.++   
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~~~~~~~~~~~   82 (380)
T PRK14276          3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAGANGGFGGGAG   82 (380)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCccccCCCCCCCC
Confidence            46999999999999999999999999999999999988899999999999999999999999999999887643211   


Q ss_pred             CCCCCc-----CCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeEeeeeecccccccceeeeeccceeeccc
Q 013277          153 GSSAYT-----TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEV  227 (446)
Q Consensus       153 ~~~~~~-----~~~~d~F~~fFg~~~g~~~~~~~~~~~~~~~~~~~~g~di~~~l~ltlee~~~G~~k~~~~~~~~~C~~  227 (446)
                      +.++|.     .++.|+|++||+++  +  +.       +......++.|+.+.|.|||||+|+|+++++.+.+.+.|+.
T Consensus        83 ~~~~~~~~~~~~~~~d~f~~~fgg~--~--~~-------~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~~~~~~C~~  151 (380)
T PRK14276         83 GFGGFDGSGGFGGFEDIFSSFFGGG--G--AR-------RNPNAPRQGDDLQYRVNLDFEEAIFGKEKEVSYNREATCHT  151 (380)
T ss_pred             CCCCccccccccchhhHHHHHhCcc--c--cc-------cCcCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeccccCCC
Confidence            111111     23446777777631  0  00       00112346889999999999999999999999999999999


Q ss_pred             ccCCccccCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeecCCceEEEEeeEEEEEeCCCCCC
Q 013277          228 CTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVST  307 (446)
Q Consensus       228 C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~  307 (446)
                      |+|+|........+|+.|+|+|.++...++++|++++..+|+.|+|+|++++++|..|.|.|.+.+.++++|.||+|+++
T Consensus       152 C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~  231 (380)
T PRK14276        152 CNGSGAKPGTSPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIKEPCQTCHGTGHEKQAHTVSVKIPAGVET  231 (380)
T ss_pred             CcCcccCCCCCCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccccCCCCCCCCceEEEEEEEEEEEeCCCccC
Confidence            99999998888899999999999998888999999999999999999999999999999999999999999999999999


Q ss_pred             CCEEEEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEEEEeecHHHHhCCCEEEEeccCCeEEEEeCCCCCCCcE
Q 013277          308 GSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDV  387 (446)
Q Consensus       308 G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~~ldG~~~l~i~~~~~~g~~  387 (446)
                      |++|+|+|+|++.+++..+|||||+|+|++|+.|+|+|+||+++++|||.|||+|++++|+|+||+++|+||+++++|++
T Consensus       232 G~~i~l~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tldg~i~v~ip~g~~~g~~  311 (380)
T PRK14276        232 GQQIRLQGQGEAGFNGGPYGDLYVVFRVEPSKKFERDGSTIYYTLPISFVQAALGDTVEVPTVHGDVELKIPAGTQTGKK  311 (380)
T ss_pred             CcEEEEeccccCCCCCCCCcCEEEEEEEEECcceeeecceEEEEEecCHHHHhCCCeEEEEcCCCcEEEEECCCCCCCCE
Confidence            99999999999987777789999999999999999999999999999999999999999999999989999999999999


Q ss_pred             EEEccCCCCCCCCCCCCCCEEEEEEEEcCCCCCcchHHHHHHHhh
Q 013277          388 LVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRIRYVYSPSLTIIQL  432 (446)
Q Consensus       388 ~~l~g~G~P~~~~~~~~GdL~v~~~v~~P~~ls~~~~~~l~~l~~  432 (446)
                      ++|+|+|||..+. ..+|||||+|+|.||+.|+++|+++|++|+.
T Consensus       312 ~~i~g~G~p~~~~-~~~GDL~V~~~v~~P~~l~~~q~~~l~~~~~  355 (380)
T PRK14276        312 FRLRGKGAPKLRG-GGNGDQHVTVNIVTPTKLNDAQKEALKAFAK  355 (380)
T ss_pred             EEECCCCcCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHh
Confidence            9999999998654 3579999999999999999999999999874

>PRK14280 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1e-79  Score=625.80  Aligned_cols=345  Identities=45%  Similarity=0.823  Sum_probs=309.1

Q ss_pred             CcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhhhhccccceeeccCCCC-
Q 013277           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGS-  154 (446)
Q Consensus        76 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~~~~~~~~-  154 (446)
                      ..|||+||||+++|+.+|||+|||+||++||||+|+++.++++|++|++||++|+||.+|+.||+||+++++.+.+++. 
T Consensus         3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~~~~   82 (376)
T PRK14280          3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYDQFGHAGPNQGFGGGGF   82 (376)
T ss_pred             CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHHHHHhcCccccccCcCCCCC
Confidence            4699999999999999999999999999999999988889999999999999999999999999999987764321110 


Q ss_pred             --CCCc--CCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeEeeeeecccccccceeeeeccceeecccccC
Q 013277          155 --SAYT--TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTG  230 (446)
Q Consensus       155 --~~~~--~~~~d~F~~fFg~~~g~~~~~~~~~~~~~~~~~~~~g~di~~~l~ltlee~~~G~~k~~~~~~~~~C~~C~G  230 (446)
                        ..|.  .++.|+|++||+++  +  .       ........++.|+.++|.|||+|+|+|+++++.+++.+.|+.|+|
T Consensus        83 ~~~~~~~~~~~~d~f~~~fgg~--~--~-------~~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G  151 (376)
T PRK14280         83 GGGDFGGGFGFEDIFSSFFGGG--G--R-------RRDPNAPRQGADLQYTMTLTFEEAVFGKEKEIEIPKEETCDTCHG  151 (376)
T ss_pred             CCCCccccccchhhHHHHhCCc--c--c-------cCcccccccccCEEEEEEEEHHHHhCCceeEEEEeeeccCCCCCC
Confidence              0111  13457788887631  1  0       000112346889999999999999999999999999999999999


Q ss_pred             CccccCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeecCCceEEEEeeEEEEEeCCCCCCCCE
Q 013277          231 TGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSI  310 (446)
Q Consensus       231 ~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~  310 (446)
                      +|........+|+.|+|+|.++...++++|++++..+|+.|+|+|+++.+.|..|+|.|.+.+.++++|.||+|+++|++
T Consensus       152 ~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~i~V~Ip~G~~~G~~  231 (376)
T PRK14280        152 SGAKPGTSKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIKEKCPTCHGKGKVRKRKKINVKIPAGVDNGQQ  231 (376)
T ss_pred             cccCCCCCCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCceecCCCCCCCCceEEEEEEEEEEEeCCCCcCCcE
Confidence            99998888899999999999988888899999988999999999999999999999999999999999999999999999


Q ss_pred             EEEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEEEEeecHHHHhCCCEEEEeccCCeEEEEeCCCCCCCcEEEE
Q 013277          311 LRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVL  390 (446)
Q Consensus       311 i~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~~ldG~~~l~i~~~~~~g~~~~l  390 (446)
                      |+|+|+|++.++++.+|||||+|++++|+.|+|+|+||++++.|||.|||+|+++.|+|+||++.|+||+++++|++++|
T Consensus       232 i~l~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldg~i~v~ip~g~~~g~~~~i  311 (376)
T PRK14280        232 IRVSGEGEPGVNGGPAGDLYVVFRVRPHEFFERDGDDIYCEMPLTFAQAALGDEIEVPTLHGKVKLKIPAGTQTGTQFRL  311 (376)
T ss_pred             EEEcccccCCCCCCCCcCEEEEEEEecCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCceEEEEECCCCCCCcEEEE
Confidence            99999999987777899999999999999999999999999999999999999999999999988999999999999999


Q ss_pred             ccCCCCCCCCCCCCCCEEEEEEEEcCCCCCcchHHHHHHHhh
Q 013277          391 AKKGAPKLNKPSIRGDHLFTVKVTIPNRIRYVYSPSLTIIQL  432 (446)
Q Consensus       391 ~g~G~P~~~~~~~~GdL~v~~~v~~P~~ls~~~~~~l~~l~~  432 (446)
                      +|+|||..+. ..+|||||+|+|.||+.||++|+++|++|..
T Consensus       312 ~g~G~p~~~~-~~~GDL~v~~~v~~P~~Ls~~q~~~l~~l~~  352 (376)
T PRK14280        312 KGKGVPNVRG-YGQGDQYVVVRVVTPTKLTDRQKELLREFAE  352 (376)
T ss_pred             cCCCCCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHh
Confidence            9999997654 3689999999999999999999999999874

>PRK14298 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=8.2e-80  Score=625.74  Aligned_cols=343  Identities=43%  Similarity=0.777  Sum_probs=307.6

Q ss_pred             CcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhhhhccccceeeccCCC--
Q 013277           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGG--  153 (446)
Q Consensus        76 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~~~~~~~--  153 (446)
                      .+|||+||||+++|+.+|||+|||+||++||||+|+++.+.++|++|++||++|+||.+|+.||+||+++++.+.++.  
T Consensus         4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~~~~   83 (377)
T PRK14298          4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGIDNQYSAEDI   83 (377)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhhhhhhcCccccccccCcccc
Confidence            579999999999999999999999999999999998888999999999999999999999999999998765321110  


Q ss_pred             --CCCCcCCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeEeeeeecccccccceeeeeccceeecccccCC
Q 013277          154 --SSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGT  231 (446)
Q Consensus       154 --~~~~~~~~~d~F~~fFg~~~g~~~~~~~~~~~~~~~~~~~~g~di~~~l~ltlee~~~G~~k~~~~~~~~~C~~C~G~  231 (446)
                        .+.+ .++.|+|++||+++  +  +     .   ++....++.|++++|.|||+|+|+|+++++.+++.+.|+.|+|+
T Consensus        84 ~~~~~~-~~~~d~f~~~Fgg~--~--~-----~---~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~  150 (377)
T PRK14298         84 FRGADF-GGFGDIFEMFFGGG--G--R-----R---GRMGPRRGSDLRYDLYITLEEAAFGVRKDIDVPRAERCSTCSGT  150 (377)
T ss_pred             cccCCc-CcchhhhHhhhcCC--C--c-----c---CCCCCCCCCCEEEEEEEEHHHhhCCeEEEEEEEeeccCCCCCCC
Confidence              0111 23346777777631  0  0     0   01123468899999999999999999999999999999999999


Q ss_pred             ccccCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeecCCceEEEEeeEEEEEeCCCCCCCCEE
Q 013277          232 GAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSIL  311 (446)
Q Consensus       232 G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i  311 (446)
                      |...+....+|+.|+|+|.++...+.++|++++..+|+.|+|+|+++.+.|..|.|.|.+.+.++++|.||||+++|++|
T Consensus       151 G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~i  230 (377)
T PRK14298        151 GAKPGTSPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIESPCPVCSGTGKVRKTRKITVNVPAGADSGLRL  230 (377)
T ss_pred             cccCCCCCCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcccCCCCCCCCCccEEEEEEEEEecCCCCCCCCCEE
Confidence            99988888999999999999888888888888889999999999999999999999999999999999999999999999


Q ss_pred             EEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEEEEeecHHHHhCCCEEEEeccCCeEEEEeCCCCCCCcEEEEc
Q 013277          312 RVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLA  391 (446)
Q Consensus       312 ~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~~ldG~~~l~i~~~~~~g~~~~l~  391 (446)
                      +|+|+|++.+.++.+|||||+|++++|+.|+|+|+||+++++|+|.|||+|+++.|+|+||++.|+||+++++|++++|+
T Consensus       231 ~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~i~v~ip~g~~~g~~lri~  310 (377)
T PRK14298        231 KLSGEGEAGSPGAPSGDLYIVLHVKEHDYFERVGDDIISEIPISFTQAALGADIMVPTLYGKVKMNIPPGTQTHSVFRLK  310 (377)
T ss_pred             EEecccCCCCCCCCCcCEEEEEEEecCCCeEEEcCcEEEEEEeCHHHHhCCCeEEEecCCCCEEEEeCCCcccCCEEEEC
Confidence            99999999877788999999999999999999999999999999999999999999999999889999999999999999


Q ss_pred             cCCCCCCCCCCCCCCEEEEEEEEcCCCCCcchHHHHHHHhh
Q 013277          392 KKGAPKLNKPSIRGDHLFTVKVTIPNRIRYVYSPSLTIIQL  432 (446)
Q Consensus       392 g~G~P~~~~~~~~GdL~v~~~v~~P~~ls~~~~~~l~~l~~  432 (446)
                      |+|||..+. ..+|||||+|+|.+|+.|+++|+++|++|..
T Consensus       311 g~G~p~~~~-~~~GDL~V~~~V~~P~~ls~~~~~ll~~l~~  350 (377)
T PRK14298        311 DKGMPRLHG-HGKGDQLVKVIVKTPTKLTQEQKELLREFDE  350 (377)
T ss_pred             CCCCCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHh
Confidence            999997654 3589999999999999999999999999873

>PRK14287 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=9.6e-80  Score=624.47  Aligned_cols=344  Identities=42%  Similarity=0.805  Sum_probs=308.7

Q ss_pred             CcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhhhhccccceeeccCC-CC
Q 013277           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGG-GS  154 (446)
Q Consensus        76 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~~~~~~-~~  154 (446)
                      ..|||++|||+++|+.+|||+|||+||++||||+|++++++++|++|++||++|+||.+|+.||+||+++++.+.++ +.
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~~~~~~~~~~~   82 (371)
T PRK14287          3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTDPNQGFGGGGA   82 (371)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCcccccccCCCCC
Confidence            46999999999999999999999999999999999877889999999999999999999999999999876532211 11


Q ss_pred             CCCcCCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeEeeeeecccccccceeeeeccceeecccccCCccc
Q 013277          155 SAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAK  234 (446)
Q Consensus       155 ~~~~~~~~d~F~~fFg~~~g~~~~~~~~~~~~~~~~~~~~g~di~~~l~ltlee~~~G~~k~~~~~~~~~C~~C~G~G~~  234 (446)
                      ++| .++.|+|++||+++  +  +.     +  ......++.|++++|.|||+|+|+|+++++.+++.+.|+.|+|+|..
T Consensus        83 ~~f-~~~~d~f~~~fgg~--~--~~-----~--~~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~  150 (371)
T PRK14287         83 GDF-GGFSDIFDMFFGGG--G--GR-----R--NPNAPRQGADLQYTMTLEFKEAVFGKETEIEIPREETCGTCHGSGAK  150 (371)
T ss_pred             ccc-cchHHHHHhhhccc--c--CC-----C--CCCCCCCCCCEEEEEEEEHHHhcCCeEEEEEEeeeccCCCCCCcccC
Confidence            122 12447788888631  0  00     0  01113468899999999999999999999999999999999999999


Q ss_pred             cCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeecCCceEEEEeeEEEEEeCCCCCCCCEEEEc
Q 013277          235 MGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVV  314 (446)
Q Consensus       235 ~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i~l~  314 (446)
                      ......+|+.|+|+|.++...++++|++++..+|+.|+|+|+++.+.|..|.|.|.+.+.++++|.||+|+++|++|+|+
T Consensus       151 ~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~  230 (371)
T PRK14287        151 PGTKPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIKQKCATCGGKGKVRKRKKINVKVPAGIDHGQQLRVS  230 (371)
T ss_pred             CCCCCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccccccCCCCCCeeEEeeeEEEEEEECCcCCCCCEEEEc
Confidence            88888999999999999988899999999989999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEEEEeecHHHHhCCCEEEEeccCCeEEEEeCCCCCCCcEEEEccCC
Q 013277          315 GEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLAKKG  394 (446)
Q Consensus       315 g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~~ldG~~~l~i~~~~~~g~~~~l~g~G  394 (446)
                      |+|++.++++.+|||||+|++++|+.|+|+|+||++++.|+|.||++|++++|+|+||+++|+||+++++|++++|+|+|
T Consensus       231 G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldg~i~v~ip~g~~~g~~~ri~g~G  310 (371)
T PRK14287        231 GQGEAGVNGGPPGDLYVVFNVKPHEFFERDGDDIYCEMPLTFPQVALGDEIEVPTLNGKVKLKIPAGTQTGTSFRLRGKG  310 (371)
T ss_pred             cCCcCCCCCCCCccEEEEEEEecCCCEEEecCCeEEEEeccHHHHhCCCEEEEEcCCCCEEEEECCCccCCcEEEEcCCC
Confidence            99999877778999999999999999999999999999999999999999999999999899999999999999999999


Q ss_pred             CCCCCCCCCCCCEEEEEEEEcCCCCCcchHHHHHHHhh
Q 013277          395 APKLNKPSIRGDHLFTVKVTIPNRIRYVYSPSLTIIQL  432 (446)
Q Consensus       395 ~P~~~~~~~~GdL~v~~~v~~P~~ls~~~~~~l~~l~~  432 (446)
                      ||..++ ..+|||||+|+|.+|+.|+.+|+++|++|..
T Consensus       311 ~p~~~~-~~~GDL~V~~~v~~P~~l~~~q~~ll~~l~~  347 (371)
T PRK14287        311 VPNVHG-RGQGDQHVQVRVVTPKNLTEKEKELMREFAG  347 (371)
T ss_pred             ccCCCC-CCCCCEEEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            997654 3579999999999999999999999999873

>PRK14277 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=9.2e-80  Score=628.08  Aligned_cols=349  Identities=41%  Similarity=0.786  Sum_probs=308.3

Q ss_pred             cCcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhcchhhhhhhhhhccccceeecc-CC
Q 013277           75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTV-GG  152 (446)
Q Consensus        75 ~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~~~~-~~  152 (446)
                      ...|||+||||+++|+.+|||+|||+||++||||+|++ +.++++|++|++||+||+||.+|+.||+||+++++.+. ++
T Consensus         3 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~~   82 (386)
T PRK14277          3 AKKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAAFDPGGFGQ   82 (386)
T ss_pred             CCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhcccccccccccc
Confidence            35799999999999999999999999999999999984 67889999999999999999999999999988775321 10


Q ss_pred             C-C--CC-----Cc---CCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeEeeeeecccccccceeeeeccc
Q 013277          153 G-S--SA-----YT---TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSH  221 (446)
Q Consensus       153 ~-~--~~-----~~---~~~~d~F~~fFg~~~g~~~~~~~~~~~~~~~~~~~~g~di~~~l~ltlee~~~G~~k~~~~~~  221 (446)
                      + .  ++     +.   .++.|+|++||+..+|+.      +  ..+.....++.|+++.|.|||+|+|+|+++++.+++
T Consensus        83 ~~~~~~g~~~~~~~~~~~~~~d~f~~~F~~~fgg~------~--~~~~~~~~kg~di~~~l~vtLee~~~G~~~~v~~~r  154 (386)
T PRK14277         83 GGFGQGGFGGGGFDFDFGGFGDIFEDIFGDFFGTG------R--RRAETGPQKGADIRYDLELTFEEAAFGTEKEIEVER  154 (386)
T ss_pred             CCcCCCCccccCccccccchhHHHHHhhcccccCC------C--cCCCCCCCCCCCEEEEEEEEHHHHhCCeEEEEEEEe
Confidence            0 0  11     11   122356777776433210      0  001112347889999999999999999999999999


Q ss_pred             eeecccccCCccccCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeecCCceEEEEeeEEEEEe
Q 013277          222 LETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKV  301 (446)
Q Consensus       222 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~I  301 (446)
                      .+.|+.|+|+|........+|+.|+|+|.++...++++|++++..+|+.|+|+|+++.+.|..|+|.|.+.+.++++|.|
T Consensus       155 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~I  234 (386)
T PRK14277        155 FEKCDVCKGSGAKPGSKPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIITDPCNKCGGTGRIRRRRKIKVNI  234 (386)
T ss_pred             eccCCCCCCCCcCCCCCCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeeccCCCCCCCCCcEEeeeeEEEEec
Confidence            99999999999998888899999999999998889999999998999999999999999999999999999999999999


Q ss_pred             CCCCCCCCEEEEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEEEEeecHHHHhCCCEEEEeccCCeEEEEeCCC
Q 013277          302 PPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPG  381 (446)
Q Consensus       302 p~G~~~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~~ldG~~~l~i~~~  381 (446)
                      |+|+++|++|+|+|+|++.+.++.+|||||+|+|++|+.|+|+|+||+++++|+|.|||+|+++.|+||||+++|.||++
T Consensus       235 p~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~~v~ip~g  314 (386)
T PRK14277        235 PAGIDDGQMITLRGEGEPGIKGGPNGDLYIVIKVKPHPLFKREGYNVYLEMPITFTDAALGGEIEIPTLDGKVKFTIPEG  314 (386)
T ss_pred             CCCccCCcEEEEccccccCCCCCCCccEEEEEEEecCCCeEEecCCEEEEEEcCHHHHhCCCEEEEEcCCCCEEEEECCC
Confidence            99999999999999999977677889999999999999999999999999999999999999999999999988999999


Q ss_pred             CCCCcEEEEccCCCCCCCCCCCCCCEEEEEEEEcCCCCCcchHHHHHHHhh
Q 013277          382 TQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRIRYVYSPSLTIIQL  432 (446)
Q Consensus       382 ~~~g~~~~l~g~G~P~~~~~~~~GdL~v~~~v~~P~~ls~~~~~~l~~l~~  432 (446)
                      +++|++++|+|+|||..++ ..+|||||+|+|.||+.|+++|+++|++|+.
T Consensus       315 ~~~g~~~ri~g~G~p~~~~-~~~GDL~v~~~V~~P~~Ls~~qk~~l~~l~~  364 (386)
T PRK14277        315 TQTGTKFRLRGKGIPHLRG-RGRGDQIVKVYIEVPKKLTEKQKELLREFEK  364 (386)
T ss_pred             CCCCCEEEECCCCCCCCCC-CCCCCEEEEEEEEeCCCCCHHHHHHHHHHHh
Confidence            9999999999999998654 3589999999999999999999999999873

>PRK14286 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.7e-79  Score=622.90  Aligned_cols=345  Identities=43%  Similarity=0.791  Sum_probs=303.0

Q ss_pred             CcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhcchhhhhhhhhhccccceeeccCC-C
Q 013277           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGG-G  153 (446)
Q Consensus        76 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~~~~~~-~  153 (446)
                      ..|||++|||+++|+.+|||+|||+||++||||+|++ +.+.++|++|++||+||+||.+|+.||+||+++++.+.++ +
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~~~   82 (372)
T PRK14286          3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAGVNAGAGGFG   82 (372)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCchhhccccCCCC
Confidence            4799999999999999999999999999999999974 6788999999999999999999999999999877532111 1


Q ss_pred             CCC---Cc---CCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeEeeeeecccccccceeeeeccceeeccc
Q 013277          154 SSA---YT---TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEV  227 (446)
Q Consensus       154 ~~~---~~---~~~~d~F~~fFg~~~g~~~~~~~~~~~~~~~~~~~~g~di~~~l~ltlee~~~G~~k~~~~~~~~~C~~  227 (446)
                      .++   +.   .++.|+|++||+++.++.    +.   ..++....++.|++++|.|||||+|+|+++++.+++.+.|+.
T Consensus        83 ~~~~~~~~~~~~~~~d~f~~ffgg~~~~~----~~---~~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~  155 (372)
T PRK14286         83 QGAYTDFSDIFGDFGDIFGDFFGGGRGGG----SG---GGRRSGPQRGSDLRYNLEVSLEDAALGREYKIEIPRLESCVD  155 (372)
T ss_pred             CCCcccccccccchhhHHHHhhCCCccCC----Cc---ccccCCCCCCCCeeEEEEEEHHHHhCCeeEEEEeeccccCCC
Confidence            111   11   234477888887421110    00   001112357889999999999999999999999999999999


Q ss_pred             ccCCccccCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeecCCceEEEEeeEEEEEeCCCCCC
Q 013277          228 CTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVST  307 (446)
Q Consensus       228 C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~  307 (446)
                      |+|+|........+|+.|+|+|.++..    .|++++..+|+.|+|+|+++.+.|..|+|.|.+.+.++++|.||+|+++
T Consensus       156 C~G~G~~~~~~~~~C~~C~G~G~v~~~----~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~  231 (372)
T PRK14286        156 CNGSGASKGSSPTTCPDCGGSGQIRRT----QGFFSVATTCPTCRGKGTVISNPCKTCGGQGLQEKRRTINIKIPPGVET  231 (372)
T ss_pred             CcCCCcCCCCCCccCCCCcCeEEEEEE----eceEEEEEeCCCCCceeeEecccCCCCCCCcEEecceEEEEEECCCCCC
Confidence            999999988888999999999988664    3788877999999999999999999999999999999999999999999


Q ss_pred             CCEEEEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEEEEeecHHHHhCCCEEEEeccCCe-EEEEeCCCCCCCc
Q 013277          308 GSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGI-SELQVPPGTQPGD  386 (446)
Q Consensus       308 G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~~ldG~-~~l~i~~~~~~g~  386 (446)
                      |++|+|+|+|++.+++..+|||||+|+|++|+.|+|+|+||++++.|+|.|||+|+++.|+||||+ ++|+||+++++|+
T Consensus       232 G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~i~v~ip~g~~~g~  311 (372)
T PRK14286        232 GSRLKVSGEGEAGPNGGPHGDLYVVTHIKKHELFERQGNDLILVRKISLAQAILGAEIEVPTIDGKKAKMKIPEGTESGQ  311 (372)
T ss_pred             CCEEEECCccccCCCCCCCceEEEEEEEccCCCEEEecCCEEEEEEECHHHHhCCCEEEEeCCCCCEEEEEeCCccCCCc
Confidence            999999999999887777899999999999999999999999999999999999999999999997 6899999999999


Q ss_pred             EEEEccCCCCCCCCCCCCCCEEEEEEEEcCCCCCcchHHHHHHHhh
Q 013277          387 VLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRIRYVYSPSLTIIQL  432 (446)
Q Consensus       387 ~~~l~g~G~P~~~~~~~~GdL~v~~~v~~P~~ls~~~~~~l~~l~~  432 (446)
                      +++|+|+|||..+. ..+|||||+|+|.||+.|+++|+++|++|+.
T Consensus       312 ~~ri~G~G~P~~~~-~~~GDL~V~~~V~~P~~Ls~~qk~~l~~l~~  356 (372)
T PRK14286        312 VFRLKGHGMPYLGA-YGKGDQHVIVKIEIPKKITRRQRELIEEFAR  356 (372)
T ss_pred             EEEECCCCCCCCCC-CCCCcEEEEEEEECCCCCCHHHHHHHHHHHH
Confidence            99999999998654 3589999999999999999999999999874

>PRK14278 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=4.1e-79  Score=621.29  Aligned_cols=345  Identities=41%  Similarity=0.726  Sum_probs=305.6

Q ss_pred             CcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhhhhccccceeecc-CCCC
Q 013277           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTV-GGGS  154 (446)
Q Consensus        76 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~~~~-~~~~  154 (446)
                      .+|||+||||+++|+.+|||+|||+||++||||+|+++.++++|++|++||+||+||.+|+.||+||++....+. +++.
T Consensus         2 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~~~~~~~~~~g~   81 (378)
T PRK14278          2 ARDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIVDLGGDPLESAGGGGGGF   81 (378)
T ss_pred             CCCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCccccccCCCCCC
Confidence            479999999999999999999999999999999998888899999999999999999999999999986332111 0111


Q ss_pred             C-CCcCCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeEeeeeecccccccceeeeeccceeecccccCCcc
Q 013277          155 S-AYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGA  233 (446)
Q Consensus       155 ~-~~~~~~~d~F~~fFg~~~g~~~~~~~~~~~~~~~~~~~~g~di~~~l~ltlee~~~G~~k~~~~~~~~~C~~C~G~G~  233 (446)
                      + .| .++.|+|++||+++ ++  +       ........++.|+++.|.|||+|+|+|+++++.+++.+.|+.|+|+|.
T Consensus        82 ~~~f-~~~~d~f~~ffgg~-g~--~-------~~~~~~~~~g~d~~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~  150 (378)
T PRK14278         82 GGGF-GGLGDVFEAFFGGG-AA--S-------RGPRGRVRPGSDSLLRMRLDLEECATGVTKQVTVDTAVLCDRCHGKGT  150 (378)
T ss_pred             CcCc-CchhHHHHHHhCCC-CC--C-------CCCccCCCCCCCeEEEEEEEHHHhcCCeEEEEEEEeeccCCCCcCccC
Confidence            1 11 23447788888631 10  0       000112346889999999999999999999999999999999999999


Q ss_pred             ccCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeecCCceEEEEeeEEEEEeCCCCCCCCEEEE
Q 013277          234 KMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRV  313 (446)
Q Consensus       234 ~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i~l  313 (446)
                      +......+|+.|+|+|.++...++.+|++++..+|+.|+|+|+++.++|..|+|.|.+.+.++++|.||||+++|++|+|
T Consensus       151 ~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~  230 (378)
T PRK14278        151 AGDSKPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIPDPCHECAGDGRVRARREITVKIPAGVGDGMRIRL  230 (378)
T ss_pred             CCCCCceecCCccCceEEEEEEeccceeEEEEEECCCCCccceeeCCCCCCCCCceeEecceEEEEEECCCCCCCcEEEE
Confidence            98888899999999999988888889999988999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEEEEeecHHHHhCCCEEEEecc-CCeEEEEeCCCCCCCcEEEEcc
Q 013277          314 VGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTV-EGISELQVPPGTQPGDVLVLAK  392 (446)
Q Consensus       314 ~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~~l-dG~~~l~i~~~~~~g~~~~l~g  392 (446)
                      +|+|++.++++.+|||||+|++++|+.|+|+|+||+++++|+|.||++|+++.|+|+ ++.++|+||+++++|++++|+|
T Consensus       231 ~g~G~~~~~~~~~GDL~v~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tld~~~i~v~ip~g~~~g~~lrl~g  310 (378)
T PRK14278        231 AAQGEVGPGGGPAGDLYVEVHEQPHDVFVRDGDDLHCTVSVPMVDAALGTTVTVEAILDGPSEITIPPGTQPGSVITLRG  310 (378)
T ss_pred             ccCcCCCCCCCCCCCEEEEEEECcCCCEEEcCCCEEEEEecCHHHHhcCCeEEEecCCCCeEEEEeCCCcCCCcEEEECC
Confidence            999999887778899999999999999999999999999999999999999999999 5567899999999999999999


Q ss_pred             CCCCCCCCCCCCCCEEEEEEEEcCCCCCcchHHHHHHHhh
Q 013277          393 KGAPKLNKPSIRGDHLFTVKVTIPNRIRYVYSPSLTIIQL  432 (446)
Q Consensus       393 ~G~P~~~~~~~~GdL~v~~~v~~P~~ls~~~~~~l~~l~~  432 (446)
                      +|||..+. ..+|||||+|+|.||+.|+++|+++|++++.
T Consensus       311 ~G~p~~~~-~~~GDL~V~~~V~~P~~Ls~~qk~~l~~~~~  349 (378)
T PRK14278        311 RGMPHLRS-GGRGDLHAHVEVVVPTRLDHEDIELLRELKA  349 (378)
T ss_pred             CCCCCCCC-CCCCCEEEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            99997653 4689999999999999999999999999873

>PRK14297 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=5e-79  Score=621.89  Aligned_cols=347  Identities=45%  Similarity=0.829  Sum_probs=308.7

Q ss_pred             CcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhcchhhhhhhhhhccccceeeccC---
Q 013277           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVG---  151 (446)
Q Consensus        76 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~~~~~---  151 (446)
                      ..|||++|||+++|+.+|||+|||+||++||||+|+. +.++++|++|++||++|+||.+|+.||+||+++++.+.+   
T Consensus         3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~~~~~~~~~~   82 (380)
T PRK14297          3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTADFNGAGGFGS   82 (380)
T ss_pred             CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCcccccccCCCCC
Confidence            4699999999999999999999999999999999974 578899999999999999999999999999988753211   


Q ss_pred             CCCCCCc----CCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeEeeeeecccccccceeeeeccceeeccc
Q 013277          152 GGSSAYT----TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEV  227 (446)
Q Consensus       152 ~~~~~~~----~~~~d~F~~fFg~~~g~~~~~~~~~~~~~~~~~~~~g~di~~~l~ltlee~~~G~~k~~~~~~~~~C~~  227 (446)
                      ++.+++.    .++.|+|++||++++++   .     + +++....++.|++++|.|||||+|+|+++++.+++.+.|+.
T Consensus        83 ~~~~~~~~~~~~~~~d~f~~~fgg~~g~---~-----~-~~~~~~~kg~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~  153 (380)
T PRK14297         83 GGFGGFDFSDMGGFGDIFDSFFGGGFGS---S-----S-RRRNGPQRGADIEYTINLTFEEAVFGVEKEISVTRNENCET  153 (380)
T ss_pred             CCCCCcCcccccchhHHHHHHhccCccc---c-----c-cccCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeeeccCCC
Confidence            1111121    13447788888742111   0     0 01112346889999999999999999999999999999999


Q ss_pred             ccCCccccCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeecCCceEEEEeeEEEEEeCCCCCC
Q 013277          228 CTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVST  307 (446)
Q Consensus       228 C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~  307 (446)
                      |+|+|...+....+|+.|+|+|.++...++++|++++..+|+.|+|+|.++.+.|..|+|.|.+.+.++++|.||+|+++
T Consensus       154 C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~i~V~Ip~G~~~  233 (380)
T PRK14297        154 CNGTGAKPGTSPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIEDPCNKCHGKGKVRKNRKIKVNVPAGVDT  233 (380)
T ss_pred             cccccccCCCcCccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcCCCCCCCCCCeEEEeEeEEEEEeCCCCCC
Confidence            99999998888899999999999988888899999988999999999999999999999999999999999999999999


Q ss_pred             CCEEEEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEEEEeecHHHHhCCCEEEEeccCCeEEEEeCCCCCCCcE
Q 013277          308 GSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDV  387 (446)
Q Consensus       308 G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~~ldG~~~l~i~~~~~~g~~  387 (446)
                      |++|+|+|+|++.+.+..+|||||+|+|++|+.|+|+|+||+++++|+|.|||+|++++|+|+||+++|+||+++++|++
T Consensus       234 G~~I~l~g~G~~~~~~~~~GDL~v~v~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldg~~~v~ip~g~~~g~~  313 (380)
T PRK14297        234 GNVIPLRGQGEHGKNGGPTGDLYINIRVAPHKTFKRKGFDIYIDKHISFAKAALGTEIKVPTVDGEVKYEVPAGTQPGTV  313 (380)
T ss_pred             CcEEEEecCccCCCCCCCCccEEEEEEEcCCCCEEEeCCCEEEEEEeCHHHHhCCCcEEEEcCCCcEEEEECCCcCCCCE
Confidence            99999999999987777899999999999999999999999999999999999999999999999989999999999999


Q ss_pred             EEEccCCCCCCCCCCCCCCEEEEEEEEcCCCCCcchHHHHHHHhh
Q 013277          388 LVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRIRYVYSPSLTIIQL  432 (446)
Q Consensus       388 ~~l~g~G~P~~~~~~~~GdL~v~~~v~~P~~ls~~~~~~l~~l~~  432 (446)
                      ++|+|+|||..+. ..+|||||+|+|.||+.|+++|+++|++|+.
T Consensus       314 ~ri~g~G~p~~~~-~~~GDL~v~~~v~~P~~ls~~q~~~l~~~~~  357 (380)
T PRK14297        314 FRLKGKGVPRVNS-TGRGNQYVTVIVDIPKKLNSKQKEALTMFME  357 (380)
T ss_pred             EEEcCCCcCCCCC-CCCCcEEEEEEEEcCCCCCHHHHHHHHHHHH
Confidence            9999999997653 4689999999999999999999999999875

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=100.00  E-value=5.6e-79  Score=624.40  Aligned_cols=334  Identities=32%  Similarity=0.579  Sum_probs=296.4

Q ss_pred             ccCcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhhhhccccceeeccCCC
Q 013277           74 CASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGG  153 (446)
Q Consensus        74 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~~~~~~~  153 (446)
                      +...|||+||||+++||.+|||+|||+||++||||+|++   .++|++|++||+||+||.+|+.||+||++++..+.   
T Consensus        25 ~~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~---~e~F~~i~~AYevLsD~~kR~~YD~~G~~~~~~~~---   98 (421)
T PTZ00037         25 VDNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD---PEKFKEISRAYEVLSDPEKRKIYDEYGEEGLEGGE---   98 (421)
T ss_pred             ccchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch---HHHHHHHHHHHHHhccHHHHHHHhhhcchhcccCC---
Confidence            336799999999999999999999999999999999853   58999999999999999999999999988765321   


Q ss_pred             CCCCcCCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeEeeeeecccccccceeeeeccceeecccccCCcc
Q 013277          154 SSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGA  233 (446)
Q Consensus       154 ~~~~~~~~~d~F~~fFg~~~g~~~~~~~~~~~~~~~~~~~~g~di~~~l~ltlee~~~G~~k~~~~~~~~~C~~C~G~G~  233 (446)
                       +  ..++.|+|+.||+++  +          .  +....++.|+.+.|.|||+|+|+|+++++.+++.+.|+.|+|+|.
T Consensus        99 -~--~~d~~d~f~~~Fggg--~----------~--~~~~~rg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~  161 (421)
T PTZ00037         99 -Q--PADASDLFDLIFGGG--R----------K--PGGKKRGEDIVSHLKVTLEQIYNGAMRKLAINKDVICANCEGHGG  161 (421)
T ss_pred             -C--CcchhhhHHHhhccc--c----------c--cccccCCCCEEEEeeeeHHHHhCCCceEEEeeccccccccCCCCC
Confidence             1  134567888888631  0          0  011246889999999999999999999999999999999999998


Q ss_pred             ccCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEec--eeeeecCCceEEEEeeEEEEEeCCCCCCCCEE
Q 013277          234 KMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVIS--EYCRKCSGEGRIRLKKNIKVKVPPGVSTGSIL  311 (446)
Q Consensus       234 ~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~--~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i  311 (446)
                      ... ...+|+.|+|+|.++...++++.++++..+|+.|+|+|+++.  ++|..|+|.|.+.+.++++|.||+|+++|++|
T Consensus       162 ~~~-~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~dG~~I  240 (421)
T PTZ00037        162 PKD-AFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPESKKCKNCSGKGVKKTRKILEVNIDKGVPNQHKI  240 (421)
T ss_pred             CCC-CCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceeccccccCCcCCCcceeeeeeEEEEeeCCCCCCCcEE
Confidence            654 578999999999987776665533455589999999999986  89999999999999999999999999999999


Q ss_pred             EEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEEEEeecHHHHhCCCEEEEeccCCe-EEEEeCCC--CCCCcEE
Q 013277          312 RVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGI-SELQVPPG--TQPGDVL  388 (446)
Q Consensus       312 ~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~~ldG~-~~l~i~~~--~~~g~~~  388 (446)
                      +|+|+|++.+ ++.+|||||+|++++|+.|+|+|+||+++++|+|+|||+|+++.|+||||+ +.|+||++  ++||+++
T Consensus       241 ~~~G~Gd~~~-~~~pGDLiv~I~~~ph~~F~R~G~DL~~~~~Isl~eAllG~~i~I~tLdG~~l~I~ip~g~vt~pg~~~  319 (421)
T PTZ00037        241 TFHGEADEKP-NEIPGNVVFILNEKPHDTFKREGGDLFITKKISLYEALTGFVFYITHLDGRKLLVNTPPGEVVKPGDIK  319 (421)
T ss_pred             EEecccCCCC-CCCCCcEEEEEEecCCCCcEEeCCeEEEEEeCCHHHHhcCCEEEeeCCCCCeEEEEeCCCcccCCCcEE
Confidence            9999999976 578999999999999999999999999999999999999999999999997 68999988  9999999


Q ss_pred             EEccCCCCCCCCCCCCCCEEEEEEEEcC--CCCCcchHHHHHHHhh
Q 013277          389 VLAKKGAPKLNKPSIRGDHLFTVKVTIP--NRIRYVYSPSLTIIQL  432 (446)
Q Consensus       389 ~l~g~G~P~~~~~~~~GdL~v~~~v~~P--~~ls~~~~~~l~~l~~  432 (446)
                      +|+|+|||..+++..+|||||+|+|.||  +.||++|+++|++|+.
T Consensus       320 ~I~geGmP~~~~~~~rGDL~V~~~V~~P~~~~Ls~~qk~ll~~l~~  365 (421)
T PTZ00037        320 VINNEGMPTYKSPFKKGNLYVTFEVIFPVDRKFTNEEKEILKSLFP  365 (421)
T ss_pred             EeCCCCcccCCCCCCCCCEEEEEEEEcCCCCCCCHHHHHHHHHhcc
Confidence            9999999987655578999999999999  9999999999999875

>PRK14279 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=7.8e-79  Score=621.52  Aligned_cols=352  Identities=37%  Similarity=0.660  Sum_probs=295.7

Q ss_pred             cCcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHhhcchhhhhhhhhhccccceeeccC--
Q 013277           75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVG--  151 (446)
Q Consensus        75 ~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~-~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~~~~~--  151 (446)
                      +.+|||+||||+++|+.+|||+|||+||++||||+|+ ++.+.++|++|++||+||+||+||+.||+||+++...+..  
T Consensus         7 ~~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~~~~~~g~~~~   86 (392)
T PRK14279          7 VEKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRRLFAGGGFGGR   86 (392)
T ss_pred             cccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhhhccccccccc
Confidence            4689999999999999999999999999999999997 4578999999999999999999999999999743221110  


Q ss_pred             -----CCCCCCc-------CCCcCccccccCCCCCCC----CCCCCCCcccccccccccCCceeEeeeeeccccccccee
Q 013277          152 -----GGSSAYT-------TNPFDLFETFFGPSMGGF----PGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEK  215 (446)
Q Consensus       152 -----~~~~~~~-------~~~~d~F~~fFg~~~g~~----~~~~~~~~~~~~~~~~~~g~di~~~l~ltlee~~~G~~k  215 (446)
                           ++.++|.       .++.++|+..+++..++|    +++++.+.+..+.....++.|++++|.|+|+|+|+|+++
T Consensus        87 ~~~~~~~~~g~~~~~~~~~~d~~~~f~~~~~~~~~~f~d~f~~~fg~~~~~~~~~~~~~g~di~~~l~ltLee~~~G~~~  166 (392)
T PRK14279         87 RFDGGGGFGGFGTGGDGAEFNLNDLFDAAGRGGGGGIGDLFGGLFNRGGGSARPSRPRRGNDLETETTLDFVEAAKGVTM  166 (392)
T ss_pred             cccCCCCCCCccccccccCcChhhhhcccccccccchhhhhhhhhcCCCcccccCCCCCCCCeEEEEEEEHHHHhCCeEE
Confidence                 0111111       122222221111111111    111110000011122357889999999999999999999


Q ss_pred             eeeccceeecccccCCccccCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeecCCceEEEEee
Q 013277          216 EFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKK  295 (446)
Q Consensus       216 ~~~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~  295 (446)
                      ++.+++.+.|+.|+|+|........+|+.|+|+|.++...    |++++..+|+.|+|+|+++.+.|..|.|.|.+.+.+
T Consensus       167 ~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~~  242 (392)
T PRK14279        167 PLRLTSPAPCTTCHGSGARPGTSPKVCPTCNGSGVISRNQ----GAFGFSEPCTDCRGTGSIIEDPCEECKGTGVTTRTR  242 (392)
T ss_pred             EEeeeccccCCCCccccccCCCCCCCCCCCcceEEEEEEe----cceEEEEecCCCCceeEEeCCcCCCCCCCeEEEEee
Confidence            9999999999999999999888889999999999987643    677777999999999999999999999999999999


Q ss_pred             EEEEEeCCCCCCCCEEEEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEEEEeecHHHHhCCCEEEEeccCCeEE
Q 013277          296 NIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISE  375 (446)
Q Consensus       296 ~l~V~Ip~G~~~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~~ldG~~~  375 (446)
                      +++|.||+|+++|++|+|+|+|++.+++..+|||||+|++++|+.|+|+|+||+++++|+|.||++|++++|+|+||+++
T Consensus       243 ~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~~ldg~i~  322 (392)
T PRK14279        243 TINVRIPPGVEDGQRIRLAGQGEAGLRGAPSGDLYVTVHVRPDKVFGRDGDDLTVTVPVSFTELALGSTLSVPTLDGPVG  322 (392)
T ss_pred             eeEEEeCCCCCCCcEEEEeCCccCCCCCCCCCCEEEEEEEecCCcceeecCcEEEEEEccHHHHcCCceEEEEcCCceEE
Confidence            99999999999999999999999988777889999999999999999999999999999999999999999999999989


Q ss_pred             EEeCCCCCCCcEEEEccCCCCCCCCCCCCCCEEEEEEEEcCCCCCcchHHHHHHHhh
Q 013277          376 LQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRIRYVYSPSLTIIQL  432 (446)
Q Consensus       376 l~i~~~~~~g~~~~l~g~G~P~~~~~~~~GdL~v~~~v~~P~~ls~~~~~~l~~l~~  432 (446)
                      |+||+++++|++++|+|+|||...  ..+|||||+|+|.||+.|+++|+++|++|..
T Consensus       323 v~Ip~g~~~g~~iri~g~G~p~~~--~~~GDL~I~~~v~~P~~Ls~~q~~~l~~~~~  377 (392)
T PRK14279        323 VKVPAGTADGRILRVRGRGVPKRS--GGAGDLLVTVKVAVPPNLDGAAAEALEAYAE  377 (392)
T ss_pred             EEECCCCCCCCEEEECCCCCCCCC--CCCCCEEEEEEEECCCCCCHHHHHHHHHHHh
Confidence            999999999999999999999643  4689999999999999999999999999875

>PRK14281 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=5.9e-78  Score=616.47  Aligned_cols=355  Identities=41%  Similarity=0.728  Sum_probs=305.1

Q ss_pred             CcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhcchhhhhhhhhhccccceeeccC-CC
Q 013277           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVG-GG  153 (446)
Q Consensus        76 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~~~~~-~~  153 (446)
                      ..|||+||||+++|+.+|||+|||+||++||||++++ +.+.++|++|++||++|+||.+|+.||+||+++++.... ++
T Consensus         2 ~~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~~~~~~~~~~   81 (397)
T PRK14281          2 KRDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGVGSSAASGG   81 (397)
T ss_pred             CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccchhhccccccCC
Confidence            4699999999999999999999999999999999974 568899999999999999999999999999987753211 11


Q ss_pred             CCCC---cCCCcCc---cccccCCCCCC-------CCCCCCCCcccccccccccCCceeEeeeeecccccccceeeeecc
Q 013277          154 SSAY---TTNPFDL---FETFFGPSMGG-------FPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELS  220 (446)
Q Consensus       154 ~~~~---~~~~~d~---F~~fFg~~~g~-------~~~~~~~~~~~~~~~~~~~g~di~~~l~ltlee~~~G~~k~~~~~  220 (446)
                      .++|   ..++.|+   |++||+++.+.       |.++++++....++....++.|+++.|.|||||+|+|+++++.++
T Consensus        82 ~~~~~~~~~~~~d~f~~f~~~Fgg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~~  161 (397)
T PRK14281         82 GPGYGGGGGDFNDIFSAFNDMFGGGARRGGGSPFGFEDVFGGGGRRRRASAGIPGTDLKIRLKLTLEEIAKGVEKTLKIK  161 (397)
T ss_pred             CCCCCcCCCCHHHHHHHHHHHhCCCcccccccccccccccCCCcccccccCCCCCCCEEEEEEeEHHHHhCCeEEEEEEE
Confidence            1111   1122233   45778742110       000000000000111124688999999999999999999999999


Q ss_pred             ceeecccccCCccccCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeecCCceEEEEeeEEEEE
Q 013277          221 HLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVK  300 (446)
Q Consensus       221 ~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~  300 (446)
                      +.+.|+.|+|+|.... ...+|+.|+|+|.+....++.+|++++..+|+.|+|+|+++.+.|..|.|.|.+.+.++++|+
T Consensus       162 r~~~C~~C~G~G~~~~-~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~  240 (397)
T PRK14281        162 KQVPCKECNGTGSKTG-ATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVKDRCPACYGEGIKQGEVTVKVT  240 (397)
T ss_pred             eeecCCCCCCcccCCC-CCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeCCCCCCCCCCccEecceEEEEe
Confidence            9999999999999876 578999999999998888889999998899999999999999999999999999999999999


Q ss_pred             eCCCCCCCCEEEEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEEEEeecHHHHhCCCEEEEeccCCeEEEEeCC
Q 013277          301 VPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPP  380 (446)
Q Consensus       301 Ip~G~~~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~~ldG~~~l~i~~  380 (446)
                      ||+|+++|++|+|+|+|++.+.++.+|||||+|++++|+.|+|+|+||+++++|||.|||+|++++|+|+||++.|+||+
T Consensus       241 Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldg~i~v~ip~  320 (397)
T PRK14281        241 VPAGVQDGNYLTLRGQGNAGPRGGAPGDLIVVIEEKPHELFVRNGDDVIYNLAVSYPDLVLGTKVEVPTLDGAVKLTIPA  320 (397)
T ss_pred             cCCCCCCCCEEEEecccccCCCCCCCCcEEEEEEEcCCCCeEEecCCEEEEEEecHHHHhcCCeEEeecCCccEEEEeCC
Confidence            99999999999999999998877789999999999999999999999999999999999999999999999998899999


Q ss_pred             CCCCCcEEEEccCCCCCCCCCCCCCCEEEEEEEEcCCCCCcchHHHHHHHhh
Q 013277          381 GTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRIRYVYSPSLTIIQL  432 (446)
Q Consensus       381 ~~~~g~~~~l~g~G~P~~~~~~~~GdL~v~~~v~~P~~ls~~~~~~l~~l~~  432 (446)
                      ++++|++++|+|+|||..+. ..+|||||+|+|.||+.|+++|+++|++|+.
T Consensus       321 g~~~G~~~ri~g~G~P~~~~-~~~GDL~V~~~V~~P~~Ls~~qk~~l~~l~~  371 (397)
T PRK14281        321 GTQPETMLRIPGKGIGHLRG-SGRGDQYVRVNVFVPKEVSHQDKELLKELKK  371 (397)
T ss_pred             ccCCCcEEEEcCCCCCCCCC-CCCCCEEEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            99999999999999997654 4689999999999999999999999999874

>PRK14282 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.7e-77  Score=608.54  Aligned_cols=350  Identities=42%  Similarity=0.762  Sum_probs=305.7

Q ss_pred             CcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--cchHHHHHHHHHHHhhcchhhhhhhhhhccccceeeccC--
Q 013277           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE--PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVG--  151 (446)
Q Consensus        76 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~--~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~~~~~--  151 (446)
                      .+|||++|||+++|+.+|||+|||+||++||||+|+.  +.+.++|++|++||+||+||.+|+.||+||++++.....  
T Consensus         3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~~~~~~~~~   82 (369)
T PRK14282          3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVGEQPPYQET   82 (369)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCccccccccccC
Confidence            5799999999999999999999999999999999974  468899999999999999999999999999877542110  


Q ss_pred             CCCCCC-cC------CC--cCccccccCCCCCCCCCCCCCCcccccccccccCCceeEeeeeecccccccceeeeeccce
Q 013277          152 GGSSAY-TT------NP--FDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHL  222 (446)
Q Consensus       152 ~~~~~~-~~------~~--~d~F~~fFg~~~g~~~~~~~~~~~~~~~~~~~~g~di~~~l~ltlee~~~G~~k~~~~~~~  222 (446)
                      ++.+++ ..      ++  .|+|++||+++    ++    +  ..++....++.|+++.|.|||+|+|+|+++++.+++.
T Consensus        83 ~~~g~~~~~~~~~~~~~~~~d~f~~~fgg~----~~----~--~~~~~~~~~g~di~~~l~~slee~~~G~~~~i~~~r~  152 (369)
T PRK14282         83 ESGGGFFEDIFKDFENIFNRDIFDIFFGER----RT----Q--EEQREYARRGEDIRYEIEVTLSDLINGAEIPVEYDRY  152 (369)
T ss_pred             CCCCcccccccccccccccchhhhHhhccc----CC----c--ccccCCCCCCCCeEEEEEEEHHHhcCCeEEEEEeeec
Confidence            111111 10      11  14555555421    00    0  0011223568999999999999999999999999999


Q ss_pred             eecccccCCccccCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeecCCceEEEEeeEEEEEeC
Q 013277          223 ETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVP  302 (446)
Q Consensus       223 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip  302 (446)
                      +.|+.|+|+|........+|+.|+|+|.++...++++|++++..+|+.|+|+|+++.+.|..|+|.|.+.+.++++|.||
T Consensus       153 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip  232 (369)
T PRK14282        153 ETCPHCGGTGVEPGSGYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPGEYCHECGGSGRIRRRVRTTVKIP  232 (369)
T ss_pred             ccCCCCCccCCCCCCCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCCCCCCCCCCceeEEEEEEEEEEeC
Confidence            99999999999988888999999999999998899999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCEEEEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEEEEeecHHHHhCCCEEEEeccCCe-EEEEeCCC
Q 013277          303 PGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGI-SELQVPPG  381 (446)
Q Consensus       303 ~G~~~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~~ldG~-~~l~i~~~  381 (446)
                      +|+++|++|+|+|+|++++.++.+|||||+|++++|+.|+|+|+||+++++|||.||++|++++|+|+||+ ++|+||++
T Consensus       233 ~G~~~G~~i~~~g~G~~~~~~~~~GDl~i~i~v~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~i~v~Ip~g  312 (369)
T PRK14282        233 AGVEDGTVLRITGGGNAGYYGGPYGDLYVIVRVRPDPRFKRSGSDLIYDVTIDYLQAILGTTVEVPLPEGGTTMLKIPPG  312 (369)
T ss_pred             CCCCCCCEEEEecccCCCCCCCCCCCEEEEEEEecCCcEEEecCCEEEEEEeCHHHHhCCCEEEEeCCCCcEEEEEeCCC
Confidence            99999999999999999887788999999999999999999999999999999999999999999999997 68999999


Q ss_pred             CCCCcEEEEccCCCCCCCCCCCCCCEEEEEEEEcCCCCCcchHHHHHHHhh-ccch
Q 013277          382 TQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRIRYVYSPSLTIIQL-NSVI  436 (446)
Q Consensus       382 ~~~g~~~~l~g~G~P~~~~~~~~GdL~v~~~v~~P~~ls~~~~~~l~~l~~-~~~~  436 (446)
                      +++|++++|+|+|||..+. ..+|||||+|+|.+|+.|+.+|+++|++|+. .+|.
T Consensus       313 ~~~g~~iri~GkG~p~~~~-~~~GDL~V~~~v~~P~~l~~~~~~ll~~l~~~~~~~  367 (369)
T PRK14282        313 TQPETVFRLKGKGLPNMRY-GRRGDLIVNVHVEIPKRLSREERKLLKELAKKRGVT  367 (369)
T ss_pred             cCCCCEEEECCCCCCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHHhcCCc
Confidence            9999999999999997543 4589999999999999999999999998873 4443

>PRK14285 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.1e-77  Score=608.25  Aligned_cols=342  Identities=33%  Similarity=0.661  Sum_probs=300.5

Q ss_pred             CcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhcchhhhhhhhhhccccceeeccCC-C
Q 013277           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGG-G  153 (446)
Q Consensus        76 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~~~~~~-~  153 (446)
                      .+|||++|||+++||.+|||+|||+||++||||+|+. +.+.++|++|++||+||+||.+|+.||+||+++++.+.+. +
T Consensus         2 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~~~~~~~~~~   81 (365)
T PRK14285          2 KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHTAFEGGGGFEG   81 (365)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcchhccCCCccc
Confidence            4799999999999999999999999999999999974 5688999999999999999999999999999877532110 1


Q ss_pred             -CCCC---c---CCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeEeeeeecccccccceeeeeccceeecc
Q 013277          154 -SSAY---T---TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCE  226 (446)
Q Consensus       154 -~~~~---~---~~~~d~F~~fFg~~~g~~~~~~~~~~~~~~~~~~~~g~di~~~l~ltlee~~~G~~k~~~~~~~~~C~  226 (446)
                       .+++   .   .++.|+|++||++..+        +.   +.....++.|++++|.|||||+|+|+++++.+++.+.|.
T Consensus        82 ~~~g~~~~~~~~~~~~d~f~~~fgg~~~--------~~---~~~~~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~  150 (365)
T PRK14285         82 FSGGFSGFSDIFEDFGDIFDSFFTGNRG--------QD---KNRKHEKGQDLTYQIEISLEDAYLGYKNNINITRNMLCE  150 (365)
T ss_pred             cCCCccccccccccHHHHHHHhhcCCcC--------CC---CCcCCCCCCCEEEEEEEEHHHhhCCeEEEEEeeecccCC
Confidence             0111   1   1234567777653110        00   011134688999999999999999999999999999999


Q ss_pred             cccCCccccCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeecCCceEEEEeeEEEEEeCCCCC
Q 013277          227 VCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVS  306 (446)
Q Consensus       227 ~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~  306 (446)
                      .|+|+|...+....+|+.|+|+|.++.    .+|++++..+|+.|+|+|+++.+.|..|+|.|.+.+.++++|.||+|++
T Consensus       151 ~C~G~G~~~~~~~~~C~~C~G~G~~~~----~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~  226 (365)
T PRK14285        151 SCLGKKSEKGTSPSICNMCNGSGRVMQ----GGGFFRVTTTCPKCYGNGKIISNPCKSCKGKGSLKKKETIELKIPAGID  226 (365)
T ss_pred             CCCCcccCCCCCCccCCCccCceeEEe----cCceeEEeeecCCCCCcccccCCCCCCCCCCCEEeccEEEEEEECCCCC
Confidence            999999998888899999999998765    4588877799999999999999999999999999999999999999999


Q ss_pred             CCCEEEEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEEEEeecHHHHhCCCEEEEeccCCe-EEEEeCCCCCCC
Q 013277          307 TGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGI-SELQVPPGTQPG  385 (446)
Q Consensus       307 ~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~~ldG~-~~l~i~~~~~~g  385 (446)
                      +|++|+|+|+|++.++++.+|||||+|++++|+.|+|+|+||+++++|||.|||+|++++|+|+||+ ++|.||+++++|
T Consensus       227 ~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~dL~~~~~Isl~eAl~G~~~~i~tldG~~v~V~Ip~g~~~g  306 (365)
T PRK14285        227 DNQQIKMRGKGSVNPDNQQYGDLYIKILIKPHKIFKRNGKDLYATLPISFTQAALGKEIKIQTIASKKIKIKIPKGTEND  306 (365)
T ss_pred             CCCEEEEeeccccCCCCCCCCCEEEEEEEecCCCeEEeccceEEEEecCHHHHhCCCEEEEECCCCCEEEEEeCCCcCCC
Confidence            9999999999999887778999999999999999999999999999999999999999999999996 689999999999


Q ss_pred             cEEEEccCCCCCCCCCCCCCCEEEEEEEEcCCCCCcchHHHHHHHhhc
Q 013277          386 DVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRIRYVYSPSLTIIQLN  433 (446)
Q Consensus       386 ~~~~l~g~G~P~~~~~~~~GdL~v~~~v~~P~~ls~~~~~~l~~l~~~  433 (446)
                      ++++|+|+|||..+. ..+|||||+|+|.+|+.|+++|+++|++|+..
T Consensus       307 ~~irl~GkG~p~~~~-~~~GDL~V~~~v~~P~~l~~~q~~~l~~l~~~  353 (365)
T PRK14285        307 EQIIIKNEGMPILHT-EKFGNLILIIKIKTPKNLNSNAIKLLENLSKE  353 (365)
T ss_pred             cEEEECCCCccCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            999999999997654 35799999999999999999999999988743

>PRK14301 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.3e-77  Score=609.30  Aligned_cols=344  Identities=43%  Similarity=0.760  Sum_probs=299.2

Q ss_pred             CcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhcchhhhhhhhhhccccceeeccCCCC
Q 013277           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGS  154 (446)
Q Consensus        76 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~~~~~~~~  154 (446)
                      ..|||++|||+++|+.+|||+|||+||++||||++++ +.++++|++|++||+||+||.+|+.||+||+++++++.  +.
T Consensus         3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g~~~~~--~~   80 (373)
T PRK14301          3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGVNGNG--GF   80 (373)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhccccccccCC--CC
Confidence            5799999999999999999999999999999999974 56789999999999999999999999999998775321  11


Q ss_pred             CCCc--CCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeEeeeeecccccccceeeeeccceeecccccCCc
Q 013277          155 SAYT--TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTG  232 (446)
Q Consensus       155 ~~~~--~~~~d~F~~fFg~~~g~~~~~~~~~~~~~~~~~~~~g~di~~~l~ltlee~~~G~~k~~~~~~~~~C~~C~G~G  232 (446)
                      ++|.  .++++.|+++|+..||+ ++.+  +   .+.....++.|++++|.|||+|+|+|+++++.+++.+.|+.|+|+|
T Consensus        81 ~g~~~~~~~~~~f~d~f~~~fg~-g~~~--~---~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G  154 (373)
T PRK14301         81 GGFSSAEDIFSHFSDIFGDLFGF-SGGG--S---RRGPRPQAGSDLRYNLTVSFRQAAKGDEVTLRIPKNVTCDDCGGSG  154 (373)
T ss_pred             CCcccccccccchHHHHHHHhhc-cCcc--c---ccCCCCCCCCCEEEEEeccHHHHhCCceEEEEeeecccCCCCCCcc
Confidence            1221  12232333334322210 0000  0   0111235788999999999999999999999999999999999999


Q ss_pred             cccCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeecCCceEEEEeeEEEEEeCCCCCCCCEEE
Q 013277          233 AKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILR  312 (446)
Q Consensus       233 ~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i~  312 (446)
                      ........+|+.|+|+|.+...    .|++++..+|+.|+|+|+++.+.|..|+|.|.+.+.++++|.||+|+++|++|+
T Consensus       155 ~~~~~~~~~C~~C~G~G~v~~~----~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~  230 (373)
T PRK14301        155 AAPGTSPETCRHCGGSGQVRQS----QGFFQIAVPCPVCRGEGRVITHPCPKCKGSGIVQQTRELKVRIPAGVDTGSRLR  230 (373)
T ss_pred             cCCCCCCcccCCccCeeEEEEE----eeeEEEEEeCCCCCceeeecCCCCCCCCCCceeccceEEEEEeCCCCcCCCEEE
Confidence            9988888899999999998653    378888899999999999999999999999999999999999999999999999


Q ss_pred             EccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEEEEeecHHHHhCCCEEEEeccCCeEEEEeCCCCCCCcEEEEcc
Q 013277          313 VVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLAK  392 (446)
Q Consensus       313 l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~~ldG~~~l~i~~~~~~g~~~~l~g  392 (446)
                      |+|+|++.+.++.+|||||+|+|++|+.|+|+|+||+++++|+|.|||+|++++|+|+||+++|+||+++++|++++|+|
T Consensus       231 ~~g~G~~~~~~~~~GDLiv~i~v~~h~~f~r~G~DL~~~~~Isl~eAl~G~~~~v~tldG~i~v~ip~g~~~g~~~ri~g  310 (373)
T PRK14301        231 LRGEGEPGVHGGPPGDLYVVITVEDDKIFQRQGQDLVVTQEISFVQAALGDRIEVPTLDDPVTLDIPKGTQSGEVFRLRG  310 (373)
T ss_pred             EeccccCCCCCCCCcCEEEEEEEEECCCceeecCcEEEEEEecHHHHhCCCeEEEecCCccEEEEECCCcCCCcEEEEcC
Confidence            99999998777789999999999999999999999999999999999999999999999998999999999999999999


Q ss_pred             CCCCCCCCCCCCCCEEEEEEEEcCCCCCcchHHHHHHHhh
Q 013277          393 KGAPKLNKPSIRGDHLFTVKVTIPNRIRYVYSPSLTIIQL  432 (446)
Q Consensus       393 ~G~P~~~~~~~~GdL~v~~~v~~P~~ls~~~~~~l~~l~~  432 (446)
                      +|||..+. ..+|||||+|+|.||+.|+++|+++|++|..
T Consensus       311 ~G~p~~~~-~~~GDL~I~~~V~~P~~l~~~q~~~l~~l~~  349 (373)
T PRK14301        311 KGLPYLGS-SQKGDLLVEVSVVTPTKLTKRQEELLREFEA  349 (373)
T ss_pred             CCCCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHh
Confidence            99998654 4589999999999999999999999999874

>PRK14295 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=3.7e-77  Score=608.65  Aligned_cols=352  Identities=41%  Similarity=0.725  Sum_probs=298.5

Q ss_pred             cCcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhcchhhhhhhhhh----ccccceeec
Q 013277           75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQ----YGEAGVKST  149 (446)
Q Consensus        75 ~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~~r~~yd~----~g~~~~~~~  149 (446)
                      +..|||+||||+++|+.+|||+|||+||++||||+|+. +.++++|++|++||+||+||.+|+.||+    ||+++++.+
T Consensus         7 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~g~~~~   86 (389)
T PRK14295          7 IEKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNGGFRPG   86 (389)
T ss_pred             cccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhcccccccC
Confidence            46799999999999999999999999999999999974 5688999999999999999999999999    998877532


Q ss_pred             cC-CCCCCCcCCCcCccccccCCC-CCCC----CCCCCCCccc-ccccccccCCceeEeeeeecccccccceeeeeccce
Q 013277          150 VG-GGSSAYTTNPFDLFETFFGPS-MGGF----PGMNQTGFRT-RRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHL  222 (446)
Q Consensus       150 ~~-~~~~~~~~~~~d~F~~fFg~~-~g~~----~~~~~~~~~~-~~~~~~~~g~di~~~l~ltlee~~~G~~k~~~~~~~  222 (446)
                      .+ ++.++|..++.++|..+++.+ ++++    ..+++..|+. .+.....++.|++++|.|||||+|+|+++++.+++.
T Consensus        87 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~f~d~f~~~fg~~~~~~~~~~g~di~~~l~lsLee~~~G~~k~i~~~r~  166 (389)
T PRK14295         87 PGGGGGGGFNFDLGDLFGGGAQGGGGAGGGGGLGDVFGGLFNRGGRRTQPRRGADVESEVTLSFTEAIDGATVPLRLTSQ  166 (389)
T ss_pred             CCCCCCCCCCcccccccccccccccccccccchhhhhcccccCCCCCCCCCCCCCEEEEEEEEHHHHhCCceEEEEeecc
Confidence            11 111223233344443321110 0000    0000000110 011223468899999999999999999999999999


Q ss_pred             eecccccCCccccCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeecCCceEEEEeeEEEEEeC
Q 013277          223 ETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVP  302 (446)
Q Consensus       223 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip  302 (446)
                      +.|+.|+|+|........+|+.|+|+|.++...    |+|++..+|+.|+|+|+++.+.|..|.|.|.+.+.++++|.||
T Consensus       167 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip  242 (389)
T PRK14295        167 APCPACSGTGAKNGTTPRVCPTCSGTGQVSRNS----GGFSLSEPCPDCKGRGLIADDPCLVCKGSGRAKSSRTMQVRIP  242 (389)
T ss_pred             ccCCCCcccccCCCCCCcCCCCCCCEeEEEEEe----cceEEEEecCCCcceeEEeccCCCCCCCCceEeeeeEEEEEeC
Confidence            999999999999888889999999999987643    5667778999999999999999999999999999999999999


Q ss_pred             CCCCCCCEEEEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEEEEeecHHHHhCCCEEEEeccCC-eEEEEeCCC
Q 013277          303 PGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEG-ISELQVPPG  381 (446)
Q Consensus       303 ~G~~~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~~ldG-~~~l~i~~~  381 (446)
                      +|+++|++|+|+|+|++.+.+..+|||||+|++++|+.|+|+|+||+++++|||.|||+|++++|+|+|| .++|+||++
T Consensus       243 ~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~tldG~~~~v~ip~g  322 (389)
T PRK14295        243 AGVSDGQRIRLRGKGAPGERGGPAGDLYVVVHVDPHPVFGRSGDNLTVTVPVTFPEAALGAEVRVPTLGGPPVTVKLPPG  322 (389)
T ss_pred             CCCCCCCEEEEcccccCCCCCCCCccEEEEEEEecCCCEEEecCCEEEEEeecHHHHhCCCeEEEECCCCCEEEEEECCc
Confidence            9999999999999999987777899999999999999999999999999999999999999999999999 578999999


Q ss_pred             CCCCcEEEEccCCCCCCCCCCCCCCEEEEEEEEcCCCCCcchHHHHHHHhh
Q 013277          382 TQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRIRYVYSPSLTIIQL  432 (446)
Q Consensus       382 ~~~g~~~~l~g~G~P~~~~~~~~GdL~v~~~v~~P~~ls~~~~~~l~~l~~  432 (446)
                      +++|++++|+|+|||..+  +.+|||||+|+|.||+.|+++|+++|++|..
T Consensus       323 ~~~g~~iri~G~G~p~~~--~~~GDL~i~~~v~~P~~Ls~~qk~~l~~l~~  371 (389)
T PRK14295        323 TPNGRVLRVRGKGAVRKD--GTRGDLLVTVEVAVPKDLSGKAREALEAFRE  371 (389)
T ss_pred             cCCCcEEEECCCCcCCCC--CCCCCEEEEEEEECCCCCCHHHHHHHHHHHh
Confidence            999999999999999743  4589999999999999999999999999875

>PRK14294 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=4.4e-77  Score=604.83  Aligned_cols=343  Identities=48%  Similarity=0.849  Sum_probs=301.3

Q ss_pred             CcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhcchhhhhhhhhhccccceeeccCCCC
Q 013277           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGS  154 (446)
Q Consensus        76 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~~~~~~~~  154 (446)
                      .+|||+||||+++|+.+|||+|||+||++||||+++. +.+.++|++|++||+||+||.+|+.||+||+++++.+..++.
T Consensus         3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g~~~~~~~~~   82 (366)
T PRK14294          3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGLSGTGFSGF   82 (366)
T ss_pred             CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhccccccCCCCCCc
Confidence            4799999999999999999999999999999999984 678899999999999999999999999999988753211111


Q ss_pred             CCCc---CCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeEeeeeecccccccceeeeeccceeecccccCC
Q 013277          155 SAYT---TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGT  231 (446)
Q Consensus       155 ~~~~---~~~~d~F~~fFg~~~g~~~~~~~~~~~~~~~~~~~~g~di~~~l~ltlee~~~G~~k~~~~~~~~~C~~C~G~  231 (446)
                      ++|.   .++.|+|++||+.  ++..+       .+......++.|++++|.|+|||+|+|+++++.+++.+.|..|+|+
T Consensus        83 ~~~~~~~~~~~d~f~~~fg~--g~~~~-------~~~~~~~~~g~d~~~~l~lslee~~~G~~~~i~~~r~~~C~~C~G~  153 (366)
T PRK14294         83 SGFDDIFSSFGDIFEDFFGF--GGGRR-------GRSRTAVRAGADLRYDLTLPFLEAAFGTEKEIRIQKLETCEECHGS  153 (366)
T ss_pred             CccccchhhhhhhHHHhhcc--CCCcC-------CcccCCCCCCCCceEEEEeeHHHhcCCeEEEEEeeecccCCCCCCc
Confidence            1221   1233667777751  11000       0011123468899999999999999999999999999999999999


Q ss_pred             ccccCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeecCCceEEEEeeEEEEEeCCCCCCCCEE
Q 013277          232 GAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSIL  311 (446)
Q Consensus       232 G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i  311 (446)
                      |........+|+.|+|+|.++..    .|++++..+|+.|+|+|+.+.+.|..|+|.|.+.+.++++|.||+|+++|++|
T Consensus       154 G~~~~~~~~~C~~C~G~G~~~~~----~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i  229 (366)
T PRK14294        154 GCEPGTSPTTCPQCGGSGQVTQS----QGFFSIRTTCPRCRGMGKVIVSPCKTCHGQGRVRVSKTVQVKIPAGVDTGSRL  229 (366)
T ss_pred             cccCCCCcccCCCcCCeEEEEEE----eeeEEEEeeCCCCCCcCeecCcCCCCCCCceEeecceeEEEecCCCCcCCcEE
Confidence            99988888999999999988653    37888789999999999999999999999999999999999999999999999


Q ss_pred             EEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEEEEeecHHHHhCCCEEEEeccCCeEEEEeCCCCCCCcEEEEc
Q 013277          312 RVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLA  391 (446)
Q Consensus       312 ~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~~ldG~~~l~i~~~~~~g~~~~l~  391 (446)
                      +|+|+|++.+.++.+|||||+|++++|+.|+|+|+||++++.|||.|||+|++++|+|+||+++|.||+++++|++++|+
T Consensus       230 ~~~g~G~~~~~~~~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~~v~ip~g~~~g~~iri~  309 (366)
T PRK14294        230 RLRGEGEAGVRGGPPGDLYVFLTVEPHEFFERDGNDVHCKVPISFVQAALGAQIEVPTLEGERELKIPKGTQPGDIFRFK  309 (366)
T ss_pred             EEccCccCCCCCCCCCcEEEEEEEccCCcceecCCCEEEEEEeCHHHHhCCCeEEEECCCCcEEEEECCCcCCCCEEEEC
Confidence            99999999877788999999999999999999999999999999999999999999999999899999999999999999


Q ss_pred             cCCCCCCCCCCCCCCEEEEEEEEcCCCCCcchHHHHHHHhh
Q 013277          392 KKGAPKLNKPSIRGDHLFTVKVTIPNRIRYVYSPSLTIIQL  432 (446)
Q Consensus       392 g~G~P~~~~~~~~GdL~v~~~v~~P~~ls~~~~~~l~~l~~  432 (446)
                      |+|||..+. ..+|||||+|+|.+|+.|+.+|+++|++|..
T Consensus       310 G~G~p~~~~-~~~GDL~V~~~v~~P~~l~~~q~~ll~~~~~  349 (366)
T PRK14294        310 GKGIPSLRG-GGRGDQIIEVEVKVPTRLTKKQEELLTEFAR  349 (366)
T ss_pred             CCCCCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHH
Confidence            999997654 3589999999999999999999999999874

>PRK14284 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=6.4e-77  Score=608.11  Aligned_cols=344  Identities=40%  Similarity=0.736  Sum_probs=297.1

Q ss_pred             cCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhcchhhhhhhhhhccccceeeccCC-CC
Q 013277           77 GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGG-GS  154 (446)
Q Consensus        77 ~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~~~~~~-~~  154 (446)
                      .|||+||||+++|+++|||+|||+||++||||+|++ +.+.++|++|++||++|+||.+|+.||+||++++..+.++ +.
T Consensus         1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~g~~~~~~   80 (391)
T PRK14284          1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDGPFAGAGGFGG   80 (391)
T ss_pred             CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhccccccccccCCcCC
Confidence            389999999999999999999999999999999984 5788999999999999999999999999998876422110 00


Q ss_pred             CCCc--CC---------------CcCccccccCCCCCCCCCCCCCCcccccccccccCCceeEeeeeecccccccceeee
Q 013277          155 SAYT--TN---------------PFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEF  217 (446)
Q Consensus       155 ~~~~--~~---------------~~d~F~~fFg~~~g~~~~~~~~~~~~~~~~~~~~g~di~~~l~ltlee~~~G~~k~~  217 (446)
                      +++.  .+               +.|+|++||++..++|++       ........++.|++++|.|||||+|+|+++++
T Consensus        81 ~g~~~~~~~~~~~~~~f~~~~~~~~d~f~~~fgg~g~~~~~-------~~~~~~~~~g~d~~~~l~vslee~~~G~~~~i  153 (391)
T PRK14284         81 AGMGNMEDALRTFMGAFGGEFGGGGSFFEGLFGGLGEAFGM-------RGGPAGARQGASKKVHITLSFEEAAKGVEKEL  153 (391)
T ss_pred             CCcCcccchhhhccccccccccccccchhhhccCccccccc-------cccCCCcCCCCCeEEEEEEEHHHHhCCeeEEE
Confidence            1110  00               124455555421000110       00011234688999999999999999999999


Q ss_pred             eccceeecccccCCccccCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeecCCceEEEEeeEE
Q 013277          218 ELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNI  297 (446)
Q Consensus       218 ~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l  297 (446)
                      .+++.+.|+.|+|+|........+|+.|+|+|.++...    |++++..+|+.|+|+|+++.+.|..|.|.|.+.+.+++
T Consensus       154 ~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~----G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l  229 (391)
T PRK14284        154 LVSGYKSCDACSGSGANSSQGIKVCDRCKGSGQVVQSR----GFFSMASTCPECGGEGRVITDPCSVCRGQGRIKDKRSV  229 (391)
T ss_pred             EEeeeccCCCCcccccCCCCCCeecCccCCeeEEEEEe----ceEEEEEECCCCCCCCcccCCcCCCCCCcceecceEEE
Confidence            99999999999999999888889999999999887543    77888899999999999999999999999999999999


Q ss_pred             EEEeCCCCCCCCEEEEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEEEEeecHHHHhCCCEEEEeccC--CeEE
Q 013277          298 KVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVE--GISE  375 (446)
Q Consensus       298 ~V~Ip~G~~~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~~ld--G~~~  375 (446)
                      +|.||||+++|++|+|+|+|+++++++.+|||||+|++++|+.|+|+|+||+++++|||.||++|++++|+|+|  +.++
T Consensus       230 ~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tld~g~~i~  309 (391)
T PRK14284        230 HVHIPAGVDSGMRLKMEGYGDAGQNGAPAGDLYVFIDVEPHPVFERRGDDLILELPIGFVDAALGMKKEIPTLLKEGTCR  309 (391)
T ss_pred             EEEECCCCCCCCEEEEeccccCCCCCCCCCCEEEEEEEecCCCceeecCCEEEEEEecHHHHhCCCeEEEeecCCCcEEE
Confidence            99999999999999999999999888889999999999999999999999999999999999999999999999  5678


Q ss_pred             EEeCCCCCCCcEEEEccCCCCCCCCCCCCCCEEEEEEEEcCCCCCcchHHHHHHHhh
Q 013277          376 LQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRIRYVYSPSLTIIQL  432 (446)
Q Consensus       376 l~i~~~~~~g~~~~l~g~G~P~~~~~~~~GdL~v~~~v~~P~~ls~~~~~~l~~l~~  432 (446)
                      |+||+++++|++++|+|+|||..++ ..+|||||+|+|.+|+.|+++|+++|++|..
T Consensus       310 v~Ip~g~~~g~~~~i~g~G~p~~~~-~~~GDL~V~~~v~~P~~l~~~q~~ll~~l~~  365 (391)
T PRK14284        310 LTIPEGIQSGTILKVRGQGFPNVHG-KGRGDLLVRISVETPQNLSEEQKELLRQFAA  365 (391)
T ss_pred             EEECCccCCCeEEEECCCCCCCCCC-CCCCcEEEEEEEECCCCCCHHHHHHHHHHHh
Confidence            9999999999999999999998654 3589999999999999999999999999873

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=100.00  E-value=8.6e-77  Score=601.43  Aligned_cols=346  Identities=51%  Similarity=0.893  Sum_probs=308.1

Q ss_pred             CchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhhhhccccceeeccCCCCCCC
Q 013277           78 DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGSSAY  157 (446)
Q Consensus        78 d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~~~~~~~~~~~  157 (446)
                      |||++|||+++|+.+|||+|||+||++||||+++++.+.++|++|++||++|+|+.+|+.||+||+++++.+.++..+.|
T Consensus         1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~~~~~~   80 (354)
T TIGR02349         1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGFNGGGGGGGGGF   80 (354)
T ss_pred             ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHHHhhhhcccccccccCcCCCCCc
Confidence            79999999999999999999999999999999987788999999999999999999999999999987753211101111


Q ss_pred             ---c----CCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeEeeeeecccccccceeeeeccceeecccccC
Q 013277          158 ---T----TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTG  230 (446)
Q Consensus       158 ---~----~~~~d~F~~fFg~~~g~~~~~~~~~~~~~~~~~~~~g~di~~~l~ltlee~~~G~~k~~~~~~~~~C~~C~G  230 (446)
                         .    .++.++|++||++.+++       +  ..+.....++.|++++|.|||+|+|+|+++++.+++.+.|+.|+|
T Consensus        81 ~~~~~~~~~~~~~~f~~~fg~~~g~-------~--~~~~~~~~~~~d~~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G  151 (354)
T TIGR02349        81 NGFDIGFFGDFGDIFGDFFGGGGGS-------G--RRRRSGPRRGEDLRYDLELTFEEAVFGVEKEIEIPRKESCETCHG  151 (354)
T ss_pred             CCccccCcCchhhhHHHHhccCccc-------C--ccccCCCCCCCCeEEEEEEEHHHHhCCeeEEEEeecCCcCCCCCC
Confidence               1    13346777777632110       0  001122357889999999999999999999999999999999999


Q ss_pred             CccccCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeecCCceEEEEeeEEEEEeCCCCCCCCE
Q 013277          231 TGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSI  310 (446)
Q Consensus       231 ~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~  310 (446)
                      +|........+|+.|+|+|.++...++++|++++..+|+.|+|+|+.+.+.|..|.|.|.+.+.+.++|.||+|+++|++
T Consensus       152 ~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~  231 (354)
T TIGR02349       152 TGAKPGTDPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIKEPCSTCKGKGRVKERKTITVKIPAGVDTGQR  231 (354)
T ss_pred             CCCCCCCCCccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecCCCCCCCCCCcEecccceEEEEECCCCCCCCE
Confidence            99988888899999999999999889999999998999999999999999999999999999999999999999999999


Q ss_pred             EEEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEEEEeecHHHHhCCCEEEEeccCCeEEEEeCCCCCCCcEEEE
Q 013277          311 LRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVL  390 (446)
Q Consensus       311 i~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~~ldG~~~l~i~~~~~~g~~~~l  390 (446)
                      |+|+|+|++...+..+|||||+|++++|+.|+|+|+||++++.|+|.|||+|+++.|+|+||.++|.||+++++|++++|
T Consensus       232 i~~~g~G~~~~~~~~~GDl~v~i~v~~h~~f~r~g~DL~~~~~isl~eAl~G~~~~i~~ldG~i~v~ip~g~~~g~~~~i  311 (354)
T TIGR02349       232 LRVSGKGNAGENGGPNGDLYVVIRVKPHKIFERDGNDLYIEVPISFTQAILGGEIEVPTLDGDVKLKIPAGTQSGTVFRL  311 (354)
T ss_pred             EEEecCccCCCCCCCCCCEEEEEEEecCcceEEecCCEEEEEEeCHHHHhCCCeEEEecCCceEEEEECCcccCCcEEEE
Confidence            99999999977677899999999999999999999999999999999999999999999999889999999999999999


Q ss_pred             ccCCCCCCCCCCCCCCEEEEEEEEcCCCCCcchHHHHHHHhhc
Q 013277          391 AKKGAPKLNKPSIRGDHLFTVKVTIPNRIRYVYSPSLTIIQLN  433 (446)
Q Consensus       391 ~g~G~P~~~~~~~~GdL~v~~~v~~P~~ls~~~~~~l~~l~~~  433 (446)
                      +|+|||..+. ..+|||||+|+|.||+.|+.+|+++|++|+..
T Consensus       312 ~g~G~p~~~~-~~~GDL~i~~~v~~P~~l~~~~~~~l~~~~~~  353 (354)
T TIGR02349       312 KGKGVPRLRG-NGRGDLLVTVKVETPKNLSKEQKELLEELAEA  353 (354)
T ss_pred             CCCCcCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            9999997654 36899999999999999999999999998754

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14300 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=3.3e-76  Score=599.18  Aligned_cols=345  Identities=38%  Similarity=0.728  Sum_probs=302.6

Q ss_pred             CcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhhhhccccceeecc--C--
Q 013277           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTV--G--  151 (446)
Q Consensus        76 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~~~~--~--  151 (446)
                      ..|||+||||+++||.+|||+|||+||++||||+++++.++++|++|++||++|+|+.+|+.||+||+++++...  +  
T Consensus         2 ~~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~~~~   81 (372)
T PRK14300          2 SQDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDAFQNQQSRGGG   81 (372)
T ss_pred             CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhhHHHhccccccccccccCCC
Confidence            469999999999999999999999999999999998778899999999999999999999999999988765321  1  


Q ss_pred             CCCCCCcCCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeEeeeeecccccccceeeeeccceeecccccCC
Q 013277          152 GGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGT  231 (446)
Q Consensus       152 ~~~~~~~~~~~d~F~~fFg~~~g~~~~~~~~~~~~~~~~~~~~g~di~~~l~ltlee~~~G~~k~~~~~~~~~C~~C~G~  231 (446)
                      ++.+++..++.++|++||+..+|+.+     ..  .......++.|+++.|.|+|+|+|+|+++++.+++.+.|+.|+|+
T Consensus        82 g~~~~~~~~~~~~f~~~f~~~~gg~~-----~~--~~~~~~~~g~di~~~l~~sLee~~~G~~k~i~~~r~~~C~~C~G~  154 (372)
T PRK14300         82 GNHGGFHPDINDIFGDFFSDFMGGSR-----RS--RPTSSKVRGSDLKYNLTINLEEAFHGIEKNISFSSEVKCDTCHGS  154 (372)
T ss_pred             CCCCccccchhhhHHHHHHhhcCCCC-----CC--CCCcCCCCCCCeeEEEEEEHHHHhCCceEEEEeeeccccCCCCCc
Confidence            11122222344667777764332210     00  000112468899999999999999999999999999999999999


Q ss_pred             ccccCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeecCCceEEEEeeEEEEEeCCCCCCCCEE
Q 013277          232 GAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSIL  311 (446)
Q Consensus       232 G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i  311 (446)
                      |........+|+.|+|+|.++..    .|++++..+|+.|+|+|+++.+.|..|+|.|.+.+.++++|.||+|+++|++|
T Consensus       155 g~~~~~~~~~C~~C~G~G~~~~~----~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i  230 (372)
T PRK14300        155 GSEKGETVTTCDACSGVGATRMQ----QGFFTIEQACHKCQGNGQIIKNPCKKCHGMGRYHKQRNLSVNIPAGVENGTRI  230 (372)
T ss_pred             ccCCCCCCccCCCccCeEEEEEe----eceEEEEEeCCCCCccceEeCCCCCCCCCceEEEeeEEEEEEECCCCCCCcEE
Confidence            99988888999999999988653    48888789999999999999999999999999999999999999999999999


Q ss_pred             EEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEEEEeecHHHHhCCCEEEEeccCC-eEEEEeCCCCCCCcEEEE
Q 013277          312 RVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEG-ISELQVPPGTQPGDVLVL  390 (446)
Q Consensus       312 ~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~~ldG-~~~l~i~~~~~~g~~~~l  390 (446)
                      +++|+|++...++.+|||||+|++++|+.|+|+|+||++++.|+|.||++|+++.|+|+|| .++|+||+++++|++++|
T Consensus       231 ~l~g~G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~Dl~~~~~Isl~~Al~G~~~~i~~ldg~~i~v~Ip~g~~~g~~iri  310 (372)
T PRK14300        231 RHTGEGEAGIRGGNSGDLYVDIAIKPHDIYKVDGANLHCKLPISFVNAALGGEIEVPVIEGGKVNLTIPAGTQNGDQLRL  310 (372)
T ss_pred             EEeccccCCCCCCCCCCEEEEEEECCCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCCCEEEEEECCccCCCcEEEE
Confidence            9999999987778899999999999999999999999999999999999999999999998 578999999999999999


Q ss_pred             ccCCCCCCCCCCCCCCEEEEEEEEcCCCCCcchHHHHHHHhh
Q 013277          391 AKKGAPKLNKPSIRGDHLFTVKVTIPNRIRYVYSPSLTIIQL  432 (446)
Q Consensus       391 ~g~G~P~~~~~~~~GdL~v~~~v~~P~~ls~~~~~~l~~l~~  432 (446)
                      +|+|||..++ ..+|||||+|+|.||++||++|+++|++|+.
T Consensus       311 ~g~G~p~~~~-~~~GDL~V~~~v~~P~~ls~~qk~~l~~l~~  351 (372)
T PRK14300        311 RSKGMSKMRS-TIRGDMLTHIHVEVPKNLSKRQRELLEEFKK  351 (372)
T ss_pred             CCCCCCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHh
Confidence            9999997653 3689999999999999999999999999873

>PRK10767 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=7.5e-76  Score=597.51  Aligned_cols=344  Identities=44%  Similarity=0.776  Sum_probs=299.3

Q ss_pred             cCcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhcchhhhhhhhhhccccceeeccC-C
Q 013277           75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVG-G  152 (446)
Q Consensus        75 ~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~~~~~-~  152 (446)
                      +..|||++|||+++|+.+|||+|||+||++||||+|++ +.+.++|++|++||++|+||.+|+.||+||++++..+.+ +
T Consensus         2 ~~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~~~~~~~~   81 (371)
T PRK10767          2 AKRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAFEQGGGGG   81 (371)
T ss_pred             CCCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhccccccccCCCCC
Confidence            35799999999999999999999999999999999974 568899999999999999999999999999887753211 1


Q ss_pred             CCCCCcCCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeEeeeeecccccccceeeeeccceeecccccCCc
Q 013277          153 GSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTG  232 (446)
Q Consensus       153 ~~~~~~~~~~d~F~~fFg~~~g~~~~~~~~~~~~~~~~~~~~g~di~~~l~ltlee~~~G~~k~~~~~~~~~C~~C~G~G  232 (446)
                      +.+++ .++.|+|++||+..||+.+     +  . ++....++.|++++|.|||||+|+|+++++.+++.+.|+.|+|+|
T Consensus        82 ~~~~~-~~~~~~f~~~f~~~fgg~~-----~--~-~~~~~~~g~di~~~l~vsLee~~~G~~~~v~~~r~~~C~~C~G~G  152 (371)
T PRK10767         82 GFGGG-GGFGDIFGDIFGDIFGGGR-----G--G-GRQRARRGADLRYNMEITLEEAVRGVTKEIRIPTLVTCDTCHGSG  152 (371)
T ss_pred             CCCCc-cccccchhhhhhhhccCCc-----c--c-cCCCCCCCCCeEEEEEeehHHhhCCeeEEEeeeecccCCCCCCcc
Confidence            11111 1122344455543322100     0  0 011235788999999999999999999999999999999999999


Q ss_pred             cccCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeecCCceEEEEeeEEEEEeCCCCCCCCEEE
Q 013277          233 AKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILR  312 (446)
Q Consensus       233 ~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i~  312 (446)
                      .........|+.|+|+|.++...    |++++..+|+.|+|+|+.+.+.|..|.|.|.+.+.+.++|.||+|+++|++|+
T Consensus       153 ~~~~~~~~~C~~C~G~G~~~~~~----g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~  228 (371)
T PRK10767        153 AKPGTSPKTCPTCHGAGQVRMQQ----GFFTVQQTCPTCHGRGKIIKDPCKKCHGQGRVEKEKTLSVKIPAGVDTGDRIR  228 (371)
T ss_pred             cCCCCCCccCCCCCCeeEEEEee----ceEEEEEeCCCCCCceeECCCCCCCCCCCceEeeeeeEEEecCCCCCCCcEEE
Confidence            99888888999999999876543    77777789999999999999999999999999999999999999999999999


Q ss_pred             EccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEEEEeecHHHHhCCCEEEEeccCCeEEEEeCCCCCCCcEEEEcc
Q 013277          313 VVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLAK  392 (446)
Q Consensus       313 l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~~ldG~~~l~i~~~~~~g~~~~l~g  392 (446)
                      |+|+|++...++.+|||||+|++++|+.|+|+|+||++++.|+|.|||+|++++|+|+||.++|+||+++++|++++|+|
T Consensus       229 ~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~i~v~ip~g~~~g~~~~i~g  308 (371)
T PRK10767        229 LSGEGEAGERGGPAGDLYVQIHVKEHPIFERDGNDLYCEVPISFTTAALGGEIEVPTLDGRVKLKIPEGTQTGKLFRLRG  308 (371)
T ss_pred             EecCccCCCCCCCCcCEEEEEEEeeCCCEEEecCCEEEEEEeCHHHHhCCCeEEEecCCCcEEEEeCCCCCCCCEEEECC
Confidence            99999997777789999999999999999999999999999999999999999999999988999999999999999999


Q ss_pred             CCCCCCCCCCCCCCEEEEEEEEcCCCCCcchHHHHHHHhh
Q 013277          393 KGAPKLNKPSIRGDHLFTVKVTIPNRIRYVYSPSLTIIQL  432 (446)
Q Consensus       393 ~G~P~~~~~~~~GdL~v~~~v~~P~~ls~~~~~~l~~l~~  432 (446)
                      +|||..+. ..+|||||+|+|.||+.|+++|+++|++|+.
T Consensus       309 ~G~p~~~~-~~~GDL~v~~~v~~P~~l~~~~~~ll~~l~~  347 (371)
T PRK10767        309 KGVKSVRS-GARGDLYCQVVVETPVNLTKRQKELLEEFEE  347 (371)
T ss_pred             CCcCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHh
Confidence            99997654 4689999999999999999999999999875

>PRK14283 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=9.3e-76  Score=597.50  Aligned_cols=351  Identities=42%  Similarity=0.756  Sum_probs=303.1

Q ss_pred             cCcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhhhhccccceeeccCCCC
Q 013277           75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGS  154 (446)
Q Consensus        75 ~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~~~~~~~~  154 (446)
                      ...|||++|||+++|+.+|||+|||+||++||||+|+++.+.++|++|++||++|+||.+|+.||+||+++++.. +. .
T Consensus         3 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g~~~~-~~-~   80 (378)
T PRK14283          3 EKRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAGMDGF-SQ-E   80 (378)
T ss_pred             CcCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHHHHhhhcccccccc-cc-c
Confidence            367999999999999999999999999999999999888899999999999999999999999999998876421 10 0


Q ss_pred             CCCc-CCCcCccccccCCCCCC-CCCCCCCCcccccccccccCCceeEeeeeecccccccceeeeeccceeecccccCCc
Q 013277          155 SAYT-TNPFDLFETFFGPSMGG-FPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTG  232 (446)
Q Consensus       155 ~~~~-~~~~d~F~~fFg~~~g~-~~~~~~~~~~~~~~~~~~~g~di~~~l~ltlee~~~G~~k~~~~~~~~~C~~C~G~G  232 (446)
                      +.|. .++.++|..|+++ ++. |..+   +|++.......++.|+.++|.|+|+|+|+|+++++.+++.+.|+.|+|+|
T Consensus        81 ~~~~~~~~~~~~~~~~~~-~~~~f~~~---~fgg~~~~~~~kg~di~~~l~vsLed~~~G~~~~i~~~r~~~C~~C~G~G  156 (378)
T PRK14283         81 DIFNNINFEDIFQGFGFG-IGNIFDMF---GFGGGSRHGPQRGADIYTEVEITLEEAASGVEKDIKVRHTKKCPVCNGSR  156 (378)
T ss_pred             ccccccCccccccccccc-hhhhcccc---ccCCCCCCCccCCCCeEEEeeeeHHHHhCCcceEEEeeeeccCCCCCccc
Confidence            1111 1112223222210 000 0000   00000011134688999999999999999999999999999999999999


Q ss_pred             cccCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeecCCceEEEEeeEEEEEeCCCCCCCCEEE
Q 013277          233 AKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILR  312 (446)
Q Consensus       233 ~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i~  312 (446)
                      ........+|+.|+|+|.++...++.+|++++..+|+.|+|+|+.+.+.|..|+|.|.+.+.++++|.||+|+++|++|+
T Consensus       157 ~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~i~  236 (378)
T PRK14283        157 AEPGSEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVEKPCSNCHGKGVVRETKTISVKIPAGVETGSRLR  236 (378)
T ss_pred             cCCCCCCccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceecCCCCCCCCCceeeccceeEEEEECCCCCCCcEEE
Confidence            99888889999999999999888899999988899999999999999999999999999999999999999999999999


Q ss_pred             EccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEEEEeecHHHHhCCCEEEEeccCCeEEEEeCCCCCCCcEEEEcc
Q 013277          313 VVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLAK  392 (446)
Q Consensus       313 l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~~ldG~~~l~i~~~~~~g~~~~l~g  392 (446)
                      |+|+|++.+.++.+|||||+|+|++|+.|+|+|+||++++.|+|.||++|+++.|+|+||.+.|+||+++++|++++|+|
T Consensus       237 l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~r~G~DL~~~~~Isl~eAl~G~~~~i~tldG~i~v~ip~g~~~g~~~ri~g  316 (378)
T PRK14283        237 VSGEGEMGDRGGEPGDLYVVIKVKPHKIFRREGANLYYEKPISFVQAALGDTVDVPTIDGPVELKIPAGTQSGTTFRLKG  316 (378)
T ss_pred             EeccccCCCCCCCCccEEEEEEEEcCCCEEEecCCEEEEEecCHHHHhcCCeEEEEcCCceEEEEeCCCCCCCCEEEECC
Confidence            99999998767789999999999999999999999999999999999999999999999988999999999999999999


Q ss_pred             CCCCCCCCCCCCCCEEEEEEEEcCCCCCcchHHHHHHHhh
Q 013277          393 KGAPKLNKPSIRGDHLFTVKVTIPNRIRYVYSPSLTIIQL  432 (446)
Q Consensus       393 ~G~P~~~~~~~~GdL~v~~~v~~P~~ls~~~~~~l~~l~~  432 (446)
                      +|||..+. ..+|||||+|+|.||++|+++|+++|++|..
T Consensus       317 ~G~p~~~~-~~~GdL~v~~~v~~P~~l~~~q~~ll~~~~~  355 (378)
T PRK14283        317 HGMPSLRW-SGKGNLYVKVKVVVPKKLSPKQKELLREFAS  355 (378)
T ss_pred             CCCCCCCC-CCCCCEEEEEEEEeCCCCCHHHHHHHHHHHh
Confidence            99997653 3589999999999999999999999998873

>PRK14291 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.6e-75  Score=596.17  Aligned_cols=351  Identities=40%  Similarity=0.743  Sum_probs=299.9

Q ss_pred             CcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhhhhccccceeeccC--CC
Q 013277           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVG--GG  153 (446)
Q Consensus        76 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~~~~~--~~  153 (446)
                      .+|||++|||+++|+.+|||+|||+||++||||+|+++.+.++|++|++||+||+||.+|+.||+||++++..+.+  .+
T Consensus         2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~~~   81 (382)
T PRK14291          2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAAFSGSGQQQQG   81 (382)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHhhhcccccccccCcccc
Confidence            5799999999999999999999999999999999988889999999999999999999999999999887653211  11


Q ss_pred             CCCCc----CCCcCccccccCCC-CCC-CCCCCCCCcccccccccccCCceeEeeeeecccccccceeeeeccceeeccc
Q 013277          154 SSAYT----TNPFDLFETFFGPS-MGG-FPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEV  227 (446)
Q Consensus       154 ~~~~~----~~~~d~F~~fFg~~-~g~-~~~~~~~~~~~~~~~~~~~g~di~~~l~ltlee~~~G~~k~~~~~~~~~C~~  227 (446)
                      ...|.    .++.|+|++||+.. +++ |++.++.+-.........++.|+.+.|.|||+|+|+|+++++.+++.+.|..
T Consensus        82 ~~~~~~~~~~~~~d~f~~~f~~fg~~~~fg~~~~~~~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~  161 (382)
T PRK14291         82 QEGFSDFGGGNIEDILEDVFDIFGFGDIFGRRRATRERRKTYQRPVKGEDIYQTVEISLEEAYTGTTVSLEVPRYVPCEA  161 (382)
T ss_pred             ccccccccCCCHHHHHHHHHHhccccccccccccccccccccccccCCCCEEEEEEEEHHHhhCCEEEEEEEeeeccCCC
Confidence            11121    23446677775321 011 1111000000000112347889999999999999999999999999999999


Q ss_pred             ccCCccccCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeecCCceEEEEeeEEEEEeCCCCCC
Q 013277          228 CTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVST  307 (446)
Q Consensus       228 C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~  307 (446)
                      |+|+|........+|+.|+|+|.++..    .|++++..+|+.|+|+|. +.+.|..|+|.|.+.+.++++|.||||+++
T Consensus       162 C~G~G~~~~~~~~~C~~C~G~G~~~~~----~g~~~~~~~C~~C~G~G~-~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~  236 (382)
T PRK14291        162 CGGTGYDPGSGEKVCPTCGGSGEIYQR----GGFFRISQTCPTCGGEGV-LREPCSKCNGRGLVIKKETIKVRIPPGVDN  236 (382)
T ss_pred             CccccCCCCCCCccCCCCCCceEEEEe----cceEEEEecCCCCCCceE-EccCCCCCCCCceEEeeeEEEEEeCCCCCC
Confidence            999999988888999999999988764    367777899999999995 788999999999999999999999999999


Q ss_pred             CCEEEEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEEEEeecHHHHhCCCEEEEeccCCe-EEEEeCCCCCCCc
Q 013277          308 GSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGI-SELQVPPGTQPGD  386 (446)
Q Consensus       308 G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~~ldG~-~~l~i~~~~~~g~  386 (446)
                      |++|+|+|+|+++++++.+|||||+|++++|+.|+|+|+||++++.|+|.||++|+++.|+|+||+ ++|+||+++++|+
T Consensus       237 G~~i~~~g~G~~~~~g~~~GDL~v~i~~~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~l~V~Ip~g~~~G~  316 (382)
T PRK14291        237 GSKLRVPGKGHAGRFGGPPGDLYIIVKVKPHPLFERRGDNLYLDVNITVAEAVLGTELEVPLLDGKKEKVKIPPGTKEGD  316 (382)
T ss_pred             CCEEEEecCcCCCCCCCCCccEEEEEEEccCCCeeeecCCeEEEEEeeHHHHhCCCEEEEecCCCCEEEEEECCccCCCC
Confidence            999999999999887888999999999999999999999999999999999999999999999996 6899999999999


Q ss_pred             EEEEccCCCCCCCCCCCCCCEEEEEEEEcCC--CCC------cchHHHHHHHhh
Q 013277          387 VLVLAKKGAPKLNKPSIRGDHLFTVKVTIPN--RIR------YVYSPSLTIIQL  432 (446)
Q Consensus       387 ~~~l~g~G~P~~~~~~~~GdL~v~~~v~~P~--~ls------~~~~~~l~~l~~  432 (446)
                      +++|+|+|||..+. ..+|||||+|+|.||+  .||      ++|+++|++|..
T Consensus       317 ~i~i~G~G~p~~~~-~~~GDL~V~~~V~~P~~~~ls~~~~~~~~~~~~~~~l~~  369 (382)
T PRK14291        317 KIRVPGKGMPRLKG-SGYGDLVVRVHIDVPKISMLSKLMGDGKKAKKLLKELDK  369 (382)
T ss_pred             EEEECCCCCCCCCC-CCCCCEEEEEEEEeCCCcCcCccccCCHHHHHHHHHHHh
Confidence            99999999998654 3689999999999998  599      999999998863

>PRK14293 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.6e-75  Score=594.92  Aligned_cols=351  Identities=55%  Similarity=0.963  Sum_probs=309.1

Q ss_pred             CcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhhhhccccceeeccC-CCC
Q 013277           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVG-GGS  154 (446)
Q Consensus        76 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~~~~~-~~~  154 (446)
                      ..|||+||||+++|+.+|||+|||+||++||||+|+++.+.++|++|++||++|+||.+|+.||+||+++++.+.+ ++.
T Consensus         2 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g~~~~~~~~~~   81 (374)
T PRK14293          2 AADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRARYDQFGEAGVSGAAGFPDM   81 (374)
T ss_pred             CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHHHHhhccccccccCCCcCCc
Confidence            4699999999999999999999999999999999988889999999999999999999999999999887653211 000


Q ss_pred             CCCcCCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeEeeeeecccccccceeeeeccceeecccccCCccc
Q 013277          155 SAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAK  234 (446)
Q Consensus       155 ~~~~~~~~d~F~~fFg~~~g~~~~~~~~~~~~~~~~~~~~g~di~~~l~ltlee~~~G~~k~~~~~~~~~C~~C~G~G~~  234 (446)
                      +.+ .++.|+|++||++. +++   ++.+.. .+.....++.|++++|.|+|||+|.|+++++.+++.+.|+.|+|+|..
T Consensus        82 ~~~-~~~~d~f~~~fg~~-~~~---~~~~~~-~~~~~~~kg~di~~~l~vsLee~~~G~~k~i~~~r~~~C~~C~G~G~~  155 (374)
T PRK14293         82 GDM-GGFADIFETFFSGF-GGA---GGQGGR-RRRRGPQRGDDLRYDLKLDFREAIFGGEKEIRIPHLETCETCRGSGAK  155 (374)
T ss_pred             ccc-cchHHHHHHHhccc-CCC---CCCCcc-ccccCccCCCCeEEEEEeeHHHHhCCceEEEEeeccccCCCCCCcCCC
Confidence            111 12336788888631 111   100000 011123468899999999999999999999999999999999999999


Q ss_pred             cCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeecCCceEEEEeeEEEEEeCCCCCCCCEEEEc
Q 013277          235 MGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVV  314 (446)
Q Consensus       235 ~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i~l~  314 (446)
                      ......+|+.|+|+|.++...++++|++++..+|+.|+|+|+++++.|..|.|.|.+.+.++++|.||||+++|++|+|+
T Consensus       156 ~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~IppG~~~G~~i~l~  235 (374)
T PRK14293        156 PGTGPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIEDPCDACGGQGVKQVTKKLKINIPAGVDTGTRLRVS  235 (374)
T ss_pred             CCCCCeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEeccCCCCCCCCcccccceEEEEEeCCCCCCCCEEEEc
Confidence            88888999999999999888889999999989999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEEEEeecHHHHhCCCEEEEeccCCeEEEEeCCCCCCCcEEEEccCC
Q 013277          315 GEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLAKKG  394 (446)
Q Consensus       315 g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~~ldG~~~l~i~~~~~~g~~~~l~g~G  394 (446)
                      |+|++...+..+|||||+|++++|+.|+|+|+||+++++|+|.||++|+++.|+|+||+++|+||+++++|++++|+|+|
T Consensus       236 g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ldG~~~i~ip~~~~~g~~~ri~g~G  315 (374)
T PRK14293        236 GEGDAGLRGGPPGDLYVYLFVKNDPEFRRDGINILSEIKISYLQAILGDTLEVDTVDGPVELTIPAGTQPNTVLTLENKG  315 (374)
T ss_pred             cCccCCCCCCCCcCEEEEEEEeCCCccChhhhceEEEeccCHHHHhCCCEEEecCCCCCEEEEeCCCCCCCCEEEECCCC
Confidence            99998776677899999999999999999999999999999999999999999999999889999999999999999999


Q ss_pred             CCCCCCCCCCCCEEEEEEEEcCCCCCcchHHHHHHHhh
Q 013277          395 APKLNKPSIRGDHLFTVKVTIPNRIRYVYSPSLTIIQL  432 (446)
Q Consensus       395 ~P~~~~~~~~GdL~v~~~v~~P~~ls~~~~~~l~~l~~  432 (446)
                      ||..++++.+|||||+|+|.||+.|+++|+++|++|+.
T Consensus       316 ~p~~~~~~~~GDL~v~~~v~~P~~l~~~~~~l~~~l~~  353 (374)
T PRK14293        316 VPRLGNPVARGDHLITVKVKIPTRISDEERELLEKLAK  353 (374)
T ss_pred             CCCCCCCCCcCCEEEEEEEECCCCCCHHHHHHHHHHHh
Confidence            99866545689999999999999999999999999884

>PRK14289 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=2.9e-75  Score=595.75  Aligned_cols=355  Identities=42%  Similarity=0.703  Sum_probs=307.0

Q ss_pred             cCcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhcchhhhhhhhhhccccceeeccC-C
Q 013277           75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVG-G  152 (446)
Q Consensus        75 ~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~~~~~-~  152 (446)
                      ...|||++|||+++|+.+|||+|||+||++||||+|++ +.+.++|++|++||++|+||.+|+.||+||+++++.+.+ +
T Consensus         3 ~~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~~~~~~~~~   82 (386)
T PRK14289          3 EKRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAGVGGAAGGG   82 (386)
T ss_pred             ccCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccCCCCC
Confidence            35799999999999999999999999999999999974 578999999999999999999999999999987653211 1


Q ss_pred             CCCCCcCCCcCcc---ccccCCCCCCCCCCCCCCcc-cccccccccCCceeEeeeeecccccccceeeeeccceeecccc
Q 013277          153 GSSAYTTNPFDLF---ETFFGPSMGGFPGMNQTGFR-TRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVC  228 (446)
Q Consensus       153 ~~~~~~~~~~d~F---~~fFg~~~g~~~~~~~~~~~-~~~~~~~~~g~di~~~l~ltlee~~~G~~k~~~~~~~~~C~~C  228 (446)
                      +.++...++.++|   +++|++.++++++++  .+. ........++.|+++.|.|+|+|+|+|+++++.+++.+.|+.|
T Consensus        83 ~~~~~~~~~~~~f~~f~~~fg~~~gg~~~~~--~~~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C  160 (386)
T PRK14289         83 GFSGEGMSMEDIFSMFGDIFGGHGGGFGGFG--GFGGGGSQQRVFRGSDLRVKVKLNLKEISTGVEKKFKVKKYVPCSHC  160 (386)
T ss_pred             CCCCCCcChhhhhHHhhhhhcccccCccccc--ccccccccCCCCCCCCeEEEEEEEHHHhhCCeEEEEEEEeecccCCC
Confidence            1111011233343   333553322211110  001 0011123468899999999999999999999999999999999


Q ss_pred             cCCccccCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeecCCceEEEEeeEEEEEeCCCCCCC
Q 013277          229 TGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTG  308 (446)
Q Consensus       229 ~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G  308 (446)
                      +|+|........+|+.|+|+|.++...++++|++++..+|+.|+|+|+++.+.|..|.|.|.+.+.++++|+||+|+++|
T Consensus       161 ~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G  240 (386)
T PRK14289        161 HGTGAEGNNGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIKKKCKKCGGEGIVYGEEVITVKIPAGVAEG  240 (386)
T ss_pred             CCCCCCCCCCCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccccCcCCCCCCCCcEEeeeEEEEEEeCCCCCCC
Confidence            99999988888999999999999998889999999889999999999999999999999999999999999999999999


Q ss_pred             CEEEEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEEEEeecHHHHhCCCEEEEeccCCeEEEEeCCCCCCCcEE
Q 013277          309 SILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVL  388 (446)
Q Consensus       309 ~~i~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~~ldG~~~l~i~~~~~~g~~~  388 (446)
                      ++|+|+|+|++.+.++.+|||||+|++++|+.|+|+++||++++.|+|.||++|+++.|+|+||+++|.||+++++|+++
T Consensus       241 ~~i~l~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ldg~i~v~ip~g~~~g~~~  320 (386)
T PRK14289        241 MQLSMNGKGNAGKHGGVNGDLLVVIEEEPHPELIRDENDLIYNLLLSVPTAALGGAVEVPTIDGKAKVKIEAGTQPGKVL  320 (386)
T ss_pred             CEEEEeccccCCCCCCCCccEEEEEEEecCCcccccccceeEEeccCHHHHhCCCeEEeecCCceEEEEECCccCCCcEE
Confidence            99999999999877778999999999999999999999999999999999999999999999999899999999999999


Q ss_pred             EEccCCCCCCCCCCCCCCEEEEEEEEcCCCCCcchHHHHHHHhh
Q 013277          389 VLAKKGAPKLNKPSIRGDHLFTVKVTIPNRIRYVYSPSLTIIQL  432 (446)
Q Consensus       389 ~l~g~G~P~~~~~~~~GdL~v~~~v~~P~~ls~~~~~~l~~l~~  432 (446)
                      +|+|+|||..++ ..+|||||+|+|.||+.|+++|+++|++|+.
T Consensus       321 ri~g~G~p~~~~-~~~GDL~v~~~v~~P~~l~~~q~~~l~~l~~  363 (386)
T PRK14289        321 RLRNKGLPSVNG-YGTGDLLVNVSVYIPETLSKEEKQTLEKMEN  363 (386)
T ss_pred             EECCCCcCCCCC-CCCCcEEEEEEEEeCCCCCHHHHHHHHHHHh
Confidence            999999997654 3689999999999999999999999999886

>PRK14292 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=7.8e-74  Score=582.72  Aligned_cols=344  Identities=38%  Similarity=0.695  Sum_probs=303.0

Q ss_pred             cCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhhhhccccceeeccC-CCCC
Q 013277           77 GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVG-GGSS  155 (446)
Q Consensus        77 ~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~~~~~-~~~~  155 (446)
                      .|||++|||+++|+.+|||+|||+||++||||+++++.+.++|++|++||++|+||.+|+.||+||+++..+..+ ++.+
T Consensus         2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~~~~~~~~~~~~   81 (371)
T PRK14292          2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAPGAGMPGGDPFG   81 (371)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCcccccccCCcccC
Confidence            489999999999999999999999999999999988889999999999999999999999999999876321111 1111


Q ss_pred             CCcCCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeEeeeeecccccccceeeeeccceeecccccCCcccc
Q 013277          156 AYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKM  235 (446)
Q Consensus       156 ~~~~~~~d~F~~fFg~~~g~~~~~~~~~~~~~~~~~~~~g~di~~~l~ltlee~~~G~~k~~~~~~~~~C~~C~G~G~~~  235 (446)
                      ++..++.|+|+.||++..  +++    +.+.   ....++.|+.+.+.|+|+|+|+|+++++.+++.+.|+.|+|+|...
T Consensus        82 ~~~~d~~d~f~~~fg~~~--~~~----~~~~---~~~~~g~d~~~~l~~sLee~~~G~~~~v~~~r~~~C~~C~G~G~~~  152 (371)
T PRK14292         82 GMGFDPMDIFEQLFGGAG--FGG----GRGR---RGPARGDDLETEARITLEQARAGEEVEVEVDRLTECEHCHGSRTEP  152 (371)
T ss_pred             ccCCChHHHHHHhhCCCC--cCC----CCCc---ccccCCCCeEEEEeccHHHHcCCeEEEEEEEeeecCCCCcccccCC
Confidence            222355688888887421  110    0000   1134688999999999999999999999999999999999999986


Q ss_pred             Ccc-eeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeecCCceEEEEeeEEEEEeCCCCCCCCEEEEc
Q 013277          236 GSK-MRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVV  314 (446)
Q Consensus       236 ~~~-~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i~l~  314 (446)
                      ... ..+|+.|+|+|.+....++.+|++++..+|+.|+|+|+.+...|..|.|.|.+.+.++++|.||+|+++|++|+|+
T Consensus       153 ~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~  232 (371)
T PRK14292        153 GGKPPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQIITDPCTVCRGRGRTLKAETVKVKLPRGIDEGYRIRVA  232 (371)
T ss_pred             CCCCCccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceecCCCCCCCCCceEEeecceEEEEECCCCCCCcEEEEe
Confidence            653 7899999999999887788889998889999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEEEEeecHHHHhCCCEEEEeccCCeEEEEeCCCCCCCcEEEEccCC
Q 013277          315 GEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLAKKG  394 (446)
Q Consensus       315 g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~~ldG~~~l~i~~~~~~g~~~~l~g~G  394 (446)
                      |+|++.+++.  |||||+|++++|+.|+|+|+||++++.|+|.||++|+++.|+|+||+..|.||+++++|++++|+|+|
T Consensus       233 G~G~~~~~~~--GDL~v~i~v~~h~~f~r~g~dL~~~~~isl~eAl~G~~~~i~tldG~~~v~ip~g~~~g~~~~i~g~G  310 (371)
T PRK14292        233 GMGNEGPGGN--GDLYVHIEMEPHPELRREQEHLIYEARIGFAKAALGGQITVPTLDGPQVIEVKPGTQHGDLHRLRGQG  310 (371)
T ss_pred             cCcCCCCCCC--CCEEEEEEEecCCccccchhceeEEeccCHHHHhCCCeEEEECCCCCEEEecCCCcCCCcEEEECCCC
Confidence            9999976443  99999999999999999999999999999999999999999999999889999999999999999999


Q ss_pred             CCCCCCCCCCCCEEEEEEEEcCCCCCcchHHHHHHHhh
Q 013277          395 APKLNKPSIRGDHLFTVKVTIPNRIRYVYSPSLTIIQL  432 (446)
Q Consensus       395 ~P~~~~~~~~GdL~v~~~v~~P~~ls~~~~~~l~~l~~  432 (446)
                      ||..++ ..+|||||+|+|.||+.|+++|+++|+++..
T Consensus       311 ~p~~~~-~~~GDL~V~~~v~~P~~l~~~q~~ll~~~~~  347 (371)
T PRK14292        311 MPRLQG-AGTGDLIVEYEIAVPKQLSPEAREALEAYAR  347 (371)
T ss_pred             CCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHh
Confidence            997654 3579999999999999999999999999874

>PRK14290 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=2.5e-73  Score=577.17  Aligned_cols=347  Identities=37%  Similarity=0.654  Sum_probs=297.1

Q ss_pred             CcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--chHHHHHHHHHHHhhcchhhhhhhhhhccccceeeccCC-
Q 013277           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEP--GATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGG-  152 (446)
Q Consensus        76 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~--~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~~~~~~-  152 (446)
                      ..|||+||||+++|+.+|||+|||+||++||||++++.  .+.++|++|++||++|+||.+|+.||+||+.+++.+.++ 
T Consensus         2 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~~~~~~~~~   81 (365)
T PRK14290          2 AKDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVDFGAGGSNF   81 (365)
T ss_pred             CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCcccccCCCCc
Confidence            36999999999999999999999999999999999753  688999999999999999999999999999877531111 


Q ss_pred             CCCCC--cCCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeEeeeeecccccccceeeeeccceeecccccC
Q 013277          153 GSSAY--TTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTG  230 (446)
Q Consensus       153 ~~~~~--~~~~~d~F~~fFg~~~g~~~~~~~~~~~~~~~~~~~~g~di~~~l~ltlee~~~G~~k~~~~~~~~~C~~C~G  230 (446)
                      +.+.+  ..++.|+|+.||++.+++ ..++  +.+. ......++.|+++.|.|||+|+|+|+++++.+.+.+.|+.|+|
T Consensus        82 ~~~~~~~~~~~~d~f~~~fg~~~~~-~~~~--~~~~-~~~~~~~~~di~~~l~lsLee~~~G~~~~i~~~r~~~C~~C~G  157 (365)
T PRK14290         82 NWDNFTHFSDINDIFNQIFGGNFGS-DFFS--GFGN-QQSTRNIDLDIYTNLDISLEDAYYGTEKRIKYRRNAMCPDCSG  157 (365)
T ss_pred             cccccccccchhHHHHHHhcCcccc-cccc--cccc-ccCCCCCCCCEEEEEEecHHHhcCCEEEEEEeeecccCCCCcc
Confidence            00111  124567888888742111 0000  0000 1111224789999999999999999999999999999999999


Q ss_pred             CccccCcceeeCCCCCCccEEEEeeeCCceeeee--eecCCCCCCcceEeceeeeecCCceEEEEeeEEEEEeCCCCCCC
Q 013277          231 TGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQ--VSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTG  308 (446)
Q Consensus       231 ~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~--~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G  308 (446)
                      +|.... ...+|+.|+|+|.++...  .+|++.+  ..+|+.|+|+|+++.+.|..|+|.|.+.+.++++|.||+|+.+|
T Consensus       158 ~g~~~~-~~~~C~~C~G~G~~~~~~--~~g~~~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G  234 (365)
T PRK14290        158 TGAKNG-KLITCPTCHGTGQQRIVR--GQGFFRMVTVTTCRTCGGRGRIPEEKCPRCNGTGTVVVNEDISVKIPKGATDN  234 (365)
T ss_pred             ccCCCC-CCccCCCCCCcCEEEEEe--ccCeEEEEEEEeCCCCCCceeEccCCCCCCCCceeEEEeeEEEEEECCCCCCC
Confidence            999876 578999999999877655  3566543  47999999999999999999999999999999999999999999


Q ss_pred             CEEEEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEEEEeecHHHHhCCCEEEEeccCCeEEEEeCCCCCCCcEE
Q 013277          309 SILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVL  388 (446)
Q Consensus       309 ~~i~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~~ldG~~~l~i~~~~~~g~~~  388 (446)
                      ++|+|+|+|+.  .++.+|||||+|++++|+.|+|+|+||+++++|||.||++|++++|+|++|+++|+||+++++|+++
T Consensus       235 ~~i~~~g~G~~--~~~~~GDL~v~v~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~~~~g~i~V~Ip~g~~~g~~i  312 (365)
T PRK14290        235 LRLRVKGKGQS--YGGRTGDLYVVLRVNNDPNIQRINDDLYVDQKINFPQAALGGEIEIKLFREKYNLKIPEGTQPGEVL  312 (365)
T ss_pred             cEEEEccccCC--CCCCCCCEEEEEEEcCCCCEEEecCCEEEEEEeCHHHHhCCCEEEEEcCCceEEEEECCccCCCcEE
Confidence            99999999996  4678999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEccCCCCCCCCCCCCCCEEEEEEEEcCCCCCcchHHHHHHHhh
Q 013277          389 VLAKKGAPKLNKPSIRGDHLFTVKVTIPNRIRYVYSPSLTIIQL  432 (446)
Q Consensus       389 ~l~g~G~P~~~~~~~~GdL~v~~~v~~P~~ls~~~~~~l~~l~~  432 (446)
                      +|+|+|||..+. ..+|||||+|+|.+|+.|+++|+++|++|+.
T Consensus       313 ri~g~G~p~~~~-~~~GDL~V~~~V~~P~~l~~~~~~ll~~~~~  355 (365)
T PRK14290        313 KIKGAGMPHLNG-HGSGDLLVRINVEVPKRLTSKQKELIREFFD  355 (365)
T ss_pred             EECCCCCCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHH
Confidence            999999997654 3589999999999999999999999998763

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.8e-69  Score=528.22  Aligned_cols=329  Identities=40%  Similarity=0.720  Sum_probs=295.1

Q ss_pred             CcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhhhhccccceeeccCCCCC
Q 013277           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGSS  155 (446)
Q Consensus        76 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~~~~~~~~~  155 (446)
                      ...||+||||+++||++|||+|||+||++||||+|++  +.++|++|++||||||||++|++||+||+++++.+.+++  
T Consensus         3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~--~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~g~~~~--   78 (337)
T KOG0712|consen    3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD--AGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQGGGGGG--   78 (337)
T ss_pred             ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc--HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcccCCCC--
Confidence            4579999999999999999999999999999999975  889999999999999999999999999999986543222  


Q ss_pred             CCcCCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeEeeeeecccccccceeeeeccceeecccccCCcccc
Q 013277          156 AYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKM  235 (446)
Q Consensus       156 ~~~~~~~d~F~~fFg~~~g~~~~~~~~~~~~~~~~~~~~g~di~~~l~ltlee~~~G~~k~~~~~~~~~C~~C~G~G~~~  235 (446)
                      ++.    . |++||+  +|+.++        +.   +.++.|+.+++.|+|||+|.|.++++.++++..|+.|.|.|...
T Consensus        79 g~~----~-f~~~F~--~g~~~~--------~~---~~rg~~~~~~~~~~Le~~y~G~s~kl~l~~~~iCs~C~GsGgks  140 (337)
T KOG0712|consen   79 GFG----G-FSQFFG--FGGNGG--------RG---RQRGKDVVHQLKVTLEELYMGKSKKLFLSRNFICSKCSGSGGKS  140 (337)
T ss_pred             CCc----c-HHHhcc--CCCcCc--------cc---cccCCCceEEEEEEHHHhhcCCccceecccCccCCcCCCCCCCC
Confidence            111    1 788887  222111        11   12389999999999999999999999999999999999999987


Q ss_pred             CcceeeCCCCCCccEEEEeeeCCceeeeee-ecCCCCCCcceE--eceeeeecCCceEEEEeeEEEEEeCCCCCCCCEEE
Q 013277          236 GSKMRICSTCGGRGQVMRTDQTPFGLFSQV-SVCPSCGGEGEV--ISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILR  312 (446)
Q Consensus       236 ~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~-~~C~~C~G~G~~--~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i~  312 (446)
                      +.. ..|+.|.|+|..+++.++.+|+.++. ..|..|+|.|.+  ..+.|+.|.|.+.+.+.+.++|.|++|+.+++.|.
T Consensus       141 g~~-~~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~~~~kd~C~~C~G~~~v~~kkil~v~V~~g~~~~~ki~  219 (337)
T KOG0712|consen  141 GSA-PKCTTCRGSGVQTRTRQMGPGMVQSPQLVCDSCNGSGETISLKDRCKTCSGAKVVREKKILEVHVEPGMPHGQKIT  219 (337)
T ss_pred             CCC-CCCCCCCCCCceeEEEeccccccccceeEeccCCCccccccccccCcccccchhhhhhheeeccccCCCcccceee
Confidence            764 48999999999999999999998876 799999999998  56899999999999999999999999999999999


Q ss_pred             EccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEEEEeecHHHHhCCCEEEEeccCCe-EEEEeCCC--CCCCcEEE
Q 013277          313 VVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGI-SELQVPPG--TQPGDVLV  389 (446)
Q Consensus       313 l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~~ldG~-~~l~i~~~--~~~g~~~~  389 (446)
                      +.|++++.+ +..+||+++.|..++|+.|.|+++||++..+|+|.||++|+.+.+.|+||+ +++.++|+  +.||++++
T Consensus       220 f~geadea~-g~~pgD~vl~i~~k~h~~F~Rrg~dL~~~~~i~l~eal~G~~~~~~~ldGr~l~~~~~pg~vi~~~~~~~  298 (337)
T KOG0712|consen  220 FKGEADEAP-GTKPGDVVLLIDQKEHPGFDRRGSDLYRKLTISLVEALCGFQRVWETLDGRLLKLSSKPGEVISPGDTKR  298 (337)
T ss_pred             eeeeeeecC-CCcCccEEEEecccccccceecccccceeeecchhhccccceEEEEccCCceEEEecCCCceeChhHEEe
Confidence            999999976 556999999999999999999999999999999999999999999999998 57888886  79999999


Q ss_pred             EccCCCCCCCCCCCCCCEEEEEEEEcCCCCCcchHHHHHHHh
Q 013277          390 LAKKGAPKLNKPSIRGDHLFTVKVTIPNRIRYVYSPSLTIIQ  431 (446)
Q Consensus       390 l~g~G~P~~~~~~~~GdL~v~~~v~~P~~ls~~~~~~l~~l~  431 (446)
                      |+|+|||+.+++  +|||||+|+|+||+ +++++...|+.++
T Consensus       299 v~~~gmp~~~~~--~g~lyi~~~v~fp~-~~~~~~~~l~~~l  337 (337)
T KOG0712|consen  299 VEGEGMPIFRNP--KGDLYIKFEVKFPK-LSPSQLKMLEDLL  337 (337)
T ss_pred             ecCCCcccccCC--CCcEEEEEEEEcCC-CChHHHHHHHhhC
Confidence            999999999886  89999999999999 9999999998764

>PRK14299 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=6.2e-59  Score=458.23  Aligned_cols=274  Identities=41%  Similarity=0.694  Sum_probs=227.6

Q ss_pred             cCcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhhhhccccceeeccC---
Q 013277           75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVG---  151 (446)
Q Consensus        75 ~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~~~~~---  151 (446)
                      +..|||+||||+++||.+|||+|||+||++||||+|+++.+.++|++|++||++|+||.+|+.||+||++++..+..   
T Consensus         2 ~~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~~~~~~~~~~~   81 (291)
T PRK14299          2 AYKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTTAASAGWQGPP   81 (291)
T ss_pred             CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCccccccccCCC
Confidence            35799999999999999999999999999999999988889999999999999999999999999999875432110   


Q ss_pred             ---CCCCCCc----CCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeEeeeeecccccccceeeeeccceee
Q 013277          152 ---GGSSAYT----TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLET  224 (446)
Q Consensus       152 ---~~~~~~~----~~~~d~F~~fFg~~~g~~~~~~~~~~~~~~~~~~~~g~di~~~l~ltlee~~~G~~k~~~~~~~~~  224 (446)
                         ++.+.+.    .++.|+|++|||+. +++++++ ..+... .....++.|+++++.|||+|++.|+++++.+.    
T Consensus        82 ~~~~~~~~~~~~~~~~~~d~f~~~fgg~-~~~~~~g-~~~~~~-~~~~~~g~dl~~~l~isL~ea~~G~~~~i~l~----  154 (291)
T PRK14299         82 PGPPGGGDFSGFNVGDFSDFFQQLFGGR-GGFGGFG-DLFGSV-GRRARKGRDLEAELPLTLEEAYRGGEKVVEVA----  154 (291)
T ss_pred             CCCCCCCCccccCcCCHHHHHHHHhCCC-CCCCCcc-cccccc-cCCCCCCCCEEEEEEecHHHHhCCCeEEEeeC----
Confidence               0111121    23346777787631 1111110 001110 01234688999999999999999998876531    


Q ss_pred             cccccCCccccCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeecCCceEEEEeeEEEEEeCCC
Q 013277          225 CEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPG  304 (446)
Q Consensus       225 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G  304 (446)
                                                                                           .++++|+||+|
T Consensus       155 ---------------------------------------------------------------------g~~~~V~Ip~G  165 (291)
T PRK14299        155 ---------------------------------------------------------------------GERLSVRIPPG  165 (291)
T ss_pred             ---------------------------------------------------------------------CEEEEEecCCC
Confidence                                                                                 24678999999


Q ss_pred             CCCCCEEEEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEEEEeecHHHHhCCCEEEEeccCCeEEEEeCCCCCC
Q 013277          305 VSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQP  384 (446)
Q Consensus       305 ~~~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~~ldG~~~l~i~~~~~~  384 (446)
                      +++|++|+++|+|++.      |||||+|++++|+.|+|+|+||+++++|||.||++|+++.|+|+||+++|+||+++++
T Consensus       166 ~~~G~~ir~~g~G~~~------GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~v~tldG~~~v~ip~~~~~  239 (291)
T PRK14299        166 VREGQVIRLAGKGRQG------GDLYLVVRLLPHPVFRLEGDDLYATVDVPAPIAVVGGKVRVMTLDGPVEVTIPPRTQA  239 (291)
T ss_pred             cCCCcEEEECCCCCCC------CCEEEEEEEcCCCCeEEECCEEEEEEecCHHHHhCCCEEEEECCCCCEEEEeCCCcCC
Confidence            9999999999999973      9999999999999999999999999999999999999999999999989999999999


Q ss_pred             CcEEEEccCCCCCCCCCCCCCCEEEEEEEEcCCCCCcchHHHHHHHhh
Q 013277          385 GDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRIRYVYSPSLTIIQL  432 (446)
Q Consensus       385 g~~~~l~g~G~P~~~~~~~~GdL~v~~~v~~P~~ls~~~~~~l~~l~~  432 (446)
                      |++++|+|+|||..  ++.+|||||+|+|.+|+.|+++|+++|++|..
T Consensus       240 g~~~rl~g~G~p~~--~~~~GDL~v~~~V~~P~~l~~~~~~~l~~l~~  285 (291)
T PRK14299        240 GRKLRLKGKGWPRG--PAGRGDQYAEVRITIPTRPTPEEERLYKQLAE  285 (291)
T ss_pred             CCEEEECCCCCCCC--CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHh
Confidence            99999999999963  24689999999999999999999999999863

>PRK10266 curved DNA-binding protein CbpA; Provisional

Probab=100.00  E-value=9e-58  Score=453.25  Aligned_cols=284  Identities=30%  Similarity=0.533  Sum_probs=234.7

Q ss_pred             CcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhhhhcccc----ceeeccC
Q 013277           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEA----GVKSTVG  151 (446)
Q Consensus        76 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~----~~~~~~~  151 (446)
                      .+|||++|||+++|+.+|||+|||+||++||||+++++.+.++|++|++||++|+||.+|+.||+||..    ++.....
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~~~~~~~~~~~~~   82 (306)
T PRK10266          3 LKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQHRNDPQFNRQFQ   82 (306)
T ss_pred             cCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHhhccccCcccccccc
Confidence            369999999999999999999999999999999998888999999999999999999999999999854    2221101


Q ss_pred             C-CCCCCc-CCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeEeeeeecccccccceeeeeccceeeccccc
Q 013277          152 G-GSSAYT-TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCT  229 (446)
Q Consensus       152 ~-~~~~~~-~~~~d~F~~fFg~~~g~~~~~~~~~~~~~~~~~~~~g~di~~~l~ltlee~~~G~~k~~~~~~~~~C~~C~  229 (446)
                      . +...+. .++.++|+.||+..    ++.     ..  +....++.|+.+++.|+|+|++.|+.+++.+++.    .  
T Consensus        83 ~~~~~~~~~~~~~~~f~~~~g~~----~~~-----~~--~~~~~kg~di~~~v~isLee~~~G~~k~i~~~~~----~--  145 (306)
T PRK10266         83 HGDGQSFNAEDFDDIFSSIFGQH----ARQ-----SR--QRPAARGHDIEIEVAVFLEETLTEHKRTISYNLP----V--  145 (306)
T ss_pred             cCCCCCCCCCCHHHHHHHHhCCC----CCC-----CC--CCCCCCCCceEEEEEEEHHHhcCCceEEEEEecc----c--
Confidence            0 111121 23446677777631    110     00  1123468899999999999999999998877542    1  


Q ss_pred             CCccccCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeecCCceEEEEeeEEEEEeCCCCCCCC
Q 013277          230 GTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGS  309 (446)
Q Consensus       230 G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~  309 (446)
                                     |.|.|.+..                                      ...++++|.||+|+++|+
T Consensus       146 ---------------~~g~G~~~~--------------------------------------~~~~~~~V~Ip~G~~~G~  172 (306)
T PRK10266        146 ---------------YNAFGMIEQ--------------------------------------EIPKTLNVKIPAGVGNGQ  172 (306)
T ss_pred             ---------------ccCCCeEEE--------------------------------------eeeEEEEEEECCCCcCCc
Confidence                           222232110                                      113579999999999999


Q ss_pred             EEEEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEEEEeecHHHHhCCCEEEEeccCCeEEEEeCCCCCCCcEEE
Q 013277          310 ILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLV  389 (446)
Q Consensus       310 ~i~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~~ldG~~~l~i~~~~~~g~~~~  389 (446)
                      +|+++|+|++..++..+|||||+|++++|+.|+|+|+||+++++|||.+|++|+++.|+|+||++.|+||+++++|++++
T Consensus       173 ~i~~~g~G~~~~~~~~~GDl~v~i~v~ph~~f~r~g~DL~~~~~Isl~~al~G~~~~i~~~~g~v~v~ip~g~~~g~~~r  252 (306)
T PRK10266        173 RIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGQDLEIVVPLAPWEAALGAKVTVPTLKESILLTIPPGSQAGQRLR  252 (306)
T ss_pred             EEEEecCCcCCCCCCCCccEEEEEEEcCCCCeEEeCCceEEEEecCHHHHhCCCEEEeeCCCccEEEEeCCCcCCCCEEE
Confidence            99999999998777789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EccCCCCCCCCCCCCCCEEEEEEEEcCCCCCcchHHHHHHHhh
Q 013277          390 LAKKGAPKLNKPSIRGDHLFTVKVTIPNRIRYVYSPSLTIIQL  432 (446)
Q Consensus       390 l~g~G~P~~~~~~~~GdL~v~~~v~~P~~ls~~~~~~l~~l~~  432 (446)
                      |+|+|||..+   .+|||||+|+|.+|+.|+++|+++|++|..
T Consensus       253 i~g~G~p~~~---~~GdL~v~~~v~~P~~l~~~q~~l~~~l~~  292 (306)
T PRK10266        253 VKGKGLVSKK---QTGDLYAVLKIVMPPKPDEKTAALWQQLAD  292 (306)
T ss_pred             ECCCCCCCCC---CCCCEEEEEEEECCCCCCHHHHHHHHHHHh
Confidence            9999999743   489999999999999999999999999875

>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.9e-43  Score=338.86  Aligned_cols=313  Identities=34%  Similarity=0.489  Sum_probs=238.9

Q ss_pred             ecccCcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhcchhhhhhhhhhccccceeecc
Q 013277           72 VVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTV  150 (446)
Q Consensus        72 ~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~~~~  150 (446)
                      .+...+|||++|||+++|+..|||+||||||++||||+|++ |.|.+.|++|+.||+|||||++|+.||+||++++....
T Consensus        11 ~v~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~~~~   90 (336)
T KOG0713|consen   11 AVLAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLKDEN   90 (336)
T ss_pred             hhhcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhcccc
Confidence            45567899999999999999999999999999999999995 88999999999999999999999999999999987431


Q ss_pred             CCCCCCCcCCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeEeeeeecccccccceeeeeccceeecccccC
Q 013277          151 GGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTG  230 (446)
Q Consensus       151 ~~~~~~~~~~~~d~F~~fFg~~~g~~~~~~~~~~~~~~~~~~~~g~di~~~l~ltlee~~~G~~k~~~~~~~~~C~~C~G  230 (446)
                      ....++..  ..++|..||+.....+++-       .......++.++...+..+++++|.|...+..-...+.|.. .|
T Consensus        91 ~~~~~g~~--~~~~f~~~f~dfg~~~~g~-------~~~e~~~~g~~V~~~~e~~~~h~y~~~~~e~~r~~~v~~~~-~g  160 (336)
T KOG0713|consen   91 KDGEGGGG--GNDIFSAFFGDFGVTVGGN-------PLEEALPKGSDVSSDLEKQLEHFYMGNFVEEVREKGVYKPA-PG  160 (336)
T ss_pred             cccccCCc--ccchHHHhhcccccccCCC-------cccCCCCCCceEEeehhhchhhhhcccHHHHHhccCceeec-Cc
Confidence            10111100  1466777776432111111       11122568899999999999999998865555444443322 11


Q ss_pred             CccccCcceeeCCCCCCccEEEEeeeCCceeeee--eecCCCCCCcceEeceeeeecCCceEEEEeeEEEEEeCCCCCCC
Q 013277          231 TGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQ--VSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTG  308 (446)
Q Consensus       231 ~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~--~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G  308 (446)
                      +        .   .|+-+ ..+.+++...|++++  ...|..|.+              .+.+.++.++++.+..|+..|
T Consensus       161 ~--------~---~~~~~-~~~~~~~~~~g~~~~~q~~~~~~~~~--------------~k~~~e~~~~~~~~~~~~~~~  214 (336)
T KOG0713|consen  161 T--------R---KCNCR-LEMFTQQEGPGRFQMLQEAVCDECPN--------------VKLVLEEDPLEVEFERGDADG  214 (336)
T ss_pred             c--------c---ccCCh-hhheeeccCCChhhhhhhhhhccCCc--------------cceeecCCceeeeeeecccCC
Confidence            1        0   11111 112222333333322  245555555              555566789999999999999


Q ss_pred             CEEEEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEEEEeecHHHHhCCCEEEEeccCCeE-EEEeCCCCCCCcE
Q 013277          309 SILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGIS-ELQVPPGTQPGDV  387 (446)
Q Consensus       309 ~~i~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~~ldG~~-~l~i~~~~~~g~~  387 (446)
                      ....+..+|.+.. -+.+||+++.+...+|+.|.|+++|+++++.+++.+++.|+..++.++|+.. .+..-.++.|+..
T Consensus       215 ~~~~~~~~~~~h~-~~~~gD~~f~~~~y~~~~~~~k~~~~~~n~~~sl~~~~v~~~~e~~~~d~~~~~~~r~~~~~p~~~  293 (336)
T KOG0713|consen  215 PEEIFELEGEPHI-DGVPGDLFFKIVSYTHPRFERKGDDLYTNVTISLEAALVGFEMEILHLDGHYVEVSRKKITWPGAR  293 (336)
T ss_pred             ceeeeeccCCcce-ecccCCceeeeEEecccceecCccchhhHHHHHHHHHHHHHHHHhhccchhhhhhhhhhccccchh
Confidence            9999999999865 4679999999999999999999999999999999999999999999999973 4555567889999


Q ss_pred             EEEccCCCCCCCCCCCCCCEEEEEEEEcCCC-CCc
Q 013277          388 LVLAKKGAPKLNKPSIRGDHLFTVKVTIPNR-IRY  421 (446)
Q Consensus       388 ~~l~g~G~P~~~~~~~~GdL~v~~~v~~P~~-ls~  421 (446)
                      ++..++|||...+....|+++++|.+.+|.+ ++.
T Consensus       294 ~~~~~~~~~~l~~~~~~~~~~~t~~~~~~~~~~~~  328 (336)
T KOG0713|consen  294 TRKKGEGMPLLKNRNEKGNLYVTFDVEFPKSSLSD  328 (336)
T ss_pred             hhhhhccchhhhccchhcceeEEecccCcccccch
Confidence            9999999998777678899999999999965 555

>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ

Probab=100.00  E-value=1.1e-40  Score=349.08  Aligned_cols=125  Identities=17%  Similarity=0.187  Sum_probs=113.5

Q ss_pred             EEEEeeEEEEEeCCCCCCCCEEEEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEEEEeecHHHHhCCCEEEEec
Q 013277          290 RIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKT  369 (446)
Q Consensus       290 ~v~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~~  369 (446)
                      .+.+.++++|+||+|+++|++|+|+|+|+.+++ + +|||||+|++++|+.|+|+|+|||+++.|+|.+||+|+++.|+|
T Consensus       692 tvkE~ktLeVkIPpGVkdGqkIRf~GeGDegpg-g-~GDLyVvIkVKPHp~FrRdGdDL~~~v~ISL~EALLGgtIeIpT  769 (871)
T TIGR03835       692 TTNEAITLEIQLPITSQLNISAIFKGFGHDFGN-G-CGDLKVVFKVIPSNFFQIKNDGLHVAALVDPLVAYNGGIIDVFG  769 (871)
T ss_pred             eeeeeEEEEEecCCCCCCCCEEEeccccCCCCC-C-CCCEEEEEEEcCCCCeEEECCeEEEEEecCHHHHhcCCEEEeeC
Confidence            345567999999999999999999999998653 3 49999999999999999999999999999999999999999999


Q ss_pred             cCCeEEEEeCCCCCCCcEEEEccCCCCCCCCCCCCCCEEEEEEEE-cCCC
Q 013277          370 VEGISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVT-IPNR  418 (446)
Q Consensus       370 ldG~~~l~i~~~~~~g~~~~l~g~G~P~~~~~~~~GdL~v~~~v~-~P~~  418 (446)
                      |||++.|.||+++++|++++|+|+|||..+  +.||||||+|+|. ++++
T Consensus       770 LDGrVkLkIPpgTqpGqvLRIkGKGMP~~~--~~RGDLyV~f~V~~~~k~  817 (871)
T TIGR03835       770 PNKLFNVRIPGGIKVNDQVIFKDLGLTKTK--YDKGSLIVHLYYSSVMKK  817 (871)
T ss_pred             CCCCEEEeeCCCCCCCcEEEECCCCCCCCC--CCCCCEEEEEEEeecccc
Confidence            999988999999999999999999999543  4589999999998 5553

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.

>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.2e-41  Score=330.98  Aligned_cols=245  Identities=44%  Similarity=0.838  Sum_probs=216.9

Q ss_pred             CchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhhhhccccceeeccCCCCCCC
Q 013277           78 DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGSSAY  157 (446)
Q Consensus        78 d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~~~~~~~~~~~  157 (446)
                      |||+||||+++|+..|||+||++||++||||.|+++++.++|++|.+|||+|+|+++|+.||.++..+        .+.+
T Consensus        44 d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~--------~~~~  115 (288)
T KOG0715|consen   44 DYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQEYDVYGLEQ--------HGEF  115 (288)
T ss_pred             chhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhc--------cccc
Confidence            99999999999999999999999999999999999999999999999999999999999999998765        1122


Q ss_pred             cCCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeEeeeeecccccccceeeeeccceeecccccCCccccCc
Q 013277          158 TTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGS  237 (446)
Q Consensus       158 ~~~~~d~F~~fFg~~~g~~~~~~~~~~~~~~~~~~~~g~di~~~l~ltlee~~~G~~k~~~~~~~~~C~~C~G~G~~~~~  237 (446)
                      ..++++.|..+|++.      +          .....+.++++++.+.|+++..|+.+.+.+.....|..|.|.|...+.
T Consensus       116 ~g~~~~~~~~~~~~~------~----------~~~~~~~~~~~d~~~~f~~A~~g~~~~~~~~~~~~~~t~~~~~~~~~~  179 (288)
T KOG0715|consen  116 GGNPFDVFLEFFGGK------M----------NKRVPDKDQYYDLSLDFKEAVRGSKKRISFNVLSDCETCFGSGAEEGA  179 (288)
T ss_pred             cCCccchHHHhhccc------c----------cccccCcccccccccCHHHHhhccccceEEEeecccccccCcCccccc
Confidence            337888999888741      0          012345678899999999999999999999999999999999999999


Q ss_pred             ceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeecCCceEEEEeeEEEEEeCCCCCCCCEEEEccCC
Q 013277          238 KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEG  317 (446)
Q Consensus       238 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i~l~g~G  317 (446)
                      ....|..|.|+|.+......++.+.    +|..|+|.|.+..+.|..|.|.|.+...+.+.|.+|+|+.++.+|++.+.|
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~f~~~----~~~~c~~~~~~~~~~c~~~~g~~~v~~~k~i~i~~~~g~~~~~~l~~~~~~  255 (288)
T KOG0715|consen  180 KRESCKTCSGRGLVSNPKEDPFILY----TCSYCLGRGLVLRDNCQACSGAGQVRRAKDIMIVLPAGVRSADTLRFAGHG  255 (288)
T ss_pred             ccccchhhhCcccccccccCCccee----ecccccccceeccchHHHhhcchhhhhheeEEeecCcccccccEEEEecCC
Confidence            9999999999997655443333332    899999999999999999999999999999999999999999999999987


Q ss_pred             CCCCCCCCCccEEEEEEEEeccCcccCCcceEEEEeecHHH
Q 013277          318 DAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLD  358 (446)
Q Consensus       318 ~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~~~Isl~e  358 (446)
                      ..        ||+|.+.|.+++.|+|+|.|++++..|++.|
T Consensus       256 ~~--------~l~v~~~v~~~~~~~r~~~~i~~~~~i~~~~  288 (288)
T KOG0715|consen  256 ND--------DLFVRLIVAKSPSFRREGKDILYDAIISFTQ  288 (288)
T ss_pred             cc--------eEEEEEEeccCcccccccCcccccccccccC
Confidence            64        9999999999999999999999999998754

>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.87  E-value=1.2e-21  Score=192.49  Aligned_cols=263  Identities=34%  Similarity=0.488  Sum_probs=181.7

Q ss_pred             cCcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--chHHHHHHHHHHHhhcchhhhhhhhhhccccceeeccC-
Q 013277           75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEP--GATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVG-  151 (446)
Q Consensus        75 ~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~--~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~~~~~-  151 (446)
                      +..|||++|+|.++|+.+|||+||+++|+++|||+++.+  .+.++|+++.|||++|+|+.+|..||+||++++.+... 
T Consensus         1 ~~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~~~~~~~~~~   80 (306)
T KOG0714|consen    1 MGKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGEEGLKGGGSF   80 (306)
T ss_pred             CcccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCccccccCCCC
Confidence            357999999999999999999999999999999998876  56668999999999999999999999999876654111 


Q ss_pred             -C--CCC---CCcCCCcCccccccCCCCCCCCC---------------------CCCCCcc-cc-------cccccccCC
Q 013277          152 -G--GSS---AYTTNPFDLFETFFGPSMGGFPG---------------------MNQTGFR-TR-------RRSTVTKGE  196 (446)
Q Consensus       152 -~--~~~---~~~~~~~d~F~~fFg~~~g~~~~---------------------~~~~~~~-~~-------~~~~~~~g~  196 (446)
                       .  ..+   ....++.++|.+|||........                     ....... .+       ......+..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (306)
T KOG0714|consen   81 SSSFTSELFYFLFRKPDKDFYEFFGVSSPFSGSKKGYRDKNAAPGEEAFKSEGKAFQSLYGPKRKQYDSSGSDRSARQSP  160 (306)
T ss_pred             CCCCCCCcceeccCchhhhHHHHhCCCCCCccccccCCccccccCccccccccccccccCCCcccccccccccccccCCC
Confidence             0  011   12334556777787722110000                     0000000 00       000000111


Q ss_pred             ceeEeeeeecccccccceeeeeccceeecccccCCccccCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcce
Q 013277          197 DLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGE  276 (446)
Q Consensus       197 di~~~l~ltlee~~~G~~k~~~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~  276 (446)
                      .+...+.+++++.+.++.+...+.+...                                                    
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------------------  188 (306)
T KOG0714|consen  161 PVEHPLRVSLEDLYKGESKKMKISRQSF----------------------------------------------------  188 (306)
T ss_pred             CccCCcceeHHHhccccceeeecccccc----------------------------------------------------
Confidence            1222333355555555544443322110                                                    


Q ss_pred             EeceeeeecCCceEEEEeeEEEEEeCCCCCCCCEEEEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEEE--Eee
Q 013277          277 VISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFST--ISI  354 (446)
Q Consensus       277 ~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~--~~I  354 (446)
                         ......    .......+.+.+.++++.|+.+....+|+..+. ..+-++++.+..++|..|.++++||.+.  ..|
T Consensus       189 ---~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~f~~~~~~~~~~~~~~~~l~~~~~~~~  260 (306)
T KOG0714|consen  189 ---TSNGRE----GSSRSRYLSISIKPGWKEGTKITFPEEGDEEPG-ILPADIEFVVDEKPHPLFSRDGNDLSYSSGYEI  260 (306)
T ss_pred             ---cCCccc----ccCccceeEEeccCCcccccceeccccccccCC-cCcceeEEEEecCCcccccCCCccceeccccee
Confidence               000000    112356788999999999999999999988653 5688999999999999999999999999  999


Q ss_pred             cHHHHhCCCEEEEeccCCeE-EEEeC-CCCCCCcEEEEccCCCCC
Q 013277          355 SYLDAIMGTVVKVKTVEGIS-ELQVP-PGTQPGDVLVLAKKGAPK  397 (446)
Q Consensus       355 sl~eAl~G~~~~i~~ldG~~-~l~i~-~~~~~g~~~~l~g~G~P~  397 (446)
                      ++.+|++|....++++++.. .+.+. ....++....++++|||.
T Consensus       261 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (306)
T KOG0714|consen  261 SLKEALLGVTVFVPTLDGRSYSLSINKDLIEPGEEDVIPGEGLPC  305 (306)
T ss_pred             ehhhhhcCcceeeecccCccccCcccccccCCCceeeecCCCCCC
Confidence            99999999999999999974 34444 457899999999999985

>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress

Probab=99.85  E-value=2.3e-21  Score=155.15  Aligned_cols=80  Identities=34%  Similarity=0.632  Sum_probs=70.4

Q ss_pred             ceEEEEeecHHHHhCCCEEEEeccCC-eEEEEeCCCCCCCcEEEEccCCCCCCCCCCCCCCEEEEEEEEcCCCCCcchHH
Q 013277          347 DLFSTISISYLDAIMGTVVKVKTVEG-ISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRIRYVYSP  425 (446)
Q Consensus       347 dL~~~~~Isl~eAl~G~~~~i~~ldG-~~~l~i~~~~~~g~~~~l~g~G~P~~~~~~~~GdL~v~~~v~~P~~ls~~~~~  425 (446)
                      ||+++++|+++||++|++++|+|+|| .++|+||+++++|++++|+|+|||...+++.+|||||+|+|.||++||++||+
T Consensus         1 DL~~~~~I~l~~al~G~~i~i~~l~g~~~~i~ip~~~~~g~~~~i~g~G~p~~~~~~~~GdL~v~~~V~~P~~ls~~qk~   80 (81)
T PF01556_consen    1 DLYCTIPISLKEALLGGTISIPTLDGKTIKIKIPPGTQPGQQLRIKGKGMPKPKGGGKRGDLIVKFEVEFPKKLSPEQKE   80 (81)
T ss_dssp             EEEEEEEEEHHHHHH-EEEEEE-TTS-EEEEEETST-STT-EEEETTESEEESSSTTSBEEEEEEEEEE--SSTSHHHHH
T ss_pred             CeEEEEEeCHHHHhCCCEEEEECCCCCEEEEeccCccCCCcEEeecCCCCCcCCCCCCcCCEEEEEEEECCCCCCHHHhc
Confidence            89999999999999999999999999 67899999999999999999999998876689999999999999999999998


Q ss_pred             H
Q 013277          426 S  426 (446)
Q Consensus       426 ~  426 (446)
                      |
T Consensus        81 l   81 (81)
T PF01556_consen   81 L   81 (81)
T ss_dssp             H
T ss_pred             C
Confidence            6

The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....

>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.77  E-value=2.7e-19  Score=168.35  Aligned_cols=72  Identities=60%  Similarity=0.980  Sum_probs=68.7

Q ss_pred             CcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhcchhhhhhhhhhcccccee
Q 013277           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVK  147 (446)
Q Consensus        76 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~  147 (446)
                      ..|+|+||||+++|+.++||||||+|+++||||++++ |++.++|++||+||++|+||.+|..||+||+.++.
T Consensus        30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l~  102 (279)
T KOG0716|consen   30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGELGLK  102 (279)
T ss_pred             hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHHH
Confidence            6789999999999999999999999999999999987 88999999999999999999999999999987764

>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=99.73  E-value=4e-17  Score=153.37  Aligned_cols=69  Identities=59%  Similarity=0.862  Sum_probs=64.1

Q ss_pred             ccCcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcc--hHHHHHHHHHHHhhcchhhhhhhhhhcc
Q 013277           74 CASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPG--ATEKFKEISAAYEVLSDDKKRAMYDQYG  142 (446)
Q Consensus        74 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~--~~~~f~~i~~Ay~vL~d~~~r~~yd~~g  142 (446)
                      .+..+||+||||+++|+.+|||+|||++|++||||+++...  +.+.|+.|++||++|+|+.+|+.||+++
T Consensus         3 ~~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~   73 (237)
T COG2214           3 SDLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKIG   73 (237)
T ss_pred             hhhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhhc
Confidence            34679999999999999999999999999999999998643  8899999999999999999999999973

>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.73  E-value=2.1e-18  Score=172.16  Aligned_cols=72  Identities=56%  Similarity=0.953  Sum_probs=67.8

Q ss_pred             CcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc----chHHHHHHHHHHHhhcchhhhhhhhhhcccccee
Q 013277           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEP----GATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVK  147 (446)
Q Consensus        76 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~----~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~  147 (446)
                      +.|||.+|+|+++||++|||+|||++++.||||+..++    .|++.|+.|.+||||||||.+|++||.||++|++
T Consensus         8 e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~   83 (546)
T KOG0718|consen    8 EIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLK   83 (546)
T ss_pred             hhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcccc
Confidence            45899999999999999999999999999999998754    4789999999999999999999999999999987

>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional

Probab=99.71  E-value=3.7e-18  Score=184.05  Aligned_cols=77  Identities=36%  Similarity=0.587  Sum_probs=71.1

Q ss_pred             ecccCcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhhhhccccceee
Q 013277           72 VVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKS  148 (446)
Q Consensus        72 ~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~~  148 (446)
                      .+....+||++|||+++|+.+|||+|||+||++||||+++++.+.++|++|++||+|||||.+|+.||+||..+++.
T Consensus       568 ~~~~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl~~  644 (1136)
T PTZ00341        568 IEIPDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMYNKFGYDGIKG  644 (1136)
T ss_pred             ccCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHhhccccccCC
Confidence            44457899999999999999999999999999999999987778899999999999999999999999999887653

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.70  E-value=4e-17  Score=162.68  Aligned_cols=118  Identities=33%  Similarity=0.696  Sum_probs=94.8

Q ss_pred             ceeecccccCCccccCcc-------eeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeec--------
Q 013277          221 HLETCEVCTGTGAKMGSK-------MRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC--------  285 (446)
Q Consensus       221 ~~~~C~~C~G~G~~~~~~-------~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C--------  285 (446)
                      ..++|++|+|+|.....+       ..+|++|+|+|+++.            .+|+.|+|.|++.+..-.++        
T Consensus       158 ~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i~------------~pC~~C~G~G~v~~~~~i~V~IPaGv~~  225 (371)
T COG0484         158 DPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKIIK------------DPCGKCKGKGRVKKKKSISVNIPAGVDD  225 (371)
T ss_pred             CCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeECC------------CCCCCCCCCCeEeeeeEEEEECCCCCcc
Confidence            678999999999854333       779999999999875            79999999999766533333        


Q ss_pred             ------CCceEE-------------------------------------------------EEeeEEEEEeCCCCCCCCE
Q 013277          286 ------SGEGRI-------------------------------------------------RLKKNIKVKVPPGVSTGSI  310 (446)
Q Consensus       286 ------~G~G~v-------------------------------------------------~~~~~l~V~Ip~G~~~G~~  310 (446)
                            .|.|..                                                 +....++|+||+|++.|++
T Consensus       226 g~~ir~~g~G~~g~~Ggp~GDLyv~i~v~~h~~F~R~g~dL~~~~~Is~~~AalG~~i~vptl~g~~~l~ip~Gtq~G~~  305 (371)
T COG0484         226 GDRIRLSGEGEAGPNGGPAGDLYVFVHVKPHPIFERDGDDLYCEVPISFTEAALGGEIEVPTLDGRVKLKIPAGTQTGEV  305 (371)
T ss_pred             CCEEEEecCcccCCCCCCCccEEEEEEeecCCCeEECCCceEeccccCHHHHhcCCEEEEEecCCCEEEecCCCCccCcE
Confidence                  222222                                                 2334499999999999999


Q ss_pred             EEEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEE
Q 013277          311 LRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFS  350 (446)
Q Consensus       311 i~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~  350 (446)
                      ++|+|+|++..++...|||||+|+|..|..+...+..|+.
T Consensus       306 ~rl~gkG~p~~~~~~~GDl~v~v~v~~P~~ls~~q~~lL~  345 (371)
T COG0484         306 FRLRGKGMPKLRSGGRGDLYVRVKVETPKNLSDEQKELLE  345 (371)
T ss_pred             EEEcCCCccccCCCCcCCEEEEEEEEcCCCCCHHHHHHHH
Confidence            9999999998887778999999999999988877766654

>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []

Probab=99.69  E-value=2.5e-17  Score=125.63  Aligned_cols=62  Identities=53%  Similarity=0.879  Sum_probs=59.1

Q ss_pred             CchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcc--hHHHHHHHHHHHhhcchhhhhhhhh
Q 013277           78 DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPG--ATEKFKEISAAYEVLSDDKKRAMYD  139 (446)
Q Consensus        78 d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~--~~~~f~~i~~Ay~vL~d~~~r~~yd  139 (446)
                      |||+||||+++++.+|||++|+++++.+|||++....  +.+.|..|++||++|+||.+|+.||
T Consensus         1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD   64 (64)
T PF00226_consen    1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD   64 (64)
T ss_dssp             HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred             ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence            6899999999999999999999999999999987655  8899999999999999999999998

Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....

>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.68  E-value=3.3e-17  Score=159.52  Aligned_cols=88  Identities=49%  Similarity=0.762  Sum_probs=75.3

Q ss_pred             CcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhcchhhhhhhhhhccccceeeccCCCC
Q 013277           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGS  154 (446)
Q Consensus        76 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~~~~~~~~  154 (446)
                      ..|||++|||+.+|+.+|||+|||+.|++||||+||+ |.+.++|+++.+||+||+|+.+|+.||++|..+....     
T Consensus         4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~~~~-----   78 (296)
T KOG0691|consen    4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGSSAQ-----   78 (296)
T ss_pred             cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcccch-----
Confidence            5799999999999999999999999999999999994 8899999999999999999999999999997654321     


Q ss_pred             CCCcCCCcCccccccC
Q 013277          155 SAYTTNPFDLFETFFG  170 (446)
Q Consensus       155 ~~~~~~~~d~F~~fFg  170 (446)
                        -..++.++|...|+
T Consensus        79 --~~~d~~~~~r~~f~   92 (296)
T KOG0691|consen   79 --GREDQADGFRKKFG   92 (296)
T ss_pred             --hhhhHHHHHHHHhh
Confidence              01345566666655

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.66  E-value=3.4e-17  Score=163.67  Aligned_cols=72  Identities=51%  Similarity=0.740  Sum_probs=66.2

Q ss_pred             cCcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--cchHHHHHHHHHHHhhcchhhhhhhhhhccccce
Q 013277           75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE--PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGV  146 (446)
Q Consensus        75 ~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~--~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~  146 (446)
                      +.+.||++|||.++|++.|||++||+||++||||+|++  .+++++|+.|+.||+|||||..|+-||..-++-+
T Consensus         6 ~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreqil   79 (508)
T KOG0717|consen    6 KKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQIL   79 (508)
T ss_pred             hhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHHHh
Confidence            45689999999999999999999999999999999986  5789999999999999999999999999766544

>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.62  E-value=3.4e-16  Score=144.04  Aligned_cols=69  Identities=51%  Similarity=0.828  Sum_probs=63.9

Q ss_pred             CcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---cchHHHHHHHHHHHhhcchhhhhhhhhhcccc
Q 013277           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE---PGATEKFKEISAAYEVLSDDKKRAMYDQYGEA  144 (446)
Q Consensus        76 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~---~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~  144 (446)
                      .+|+|+||||.++|++.||++||++|++++|||+++.   .+++++|++++.||+||+|.++|+.||+.|.-
T Consensus        13 ~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~i   84 (264)
T KOG0719|consen   13 KKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSI   84 (264)
T ss_pred             ccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCC
Confidence            4599999999999999999999999999999999963   46889999999999999999999999998753

>PHA03102 Small T antigen; Reviewed

Probab=99.61  E-value=4e-16  Score=138.08  Aligned_cols=67  Identities=25%  Similarity=0.375  Sum_probs=61.9

Q ss_pred             cCchhhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhhhhccccce
Q 013277           77 GDYYATLGVPKSA--SGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGV  146 (446)
Q Consensus        77 ~d~Y~iLgv~~~a--s~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~  146 (446)
                      ..+|++|||+++|  |.+|||+|||++++++|||+++   ..++|++|++||++|+|+.+|..||.+|....
T Consensus         5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg---~~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~~   73 (153)
T PHA03102          5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGG---DEEKMKELNTLYKKFRESVKSLRDLDGEEDSS   73 (153)
T ss_pred             HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCc---hhHHHHHHHHHHHHHhhHHHhccccccCCccc
Confidence            4689999999999  9999999999999999999974   46799999999999999999999999997653

>PRK10767 chaperone protein DnaJ; Provisional

Probab=99.61  E-value=3e-15  Score=152.90  Aligned_cols=119  Identities=34%  Similarity=0.686  Sum_probs=92.4

Q ss_pred             eeecccccCCccccC-----cceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeec-----------
Q 013277          222 LETCEVCTGTGAKMG-----SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC-----------  285 (446)
Q Consensus       222 ~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C-----------  285 (446)
                      ...|+.|+|+|....     ....+|+.|+|+|+++.            ..|+.|+|.|.+.......+           
T Consensus       159 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~  226 (371)
T PRK10767        159 PKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKIIK------------DPCKKCHGQGRVEKEKTLSVKIPAGVDTGDR  226 (371)
T ss_pred             CccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeECC------------CCCCCCCCCceEeeeeeEEEecCCCCCCCcE
Confidence            468999999997532     23568999999999864            68999999998765433222           


Q ss_pred             ---CCce----------EE---------------------------------------EEeeEEEEEeCCCCCCCCEEEE
Q 013277          286 ---SGEG----------RI---------------------------------------RLKKNIKVKVPPGVSTGSILRV  313 (446)
Q Consensus       286 ---~G~G----------~v---------------------------------------~~~~~l~V~Ip~G~~~G~~i~l  313 (446)
                         .|.|          .+                                       ..+..++|+||+|+++|++++|
T Consensus       227 i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~i~v~ip~g~~~g~~~~i  306 (371)
T PRK10767        227 IRLSGEGEAGERGGPAGDLYVQIHVKEHPIFERDGNDLYCEVPISFTTAALGGEIEVPTLDGRVKLKIPEGTQTGKLFRL  306 (371)
T ss_pred             EEEecCccCCCCCCCCcCEEEEEEEeeCCCEEEecCCEEEEEEeCHHHHhCCCeEEEecCCCcEEEEeCCCCCCCCEEEE
Confidence               2221          11                                       1233689999999999999999


Q ss_pred             ccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEEEE
Q 013277          314 VGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTI  352 (446)
Q Consensus       314 ~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~~  352 (446)
                      +|+|++..+++..|||||+|+|..|+.|++++.+|+.++
T Consensus       307 ~g~G~p~~~~~~~GDL~v~~~v~~P~~l~~~~~~ll~~l  345 (371)
T PRK10767        307 RGKGVKSVRSGARGDLYCQVVVETPVNLTKRQKELLEEF  345 (371)
T ss_pred             CCCCcCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence            999999766667899999999999999999998887543

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.59  E-value=2.3e-15  Score=146.22  Aligned_cols=72  Identities=49%  Similarity=0.756  Sum_probs=65.0

Q ss_pred             cCcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc----chHHHHHHHHHHHhhcchhhhhhhhhhcccccee
Q 013277           75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEP----GATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVK  147 (446)
Q Consensus        75 ~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~----~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~  147 (446)
                      ..+|||.||||.++|+..||-||||++|.+||||...++    .++++|..|..|-|||+||++|+.||. |+..++
T Consensus       392 ~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDn-GeDPLD  467 (504)
T KOG0624|consen  392 GKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDN-GEDPLD  467 (504)
T ss_pred             ccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccC-CCCCCC
Confidence            467999999999999999999999999999999998764    378899999999999999999999998 555544

>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.58  E-value=2e-15  Score=137.95  Aligned_cols=70  Identities=43%  Similarity=0.713  Sum_probs=65.5

Q ss_pred             CcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhcchhhhhhhhhhccccc
Q 013277           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAG  145 (446)
Q Consensus        76 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~  145 (446)
                      ..|+||||||+++|+++|||+|||+|.++||||++++ .+.++.|.+|++||+.|+|+..|..|..||...
T Consensus        98 ~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~PD  168 (230)
T KOG0721|consen   98 KFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGNPD  168 (230)
T ss_pred             cCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCCCC
Confidence            4599999999999999999999999999999999987 567788999999999999999999999999754

>PRK14290 chaperone protein DnaJ; Provisional

Probab=99.58  E-value=2.5e-15  Score=152.96  Aligned_cols=120  Identities=31%  Similarity=0.651  Sum_probs=94.3

Q ss_pred             ceeecccccCCccccCc---------ceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeec------
Q 013277          221 HLETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC------  285 (446)
Q Consensus       221 ~~~~C~~C~G~G~~~~~---------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C------  285 (446)
                      ....|+.|+|+|.....         ...+|+.|+|+|+++.            ..|+.|+|.|.+....-.++      
T Consensus       164 ~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~~~V~Ip~G~  231 (365)
T PRK14290        164 KLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIPE------------EKCPRCNGTGTVVVNEDISVKIPKGA  231 (365)
T ss_pred             CCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEcc------------CCCCCCCCceeEEEeeEEEEEECCCC
Confidence            45689999999975322         2468999999999865            78999999998765422222      


Q ss_pred             --------CCce--------EE---------------------------------------EEeeEEEEEeCCCCCCCCE
Q 013277          286 --------SGEG--------RI---------------------------------------RLKKNIKVKVPPGVSTGSI  310 (446)
Q Consensus       286 --------~G~G--------~v---------------------------------------~~~~~l~V~Ip~G~~~G~~  310 (446)
                              .|.|        .+                                       ....+++|+||+|+++|++
T Consensus       232 ~~G~~i~~~g~G~~~~~~~GDL~v~v~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~~~~g~i~V~Ip~g~~~g~~  311 (365)
T PRK14290        232 TDNLRLRVKGKGQSYGGRTGDLYVVLRVNNDPNIQRINDDLYVDQKINFPQAALGGEIEIKLFREKYNLKIPEGTQPGEV  311 (365)
T ss_pred             CCCcEEEEccccCCCCCCCCCEEEEEEEcCCCCEEEecCCEEEEEEeCHHHHhCCCEEEEEcCCceEEEEECCccCCCcE
Confidence                    2222        11                                       2345689999999999999


Q ss_pred             EEEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEEEE
Q 013277          311 LRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTI  352 (446)
Q Consensus       311 i~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~~  352 (446)
                      ++|+|+|++.+++..+|||||+|+|+.|+.|++++.+|+.++
T Consensus       312 iri~g~G~p~~~~~~~GDL~V~~~V~~P~~l~~~~~~ll~~~  353 (365)
T PRK14290        312 LKIKGAGMPHLNGHGSGDLLVRINVEVPKRLTSKQKELIREF  353 (365)
T ss_pred             EEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence            999999999776667899999999999999999999987653

>smart00271 DnaJ DnaJ molecular chaperone homology domain

Probab=99.58  E-value=2.1e-15  Score=113.25  Aligned_cols=57  Identities=65%  Similarity=0.948  Sum_probs=53.4

Q ss_pred             cCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC--CcchHHHHHHHHHHHhhcchhh
Q 013277           77 GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK--EPGATEKFKEISAAYEVLSDDK  133 (446)
Q Consensus        77 ~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~--~~~~~~~f~~i~~Ay~vL~d~~  133 (446)
                      .|||++|||+++++.++||+||+++++.+|||++.  .+.+.+.|.+|++||++|+||.
T Consensus         1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~   59 (60)
T smart00271        1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE   59 (60)
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCC
Confidence            37999999999999999999999999999999997  4678899999999999999985

>cd06257 DnaJ DnaJ domain or J-domain

Probab=99.56  E-value=5.9e-15  Score=108.78  Aligned_cols=54  Identities=70%  Similarity=1.073  Sum_probs=51.3

Q ss_pred             CchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhcch
Q 013277           78 DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSD  131 (446)
Q Consensus        78 d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d  131 (446)
                      |||++|||+++++.++||++|+++++++|||++.. +.+.+.|.+|++||++|+|
T Consensus         1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d   55 (55)
T cd06257           1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD   55 (55)
T ss_pred             ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence            69999999999999999999999999999999976 6788999999999999986

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.

>PRK14284 chaperone protein DnaJ; Provisional

Probab=99.54  E-value=1.5e-14  Score=148.46  Aligned_cols=117  Identities=29%  Similarity=0.679  Sum_probs=90.5

Q ss_pred             eeecccccCCccccC-----cceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeec-----------
Q 013277          222 LETCEVCTGTGAKMG-----SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC-----------  285 (446)
Q Consensus       222 ~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C-----------  285 (446)
                      ...|+.|+|+|....     ....+|+.|+|+|+++.            ..|+.|+|.|.+...+-.++           
T Consensus       175 ~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~  242 (391)
T PRK14284        175 IKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVIT------------DPCSVCRGQGRIKDKRSVHVHIPAGVDSGMR  242 (391)
T ss_pred             CeecCccCCeeEEEEEeceEEEEEECCCCCCCCcccC------------CcCCCCCCcceecceEEEEEEECCCCCCCCE
Confidence            468999999997532     13569999999999865            68999999998754322222           


Q ss_pred             ---CCce----------EE---------------------------------------EE--eeEEEEEeCCCCCCCCEE
Q 013277          286 ---SGEG----------RI---------------------------------------RL--KKNIKVKVPPGVSTGSIL  311 (446)
Q Consensus       286 ---~G~G----------~v---------------------------------------~~--~~~l~V~Ip~G~~~G~~i  311 (446)
                         .|.|          .+                                       ..  ...++|+||+|+++|+++
T Consensus       243 i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tld~g~~i~v~Ip~g~~~g~~~  322 (391)
T PRK14284        243 LKMEGYGDAGQNGAPAGDLYVFIDVEPHPVFERRGDDLILELPIGFVDAALGMKKEIPTLLKEGTCRLTIPEGIQSGTIL  322 (391)
T ss_pred             EEEeccccCCCCCCCCCCEEEEEEEecCCCceeecCCEEEEEEecHHHHhCCCeEEEeecCCCcEEEEEECCccCCCeEE
Confidence               2222          11                                       22  267899999999999999


Q ss_pred             EEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEE
Q 013277          312 RVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFS  350 (446)
Q Consensus       312 ~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~  350 (446)
                      +|+|+|++...+..+|||||+|+|..|+.++.++.+|+.
T Consensus       323 ~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~  361 (391)
T PRK14284        323 KVRGQGFPNVHGKGRGDLLVRISVETPQNLSEEQKELLR  361 (391)
T ss_pred             EECCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHH
Confidence            999999997655678999999999999988887776654

>PRK14282 chaperone protein DnaJ; Provisional

Probab=99.51  E-value=2.3e-14  Score=146.22  Aligned_cols=119  Identities=30%  Similarity=0.595  Sum_probs=92.6

Q ss_pred             ceeecccccCCccccCc---------ceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeec------
Q 013277          221 HLETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC------  285 (446)
Q Consensus       221 ~~~~C~~C~G~G~~~~~---------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C------  285 (446)
                      ....|+.|+|+|.....         ...+|+.|+|+|+++.            ..|+.|+|.|.+....-.++      
T Consensus       168 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~Ip~G~  235 (369)
T PRK14282        168 GYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPG------------EYCHECGGSGRIRRRVRTTVKIPAGV  235 (369)
T ss_pred             CCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCC------------CCCCCCCCceeEEEEEEEEEEeCCCC
Confidence            34689999999975322         2568999999999865            68999999997655322221      


Q ss_pred             --------CCce----------EE----------------------------------------EEeeEEEEEeCCCCCC
Q 013277          286 --------SGEG----------RI----------------------------------------RLKKNIKVKVPPGVST  307 (446)
Q Consensus       286 --------~G~G----------~v----------------------------------------~~~~~l~V~Ip~G~~~  307 (446)
                              .|+|          .+                                        .+.+.++|+||+|+++
T Consensus       236 ~~G~~i~~~g~G~~~~~~~~~GDl~i~i~v~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~i~v~Ip~g~~~  315 (369)
T PRK14282        236 EDGTVLRITGGGNAGYYGGPYGDLYVIVRVRPDPRFKRSGSDLIYDVTIDYLQAILGTTVEVPLPEGGTTMLKIPPGTQP  315 (369)
T ss_pred             CCCCEEEEecccCCCCCCCCCCCEEEEEEEecCCcEEEecCCEEEEEEeCHHHHhCCCEEEEeCCCCcEEEEEeCCCcCC
Confidence                    2222          11                                        2245789999999999


Q ss_pred             CCEEEEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEEE
Q 013277          308 GSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFST  351 (446)
Q Consensus       308 G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~  351 (446)
                      |++++|+|+|++...++.+|||||+|+|+.|+.|++++.+|+.+
T Consensus       316 g~~iri~GkG~p~~~~~~~GDL~V~~~v~~P~~l~~~~~~ll~~  359 (369)
T PRK14282        316 ETVFRLKGKGLPNMRYGRRGDLIVNVHVEIPKRLSREERKLLKE  359 (369)
T ss_pred             CCEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence            99999999999975555689999999999999999999988654

>PRK14298 chaperone protein DnaJ; Provisional

Probab=99.47  E-value=6.1e-14  Score=143.26  Aligned_cols=119  Identities=34%  Similarity=0.625  Sum_probs=91.9

Q ss_pred             eeecccccCCccccCc---------ceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeec-------
Q 013277          222 LETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC-------  285 (446)
Q Consensus       222 ~~~C~~C~G~G~~~~~---------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C-------  285 (446)
                      ...|+.|+|+|.....         ...+|+.|+|+|.++.            ..|+.|+|.|.+...+-..+       
T Consensus       158 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~IppG~~  225 (377)
T PRK14298        158 PKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIE------------SPCPVCSGTGKVRKTRKITVNVPAGAD  225 (377)
T ss_pred             CCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcccC------------CCCCCCCCccEEEEEEEEEecCCCCCC
Confidence            4679999999975322         2678999999998765            68999999998765422222       


Q ss_pred             -------CCce----------EE---------------------------------------EEeeEEEEEeCCCCCCCC
Q 013277          286 -------SGEG----------RI---------------------------------------RLKKNIKVKVPPGVSTGS  309 (446)
Q Consensus       286 -------~G~G----------~v---------------------------------------~~~~~l~V~Ip~G~~~G~  309 (446)
                             .|.|          .+                                       ..+..++|+||+|+++|+
T Consensus       226 ~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~i~v~ip~g~~~g~  305 (377)
T PRK14298        226 SGLRLKLSGEGEAGSPGAPSGDLYIVLHVKEHDYFERVGDDIISEIPISFTQAALGADIMVPTLYGKVKMNIPPGTQTHS  305 (377)
T ss_pred             CCCEEEEecccCCCCCCCCCcCEEEEEEEecCCCeEEEcCcEEEEEEeCHHHHhCCCeEEEecCCCCEEEEeCCCcccCC
Confidence                   2221          11                                       123348999999999999


Q ss_pred             EEEEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEEEE
Q 013277          310 ILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTI  352 (446)
Q Consensus       310 ~i~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~~  352 (446)
                      +++|+|+|++..++...|||||+|+|+.|+.|++++.+|+.++
T Consensus       306 ~lri~g~G~p~~~~~~~GDL~V~~~V~~P~~ls~~~~~ll~~l  348 (377)
T PRK14298        306 VFRLKDKGMPRLHGHGKGDQLVKVIVKTPTKLTQEQKELLREF  348 (377)
T ss_pred             EEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence            9999999999766556899999999999999999998886543

>PRK14285 chaperone protein DnaJ; Provisional

Probab=99.47  E-value=6.8e-14  Score=142.42  Aligned_cols=118  Identities=24%  Similarity=0.528  Sum_probs=91.7

Q ss_pred             eeecccccCCccccC-----cceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeec-----------
Q 013277          222 LETCEVCTGTGAKMG-----SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC-----------  285 (446)
Q Consensus       222 ~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C-----------  285 (446)
                      ...|+.|+|+|....     ....+|+.|+|+|.++.            ..|+.|+|.|.+.+..-.++           
T Consensus       163 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~  230 (365)
T PRK14285        163 PSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKIIS------------NPCKSCKGKGSLKKKETIELKIPAGIDDNQQ  230 (365)
T ss_pred             CccCCCccCceeEEecCceeEEeeecCCCCCcccccC------------CCCCCCCCCCEEeccEEEEEEECCCCCCCCE
Confidence            467999999996532     23679999999999865            68999999998765422222           


Q ss_pred             ---CCc----------eEE----------------------------------------EEeeEEEEEeCCCCCCCCEEE
Q 013277          286 ---SGE----------GRI----------------------------------------RLKKNIKVKVPPGVSTGSILR  312 (446)
Q Consensus       286 ---~G~----------G~v----------------------------------------~~~~~l~V~Ip~G~~~G~~i~  312 (446)
                         .|.          |..                                        .+.+.++|+||+|+++|++++
T Consensus       231 i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~dL~~~~~Isl~eAl~G~~~~i~tldG~~v~V~Ip~g~~~g~~ir  310 (365)
T PRK14285        231 IKMRGKGSVNPDNQQYGDLYIKILIKPHKIFKRNGKDLYATLPISFTQAALGKEIKIQTIASKKIKIKIPKGTENDEQII  310 (365)
T ss_pred             EEEeeccccCCCCCCCCCEEEEEEEecCCCeEEeccceEEEEecCHHHHhCCCEEEEECCCCCEEEEEeCCCcCCCcEEE
Confidence               111          221                                        233579999999999999999


Q ss_pred             EccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEEE
Q 013277          313 VVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFST  351 (446)
Q Consensus       313 l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~  351 (446)
                      |+|+|++.+.+...|||||+|+|+.|+.|++++..|+..
T Consensus       311 l~GkG~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~~l~~  349 (365)
T PRK14285        311 IKNEGMPILHTEKFGNLILIIKIKTPKNLNSNAIKLLEN  349 (365)
T ss_pred             ECCCCccCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence            999999976555579999999999999999988776543

>PRK14294 chaperone protein DnaJ; Provisional

Probab=99.46  E-value=7.5e-14  Score=142.29  Aligned_cols=118  Identities=31%  Similarity=0.605  Sum_probs=91.8

Q ss_pred             eeecccccCCccccC-----cceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeec-----------
Q 013277          222 LETCEVCTGTGAKMG-----SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC-----------  285 (446)
Q Consensus       222 ~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C-----------  285 (446)
                      ...|+.|+|+|....     ....+|+.|+|+|+.+.            ..|+.|+|.|.+....-.++           
T Consensus       161 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~  228 (366)
T PRK14294        161 PTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVIV------------SPCKTCHGQGRVRVSKTVQVKIPAGVDTGSR  228 (366)
T ss_pred             cccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeecC------------cCCCCCCCceEeecceeEEEecCCCCcCCcE
Confidence            468999999997532     13679999999999864            68999999998765322221           


Q ss_pred             ---CCce----------EE---------------------------------------EEeeEEEEEeCCCCCCCCEEEE
Q 013277          286 ---SGEG----------RI---------------------------------------RLKKNIKVKVPPGVSTGSILRV  313 (446)
Q Consensus       286 ---~G~G----------~v---------------------------------------~~~~~l~V~Ip~G~~~G~~i~l  313 (446)
                         .|.|          .+                                       ..+..++|.||+|+++|++++|
T Consensus       229 i~~~g~G~~~~~~~~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~~v~ip~g~~~g~~iri  308 (366)
T PRK14294        229 LRLRGEGEAGVRGGPPGDLYVFLTVEPHEFFERDGNDVHCKVPISFVQAALGAQIEVPTLEGERELKIPKGTQPGDIFRF  308 (366)
T ss_pred             EEEccCccCCCCCCCCCcEEEEEEEccCCcceecCCCEEEEEEeCHHHHhCCCeEEEECCCCcEEEEECCCcCCCCEEEE
Confidence               2222          11                                       1234579999999999999999


Q ss_pred             ccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEEE
Q 013277          314 VGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFST  351 (446)
Q Consensus       314 ~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~  351 (446)
                      +|+|++...+..+|||||+|+|..|+.|++++.+|+..
T Consensus       309 ~G~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~  346 (366)
T PRK14294        309 KGKGIPSLRGGGRGDQIIEVEVKVPTRLTKKQEELLTE  346 (366)
T ss_pred             CCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence            99999976655789999999999999999999888754

>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation

Probab=99.44  E-value=1.6e-13  Score=105.29  Aligned_cols=65  Identities=49%  Similarity=1.107  Sum_probs=54.6

Q ss_pred             cccccCCccccCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEe-ceeeeecCCce
Q 013277          225 CEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVI-SEYCRKCSGEG  289 (446)
Q Consensus       225 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-~~~C~~C~G~G  289 (446)
                      |+.|+|+|++......+|+.|+|+|+++...+.+++++++..+|+.|+|+|+++ +++|+.|+|.|
T Consensus         1 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i~~~~C~~C~G~g   66 (66)
T PF00684_consen    1 CPKCNGTGAKPGKKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKIIEKDPCKTCKGSG   66 (66)
T ss_dssp             -CCCTTTSB-STTT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-TSSB-SSSTTSS
T ss_pred             CCcCCCcccCCCCCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEECCCCCCCCCCcC
Confidence            899999999988899999999999999988888888888899999999999999 99999999976

DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.

>PRK14300 chaperone protein DnaJ; Provisional

Probab=99.44  E-value=1.6e-13  Score=140.09  Aligned_cols=117  Identities=26%  Similarity=0.554  Sum_probs=89.5

Q ss_pred             ceeecccccCCccccC-----cceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeec----------
Q 013277          221 HLETCEVCTGTGAKMG-----SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC----------  285 (446)
Q Consensus       221 ~~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C----------  285 (446)
                      ....|+.|+|+|....     ....+|+.|+|+|.++.            ..|+.|+|.|++....-.++          
T Consensus       161 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~  228 (372)
T PRK14300        161 TVTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQIIK------------NPCKKCHGMGRYHKQRNLSVNIPAGVENGT  228 (372)
T ss_pred             CCccCCCccCeEEEEEeeceEEEEEeCCCCCccceEeC------------CCCCCCCCceEEEeeEEEEEEECCCCCCCc
Confidence            3468999999997532     13568999999999875            68999999999755322222          


Q ss_pred             ----CCc----------eEE----------------------------------------EEeeEEEEEeCCCCCCCCEE
Q 013277          286 ----SGE----------GRI----------------------------------------RLKKNIKVKVPPGVSTGSIL  311 (446)
Q Consensus       286 ----~G~----------G~v----------------------------------------~~~~~l~V~Ip~G~~~G~~i  311 (446)
                          .|.          |.+                                        .+.+.++|+||+|+++|+++
T Consensus       229 ~i~l~g~G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~Dl~~~~~Isl~~Al~G~~~~i~~ldg~~i~v~Ip~g~~~g~~i  308 (372)
T PRK14300        229 RIRHTGEGEAGIRGGNSGDLYVDIAIKPHDIYKVDGANLHCKLPISFVNAALGGEIEVPVIEGGKVNLTIPAGTQNGDQL  308 (372)
T ss_pred             EEEEeccccCCCCCCCCCCEEEEEEECCCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCCCEEEEEECCccCCCcEE
Confidence                121          222                                        12357999999999999999


Q ss_pred             EEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceE
Q 013277          312 RVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLF  349 (446)
Q Consensus       312 ~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~  349 (446)
                      +|+|+|++.+++..+|||||+|+|+.|..|+.++..|+
T Consensus       309 ri~g~G~p~~~~~~~GDL~V~~~v~~P~~ls~~qk~~l  346 (372)
T PRK14300        309 RLRSKGMSKMRSTIRGDMLTHIHVEVPKNLSKRQRELL  346 (372)
T ss_pred             EECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHH
Confidence            99999999766567899999999999988776665554

>PRK14301 chaperone protein DnaJ; Provisional

Probab=99.43  E-value=1.6e-13  Score=140.04  Aligned_cols=118  Identities=29%  Similarity=0.562  Sum_probs=90.0

Q ss_pred             ceeecccccCCccccC-----cceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeec----------
Q 013277          221 HLETCEVCTGTGAKMG-----SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC----------  285 (446)
Q Consensus       221 ~~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C----------  285 (446)
                      ....|+.|+|+|....     ....+|+.|+|+|+++.            ..|+.|+|.|.+.+..-.++          
T Consensus       160 ~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~  227 (373)
T PRK14301        160 SPETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVIT------------HPCPKCKGSGIVQQTRELKVRIPAGVDTGS  227 (373)
T ss_pred             CCcccCCccCeeEEEEEeeeEEEEEeCCCCCceeeecC------------CCCCCCCCCceeccceEEEEEeCCCCcCCC
Confidence            3467999999997532     23679999999999865            68999999998755322221          


Q ss_pred             ----CCc----------eEE---------------------------------------EEeeEEEEEeCCCCCCCCEEE
Q 013277          286 ----SGE----------GRI---------------------------------------RLKKNIKVKVPPGVSTGSILR  312 (446)
Q Consensus       286 ----~G~----------G~v---------------------------------------~~~~~l~V~Ip~G~~~G~~i~  312 (446)
                          .|.          |.+                                       ..+..++|+||+|+++|++++
T Consensus       228 ~i~~~g~G~~~~~~~~~GDLiv~i~v~~h~~f~r~G~DL~~~~~Isl~eAl~G~~~~v~tldG~i~v~ip~g~~~g~~~r  307 (373)
T PRK14301        228 RLRLRGEGEPGVHGGPPGDLYVVITVEDDKIFQRQGQDLVVTQEISFVQAALGDRIEVPTLDDPVTLDIPKGTQSGEVFR  307 (373)
T ss_pred             EEEEeccccCCCCCCCCcCEEEEEEEEECCCceeecCcEEEEEEecHHHHhCCCeEEEecCCccEEEEECCCcCCCcEEE
Confidence                121          221                                       123448999999999999999


Q ss_pred             EccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEE
Q 013277          313 VVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFS  350 (446)
Q Consensus       313 l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~  350 (446)
                      |+|+|++...+..+|||||+|+|..|+.++.++.+|+.
T Consensus       308 i~g~G~p~~~~~~~GDL~I~~~V~~P~~l~~~q~~~l~  345 (373)
T PRK14301        308 LRGKGLPYLGSSQKGDLLVEVSVVTPTKLTKRQEELLR  345 (373)
T ss_pred             EcCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHH
Confidence            99999997665668999999999999888877766654

>PRK14288 chaperone protein DnaJ; Provisional

Probab=99.42  E-value=3.1e-13  Score=137.82  Aligned_cols=117  Identities=23%  Similarity=0.511  Sum_probs=89.0

Q ss_pred             ceeecccccCCccccC-----cceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeec----------
Q 013277          221 HLETCEVCTGTGAKMG-----SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC----------  285 (446)
Q Consensus       221 ~~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C----------  285 (446)
                      ....|+.|+|+|....     ....+|+.|+|+|+++.            ..|+.|+|.|.+....-.+.          
T Consensus       155 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~IP~G~~~G~  222 (369)
T PRK14288        155 ALETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKIIK------------TPCQACKGKTYILKDEEIDAIIPEGIDDQN  222 (369)
T ss_pred             CCcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEcc------------ccCccCCCcceEEEEEEEEEecCCCCCCCC
Confidence            4578999999997532     22568999999999865            68999999998765432222          


Q ss_pred             ----CCceE---------E----------------------------------------EEeeEEEEEeCCCCCCCCEEE
Q 013277          286 ----SGEGR---------I----------------------------------------RLKKNIKVKVPPGVSTGSILR  312 (446)
Q Consensus       286 ----~G~G~---------v----------------------------------------~~~~~l~V~Ip~G~~~G~~i~  312 (446)
                          .|.|.         +                                        .+.+.++|+||+|+++|++++
T Consensus       223 ~i~l~g~G~~~~~~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~v~tLdG~~l~i~i~~~~~~g~~~~  302 (369)
T PRK14288        223 RMVLKNKGNEYEKGKRGDLYLEARVKEDEHFKREGCDLFIEAPVFFTTIALGHTIKVPSLKGDELELKIPRNARDRQTFA  302 (369)
T ss_pred             EEEEccCccCCCCCCCCCEEEEEEEEECCCcEEeCCEEEEEEecCHHHHhcCCEEEeecCCCCEEEEEeCCCCCCCcEEE
Confidence                22211         1                                        224568999999999999999


Q ss_pred             EccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceE
Q 013277          313 VVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLF  349 (446)
Q Consensus       313 l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~  349 (446)
                      |+|+|++.+.+...|||||+|+|+.|+.++.+...++
T Consensus       303 i~g~G~p~~~~~~~GDL~v~~~v~~P~~ls~~q~~~l  339 (369)
T PRK14288        303 FRNEGVKHPESSYRGSLIVELQVIYPKSLNKEQQELL  339 (369)
T ss_pred             EcCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHH
Confidence            9999999765445799999999999988877765544

>PRK14278 chaperone protein DnaJ; Provisional

Probab=99.41  E-value=3.3e-13  Score=138.01  Aligned_cols=117  Identities=29%  Similarity=0.601  Sum_probs=88.7

Q ss_pred             ceeecccccCCccccCc---------ceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeec------
Q 013277          221 HLETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC------  285 (446)
Q Consensus       221 ~~~~C~~C~G~G~~~~~---------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C------  285 (446)
                      ....|+.|+|+|.....         ...+|+.|+|+|.++.            .+|+.|+|.|.+...+-.++      
T Consensus       155 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~~~V~Ip~G~  222 (378)
T PRK14278        155 KPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIP------------DPCHECAGDGRVRARREITVKIPAGV  222 (378)
T ss_pred             CceecCCccCceEEEEEEeccceeEEEEEECCCCCccceeeC------------CCCCCCCCceeEecceEEEEEECCCC
Confidence            34689999999975322         2568999999999865            68999999998765422222      


Q ss_pred             --------CCc----------eEE----------------------------------------EEeeEEEEEeCCCCCC
Q 013277          286 --------SGE----------GRI----------------------------------------RLKKNIKVKVPPGVST  307 (446)
Q Consensus       286 --------~G~----------G~v----------------------------------------~~~~~l~V~Ip~G~~~  307 (446)
                              .|.          |.+                                        .+.+.++|+||+|+++
T Consensus       223 ~~G~~i~~~g~G~~~~~~~~~GDL~v~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tld~~~i~v~ip~g~~~  302 (378)
T PRK14278        223 GDGMRIRLAAQGEVGPGGGPAGDLYVEVHEQPHDVFVRDGDDLHCTVSVPMVDAALGTTVTVEAILDGPSEITIPPGTQP  302 (378)
T ss_pred             CCCcEEEEccCcCCCCCCCCCCCEEEEEEECcCCCEEEcCCCEEEEEecCHHHHhcCCeEEEecCCCCeEEEEeCCCcCC
Confidence                    221          222                                        1256789999999999


Q ss_pred             CCEEEEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceE
Q 013277          308 GSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLF  349 (446)
Q Consensus       308 G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~  349 (446)
                      |++++|+|+|++...++..|||||+|+|..|..++.+...|+
T Consensus       303 g~~lrl~g~G~p~~~~~~~GDL~V~~~V~~P~~Ls~~qk~~l  344 (378)
T PRK14278        303 GSVITLRGRGMPHLRSGGRGDLHAHVEVVVPTRLDHEDIELL  344 (378)
T ss_pred             CcEEEECCCCCCCCCCCCCCCEEEEEEEEcCCCCCHHHHHHH
Confidence            999999999999765566899999999999887666655443

>PRK14286 chaperone protein DnaJ; Provisional

Probab=99.41  E-value=3.3e-13  Score=137.71  Aligned_cols=116  Identities=32%  Similarity=0.550  Sum_probs=88.5

Q ss_pred             eeecccccCCccccC-----cceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeee------------
Q 013277          222 LETCEVCTGTGAKMG-----SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRK------------  284 (446)
Q Consensus       222 ~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~------------  284 (446)
                      ...|+.|+|+|....     ....+|+.|+|+|+++.            ..|+.|+|.|.+.+..-..            
T Consensus       167 ~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~  234 (372)
T PRK14286        167 PTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVIS------------NPCKTCGGQGLQEKRRTINIKIPPGVETGSR  234 (372)
T ss_pred             CccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEec------------ccCCCCCCCcEEecceEEEEEECCCCCCCCE
Confidence            467999999997532     23668999999999875            6899999999876532111            


Q ss_pred             --cCCc----------eEE----------------------------------------EEeeEEEEEeCCCCCCCCEEE
Q 013277          285 --CSGE----------GRI----------------------------------------RLKKNIKVKVPPGVSTGSILR  312 (446)
Q Consensus       285 --C~G~----------G~v----------------------------------------~~~~~l~V~Ip~G~~~G~~i~  312 (446)
                        ..|.          |.+                                        .+.+.++|+||+|+++|++++
T Consensus       235 i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~i~v~ip~g~~~g~~~r  314 (372)
T PRK14286        235 LKVSGEGEAGPNGGPHGDLYVVTHIKKHELFERQGNDLILVRKISLAQAILGAEIEVPTIDGKKAKMKIPEGTESGQVFR  314 (372)
T ss_pred             EEECCccccCCCCCCCceEEEEEEEccCCCEEEecCCEEEEEEECHHHHhCCCEEEEeCCCCCEEEEEeCCccCCCcEEE
Confidence              1221          222                                        124568999999999999999


Q ss_pred             EccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceE
Q 013277          313 VVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLF  349 (446)
Q Consensus       313 l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~  349 (446)
                      |+|+|++..++...|||||+|+|..|..++.++.+|+
T Consensus       315 i~G~G~P~~~~~~~GDL~V~~~V~~P~~Ls~~qk~~l  351 (372)
T PRK14286        315 LKGHGMPYLGAYGKGDQHVIVKIEIPKKITRRQRELI  351 (372)
T ss_pred             ECCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHH
Confidence            9999999765556899999999999987777666554

>PRK14287 chaperone protein DnaJ; Provisional

Probab=99.41  E-value=2.8e-13  Score=138.24  Aligned_cols=119  Identities=30%  Similarity=0.630  Sum_probs=90.9

Q ss_pred             ceeecccccCCccccCc---------ceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeec------
Q 013277          221 HLETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC------  285 (446)
Q Consensus       221 ~~~~C~~C~G~G~~~~~---------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C------  285 (446)
                      ....|+.|+|+|.....         ...+|+.|+|+|.++.            ..|..|+|.|.+.......+      
T Consensus       154 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~Ip~G~  221 (371)
T PRK14287        154 KPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIK------------QKCATCGGKGKVRKRKKINVKVPAGI  221 (371)
T ss_pred             CCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCcccc------------ccCCCCCCeeEEeeeEEEEEEECCcC
Confidence            34679999999975322         2568999999999865            68999999998754432222      


Q ss_pred             --------CCce----------EE---------------------------------------EEeeEEEEEeCCCCCCC
Q 013277          286 --------SGEG----------RI---------------------------------------RLKKNIKVKVPPGVSTG  308 (446)
Q Consensus       286 --------~G~G----------~v---------------------------------------~~~~~l~V~Ip~G~~~G  308 (446)
                              .|.|          .+                                       ..+..++|+||+|+++|
T Consensus       222 ~~G~~i~~~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldg~i~v~ip~g~~~g  301 (371)
T PRK14287        222 DHGQQLRVSGQGEAGVNGGPPGDLYVVFNVKPHEFFERDGDDIYCEMPLTFPQVALGDEIEVPTLNGKVKLKIPAGTQTG  301 (371)
T ss_pred             CCCCEEEEccCCcCCCCCCCCccEEEEEEEecCCCEEEecCCeEEEEeccHHHHhCCCEEEEEcCCCCEEEEECCCccCC
Confidence                    2221          11                                       12345899999999999


Q ss_pred             CEEEEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEEE
Q 013277          309 SILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFST  351 (446)
Q Consensus       309 ~~i~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~  351 (446)
                      ++++|+|+|++...++..|||||+|+|..|+.++++...|+.+
T Consensus       302 ~~~ri~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~  344 (371)
T PRK14287        302 TSFRLRGKGVPNVHGRGQGDQHVQVRVVTPKNLTEKEKELMRE  344 (371)
T ss_pred             cEEEEcCCCccCCCCCCCCCEEEEEEEEcCCCCCHHHHHHHHH
Confidence            9999999999976656689999999999999988888766543

>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.40  E-value=1.3e-13  Score=128.48  Aligned_cols=70  Identities=41%  Similarity=0.772  Sum_probs=66.7

Q ss_pred             ecccCcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhhhhc
Q 013277           72 VVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQY  141 (446)
Q Consensus        72 ~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~  141 (446)
                      ..+...|.|++|||+++|+..||++|||+||+++|||+++++++.+.|..|.+||++|.|.+.|..||-+
T Consensus        28 LYCG~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd~e~rt~ydya   97 (329)
T KOG0722|consen   28 LYCGAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKDNETRTQYDYA   97 (329)
T ss_pred             hcccchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccchhhHHhHHHH
Confidence            6677789999999999999999999999999999999999999999999999999999999999999965

>PRK14279 chaperone protein DnaJ; Provisional

Probab=99.40  E-value=4.6e-13  Score=137.51  Aligned_cols=116  Identities=29%  Similarity=0.606  Sum_probs=87.3

Q ss_pred             ceeecccccCCccccCc-----ceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeec----------
Q 013277          221 HLETCEVCTGTGAKMGS-----KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC----------  285 (446)
Q Consensus       221 ~~~~C~~C~G~G~~~~~-----~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C----------  285 (446)
                      ....|+.|+|+|.....     ...+|+.|+|+|+++.            ..|..|+|.|.+.+.+-.++          
T Consensus       189 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i~------------~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~  256 (392)
T PRK14279        189 SPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSIIE------------DPCEECKGTGVTTRTRTINVRIPPGVEDGQ  256 (392)
T ss_pred             CCCCCCCCcceEEEEEEecceEEEEecCCCCceeEEeC------------CcCCCCCCCeEEEEeeeeEEEeCCCCCCCc
Confidence            35789999999975332     2579999999999875            68999999998765322221          


Q ss_pred             ----CCc----------eEE---------------------------------------EEeeEEEEEeCCCCCCCCEEE
Q 013277          286 ----SGE----------GRI---------------------------------------RLKKNIKVKVPPGVSTGSILR  312 (446)
Q Consensus       286 ----~G~----------G~v---------------------------------------~~~~~l~V~Ip~G~~~G~~i~  312 (446)
                          .|.          |.+                                       ..+..++|+||+|+++|++++
T Consensus       257 ~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~~ldg~i~v~Ip~g~~~g~~ir  336 (392)
T PRK14279        257 RIRLAGQGEAGLRGAPSGDLYVTVHVRPDKVFGRDGDDLTVTVPVSFTELALGSTLSVPTLDGPVGVKVPAGTADGRILR  336 (392)
T ss_pred             EEEEeCCccCCCCCCCCCCEEEEEEEecCCcceeecCcEEEEEEccHHHHcCCceEEEEcCCceEEEEECCCCCCCCEEE
Confidence                121          222                                       123458999999999999999


Q ss_pred             EccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceE
Q 013277          313 VVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLF  349 (446)
Q Consensus       313 l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~  349 (446)
                      |+|+|++.. ++..|||||+|+|..|+.+..+...|+
T Consensus       337 i~g~G~p~~-~~~~GDL~I~~~v~~P~~Ls~~q~~~l  372 (392)
T PRK14279        337 VRGRGVPKR-SGGAGDLLVTVKVAVPPNLDGAAAEAL  372 (392)
T ss_pred             ECCCCCCCC-CCCCCCEEEEEEEECCCCCCHHHHHHH
Confidence            999999964 456899999999999987666555443

>PRK14276 chaperone protein DnaJ; Provisional

Probab=99.40  E-value=3.7e-13  Score=137.77  Aligned_cols=116  Identities=25%  Similarity=0.561  Sum_probs=87.6

Q ss_pred             eeecccccCCccccCc---------ceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeec-------
Q 013277          222 LETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC-------  285 (446)
Q Consensus       222 ~~~C~~C~G~G~~~~~---------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C-------  285 (446)
                      ...|+.|+|+|.....         ...+|+.|+|+|+++.            ..|+.|+|.|.+.+....++       
T Consensus       163 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~~~~~~~l~V~Ip~G~~  230 (380)
T PRK14276        163 PVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIK------------EPCQTCHGTGHEKQAHTVSVKIPAGVE  230 (380)
T ss_pred             CccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCcccc------------CCCCCCCCceEEEEEEEEEEEeCCCcc
Confidence            4679999999975322         2568999999999875            68999999998755422222       


Q ss_pred             -------CCc----------eEE---------------------------------------EEeeEEEEEeCCCCCCCC
Q 013277          286 -------SGE----------GRI---------------------------------------RLKKNIKVKVPPGVSTGS  309 (446)
Q Consensus       286 -------~G~----------G~v---------------------------------------~~~~~l~V~Ip~G~~~G~  309 (446)
                             .|.          |.+                                       ..+..++|+||+|+++|+
T Consensus       231 ~G~~i~l~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tldg~i~v~ip~g~~~g~  310 (380)
T PRK14276        231 TGQQIRLQGQGEAGFNGGPYGDLYVVFRVEPSKKFERDGSTIYYTLPISFVQAALGDTVEVPTVHGDVELKIPAGTQTGK  310 (380)
T ss_pred             CCcEEEEeccccCCCCCCCCcCEEEEEEEEECcceeeecceEEEEEecCHHHHhCCCeEEEEcCCCcEEEEECCCCCCCC
Confidence                   121          221                                       123458999999999999


Q ss_pred             EEEEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceE
Q 013277          310 ILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLF  349 (446)
Q Consensus       310 ~i~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~  349 (446)
                      +++|+|+|++...+..+|||||+|+|..|..+..+...++
T Consensus       311 ~~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~~l  350 (380)
T PRK14276        311 KFRLRGKGAPKLRGGGNGDQHVTVNIVTPTKLNDAQKEAL  350 (380)
T ss_pred             EEEECCCCcCCCCCCCCCCEEEEEEEECCCCCCHHHHHHH
Confidence            9999999999765566899999999999987766665443

>PRK14281 chaperone protein DnaJ; Provisional

Probab=99.39  E-value=4.9e-13  Score=137.61  Aligned_cols=117  Identities=33%  Similarity=0.685  Sum_probs=88.1

Q ss_pred             ceeecccccCCccccCc---------ceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeec------
Q 013277          221 HLETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC------  285 (446)
Q Consensus       221 ~~~~C~~C~G~G~~~~~---------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C------  285 (446)
                      ....|+.|+|+|.....         ...+|+.|+|+|+++.            ..|+.|+|.|.+....-.++      
T Consensus       178 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~~~V~Ip~G~  245 (397)
T PRK14281        178 ATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVK------------DRCPACYGEGIKQGEVTVKVTVPAGV  245 (397)
T ss_pred             CCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeC------------CCCCCCCCCccEecceEEEEecCCCC
Confidence            35689999999975322         2568999999999875            68999999998765422222      


Q ss_pred             --------CCceE----------E---------------------------------------EEeeEEEEEeCCCCCCC
Q 013277          286 --------SGEGR----------I---------------------------------------RLKKNIKVKVPPGVSTG  308 (446)
Q Consensus       286 --------~G~G~----------v---------------------------------------~~~~~l~V~Ip~G~~~G  308 (446)
                              .|.|.          +                                       ..+..++|+||+|+++|
T Consensus       246 ~~G~~i~~~g~G~~~~~~~~~GDL~i~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldg~i~v~ip~g~~~G  325 (397)
T PRK14281        246 QDGNYLTLRGQGNAGPRGGAPGDLIVVIEEKPHELFVRNGDDVIYNLAVSYPDLVLGTKVEVPTLDGAVKLTIPAGTQPE  325 (397)
T ss_pred             CCCCEEEEecccccCCCCCCCCcEEEEEEEcCCCCeEEecCCEEEEEEecHHHHhcCCeEEeecCCccEEEEeCCccCCC
Confidence                    22211          1                                       12345899999999999


Q ss_pred             CEEEEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceE
Q 013277          309 SILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLF  349 (446)
Q Consensus       309 ~~i~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~  349 (446)
                      ++++|+|+|++..+++..|||||+|+|..|..++.++..|+
T Consensus       326 ~~~ri~g~G~P~~~~~~~GDL~V~~~V~~P~~Ls~~qk~~l  366 (397)
T PRK14281        326 TMLRIPGKGIGHLRGSGRGDQYVRVNVFVPKEVSHQDKELL  366 (397)
T ss_pred             cEEEEcCCCCCCCCCCCCCCEEEEEEEEcCCCCCHHHHHHH
Confidence            99999999999766567899999999999887666555443

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=99.39  E-value=4.6e-13  Score=136.06  Aligned_cols=116  Identities=33%  Similarity=0.728  Sum_probs=88.6

Q ss_pred             eeecccccCCccccCc---------ceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeec-------
Q 013277          222 LETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC-------  285 (446)
Q Consensus       222 ~~~C~~C~G~G~~~~~---------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C-------  285 (446)
                      ...|..|+|+|.....         ...+|+.|+|+|++++            ..|+.|+|.|.+....-...       
T Consensus       160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~Ip~G~~  227 (354)
T TIGR02349       160 PKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIK------------EPCSTCKGKGRVKERKTITVKIPAGVD  227 (354)
T ss_pred             CccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecC------------CCCCCCCCCcEecccceEEEEECCCCC
Confidence            5679999999964322         2569999999999865            67999999998755322111       


Q ss_pred             -------CCce----------EE---------------------------------------EEeeEEEEEeCCCCCCCC
Q 013277          286 -------SGEG----------RI---------------------------------------RLKKNIKVKVPPGVSTGS  309 (446)
Q Consensus       286 -------~G~G----------~v---------------------------------------~~~~~l~V~Ip~G~~~G~  309 (446)
                             .|.|          .+                                       ..+..++|.||+|+++|+
T Consensus       228 ~G~~i~~~g~G~~~~~~~~~GDl~v~i~v~~h~~f~r~g~DL~~~~~isl~eAl~G~~~~i~~ldG~i~v~ip~g~~~g~  307 (354)
T TIGR02349       228 TGQRLRVSGKGNAGENGGPNGDLYVVIRVKPHKIFERDGNDLYIEVPISFTQAILGGEIEVPTLDGDVKLKIPAGTQSGT  307 (354)
T ss_pred             CCCEEEEecCccCCCCCCCCCCEEEEEEEecCcceEEecCCEEEEEEeCHHHHhCCCeEEEecCCceEEEEECCcccCCc
Confidence                   2222          11                                       112368999999999999


Q ss_pred             EEEEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceE
Q 013277          310 ILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLF  349 (446)
Q Consensus       310 ~i~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~  349 (446)
                      +++|+|+|++...+..+|||||+|+|..|+.+++++.+++
T Consensus       308 ~~~i~g~G~p~~~~~~~GDL~i~~~v~~P~~l~~~~~~~l  347 (354)
T TIGR02349       308 VFRLKGKGVPRLRGNGRGDLLVTVKVETPKNLSKEQKELL  347 (354)
T ss_pred             EEEECCCCcCCCCCCCCCCEEEEEEEECCCCCCHHHHHHH
Confidence            9999999999766567899999999999998888876654

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.38  E-value=4e-13  Score=133.52  Aligned_cols=90  Identities=41%  Similarity=0.670  Sum_probs=72.4

Q ss_pred             ccCcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--cchHHHHHHHHHHHhhcchhhhhhhhhhccccceeeccC
Q 013277           74 CASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE--PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVG  151 (446)
Q Consensus        74 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~--~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~~~~~  151 (446)
                      ...+|||.|||+.++|+..|||+|||++|+.+|||++..  .+++.+|+++.+||.+|+||.+|..||.- .. +.....
T Consensus       370 SkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg-~d-le~~~~  447 (486)
T KOG0550|consen  370 SKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSG-QD-LEEVGS  447 (486)
T ss_pred             hhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhcccc-cc-hhhhcC
Confidence            346799999999999999999999999999999999864  57889999999999999999999999983 11 111111


Q ss_pred             CCCCCCcCCCcCccccc
Q 013277          152 GGSSAYTTNPFDLFETF  168 (446)
Q Consensus       152 ~~~~~~~~~~~d~F~~f  168 (446)
                      +   +-+.+|+++|..|
T Consensus       448 ~---~a~~dp~~~~~a~  461 (486)
T KOG0550|consen  448 G---GAGFDPFNIFRAF  461 (486)
T ss_pred             C---CcCcChhhhhhhc
Confidence            1   1245778877766

>PRK14280 chaperone protein DnaJ; Provisional

Probab=99.37  E-value=9.2e-13  Score=134.69  Aligned_cols=117  Identities=33%  Similarity=0.645  Sum_probs=87.1

Q ss_pred             ceeecccccCCccccC---------cceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeec------
Q 013277          221 HLETCEVCTGTGAKMG---------SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC------  285 (446)
Q Consensus       221 ~~~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C------  285 (446)
                      ....|+.|+|+|....         ....+|+.|+|+|.++.            ..|+.|+|.|.+.+..-..+      
T Consensus       159 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~i~V~Ip~G~  226 (376)
T PRK14280        159 SKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIK------------EKCPTCHGKGKVRKRKKINVKIPAGV  226 (376)
T ss_pred             CCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCceec------------CCCCCCCCceEEEEEEEEEEEeCCCC
Confidence            3467999999997532         13568999999999865            68999999998754322221      


Q ss_pred             --------CCc----------eEE---------------------------------------EEeeEEEEEeCCCCCCC
Q 013277          286 --------SGE----------GRI---------------------------------------RLKKNIKVKVPPGVSTG  308 (446)
Q Consensus       286 --------~G~----------G~v---------------------------------------~~~~~l~V~Ip~G~~~G  308 (446)
                              .|.          |.+                                       ..+..++|+||+|+++|
T Consensus       227 ~~G~~i~l~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldg~i~v~ip~g~~~g  306 (376)
T PRK14280        227 DNGQQIRVSGEGEPGVNGGPAGDLYVVFRVRPHEFFERDGDDIYCEMPLTFAQAALGDEIEVPTLHGKVKLKIPAGTQTG  306 (376)
T ss_pred             cCCcEEEEcccccCCCCCCCCcCEEEEEEEecCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCceEEEEECCCCCCC
Confidence                    121          221                                       12345899999999999


Q ss_pred             CEEEEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceE
Q 013277          309 SILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLF  349 (446)
Q Consensus       309 ~~i~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~  349 (446)
                      ++++|+|+|++...+...|||||+|+|..|..++.+...|+
T Consensus       307 ~~~~i~g~G~p~~~~~~~GDL~v~~~v~~P~~Ls~~q~~~l  347 (376)
T PRK14280        307 TQFRLKGKGVPNVRGYGQGDQYVVVRVVTPTKLTDRQKELL  347 (376)
T ss_pred             cEEEEcCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHH
Confidence            99999999999765556899999999999887666555443

>PRK14293 chaperone protein DnaJ; Provisional

Probab=99.36  E-value=9.4e-13  Score=134.60  Aligned_cols=118  Identities=26%  Similarity=0.536  Sum_probs=89.8

Q ss_pred             eeecccccCCccccC---------cceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeec-------
Q 013277          222 LETCEVCTGTGAKMG---------SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC-------  285 (446)
Q Consensus       222 ~~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C-------  285 (446)
                      ...|+.|+|+|....         ....+|+.|+|+|+++.            ..|..|+|.|.+.+..-..+       
T Consensus       160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~~~V~IppG~~  227 (374)
T PRK14293        160 PTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIE------------DPCDACGGQGVKQVTKKLKINIPAGVD  227 (374)
T ss_pred             CeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEec------------cCCCCCCCCcccccceEEEEEeCCCCC
Confidence            468999999997532         12568999999999865            68999999998654322111       


Q ss_pred             -------CCc----------eEE---------------------------------------EEeeEEEEEeCCCCCCCC
Q 013277          286 -------SGE----------GRI---------------------------------------RLKKNIKVKVPPGVSTGS  309 (446)
Q Consensus       286 -------~G~----------G~v---------------------------------------~~~~~l~V~Ip~G~~~G~  309 (446)
                             .|.          |..                                       ..+..++|+||+|+++|+
T Consensus       228 ~G~~i~l~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ldG~~~i~ip~~~~~g~  307 (374)
T PRK14293        228 TGTRLRVSGEGDAGLRGGPPGDLYVYLFVKNDPEFRRDGINILSEIKISYLQAILGDTLEVDTVDGPVELTIPAGTQPNT  307 (374)
T ss_pred             CCCEEEEccCccCCCCCCCCcCEEEEEEEeCCCccChhhhceEEEeccCHHHHhCCCEEEecCCCCCEEEEeCCCCCCCC
Confidence                   121          222                                       123347899999999999


Q ss_pred             EEEEccCCCCCCCC-CCCccEEEEEEEEeccCcccCCcceEEE
Q 013277          310 ILRVVGEGDAGPRG-GPPGDLYVYLDVEEIPGIQRDGIDLFST  351 (446)
Q Consensus       310 ~i~l~g~G~~~~~g-~~~GDL~v~i~v~~~~~f~R~g~dL~~~  351 (446)
                      +++|+|+|.+...+ +..|||||+|+|..|+.+++++.+|+.+
T Consensus       308 ~~ri~g~G~p~~~~~~~~GDL~v~~~v~~P~~l~~~~~~l~~~  350 (374)
T PRK14293        308 VLTLENKGVPRLGNPVARGDHLITVKVKIPTRISDEERELLEK  350 (374)
T ss_pred             EEEECCCCCCCCCCCCCcCCEEEEEEEECCCCCCHHHHHHHHH
Confidence            99999999997544 3579999999999999999999887654

>PRK05014 hscB co-chaperone HscB; Provisional

Probab=99.36  E-value=9.5e-13  Score=119.87  Aligned_cols=64  Identities=31%  Similarity=0.542  Sum_probs=56.8

Q ss_pred             cCchhhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCcc------hHHHHHHHHHHHhhcchhhhhhhhhh
Q 013277           77 GDYYATLGVPKS--ASGKEIKAAYRKLARQYHPDVNKEPG------ATEKFKEISAAYEVLSDDKKRAMYDQ  140 (446)
Q Consensus        77 ~d~Y~iLgv~~~--as~~eIk~ayr~l~~~~HPD~~~~~~------~~~~f~~i~~Ay~vL~d~~~r~~yd~  140 (446)
                      .|||++|||++.  ++.++|+++||++++++|||+.....      +.+.|..||+||++|+||.+|+.|+-
T Consensus         1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll   72 (171)
T PRK05014          1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLL   72 (171)
T ss_pred             CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHH
Confidence            389999999995  78899999999999999999976432      45689999999999999999999985

>PRK01356 hscB co-chaperone HscB; Provisional

Probab=99.36  E-value=8.9e-13  Score=119.33  Aligned_cols=65  Identities=31%  Similarity=0.465  Sum_probs=56.9

Q ss_pred             cCchhhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCcc----hHHHHHHHHHHHhhcchhhhhhhhhhc
Q 013277           77 GDYYATLGVPKS--ASGKEIKAAYRKLARQYHPDVNKEPG----ATEKFKEISAAYEVLSDDKKRAMYDQY  141 (446)
Q Consensus        77 ~d~Y~iLgv~~~--as~~eIk~ayr~l~~~~HPD~~~~~~----~~~~f~~i~~Ay~vL~d~~~r~~yd~~  141 (446)
                      .|||++|||++.  ++.++|+++||++++++|||++..+.    +.+.+..||+||++|+||.+|+.|+.-
T Consensus         2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~   72 (166)
T PRK01356          2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLL   72 (166)
T ss_pred             CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            489999999996  78999999999999999999986432    234578999999999999999999864

>PRK14277 chaperone protein DnaJ; Provisional

Probab=99.36  E-value=1.2e-12  Score=134.42  Aligned_cols=116  Identities=32%  Similarity=0.628  Sum_probs=87.0

Q ss_pred             eeecccccCCccccCc---------ceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeec-------
Q 013277          222 LETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC-------  285 (446)
Q Consensus       222 ~~~C~~C~G~G~~~~~---------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C-------  285 (446)
                      ...|..|+|+|.....         ...+|+.|+|+|.++.            ..|+.|+|.|.+.+..-.++       
T Consensus       172 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~Ip~G~~  239 (386)
T PRK14277        172 PVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIIT------------DPCNKCGGTGRIRRRRKIKVNIPAGID  239 (386)
T ss_pred             CccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeecc------------CCCCCCCCCcEEeeeeEEEEecCCCcc
Confidence            4689999999975321         2468999999999865            68999999998755422222       


Q ss_pred             -------CCc----------eEE---------------------------------------EEeeEEEEEeCCCCCCCC
Q 013277          286 -------SGE----------GRI---------------------------------------RLKKNIKVKVPPGVSTGS  309 (446)
Q Consensus       286 -------~G~----------G~v---------------------------------------~~~~~l~V~Ip~G~~~G~  309 (446)
                             .|.          |.+                                       ..+..++|.||+|+++|+
T Consensus       240 ~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~~v~ip~g~~~g~  319 (386)
T PRK14277        240 DGQMITLRGEGEPGIKGGPNGDLYIVIKVKPHPLFKREGYNVYLEMPITFTDAALGGEIEIPTLDGKVKFTIPEGTQTGT  319 (386)
T ss_pred             CCcEEEEccccccCCCCCCCccEEEEEEEecCCCeEEecCCEEEEEEcCHHHHhCCCEEEEEcCCCCEEEEECCCCCCCC
Confidence                   222          221                                       112347999999999999


Q ss_pred             EEEEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceE
Q 013277          310 ILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLF  349 (446)
Q Consensus       310 ~i~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~  349 (446)
                      +++|+|+|++..++...|||||+|+|..|..++.+..+++
T Consensus       320 ~~ri~g~G~p~~~~~~~GDL~v~~~V~~P~~Ls~~qk~~l  359 (386)
T PRK14277        320 KFRLRGKGIPHLRGRGRGDQIVKVYIEVPKKLTEKQKELL  359 (386)
T ss_pred             EEEECCCCCCCCCCCCCCCEEEEEEEEeCCCCCHHHHHHH
Confidence            9999999999765556899999999999887666655543

>PRK14297 chaperone protein DnaJ; Provisional

Probab=99.36  E-value=1.1e-12  Score=134.52  Aligned_cols=116  Identities=28%  Similarity=0.576  Sum_probs=86.9

Q ss_pred             eeecccccCCccccC---------cceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeec-------
Q 013277          222 LETCEVCTGTGAKMG---------SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC-------  285 (446)
Q Consensus       222 ~~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C-------  285 (446)
                      ...|+.|+|+|....         ....+|+.|+|+|.++.            ..|..|+|.|.+....-...       
T Consensus       165 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~i~V~Ip~G~~  232 (380)
T PRK14297        165 PKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIE------------DPCNKCHGKGKVRKNRKIKVNVPAGVD  232 (380)
T ss_pred             CccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcC------------CCCCCCCCCeEEEeEeEEEEEeCCCCC
Confidence            567999999997532         23678999999998865            68999999997654322222       


Q ss_pred             -------CCc----------eEE---------------------------------------EEeeEEEEEeCCCCCCCC
Q 013277          286 -------SGE----------GRI---------------------------------------RLKKNIKVKVPPGVSTGS  309 (446)
Q Consensus       286 -------~G~----------G~v---------------------------------------~~~~~l~V~Ip~G~~~G~  309 (446)
                             .|.          |.+                                       ..+..++|+||+|+++|+
T Consensus       233 ~G~~I~l~g~G~~~~~~~~~GDL~v~v~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldg~~~v~ip~g~~~g~  312 (380)
T PRK14297        233 TGNVIPLRGQGEHGKNGGPTGDLYINIRVAPHKTFKRKGFDIYIDKHISFAKAALGTEIKVPTVDGEVKYEVPAGTQPGT  312 (380)
T ss_pred             CCcEEEEecCccCCCCCCCCccEEEEEEEcCCCCEEEeCCCEEEEEEeCHHHHhCCCcEEEEcCCCcEEEEECCCcCCCC
Confidence                   111          111                                       123458999999999999


Q ss_pred             EEEEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceE
Q 013277          310 ILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLF  349 (446)
Q Consensus       310 ~i~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~  349 (446)
                      +++|+|+|++..+++..|||||+|+|..|..+..+...++
T Consensus       313 ~~ri~g~G~p~~~~~~~GDL~v~~~v~~P~~ls~~q~~~l  352 (380)
T PRK14297        313 VFRLKGKGVPRVNSTGRGNQYVTVIVDIPKKLNSKQKEAL  352 (380)
T ss_pred             EEEEcCCCcCCCCCCCCCcEEEEEEEEcCCCCCHHHHHHH
Confidence            9999999999766567899999999999987666555443

>PRK14295 chaperone protein DnaJ; Provisional

Probab=99.35  E-value=1.4e-12  Score=133.93  Aligned_cols=116  Identities=30%  Similarity=0.584  Sum_probs=87.3

Q ss_pred             ceeecccccCCccccC-----cceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeec----------
Q 013277          221 HLETCEVCTGTGAKMG-----SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC----------  285 (446)
Q Consensus       221 ~~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C----------  285 (446)
                      ....|+.|+|+|....     ....+|+.|+|+|+++.            .+|..|.|.|.+....-.++          
T Consensus       182 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~  249 (389)
T PRK14295        182 TPRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIAD------------DPCLVCKGSGRAKSSRTMQVRIPAGVSDGQ  249 (389)
T ss_pred             CCcCCCCCCCEeEEEEEecceEEEEecCCCcceeEEec------------cCCCCCCCCceEeeeeEEEEEeCCCCCCCC
Confidence            3468999999997532     23568999999999875            68999999998755322221          


Q ss_pred             ----CCc----------eEE----------------------------------------EEeeEEEEEeCCCCCCCCEE
Q 013277          286 ----SGE----------GRI----------------------------------------RLKKNIKVKVPPGVSTGSIL  311 (446)
Q Consensus       286 ----~G~----------G~v----------------------------------------~~~~~l~V~Ip~G~~~G~~i  311 (446)
                          .|.          |.+                                        .+.+.++|+||+|+++|+++
T Consensus       250 ~i~l~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~tldG~~~~v~ip~g~~~g~~i  329 (389)
T PRK14295        250 RIRLRGKGAPGERGGPAGDLYVVVHVDPHPVFGRSGDNLTVTVPVTFPEAALGAEVRVPTLGGPPVTVKLPPGTPNGRVL  329 (389)
T ss_pred             EEEEcccccCCCCCCCCccEEEEEEEecCCCEEEecCCEEEEEeecHHHHhCCCeEEEECCCCCEEEEEECCccCCCcEE
Confidence                121          222                                        12357999999999999999


Q ss_pred             EEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceE
Q 013277          312 RVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLF  349 (446)
Q Consensus       312 ~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~  349 (446)
                      +|+|+|++.. ++.+|||||+|+|..|..+..++..|+
T Consensus       330 ri~G~G~p~~-~~~~GDL~i~~~v~~P~~Ls~~qk~~l  366 (389)
T PRK14295        330 RVRGKGAVRK-DGTRGDLLVTVEVAVPKDLSGKAREAL  366 (389)
T ss_pred             EECCCCcCCC-CCCCCCEEEEEEEECCCCCCHHHHHHH
Confidence            9999999964 456899999999999987666655544

>PRK14296 chaperone protein DnaJ; Provisional

Probab=99.35  E-value=1.5e-12  Score=132.88  Aligned_cols=116  Identities=22%  Similarity=0.537  Sum_probs=85.7

Q ss_pred             eeecccccCCccccCc---------ceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeec-------
Q 013277          222 LETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC-------  285 (446)
Q Consensus       222 ~~~C~~C~G~G~~~~~---------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C-------  285 (446)
                      ...|+.|+|+|.....         ...+|+.|+|+|+++.            ..|+.|+|.|.+.+..-.++       
T Consensus       166 ~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~~~V~Ip~G~~  233 (372)
T PRK14296        166 IHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIK------------NKCKNCKGKGKYLERKKIEVNIPKGIR  233 (372)
T ss_pred             CccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceeec------------ccccCCCCceEEEEEEEEEEEECCCCC
Confidence            4679999999976432         2468999999999875            68999999997654322221       


Q ss_pred             -------CCce----------EE----------------------------------------EEeeEEEEEeCCCCCCC
Q 013277          286 -------SGEG----------RI----------------------------------------RLKKNIKVKVPPGVSTG  308 (446)
Q Consensus       286 -------~G~G----------~v----------------------------------------~~~~~l~V~Ip~G~~~G  308 (446)
                             .|.|          .+                                        ..+..++|+||+|+++|
T Consensus       234 ~G~~i~~~g~G~~~~~~~~~GDL~v~v~v~~h~~F~R~~G~DL~~~~~Isl~eAllG~~~~i~tldG~~~v~ip~~t~~g  313 (372)
T PRK14296        234 PNQQIKLSQKGHASLNNGVNGDLIIDIYLKESKVFEIINNNDILMTYNISYLDAILGNEIIIKTLDGDIKYKLPKSINSN  313 (372)
T ss_pred             CCCEEEEeccccCCCCCCCCccEEEEEEEeCCCCEEEeCCCcEEEEEecCHHHHhCCCEEEeeCCCCCEEEEECCccCCC
Confidence                   1211          11                                        12334899999999999


Q ss_pred             CEEEEccCCCCCC-CCCCCccEEEEEEEEeccCcccCCcceE
Q 013277          309 SILRVVGEGDAGP-RGGPPGDLYVYLDVEEIPGIQRDGIDLF  349 (446)
Q Consensus       309 ~~i~l~g~G~~~~-~g~~~GDL~v~i~v~~~~~f~R~g~dL~  349 (446)
                      ++++|+|+|++.. +++..|||||+|+|+.|..+..+...|+
T Consensus       314 ~~~ri~GkGmP~~~~~~~~GDL~V~~~V~~P~~Ls~~q~~~l  355 (372)
T PRK14296        314 ELIIINNKGLYKSINKDKRGDLIIKVNIVVPKNLSKKEKELI  355 (372)
T ss_pred             cEEEEcCCCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHHHH
Confidence            9999999999843 2345799999999999887766655543

>PRK14289 chaperone protein DnaJ; Provisional

Probab=99.34  E-value=1.4e-12  Score=133.83  Aligned_cols=116  Identities=30%  Similarity=0.600  Sum_probs=87.6

Q ss_pred             ceeecccccCCccccCc---------ceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeec------
Q 013277          221 HLETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC------  285 (446)
Q Consensus       221 ~~~~C~~C~G~G~~~~~---------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C------  285 (446)
                      ....|+.|+|+|.....         ...+|+.|+|+|.++.            ..|+.|+|.|.+....-.++      
T Consensus       170 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~~~V~Ip~G~  237 (386)
T PRK14289        170 GSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIK------------KKCKKCGGEGIVYGEEVITVKIPAGV  237 (386)
T ss_pred             CCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccccC------------cCCCCCCCCcEEeeeEEEEEEeCCCC
Confidence            45789999999986432         2568999999998865            68999999998765422221      


Q ss_pred             --------CCc----------eEE---------------------------------------EEeeEEEEEeCCCCCCC
Q 013277          286 --------SGE----------GRI---------------------------------------RLKKNIKVKVPPGVSTG  308 (446)
Q Consensus       286 --------~G~----------G~v---------------------------------------~~~~~l~V~Ip~G~~~G  308 (446)
                              .|.          |..                                       .....++|.||+|+++|
T Consensus       238 ~~G~~i~l~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ldg~i~v~ip~g~~~g  317 (386)
T PRK14289        238 AEGMQLSMNGKGNAGKHGGVNGDLLVVIEEEPHPELIRDENDLIYNLLLSVPTAALGGAVEVPTIDGKAKVKIEAGTQPG  317 (386)
T ss_pred             CCCCEEEEeccccCCCCCCCCccEEEEEEEecCCcccccccceeEEeccCHHHHhCCCeEEeecCCceEEEEECCccCCC
Confidence                    222          211                                       22345899999999999


Q ss_pred             CEEEEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcce
Q 013277          309 SILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDL  348 (446)
Q Consensus       309 ~~i~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL  348 (446)
                      ++++|+|+|.+.++++..|||||+|+|+.|..+..++..|
T Consensus       318 ~~~ri~g~G~p~~~~~~~GDL~v~~~v~~P~~l~~~q~~~  357 (386)
T PRK14289        318 KVLRLRNKGLPSVNGYGTGDLLVNVSVYIPETLSKEEKQT  357 (386)
T ss_pred             cEEEECCCCcCCCCCCCCCcEEEEEEEEeCCCCCHHHHHH
Confidence            9999999999976666789999999999887666555444

>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.34  E-value=7.6e-13  Score=132.86  Aligned_cols=67  Identities=42%  Similarity=0.606  Sum_probs=64.7

Q ss_pred             CcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhhhhcc
Q 013277           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYG  142 (446)
Q Consensus        76 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g  142 (446)
                      .+|+|.+|||+.++++++||+.||++|...|||||..+.|++.|+.++.||++|+|+++|..||.--
T Consensus       234 ~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~~kR~eYd~e~  300 (490)
T KOG0720|consen  234 ILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDSVKRKEYDLEL  300 (490)
T ss_pred             CCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcchhhhhHHHHHH
Confidence            6799999999999999999999999999999999999999999999999999999999999999854

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=99.32  E-value=2.4e-12  Score=132.90  Aligned_cols=118  Identities=24%  Similarity=0.535  Sum_probs=87.4

Q ss_pred             ceeecccccCCccccC---------cceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeec------
Q 013277          221 HLETCEVCTGTGAKMG---------SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC------  285 (446)
Q Consensus       221 ~~~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C------  285 (446)
                      ....|+.|+|+|....         ....+|+.|+|+|+++...          .+|+.|+|.|.+....-.++      
T Consensus       165 ~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~~----------~~C~~C~G~g~v~~~~~l~V~Ip~G~  234 (421)
T PTZ00037        165 AFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPES----------KKCKNCSGKGVKKTRKILEVNIDKGV  234 (421)
T ss_pred             CCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceecccc----------ccCCcCCCcceeeeeeEEEEeeCCCC
Confidence            4568999999996422         1356899999999987532          68999999998765422222      


Q ss_pred             --------CCceE---------E----------------------------------------EEeeEEEEEeCCC--CC
Q 013277          286 --------SGEGR---------I----------------------------------------RLKKNIKVKVPPG--VS  306 (446)
Q Consensus       286 --------~G~G~---------v----------------------------------------~~~~~l~V~Ip~G--~~  306 (446)
                              .|.|.         +                                        .+.+.++|+||+|  ++
T Consensus       235 ~dG~~I~~~G~Gd~~~~~~pGDLiv~I~~~ph~~F~R~G~DL~~~~~Isl~eAllG~~i~I~tLdG~~l~I~ip~g~vt~  314 (421)
T PTZ00037        235 PNQHKITFHGEADEKPNEIPGNVVFILNEKPHDTFKREGGDLFITKKISLYEALTGFVFYITHLDGRKLLVNTPPGEVVK  314 (421)
T ss_pred             CCCcEEEEecccCCCCCCCCCcEEEEEEecCCCCcEEeCCeEEEEEeCCHHHHhcCCEEEeeCCCCCeEEEEeCCCcccC
Confidence                    23222         1                                        2345799999999  99


Q ss_pred             CCCEEEEccCCCCCCCC-CCCccEEEEEEEEec--cCcccCCcce
Q 013277          307 TGSILRVVGEGDAGPRG-GPPGDLYVYLDVEEI--PGIQRDGIDL  348 (446)
Q Consensus       307 ~G~~i~l~g~G~~~~~g-~~~GDL~v~i~v~~~--~~f~R~g~dL  348 (446)
                      +|++++|+|+|++..++ +..|||||+|+|..|  ..++.+...|
T Consensus       315 pg~~~~I~geGmP~~~~~~~rGDL~V~~~V~~P~~~~Ls~~qk~l  359 (421)
T PTZ00037        315 PGDIKVINNEGMPTYKSPFKKGNLYVTFEVIFPVDRKFTNEEKEI  359 (421)
T ss_pred             CCcEEEeCCCCcccCCCCCCCCCEEEEEEEEcCCCCCCCHHHHHH
Confidence            99999999999996543 457999999999988  6666555443

>PRK14292 chaperone protein DnaJ; Provisional

Probab=99.32  E-value=3.3e-12  Score=130.61  Aligned_cols=118  Identities=26%  Similarity=0.564  Sum_probs=89.3

Q ss_pred             ceeecccccCCccccCc---------ceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceee---------
Q 013277          221 HLETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYC---------  282 (446)
Q Consensus       221 ~~~~C~~C~G~G~~~~~---------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C---------  282 (446)
                      ....|..|+|+|.....         ...+|+.|+|.|..+.            ..|+.|+|.|.+....-         
T Consensus       156 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~~~V~Ip~G~  223 (371)
T PRK14292        156 PPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQIIT------------DPCTVCRGRGRTLKAETVKVKLPRGI  223 (371)
T ss_pred             CCccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceecC------------CCCCCCCCceEEeecceEEEEECCCC
Confidence            35789999999976422         2468999999998764            78999999998754311         


Q ss_pred             -----eecCCce--------EE---------------------------------------EEeeEEEEEeCCCCCCCCE
Q 013277          283 -----RKCSGEG--------RI---------------------------------------RLKKNIKVKVPPGVSTGSI  310 (446)
Q Consensus       283 -----~~C~G~G--------~v---------------------------------------~~~~~l~V~Ip~G~~~G~~  310 (446)
                           ....|.|        .+                                       ..+..++|.||+|+++|++
T Consensus       224 ~~G~~i~~~G~G~~~~~~~GDL~v~i~v~~h~~f~r~g~dL~~~~~isl~eAl~G~~~~i~tldG~~~v~ip~g~~~g~~  303 (371)
T PRK14292        224 DEGYRIRVAGMGNEGPGGNGDLYVHIEMEPHPELRREQEHLIYEARIGFAKAALGGQITVPTLDGPQVIEVKPGTQHGDL  303 (371)
T ss_pred             CCCcEEEEecCcCCCCCCCCCEEEEEEEecCCccccchhceeEEeccCHHHHhCCCeEEEECCCCCEEEecCCCcCCCcE
Confidence                 1223333        22                                       1123357999999999999


Q ss_pred             EEEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEE
Q 013277          311 LRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFS  350 (446)
Q Consensus       311 i~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~  350 (446)
                      ++|+|+|++..++..+|||||+|+|+.|+.++.+...|+.
T Consensus       304 ~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~  343 (371)
T PRK14292        304 HRLRGQGMPRLQGAGTGDLIVEYEIAVPKQLSPEAREALE  343 (371)
T ss_pred             EEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHH
Confidence            9999999997766678999999999999988877766543

>PRK14283 chaperone protein DnaJ; Provisional

Probab=99.32  E-value=2.3e-12  Score=131.96  Aligned_cols=116  Identities=28%  Similarity=0.611  Sum_probs=87.1

Q ss_pred             eeecccccCCccccCc---------ceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeec-------
Q 013277          222 LETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC-------  285 (446)
Q Consensus       222 ~~~C~~C~G~G~~~~~---------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C-------  285 (446)
                      ...|+.|+|+|.....         ...+|+.|+|+|+.+.            ..|..|+|.|.+.......+       
T Consensus       163 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~IppG~~  230 (378)
T PRK14283        163 VKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVE------------KPCSNCHGKGVVRETKTISVKIPAGVE  230 (378)
T ss_pred             CccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceecC------------CCCCCCCCceeeccceeEEEEECCCCC
Confidence            4679999999986422         2568999999998864            68999999998755422222       


Q ss_pred             -------CCc----------eEE---------------------------------------EEeeEEEEEeCCCCCCCC
Q 013277          286 -------SGE----------GRI---------------------------------------RLKKNIKVKVPPGVSTGS  309 (446)
Q Consensus       286 -------~G~----------G~v---------------------------------------~~~~~l~V~Ip~G~~~G~  309 (446)
                             .|.          |..                                       ..+..++|.||+|+++|+
T Consensus       231 ~G~~i~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~r~G~DL~~~~~Isl~eAl~G~~~~i~tldG~i~v~ip~g~~~g~  310 (378)
T PRK14283        231 TGSRLRVSGEGEMGDRGGEPGDLYVVIKVKPHKIFRREGANLYYEKPISFVQAALGDTVDVPTIDGPVELKIPAGTQSGT  310 (378)
T ss_pred             CCcEEEEeccccCCCCCCCCccEEEEEEEEcCCCEEEecCCEEEEEecCHHHHhcCCeEEEEcCCceEEEEeCCCCCCCC
Confidence                   111          111                                       123368999999999999


Q ss_pred             EEEEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceE
Q 013277          310 ILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLF  349 (446)
Q Consensus       310 ~i~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~  349 (446)
                      +++|+|+|++...+...|||||+|+|..|+.++.++..|+
T Consensus       311 ~~ri~g~G~p~~~~~~~GdL~v~~~v~~P~~l~~~q~~ll  350 (378)
T PRK14283        311 TFRLKGHGMPSLRWSGKGNLYVKVKVVVPKKLSPKQKELL  350 (378)
T ss_pred             EEEECCCCCCCCCCCCCCCEEEEEEEEeCCCCCHHHHHHH
Confidence            9999999999765556899999999998877666655444

>PTZ00100 DnaJ chaperone protein; Provisional

Probab=99.32  E-value=1.8e-12  Score=109.10  Aligned_cols=53  Identities=26%  Similarity=0.421  Sum_probs=48.6

Q ss_pred             cCcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcc
Q 013277           75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLS  130 (446)
Q Consensus        75 ~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~  130 (446)
                      ...++|+||||+++|+.+|||++||+|++++|||+.   ++.+.|++|++||++|.
T Consensus        63 s~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkg---Gs~~~~~kIneAyevL~  115 (116)
T PTZ00100         63 SKSEAYKILNISPTASKERIREAHKQLMLRNHPDNG---GSTYIASKVNEAKDLLL  115 (116)
T ss_pred             CHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCC---CCHHHHHHHHHHHHHHh
Confidence            346999999999999999999999999999999985   56788999999999985

>PRK00294 hscB co-chaperone HscB; Provisional

Probab=99.31  E-value=3.6e-12  Score=115.97  Aligned_cols=66  Identities=27%  Similarity=0.401  Sum_probs=58.5

Q ss_pred             cCcCchhhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCcc------hHHHHHHHHHHHhhcchhhhhhhhhh
Q 013277           75 ASGDYYATLGVPKS--ASGKEIKAAYRKLARQYHPDVNKEPG------ATEKFKEISAAYEVLSDDKKRAMYDQ  140 (446)
Q Consensus        75 ~~~d~Y~iLgv~~~--as~~eIk~ayr~l~~~~HPD~~~~~~------~~~~f~~i~~Ay~vL~d~~~r~~yd~  140 (446)
                      ...|||++|||++.  .+.++|+++||++++++|||++....      +.+.+..||+||++|+||.+|+.|+.
T Consensus         2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL   75 (173)
T PRK00294          2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLL   75 (173)
T ss_pred             CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHH
Confidence            35799999999996  67899999999999999999986432      45679999999999999999999996

>PRK14291 chaperone protein DnaJ; Provisional

Probab=99.29  E-value=9.5e-12  Score=127.54  Aligned_cols=106  Identities=35%  Similarity=0.666  Sum_probs=80.8

Q ss_pred             ceeecccccCCccccC-----cceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeec----------
Q 013277          221 HLETCEVCTGTGAKMG-----SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC----------  285 (446)
Q Consensus       221 ~~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C----------  285 (446)
                      ....|+.|+|+|....     ....+|+.|+|+|. +.            ..|+.|+|.|.+....-.+.          
T Consensus       172 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~-~~------------~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~  238 (382)
T PRK14291        172 GEKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGV-LR------------EPCSKCNGRGLVIKKETIKVRIPPGVDNGS  238 (382)
T ss_pred             CCccCCCCCCceEEEEecceEEEEecCCCCCCceE-Ec------------cCCCCCCCCceEEeeeEEEEEeCCCCCCCC
Confidence            3567999999997532     23678999999994 33            68999999998765422222          


Q ss_pred             ----CCceE----------E----------------------------------------EEeeEEEEEeCCCCCCCCEE
Q 013277          286 ----SGEGR----------I----------------------------------------RLKKNIKVKVPPGVSTGSIL  311 (446)
Q Consensus       286 ----~G~G~----------v----------------------------------------~~~~~l~V~Ip~G~~~G~~i  311 (446)
                          .|.|.          +                                        .+.+.++|+||+|+++|+++
T Consensus       239 ~i~~~g~G~~~~~g~~~GDL~v~i~~~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~l~V~Ip~g~~~G~~i  318 (382)
T PRK14291        239 KLRVPGKGHAGRFGGPPGDLYIIVKVKPHPLFERRGDNLYLDVNITVAEAVLGTELEVPLLDGKKEKVKIPPGTKEGDKI  318 (382)
T ss_pred             EEEEecCcCCCCCCCCCccEEEEEEEccCCCeeeecCCeEEEEEeeHHHHhCCCEEEEecCCCCEEEEEECCccCCCCEE
Confidence                22221          1                                        12356899999999999999


Q ss_pred             EEccCCCCCCCCCCCccEEEEEEEEecc
Q 013277          312 RVVGEGDAGPRGGPPGDLYVYLDVEEIP  339 (446)
Q Consensus       312 ~l~g~G~~~~~g~~~GDL~v~i~v~~~~  339 (446)
                      +|+|+|++...+..+|||||+|+|..|.
T Consensus       319 ~i~G~G~p~~~~~~~GDL~V~~~V~~P~  346 (382)
T PRK14291        319 RVPGKGMPRLKGSGYGDLVVRVHIDVPK  346 (382)
T ss_pred             EECCCCCCCCCCCCCCCEEEEEEEEeCC
Confidence            9999999976655689999999999886

>PRK03578 hscB co-chaperone HscB; Provisional

Probab=99.29  E-value=5.7e-12  Score=115.11  Aligned_cols=65  Identities=31%  Similarity=0.444  Sum_probs=56.5

Q ss_pred             CcCchhhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCc-c-----hHHHHHHHHHHHhhcchhhhhhhhhh
Q 013277           76 SGDYYATLGVPKS--ASGKEIKAAYRKLARQYHPDVNKEP-G-----ATEKFKEISAAYEVLSDDKKRAMYDQ  140 (446)
Q Consensus        76 ~~d~Y~iLgv~~~--as~~eIk~ayr~l~~~~HPD~~~~~-~-----~~~~f~~i~~Ay~vL~d~~~r~~yd~  140 (446)
                      ..|||++|||++.  ++..+|+++||+|++++|||++... .     +.+.+..||+||++|+||.+|+.|+.
T Consensus         5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll   77 (176)
T PRK03578          5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLL   77 (176)
T ss_pred             CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHH
Confidence            4699999999985  6899999999999999999998642 2     23446899999999999999999995

>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional

Probab=99.17  E-value=2.2e-11  Score=118.67  Aligned_cols=56  Identities=46%  Similarity=0.614  Sum_probs=50.7

Q ss_pred             CcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--------cchHHHHHHHHHHHhhcch
Q 013277           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE--------PGATEKFKEISAAYEVLSD  131 (446)
Q Consensus        76 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~--------~~~~~~f~~i~~Ay~vL~d  131 (446)
                      -.|+|++|||++++|.+|||+|||+|+++||||++..        +.++++|++|++||++|+.
T Consensus       199 ~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~  262 (267)
T PRK09430        199 LEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK  262 (267)
T ss_pred             HHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence            4689999999999999999999999999999999642        2477899999999999986

>PHA02624 large T antigen; Provisional

Probab=99.14  E-value=3.4e-11  Score=126.84  Aligned_cols=60  Identities=32%  Similarity=0.538  Sum_probs=56.4

Q ss_pred             CcCchhhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhh
Q 013277           76 SGDYYATLGVPKSA--SGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMY  138 (446)
Q Consensus        76 ~~d~Y~iLgv~~~a--s~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~y  138 (446)
                      ..++|++|||+++|  +.+|||+|||++|++||||++   ++.++|++|++||++|+|+.+|..|
T Consensus        10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKg---Gdeekfk~Ln~AYevL~d~~k~~r~   71 (647)
T PHA02624         10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKG---GDEEKMKRLNSLYKKLQEGVKSARQ   71 (647)
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCC---CcHHHHHHHHHHHHHHhcHHHhhhc
Confidence            45899999999999  999999999999999999996   4578999999999999999999998

>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

Probab=99.08  E-value=9.3e-11  Score=117.30  Aligned_cols=71  Identities=37%  Similarity=0.629  Sum_probs=64.7

Q ss_pred             cCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC------cchHHHHHHHHHHHhhcchhhhhhhhhhcccccee
Q 013277           77 GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE------PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVK  147 (446)
Q Consensus        77 ~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~------~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~  147 (446)
                      .|+||||||+.+++..+||++||+|..+||||+.+.      .+-++.+.+|++||+.|+|...|+.|-.||.....
T Consensus        98 fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtPd~p  174 (610)
T COG5407          98 FDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTPDSP  174 (610)
T ss_pred             CChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCCCC
Confidence            499999999999999999999999999999999764      34678999999999999999999999999976544

>PRK14299 chaperone protein DnaJ; Provisional

Probab=98.96  E-value=6.8e-10  Score=109.88  Aligned_cols=91  Identities=25%  Similarity=0.378  Sum_probs=76.6

Q ss_pred             cccCCcceEEEEeecHHHHhCCCEEEEeccCCe-EEEEeCCCCCCCcEEEEccCCCCCCCCCCCCCCEEEEEEEEcCCCC
Q 013277          341 IQRDGIDLFSTISISYLDAIMGTVVKVKTVEGI-SELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRI  419 (446)
Q Consensus       341 f~R~g~dL~~~~~Isl~eAl~G~~~~i~~ldG~-~~l~i~~~~~~g~~~~l~g~G~P~~~~~~~~GdL~v~~~v~~P~~l  419 (446)
                      +.|+|.||++++.|||.||++|++++| +++|. ++|+||+|+++|++++++|+|++.       |||||+|+|+-++.+
T Consensus       125 ~~~~g~dl~~~l~isL~ea~~G~~~~i-~l~g~~~~V~Ip~G~~~G~~ir~~g~G~~~-------GDL~v~i~v~~h~~f  196 (291)
T PRK14299        125 RARKGRDLEAELPLTLEEAYRGGEKVV-EVAGERLSVRIPPGVREGQVIRLAGKGRQG-------GDLYLVVRLLPHPVF  196 (291)
T ss_pred             CCCCCCCEEEEEEecHHHHhCCCeEEE-eeCCEEEEEecCCCcCCCcEEEECCCCCCC-------CCEEEEEEEcCCCCe
Confidence            457899999999999999999999998 67884 689999999999999999999962       999999999988877


Q ss_pred             CcchHHHHHHHhhccchhee
Q 013277          420 RYVYSPSLTIIQLNSVIILL  439 (446)
Q Consensus       420 s~~~~~~l~~l~~~~~~~~~  439 (446)
                      ..+...++..+.+..+++++
T Consensus       197 ~R~G~DL~~~~~Isl~eAl~  216 (291)
T PRK14299        197 RLEGDDLYATVDVPAPIAVV  216 (291)
T ss_pred             EEECCEEEEEEecCHHHHhC
Confidence            76666666555555555544

>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress

Probab=98.92  E-value=1.1e-09  Score=87.60  Aligned_cols=50  Identities=42%  Similarity=0.761  Sum_probs=39.5

Q ss_pred             eEEEEEeCCCCCCCCEEEEccCCCCCCCCC-CCccEEEEEEEEeccCcccC
Q 013277          295 KNIKVKVPPGVSTGSILRVVGEGDAGPRGG-PPGDLYVYLDVEEIPGIQRD  344 (446)
Q Consensus       295 ~~l~V~Ip~G~~~G~~i~l~g~G~~~~~g~-~~GDL~v~i~v~~~~~f~R~  344 (446)
                      +.++|+||+|+++|++++++|+|.+...+. ..|||||+++|..+..++.+
T Consensus        27 ~~~~i~ip~~~~~g~~~~i~g~G~p~~~~~~~~GdL~v~~~V~~P~~ls~~   77 (81)
T PF01556_consen   27 KTIKIKIPPGTQPGQQLRIKGKGMPKPKGGGKRGDLIVKFEVEFPKKLSPE   77 (81)
T ss_dssp             -EEEEEETST-STT-EEEETTESEEESSSTTSBEEEEEEEEEE--SSTSHH
T ss_pred             CEEEEeccCccCCCcEEeecCCCCCcCCCCCCcCCEEEEEEEECCCCCCHH
Confidence            478899999999999999999999866555 79999999999988877644

The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....

>PRK01773 hscB co-chaperone HscB; Provisional

Probab=98.88  E-value=3.5e-09  Score=96.43  Aligned_cols=64  Identities=23%  Similarity=0.314  Sum_probs=56.0

Q ss_pred             cCchhhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCcc------hHHHHHHHHHHHhhcchhhhhhhhhh
Q 013277           77 GDYYATLGVPKS--ASGKEIKAAYRKLARQYHPDVNKEPG------ATEKFKEISAAYEVLSDDKKRAMYDQ  140 (446)
Q Consensus        77 ~d~Y~iLgv~~~--as~~eIk~ayr~l~~~~HPD~~~~~~------~~~~f~~i~~Ay~vL~d~~~r~~yd~  140 (446)
                      .|||++||+++.  .+..+++++|++|.+++|||+....+      +.+.-..||+||.+|+||.+|+.|=-
T Consensus         2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL   73 (173)
T PRK01773          2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAII   73 (173)
T ss_pred             CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHH
Confidence            489999999985  89999999999999999999986533      34467899999999999999998854

>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB

Probab=98.84  E-value=4.5e-09  Score=94.49  Aligned_cols=53  Identities=30%  Similarity=0.447  Sum_probs=46.6

Q ss_pred             CCHHHHHHHHHHHHHHhCCCCCCCcc------hHHHHHHHHHHHhhcchhhhhhhhhhc
Q 013277           89 ASGKEIKAAYRKLARQYHPDVNKEPG------ATEKFKEISAAYEVLSDDKKRAMYDQY  141 (446)
Q Consensus        89 as~~eIk~ayr~l~~~~HPD~~~~~~------~~~~f~~i~~Ay~vL~d~~~r~~yd~~  141 (446)
                      .+.++|+++||++++++|||+.....      +.+.+..||+||++|+||.+|+.|+.-
T Consensus         3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~   61 (157)
T TIGR00714         3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLS   61 (157)
T ss_pred             CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHH
Confidence            47889999999999999999865422      567899999999999999999999974

This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.

>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

Probab=98.74  E-value=6e-09  Score=98.28  Aligned_cols=71  Identities=39%  Similarity=0.477  Sum_probs=62.8

Q ss_pred             ecccCcCchhhcCCCC---CCCHHHHHHHHHHHHHHhCCCCCC---CcchHHHHHHHHHHHhhcchhhhhhhhhhcc
Q 013277           72 VVCASGDYYATLGVPK---SASGKEIKAAYRKLARQYHPDVNK---EPGATEKFKEISAAYEVLSDDKKRAMYDQYG  142 (446)
Q Consensus        72 ~~~~~~d~Y~iLgv~~---~as~~eIk~ayr~l~~~~HPD~~~---~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g  142 (446)
                      ..|...|+|.+|||+.   .|++.+|.+|.++.+.+||||+..   +.+..+.|+.|+.||+||+|+.+|..||.--
T Consensus        38 k~Wk~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~d  114 (379)
T COG5269          38 KNWKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSND  114 (379)
T ss_pred             hhhhhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhccccc
Confidence            4566789999999986   788999999999999999999973   3567899999999999999999999999843

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.71  E-value=2e-08  Score=99.36  Aligned_cols=105  Identities=28%  Similarity=0.558  Sum_probs=79.8

Q ss_pred             ecccccCCccccCcc----------eeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeec-------C
Q 013277          224 TCEVCTGTGAKMGSK----------MRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC-------S  286 (446)
Q Consensus       224 ~C~~C~G~G~~~~~~----------~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C-------~  286 (446)
                      .|..|.|+|.+....          ...|..|+|+|..+...          ..|+.|.|++++...+-.+.       +
T Consensus       145 ~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~~~~k----------d~C~~C~G~~~v~~kkil~v~V~~g~~~  214 (337)
T KOG0712|consen  145 KCTTCRGSGVQTRTRQMGPGMVQSPQLVCDSCNGSGETISLK----------DRCKTCSGAKVVREKKILEVHVEPGMPH  214 (337)
T ss_pred             CCCCCCCCCceeEEEeccccccccceeEeccCCCcccccccc----------ccCcccccchhhhhhheeeccccCCCcc
Confidence            799999999864432          66899999999875533          78999999987654321111       0


Q ss_pred             CceEE--------------------------------------------------------EEeeEEEEEeCCC--CCCC
Q 013277          287 GEGRI--------------------------------------------------------RLKKNIKVKVPPG--VSTG  308 (446)
Q Consensus       287 G~G~v--------------------------------------------------------~~~~~l~V~Ip~G--~~~G  308 (446)
                      +...+                                                        .+.+.+++.++||  +.+|
T Consensus       215 ~~ki~f~geadea~g~~pgD~vl~i~~k~h~~F~Rrg~dL~~~~~i~l~eal~G~~~~~~~ldGr~l~~~~~pg~vi~~~  294 (337)
T KOG0712|consen  215 GQKITFKGEADEAPGTKPGDVVLLIDQKEHPGFDRRGSDLYRKLTISLVEALCGFQRVWETLDGRLLKLSSKPGEVISPG  294 (337)
T ss_pred             cceeeeeeeeeecCCCcCccEEEEecccccccceecccccceeeecchhhccccceEEEEccCCceEEEecCCCceeChh
Confidence            11110                                                        3457899999999  9999


Q ss_pred             CEEEEccCCCCCCCCCCCccEEEEEEEEecc
Q 013277          309 SILRVVGEGDAGPRGGPPGDLYVYLDVEEIP  339 (446)
Q Consensus       309 ~~i~l~g~G~~~~~g~~~GDL~v~i~v~~~~  339 (446)
                      +++++.|+|++..+.. .|||||.++|+.++
T Consensus       295 ~~~~v~~~gmp~~~~~-~g~lyi~~~v~fp~  324 (337)
T KOG0712|consen  295 DTKRVEGEGMPIFRNP-KGDLYIKFEVKFPK  324 (337)
T ss_pred             HEEeecCCCcccccCC-CCcEEEEEEEEcCC
Confidence            9999999999987655 99999999999887

>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.71  E-value=1.4e-08  Score=91.99  Aligned_cols=63  Identities=30%  Similarity=0.481  Sum_probs=57.4

Q ss_pred             cCcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--cchHHHHHHHHHHHhhcchhhhhhh
Q 013277           75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE--PGATEKFKEISAAYEVLSDDKKRAM  137 (446)
Q Consensus        75 ~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~--~~~~~~f~~i~~Ay~vL~d~~~r~~  137 (446)
                      .+.|+|++|.|.++.+.++||+.||+|+...|||+|++  +.|...|.-+..||..|-|+..|..
T Consensus        51 fnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr  115 (250)
T KOG1150|consen   51 FNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKR  115 (250)
T ss_pred             cccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence            36799999999999999999999999999999999996  5688999999999999999886543

>PRK10266 curved DNA-binding protein CbpA; Provisional

Probab=98.65  E-value=3.2e-08  Score=98.67  Aligned_cols=82  Identities=17%  Similarity=0.321  Sum_probs=64.3

Q ss_pred             cCCcceEEEEeecHHHHhCCCEEEE----eccC--C--------eEEEEeCCCCCCCcEEEEccCCCCCCCCCCCCCCEE
Q 013277          343 RDGIDLFSTISISYLDAIMGTVVKV----KTVE--G--------ISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHL  408 (446)
Q Consensus       343 R~g~dL~~~~~Isl~eAl~G~~~~i----~~ld--G--------~~~l~i~~~~~~g~~~~l~g~G~P~~~~~~~~GdL~  408 (446)
                      ++|.||++++.|+|.||+.|+..+|    ++++  |        .++|.||+|+++|++++++|+|+|..++ ..+||||
T Consensus       115 ~kg~di~~~v~isLee~~~G~~k~i~~~~~~~~g~G~~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~-~~~GDl~  193 (306)
T PRK10266        115 ARGHDIEIEVAVFLEETLTEHKRTISYNLPVYNAFGMIEQEIPKTLNVKIPAGVGNGQRIRLKGQGTPGENG-GPNGDLW  193 (306)
T ss_pred             CCCCceEEEEEEEHHHhcCCceEEEEEecccccCCCeEEEeeeEEEEEEECCCCcCCcEEEEecCCcCCCCC-CCCccEE
Confidence            4688999999999999999996554    4444  3        3578999999999999999999997543 4579999


Q ss_pred             EEEEEEcCCC-CCcchHHH
Q 013277          409 FTVKVTIPNR-IRYVYSPS  426 (446)
Q Consensus       409 v~~~v~~P~~-ls~~~~~~  426 (446)
                      |+|+|. |.. +..+...+
T Consensus       194 v~i~v~-ph~~f~r~g~DL  211 (306)
T PRK10266        194 LVIHIA-PHPLFDIVGQDL  211 (306)
T ss_pred             EEEEEc-CCCCeEEeCCce
Confidence            999999 643 34333333

>PLN03165 chaperone protein dnaJ-related; Provisional

Probab=98.65  E-value=4.8e-08  Score=81.89  Aligned_cols=62  Identities=35%  Similarity=0.719  Sum_probs=50.1

Q ss_pred             cceeecccccCCccccCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeecCCceEEEE
Q 013277          220 SHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRL  293 (446)
Q Consensus       220 ~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~  293 (446)
                      ...+.|..|+|+|..      +|+.|+|+|.+....   .+++++...|+.|+|+|+.   .|..|.|.|.+..
T Consensus        39 ~~~v~C~~C~GsG~~------~C~~C~G~G~v~~~~---~g~~q~~~~C~~C~G~Gk~---~C~~C~G~G~~~~  100 (111)
T PLN03165         39 ENTQPCFPCSGTGAQ------VCRFCVGSGNVTVEL---GGGEKEVSKCINCDGAGSL---TCTTCQGSGIQPR  100 (111)
T ss_pred             ccCCCCCCCCCCCCc------CCCCCcCcCeEEEEe---CCcEEEEEECCCCCCccee---eCCCCCCCEEEee
Confidence            345789999999973      899999999987543   2345566899999999985   4999999998754

>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.37  E-value=4.6e-07  Score=74.07  Aligned_cols=66  Identities=26%  Similarity=0.311  Sum_probs=56.9

Q ss_pred             ccccccceecccCcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchh
Q 013277           64 STYRFGRSVVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDD  132 (446)
Q Consensus        64 ~~~~~~~~~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~  132 (446)
                      ..++-++...+..+..-.||||+++++.+.||+|+|+.+...|||+.   +....-.+||||+++|...
T Consensus        43 ~~y~GGF~~kMsr~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~G---GSPYlAsKINEAKdlLe~~  108 (112)
T KOG0723|consen   43 AFYKGGFEPKMSRREAALILGVTPSLDKDKIKEAHRRIMLANHPDRG---GSPYLASKINEAKDLLEGT  108 (112)
T ss_pred             hhhhcccccccchHHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCC---CCHHHHHHHHHHHHHHhcc
Confidence            44455677778888999999999999999999999999999999998   5557778999999999753

>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.31  E-value=5.9e-07  Score=83.14  Aligned_cols=56  Identities=32%  Similarity=0.622  Sum_probs=52.0

Q ss_pred             cCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHh-hcchh
Q 013277           77 GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYE-VLSDD  132 (446)
Q Consensus        77 ~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~-vL~d~  132 (446)
                      ..+|.+|||...|+.+|++.||..|++++|||...+....+.|.+|.+||. ||+..
T Consensus        47 ~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq~~  103 (342)
T KOG0568|consen   47 MECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQEK  103 (342)
T ss_pred             HHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHHH
Confidence            479999999999999999999999999999999888888899999999998 88754

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.23  E-value=1.2e-06  Score=95.71  Aligned_cols=55  Identities=36%  Similarity=0.555  Sum_probs=47.2

Q ss_pred             cCcCchhhcCCCCC----CCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcch
Q 013277           75 ASGDYYATLGVPKS----ASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSD  131 (446)
Q Consensus        75 ~~~d~Y~iLgv~~~----as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d  131 (446)
                      ...+.|+||.|+-+    -..++||++|++||.+||||||  |+..+.|.++|+|||.|+.
T Consensus      1279 S~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKN--PEGRemFe~VnKAYE~L~~ 1337 (2235)
T KOG1789|consen 1279 SVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKN--PEGREMFERVNKAYELLSS 1337 (2235)
T ss_pred             chHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCC--chHHHHHHHHHHHHHHHHH
Confidence            34689999999753    2347899999999999999998  5778999999999999983

>TIGR02642 phage_xxxx uncharacterized phage protein

Probab=98.06  E-value=3.8e-06  Score=76.99  Aligned_cols=48  Identities=31%  Similarity=0.662  Sum_probs=38.8

Q ss_pred             ecCCCCCCcceEec--eeeeecCCceEEEEeeEEEEEeCCCCCCCCEEEEc
Q 013277          266 SVCPSCGGEGEVIS--EYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVV  314 (446)
Q Consensus       266 ~~C~~C~G~G~~~~--~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i~l~  314 (446)
                      .+|+.|+|+|+++.  ++|++|+|.|++..++++.+++ .|+.+|++|++.
T Consensus       100 ~~C~~C~G~G~~i~~~~~C~~C~G~G~v~~~~~~~~k~-~g~~~g~~it~~  149 (186)
T TIGR02642       100 CKCPRCRGTGLIQRRQRECDTCAGTGRFRPTVEDLLKS-FGVDSGAAIVLK  149 (186)
T ss_pred             CcCCCCCCeeEEecCCCCCCCCCCccEEeeeEEEEEEe-eeccCCceeeHH
Confidence            46666666666665  5788888888888899999999 999999999874

This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.

>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation

Probab=97.86  E-value=1.1e-05  Score=61.79  Aligned_cols=44  Identities=32%  Similarity=0.897  Sum_probs=31.8

Q ss_pred             ceeecccccCCccccCc---------ceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcc
Q 013277          221 HLETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEG  275 (446)
Q Consensus       221 ~~~~C~~C~G~G~~~~~---------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G  275 (446)
                      ....|+.|+|+|.....         ...+|+.|+|+|+++ ..          .+|+.|+|.|
T Consensus        14 ~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i-~~----------~~C~~C~G~g   66 (66)
T PF00684_consen   14 KPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKII-EK----------DPCKTCKGSG   66 (66)
T ss_dssp             T-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE--TS----------SB-SSSTTSS
T ss_pred             CCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEE-CC----------CCCCCCCCcC
Confidence            45689999999997543         277899999999987 22          7999999986

DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.

>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ

Probab=97.76  E-value=3.3e-05  Score=83.41  Aligned_cols=70  Identities=56%  Similarity=0.928  Sum_probs=66.3

Q ss_pred             cCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhhhhccccce
Q 013277           77 GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGV  146 (446)
Q Consensus        77 ~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~  146 (446)
                      +|||++|||+++|+.++||+|||+|+++||||+++.+.+.++|++|++||++|+||.+|+.||.||..+.
T Consensus         2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG~   71 (871)
T TIGR03835         2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRANYDKYGHDGV   71 (871)
T ss_pred             CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHhhhccccc
Confidence            5899999999999999999999999999999999887888999999999999999999999999987654

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.

>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]

Probab=97.65  E-value=3.3e-05  Score=80.56  Aligned_cols=68  Identities=31%  Similarity=0.736  Sum_probs=43.6

Q ss_pred             eecccccCCccccCcceeeCCCCCCccEEEEeee--------CCceeeee-eecCCCCCCcceEe-ceeeeecCCceEE
Q 013277          223 ETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQ--------TPFGLFSQ-VSVCPSCGGEGEVI-SEYCRKCSGEGRI  291 (446)
Q Consensus       223 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~--------~~~g~~~~-~~~C~~C~G~G~~~-~~~C~~C~G~G~v  291 (446)
                      ..|+.|+|+|.... ....|+.|+|+|..-....        ...-+|.. ..+|+.|.|+|.+. ...|+.|.|.|.+
T Consensus         3 ~~C~~C~g~G~i~v-~~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v~~~c~~c~G~gkv   80 (715)
T COG1107           3 KKCPECGGKGKIVV-GEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTVYDTCPECGGTGKV   80 (715)
T ss_pred             ccccccCCCceEee-eeeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEEEeecccCCCceeE
Confidence            46888888887543 2557888888887621110        00011222 35888888888765 4788888888877

>PLN03165 chaperone protein dnaJ-related; Provisional

Probab=96.83  E-value=0.00097  Score=56.10  Aligned_cols=41  Identities=29%  Similarity=0.808  Sum_probs=32.8

Q ss_pred             ecccccCCccccCc------ceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEec
Q 013277          224 TCEVCTGTGAKMGS------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVIS  279 (446)
Q Consensus       224 ~C~~C~G~G~~~~~------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~  279 (446)
                      .|+.|+|+|.....      ...+|+.|+|+|+.               .|+.|.|+|.+.+
T Consensus        54 ~C~~C~G~G~v~~~~~g~~q~~~~C~~C~G~Gk~---------------~C~~C~G~G~~~~  100 (111)
T PLN03165         54 VCRFCVGSGNVTVELGGGEKEVSKCINCDGAGSL---------------TCTTCQGSGIQPR  100 (111)
T ss_pred             CCCCCcCcCeEEEEeCCcEEEEEECCCCCCccee---------------eCCCCCCCEEEee
Confidence            79999999986321      26689999999963               4999999998754

>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=96.72  E-value=0.002  Score=56.77  Aligned_cols=66  Identities=24%  Similarity=0.450  Sum_probs=52.8

Q ss_pred             cCcCchhhcCCCC--CCCHHHHHHHHHHHHHHhCCCCCCC------cchHHHHHHHHHHHhhcchhhhhhhhhh
Q 013277           75 ASGDYYATLGVPK--SASGKEIKAAYRKLARQYHPDVNKE------PGATEKFKEISAAYEVLSDDKKRAMYDQ  140 (446)
Q Consensus        75 ~~~d~Y~iLgv~~--~as~~eIk~ayr~l~~~~HPD~~~~------~~~~~~f~~i~~Ay~vL~d~~~r~~yd~  140 (446)
                      ...+||.++|...  ...++.++..|--..++.|||+...      ..+.+.-.++++||.+|.||.+|+.|=.
T Consensus         6 ~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yil   79 (168)
T KOG3192|consen    6 SPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLL   79 (168)
T ss_pred             hHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            4568999997653  4566777778999999999998432      2366778999999999999999999854

>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]

Probab=96.51  E-value=0.0023  Score=67.18  Aligned_cols=45  Identities=33%  Similarity=0.920  Sum_probs=36.5

Q ss_pred             eeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEec---------------------eeeeecCCceEEEE
Q 013277          239 MRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVIS---------------------EYCRKCSGEGRIRL  293 (446)
Q Consensus       239 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~---------------------~~C~~C~G~G~v~~  293 (446)
                      ..+|+.|+|+|++....          ..|+.|+|+|+...                     -+|..|+|+|.++.
T Consensus         2 ~~~C~~C~g~G~i~v~~----------e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v   67 (715)
T COG1107           2 IKKCPECGGKGKIVVGE----------EECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTV   67 (715)
T ss_pred             CccccccCCCceEeeee----------eecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEE
Confidence            35899999999986543          78999999998622                     18999999999854

>TIGR02642 phage_xxxx uncharacterized phage protein

Probab=96.44  E-value=0.0021  Score=59.05  Aligned_cols=30  Identities=30%  Similarity=0.784  Sum_probs=18.5

Q ss_pred             eeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEec
Q 013277          240 RICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVIS  279 (446)
Q Consensus       240 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~  279 (446)
                      .+|+.|+|+|.+++..          .+|+.|+|+|++..
T Consensus       100 ~~C~~C~G~G~~i~~~----------~~C~~C~G~G~v~~  129 (186)
T TIGR02642       100 CKCPRCRGTGLIQRRQ----------RECDTCAGTGRFRP  129 (186)
T ss_pred             CcCCCCCCeeEEecCC----------CCCCCCCCccEEee
Confidence            3566666666665422          46777777776654

This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.

>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]

Probab=96.41  E-value=0.0033  Score=61.33  Aligned_cols=31  Identities=35%  Similarity=0.761  Sum_probs=17.9

Q ss_pred             cCCCCCCcceEeceeeeecCCceEEEEeeEEEEE
Q 013277          267 VCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVK  300 (446)
Q Consensus       267 ~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~  300 (446)
                      .|++|.|+|.   .+|.+|.|.|....-..+.|.
T Consensus       247 ~C~tC~grG~---k~C~TC~gtgsll~~t~~vV~  277 (406)
T KOG2813|consen  247 ECHTCKGRGK---KPCTTCSGTGSLLNYTRIVVY  277 (406)
T ss_pred             cCCcccCCCC---cccccccCccceeeeEEEEEE
Confidence            3444444443   477788888776655444444

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=95.81  E-value=0.0057  Score=56.00  Aligned_cols=53  Identities=42%  Similarity=0.552  Sum_probs=45.6

Q ss_pred             cCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--------cchHHHHHHHHHHHhhc
Q 013277           77 GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE--------PGATEKFKEISAAYEVL  129 (446)
Q Consensus        77 ~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~--------~~~~~~f~~i~~Ay~vL  129 (446)
                      .+.|.+|++...+...+|+++|+++...+|||+-..        ..+.+++++|++||+.+
T Consensus       113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~  173 (174)
T COG1076         113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI  173 (174)
T ss_pred             hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence            689999999999999999999999999999997532        23677888999998753

>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]

Probab=95.43  E-value=0.0071  Score=59.09  Aligned_cols=25  Identities=32%  Similarity=0.852  Sum_probs=20.4

Q ss_pred             eecCCCCCCcceEeceeeeecCCceEEE
Q 013277          265 VSVCPSCGGEGEVISEYCRKCSGEGRIR  292 (446)
Q Consensus       265 ~~~C~~C~G~G~~~~~~C~~C~G~G~v~  292 (446)
                      ...|..|+|+|+   ..|.+|.|.|.+.
T Consensus       234 ~~~C~~C~G~G~---~~C~tC~grG~k~  258 (406)
T KOG2813|consen  234 HDLCYMCHGRGI---KECHTCKGRGKKP  258 (406)
T ss_pred             cchhhhccCCCc---ccCCcccCCCCcc
Confidence            368999999997   5799999998763

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=94.75  E-value=0.021  Score=52.29  Aligned_cols=62  Identities=32%  Similarity=0.518  Sum_probs=47.6

Q ss_pred             chhhcCCCCCCC--HHHHHHHHHHHHHHhCCCCCCCcc------hHHHHHHHHHHHhhcchhhhhhhhhh
Q 013277           79 YYATLGVPKSAS--GKEIKAAYRKLARQYHPDVNKEPG------ATEKFKEISAAYEVLSDDKKRAMYDQ  140 (446)
Q Consensus        79 ~Y~iLgv~~~as--~~eIk~ayr~l~~~~HPD~~~~~~------~~~~f~~i~~Ay~vL~d~~~r~~yd~  140 (446)
                      +...+|..+.+.  .+.++..|+.+++.||||+....+      +.+.+..++.||.+|.||.+|+.|=.
T Consensus         3 ~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~l   72 (174)
T COG1076           3 GFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLL   72 (174)
T ss_pred             cccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            444555555443  366899999999999999976432      33568899999999999999998865

>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]

Probab=94.64  E-value=0.036  Score=58.19  Aligned_cols=26  Identities=31%  Similarity=0.419  Sum_probs=23.3

Q ss_pred             CCCHHHHHHHHHHHHHHhCCCCCCCc
Q 013277           88 SASGKEIKAAYRKLARQYHPDVNKEP  113 (446)
Q Consensus        88 ~as~~eIk~ayr~l~~~~HPD~~~~~  113 (446)
                      =.+.+++||||||..+..||||.+..
T Consensus       399 LVtp~~VKKaYrKA~L~VHPDKlqq~  424 (453)
T KOG0431|consen  399 LVTPAQVKKAYRKAVLCVHPDKLQQK  424 (453)
T ss_pred             ccCHHHHHHHHHhhhheeCcccccCC
Confidence            45889999999999999999998764

>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []

Probab=94.58  E-value=0.075  Score=45.96  Aligned_cols=59  Identities=22%  Similarity=0.255  Sum_probs=44.2

Q ss_pred             ccCcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhh
Q 013277           74 CASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKR  135 (446)
Q Consensus        74 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~r  135 (446)
                      ++-.....||||++.++.+||.+.|.+|-...+|++.   +....=.+|..|.|.|..+.+.
T Consensus        55 Mtl~EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kG---GSfYLQSKV~rAKErl~~El~~  113 (127)
T PF03656_consen   55 MTLDEARQILNVKEELSREEIQKRYKHLFKANDPSKG---GSFYLQSKVFRAKERLEQELKE  113 (127)
T ss_dssp             --HHHHHHHHT--G--SHHHHHHHHHHHHHHT-CCCT---S-HHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHcCCCCccCHHHHHHHHHHHHhccCCCcC---CCHHHHHHHHHHHHHHHHHHHH
Confidence            3445789999999999999999999999999999976   6777778999999999866543

In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.

>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=93.40  E-value=0.14  Score=50.81  Aligned_cols=107  Identities=21%  Similarity=0.428  Sum_probs=61.6

Q ss_pred             eeEeeeeecccccccceeeeeccceeecccccCCccccC-----cceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCC
Q 013277          198 LRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMG-----SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCG  272 (446)
Q Consensus       198 i~~~l~ltlee~~~G~~k~~~~~~~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~  272 (446)
                      +.+.+...++.. .|.. .........|..|.|+|....     ....+|..|+|.|.+..            ..|..|.
T Consensus       159 ~~~~~~~~~~t~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~c~~~~~~~~------------~~c~~~~  224 (288)
T KOG0715|consen  159 ISFNVLSDCETC-FGSG-AEEGAKRESCKTCSGRGLVSNPKEDPFILYTCSYCLGRGLVLR------------DNCQACS  224 (288)
T ss_pred             eEEEeecccccc-cCcC-cccccccccchhhhCcccccccccCCcceeecccccccceecc------------chHHHhh
Confidence            445554444433 3332 334456789999999993221     12337999999999876            4599999


Q ss_pred             CcceEeceeeeecCCceEEEEeeEEEEEeCCCCCCCCEEEEccCCCCC
Q 013277          273 GEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAG  320 (446)
Q Consensus       273 G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~  320 (446)
                      |.|.+...+-......+.+....+|++..+...  --.+++.=..++.
T Consensus       225 g~~~v~~~k~i~i~~~~g~~~~~~l~~~~~~~~--~l~v~~~v~~~~~  270 (288)
T KOG0715|consen  225 GAGQVRRAKDIMIVLPAGVRSADTLRFAGHGND--DLFVRLIVAKSPS  270 (288)
T ss_pred             cchhhhhheeEEeecCcccccccEEEEecCCcc--eEEEEEEeccCcc
Confidence            999665543333333444444445555444333  3334444444443

>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=88.31  E-value=0.54  Score=45.56  Aligned_cols=52  Identities=33%  Similarity=0.631  Sum_probs=37.1

Q ss_pred             eeecccccCCccccCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeecC
Q 013277          222 LETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCS  286 (446)
Q Consensus       222 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~  286 (446)
                      ...|..|.|.++      .+|..|+|+-+++.....    .....+|..|+-.|.+.   |+.|.
T Consensus       229 ~~~C~~CGg~rF------lpC~~C~GS~kv~~~~~~----~~~~~rC~~CNENGLvr---Cp~Cs  280 (281)
T KOG2824|consen  229 GGVCESCGGARF------LPCSNCHGSCKVHEEEED----DGGVLRCLECNENGLVR---CPVCS  280 (281)
T ss_pred             CCcCCCcCCcce------EecCCCCCceeeeeeccC----CCcEEECcccCCCCcee---CCccC
Confidence            367999999875      479999999988763111    12237899999999874   55553

>PF13446 RPT: A repeated domain in UCH-protein

Probab=84.96  E-value=1.5  Score=32.69  Aligned_cols=45  Identities=18%  Similarity=0.366  Sum_probs=32.9

Q ss_pred             cCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcch
Q 013277           77 GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSD  131 (446)
Q Consensus        77 ~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d  131 (446)
                      .+.|+.|||+++.+++.|-.+|+.... -.|         .....+.+|..++.+
T Consensus         5 ~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~-~~P---------~~~~~~r~AL~~Ia~   49 (62)
T PF13446_consen    5 EEAYEILGIDEDTDDDFIISAFQSKVN-DDP---------SQKDTLREALRVIAE   49 (62)
T ss_pred             HHHHHHhCcCCCCCHHHHHHHHHHHHH-cCh---------HhHHHHHHHHHHHHH
Confidence            358999999999999999999998876 122         234445566666654

>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised

Probab=82.83  E-value=2.6  Score=39.22  Aligned_cols=40  Identities=35%  Similarity=0.434  Sum_probs=31.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchh
Q 013277           86 PKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDD  132 (446)
Q Consensus        86 ~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~  132 (446)
                      +++|+.|||++|+.++..+|--|       .+.-.+|..|||.+.-.
T Consensus         1 S~~ASfeEIq~Arn~ll~~y~gd-------~~~~~~IEaAYD~ILM~   40 (194)
T PF11833_consen    1 SEDASFEEIQAARNRLLAQYAGD-------EKSREAIEAAYDAILME   40 (194)
T ss_pred             CCCCCHHHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHHHHH
Confidence            57999999999999999988433       45667788999866533

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.

>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs

Probab=81.62  E-value=1.5  Score=38.98  Aligned_cols=47  Identities=34%  Similarity=0.671  Sum_probs=31.5

Q ss_pred             eeecccccCCccccCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceE
Q 013277          222 LETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEV  277 (446)
Q Consensus       222 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~  277 (446)
                      ...|..|.|.+.      .+|..|+|+=+++.......+   ....|+.||-.|.+
T Consensus        99 ~~~C~~Cgg~rf------v~C~~C~Gs~k~~~~~~~~~~---~~~rC~~Cnengl~  145 (147)
T cd03031          99 GGVCEGCGGARF------VPCSECNGSCKVFAENATAAG---GFLRCPECNENGLV  145 (147)
T ss_pred             CCCCCCCCCcCe------EECCCCCCcceEEeccCcccc---cEEECCCCCccccc
Confidence            356999998775      579999999888654311011   12678888877754

This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.

>COG5552 Uncharacterized conserved protein [Function unknown]

Probab=80.62  E-value=5.4  Score=30.86  Aligned_cols=47  Identities=13%  Similarity=0.194  Sum_probs=34.4

Q ss_pred             cCcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHH
Q 013277           75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKE  121 (446)
Q Consensus        75 ~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~  121 (446)
                      |++|--+++|+++-|+++||+.|-++.+++..--..|+....+.|..
T Consensus         1 MCRNIk~LfnfdPPAT~~EvrdAAlQfVRKlSGtT~PS~~n~~AFe~   47 (88)
T COG5552           1 MCRNIKELFNFDPPATPVEVRDAALQFVRKLSGTTHPSAANAEAFEA   47 (88)
T ss_pred             CccchHHHhCCCCCCCcHHHHHHHHHHHHHhcCCCCcchhhHHHHHH
Confidence            45667788999999999999999999999864444433344455543

>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=80.01  E-value=1.7  Score=42.23  Aligned_cols=38  Identities=32%  Similarity=0.848  Sum_probs=31.0

Q ss_pred             eeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEec--------eeeeecCCceEEE
Q 013277          240 RICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVIS--------EYCRKCSGEGRIR  292 (446)
Q Consensus       240 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~--------~~C~~C~G~G~v~  292 (446)
                      ..|..|+|.+.+               +|..|+|.-++..        .+|..|+=.|.++
T Consensus       230 ~~C~~CGg~rFl---------------pC~~C~GS~kv~~~~~~~~~~~rC~~CNENGLvr  275 (281)
T KOG2824|consen  230 GVCESCGGARFL---------------PCSNCHGSCKVHEEEEDDGGVLRCLECNENGLVR  275 (281)
T ss_pred             CcCCCcCCcceE---------------ecCCCCCceeeeeeccCCCcEEECcccCCCCcee
Confidence            479999999874               7999999998876        3899998776553

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	446
1hdj_A	77	Human Hsp40 (Hdj-1), Nmr Length = 77		7e-21
2dn9_A	79	Solution Structure Of J-Domain From The Dnaj Homolo		5e-18
2kqx_A	73	Nmr Structure Of The J-Domain (Residues 2-72) In Th		6e-18
3lz8_A	329	Structure Of A Putative Chaperone Dnaj From Klebsie		2e-17
3lz8_A	329	Structure Of A Putative Chaperone Dnaj From Klebsie		1e-04
1bq0_A	103	J-Domain (Residues 1-77) Of The Escherichia Coli N-		8e-17
1xbl_A	107	Nmr Structure Of The J-Domain (Residues 2-76) In Th		1e-16
2ctp_A	78	Solution Structure Of J-Domain From Human Dnaj Subf		1e-16
1bqz_A	77	J-Domain (Residues 1-77) Of The Escherichia Coli N-		2e-16
2cug_A	88	Solution Structure Of The J Domain Of The Pseudo Dn		3e-16
2ctr_A	88	Solution Structure Of J-Domain From Human Dnaj Subf		1e-15
2lgw_A	99	Solution Structure Of The J Domain Of Hsj1a Length		2e-15
2och_A	73	J-domain Of Dnj-12 From Caenorhabditis Elegans Leng		2e-15
2lo1_A	71	Nmr Structure Of The Protein Bc008182, A Dnaj-Like		4e-15
3apo_A	780	Crystal Structure Of Full-Length Erdj5 Length = 780		2e-14
3apq_A	210	Crystal Structure Of J-Trx1 Fragment Of Erdj5 Lengt		2e-14
2ej7_A	82	Solution Structure Of The Dnaj Domain Of The Human		3e-14
2o37_A	92	J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From S		6e-14
2dmx_A	92	Solution Structure Of The J Domain Of Dnaj Homolog		8e-14
2ctw_A	109	Solution Structure Of J-Domain From Mouse Dnaj Subf		1e-13
1exk_A	79	Solution Structure Of The Cysteine-Rich Domain Of T		7e-13
1nlt_A	248	The Crystal Structure Of Hsp40 Ydj1 Length = 248		4e-10
2ctt_A	104	Solution Structure Of Zinc Finger Domain From Human		1e-09
2y4u_A	450	Crystal Structure Of Human P58(Ipk) In Space Group		2e-07
2y4t_A	450	Crystal Structure Of The Human Co-Chaperone P58(Ipk		2e-07
2qsa_A	109	Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2		3e-07
2ctq_A	112	Solution Structure Of J-Domain From Human Dnaj Subf		4e-06
2yua_A	99	Solution Structure Of The Dnaj Domain From Human Wi		8e-06
1wjz_A	94	Soluiotn Structure Of J-Domain Of Mouse Dnaj Like P		9e-05
2l6l_A	155	Solution Structure Of Human J-Protein Co-Chaperone,		1e-04
2b26_A	173	The Crystal Structure Of The Protein Complex Of Yea		5e-04
2ys8_A	90	Solution Structure Of The Dnaj-Like Domain From Hum		6e-04
1c3g_A	170	S. Cerevisiae Heat Shock Protein 40 Sis1 Length = 1		7e-04

>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr Length = 77

Iteration: 1
 Score = 98.6 bits (244), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 45/72 (62%), Positives = 58/72 (80%)
Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
           DYY TLG+ + AS +EIK AYR+ A +YHPD NKEPGA EKFKEI+ AY+VLSD +KR +
Sbjct: 4   DYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREI 63
Query: 138 YDQYGEAGVKST 149
           +D+YGE G+K +
Sbjct: 64  FDRYGEEGLKGS 75

>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog, Human Tid1 Protein Length = 79

Iteration: 1
 Score = 89.0 bits (219), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 43/69 (62%), Positives = 54/69 (78%), Gaps = 1/69 (1%)
Query: 75  ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDK 133
           +SGDYY  LGVP++AS KEIK AY +LA++YHPD NK +P A EKF +++ AYEVLSD+ 
Sbjct: 5   SSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEV 64
Query: 134 KRAMYDQYG 142
           KR  YD YG
Sbjct: 65  KRKQYDAYG 73

>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The Escherichia Coli Cbpa Length = 73

Iteration: 1
 Score = 88.6 bits (218), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 38/63 (60%), Positives = 50/63 (79%)
Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
           DYYA +GV  +   K IK AYR+LAR+YHPDV+KEP A  +FKE++ A+EVLSD+++RA 
Sbjct: 6   DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 65
Query: 138 YDQ 140
           YDQ
Sbjct: 66  YDQ 68

>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A Resolution. Length = 329

Iteration: 1
 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/268 (28%), Positives = 116/268 (43%), Gaps = 52/268 (19%)
Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
           DYYA LGV  +   K IK AYR+LAR+YHPDV+KE  A  KFK+++ A+EVL D+++RA 
Sbjct: 29  DYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAE 88
Query: 138 YDQY----GEAGVKSTVGGGSSAYTTNPF-DLFETXXXXXXXXXXXXNQTGFRTRRRSTV 192
           YDQ      + G          +Y+   F D+F +                   RRR   
Sbjct: 89  YDQLWQHRNDPGFGRQRQTHEQSYSQQDFDDIFSSMFGQQA-----------HQRRRQHA 137
Query: 193 TKGEDLRYDIVLEFSESIFGAEKEFELSH---------------LETCEVCTGTGAKMGS 237
            +G DL  ++ +   E++  AE+   +S+                +T  V    G   G 
Sbjct: 138 ARGHDLEIEVAVFLEETL--AEQTRTISYNLPVYNVFGMIESETPKTLNVKIPAGVVDGQ 195
Query: 238 KMRI--CSTCGGRGQVMRTDQTPFG-LFSQVSVCPS-----CGGEGEVISEYCRKCSGEG 289
           ++R+    T G  G        P G L+  + + P       G   E++       +  G
Sbjct: 196 RIRLKGQGTPGENG-------GPNGDLWLVIHIAPHPLFDIVGHNLEIVLPLAPWEAALG 248
Query: 290 R----IRLKKNIKVKVPPGVSTGSILRV 313
                  LK++I + VPPG   G  LR+
Sbjct: 249 AKVTVPTLKESILLTVPPGSQAGQRLRI 276

>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A Resolution. Length = 329

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 3/124 (2%)
Query: 295 KNIKVKVPPGVSTGSILRVVXXXXXXXXXXXXXDLYVYLDVEEIPGIQRDGIDLFSTISI 354
           K + VK+P GV  G  +R+              DL++ + +   P     G +L   + +
Sbjct: 181 KTLNVKIPAGVVDGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGHNLEIVLPL 240
Query: 355 SYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVT 414
           +  +A +G  V V T++    L VPPG+Q G  L +  KG   L   +  GD    +K+ 
Sbjct: 241 APWEAALGAKVTVPTLKESILLTVPPGSQAGQRLRIKGKG---LVSKTHTGDLFAVIKIV 297
Query: 415 IPNR 418
           +P +
Sbjct: 298 MPTK 301

>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-104) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 103

Iteration: 1
 Score = 85.1 bits (209), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 41/72 (56%), Positives = 51/72 (70%), Gaps = 1/72 (1%)
Query: 75  ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDK 133
           A  DYY  LGV K+A  +EI+ AY++LA +YHPD N+ +  A  KFKEI  AYEVL+D +
Sbjct: 1   AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQ 60
Query: 134 KRAMYDQYGEAG 145
           KRA YDQYG A 
Sbjct: 61  KRAAYDQYGHAA 72

>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The Escherichia Coli N-Terminal Fragment (Residues 2-108) Of The Molecular Chaperone Dnaj, 20 Structures Length = 107

Iteration: 1
 Score = 84.3 bits (207), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/72 (56%), Positives = 51/72 (70%), Gaps = 1/72 (1%)
Query: 75  ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDK 133
           A  DYY  LGV K+A  +EI+ AY++LA +YHPD N+ +  A  KFKEI  AYEVL+D +
Sbjct: 1   AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQ 60
Query: 134 KRAMYDQYGEAG 145
           KRA YDQYG A 
Sbjct: 61  KRAAYDQYGHAA 72

>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 12 Length = 78

Iteration: 1
 Score = 84.0 bits (206), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 39/68 (57%), Positives = 50/68 (73%)
Query: 75  ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKK 134
           +SGDYY  LGV + AS +++K AYR+LA ++HPD N  PGATE FK I  AY VLS+ +K
Sbjct: 5   SSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEK 64
Query: 135 RAMYDQYG 142
           R  YDQ+G
Sbjct: 65  RKQYDQFG 72

>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-78) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 77

Iteration: 1
 Score = 84.0 bits (206), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/72 (56%), Positives = 51/72 (70%), Gaps = 1/72 (1%)
Query: 75  ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDK 133
           A  DYY  LGV K+A  +EI+ AY++LA +YHPD N+ +  A  KFKEI  AYEVL+D +
Sbjct: 1   AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQ 60
Query: 134 KRAMYDQYGEAG 145
           KRA YDQYG A 
Sbjct: 61  KRAAYDQYGHAA 72

>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj Protein, Mouse Hypothetical Mkiaa0962 Length = 88

Iteration: 1
 Score = 83.2 bits (204), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/65 (56%), Positives = 51/65 (78%)
Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
           D Y  LGV ++AS  +IK AY+KLAR++HPD NK+PGA ++F +IS AYE+LS+++KR  
Sbjct: 18  DPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTN 77
Query: 138 YDQYG 142
           YD YG
Sbjct: 78  YDHYG 82

>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 9 Length = 88

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 40/73 (54%), Positives = 48/73 (65%)
Query: 79  YYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMY 138
           YY  LGVPKSAS ++IK A+ KLA +YHPD NK P A  KF+EI+ AYE LSD  +R  Y
Sbjct: 9   YYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEY 68
Query: 139 DQYGEAGVKSTVG 151
           D  G +   S  G
Sbjct: 69  DTLGHSAFTSGKG 81

>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a Length = 99

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/80 (52%), Positives = 53/80 (66%), Gaps = 2/80 (2%)
Query: 79  YYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPG--ATEKFKEISAAYEVLSDDKKRA 136
           YY  L VP+SAS  +IK AYR+ A Q+HPD N +    A +KFKE++ AYEVLSD  KR 
Sbjct: 4   YYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKRE 63
Query: 137 MYDQYGEAGVKSTVGGGSSA 156
           +YD+YG  G+  T  G S A
Sbjct: 64  IYDRYGREGLTGTGTGPSRA 83

>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans Length = 73

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/65 (60%), Positives = 47/65 (72%), Gaps = 2/65 (3%)
Query: 79  YYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMY 138
           YY  LGV   AS  E+K AYRK+A ++HPD  K P   E+FK+IS AYEVLSD+KKR +Y
Sbjct: 10  YYDVLGVKPDASDNELKKAYRKMALKFHPD--KNPDGAEQFKQISQAYEVLSDEKKRQIY 67
Query: 139 DQYGE 143
           DQ GE
Sbjct: 68  DQGGE 72

>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain From Homo Sapiens Length = 71

Iteration: 1
 Score = 79.3 bits (194), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 40/65 (61%), Positives = 48/65 (73%), Gaps = 2/65 (3%)
Query: 79  YYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMY 138
           YY  LGV  +A+ +E+K AYRKLA +YHPD  K P   EKFK+IS AYEVLSD KKR +Y
Sbjct: 8   YYDVLGVKPNATQEELKKAYRKLALKYHPD--KNPNEGEKFKQISQAYEVLSDAKKRELY 65
Query: 139 DQYGE 143
           D+ GE
Sbjct: 66  DKGGE 70

>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5 Length = 780

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 56/88 (63%), Gaps = 1/88 (1%)
Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVN-KEPGATEKFKEISAAYEVLSDDKKRA 136
           ++Y+ LGV K+AS +EI+ A++KLA + HPD N   P A   F +I+ AYEVL D+  R 
Sbjct: 22  NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRK 81
Query: 137 MYDQYGEAGVKSTVGGGSSAYTTNPFDL 164
            YD+YGE G++   GG   +++   +D 
Sbjct: 82  KYDKYGEKGLEDNQGGQYESWSYYRYDF 109

>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5 Length = 210

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 56/88 (63%), Gaps = 1/88 (1%)
Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVN-KEPGATEKFKEISAAYEVLSDDKKRA 136
           ++Y+ LGV K+AS +EI+ A++KLA + HPD N   P A   F +I+ AYEVL D+  R 
Sbjct: 3   NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRK 62
Query: 137 MYDQYGEAGVKSTVGGGSSAYTTNPFDL 164
            YD+YGE G++   GG   +++   +D 
Sbjct: 63  KYDKYGEKGLEDNQGGQYESWSYYRYDF 90

>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein Hcg3, A Hypothetical Protein Tmp_locus_21 Length = 82

Iteration: 1
 Score = 76.6 bits (187), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/67 (56%), Positives = 48/67 (71%), Gaps = 2/67 (2%)
Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE--PGATEKFKEISAAYEVLSDDKKR 135
           DYY  L VP+ AS + IK AYRKLA ++HPD N E    A  +FK+++ AYEVLSD KKR
Sbjct: 10  DYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKR 69
Query: 136 AMYDQYG 142
            +YD+YG
Sbjct: 70  DIYDRYG 76

>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From Saccharomyces Cerevisiae Length = 92

Iteration: 1
 Score = 75.5 bits (184), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 38/69 (55%), Positives = 48/69 (69%), Gaps = 2/69 (2%)
Query: 80  YATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYD 139
           Y  LGV  SA+ +E+K  YRK A +YHPD  K  G TEKFKEIS A+E+L+D +KR +YD
Sbjct: 11  YDLLGVSPSANEQELKKGYRKAALKYHPD--KPTGDTEKFKEISEAFEILNDPQKREIYD 68
Query: 140 QYGEAGVKS 148
           QYG    +S
Sbjct: 69  QYGLEAARS 77

>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog Subfamily B Member 8 Length = 92

Iteration: 1
 Score = 75.1 bits (183), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 40/76 (52%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 69  GRSVVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVN--KEPGATEKFKEISAAY 126
           G S      +YY  LGV  SAS ++IK AYRKLA ++HPD N   +  A +KFK +S AY
Sbjct: 1   GSSGSSGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAY 60
Query: 127 EVLSDDKKRAMYDQYG 142
           EVLSD KKR++YD+ G
Sbjct: 61  EVLSDSKKRSLYDRAG 76

>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C Menber 5 Length = 109

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 36/78 (46%), Positives = 53/78 (67%), Gaps = 1/78 (1%)
Query: 70  RSVVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEV 128
           RS+  +    Y  LG+ K+A+  +IK +YRKLA +YHPD N + P A +KFKEI+ A+ +
Sbjct: 10  RSLSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAI 69
Query: 129 LSDDKKRAMYDQYGEAGV 146
           L+D  KR +YD+YG  G+
Sbjct: 70  LTDATKRNIYDKYGSLGL 87

>pdb|1EXK|A Chain A, Solution Structure Of The Cysteine-Rich Domain Of The Escherichia Coli Chaperone Protein Dnaj Length = 79

Iteration: 1
 Score = 71.6 bits (174), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 34/77 (44%), Positives = 44/77 (57%), Gaps = 4/77 (5%)
Query: 215 KEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGE 274
           KE  +  LE C+VC G+GAK G++ + C TC G GQV    Q   G F+    CP C G 
Sbjct: 4   KEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQV----QMRQGFFAVQQTCPHCQGR 59
Query: 275 GEVISEYCRKCSGEGRI 291
           G +I + C KC G GR+
Sbjct: 60  GTLIKDPCNKCHGHGRV 76

>pdb|1NLT|A Chain A, The Crystal Structure Of Hsp40 Ydj1 Length = 248

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 99/221 (44%), Gaps = 17/221 (7%)
Query: 186 TRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTC 245
            +R     +G+D++++I     E   G   +  L+    C+ C G G K G+ ++ C++C
Sbjct: 2   AQRPRGPQRGKDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGA-VKKCTSC 60
Query: 246 GGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVIS--EYCRKCSGEGRIRLKKNIKVKVPP 303
            G+G    T Q    +    + C  C G G++I   + C+ C+G+     +K ++V V P
Sbjct: 61  NGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVENERKILEVHVEP 120
Query: 304 GVSTGSILRVVXXXXXXXXXXXXXDLYVYLDVEEIP--GIQRDGIDLFSTISISYLDAIM 361
           G+  G   R+V                V++ V E P    +RDG DL     I  L AI 
Sbjct: 121 GMKDGQ--RIVFKGEADQAPDVIPGDVVFI-VSERPHKSFKRDGDDLVYEAEIDLLTAIA 177
Query: 362 GTVVKVKTVEGISELQVPPGTQPGDVL------VLAKKGAP 396
           G    ++ V G   L+V  G  PG+V+      V+  KG P
Sbjct: 178 GGEFALEHVSG-DWLKV--GIVPGEVIAPGMRKVIEGKGMP 215

>pdb|2CTT|A Chain A, Solution Structure Of Zinc Finger Domain From Human Dnaj Subfamily A Menber 3 Length = 104

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 51/92 (55%), Gaps = 4/92 (4%)
Query: 204 LEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFS 263
           L F+++  G  KEF ++ ++TCE C G G + G+K++ C  CGG G  M T  T  G F 
Sbjct: 10  LTFNQAAKGVNKEFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSG--METINT--GPFV 65
Query: 264 QVSVCPSCGGEGEVISEYCRKCSGEGRIRLKK 295
             S C  CGG G +I   C  C G G+ + KK
Sbjct: 66  MRSTCRRCGGRGSIIISPCVVCRGAGQAKQKK 97

>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312 Length = 450

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 43/66 (65%), Gaps = 4/66 (6%)
Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPD----VNKEPGATEKFKEISAAYEVLSDDK 133
           DYY  LGV ++A  +EI  AYRKLA Q+HPD      ++  A +KF +I+AA EVLSD +
Sbjct: 383 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPE 442
Query: 134 KRAMYD 139
            R  +D
Sbjct: 443 XRKKFD 448

>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk) Length = 450

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 43/66 (65%), Gaps = 4/66 (6%)
Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPD----VNKEPGATEKFKEISAAYEVLSDDK 133
           DYY  LGV ++A  +EI  AYRKLA Q+HPD      ++  A +KF +I+AA EVLSD +
Sbjct: 383 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPE 442
Query: 134 KRAMYD 139
            R  +D
Sbjct: 443 MRKKFD 448

>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2 Precursor From C.Elegans Length = 109

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/84 (38%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 63  SSTYRFGRSVVCASGDYYATLGVPKSASGKE-IKAAYRKLARQYHPD--VNKEPG--ATE 117
           S+   F   + C   + Y  L V +    K+ +  AYR LAR++HPD   NKE    A E
Sbjct: 1   SNAVGFAPELYCGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEE 60
Query: 118 KFKEISAAYEVLSDDKKRAMYDQY 141
           +F+ I+ AYE L DD+ +  YD Y
Sbjct: 61  RFRVIATAYETLKDDEAKTNYDYY 84

>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily C Menber 12 Length = 112

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRA 136
           DYY  LG  + +S ++I A ++  A + HPD + E P A E F+++  A E+L++++ RA
Sbjct: 21  DYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRA 80
Query: 137 MYDQY 141
            YD +
Sbjct: 81  RYDHW 85

>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human Williams- Beuren Syndrome Chromosome Region 18 Protein Length = 99

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 28/62 (45%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 80  YATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPG-ATEKFKEISAAYEVLSDDKKRAMY 138
           Y  LGVP +A+  +IKAAY +    YHPD N     A E+F  IS AY VL     R  Y
Sbjct: 20  YDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKY 79
Query: 139 DQ 140
           D+
Sbjct: 80  DR 81

>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like Protein Length = 94

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE--PGAT-----EKFKEISAAYEVLS 130
           D+Y+ LG   SA+  ++K  Y+KL   YHPD      P  T     +KF EI  A+++L 
Sbjct: 17  DWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILG 76
Query: 131 DDKKRAMYD 139
           +++ +  YD
Sbjct: 77  NEETKKKYD 85

>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4 Length = 155

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE--PGAT-----EKFKEISAAYEVLS 130
           D+Y+ LG   SA+  ++K  Y+KL   YHPD      P  T     +KF EI  A+++L 
Sbjct: 11  DWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILG 70
Query: 131 DDKKRAMYD 139
           +++ +  YD
Sbjct: 71  NEETKREYD 79

>pdb|2B26|A Chain A, The Crystal Structure Of The Protein Complex Of Yeast Hsp40 Sis1 And Hsp70 Ssa1 Length = 173

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/127 (23%), Positives = 54/127 (42%), Gaps = 7/127 (5%)
Query: 294 KKNIKVKVPPGVSTGSILRVVXXXXXXXXXXXXXDLYVYLDVEEIPGIQRDGIDLFSTIS 353
           K  I +++ PG   G+ +                 L   +  +  P  +RDG DL  T+ 
Sbjct: 35  KTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHPNFKRDGDDLIYTLP 94
Query: 354 ISYLDAIMGTVVKVKTVEG----ISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLF 409
           +S+ ++++G    ++T++G    +S +Q     QP        +G P    PS RG+ + 
Sbjct: 95  LSFKESLLGFSKTIQTIDGRTLPLSRVQP---VQPSQTSTYPGQGMPTPKNPSQRGNLIV 151
Query: 410 TVKVTIP 416
             KV  P
Sbjct: 152 KYKVDYP 158

>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human Ras- Associated Protein Rap1 Length = 90

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/54 (42%), Positives = 28/54 (51%)
Query: 76  SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVL 129
           S D +  LGV   AS  E+  AYRKLA   HPD    PG+ + FK +  A   L
Sbjct: 26  SKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTAL 79

>pdb|1C3G|A Chain A, S. Cerevisiae Heat Shock Protein 40 Sis1 Length = 170

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/127 (23%), Positives = 54/127 (42%), Gaps = 7/127 (5%)
Query: 294 KKNIKVKVPPGVSTGSILRVVXXXXXXXXXXXXXDLYVYLDVEEIPGIQRDGIDLFSTIS 353
           K  I +++ PG   G+ +                 L   +  +  P  +RDG DL  T+ 
Sbjct: 35  KTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHPNFKRDGDDLIYTLP 94
Query: 354 ISYLDAIMGTVVKVKTVEG----ISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLF 409
           +S+ ++++G    ++T++G    +S +Q     QP        +G P    PS RG+ + 
Sbjct: 95  LSFKESLLGFSKTIQTIDGRTLPLSRVQP---VQPSQTSTYPGQGMPTPKNPSQRGNLIV 151
Query: 410 TVKVTIP 416
             KV  P
Sbjct: 152 KYKVDYP 158

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	446
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	6e-94
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	6e-76
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	1e-45
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	4e-45
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	1e-43
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	1e-41
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	3e-41
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	3e-41
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	3e-40
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	1e-39
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	3e-39
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	3e-39
2ctt_A	104	DNAJ homolog subfamily A member 3; ZING finger, be	3e-39
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	4e-39
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	1e-38
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	1e-38
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	6e-38
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	2e-37
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	4e-37
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	3e-36
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	4e-36
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	8e-36
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	1e-33
1c3g_A	170	Heat shock protein 40; beta sheets, short helices,	3e-33
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	7e-33
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	6e-32
2q2g_A	180	HSP40 protein, heat shock 40 kDa protein, putative	9e-32
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	2e-30
1exk_A	79	DNAJ protein; extended beta-hairpin, CXXCXGXG, zin	1e-27
3agx_A	181	DNAJ homolog subfamily B member 1; chaperone; 1.85	3e-27
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-22
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	2e-20
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	2e-20
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	4e-20
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	1e-17
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	6e-15
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	8e-15
3i38_A	109	Putative chaperone DNAJ; structural genomics, prot	2e-14
3i38_A	109	Putative chaperone DNAJ; structural genomics, prot	3e-08
2guz_A	71	Mitochondrial import inner membrane translocase su	1e-12
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	6e-10
1xao_A	121	YDJ1, mitochondrial protein import protein MAS5; b	1e-09
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	9e-09

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Length = 329

 Score =  285 bits (732), Expect = 6e-94
 Identities = 89/347 (25%), Positives = 138/347 (39%), Gaps = 78/347 (22%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
           DYYA LGV  +   K IK AYR+LAR+YHPDV+KE  A  KFK+++ A+EVL D+++RA 
Sbjct: 29  DYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAE 88

Query: 138 YDQYGEAGVKSTVGGGSSAYTTNPF-----DLFETFFGPSMGGFPGMNQTGFRTRRRSTV 192
           YDQ  +       G     +  +       D+F + FG                RRR   
Sbjct: 89  YDQLWQHRNDPGFGRQRQTHEQSYSQQDFDDIFSSMFG-----------QQAHQRRRQHA 137

Query: 193 TKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVM 252
            +G DL  ++ +   E++    +    +                          G  +  
Sbjct: 138 ARGHDLEIEVAVFLEETLAEQTRTISYN-------------------LPVYNVFGMIESE 178

Query: 253 RTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILR 312
                                                     K + VK+P GV  G  +R
Sbjct: 179 TP----------------------------------------KTLNVKIPAGVVDGQRIR 198

Query: 313 VVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEG 372
           + G+G  G  GGP GDL++ + +   P     G +L   + ++  +A +G  V V T++ 
Sbjct: 199 LKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKE 258

Query: 373 ISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRI 419
              L VPPG+Q G  L +  KG       +  GD    +K+ +P + 
Sbjct: 259 SILLTVPPGSQAGQRLRIKGKGLV---SKTHTGDLFAVIKIVMPTKP 302

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1 Length = 248

 Score =  236 bits (604), Expect = 6e-76
 Identities = 62/235 (26%), Positives = 101/235 (42%), Gaps = 8/235 (3%)

Query: 187 RRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCG 246
           +R     +G+D++++I     E   G   +  L+    C+ C G G K G+  + C++C 
Sbjct: 3   QRPRGPQRGKDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGAVKK-CTSCN 61

Query: 247 GRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEY--CRKCSGEGRIRLKKNIKVKVPPG 304
           G+G    T Q    +    + C  C G G++I     C+ C+G+     +K ++V V PG
Sbjct: 62  GQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVENERKILEVHVEPG 121

Query: 305 VSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTV 364
           +  G  +   GE D  P    PGD+   +        +RDG DL     I  L AI G  
Sbjct: 122 MKDGQRIVFKGEADQAP-DVIPGDVVFIVSERPHKSFKRDGDDLVYEAEIDLLTAIAGGE 180

Query: 365 VKVKTVEG-ISELQVPPG--TQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIP 416
             ++ V G   ++ + PG    PG   V+  KG P        G+ +    +  P
Sbjct: 181 FALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGG-YGNLIIKFTIKDP 234

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus} Length = 88

 Score =  152 bits (385), Expect = 1e-45
 Identities = 39/85 (45%), Positives = 56/85 (65%)

Query: 63  SSTYRFGRSVVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEI 122
           S +    +S+     D Y  LGV ++AS  +IK AY+KLAR++HPD NK+PGA ++F +I
Sbjct: 3   SGSSGILQSLSALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQI 62

Query: 123 SAAYEVLSDDKKRAMYDQYGEAGVK 147
           S AYE+LS+++KR  YD YG     
Sbjct: 63  SKAYEILSNEEKRTNYDHYGSGPSS 87

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 77

 Score =  150 bits (381), Expect = 4e-45
 Identities = 47/76 (61%), Positives = 59/76 (77%), Gaps = 3/76 (3%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
           DYY TLG+ + AS +EIK AYR+ A +YHPD NKEPGA EKFKEI+ AY+VLSD +KR +
Sbjct: 4   DYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREI 63

Query: 138 YDQYGEAGVKSTVGGG 153
           +D+YGE G+K   G G
Sbjct: 64  FDRYGEEGLK---GSG 76

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78

 Score =  146 bits (371), Expect = 1e-43
 Identities = 39/73 (53%), Positives = 50/73 (68%)

Query: 75  ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKK 134
           +SGDYY  LGV + AS +++K AYR+LA ++HPD N  PGATE FK I  AY VLS+ +K
Sbjct: 5   SSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEK 64

Query: 135 RAMYDQYGEAGVK 147
           R  YDQ+G     
Sbjct: 65  RKQYDQFGSGPSS 77

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score =  141 bits (358), Expect = 1e-41
 Identities = 40/76 (52%), Positives = 48/76 (63%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
            YY  LGVPKSAS ++IK A+ KLA +YHPD NK P A  KF+EI+ AYE LSD  +R  
Sbjct: 8   SYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKE 67

Query: 138 YDQYGEAGVKSTVGGG 153
           YD  G +   S  G  
Sbjct: 68  YDTLGHSAFTSGKGQS 83

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens} Length = 99

 Score =  140 bits (356), Expect = 3e-41
 Identities = 43/96 (44%), Positives = 55/96 (57%), Gaps = 2/96 (2%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEP--GATEKFKEISAAYEVLSDDKKR 135
            YY  L VP+SAS  +IK AYR+ A Q+HPD N +    A +KFKE++ AYEVLSD  KR
Sbjct: 3   SYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKR 62

Query: 136 AMYDQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGP 171
            +YD+YG  G+  T  G S A   +     E     
Sbjct: 63  EIYDRYGREGLTGTGTGPSRAEAGSGGPGLEHHHHH 98

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus} Length = 109

 Score =  141 bits (357), Expect = 3e-41
 Identities = 41/110 (37%), Positives = 60/110 (54%), Gaps = 11/110 (10%)

Query: 70  RSVVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEV 128
           RS+  +    Y  LG+ K+A+  +IK +YRKLA +YHPD N + P A +KFKEI+ A+ +
Sbjct: 10  RSLSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAI 69

Query: 129 LSDDKKRAMYDQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPG 178
           L+D  KR +YD+YG  G+      G         +   T+F    G   G
Sbjct: 70  LTDATKRNIYDKYGSLGLYVAEQFG--------EENVNTYF--VSGPSSG 109

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A Length = 103

 Score =  138 bits (350), Expect = 3e-40
 Identities = 49/100 (49%), Positives = 61/100 (61%), Gaps = 2/100 (2%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDKKRA 136
           DYY  LGV K+A  +EI+ AY++LA +YHPD N+ +  A  KFKEI  AYEVL+D +KRA
Sbjct: 4   DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63

Query: 137 MYDQYGEAGVKSTVGGGSSAYTTNPF-DLFETFFGPSMGG 175
            YDQYG A  +    GG        F D+F   FG   GG
Sbjct: 64  AYDQYGHAAFEQGGMGGGGFGGGADFSDIFGDVFGDIFGG 103

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Length = 210

 Score =  140 bits (354), Expect = 1e-39
 Identities = 42/152 (27%), Positives = 64/152 (42%), Gaps = 26/152 (17%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRA 136
           ++Y+ LGV K+AS +EI+ A++KLA + HPD N   P A   F +I+ AYEVL D+  R 
Sbjct: 3   NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRK 62

Query: 137 MYDQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGE 196
            YD+YGE G++   GG         ++ +  +                  R         
Sbjct: 63  KYDKYGEKGLEDNQGGQ--------YESWSYYRYDFGIYDDDPEIITLERRE-------- 106

Query: 197 DLRYDIVLEFSESIFGAEKEFELSHLETCEVC 228
                    F  ++   E  F   +   C  C
Sbjct: 107 ---------FDAAVNSGELWFVNFYSPGCSHC 129

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae} Length = 92

 Score =  135 bits (342), Expect = 3e-39
 Identities = 37/79 (46%), Positives = 47/79 (59%), Gaps = 2/79 (2%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
             Y  LGV  SA+ +E+K  YRK A +YHPD     G TEKFKEIS A+E+L+D +KR +
Sbjct: 9   KLYDLLGVSPSANEQELKKGYRKAALKYHPDKP--TGDTEKFKEISEAFEILNDPQKREI 66

Query: 138 YDQYGEAGVKSTVGGGSSA 156
           YDQYG    +S        
Sbjct: 67  YDQYGLEAARSGGPSFGPG 85

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 92

 Score =  135 bits (342), Expect = 3e-39
 Identities = 39/81 (48%), Positives = 53/81 (65%), Gaps = 2/81 (2%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE--PGATEKFKEISAAYEVLSDDKKR 135
           +YY  LGV  SAS ++IK AYRKLA ++HPD N +    A +KFK +S AYEVLSD KKR
Sbjct: 10  NYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKR 69

Query: 136 AMYDQYGEAGVKSTVGGGSSA 156
           ++YD+ G    ++  G    +
Sbjct: 70  SLYDRAGCDSWRAGGGASGPS 90

>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 104

 Score =  135 bits (343), Expect = 3e-39
 Identities = 35/106 (33%), Positives = 51/106 (48%), Gaps = 4/106 (3%)

Query: 195 GEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRT 254
           G      + L F+++  G  KEF ++ ++TCE C G G + G+K++ C  CGG G     
Sbjct: 1   GSSGSSGMELTFNQAAKGVNKEFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSGME-TI 59

Query: 255 DQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVK 300
           +    G F   S C  CGG G +I   C  C G G+ + KK     
Sbjct: 60  NT---GPFVMRSTCRRCGGRGSIIISPCVVCRGAGQAKQKKRSGPS 102

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score =  134 bits (340), Expect = 4e-39
 Identities = 41/70 (58%), Positives = 51/70 (72%), Gaps = 1/70 (1%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDKKRA 136
           DYY  LGVP++AS KEIK AY +LA++YHPD NK +P A EKF +++ AYEVLSD+ KR 
Sbjct: 8   DYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRK 67

Query: 137 MYDQYGEAGV 146
            YD YG    
Sbjct: 68  QYDAYGSGPS 77

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 82

 Score =  133 bits (337), Expect = 1e-38
 Identities = 38/72 (52%), Positives = 48/72 (66%), Gaps = 2/72 (2%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE--PGATEKFKEISAAYEVLSDDKKR 135
           DYY  L VP+ AS + IK AYRKLA ++HPD N E    A  +FK+++ AYEVLSD KKR
Sbjct: 10  DYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKR 69

Query: 136 AMYDQYGEAGVK 147
            +YD+YG     
Sbjct: 70  DIYDRYGSGPSS 81

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 112

 Score =  134 bits (340), Expect = 1e-38
 Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 7/98 (7%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRA 136
           DYY  LG  + +S ++I A ++  A + HPD + E P A E F+++  A E+L++++ RA
Sbjct: 21  DYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRA 80

Query: 137 MYDQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMG 174
            YD +  + +        +       D  +T  GPS G
Sbjct: 81  RYDHWRRSQMSMPFQQWEAL-----NDSVKT-SGPSSG 112

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A Length = 73

 Score =  131 bits (332), Expect = 6e-38
 Identities = 39/66 (59%), Positives = 47/66 (71%), Gaps = 2/66 (3%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
            YY  LGV   AS  E+K AYRK+A ++HPD N  P   E+FK+IS AYEVLSD+KKR +
Sbjct: 9   GYYDVLGVKPDASDNELKKAYRKMALKFHPDKN--PDGAEQFKQISQAYEVLSDEKKRQI 66

Query: 138 YDQYGE 143
           YDQ GE
Sbjct: 67  YDQGGE 72

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score =  131 bits (331), Expect = 2e-37
 Identities = 31/94 (32%), Positives = 40/94 (42%), Gaps = 2/94 (2%)

Query: 62  RSSTYRFGRSVVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFK 120
             S+   G     +    Y  LGVP +A+  +IKAAY +    YHPD N     A E+F 
Sbjct: 3   SGSSGSQGDCSY-SRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFT 61

Query: 121 EISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGS 154
            IS AY VL     R  YD+   +       G  
Sbjct: 62  RISQAYVVLGSATLRRKYDRGLLSDEDLRGPGSG 95

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans} Length = 109

 Score =  130 bits (329), Expect = 4e-37
 Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 5/88 (5%)

Query: 63  SSTYRFGRSVVCASGDYYATLGVPKSA-SGKEIKAAYRKLARQYHPDVNKEP----GATE 117
           S+   F   + C   + Y  L V +     +++  AYR LAR++HPD  K       A E
Sbjct: 1   SNAVGFAPELYCGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEE 60

Query: 118 KFKEISAAYEVLSDDKKRAMYDQYGEAG 145
           +F+ I+ AYE L DD+ +  YD Y +  
Sbjct: 61  RFRVIATAYETLKDDEAKTNYDYYLDHP 88

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens} Length = 155

 Score =  129 bits (327), Expect = 3e-36
 Identities = 26/109 (23%), Positives = 43/109 (39%), Gaps = 10/109 (9%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-------EPGATEKFKEISAAYEVLS 130
           D+Y+ LG   SA+  ++K  Y+KL   YHPD               +KF EI  A+++L 
Sbjct: 11  DWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILG 70

Query: 131 DDKKRAMYDQYGEAGVKSTVGGGSSAYTTNPFDL---FETFFGPSMGGF 176
           +++ +  YD          VG   +              +F+     G 
Sbjct: 71  NEETKREYDLQRCEDDLRNVGPVDAQVYLEEMSWNEGDHSFYLSCRCGG 119

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1 Length = 94

 Score =  127 bits (320), Expect = 4e-36
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 7/75 (9%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-------EPGATEKFKEISAAYEVLS 130
           D+Y+ LG   SA+  ++K  Y+KL   YHPD               +KF EI  A+++L 
Sbjct: 17  DWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILG 76

Query: 131 DDKKRAMYDQYGEAG 145
           +++ +  YD      
Sbjct: 77  NEETKKKYDLQRSGP 91

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90

 Score =  126 bits (318), Expect = 8e-36
 Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 2/89 (2%)

Query: 53  GSKLNSSNARSSTYRFGRSV--VCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVN 110
           GS  +S ++ S T     ++  +  S D +  LGV   AS  E+  AYRKLA   HPD  
Sbjct: 1   GSSGSSGSSASFTKEQADAIRRIRNSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKC 60

Query: 111 KEPGATEKFKEISAAYEVLSDDKKRAMYD 139
             PG+ + FK +  A   L  + K     
Sbjct: 61  VAPGSEDAFKAVVNARTALLKNIKSGPSS 89

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1 Length = 114

 Score =  121 bits (304), Expect = 1e-33
 Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 5/90 (5%)

Query: 78  DYYATLGVPKSASG--KEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKR 135
                LG+ +SA G    ++ AY K  +++HPD     G  EK K+++  Y+ + D  K 
Sbjct: 9   QLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKG---GDEEKMKKMNTLYKKMEDGVKY 65

Query: 136 AMYDQYGEAGVKSTVGGGSSAYTTNPFDLF 165
           A    +G     + +    +      ++ F
Sbjct: 66  AHQPDFGGFWDATEIPTYGTDEWEQWWNAF 95

>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A Length = 170

 Score =  122 bits (308), Expect = 3e-33
 Identities = 34/137 (24%), Positives = 59/137 (43%), Gaps = 1/137 (0%)

Query: 284 KCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQR 343
              G      K  I +++ PG   G+ +    +GD  P+ G    L   +  +  P  +R
Sbjct: 25  GRKGPHGASEKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHPNFKR 84

Query: 344 DGIDLFSTISISYLDAIMGTVVKVKTVEG-ISELQVPPGTQPGDVLVLAKKGAPKLNKPS 402
           DG DL  T+ +S+ ++++G    ++T++G    L      QP        +G P    PS
Sbjct: 85  DGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRVQPVQPSQTSTYPGQGMPTPKNPS 144

Query: 403 IRGDHLFTVKVTIPNRI 419
            RG+ +   KV  P  +
Sbjct: 145 QRGNLIVKYKVDYPISL 161

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C Length = 174

 Score =  121 bits (305), Expect = 7e-33
 Identities = 22/99 (22%), Positives = 40/99 (40%), Gaps = 19/99 (19%)

Query: 78  DYYATLGVPKSASG--KEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKR 135
                LG+ +SA G    ++ AY K  +++HPD     G  EK K+++  Y+ + D  K 
Sbjct: 12  QLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKG---GDEEKMKKMNTLYKKMEDGVKY 68

Query: 136 AMYDQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMG 174
           A    +G                 +  ++F +   P + 
Sbjct: 69  AHQPDFGGFW--------------DATEVFASSLNPGVD 93

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 88

 Score =  115 bits (291), Expect = 6e-32
 Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 5/74 (6%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEP--GATEKFKEISAAYEVLSDDKKR 135
           +  + +         E K   R+L  ++HPD N E    A E FK +      L    K+
Sbjct: 17  EVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLE---KQ 73

Query: 136 AMYDQYGEAGVKST 149
           A  DQ  +   + T
Sbjct: 74  AFLDQNADRASRRT 87

>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II} Length = 180

 Score =  118 bits (298), Expect = 9e-32
 Identities = 36/151 (23%), Positives = 64/151 (42%), Gaps = 3/151 (1%)

Query: 271 CGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLY 330
             G+ + I    ++         +  ++V++ PG   G+ L   GEGD    G  PGDL 
Sbjct: 18  YLGKRKKIKVTRKRFIEHKVRNEENIVEVEIKPGWKDGTKLTYSGEGDQESPGTSPGDLV 77

Query: 331 VYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPG--TQPGDVL 388
           + +  +  P   RD   L   ++I  + A+ G    V T++    LQ+P      P    
Sbjct: 78  LIIQTKTHPRFTRDDCHLIMKVTIPLVRALTGFTCPVTTLDN-RNLQIPIKEIVNPKTRK 136

Query: 389 VLAKKGAPKLNKPSIRGDHLFTVKVTIPNRI 419
           ++  +G P  N+P  +GD +    +  P  +
Sbjct: 137 IVPNEGMPIKNQPGQKGDLILEFDICFPKSL 167

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score =  123 bits (310), Expect = 2e-30
 Identities = 44/173 (25%), Positives = 70/173 (40%), Gaps = 6/173 (3%)

Query: 69  GRSVVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYE 127
           G        ++Y+ LGV K+AS +EI+ A++KLA + HPD N   P A   F +I+ AYE
Sbjct: 13  GHIEGRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYE 72

Query: 128 VLSDDKKRAMYDQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTR 187
           VL D+  R  YD+YGE G++   GG   +++   +D       P +              
Sbjct: 73  VLKDEDLRKKYDKYGEKGLEDNQGGQYESWSYYRYDFGIYDDDPEIITLERREFDAAVNS 132

Query: 188 RRSTVTK----GEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMG 236
                      G    +D+   + E     +    +  +  C          G
Sbjct: 133 GELWFVNFYSPGSSHSHDLAPTWREFAKEVDGLLRIGAVN-CGDDRMLCRMKG 184

>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1 Length = 79

 Score =  104 bits (261), Expect = 1e-27
 Identities = 35/81 (43%), Positives = 46/81 (56%), Gaps = 4/81 (4%)

Query: 212 GAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSC 271
           G  KE  +  LE C+VC G+GAK G++ + C TC G GQV +  Q   G F+    CP C
Sbjct: 1   GVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQV-QMRQ---GFFAVQQTCPHC 56

Query: 272 GGEGEVISEYCRKCSGEGRIR 292
            G G +I + C KC G GR+ 
Sbjct: 57  QGRGTLIKDPCNKCHGHGRVE 77

>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A Length = 181

 Score =  106 bits (267), Expect = 3e-27
 Identities = 39/155 (25%), Positives = 62/155 (40%), Gaps = 5/155 (3%)

Query: 267 VCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPP 326
           +   C  + + IS       G+      K + ++V  G   G+ +    EGD       P
Sbjct: 16  IYSGCTKKMK-ISHKRLNPDGKSIRNEDKILTIEVKKGWKEGTKITFPKEGDQTS-NNIP 73

Query: 327 GDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPG--TQP 384
            D+   L  +     +RDG D+     IS  +A+ G  V V T++G   + V      +P
Sbjct: 74  ADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDG-RTIPVVFKDVIRP 132

Query: 385 GDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRI 419
           G    +  +G P    P  RGD +   +V  P RI
Sbjct: 133 GMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERI 167

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 99.0 bits (247), Expect = 1e-22
 Identities = 32/67 (47%), Positives = 42/67 (62%), Gaps = 4/67 (5%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPG----ATEKFKEISAAYEVLSDDK 133
           DYY  LGV ++A  +EI  AYRKLA Q+HPD  +       A +KF +I+AA EVLSD +
Sbjct: 383 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPE 442

Query: 134 KRAMYDQ 140
            R  +D 
Sbjct: 443 MRKKFDD 449

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A Length = 181

 Score = 87.7 bits (217), Expect = 2e-20
 Identities = 20/99 (20%), Positives = 36/99 (36%), Gaps = 10/99 (10%)

Query: 78  DYYATLGVPKSASG-------KEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLS 130
            +Y                    ++  YR+L  Q+HPD+      +E+   ++ AY  L 
Sbjct: 12  TFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMA--QQGSEQSSTLNQAYHTLK 69

Query: 131 DDKKRAMYDQYGEAGVKSTVGGGSSAYTTNPFD-LFETF 168
           D  +R+ Y       +  T    S+  TT+    L +  
Sbjct: 70  DPLRRSQYMLKLLRNIDLTQEQTSNEVTTSDPQLLLKVL 108

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1 Length = 171

 Score = 86.9 bits (215), Expect = 2e-20
 Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 8/70 (11%)

Query: 78  DYYATLGVPKSAS--GKEIKAAYRKLARQYHPDVNKEPGATEK------FKEISAAYEVL 129
           DY+   G+P       + +   ++ L RQYHPD        E+         I+ A++ L
Sbjct: 2   DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTL 61

Query: 130 SDDKKRAMYD 139
                RA Y 
Sbjct: 62  RHPLMRAEYL 71

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1 Length = 79

 Score = 76.5 bits (188), Expect = 1e-17
 Identities = 11/67 (16%), Positives = 26/67 (38%), Gaps = 5/67 (7%)

Query: 78  DYYATLGVPKSASG--KEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKR 135
                L +P+   G    ++ AY++ +   HPD     G+    +E+++ +     +   
Sbjct: 12  RLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKG---GSHALMQELNSLWGTFKTEVYN 68

Query: 136 AMYDQYG 142
              +  G
Sbjct: 69  LRMNLGG 75

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens} Length = 207

 Score = 72.5 bits (177), Expect = 6e-15
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 8/70 (11%)

Query: 78  DYYATLGVPKS--ASGKEIKAAYRKLARQYHPDVNKEPGATEK------FKEISAAYEVL 129
           DY++ +   +S      +++  Y++L R  HPD   +   TEK         ++ AY+ L
Sbjct: 44  DYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTL 103

Query: 130 SDDKKRAMYD 139
                R +Y 
Sbjct: 104 LAPLSRGLYL 113

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J Length = 182

 Score = 71.4 bits (174), Expect = 8e-15
 Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 4/65 (6%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK----EPGATEKFKEISAAYEVLSDDK 133
             +  +G+    + +++K  YRK     HPD       E  A   F E++ A+    +  
Sbjct: 118 TKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQG 177

Query: 134 KRAMY 138
           ++ +Y
Sbjct: 178 QKPLY 182

>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp} Length = 109

 Score = 68.4 bits (168), Expect = 2e-14
 Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 3/78 (3%)

Query: 342 QRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLAKKGAPKLNKP 401
              G +L   + ++  +A +G  V V T++    L VPPG+Q G  L +  KG       
Sbjct: 8   DIVGHNLEIVLPLAPWEAALGAKVTVPTLKESILLTVPPGSQAGQRLRIKGKGLV---SK 64

Query: 402 SIRGDHLFTVKVTIPNRI 419
           +  GD    +K+ +P + 
Sbjct: 65  THTGDLFAVIKIVMPTKP 82

>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp} Length = 109

 Score = 50.6 bits (122), Expect = 3e-08
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 2/40 (5%)

Query: 297 IKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVE 336
           I + VPPG   G  LR+ G+G         GDL+  + + 
Sbjct: 40  ILLTVPPGSQAGQRLRIKGKG--LVSKTHTGDLFAVIKIV 77

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Length = 71

 Score = 61.6 bits (150), Expect = 1e-12
 Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 4/59 (6%)

Query: 78  DYYATLGVPKSA-SGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKR 135
           +    L + ++  + K++K  +RK+    HPD     G+     +I+ A + L      
Sbjct: 15  EALQILNLTENTLTKKKLKEVHRKIMLANHPDKG---GSPFLATKINEAKDFLEKRGIS 70

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana} Length = 106

 Score = 55.4 bits (133), Expect = 6e-10
 Identities = 15/71 (21%), Positives = 33/71 (46%), Gaps = 6/71 (8%)

Query: 76  SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEIS-AAYEVLSDDKK 134
           SG  +  + +     G  ++ +Y++     HPD  ++ GA+   K ++   +E+L +   
Sbjct: 39  SGSGWKPVPLMDMIEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQE--- 95

Query: 135 RAMYDQYGEAG 145
            A +D +   G
Sbjct: 96  -A-WDHFNTLG 104

>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae} Length = 121

 Score = 55.0 bits (133), Expect = 1e-09
 Identities = 22/80 (27%), Positives = 32/80 (40%), Gaps = 4/80 (5%)

Query: 342 QRDGIDLFSTISISYLDAIMGTVVKVKTVEG-ISELQVPPG--TQPGDVLVLAKKGAPKL 398
           +RDG DL     I  L AI G    ++ V G   ++ + PG    PG   V+  KG P  
Sbjct: 3   KRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIP 62

Query: 399 NKPSIRGDHLFTVKVTIPNR 418
                 G+ +    +  P  
Sbjct: 63  KYGG-YGNLIIKFTIKFPEN 81

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A Length = 92

 Score = 51.5 bits (123), Expect = 9e-09
 Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 4/56 (7%)

Query: 80  YATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPG----ATEKFKEISAAYEVLSD 131
           +  +G+    + +++K  YRK     HP           A   F E++ A+    +
Sbjct: 36  WKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	446
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	100.0
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	100.0
3agx_A	181	DNAJ homolog subfamily B member 1; chaperone; 1.85	100.0
2q2g_A	180	HSP40 protein, heat shock 40 kDa protein, putative	100.0
1c3g_A	170	Heat shock protein 40; beta sheets, short helices,	100.0
3i38_A	109	Putative chaperone DNAJ; structural genomics, prot	99.93
1xao_A	121	YDJ1, mitochondrial protein import protein MAS5; b	99.9
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	99.88
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	99.85
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	99.83
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	99.83
2ctt_A	104	DNAJ homolog subfamily A member 3; ZING finger, be	99.83
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	99.82
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	99.82
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	99.81
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	99.81
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	99.81
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	99.81
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	99.8
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	99.79
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	99.79
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	99.78
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	99.77
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	99.74
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.74
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	99.73
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	99.69
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	99.69
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	99.68
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	99.66
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	99.64
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	99.63
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	99.61
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	99.6
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	99.59
2guz_A	71	Mitochondrial import inner membrane translocase su	99.58
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.57
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	99.57
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	99.54
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	99.52
1exk_A	79	DNAJ protein; extended beta-hairpin, CXXCXGXG, zin	99.49
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	99.47
3i38_A	109	Putative chaperone DNAJ; structural genomics, prot	99.05
1xao_A	121	YDJ1, mitochondrial protein import protein MAS5; b	99.01
2guz_B	65	Mitochondrial import inner membrane translocase su	98.86
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	98.84
1c3g_A	170	Heat shock protein 40; beta sheets, short helices,	98.71
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	98.71
2q2g_A	180	HSP40 protein, heat shock 40 kDa protein, putative	98.69
3agx_A	181	DNAJ homolog subfamily B member 1; chaperone; 1.85	98.63
2ctt_A	104	DNAJ homolog subfamily A member 3; ZING finger, be	97.78
1exk_A	79	DNAJ protein; extended beta-hairpin, CXXCXGXG, zin	97.72
3pmq_A	669	Decaheme cytochrome C MTRF; greek KEY, C type cyto	97.72
3lcz_A	53	YCZA, inhibitor of trap, regulated by T-box (Trp)	97.34
2bx9_A	53	Anti-trap, AT, tryptophan RNA-binding attenuator p	97.18
3lcz_A	53	YCZA, inhibitor of trap, regulated by T-box (Trp)	97.11
2bx9_A	53	Anti-trap, AT, tryptophan RNA-binding attenuator p	96.6
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	84.75

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A

Probab=100.00  E-value=2.4e-65  Score=509.16  Aligned_cols=286  Identities=31%  Similarity=0.516  Sum_probs=158.6

Q ss_pred             ccCcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhhhhccccceeeccCCC
Q 013277           74 CASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGG  153 (446)
Q Consensus        74 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~~~~~~~  153 (446)
                      +..+|||++|||+++|+.+|||+|||+||++||||+++++.+.++|++|++||++|+||.+|+.||+|+..+...+.+++
T Consensus        25 m~~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~~~~~~~~  104 (329)
T 3lz8_A           25 MELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEYDQLWQHRNDPGFGRQ  104 (329)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHHHHhhhhhhhcccchhhccccCCCcccc
Confidence            44579999999999999999999999999999999998888999999999999999999999999999543211111100


Q ss_pred             ----CCCC-cCCCcCccccccCCCCCCCCCCCCCCcccccccccccCCceeEeeeeecccccccceeeeeccceeecccc
Q 013277          154 ----SSAY-TTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVC  228 (446)
Q Consensus       154 ----~~~~-~~~~~d~F~~fFg~~~g~~~~~~~~~~~~~~~~~~~~g~di~~~l~ltlee~~~G~~k~~~~~~~~~C~~C  228 (446)
                          .++| ..++.|+|++||+++  +.+        . +++...++.|+.++|.|+|+|+|+|+++++.+++.+.|   
T Consensus       105 ~~~~~~~f~~~~f~diF~~~Fg~~--g~~--------~-~~~~~~~g~Dl~~~l~vsleea~~G~~k~i~i~~~v~~---  170 (329)
T 3lz8_A          105 RQTHEQSYSQQDFDDIFSSMFGQQ--AHQ--------R-RRQHAARGHDLEIEVAVFLEETLAEQTRTISYNLPVYN---  170 (329)
T ss_dssp             -------------------------------------------CCCCCCEEEEECCCTTGGGSCEEEEEEEEEEECC---
T ss_pred             cccccCCcCCCchhhhhHhhhcCc--CCC--------C-CCCCcCCCCCEEEEEecchhhhhhccceEEEEEEEeec---
Confidence                1112 124567788877631  100        0 11124578999999999999999999999998764421   


Q ss_pred             cCCccccCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeecCCceEEEEeeEEEEEeCCCCCCC
Q 013277          229 TGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTG  308 (446)
Q Consensus       229 ~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G  308 (446)
                                        |.|++.                                      +...++++|+||||+++|
T Consensus       171 ------------------g~G~v~--------------------------------------~~~~~~l~V~IP~Gv~~G  194 (329)
T 3lz8_A          171 ------------------VFGMIE--------------------------------------SETPKTLNVKIPAGVVDG  194 (329)
T ss_dssp             ------------------SCC-CC--------------------------------------EEEEEEEEEEECTTCCTT
T ss_pred             ------------------CCeEEE--------------------------------------EecceEEEEeCCCCCCCC
Confidence                              122211                                      122468999999999999


Q ss_pred             CEEEEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEEEEeecHHHHhCCCEEEEeccCCeEEEEeCCCCCCCcEE
Q 013277          309 SILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVL  388 (446)
Q Consensus       309 ~~i~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~~ldG~~~l~i~~~~~~g~~~  388 (446)
                      ++|+|+|+|+++++++.+|||||+|+|++|+.|+|+|+||+++++|+|+||++|++++|+||||++.|+||++++||+++
T Consensus       195 ~~Irl~G~G~~g~~gg~~GDL~v~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~v~VptLdG~v~l~ip~gt~~g~~~  274 (329)
T 3lz8_A          195 QRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKESILLTVPPGSQAGQRL  274 (329)
T ss_dssp             CEEEESSCSCCC---CCCCCEEEEECCCCCSSCEEETTEEEEEEEECHHHHHHCEEEEECCSSSCEEEEECTTCCTTCEE
T ss_pred             CEEEEcccccCCCCCCCCCcEEEEEEEecCCccEEcCCcEEEEEECCHHHHcCCCeEEEECCCCCEEEEECCCCCCCCEE
Confidence            99999999999887888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEccCCCCCCCCCCCCCCEEEEEEEEcCCCCCcchHHHHHHHhh
Q 013277          389 VLAKKGAPKLNKPSIRGDHLFTVKVTIPNRIRYVYSPSLTIIQL  432 (446)
Q Consensus       389 ~l~g~G~P~~~~~~~~GdL~v~~~v~~P~~ls~~~~~~l~~l~~  432 (446)
                      +|+|+|||..   ..+|||||+|+|.||++||++|+++|++|..
T Consensus       275 rl~G~GmP~~---~~rGDL~v~~~V~~P~~l~~~q~~~l~~~~~  315 (329)
T 3lz8_A          275 RIKGKGLVSK---THTGDLFAVIKIVMPTKPDEKARELWQQLAA  315 (329)
T ss_dssp             EETTCSCBCS---SCBCCEEEEEEECCCSSCCHHHHHHHHHHHH
T ss_pred             EEcCCCCCCC---CCCCCEEEEEEEECCCCCCHHHHHHHHHHHh
Confidence            9999999975   3589999999999999999999999999876

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1

Probab=100.00  E-value=4e-58  Score=441.30  Aligned_cols=233  Identities=27%  Similarity=0.489  Sum_probs=208.4

Q ss_pred             cccCCceeEeeeeecccccccceeeeeccceeecccccCCccccCcceeeCCCCCCccEEEEeeeCCceee-eeeecCCC
Q 013277          192 VTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLF-SQVSVCPS  270 (446)
Q Consensus       192 ~~~g~di~~~l~ltlee~~~G~~k~~~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~-~~~~~C~~  270 (446)
                      ..++.|++++|.|||||+|+|+++++.+++.+.|+.|+|+|++.+. ..+|+.|+|+|+++...++++ ++ +...+|+.
T Consensus         8 ~~~g~d~~~~l~vslee~~~G~~k~i~~~r~~~C~~C~G~G~~~g~-~~~C~~C~G~G~~~~~~~~g~-~~~~~~~~C~~   85 (248)
T 1nlt_A            8 PQRGKDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGA-VKKCTSCNGQGIKFVTRQMGP-MIQRFQTECDV   85 (248)
T ss_dssp             CCBCCCEEEEEEECTTHHHHCEEEEEEEEEEEECTTTTTCSBSTTT-CCCCTTSSSSSCEEEEEESSS-EEEEEECSCTT
T ss_pred             CCCCCCEEEEEEecHHHhcCCceEEEEeeEEEeCCCCcCccCCCCC-CccCCCCCCCcEEEEEEecCc-eEEEEEEcCCC
Confidence            3578999999999999999999999999999999999999999887 589999999999988777777 54 44589999


Q ss_pred             CCCcceEe--ceeeeecCCceEEEEeeEEEEEeCCCCCCCCEEEEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcce
Q 013277          271 CGGEGEVI--SEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDL  348 (446)
Q Consensus       271 C~G~G~~~--~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL  348 (446)
                      |+|+|+++  +++|..|+|.|.+.+.++++|+||+|+++|++|+|+|+|++++ ++.+|||||+|++++|+.|+|+|+||
T Consensus        86 C~G~G~~i~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~~~-~g~~GDl~v~i~v~~h~~F~R~G~DL  164 (248)
T 1nlt_A           86 CHGTGDIIDPKDRCKSCNGKKVENERKILEVHVEPGMKDGQRIVFKGEADQAP-DVIPGDVVFIVSERPHKSFKRDGDDL  164 (248)
T ss_dssp             CSSSSSCCCTTSBCSSSTTSCEEEEEEEEEEEECTTCCTTCEEEETTCSCCCT-TCBCCCEEEEEEECCCSSCEEETTEE
T ss_pred             CCCcCEEeccCCCCcccCCCceEeeeEEEEEEECCCccCCCEEEEeeeecCCC-CCCcceEEEEEEEecCccceeeCCEE
Confidence            99999999  8999999999999999999999999999999999999999976 56899999999999999999999999


Q ss_pred             EEEEeecHHHHhCCCEEEEeccCCe-EEEEeCCC--CCCCcEEEEccCCCCCCCCCCCCCCEEEEEEEEcCCC--CCcch
Q 013277          349 FSTISISYLDAIMGTVVKVKTVEGI-SELQVPPG--TQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNR--IRYVY  423 (446)
Q Consensus       349 ~~~~~Isl~eAl~G~~~~i~~ldG~-~~l~i~~~--~~~g~~~~l~g~G~P~~~~~~~~GdL~v~~~v~~P~~--ls~~~  423 (446)
                      |++++|||+|||+|++++|+||||+ +.|+||++  ++||++++|+|+|||..+++ .+|||||+|+|+||++  ||++|
T Consensus       165 ~~~~~Isl~eAllG~~i~v~tldG~~~~i~ip~g~vt~~g~~~rl~g~Gmp~~~~~-~~GDL~V~~~V~~P~~~~Ls~~q  243 (248)
T 1nlt_A          165 VYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYG-GYGNLIIKFTIKDPENHFTSEEN  243 (248)
T ss_dssp             EEEEEEEHHHHHHCBCCEEECSSSCEEECCBCTTTTCSTTCEEEETTCSCBCSSSC-SBCCEEEEEEEECCC--------
T ss_pred             EEEEEeCHHHHhcCCEEEEeCCCCCEEEEEeCCCCeeCCCeEEEEcCCCCccCCCC-CcCCEEEEEEEECCCCCCCCHHH
Confidence            9999999999999999999999996 78999998  99999999999999987654 6899999999999999  99999


Q ss_pred             HHHHH
Q 013277          424 SPSLT  428 (446)
Q Consensus       424 ~~~l~  428 (446)
                      +++|+
T Consensus       244 ~~~l~  248 (248)
T 1nlt_A          244 LKKLE  248 (248)
T ss_dssp             -----
T ss_pred             HHhhC
Confidence            99985

>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A

Probab=100.00  E-value=9.1e-45  Score=332.50  Aligned_cols=178  Identities=24%  Similarity=0.327  Sum_probs=157.4

Q ss_pred             CCceeEeeeeecccccccceeeeeccceeecccccCCccccCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCc
Q 013277          195 GEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGE  274 (446)
Q Consensus       195 g~di~~~l~ltlee~~~G~~k~~~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~  274 (446)
                      ++|++++|.|||||+|+|+++++.+++                                                     
T Consensus         2 ~~d~~~~l~islee~~~G~~k~i~i~~-----------------------------------------------------   28 (181)
T 3agx_A            2 DPPVTHDLRVSLEEIYSGCTKKMKISH-----------------------------------------------------   28 (181)
T ss_dssp             ----CEEEEECHHHHHHCEEEEEEEEE-----------------------------------------------------
T ss_pred             CCCEEEEEEEEHHHhcCCcEEEEEEec-----------------------------------------------------
Confidence            358999999999999999999987542                                                     


Q ss_pred             ceEeceeeeecCCceEEEEeeEEEEEeCCCCCCCCEEEEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEEEEee
Q 013277          275 GEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISI  354 (446)
Q Consensus       275 G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~~~I  354 (446)
                            +|..|+|.|.+.+.++++|+||+|+++|++|+|+|+|++++ ++.+|||||+|++++|+.|+|+|+||+++++|
T Consensus        29 ------~c~~c~G~g~~~~~~~l~V~Ip~G~~~G~~ir~~G~G~~~~-~g~~GDl~v~i~~~~h~~F~R~G~DL~~~~~I  101 (181)
T 3agx_A           29 ------KRLNPDGKSIRNEDKILTIEVKKGWKEGTKITFPKEGDQTS-NNIPADIVFVLKDKPHNIFKRDGSDVIYPARI  101 (181)
T ss_dssp             ------EEECTTSSCEEEEEEEEEEEECTTCCTTCEEEETTCSCCCS-SSCCCCEEEEEEECCCSSCEEETTEEEEEEEE
T ss_pred             ------ccCCCCCceEEEEeEEEEEEECCCccCCcEEEEeeccccCC-CCCcccEEEEEEEeccccceeeCCcEEEEEEc
Confidence                  23334444445567899999999999999999999999987 57899999999999999999999999999999


Q ss_pred             cHHHHhCCCEEEEeccCCe-EEEEeCCCCCCCcEEEEccCCCCCCCCCCCCCCEEEEEEEEcCCCCCcchHHHHHHHhh
Q 013277          355 SYLDAIMGTVVKVKTVEGI-SELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRIRYVYSPSLTIIQL  432 (446)
Q Consensus       355 sl~eAl~G~~~~i~~ldG~-~~l~i~~~~~~g~~~~l~g~G~P~~~~~~~~GdL~v~~~v~~P~~ls~~~~~~l~~l~~  432 (446)
                      ||+||++|++++|+|+||+ +.|++|+++++|++++|+|+|||..++++.+|||||+|+|.||++||++|+++|++++.
T Consensus       102 sl~eAllG~~i~v~tldG~~~~i~i~~~t~~g~~~rl~g~Gmp~~~~~~~~GDL~V~~~V~~P~~ls~~q~~~l~~~~~  180 (181)
T 3agx_A          102 SLREALCGCTVNVPTLDGRTIPVVFKDVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLEQVLP  180 (181)
T ss_dssp             EHHHHHHCEEEEEECTTSCEEEEEECSCCCTTCEEEETTCSCBCSSSTTSBCCEEEEEEEECCSCCCHHHHHHHHHHSC
T ss_pred             CHHHHhCCCEEEeECCCCCEEEEECCCccCCCcEEEECCcCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHHHHHHhcc
Confidence            9999999999999999995 78999999999999999999999876556789999999999999999999999999863

>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=1.8e-43  Score=323.68  Aligned_cols=176  Identities=20%  Similarity=0.367  Sum_probs=162.0

Q ss_pred             CCceeEeeeeecccccccceeeeeccceeecccccCCccccCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCc
Q 013277          195 GEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGE  274 (446)
Q Consensus       195 g~di~~~l~ltlee~~~G~~k~~~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~  274 (446)
                      +.|++++|.|||||+|+|+++++.+++.+.|..                                               
T Consensus         3 g~d~~~~l~islee~~~G~~k~i~~~~~~~c~~-----------------------------------------------   35 (180)
T 2q2g_A            3 PRSHEVPLLVTLEELYLGKRKKIKVTRKRFIEH-----------------------------------------------   35 (180)
T ss_dssp             -CEEEEEEEECHHHHHHCEEEEEEEEEEEEETT-----------------------------------------------
T ss_pred             CCCEEEEEEeeHHHhcCCcEEEEEEeEEEecCC-----------------------------------------------
Confidence            679999999999999999999999988777631                                               


Q ss_pred             ceEeceeeeecCCceEEEEeeEEEEEeCCCCCCCCEEEEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEEEEee
Q 013277          275 GEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISI  354 (446)
Q Consensus       275 G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~~~I  354 (446)
                                    |.+.+.++++|+||+|+++|++|+|+|+|+++..++.+|||||+|++++|+.|+|+|+||+++++|
T Consensus        36 --------------g~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~g~~gg~~GDl~v~i~~~~h~~F~R~G~DL~~~~~I  101 (180)
T 2q2g_A           36 --------------KVRNEENIVEVEIKPGWKDGTKLTYSGEGDQESPGTSPGDLVLIIQTKTHPRFTRDDCHLIMKVTI  101 (180)
T ss_dssp             --------------EEEEEEEEEEEEECTTCCTTCEEEETTCSCCSSTTSCCCEEEEEEEECCCSSCEEETTEEEEEEEE
T ss_pred             --------------ceEEeeEEEEEEECCCCcCCcEEEEeeccCCCCCCCccccEEEEEEEEecccEEEcCCEEEEEEEc
Confidence                          233456899999999999999999999999966688999999999999999999999999999999


Q ss_pred             cHHHHhCCCEEEEeccCCe-EEEEeCCCCCCCcEEEEccCCCCCCCCCCCCCCEEEEEEEEcCCCCCcchHHHHHHHh
Q 013277          355 SYLDAIMGTVVKVKTVEGI-SELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRIRYVYSPSLTIIQ  431 (446)
Q Consensus       355 sl~eAl~G~~~~i~~ldG~-~~l~i~~~~~~g~~~~l~g~G~P~~~~~~~~GdL~v~~~v~~P~~ls~~~~~~l~~l~  431 (446)
                      ||+||++|++++|+|+||+ +.|.+|++++||++++|+|+|||..++++.+|||||+|+|.||++||++|+++|++++
T Consensus       102 sl~eAllG~~i~v~tldG~~v~i~ip~~t~~g~~~rl~g~Gmp~~~~~~~~GDL~V~~~V~~P~~Ls~~q~~~l~~~~  179 (180)
T 2q2g_A          102 PLVRALTGFTCPVTTLDNRNLQIPIKEIVNPKTRKIVPNEGMPIKNQPGQKGDLILEFDICFPKSLTPEQKKLIKEAL  179 (180)
T ss_dssp             EHHHHHHCEEEEEECTTCCEEEEEECSCCCTTCEEEETTCSCBCSSSTTCBCCEEEEEEEECCSCCCHHHHHHHHHHC
T ss_pred             CHHHHhCCCEEEeeCCCCCEEEEECCCccCCCEEEEECCcCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHHHHHHhc
Confidence            9999999999999999996 7899999999999999999999987665678999999999999999999999999885

>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A

Probab=100.00  E-value=1.8e-41  Score=307.73  Aligned_cols=169  Identities=22%  Similarity=0.429  Sum_probs=153.7

Q ss_pred             CceeEeeeeecccccccceeeeeccceeecccccCCccccCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcc
Q 013277          196 EDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEG  275 (446)
Q Consensus       196 ~di~~~l~ltlee~~~G~~k~~~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G  275 (446)
                      +|++++|.|||+|+|+|+++++.+.+..    +                   .                           
T Consensus         1 ~d~~~~l~islee~~~G~~k~i~~~~~~----~-------------------~---------------------------   30 (170)
T 1c3g_A            1 ETVQVNLPVSLEDLFVGKKKSFKIGRKG----P-------------------H---------------------------   30 (170)
T ss_dssp             CEEEEEEEECHHHHHHTCEEEEEEEEEE----T-------------------T---------------------------
T ss_pred             CCEEEEEEeEHHHhhCCcEEEEEEEEec----C-------------------C---------------------------
Confidence            3789999999999999999999987540    0                   0                           


Q ss_pred             eEeceeeeecCCceEEEEeeEEEEEeCCCCCCCCEEEEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceEEEEeec
Q 013277          276 EVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISIS  355 (446)
Q Consensus       276 ~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~~~~~Is  355 (446)
                                   |.+ +.++++|+||+|+++|++|+|+|+|+++.+++.+|||||+|++++|+.|+|+|+||+++++|+
T Consensus        31 -------------G~~-~~~~l~V~Ip~G~~~G~~ir~~g~G~~~~~gg~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Is   96 (170)
T 1c3g_A           31 -------------GAS-EKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHPNFKRDGDDLIYTLPLS   96 (170)
T ss_dssp             -------------TEE-EEEEEEEECCTTCCTTCEEEESSCSSBCSSSSCBCEEEEEEEECCCSSEEEETTEEEEEECCB
T ss_pred             -------------CcE-EeEEEEEEeCCCccCCCEEEEeccccCCCCCCccccEEEEEEEccCCccEEeCCcEeEEEEcC
Confidence                         112 367899999999999999999999998777889999999999999999999999999999999


Q ss_pred             HHHHhCCCEEEEeccCCe-EEEEeCCCCCCCcEEEEccCCCCCCCCCCCCCCEEEEEEEEcCCCCCcchHHHHH
Q 013277          356 YLDAIMGTVVKVKTVEGI-SELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRIRYVYSPSLT  428 (446)
Q Consensus       356 l~eAl~G~~~~i~~ldG~-~~l~i~~~~~~g~~~~l~g~G~P~~~~~~~~GdL~v~~~v~~P~~ls~~~~~~l~  428 (446)
                      ++||++|++++|+|+||+ +.|++|+++++|++++|+|+|||..++++.+|||||+|+|.||++||++|+++|+
T Consensus        97 l~eAllG~~~~v~tldG~~~~i~i~~~t~~g~~~rl~g~G~p~~~~~~~~GDL~V~~~V~~P~~Ls~~q~~~l~  170 (170)
T 1c3g_A           97 FKESLLGFSKTIQTIDGRTLPLSRVQPVQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKVDYPISLNDAQKRAID  170 (170)
T ss_dssp             HHHHHHCEEEEEECSSSCEEEEEESSCCCTTCEEECTTCSCBCSSCTTSBCCEEEEECCBCCSSCCTTHHHHTC
T ss_pred             HHHHhCCCeEEeeCCCCCEEEEECCCccCCCcEEEEeCCCCCcCCCCCCCCCEEEEEEEECCCCCCHHHHHhhC
Confidence            999999999999999996 7899999999999999999999987665678999999999999999999999874

>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}

Probab=99.93  E-value=6.4e-26  Score=190.19  Aligned_cols=95  Identities=23%  Similarity=0.306  Sum_probs=88.8

Q ss_pred             EeccCcccCCcceEEEEeecHHHHhCCCEEEEeccCCeEEEEeCCCCCCCcEEEEccCCCCCCCCCCCCCCEEEEEEEEc
Q 013277          336 EEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTI  415 (446)
Q Consensus       336 ~~~~~f~R~g~dL~~~~~Isl~eAl~G~~~~i~~ldG~~~l~i~~~~~~g~~~~l~g~G~P~~~~~~~~GdL~v~~~v~~  415 (446)
                      ++|+.|+|+|+||+++++|+|.||++|++++|+|+||.+.|+||+++++|++++|+|+|||.. +  .+|||||+|+|.|
T Consensus         2 kph~~F~R~G~DL~~~~~Isl~eAl~G~~i~v~tldG~~~v~ip~g~~~G~~~rl~G~G~p~~-~--~~GDL~v~~~V~~   78 (109)
T 3i38_A            2 NAHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKESILLTVPPGSQAGQRLRIKGKGLVSK-T--HTGDLFAVIKIVM   78 (109)
T ss_dssp             --CCCCEEETTEEEEEEEECHHHHHHCEEEEECCSSSCEEEEECTTCCTTCEEEETTCSCBCS-S--CBCCEEEEEEECC
T ss_pred             CCCCCeEEECCEEEEEEEcCHHHHhCCCEEEEEcCCCCEEEeeCCCcCcCeEEEECCccCCCC-C--CCcCEEEEEEEEC
Confidence            689999999999999999999999999999999999999999999999999999999999983 2  6899999999999


Q ss_pred             CCCCCcchHHHHHHHhhc
Q 013277          416 PNRIRYVYSPSLTIIQLN  433 (446)
Q Consensus       416 P~~ls~~~~~~l~~l~~~  433 (446)
                      |++||++|+++|+++...
T Consensus        79 P~~Ls~~q~~~l~~l~~~   96 (109)
T 3i38_A           79 PTKPDEKARELWQQLAAA   96 (109)
T ss_dssp             CSSCCHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHhh
Confidence            999999999999998753

>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae}

Probab=99.90  E-value=4.4e-24  Score=182.50  Aligned_cols=93  Identities=26%  Similarity=0.334  Sum_probs=83.7

Q ss_pred             CcccCCcceEEEEeecHHHHhCCCEEEEeccCCe-EEEEeCCC--CCCCcEEEEccCCCCCCCCCCCCCCEEEEEEEEcC
Q 013277          340 GIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGI-SELQVPPG--TQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIP  416 (446)
Q Consensus       340 ~f~R~g~dL~~~~~Isl~eAl~G~~~~i~~ldG~-~~l~i~~~--~~~g~~~~l~g~G~P~~~~~~~~GdL~v~~~v~~P  416 (446)
                      .|+|+|+||+++++|+|.||++|++++|+|+||+ +.|+||++  +++|++++|+|+|||..+++ .+|||||+|+|.||
T Consensus         1 ~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~~v~ip~g~v~~~G~~~rl~G~Gmp~~~~~-~~GDL~V~~~V~~P   79 (121)
T 1xao_A            1 SFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYG-GYGNLIIKFTIKFP   79 (121)
T ss_dssp             CCEEETTEEEEEEEEEHHHHHHCEEEEEECTTSCEEEEEECTTSCCCTTCEEEETTCSCC-------CCCEEEEEEEECC
T ss_pred             CceEECCeEEEEEEcCHHHHhCCCEEEEecCCCCEEEEEeCCCCeeCCCcEEEECCCCCCCCCCC-CCCCEEEEEEEECC
Confidence            4899999999999999999999999999999997 79999999  99999999999999987654 68999999999999


Q ss_pred             CC--CCcchHHHHHHHhhc
Q 013277          417 NR--IRYVYSPSLTIIQLN  433 (446)
Q Consensus       417 ~~--ls~~~~~~l~~l~~~  433 (446)
                      ++  |+++|+++|++++..
T Consensus        80 ~~~~ls~~q~~~l~~l~~~   98 (121)
T 1xao_A           80 ENHFTSEENLKKLEEILPP   98 (121)
T ss_dssp             CTTCSCHHHHHHHHHHSCC
T ss_pred             CCCCCCHHHHHHHHHHccc
Confidence            99  999999999999853

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A

Probab=99.88  E-value=1.9e-23  Score=173.71  Aligned_cols=97  Identities=48%  Similarity=0.796  Sum_probs=70.0

Q ss_pred             cCcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhcchhhhhhhhhhccccceeeccCCC
Q 013277           75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGG  153 (446)
Q Consensus        75 ~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~~~~~~~  153 (446)
                      |..|||+||||+++|+.+|||+|||+|++++|||+++. +.+.++|++|++||++|+||.+|+.||++|++++..+..++
T Consensus         1 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~~~~~~~   80 (103)
T 1bq0_A            1 AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQGGMGG   80 (103)
T ss_dssp             CCCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTTSSCSCC---
T ss_pred             CCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhhhhhcccCcCC
Confidence            35799999999999999999999999999999999984 77889999999999999999999999999998877532111


Q ss_pred             CCCCc--CCCcCccccccCCC
Q 013277          154 SSAYT--TNPFDLFETFFGPS  172 (446)
Q Consensus       154 ~~~~~--~~~~d~F~~fFg~~  172 (446)
                       +++.  .++.++|+++|+..
T Consensus        81 -~~~~~~~~~~~~f~~~f~~~  100 (103)
T 1bq0_A           81 -GGFGGGADFSDIFGDVFGDI  100 (103)
T ss_dssp             ---------------------
T ss_pred             -CCCCCCCCHHHHHHHHHHhh
Confidence             1111  24456777777643

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.85  E-value=6.8e-22  Score=155.53  Aligned_cols=73  Identities=62%  Similarity=1.042  Sum_probs=69.4

Q ss_pred             cCcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhhhhcccccee
Q 013277           75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVK  147 (446)
Q Consensus        75 ~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~  147 (446)
                      |..|||+||||+++|+.+|||+|||+|++++|||+++++.+.+.|++|++||++|+||.+|+.||++|.+++.
T Consensus         1 m~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~   73 (77)
T 1hdj_A            1 MGKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGLK   73 (77)
T ss_dssp             CCCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGCC
T ss_pred             CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHHcccccc
Confidence            4579999999999999999999999999999999998888999999999999999999999999999988765

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}

Probab=99.83  E-value=5.5e-21  Score=154.23  Aligned_cols=75  Identities=51%  Similarity=0.862  Sum_probs=69.7

Q ss_pred             eecccCcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhhhhccccc
Q 013277           71 SVVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAG  145 (446)
Q Consensus        71 ~~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~  145 (446)
                      .......|||+||||+++|+.+|||+|||+|+++||||+++++.+.+.|++|++||++|+||.+|+.||++|+.+
T Consensus        11 ~~~~~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~   85 (88)
T 2cug_A           11 SLSALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYDHYGSGP   85 (88)
T ss_dssp             CCCSSSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCSTTHHHHHHHHHHHHHHHHSHHHHHHHHHHTTCC
T ss_pred             hhccCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHHCCHHHHHHHHHcCCCC
Confidence            345567899999999999999999999999999999999998889999999999999999999999999998753

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.83  E-value=3.7e-21  Score=155.23  Aligned_cols=74  Identities=55%  Similarity=0.907  Sum_probs=69.5

Q ss_pred             cCcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhhhhccccceee
Q 013277           75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKS  148 (446)
Q Consensus        75 ~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~~  148 (446)
                      ...|||+||||+++|+.+|||+|||+|++++|||+++++.+.++|++|++||++|+||.+|+.||.+|.+++..
T Consensus         5 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~   78 (88)
T 2ctr_A            5 SSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYDTLGHSAFTS   78 (88)
T ss_dssp             CCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCSHHHHHHHHHHHHHHHHHHSSHHHHHHHHTCHHHHTC
T ss_pred             CCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccccc
Confidence            35689999999999999999999999999999999998888999999999999999999999999999877654

>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.83  E-value=1.5e-21  Score=162.47  Aligned_cols=103  Identities=34%  Similarity=0.697  Sum_probs=93.8

Q ss_pred             CCceeEeeeeecccccccceeeeeccceeecccccCCccccCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCc
Q 013277          195 GEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGE  274 (446)
Q Consensus       195 g~di~~~l~ltlee~~~G~~k~~~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~  274 (446)
                      +.|++++|.|+|||+|+|.++++.+++.+.|+.|+|+|.+.+....+|+.|+|+|++...+    |+|++..+|+.|+|+
T Consensus         1 ~~~~~~~l~vslee~~~G~~~~i~~~~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~~~~~~----G~~~~~~~C~~C~G~   76 (104)
T 2ctt_A            1 GSSGSSGMELTFNQAAKGVNKEFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSGMETINT----GPFVMRSTCRRCGGR   76 (104)
T ss_dssp             CCCCCCCCCCCCSSCCSSSCTTCCSSCCEECSSSSSSSSCTTCCCEECSSSSSSCEEEEEE----TTEEEEEECSSSSSS
T ss_pred             CCceEEEEEEEHHHHcCCCEEEEEeeeeeECCCCcCCccCCCCCCccCCCCCCCEEEEEEe----CCEEEEEECCcCCCc
Confidence            3578899999999999999999999999999999999999888889999999999886543    667777899999999


Q ss_pred             ceEeceeeeecCCceEEEEeeEEEEEe
Q 013277          275 GEVISEYCRKCSGEGRIRLKKNIKVKV  301 (446)
Q Consensus       275 G~~~~~~C~~C~G~G~v~~~~~l~V~I  301 (446)
                      |++++++|..|+|.|.+.+.++|+|+|
T Consensus        77 G~~i~~~C~~C~G~G~v~~~k~l~V~~  103 (104)
T 2ctt_A           77 GSIIISPCVVCRGAGQAKQKKRSGPSS  103 (104)
T ss_dssp             SEECSSCCSSSSSCSEECCCCSSCCSC
T ss_pred             ceECCCcCCCCCCeeEEEEEEEEEEEc
Confidence            999999999999999999988888765

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.82  E-value=1.4e-20  Score=148.81  Aligned_cols=71  Identities=61%  Similarity=1.022  Sum_probs=66.3

Q ss_pred             cCcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhcchhhhhhhhhhccccc
Q 013277           75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAG  145 (446)
Q Consensus        75 ~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~  145 (446)
                      ...|||+||||+++|+.+|||+|||+|++++|||+++. +.+.+.|++|++||++|+||.+|+.||++|..+
T Consensus         5 ~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~   76 (79)
T 2dn9_A            5 SSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGSGP   76 (79)
T ss_dssp             CCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHSCCCC
T ss_pred             CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhccCcC
Confidence            45689999999999999999999999999999999974 678999999999999999999999999998754

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.82  E-value=8.1e-21  Score=149.73  Aligned_cols=71  Identities=55%  Similarity=0.953  Sum_probs=67.2

Q ss_pred             cCcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhhhhccccc
Q 013277           75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAG  145 (446)
Q Consensus        75 ~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~  145 (446)
                      ...|||+||||+++|+.+|||+|||++++++|||+++.+++.+.|++|++||++|+||.+|+.||++|.++
T Consensus         5 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~   75 (78)
T 2ctp_A            5 SSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQFGSGP   75 (78)
T ss_dssp             CSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSSHHHHHHHHHHHHHHHHHTSHHHHHHHHHTCSCS
T ss_pred             CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHcCccc
Confidence            35689999999999999999999999999999999988889999999999999999999999999998764

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A

Probab=99.81  E-value=2.3e-20  Score=145.19  Aligned_cols=70  Identities=54%  Similarity=0.874  Sum_probs=62.3

Q ss_pred             cccCcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhhhhcccc
Q 013277           73 VCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEA  144 (446)
Q Consensus        73 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~  144 (446)
                      +....|||+||||+++|+.+|||+||+++++++|||++++  +.+.|++|++||++|+||.+|+.||++|++
T Consensus         4 m~~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~--~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~   73 (73)
T 2och_A            4 MVKETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPD--GAEQFKQISQAYEVLSDEKKRQIYDQGGEE   73 (73)
T ss_dssp             --CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTT--CHHHHHHHHHHHHHHTSHHHHHHHHHTC--
T ss_pred             ccCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcC--HHHHHHHHHHHHHHHCCHHHHHHHHhcCCC
Confidence            4456799999999999999999999999999999999864  468999999999999999999999999863

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.81  E-value=2.8e-20  Score=156.87  Aligned_cols=75  Identities=31%  Similarity=0.541  Sum_probs=69.1

Q ss_pred             ecccCcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHhhcchhhhhhhhhhccccce
Q 013277           72 VVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGV  146 (446)
Q Consensus        72 ~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~-~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~  146 (446)
                      ......|||+||||+++|+.+|||+|||+|+++||||+++ ++.+.++|++|++||++|+||.+|+.||++|.+++
T Consensus        15 ~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~   90 (112)
T 2ctq_A           15 RSEDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRRSQM   90 (112)
T ss_dssp             CCCCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHTC
T ss_pred             cccCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhhhcc
Confidence            3345689999999999999999999999999999999998 57889999999999999999999999999997764

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.81  E-value=2.6e-20  Score=148.22  Aligned_cols=71  Identities=54%  Similarity=0.870  Sum_probs=65.7

Q ss_pred             CcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--chHHHHHHHHHHHhhcchhhhhhhhhhccccce
Q 013277           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEP--GATEKFKEISAAYEVLSDDKKRAMYDQYGEAGV  146 (446)
Q Consensus        76 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~--~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~  146 (446)
                      ..|||+||||+++|+.+|||+|||+|+++||||+++..  .+.+.|++|++||++|+||.+|+.||++|.+++
T Consensus         8 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~   80 (82)
T 2ej7_A            8 MVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYGSGPS   80 (82)
T ss_dssp             SCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCCCSC
T ss_pred             CcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCcccc
Confidence            46899999999999999999999999999999999763  577899999999999999999999999997654

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.81  E-value=2.7e-20  Score=151.47  Aligned_cols=73  Identities=52%  Similarity=0.797  Sum_probs=67.4

Q ss_pred             CcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--chHHHHHHHHHHHhhcchhhhhhhhhhccccceee
Q 013277           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEP--GATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKS  148 (446)
Q Consensus        76 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~--~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~~  148 (446)
                      ..|||+||||+++|+.+|||+|||+|+++||||+++..  .+.++|++|++||++|+||.+|+.||++|.+++..
T Consensus         8 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~   82 (92)
T 2dmx_A            8 MANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGCDSWRA   82 (92)
T ss_dssp             CCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCSCSSCC
T ss_pred             CcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccccC
Confidence            35899999999999999999999999999999999753  57889999999999999999999999999887654

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}

Probab=99.80  E-value=2.8e-20  Score=151.30  Aligned_cols=74  Identities=49%  Similarity=0.775  Sum_probs=67.5

Q ss_pred             cccCcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhhhhccccceee
Q 013277           73 VCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKS  148 (446)
Q Consensus        73 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~~  148 (446)
                      +.+..|||+||||+++|+.+|||+|||+|++++|||+++.  ..++|++|++||++|+||.+|+.||++|.++++.
T Consensus         4 m~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~--~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~~   77 (92)
T 2o37_A            4 MVKETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTG--DTEKFKEISEAFEILNDPQKREIYDQYGLEAARS   77 (92)
T ss_dssp             CCSCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTC--CHHHHHHHHHHHHHHTSHHHHHHHHHHCHHHHHT
T ss_pred             cccCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--hHHHHHHHHHHHHHHCCHHHHHHHHHHCHHHhhc
Confidence            4567899999999999999999999999999999999854  4679999999999999999999999999887654

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}

Probab=99.79  E-value=5e-20  Score=151.71  Aligned_cols=72  Identities=53%  Similarity=0.888  Sum_probs=64.2

Q ss_pred             cCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--chHHHHHHHHHHHhhcchhhhhhhhhhccccceee
Q 013277           77 GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEP--GATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKS  148 (446)
Q Consensus        77 ~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~--~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~~  148 (446)
                      .|||+||||+++|+.+|||+|||+|+++||||+++..  .+.+.|++|++||++|+||.+|+.||++|.+++..
T Consensus         2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~~~~~   75 (99)
T 2lgw_A            2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGREGLTG   75 (99)
T ss_dssp             CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC----
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccccC
Confidence            5899999999999999999999999999999999753  47889999999999999999999999999877653

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.79  E-value=6.9e-20  Score=153.67  Aligned_cols=76  Identities=45%  Similarity=0.801  Sum_probs=69.5

Q ss_pred             ecccCcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhcchhhhhhhhhhcccccee
Q 013277           72 VVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVK  147 (446)
Q Consensus        72 ~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~  147 (446)
                      ......|||+||||+++|+.+|||+|||+|++++|||++++ +.+.++|++|++||++|+||.+|+.||++|..++.
T Consensus        12 ~~~~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~~~~   88 (109)
T 2ctw_A           12 LSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGSLGLY   88 (109)
T ss_dssp             TTSCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTCHHHHH
T ss_pred             cCCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHhcccccc
Confidence            34557899999999999999999999999999999999974 67889999999999999999999999999987654

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.78  E-value=1.6e-19  Score=148.86  Aligned_cols=69  Identities=41%  Similarity=0.583  Sum_probs=64.2

Q ss_pred             ccCcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHhhcchhhhhhhhhhcc
Q 013277           74 CASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDKKRAMYDQYG  142 (446)
Q Consensus        74 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~-~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g  142 (446)
                      +...|||+||||+++|+.+|||+|||+|+++||||+++ ++.+.++|++|++||++|+||.+|+.||++.
T Consensus        14 ~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l   83 (99)
T 2yua_A           14 YSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRGL   83 (99)
T ss_dssp             SCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHTC
T ss_pred             CCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhc
Confidence            45679999999999999999999999999999999997 4678999999999999999999999999953

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1

Probab=99.77  E-value=1.6e-19  Score=147.37  Aligned_cols=70  Identities=31%  Similarity=0.563  Sum_probs=64.2

Q ss_pred             ccCcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-------cchHHHHHHHHHHHhhcchhhhhhhhhhccc
Q 013277           74 CASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-------PGATEKFKEISAAYEVLSDDKKRAMYDQYGE  143 (446)
Q Consensus        74 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~-------~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~  143 (446)
                      +...|||+||||+++|+.+|||+|||+|+++||||+++.       +.+.++|++|++||++|+||.+|+.||.+..
T Consensus        13 ~~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~   89 (94)
T 1wjz_A           13 TLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRS   89 (94)
T ss_dssp             SSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSC
T ss_pred             CCCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcc
Confidence            456799999999999999999999999999999999863       4578999999999999999999999999753

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}

Probab=99.74  E-value=8.1e-19  Score=147.19  Aligned_cols=72  Identities=38%  Similarity=0.631  Sum_probs=66.2

Q ss_pred             ecccCcCchhhcCCCCCC-CHHHHHHHHHHHHHHhCCCCCCC----cchHHHHHHHHHHHhhcchhhhhhhhhhccc
Q 013277           72 VVCASGDYYATLGVPKSA-SGKEIKAAYRKLARQYHPDVNKE----PGATEKFKEISAAYEVLSDDKKRAMYDQYGE  143 (446)
Q Consensus        72 ~~~~~~d~Y~iLgv~~~a-s~~eIk~ayr~l~~~~HPD~~~~----~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~  143 (446)
                      ......|||+||||+++| +.+|||+|||+|++++|||+++.    +.+.+.|++|++||++|+||.+|+.||+++.
T Consensus        10 ~~~~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~   86 (109)
T 2qsa_A           10 LYCGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLD   86 (109)
T ss_dssp             STTTTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred             HHcCCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcc
Confidence            444578999999999999 99999999999999999999875    5678999999999999999999999999874

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.74  E-value=1.4e-18  Score=161.92  Aligned_cols=72  Identities=47%  Similarity=0.845  Sum_probs=67.7

Q ss_pred             cCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHhhcchhhhhhhhhhccccceee
Q 013277           77 GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKS  148 (446)
Q Consensus        77 ~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~-~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~~  148 (446)
                      .|||++|||+++|+.+|||+|||+|+++||||+++ ++.+.++|++|++||++|+||.+|+.||++|.+++..
T Consensus         2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~~~   74 (210)
T 3apq_A            2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLED   74 (210)
T ss_dssp             CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTTTCCT
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHhccccccc
Confidence            48999999999999999999999999999999996 5778999999999999999999999999999887654

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.73  E-value=2.2e-18  Score=139.47  Aligned_cols=64  Identities=38%  Similarity=0.504  Sum_probs=60.5

Q ss_pred             ccCcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhh
Q 013277           74 CASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM  137 (446)
Q Consensus        74 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~  137 (446)
                      ....|||+||||+++|+.+|||+|||+|+++||||+++++++.++|++|++||++|+||.+|+.
T Consensus        24 ~~~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~   87 (90)
T 2ys8_A           24 RNSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKSGP   87 (90)
T ss_dssp             HTCSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred             hcCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCcccccC
Confidence            4568999999999999999999999999999999999988999999999999999999999864

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1

Probab=99.69  E-value=1.2e-17  Score=131.78  Aligned_cols=67  Identities=15%  Similarity=0.297  Sum_probs=60.0

Q ss_pred             CcCchhhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhhhhccccce
Q 013277           76 SGDYYATLGVPKS--ASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGV  146 (446)
Q Consensus        76 ~~d~Y~iLgv~~~--as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~  146 (446)
                      ..++|+||||+++  |+.+|||+|||+|++++|||++.   +.++|++|++||++|+|+.+|.. |.||..++
T Consensus        10 ~~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~---~~~~f~~i~~AYe~L~~~~~r~~-~~~g~~~~   78 (79)
T 1faf_A           10 KERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGG---SHALMQELNSLWGTFKTEVYNLR-MNLGGTGF   78 (79)
T ss_dssp             HHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSC---CHHHHHHHHHHHHHHHHHHHHHT-TCCSSCCC
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCC---CHHHHHHHHHHHHHHhhHHHHHH-HhcCCccC
Confidence            3589999999999  99999999999999999999974   46899999999999999999987 56776553

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}

Probab=99.69  E-value=1.9e-17  Score=147.59  Aligned_cols=69  Identities=32%  Similarity=0.549  Sum_probs=63.1

Q ss_pred             cCcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcc-------hHHHHHHHHHHHhhcchhhhhhhhhhccc
Q 013277           75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPG-------ATEKFKEISAAYEVLSDDKKRAMYDQYGE  143 (446)
Q Consensus        75 ~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~-------~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~  143 (446)
                      ...|||+||||+++|+.+|||+|||+|++++|||+++...       +.+.|++|++||++|+||.+|+.||..+.
T Consensus         8 ~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~~   83 (155)
T 2l6l_A            8 PKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQRC   83 (155)
T ss_dssp             CCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHHH
T ss_pred             CCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence            4569999999999999999999999999999999997642       56899999999999999999999998764

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1

Probab=99.68  E-value=4.2e-18  Score=143.44  Aligned_cols=65  Identities=31%  Similarity=0.510  Sum_probs=60.5

Q ss_pred             CcCchhhcCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhhhhccc
Q 013277           76 SGDYYATLGVPKSASG--KEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGE  143 (446)
Q Consensus        76 ~~d~Y~iLgv~~~as~--~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~  143 (446)
                      ..+||+||||+++|+.  +|||+|||+|++++|||++++   .++|++|++||++|+||.+|+.||.+|.
T Consensus         7 ~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~---~e~f~~I~~AYevL~d~~~R~~~~~~~~   73 (114)
T 1gh6_A            7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD---EEKMKKMNTLYKKMEDGVKYAHQPDFGG   73 (114)
T ss_dssp             HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT---TTTTHHHHHHHHHHHHHHHSCCSSCCSC
T ss_pred             hhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc---HHHHHHHHHHHHHHCCHHHHHHhhhccc
Confidence            4589999999999999  999999999999999999865   5789999999999999999999999874

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C

Probab=99.66  E-value=1.1e-17  Score=150.30  Aligned_cols=65  Identities=29%  Similarity=0.453  Sum_probs=58.0

Q ss_pred             CcCchhhcCCCCCCC--HHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhhhhccc
Q 013277           76 SGDYYATLGVPKSAS--GKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGE  143 (446)
Q Consensus        76 ~~d~Y~iLgv~~~as--~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~  143 (446)
                      ..|||++|||+++|+  .+|||+|||++|+++|||++++   .++|++|++||++|+||.+|+.||+||.
T Consensus        10 ~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~---~e~F~~I~~AYevLsdp~kR~~YD~~G~   76 (174)
T 2pf4_E           10 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD---EEKMKKMNTLYKKMEDGVKYAHQPDFGG   76 (174)
T ss_dssp             HHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---C---CTTTTHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred             cccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCC---HHHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence            468999999999998  6999999999999999999865   3789999999999999999999999985

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}

Probab=99.64  E-value=2.9e-16  Score=145.88  Aligned_cols=67  Identities=21%  Similarity=0.404  Sum_probs=59.9

Q ss_pred             cCcCchhhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCcc------hHHHHHHHHHHHhhcchhhhhhhhhhc
Q 013277           75 ASGDYYATLGVPKS--ASGKEIKAAYRKLARQYHPDVNKEPG------ATEKFKEISAAYEVLSDDKKRAMYDQY  141 (446)
Q Consensus        75 ~~~d~Y~iLgv~~~--as~~eIk~ayr~l~~~~HPD~~~~~~------~~~~f~~i~~Ay~vL~d~~~r~~yd~~  141 (446)
                      ...|||++|||+++  ++.++||+|||+|+++||||++++..      +.++|++|++||++|+||.+|+.||..
T Consensus        41 ~~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~~  115 (207)
T 3bvo_A           41 PTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLK  115 (207)
T ss_dssp             TTCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred             CCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence            36799999999986  78999999999999999999987532      457899999999999999999999963

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.63  E-value=6.1e-17  Score=130.08  Aligned_cols=62  Identities=23%  Similarity=0.220  Sum_probs=56.6

Q ss_pred             cCcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--chHHHHHHHHHHHhhcchhhhhh
Q 013277           75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEP--GATEKFKEISAAYEVLSDDKKRA  136 (446)
Q Consensus        75 ~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~--~~~~~f~~i~~Ay~vL~d~~~r~  136 (446)
                      ...++|+||||+++|+.+|||+|||+|+++||||++++.  .+.++|++|++||++|+|...|.
T Consensus        14 ~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r~   77 (88)
T 1iur_A           14 ILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFLD   77 (88)
T ss_dssp             CHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred             cHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhcccc
Confidence            456899999999999999999999999999999999863  47899999999999999988774

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J

Probab=99.60  E-value=2.4e-16  Score=142.53  Aligned_cols=63  Identities=21%  Similarity=0.412  Sum_probs=58.8

Q ss_pred             CcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcc----hHHHHHHHHHHHhhcchhhhhhhh
Q 013277           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPG----ATEKFKEISAAYEVLSDDKKRAMY  138 (446)
Q Consensus        76 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~----~~~~f~~i~~Ay~vL~d~~~r~~y  138 (446)
                      ..|||++|||+++|+.+|||+|||+++++||||+++...    +.++|++|++||++|+|+.+|+.|
T Consensus       116 ~~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~Y  182 (182)
T 1n4c_A          116 GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY  182 (182)
T ss_dssp             TCCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             ccchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence            369999999999999999999999999999999997644    788999999999999999999987

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1

Probab=99.59  E-value=5.9e-16  Score=139.82  Aligned_cols=65  Identities=28%  Similarity=0.455  Sum_probs=59.9

Q ss_pred             CchhhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCcc------hHHHHHHHHHHHhhcchhhhhhhhhhcc
Q 013277           78 DYYATLGVPKSA--SGKEIKAAYRKLARQYHPDVNKEPG------ATEKFKEISAAYEVLSDDKKRAMYDQYG  142 (446)
Q Consensus        78 d~Y~iLgv~~~a--s~~eIk~ayr~l~~~~HPD~~~~~~------~~~~f~~i~~Ay~vL~d~~~r~~yd~~g  142 (446)
                      |||++|||++++  +.++||+|||+|+++||||++++..      +.++|+.|++||++|+||.+|+.||...
T Consensus         2 d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l   74 (171)
T 1fpo_A            2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSL   74 (171)
T ss_dssp             HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHT
T ss_pred             CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHh
Confidence            799999999999  9999999999999999999987643      4578999999999999999999999864

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=99.58  E-value=5.8e-16  Score=119.50  Aligned_cols=58  Identities=22%  Similarity=0.289  Sum_probs=52.5

Q ss_pred             cCcCchhhcCCCC-CCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhh
Q 013277           75 ASGDYYATLGVPK-SASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKR  135 (446)
Q Consensus        75 ~~~d~Y~iLgv~~-~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~r  135 (446)
                      ...++|+||||++ +|+.+|||+|||+|++++|||++   ++.+.|++|++||++|+|+..|
T Consensus        12 ~~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~---g~~~~f~~i~~Aye~L~~~~~r   70 (71)
T 2guz_A           12 NSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKG---GSPFLATKINEAKDFLEKRGIS   70 (71)
T ss_dssp             CHHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGT---CCHHHHHHHHHHHHHHHHHCCC
T ss_pred             CHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCC---CCHHHHHHHHHHHHHHhhhhhc
Confidence            3468999999999 79999999999999999999996   4567999999999999998765

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.57  E-value=2.6e-16  Score=173.74  Aligned_cols=78  Identities=44%  Similarity=0.749  Sum_probs=40.9

Q ss_pred             ecccCcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHhhcchhhhhhhhhhccccceeec
Q 013277           72 VVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKST  149 (446)
Q Consensus        72 ~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~-~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~~~  149 (446)
                      ......|||++|||+++|+.+|||+|||+|+++||||+++ ++.+.++|++|++||++|+||.+|+.||+||+++++..
T Consensus        16 ~~~~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~~~~~~   94 (780)
T 3apo_A           16 EGRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLEDN   94 (780)
T ss_dssp             -------CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC--------
T ss_pred             CCCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHHHHHhhcccccccC
Confidence            4556789999999999999999999999999999999996 57788999999999999999999999999999887654

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A

Probab=99.57  E-value=5.6e-16  Score=124.96  Aligned_cols=55  Identities=20%  Similarity=0.331  Sum_probs=50.8

Q ss_pred             cCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcc----hHHHHHHHHHHHhhcch
Q 013277           77 GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPG----ATEKFKEISAAYEVLSD  131 (446)
Q Consensus        77 ~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~----~~~~f~~i~~Ay~vL~d  131 (446)
                      .++|++|||+++|+.+|||+|||+++++||||++++..    +.++|++|++||++|.+
T Consensus        33 ~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~   91 (92)
T 2qwo_B           33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN   91 (92)
T ss_dssp             CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence            58999999999999999999999999999999997532    78899999999999975

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}

Probab=99.54  E-value=7.7e-16  Score=127.97  Aligned_cols=61  Identities=13%  Similarity=0.262  Sum_probs=53.2

Q ss_pred             ecccCcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--------chHHHHHHHHHHHhhcchhh
Q 013277           72 VVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEP--------GATEKFKEISAAYEVLSDDK  133 (446)
Q Consensus        72 ~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~--------~~~~~f~~i~~Ay~vL~d~~  133 (446)
                      ..+...|||++||++. |+.+|||+|||+++++||||+++++        .+.++|++|++||++|+|+.
T Consensus        36 ~l~~~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~  104 (106)
T 3ag7_A           36 ILWSGSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG  104 (106)
T ss_dssp             TSCTTSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HhcccCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence            3345679999999996 9999999999999999999998642        25789999999999999975

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A

Probab=99.52  E-value=2.8e-15  Score=136.40  Aligned_cols=65  Identities=25%  Similarity=0.496  Sum_probs=59.1

Q ss_pred             CcCchhhc------CCCC-CCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhhhhcc
Q 013277           76 SGDYYATL------GVPK-SASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYG  142 (446)
Q Consensus        76 ~~d~Y~iL------gv~~-~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g  142 (446)
                      ..|||++|      |+++ +|+.++||+|||+|+++||||++++  +.++|++|++||++|+||.+|+.||...
T Consensus        10 ~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~--a~~~f~~i~~AY~vL~dp~~R~~Yd~~l   81 (181)
T 3uo3_A           10 TSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ--GSEQSSTLNQAYHTLKDPLRRSQYMLKL   81 (181)
T ss_dssp             SCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCS--CSSGGGSHHHHHHHHHSHHHHHHHHHHH
T ss_pred             CCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCcc--HHHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence            46999999      4665 9999999999999999999999875  6788999999999999999999999843

>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1

Probab=99.49  E-value=3.5e-14  Score=111.77  Aligned_cols=78  Identities=44%  Similarity=0.981  Sum_probs=69.1

Q ss_pred             cceeeeeccceeecccccCCccccCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeecCCceEE
Q 013277          212 GAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRI  291 (446)
Q Consensus       212 G~~k~~~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v  291 (446)
                      |++++|.+++.+.|+.|+|+|........+|+.|+|+|+++..+    |+|+...+|+.|+|.|++++++|..|+|.|.+
T Consensus         1 G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~~   76 (79)
T 1exk_A            1 GVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQ----GFFAVQQTCPHCQGRGTLIKDPCNKCHGHGRV   76 (79)
T ss_dssp             CTTTSCCCCCEEECGGGTTTSBCSSSCCEECTTTTTSSEEEEEE----TTEEEEEECTTTTTSSEECSSBCGGGTTSSEE
T ss_pred             CcEEEEEcccceECCCCcccccCCCccCCCCCCCcCeEEEEEEc----CCCEEeeECcCCCCccEECCCcCCCCCCeEEE
Confidence            56788999999999999999998777778999999999987643    77777789999999999999999999999987


Q ss_pred             EE
Q 013277          292 RL  293 (446)
Q Consensus       292 ~~  293 (446)
                      .+
T Consensus        77 ~~   78 (79)
T 1exk_A           77 ER   78 (79)
T ss_dssp             EC
T ss_pred             ee
Confidence            53

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1

Probab=99.47  E-value=4.3e-14  Score=135.22  Aligned_cols=118  Identities=22%  Similarity=0.476  Sum_probs=82.9

Q ss_pred             eeecccccCCccccC---------cceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeec-------
Q 013277          222 LETCEVCTGTGAKMG---------SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC-------  285 (446)
Q Consensus       222 ~~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C-------  285 (446)
                      ...|+.|+|+|....         ....+|+.|+|+|+++...          .+|+.|+|.|.+.+.+-.+.       
T Consensus        54 ~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~~~----------~~C~~C~G~g~~~~~~~l~V~Ip~G~~  123 (248)
T 1nlt_A           54 VKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDPK----------DRCKSCNGKKVENERKILEVHVEPGMK  123 (248)
T ss_dssp             CCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCCTT----------SBCSSSTTSCEEEEEEEEEEEECTTCC
T ss_pred             CccCCCCCCCcEEEEEEecCceEEEEEEcCCCCCCcCEEeccC----------CCCcccCCCceEeeeEEEEEEECCCcc
Confidence            378999999997521         2366899999999876321          78999999998765433322       


Q ss_pred             -------CCceE---------E----------------------------------------EEeeEEEEEeCCC--CCC
Q 013277          286 -------SGEGR---------I----------------------------------------RLKKNIKVKVPPG--VST  307 (446)
Q Consensus       286 -------~G~G~---------v----------------------------------------~~~~~l~V~Ip~G--~~~  307 (446)
                             .|+|.         +                                        .+.+.++|+||+|  +++
T Consensus       124 ~G~~ir~~g~G~~~~~g~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~~i~ip~g~vt~~  203 (248)
T 1nlt_A          124 DGQRIVFKGEADQAPDVIPGDVVFIVSERPHKSFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAP  203 (248)
T ss_dssp             TTCEEEETTCSCCCTTCBCCCEEEEEEECCCSSCEEETTEEEEEEEEEHHHHHHCBCCEEECSSSCEEECCBCTTTTCST
T ss_pred             CCCEEEEeeeecCCCCCCcceEEEEEEEecCccceeeCCEEEEEEEeCHHHHhcCCEEEEeCCCCCEEEEEeCCCCeeCC
Confidence                   33332         1                                        2344799999999  999


Q ss_pred             CCEEEEccCCCCCCCCCCCccEEEEEEEEeccC--cccCCcceE
Q 013277          308 GSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPG--IQRDGIDLF  349 (446)
Q Consensus       308 G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~~~~--f~R~g~dL~  349 (446)
                      |++++|+|+|++..++...|||||+|+|..|..  +..++.+|+
T Consensus       204 g~~~rl~g~Gmp~~~~~~~GDL~V~~~V~~P~~~~Ls~~q~~~l  247 (248)
T 1nlt_A          204 GMRKVIEGKGMPIPKYGGYGNLIIKFTIKDPENHFTSEENLKKL  247 (248)
T ss_dssp             TCEEEETTCSCBCSSSCSBCCEEEEEEEECCC------------
T ss_pred             CeEEEEcCCCCccCCCCCcCCEEEEEEEECCCCCCCCHHHHHhh
Confidence            999999999999764436799999999999887  776665554

>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}

Probab=99.05  E-value=9.7e-11  Score=97.69  Aligned_cols=52  Identities=27%  Similarity=0.524  Sum_probs=44.8

Q ss_pred             EEEEEeCCCCCCCCEEEEccCCCCCCCCCCCccEEEEEEEEeccCcccCCcceE
Q 013277          296 NIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLF  349 (446)
Q Consensus       296 ~l~V~Ip~G~~~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~~~~f~R~g~dL~  349 (446)
                      .++|+||+|+++|++++++|+|++. .+ .+|||||+|+|..+..+..++.+++
T Consensus        39 ~~~v~ip~g~~~G~~~rl~G~G~p~-~~-~~GDL~v~~~V~~P~~Ls~~q~~~l   90 (109)
T 3i38_A           39 SILLTVPPGSQAGQRLRIKGKGLVS-KT-HTGDLFAVIKIVMPTKPDEKARELW   90 (109)
T ss_dssp             CEEEEECTTCCTTCEEEETTCSCBC-SS-CBCCEEEEEEECCCSSCCHHHHHHH
T ss_pred             CEEEeeCCCcCcCeEEEECCccCCC-CC-CCcCEEEEEEEECCCCCCHHHHHHH
Confidence            4689999999999999999999997 34 7899999999999888776665554

>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae}

Probab=99.01  E-value=2.7e-10  Score=96.86  Aligned_cols=55  Identities=20%  Similarity=0.361  Sum_probs=42.8

Q ss_pred             eEEEEEeCCC--CCCCCEEEEccCCCCCCCCCCCccEEEEEEEEeccC--cccCCcceE
Q 013277          295 KNIKVKVPPG--VSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPG--IQRDGIDLF  349 (446)
Q Consensus       295 ~~l~V~Ip~G--~~~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~~~~--f~R~g~dL~  349 (446)
                      +.++|+||+|  +++|++++++|+|++..++...|||||+|+|+.+..  +..++.+++
T Consensus        34 ~~~~v~ip~g~v~~~G~~~rl~G~Gmp~~~~~~~GDL~V~~~V~~P~~~~ls~~q~~~l   92 (121)
T 1xao_A           34 DWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTIKFPENHFTSEENLKKL   92 (121)
T ss_dssp             CEEEEEECTTSCCCTTCEEEETTCSCC------CCCEEEEEEEECCCTTCSCHHHHHHH
T ss_pred             CEEEEEeCCCCeeCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHH
Confidence            3578999999  999999999999999765446899999999998887  776665553

>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=98.86  E-value=1.2e-09  Score=81.96  Aligned_cols=53  Identities=15%  Similarity=0.120  Sum_probs=48.4

Q ss_pred             cCchhhcCCCCC---CCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchh
Q 013277           77 GDYYATLGVPKS---ASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDD  132 (446)
Q Consensus        77 ~d~Y~iLgv~~~---as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~  132 (446)
                      .+.|.||||+++   ++.++|+++||+|+..+|||+.   +......+|++|++.|...
T Consensus         4 ~EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkG---GS~yl~~ki~~Ake~l~~~   59 (65)
T 2guz_B            4 DESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKG---GSFYLQSKVYRAAERLKWE   59 (65)
T ss_dssp             HHHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGT---CCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCC---CCHHHHHHHHHHHHHHHHH
Confidence            467999999999   9999999999999999999997   6788999999999999754

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=98.84  E-value=1.5e-09  Score=109.34  Aligned_cols=65  Identities=49%  Similarity=0.714  Sum_probs=55.8

Q ss_pred             CcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcc----hHHHHHHHHHHHhhcchhhhhhhhhh
Q 013277           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPG----ATEKFKEISAAYEVLSDDKKRAMYDQ  140 (446)
Q Consensus        76 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~----~~~~f~~i~~Ay~vL~d~~~r~~yd~  140 (446)
                      ..++|++||+.+.++.++|+++|+++++++|||+.+.+.    +.+.|++|++||++|+||++|..||+
T Consensus       381 ~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~  449 (450)
T 2y4t_A          381 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD  449 (450)
T ss_dssp             SCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-----
T ss_pred             chhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccC
Confidence            348999999999999999999999999999999987643    78899999999999999999999997

>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A

Probab=98.71  E-value=3.9e-09  Score=95.03  Aligned_cols=92  Identities=16%  Similarity=0.199  Sum_probs=74.6

Q ss_pred             ceEEEEeecHHHHhCCCEEEEecc----CC-----eEEEEeCCCCCCCcEEEEccCCCCCCCCCCCCCCEEEEEEEEcCC
Q 013277          347 DLFSTISISYLDAIMGTVVKVKTV----EG-----ISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPN  417 (446)
Q Consensus       347 dL~~~~~Isl~eAl~G~~~~i~~l----dG-----~~~l~i~~~~~~g~~~~l~g~G~P~~~~~~~~GdL~v~~~v~~P~  417 (446)
                      |+.+++.|||.||+.|++++|...    +|     .++|+||+|+..|++++++|+|-|...+ +..|||||++++.-..
T Consensus         2 d~~~~l~islee~~~G~~k~i~~~~~~~~G~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~~~~g-g~~GDl~v~i~v~~h~   80 (170)
T 1c3g_A            2 TVQVNLPVSLEDLFVGKKKSFKIGRKGPHGASEKTQIDIQLKPGWKAGTKITYKNQGDYNPQT-GRRKTLQFVIQEKSHP   80 (170)
T ss_dssp             EEEEEEEECHHHHHHTCEEEEEEEEEETTTEEEEEEEEEECCTTCCTTCEEEESSCSSBCSSS-SCBCEEEEEEEECCCS
T ss_pred             CEEEEEEeEHHHhhCCcEEEEEEEEecCCCcEEeEEEEEEeCCCccCCCEEEEeccccCCCCC-CccccEEEEEEEccCC
Confidence            889999999999999999888643    23     3589999999999999999999865433 4679999999998777


Q ss_pred             CCCcchHHHHHHHhhccchhee
Q 013277          418 RIRYVYSPSLTIIQLNSVIILL  439 (446)
Q Consensus       418 ~ls~~~~~~l~~l~~~~~~~~~  439 (446)
                      .+..+..+++..+....++|+|
T Consensus        81 ~F~R~G~DL~~~~~Isl~eAll  102 (170)
T 1c3g_A           81 NFKRDGDDLIYTLPLSFKESLL  102 (170)
T ss_dssp             SEEEETTEEEEEECCBHHHHHH
T ss_pred             ccEEeCCcEeEEEEcCHHHHhC
Confidence            7777776666666666666654

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A

Probab=98.71  E-value=2.7e-09  Score=105.77  Aligned_cols=96  Identities=17%  Similarity=0.217  Sum_probs=72.5

Q ss_pred             cCCcceEEEEeecHHHHhCCCEEEEecc------CC--------eEEEEeCCCCCCCcEEEEccCCCCCCCCCCCCCCEE
Q 013277          343 RDGIDLFSTISISYLDAIMGTVVKVKTV------EG--------ISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHL  408 (446)
Q Consensus       343 R~g~dL~~~~~Isl~eAl~G~~~~i~~l------dG--------~~~l~i~~~~~~g~~~~l~g~G~P~~~~~~~~GdL~  408 (446)
                      +.|.||.+++.|+|.||+.|.++.|..-      .|        .++|+||+|+++|++++++|+|.|..++ +..||||
T Consensus       138 ~~g~Dl~~~l~vsleea~~G~~k~i~i~~~v~~g~G~v~~~~~~~l~V~IP~Gv~~G~~Irl~G~G~~g~~g-g~~GDL~  216 (329)
T 3lz8_A          138 ARGHDLEIEVAVFLEETLAEQTRTISYNLPVYNVFGMIESETPKTLNVKIPAGVVDGQRIRLKGQGTPGENG-GPNGDLW  216 (329)
T ss_dssp             CCCCCEEEEECCCTTGGGSCEEEEEEEEEEECCSCC-CCEEEEEEEEEEECTTCCTTCEEEESSCSCCC----CCCCCEE
T ss_pred             CCCCCEEEEEecchhhhhhccceEEEEEEEeecCCeEEEEecceEEEEeCCCCCCCCCEEEEcccccCCCCC-CCCCcEE
Confidence            5678888888899999998887666432      22        3579999999999999999999987543 4689999


Q ss_pred             EEEEEEcCCCCCcchHHHHHHHhhccchhee
Q 013277          409 FTVKVTIPNRIRYVYSPSLTIIQLNSVIILL  439 (446)
Q Consensus       409 v~~~v~~P~~ls~~~~~~l~~l~~~~~~~~~  439 (446)
                      |+|+|+-...+..+..+|+..+.+..|+++|
T Consensus       217 v~I~v~~h~~F~R~G~DL~~~~~Isl~eAll  247 (329)
T 3lz8_A          217 LVIHIAPHPLFDIVGHNLEIVLPLAPWEAAL  247 (329)
T ss_dssp             EEECCCCCSSCEEETTEEEEEEEECHHHHHH
T ss_pred             EEEEEecCCccEEcCCcEEEEEECCHHHHcC
Confidence            9999988777766666665555555555544

>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}

Probab=98.69  E-value=6e-09  Score=94.67  Aligned_cols=94  Identities=16%  Similarity=0.216  Sum_probs=74.6

Q ss_pred             CcceEEEEeecHHHHhCCCEEEEeccC------------CeEEEEeCCCCCCCcEEEEccCCCCCCCCCCCCCCEEEEEE
Q 013277          345 GIDLFSTISISYLDAIMGTVVKVKTVE------------GISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVK  412 (446)
Q Consensus       345 g~dL~~~~~Isl~eAl~G~~~~i~~ld------------G~~~l~i~~~~~~g~~~~l~g~G~P~~~~~~~~GdL~v~~~  412 (446)
                      +.|+.+.+.|||.||+.|.+++|....            ..++|+||+|+..|++++++|+|-+... .+..|||||+++
T Consensus         3 g~d~~~~l~islee~~~G~~k~i~~~~~~~c~~g~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~g~~-gg~~GDl~v~i~   81 (180)
T 2q2g_A            3 PRSHEVPLLVTLEELYLGKRKKIKVTRKRFIEHKVRNEENIVEVEIKPGWKDGTKLTYSGEGDQESP-GTSPGDLVLIIQ   81 (180)
T ss_dssp             -CEEEEEEEECHHHHHHCEEEEEEEEEEEEETTEEEEEEEEEEEEECTTCCTTCEEEETTCSCCSST-TSCCCEEEEEEE
T ss_pred             CCCEEEEEEeeHHHhcCCcEEEEEEeEEEecCCceEEeeEEEEEEECCCCcCCcEEEEeeccCCCCC-CCccccEEEEEE
Confidence            679999999999999999998876431            2358999999999999999999987322 246799999999


Q ss_pred             EEcCCCCCcchHHHHHHHhhccchhee
Q 013277          413 VTIPNRIRYVYSPSLTIIQLNSVIILL  439 (446)
Q Consensus       413 v~~P~~ls~~~~~~l~~l~~~~~~~~~  439 (446)
                      +.-...+..+..+++..+....++|++
T Consensus        82 ~~~h~~F~R~G~DL~~~~~Isl~eAll  108 (180)
T 2q2g_A           82 TKTHPRFTRDDCHLIMKVTIPLVRALT  108 (180)
T ss_dssp             ECCCSSCEEETTEEEEEEEEEHHHHHH
T ss_pred             EEecccEEEcCCEEEEEEEcCHHHHhC
Confidence            987777777776666666666666654

>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A

Probab=98.63  E-value=9.5e-09  Score=93.39  Aligned_cols=93  Identities=20%  Similarity=0.234  Sum_probs=72.3

Q ss_pred             CcceEEEEeecHHHHhCCCEEEEecc------CC--------eEEEEeCCCCCCCcEEEEccCCCCCCCCCCCCCCEEEE
Q 013277          345 GIDLFSTISISYLDAIMGTVVKVKTV------EG--------ISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFT  410 (446)
Q Consensus       345 g~dL~~~~~Isl~eAl~G~~~~i~~l------dG--------~~~l~i~~~~~~g~~~~l~g~G~P~~~~~~~~GdL~v~  410 (446)
                      +.|+.+.+.|||.||+.|.+++|...      .|        .++|+||+|+..|++++++|+|-+..+  +..|||||.
T Consensus         2 ~~d~~~~l~islee~~~G~~k~i~i~~~c~~c~G~g~~~~~~~l~V~Ip~G~~~G~~ir~~G~G~~~~~--g~~GDl~v~   79 (181)
T 3agx_A            2 DPPVTHDLRVSLEEIYSGCTKKMKISHKRLNPDGKSIRNEDKILTIEVKKGWKEGTKITFPKEGDQTSN--NIPADIVFV   79 (181)
T ss_dssp             ----CEEEEECHHHHHHCEEEEEEEEEEEECTTSSCEEEEEEEEEEEECTTCCTTCEEEETTCSCCCSS--SCCCCEEEE
T ss_pred             CCCEEEEEEEEHHHhcCCcEEEEEEecccCCCCCceEEEEeEEEEEEECCCccCCcEEEEeeccccCCC--CCcccEEEE
Confidence            56899999999999999999877532      23        247999999999999999999988653  467999999


Q ss_pred             EEEEcCCCCCcchHHHHHHHhhccchhee
Q 013277          411 VKVTIPNRIRYVYSPSLTIIQLNSVIILL  439 (446)
Q Consensus       411 ~~v~~P~~ls~~~~~~l~~l~~~~~~~~~  439 (446)
                      +++.-...+..+..+++..+....++|++
T Consensus        80 i~~~~h~~F~R~G~DL~~~~~Isl~eAll  108 (181)
T 3agx_A           80 LKDKPHNIFKRDGSDVIYPARISLREALC  108 (181)
T ss_dssp             EEECCCSSCEEETTEEEEEEEEEHHHHHH
T ss_pred             EEEeccccceeeCCcEEEEEEcCHHHHhC
Confidence            99998777777776666666666666654

>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.78  E-value=1.2e-05  Score=66.01  Aligned_cols=51  Identities=29%  Similarity=0.720  Sum_probs=40.1

Q ss_pred             ceeecccccCCccccC-----cceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeee
Q 013277          221 HLETCEVCTGTGAKMG-----SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCR  283 (446)
Q Consensus       221 ~~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~  283 (446)
                      ....|+.|+|+|....     ....+|+.|+|+|+++.            .+|+.|+|.|++.+.+-.
T Consensus        44 ~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i~------------~~C~~C~G~G~v~~~k~l   99 (104)
T 2ctt_A           44 KVQHCHYCGGSGMETINTGPFVMRSTCRRCGGRGSIII------------SPCVVCRGAGQAKQKKRS   99 (104)
T ss_dssp             CCEECSSSSSSCEEEEEETTEEEEEECSSSSSSSEECS------------SCCSSSSSCSEECCCCSS
T ss_pred             CCccCCCCCCCEEEEEEeCCEEEEEECCcCCCcceECC------------CcCCCCCCeeEEEEEEEE
Confidence            3578999999997532     23578999999999864            689999999998765433

>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1

Probab=97.72  E-value=1.3e-05  Score=62.28  Aligned_cols=47  Identities=32%  Similarity=0.798  Sum_probs=37.4

Q ss_pred             ceeecccccCCccccCc-----ceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEec
Q 013277          221 HLETCEVCTGTGAKMGS-----KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVIS  279 (446)
Q Consensus       221 ~~~~C~~C~G~G~~~~~-----~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~  279 (446)
                      ....|+.|+|+|.....     ...+|+.|+|+|.++.            .+|+.|+|.|++.+
T Consensus        27 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~G~~~~   78 (79)
T 1exk_A           27 QPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLIK------------DPCNKCHGHGRVER   78 (79)
T ss_dssp             CCEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEECS------------SBCGGGTTSSEEEC
T ss_pred             cCCCCCCCcCeEEEEEEcCCCEEeeECcCCCCccEECC------------CcCCCCCCeEEEee
Confidence            35689999999976421     2468999999998753            68999999998753

>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer membrane, electron trans; HET: HEC; 3.20A {Shewanella oneidensis}

Probab=97.72  E-value=1.2e-06  Score=93.66  Aligned_cols=78  Identities=19%  Similarity=0.356  Sum_probs=59.3

Q ss_pred             eEeeeeecccccccceeeeeccceeecccccCCccccCc---ceeeCCCCCCccEEEEe--------eeCCceee-eeee
Q 013277          199 RYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGS---KMRICSTCGGRGQVMRT--------DQTPFGLF-SQVS  266 (446)
Q Consensus       199 ~~~l~ltlee~~~G~~k~~~~~~~~~C~~C~G~G~~~~~---~~~~C~~C~G~G~~~~~--------~~~~~g~~-~~~~  266 (446)
                      .+++.++|+|+.+|.++++++.+.+.|..|+|+|++.+.   ...+|+.|+|+......        ...-.|.| +...
T Consensus       168 ~~~l~i~feeA~~G~~k~i~v~~~~~C~tCHGsGA~~Gt~~~~~~tC~tCHGs~~~~~~~~~~~~~iH~iH~G~fP~~~~  247 (669)
T 3pmq_A          168 ITNQHYDWQSSGNMLAYTRNLVSIDTCNSCHSNLAFHGGRYNQVETCVTCHNSKKVSNAADIFPQMIHSKHLTGFPQSIS  247 (669)
T ss_dssp             SCCCEEEEECSSSSCCCCCCCCCSHHHHHHHSSCCTTTTTSCSSSCSTTTSSTTTCCCSSCSHHHHHHHHTTSSCSSCTT
T ss_pred             eEEEEEEhHHhhCCCceEEEeccCCcCCCCCCCCCcCCccCcCCccCCCCCCCcccCCccccccceeeeeeccCCCCccC
Confidence            468899999999999999999999999999999999887   57899999999421110        00111222 2336


Q ss_pred             cCCCCCCcce
Q 013277          267 VCPSCGGEGE  276 (446)
Q Consensus       267 ~C~~C~G~G~  276 (446)
                      .|..|+..+.
T Consensus       248 ~C~~CH~~~~  257 (669)
T 3pmq_A          248 NCQTCHADNP  257 (669)
T ss_dssp             CCTTTSCCCT
T ss_pred             cchhhcCCcc
Confidence            8999998774

>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A

Probab=97.34  E-value=4.5e-05  Score=54.53  Aligned_cols=28  Identities=43%  Similarity=0.947  Sum_probs=20.5

Q ss_pred             ecCCCCCCcceEeceeeeecCCceEEEE
Q 013277          266 SVCPSCGGEGEVISEYCRKCSGEGRIRL  293 (446)
Q Consensus       266 ~~C~~C~G~G~~~~~~C~~C~G~G~v~~  293 (446)
                      .+|+.|+|+|.++.++|+.|+|.|.+.+
T Consensus        10 ~~C~~C~GsG~~i~~~C~~C~G~G~v~~   37 (53)
T 3lcz_A           10 TTCPNCNGSGREEPEPCPKCLGKGVILT   37 (53)
T ss_dssp             EECTTTTTSCEETTEECTTTTTSSEEEC
T ss_pred             ccCcCCcccccCCCCcCCCCCCcEEEEE
Confidence            5777777777777777777777776654

>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*

Probab=97.18  E-value=4.7e-05  Score=54.45  Aligned_cols=30  Identities=27%  Similarity=0.751  Sum_probs=20.0

Q ss_pred             eeecccccCCccccCcceeeCCCCCCccEEEEe
Q 013277          222 LETCEVCTGTGAKMGSKMRICSTCGGRGQVMRT  254 (446)
Q Consensus       222 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~  254 (446)
                      ...|+.|+|+|....   .+|+.|+|.|+++..
T Consensus         9 ~~~C~~C~GsG~~~~---~~C~~C~G~G~v~~~   38 (53)
T 2bx9_A            9 EVACPKCERAGEIEG---TPCPACSGKGVILTA   38 (53)
T ss_dssp             EEECTTTTTSSEETT---EECTTTTTSSEEECH
T ss_pred             cccCCCCcceeccCC---CCCccCCCCccEEEE
Confidence            456777777777642   467777777776553

>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A

Probab=97.11  E-value=0.00021  Score=51.09  Aligned_cols=13  Identities=38%  Similarity=1.104  Sum_probs=7.1

Q ss_pred             ecCCCCCCcceEe
Q 013277          266 SVCPSCGGEGEVI  278 (446)
Q Consensus       266 ~~C~~C~G~G~~~  278 (446)
                      .+|+.|+|+|.+.
T Consensus        24 ~~C~~C~G~G~v~   36 (53)
T 3lcz_A           24 EPCPKCLGKGVIL   36 (53)
T ss_dssp             EECTTTTTSSEEE
T ss_pred             CcCCCCCCcEEEE
Confidence            4555555555543

>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*

Probab=96.60  E-value=0.00089  Score=47.76  Aligned_cols=29  Identities=28%  Similarity=0.878  Sum_probs=17.7

Q ss_pred             eeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEec
Q 013277          239 MRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVIS  279 (446)
Q Consensus       239 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~  279 (446)
                      ..+|+.|+|+|.++.            .+|+.|+|.|+++.
T Consensus         9 ~~~C~~C~GsG~~~~------------~~C~~C~G~G~v~~   37 (53)
T 2bx9_A            9 EVACPKCERAGEIEG------------TPCPACSGKGVILT   37 (53)
T ss_dssp             EEECTTTTTSSEETT------------EECTTTTTSSEEEC
T ss_pred             cccCCCCcceeccCC------------CCCccCCCCccEEE
Confidence            456777777776531            46666666666543

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=84.75  E-value=0.36  Score=51.74  Aligned_cols=48  Identities=23%  Similarity=0.333  Sum_probs=38.2

Q ss_pred             ccCcCchhhcCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhh
Q 013277           74 CASGDYYATLGVPKSASG--KEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEV  128 (446)
Q Consensus        74 ~~~~d~Y~iLgv~~~as~--~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~v  128 (446)
                      ...+|||.+||++.++..  .+|++|||++|+..+++       .+++..|..|+.|
T Consensus       626 ~~~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~-------~~r~~lvd~a~~v  675 (681)
T 2pzi_A          626 DNKASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ-------RHRYTLVDMANKV  675 (681)
T ss_dssp             SCCCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH-------HHHHHHHHHHHHH
T ss_pred             ccCCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh-------HHHHHHHHHhccc
Confidence            446679999999777665  77999999999965544       5788888888875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	446
d1xbla_	75	a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain	1e-25
d1hdja_	77	a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9	3e-24
d1wjza_	94	a.2.3.1 (A:) CSL-type zinc finger-containing prote	1e-20
d1fpoa1	76	a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) doma	4e-20
d1iura_	88	a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human	7e-20
d1exka_	79	g.54.1.1 (A:) Cysteine-rich domain of the chaperon	1e-19
d1nz6a_	98	a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [T	2e-19
d1fafa_	79	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	1e-18
d1gh6a_	114	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	3e-18
d1nlta3	74	g.54.1.1 (A:139-212) Mitochondrial protein import	1e-17
d1m1qa_	90	a.138.1.3 (A:) Flavocytochrome c3 (respiratory fum	9e-17
d1c3ga1	80	b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Ba	1e-13
d1c3ga1	80	b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Ba	0.002
d1c3ga2	90	b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Ba	4e-12
d1nlta2	80	b.4.1.1 (A:258-337) Mitochondrial protein import p	9e-12
d1nlta2	80	b.4.1.1 (A:258-337) Mitochondrial protein import p	6e-04
d1nlta1	74	b.4.1.1 (A:110-138,A:213-257) Mitochondrial protei	1e-07
d1nlta1	74	b.4.1.1 (A:110-138,A:213-257) Mitochondrial protei	2e-06
d1qo8a1	101	a.138.1.3 (A:2-102) Flavocytochrome c3 (respirator	2e-05

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 75

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 97.0 bits (241), Expect = 1e-25
 Identities = 41/74 (55%), Positives = 52/74 (70%), Gaps = 1/74 (1%)

Query: 75  ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDK 133
           A  DYY  LGV K+A  +EI+ AY++LA +YHPD N+ +  A  KFKEI  AYEVL+D +
Sbjct: 1   AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQ 60

Query: 134 KRAMYDQYGEAGVK 147
           KRA YDQYG A  +
Sbjct: 61  KRAAYDQYGHAAFE 74

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.6 bits (232), Expect = 3e-24
 Identities = 47/76 (61%), Positives = 59/76 (77%), Gaps = 3/76 (3%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAM 137
           DYY TLG+ + AS +EIK AYR+ A +YHPD NKEPGA EKFKEI+ AY+VLSD +KR +
Sbjct: 4   DYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREI 63

Query: 138 YDQYGEAGVKSTVGGG 153
           +D+YGE G+K   G G
Sbjct: 64  FDRYGEEGLK---GSG 76

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 84.3 bits (208), Expect = 1e-20
 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 7/72 (9%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVN-------KEPGATEKFKEISAAYEVLS 130
           D+Y+ LG   SA+  ++K  Y+KL   YHPD               +KF EI  A+++L 
Sbjct: 17  DWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILG 76

Query: 131 DDKKRAMYDQYG 142
           +++ +  YD   
Sbjct: 77  NEETKKKYDLQR 88

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 76

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 82.0 bits (202), Expect = 4e-20
 Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 8/70 (11%)

Query: 78  DYYATLGVPKSAS--GKEIKAAYRKLARQYHPDVNKEPGATEK------FKEISAAYEVL 129
           DY+   G+P       + +   ++ L RQYHPD        E+         I+ A++ L
Sbjct: 2   DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTL 61

Query: 130 SDDKKRAMYD 139
                RA Y 
Sbjct: 62  RHPLMRAEYL 71

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.6 bits (201), Expect = 7e-20
 Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 5/74 (6%)

Query: 78  DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE--PGATEKFKEISAAYEVLSDDKKR 135
           +  + +         E K   R+L  ++HPD N E    A E FK +      L   +K+
Sbjct: 17  EVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRL---EKQ 73

Query: 136 AMYDQYGEAGVKST 149
           A  DQ  +   + T
Sbjct: 74  AFLDQNADRASRRT 87

>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]} Length = 79

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Cysteine-rich domain of the chaperone protein DnaJ
species: Escherichia coli [TaxId: 562]

 Score = 80.9 bits (199), Expect = 1e-19
 Identities = 34/81 (41%), Positives = 44/81 (54%), Gaps = 4/81 (4%)

Query: 212 GAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSC 271
           G  KE  +  LE C+VC G+GAK G++ + C TC G GQV        G F+    CP C
Sbjct: 1   GVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQM----RQGFFAVQQTCPHC 56

Query: 272 GGEGEVISEYCRKCSGEGRIR 292
            G G +I + C KC G GR+ 
Sbjct: 57  QGRGTLIKDPCNKCHGHGRVE 77

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} Length = 98

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 80.8 bits (199), Expect = 2e-19
 Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 4/71 (5%)

Query: 72  VVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGA----TEKFKEISAAYE 127
           V+ A    +  +G+    + +++K  YRK     HPD              F E++ A+ 
Sbjct: 28  VLWAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWS 87

Query: 128 VLSDDKKRAMY 138
              +  ++ +Y
Sbjct: 88  EFENQGQKPLY 98

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]} Length = 79

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

 Score = 78.1 bits (192), Expect = 1e-18
 Identities = 11/67 (16%), Positives = 26/67 (38%), Gaps = 5/67 (7%)

Query: 78  DYYATLGVPKSASG--KEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKR 135
                L +P+   G    ++ AY++ +   HPD     G+    +E+++ +     +   
Sbjct: 12  RLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKG---GSHALMQELNSLWGTFKTEVYN 68

Query: 136 AMYDQYG 142
              +  G
Sbjct: 69  LRMNLGG 75

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]} Length = 114

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

 Score = 77.9 bits (191), Expect = 3e-18
 Identities = 22/103 (21%), Positives = 41/103 (39%), Gaps = 13/103 (12%)

Query: 78  DYYATLGVPKSASG--KEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKR 135
                LG+ +SA G    ++ AY K  +++HPD   +    EK K+++  Y+ + D  K 
Sbjct: 9   QLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDE---EKMKKMNTLYKKMEDGVKY 65

Query: 136 AMYDQYGEAGVKSTVGGGSSAYTTNPF------DLF--ETFFG 170
           A    +G     + +    +      +      +LF  E    
Sbjct: 66  AHQPDFGGFWDATEIPTYGTDEWEQWWNAFNEENLFCSEEMPS 108

>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 74

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 75.1 bits (184), Expect = 1e-17
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 3/71 (4%)

Query: 224 TCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEY-- 281
            C+ C G G K G+  + C++C G+G    T Q    +    + C  C G G++I     
Sbjct: 4   LCKECEGRGGKKGAVKK-CTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDPKDR 62

Query: 282 CRKCSGEGRIR 292
           C+ C+G+    
Sbjct: 63  CKSCNGKKVEN 73

>d1m1qa_ a.138.1.3 (A:) Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain {Shewanella oneidensis [TaxId: 70863]} Length = 90

class: All alpha proteins
fold: Multiheme cytochromes
superfamily: Multiheme cytochromes
family: Di-heme elbow motif
domain: Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain
species: Shewanella oneidensis [TaxId: 70863]

 Score = 72.9 bits (178), Expect = 9e-17
 Identities = 16/84 (19%), Positives = 25/84 (29%), Gaps = 5/84 (5%)

Query: 214 EKEFELSH--LETCEVCTGTG---AKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVC 268
           +++    H     CE C   G   A    +   C +C G+   M     P       + C
Sbjct: 1   DQKLSDFHAESGGCESCHKDGTPSADGAFEFAQCQSCHGKLSEMDAVHKPHDGNLVCADC 60

Query: 269 PSCGGEGEVISEYCRKCSGEGRIR 292
            +           C  C  +GR  
Sbjct: 61  HAVHDMNVGQKPTCESCHDDGRTS 84

>d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 80

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.8 bits (155), Expect = 1e-13
 Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 3/69 (4%)

Query: 271 CGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLY 330
             G+ +      +   G      K  I +++ PG   G+ +    +GD  P+ G    L 
Sbjct: 15  FVGKKKSFKIGRKGPHGASE---KTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQ 71

Query: 331 VYLDVEEIP 339
             +  +  P
Sbjct: 72  FVIQEKSHP 80

>d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 80

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.9 bits (80), Expect = 0.002
 Identities = 11/76 (14%), Positives = 25/76 (32%), Gaps = 10/76 (13%)

Query: 347 DLFSTISISYLDAIMGTVVKVK---------TVEGISELQVPPGTQPGDVLVLAKKGAPK 397
            +   + +S  D  +G     K         + +   ++Q+ PG + G  +    +G   
Sbjct: 2   TVQVNLPVSLEDLFVGKKKSFKIGRKGPHGASEKTQIDIQLKPGWKAGTKITYKNQGDYN 61

Query: 398 LNKPSIRGDHLFTVKV 413
                 R    F ++ 
Sbjct: 62  PQT-GRRKTLQFVIQE 76

>d1c3ga2 b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 90

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.0 bits (145), Expect = 4e-12
 Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 1/79 (1%)

Query: 342 QRDGIDLFSTISISYLDAIMGTVVKVKTVEGIS-ELQVPPGTQPGDVLVLAKKGAPKLNK 400
           +RDG DL  T+ +S+ ++++G    ++T++G +  L      QP        +G P    
Sbjct: 3   KRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRVQPVQPSQTSTYPGQGMPTPKN 62

Query: 401 PSIRGDHLFTVKVTIPNRI 419
           PS RG+ +   KV  P  +
Sbjct: 63  PSQRGNLIVKYKVDYPISL 81

>d1nlta2 b.4.1.1 (A:258-337) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 80

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.4 bits (141), Expect = 9e-12
 Identities = 20/78 (25%), Positives = 28/78 (35%), Gaps = 4/78 (5%)

Query: 342 QRDGIDLFSTISISYLDAIMGTVVKVKTVEGI---SELQVPPGTQPGDVLVLAKKGAPKL 398
           +RDG DL     I  L AI G    ++ V G      +       PG   V+  KG P  
Sbjct: 3   KRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIP 62

Query: 399 NKPSIRGDHLFTVKVTIP 416
                 G+ +    +  P
Sbjct: 63  KYGG-YGNLIIKFTIKDP 79

>d1nlta2 b.4.1.1 (A:258-337) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 80

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.4 bits (84), Expect = 6e-04
 Identities = 10/66 (15%), Positives = 22/66 (33%), Gaps = 10/66 (15%)

Query: 271 CGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLY 330
            GGE  +                   + +     ++ G    + G+G   P+ G  G+L 
Sbjct: 22  AGGEFALEHVSGDWL----------KVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLI 71

Query: 331 VYLDVE 336
           +   ++
Sbjct: 72  IKFTIK 77

>d1nlta1 b.4.1.1 (A:110-138,A:213-257) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 74

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.0 bits (111), Expect = 1e-07
 Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 2/71 (2%)

Query: 343 RDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLAKKGAPKLNKPS 402
           + G D+   IS S  +   G   K+     I E+ V PG + G  +V   +     +   
Sbjct: 2   QRGKDIKHEISASLEELYKGRTAKLALNRKILEVHVEPGMKDGQRIVFKGEADQAPDV-- 59

Query: 403 IRGDHLFTVKV 413
           I GD +F V  
Sbjct: 60  IPGDVVFIVSE 70

>d1nlta1 b.4.1.1 (A:110-138,A:213-257) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 74

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.2 bits (101), Expect = 2e-06
 Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 295 KNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEE 337
           K ++V V PG+  G  +   GE D  P    PGD+   +    
Sbjct: 31  KILEVHVEPGMKDGQRIVFKGEADQAP-DVIPGDVVFIVSERP 72

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	446
d1c3ga2	90	Heat shock protein 40 Sis1 {Baker's yeast (Sacchar	99.91
d1xbla_	75	DnaJ chaperone, N-terminal (J) domain {Escherichia	99.88
d1hdja_	77	HSP40 {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1nlta2	80	Mitochondrial protein import protein mas5 (Hsp40,	99.82
d1wjza_	94	CSL-type zinc finger-containing protein 3 (J-domai	99.76
d1gh6a_	114	Large T antigen, the N-terminal J domain {Simian v	99.75
d1fafa_	79	Large T antigen, the N-terminal J domain {Murine p	99.67
d1c3ga1	80	Heat shock protein 40 Sis1 {Baker's yeast (Sacchar	99.64
d1fpoa1	76	HSC20 (HSCB), N-terminal (J) domain {Escherichia c	99.64
d1nlta1	74	Mitochondrial protein import protein mas5 (Hsp40,	99.6
d1nz6a_	98	Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}	99.58
d1exka_	79	Cysteine-rich domain of the chaperone protein DnaJ	99.57
d1iura_	88	Hypothetical protein KIAA0730 {Human (Homo sapiens	99.57
d1nlta3	74	Mitochondrial protein import protein mas5 (Hsp40,	99.4
d1nlta1	74	Mitochondrial protein import protein mas5 (Hsp40,	99.33
d1c3ga2	90	Heat shock protein 40 Sis1 {Baker's yeast (Sacchar	98.98
d1nlta2	80	Mitochondrial protein import protein mas5 (Hsp40,	98.94
d1c3ga1	80	Heat shock protein 40 Sis1 {Baker's yeast (Sacchar	98.69
d1exka_	79	Cysteine-rich domain of the chaperone protein DnaJ	97.93
d1nlta3	74	Mitochondrial protein import protein mas5 (Hsp40,	97.68
d1m1qa_	90	Flavocytochrome c3 (respiratory fumarate reductase	96.79
d1m1qa_	90	Flavocytochrome c3 (respiratory fumarate reductase	84.07

>d1c3ga2 b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=2.6e-25  Score=178.33  Aligned_cols=89  Identities=25%  Similarity=0.442  Sum_probs=84.6

Q ss_pred             CcccCCcceEEEEeecHHHHhCCCEEEEeccCCe-EEEEeCCCCCCCcEEEEccCCCCCCCCCCCCCCEEEEEEEEcCCC
Q 013277          340 GIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGI-SELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNR  418 (446)
Q Consensus       340 ~f~R~g~dL~~~~~Isl~eAl~G~~~~i~~ldG~-~~l~i~~~~~~g~~~~l~g~G~P~~~~~~~~GdL~v~~~v~~P~~  418 (446)
                      .|+|+|+||+++++|++.||++|++++|+|+||+ +.|++|+++++|++++|+|+|||..++++.+|||||+|+|.+|++
T Consensus         1 ~F~R~G~DL~~~~~I~~~eal~G~~~~i~~~dG~~i~i~ip~~~~~g~~~~i~g~G~p~~~~~~~rGdL~V~~~v~~P~~   80 (90)
T d1c3ga2           1 NFKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRVQPVQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKVDYPIS   80 (90)
T ss_dssp             SEEEETTEEEEEECCBHHHHHHCEEEEEECSSSCEEEEEESSCCCTTCEEECTTCSCBCSSCTTSBCCEEEEECCBCCSS
T ss_pred             CCeEeCCeEEEEEEeCHHHHhcCCeEEEecccccceecccccccccccccccCCCCCCcCCCCCCcCCEEEEEEEEcCCC
Confidence            4999999999999999999999999999999996 589999999999999999999999877778999999999999999


Q ss_pred             CCcchHHHHH
Q 013277          419 IRYVYSPSLT  428 (446)
Q Consensus       419 ls~~~~~~l~  428 (446)
                      ||++|+++|+
T Consensus        81 ls~~qk~~lE   90 (90)
T d1c3ga2          81 LNDAQKRAID   90 (90)
T ss_dssp             CCTTHHHHTC
T ss_pred             CCHHHHHhhC
Confidence            9999999874

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=3.3e-23  Score=160.08  Aligned_cols=72  Identities=56%  Similarity=0.916  Sum_probs=66.8

Q ss_pred             CcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhcchhhhhhhhhhcccccee
Q 013277           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVK  147 (446)
Q Consensus        76 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~  147 (446)
                      .+|||+||||+++||.+|||+|||+++++||||++++ +.+.+.|.+|++||+||+||.+|+.||+||..++.
T Consensus         2 k~dyY~vLgv~~~As~~eIk~aYr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~~~e   74 (75)
T d1xbla_           2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFE   74 (75)
T ss_dssp             CCCTTTTTCCSSSCCHHHHHHHHHHHHHHTCCTTCTTTCHHHHHHHHHHHHHHHTTSSHHHHHHHHHTTSSCC
T ss_pred             CCCHHHHcCCCCCcCHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHhCccccC
Confidence            5799999999999999999999999999999999875 56778899999999999999999999999987653

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=4.1e-23  Score=160.52  Aligned_cols=74  Identities=61%  Similarity=1.030  Sum_probs=70.5

Q ss_pred             cCcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhhhhccccceee
Q 013277           75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKS  148 (446)
Q Consensus        75 ~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~~~~  148 (446)
                      |.+|||+||||+++|+.+|||+||+++++++|||++.++.+.++|+.|++||+||+||.+|+.||+||.+++++
T Consensus         1 m~kdyY~iLgv~~~as~~eIk~ay~~l~~~~hPD~~~~~~~~~~~~~i~~Ay~vLsdp~~R~~YD~~g~~~~~g   74 (77)
T d1hdja_           1 MGKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGLKG   74 (77)
T ss_dssp             CCCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGCCS
T ss_pred             CCCChHHHcCCCCCcCHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcC
Confidence            56899999999999999999999999999999999999999999999999999999999999999999988753

>d1nlta2 b.4.1.1 (A:258-337) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.82  E-value=6.7e-21  Score=149.04  Aligned_cols=77  Identities=29%  Similarity=0.428  Sum_probs=71.3

Q ss_pred             CcccCCcceEEEEeecHHHHhCCCEEEEeccCCe-EEEEeCCC--CCCCcEEEEccCCCCCCCCCCCCCCEEEEEEEEcC
Q 013277          340 GIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGI-SELQVPPG--TQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIP  416 (446)
Q Consensus       340 ~f~R~g~dL~~~~~Isl~eAl~G~~~~i~~ldG~-~~l~i~~~--~~~g~~~~l~g~G~P~~~~~~~~GdL~v~~~v~~P  416 (446)
                      .|+|+|+||+++++|++.||++|++++|+|+||. ++++||++  +++|++++|+|+|||..++ +.+|||||+|+|++|
T Consensus         1 tF~R~G~dL~~~~~I~~~eal~G~~~~i~~~dg~~~~i~i~~~~~~~~g~~~~i~g~G~p~~~~-~~~GDL~v~~~V~~P   79 (80)
T d1nlta2           1 SFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKY-GGYGNLIIKFTIKDP   79 (80)
T ss_dssp             SCEEETTEEEEEEEEEHHHHHHCBCCEEECSSSCEEECCBCTTTTCSTTCEEEETTCSCBCSSS-CSBCCEEEEEEEECC
T ss_pred             CcEEeCCEEEEEEEeCHHHHhCCCEEEEEecCcceEEEEeCCCCCcCCCCEEEecCCCCCCCCc-CCcCcEEEEEEEEcC
Confidence            4999999999999999999999999999999997 46788876  8999999999999999875 568999999999999


Q ss_pred             C
Q 013277          417 N  417 (446)
Q Consensus       417 ~  417 (446)
                      +
T Consensus        80 k   80 (80)
T d1nlta2          80 E   80 (80)
T ss_dssp             C
T ss_pred             C
Confidence            6

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.76  E-value=7.5e-20  Score=147.13  Aligned_cols=69  Identities=32%  Similarity=0.569  Sum_probs=62.5

Q ss_pred             ccCcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-------chHHHHHHHHHHHhhcchhhhhhhhhhcc
Q 013277           74 CASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEP-------GATEKFKEISAAYEVLSDDKKRAMYDQYG  142 (446)
Q Consensus        74 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-------~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g  142 (446)
                      .+.+|||+||||+++|+.+|||+||++|+++||||+++..       .+.++|+.|++||+||+||.+|+.||...
T Consensus        13 ~~~~d~Y~iLgv~~~as~~eIk~aY~~l~~~~HPDk~~~~~~~~~~~~a~~~f~~I~~Ay~vL~d~~~R~~YD~~~   88 (94)
T d1wjza_          13 TLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQR   88 (94)
T ss_dssp             SSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHS
T ss_pred             hhccChHHHcCCCCCcCHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHcc
Confidence            3457999999999999999999999999999999998642       36788999999999999999999999864

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

Probab=99.75  E-value=7.1e-20  Score=152.77  Aligned_cols=67  Identities=28%  Similarity=0.427  Sum_probs=61.1

Q ss_pred             CcCchhhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhhhhccccc
Q 013277           76 SGDYYATLGVPKSA--SGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAG  145 (446)
Q Consensus        76 ~~d~Y~iLgv~~~a--s~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~~~  145 (446)
                      ..|||+||||+++|  +.++||+|||+||++||||+++++   ++|++|++||+||+||.+|+.||.++...
T Consensus         7 ~~~ly~iLGv~~~a~~~~~~IKkAYrkla~k~HPDk~~~~---e~F~~I~~AY~vLsd~~kR~~YD~~~~~~   75 (114)
T d1gh6a_           7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDE---EKMKKMNTLYKKMEDGVKYAHQPDFGGFW   75 (114)
T ss_dssp             HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCTT---TTTHHHHHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhcccchhhH---HHHHHHHHHHHHhCCHHHHHHHhccCCCC
Confidence            46899999999999  788999999999999999999654   57999999999999999999999987654

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

Probab=99.67  E-value=1.1e-17  Score=129.32  Aligned_cols=64  Identities=14%  Similarity=0.261  Sum_probs=58.5

Q ss_pred             CcCchhhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhhhhcc
Q 013277           76 SGDYYATLGVPKSA--SGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYG  142 (446)
Q Consensus        76 ~~d~Y~iLgv~~~a--s~~eIk~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g  142 (446)
                      ..+||+||||++++  +.+|||+|||++++++|||++.   ..++|++|++||++|+|+.+|..||..+
T Consensus        10 ~~~~y~iLgl~~~~~~~~~~IkkaYr~l~~~~HPDk~g---~~e~~~~in~Ay~~L~d~~~r~~~~~~~   75 (79)
T d1fafa_          10 KERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGG---SHALMQELNSLWGTFKTEVYNLRMNLGG   75 (79)
T ss_dssp             HHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSC---CHHHHHHHHHHHHHHHHHHHHHTTCCSS
T ss_pred             HHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCcccCC---CHHHHHHHHHHHHHHCCHHHHHHHccCC
Confidence            45899999999988  8999999999999999999984   4578999999999999999999999743

>d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.64  E-value=1.1e-16  Score=124.71  Aligned_cols=80  Identities=20%  Similarity=0.410  Sum_probs=67.4

Q ss_pred             CceeEeeeeecccccccceeeeeccceeecccccCCccccCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcc
Q 013277          196 EDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEG  275 (446)
Q Consensus       196 ~di~~~l~ltlee~~~G~~k~~~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G  275 (446)
                      ++++++|.|||||+|+|+++++.+.+.    .|+|                 .+                          
T Consensus         1 e~v~~~l~vtLee~~~G~~k~i~~~r~----~~~g-----------------~~--------------------------   33 (80)
T d1c3ga1           1 ETVQVNLPVSLEDLFVGKKKSFKIGRK----GPHG-----------------AS--------------------------   33 (80)
T ss_dssp             CEEEEEEEECHHHHHHTCEEEEEEEEE----ETTT-----------------EE--------------------------
T ss_pred             CCEEEEeEEEHHHHhCCCceEeeccee----cccC-----------------CC--------------------------
Confidence            378999999999999999999876532    2222                 11                          


Q ss_pred             eEeceeeeecCCceEEEEeeEEEEEeCCCCCCCCEEEEccCCCCCCCCCCCccEEEEEEEEecc
Q 013277          276 EVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIP  339 (446)
Q Consensus       276 ~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~~~  339 (446)
                                       +.++++|.||||+++|++|+|+|+|++.++++.+|||+|+|++++||
T Consensus        34 -----------------~~~~~~v~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~~~i~~~~HP   80 (80)
T d1c3ga1          34 -----------------EKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHP   80 (80)
T ss_dssp             -----------------EEEEEEEECCTTCCTTCEEEESSCSSBCSSSSCBCEEEEEEEECCCS
T ss_pred             -----------------ceEEEEEEECCCCCCCcEEEECCccccCcCCCCCCCEEEEEEeCCCC
Confidence                             24679999999999999999999999988778899999999999997

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.64  E-value=6.5e-17  Score=124.73  Aligned_cols=64  Identities=28%  Similarity=0.482  Sum_probs=56.5

Q ss_pred             cCchhhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCc------chHHHHHHHHHHHhhcchhhhhhhhhh
Q 013277           77 GDYYATLGVPKS--ASGKEIKAAYRKLARQYHPDVNKEP------GATEKFKEISAAYEVLSDDKKRAMYDQ  140 (446)
Q Consensus        77 ~d~Y~iLgv~~~--as~~eIk~ayr~l~~~~HPD~~~~~------~~~~~f~~i~~Ay~vL~d~~~r~~yd~  140 (446)
                      .|||++|||+++  ++.+|||+|||++++++|||++...      .+.+.|+.|++||+||+||.+|+.|+.
T Consensus         1 lnyy~lLgl~~~~~~d~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~a~~~~~~i~~Ay~vL~dp~~R~~Yll   72 (76)
T d1fpoa1           1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLL   72 (76)
T ss_dssp             CHHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred             CChHHHCCCCCCCCCCHHHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            389999999985  4589999999999999999997642      256789999999999999999999985

>d1nlta1 b.4.1.1 (A:110-138,A:213-257) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.60  E-value=1.2e-15  Score=116.89  Aligned_cols=73  Identities=26%  Similarity=0.476  Sum_probs=64.9

Q ss_pred             ccCCceeEeeeeecccccccceeeeeccceeecccccCCccccCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCC
Q 013277          193 TKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCG  272 (446)
Q Consensus       193 ~~g~di~~~l~ltlee~~~G~~k~~~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~  272 (446)
                      +++.|++++|.|||+|+|.|+++++.+.                                                    
T Consensus         2 rkg~di~~~l~isleea~~G~~~~~~~~----------------------------------------------------   29 (74)
T d1nlta1           2 QRGKDIKHEISASLEELYKGRTAKLALN----------------------------------------------------   29 (74)
T ss_dssp             CBCCCEEEEEEECTTHHHHCEEEEEEEE----------------------------------------------------
T ss_pred             CCCCCEEEEEEecHHHHHhhcccceeec----------------------------------------------------
Confidence            4688999999999999999998876532                                                    


Q ss_pred             CcceEeceeeeecCCceEEEEeeEEEEEeCCCCCCCCEEEEccCCCCCCCCCCCccEEEEEEEEecc
Q 013277          273 GEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIP  339 (446)
Q Consensus       273 G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~~~  339 (446)
                                           .+.++|+||+|+++|++|+|+|+|++.+ ++.+|||+|+|++++|.
T Consensus        30 ---------------------~~~~~i~Ip~G~~~G~~ir~~g~G~~~~-~~~~GDl~v~i~~~pHk   74 (74)
T d1nlta1          30 ---------------------RKILEVHVEPGMKDGQRIVFKGEADQAP-DVIPGDVVFIVSERPHK   74 (74)
T ss_dssp             ---------------------EEEEEEEECTTCCTTCEEEETTCSCCCT-TCBCCCEEEEEEECCCS
T ss_pred             ---------------------CccEEEEecccccCCeEEEecCCcCCCC-CCCCCCEEEEEEecCCC
Confidence                                 3578999999999999999999999986 56799999999999984

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.58  E-value=1.6e-16  Score=128.19  Aligned_cols=65  Identities=22%  Similarity=0.406  Sum_probs=59.2

Q ss_pred             ccCcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcc----hHHHHHHHHHHHhhcchhhhhhhh
Q 013277           74 CASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPG----ATEKFKEISAAYEVLSDDKKRAMY  138 (446)
Q Consensus        74 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~----~~~~f~~i~~Ay~vL~d~~~r~~y  138 (446)
                      +...+.|++||+...++.+|||+|||++++.+|||+++++.    +.+.|+.|++||++|+||.+|+.|
T Consensus        30 ~~~~~~y~~Lgl~~~~t~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~I~~Ay~~L~d~~~R~~Y   98 (98)
T d1nz6a_          30 WAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY   98 (98)
T ss_dssp             CTTCCSCCCCCGGGCCSHHHHHHHHHHHHHHSCHHHHTTSTTHHHHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred             CCcccCCeecCCCccCCHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHCCHHHHhcC
Confidence            44567899999999999999999999999999999987643    678899999999999999999987

>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Cysteine-rich domain of the chaperone protein DnaJ
species: Escherichia coli [TaxId: 562]

Probab=99.57  E-value=1.4e-15  Score=117.82  Aligned_cols=78  Identities=44%  Similarity=0.963  Sum_probs=69.8

Q ss_pred             cceeeeeccceeecccccCCccccCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeecCCceEE
Q 013277          212 GAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRI  291 (446)
Q Consensus       212 G~~k~~~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v  291 (446)
                      |++++|.|++.+.|+.|+|+|++.+....+|+.|+|+|++..    ..|++++..+|+.|+|+|+++.++|..|+|.|.+
T Consensus         1 G~~k~i~i~~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~v~~----~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v   76 (79)
T d1exka_           1 GVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQM----RQGFFAVQQTCPHCQGRGTLIKDPCNKCHGHGRV   76 (79)
T ss_dssp             CTTTSCCCCCEEECGGGTTTSBCSSSCCEECTTTTTSSEEEE----EETTEEEEEECTTTTTSSEECSSBCGGGTTSSEE
T ss_pred             CceEEEEeeeeccCCCCcCcccCCCccceeCCCccceeEEEE----ecccceeeEECcccCcceeECCCCCCCCCCceEe
Confidence            678899999999999999999998888899999999998754    2467777789999999999999999999999987


Q ss_pred             EE
Q 013277          292 RL  293 (446)
Q Consensus       292 ~~  293 (446)
                      .+
T Consensus        77 ~k   78 (79)
T d1exka_          77 ER   78 (79)
T ss_dssp             EC
T ss_pred             ec
Confidence            64

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=2.4e-16  Score=124.30  Aligned_cols=65  Identities=26%  Similarity=0.317  Sum_probs=57.1

Q ss_pred             CcCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--cchHHHHHHHHHHHhhcchhhhhhhhhhccc
Q 013277           76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE--PGATEKFKEISAAYEVLSDDKKRAMYDQYGE  143 (446)
Q Consensus        76 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~--~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~g~  143 (446)
                      -+|+|+||+|+.+|+.+|||+|||+|+++||||++++  +.+.++|++|++||++|++   +..||++..
T Consensus        15 ~~~~y~iL~v~~~as~~eIKkAYrrl~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~~---~~~~d~~~~   81 (88)
T d1iura_          15 LKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEK---QAFLDQNAD   81 (88)
T ss_dssp             HHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHH---HTTCSSSSS
T ss_pred             HHHHHHHhCCCCCCCHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHH---HHHhhccch
Confidence            3699999999999999999999999999999999975  3578999999999999975   566776553

>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.40  E-value=1.5e-13  Score=104.77  Aligned_cols=72  Identities=28%  Similarity=0.652  Sum_probs=62.7

Q ss_pred             ceeecccccCCccccCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEec--eeeeecCCceEEEE
Q 013277          221 HLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVIS--EYCRKCSGEGRIRL  293 (446)
Q Consensus       221 ~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~--~~C~~C~G~G~v~~  293 (446)
                      +.+.|+.|+|+|..... ..+|+.|+|+|+++...+++++++++..+|+.|+|+|+++.  ++|..|+|.|.+++
T Consensus         1 r~v~C~~C~G~G~~~~~-~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~~~~~C~~C~G~g~v~E   74 (74)
T d1nlta3           1 KQILCKECEGRGGKKGA-VKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVENE   74 (74)
T ss_dssp             EEEECTTTTTCSBSTTT-CCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCCTTSBCSSSTTSCEEEE
T ss_pred             CccCCcCCcccccCCCC-CCCCCCCcceeeeeEEEEecCcEEEEEEECccCccceEEeCCCCCCCCCCCeeEeCC
Confidence            46789999999998765 57899999999999888888877777789999999998874  68999999998764

>d1nlta1 b.4.1.1 (A:110-138,A:213-257) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.33  E-value=1.1e-12  Score=100.06  Aligned_cols=70  Identities=27%  Similarity=0.384  Sum_probs=64.2

Q ss_pred             cCCcceEEEEeecHHHHhCCCEEEEeccCCeEEEEeCCCCCCCcEEEEccCCCCCCCCCCCCCCEEEEEEEE
Q 013277          343 RDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVT  414 (446)
Q Consensus       343 R~g~dL~~~~~Isl~eAl~G~~~~i~~ldG~~~l~i~~~~~~g~~~~l~g~G~P~~~~~~~~GdL~v~~~v~  414 (446)
                      |+|.|++++++|||.||++|.++.|.+..+.++|+||+|+++|++++++|+|.+..+  +.+|||+|++++.
T Consensus         2 rkg~di~~~l~isleea~~G~~~~~~~~~~~~~i~Ip~G~~~G~~ir~~g~G~~~~~--~~~GDl~v~i~~~   71 (74)
T d1nlta1           2 QRGKDIKHEISASLEELYKGRTAKLALNRKILEVHVEPGMKDGQRIVFKGEADQAPD--VIPGDVVFIVSER   71 (74)
T ss_dssp             CBCCCEEEEEEECTTHHHHCEEEEEEEEEEEEEEEECTTCCTTCEEEETTCSCCCTT--CBCCCEEEEEEEC
T ss_pred             CCCCCEEEEEEecHHHHHhhcccceeecCccEEEEecccccCCeEEEecCCcCCCCC--CCCCCEEEEEEec
Confidence            689999999999999999999999998777889999999999999999999998754  4579999999875

>d1c3ga2 b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.98  E-value=1.2e-10  Score=91.96  Aligned_cols=84  Identities=21%  Similarity=0.314  Sum_probs=69.2

Q ss_pred             ccCCceeEeeeeecccccccceeeeeccceeecccccCCccccCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCC
Q 013277          193 TKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCG  272 (446)
Q Consensus       193 ~~g~di~~~l~ltlee~~~G~~k~~~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~  272 (446)
                      ++|.|+.+++.|+|.||+.|+++++..-                                                    
T Consensus         4 R~G~DL~~~~~I~~~eal~G~~~~i~~~----------------------------------------------------   31 (90)
T d1c3ga2           4 RDGDDLIYTLPLSFKESLLGFSKTIQTI----------------------------------------------------   31 (90)
T ss_dssp             EETTEEEEEECCBHHHHHHCEEEEEECS----------------------------------------------------
T ss_pred             EeCCeEEEEEEeCHHHHhcCCeEEEecc----------------------------------------------------
Confidence            3578999999999999999998776511                                                    


Q ss_pred             CcceEeceeeeecCCceEEEEeeEEEEEeCCCCCCCCEEEEccCCCCCCC-CCCCccEEEEEEEEeccCcccCCcce
Q 013277          273 GEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPR-GGPPGDLYVYLDVEEIPGIQRDGIDL  348 (446)
Q Consensus       273 G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~-g~~~GDL~v~i~v~~~~~f~R~g~dL  348 (446)
                                          +.+.++|+||+|+++|++++++|+|++... .+..|||+|+++|..|..++.++.++
T Consensus        32 --------------------dG~~i~i~ip~~~~~g~~~~i~g~G~p~~~~~~~rGdL~V~~~v~~P~~ls~~qk~~   88 (90)
T d1c3ga2          32 --------------------DGRTLPLSRVQPVQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKVDYPISLNDAQKRA   88 (90)
T ss_dssp             --------------------SSCEEEEEESSCCCTTCEEECTTCSCBCSSCTTSBCCEEEEECCBCCSSCCTTHHHH
T ss_pred             --------------------cccceecccccccccccccccCCCCCCcCCCCCCcCCEEEEEEEEcCCCCCHHHHHh
Confidence                                135788999999999999999999998653 45689999999999888777665443

>d1nlta2 b.4.1.1 (A:258-337) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.94  E-value=6.2e-10  Score=85.66  Aligned_cols=74  Identities=26%  Similarity=0.447  Sum_probs=62.0

Q ss_pred             ccCCceeEeeeeecccccccceeeeeccceeecccccCCccccCcceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCC
Q 013277          193 TKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCG  272 (446)
Q Consensus       193 ~~g~di~~~l~ltlee~~~G~~k~~~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~  272 (446)
                      +.|.|+.+++.|+|.||+.|+++.+..-                                                    
T Consensus         4 R~G~dL~~~~~I~~~eal~G~~~~i~~~----------------------------------------------------   31 (80)
T d1nlta2           4 RDGDDLVYEAEIDLLTAIAGGEFALEHV----------------------------------------------------   31 (80)
T ss_dssp             EETTEEEEEEEEEHHHHHHCBCCEEECS----------------------------------------------------
T ss_pred             EeCCEEEEEEEeCHHHHhCCCEEEEEec----------------------------------------------------
Confidence            3578999999999999999998776521                                                    


Q ss_pred             CcceEeceeeeecCCceEEEEeeEEEEEeCCC--CCCCCEEEEccCCCCCCCCCCCccEEEEEEEEec
Q 013277          273 GEGEVISEYCRKCSGEGRIRLKKNIKVKVPPG--VSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEI  338 (446)
Q Consensus       273 G~G~~~~~~C~~C~G~G~v~~~~~l~V~Ip~G--~~~G~~i~l~g~G~~~~~g~~~GDL~v~i~v~~~  338 (446)
                                          +.+.++|+||++  +++|++++++|+|++..+++..|||||+++|+.|
T Consensus        32 --------------------dg~~~~i~i~~~~~~~~g~~~~i~g~G~p~~~~~~~GDL~v~~~V~~P   79 (80)
T d1nlta2          32 --------------------SGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTIKDP   79 (80)
T ss_dssp             --------------------SSCEEECCBCTTTTCSTTCEEEETTCSCBCSSSCSBCCEEEEEEEECC
T ss_pred             --------------------CcceEEEEeCCCCCcCCCCEEEecCCCCCCCCcCCcCcEEEEEEEEcC
Confidence                                024567778877  9999999999999998877789999999999865

>d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.69  E-value=2.2e-08  Score=76.69  Aligned_cols=68  Identities=18%  Similarity=0.285  Sum_probs=56.6

Q ss_pred             cceEEEEeecHHHHhCCCEEEEe----ccCCe-----EEEEeCCCCCCCcEEEEccCCCCCCCCCCCCCCEEEEEEEE
Q 013277          346 IDLFSTISISYLDAIMGTVVKVK----TVEGI-----SELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVT  414 (446)
Q Consensus       346 ~dL~~~~~Isl~eAl~G~~~~i~----~ldG~-----~~l~i~~~~~~g~~~~l~g~G~P~~~~~~~~GdL~v~~~v~  414 (446)
                      +|+..++.|||.||+.|++.+|.    ..+|.     +.|.||+|+.+|++++++|+|....+. +.+|||+|.++++
T Consensus         1 e~v~~~l~vtLee~~~G~~k~i~~~r~~~~g~~~~~~~~v~Ip~G~~~G~~i~~~g~G~~~~~~-~~~GDl~~~i~~~   77 (80)
T d1c3ga1           1 ETVQVNLPVSLEDLFVGKKKSFKIGRKGPHGASEKTQIDIQLKPGWKAGTKITYKNQGDYNPQT-GRRKTLQFVIQEK   77 (80)
T ss_dssp             CEEEEEEEECHHHHHHTCEEEEEEEEEETTTEEEEEEEEEECCTTCCTTCEEEESSCSSBCSSS-SCBCEEEEEEEEC
T ss_pred             CCEEEEeEEEHHHHhCCCceEeecceecccCCCceEEEEEEECCCCCCCcEEEECCccccCcCC-CCCCCEEEEEEeC
Confidence            47889999999999999987664    34553     479999999999999999999876543 4579999999875

>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Cysteine-rich domain of the chaperone protein DnaJ
species: Escherichia coli [TaxId: 562]

Probab=97.93  E-value=1.8e-06  Score=65.51  Aligned_cols=47  Identities=32%  Similarity=0.798  Sum_probs=37.8

Q ss_pred             ceeecccccCCccccCc-----ceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEec
Q 013277          221 HLETCEVCTGTGAKMGS-----KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVIS  279 (446)
Q Consensus       221 ~~~~C~~C~G~G~~~~~-----~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~  279 (446)
                      ....|+.|+|+|.....     ...+|+.|+|+|+++.            .+|+.|+|+|++.+
T Consensus        27 ~~~~C~~C~G~G~v~~~~g~~~~~~~C~~C~G~G~~i~------------~~C~~C~G~G~v~k   78 (79)
T d1exka_          27 QPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLIK------------DPCNKCHGHGRVER   78 (79)
T ss_dssp             CCEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEECS------------SBCGGGTTSSEEEC
T ss_pred             cceeCCCccceeEEEEecccceeeEECcccCcceeECC------------CCCCCCCCceEeec
Confidence            35679999999975322     2668999999999864            68999999999864

>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.68  E-value=5.3e-06  Score=62.01  Aligned_cols=46  Identities=28%  Similarity=0.706  Sum_probs=35.8

Q ss_pred             eecccccCCccccCc---------ceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEe
Q 013277          223 ETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVI  278 (446)
Q Consensus       223 ~~C~~C~G~G~~~~~---------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~  278 (446)
                      ..|+.|+|+|.....         ...+|+.|+|+|+++...          .+|+.|+|.|.+.
T Consensus        19 ~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~~~----------~~C~~C~G~g~v~   73 (74)
T d1nlta3          19 KKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDPK----------DRCKSCNGKKVEN   73 (74)
T ss_dssp             CCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCCTT----------SBCSSSTTSCEEE
T ss_pred             CCCCCCcceeeeeEEEEecCcEEEEEEECccCccceEEeCCC----------CCCCCCCCeeEeC
Confidence            469999999975432         256899999999876422          5899999999764

>d1m1qa_ a.138.1.3 (A:) Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain {Shewanella oneidensis [TaxId: 70863]}

class: All alpha proteins
fold: Multiheme cytochromes
superfamily: Multiheme cytochromes
family: Di-heme elbow motif
domain: Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain
species: Shewanella oneidensis [TaxId: 70863]

Probab=96.79  E-value=1.1e-05  Score=62.48  Aligned_cols=68  Identities=21%  Similarity=0.441  Sum_probs=50.0

Q ss_pred             ecccccCCccccCc---ceeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEeceeeeecCCceEE
Q 013277          224 TCEVCTGTGAKMGS---KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRI  291 (446)
Q Consensus       224 ~C~~C~G~G~~~~~---~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~v  291 (446)
                      .|..|+|.|.....   ....|..|+|.|..........+....-..|..|+|.|..+.+.|..|++.|+.
T Consensus        13 ~C~~CH~~~~~~~~~~~~~~~C~~CHg~~~~~~~~~~~h~~~~~c~~CH~~H~~~~~~~~~C~~CH~~gr~   83 (90)
T d1m1qa_          13 GCESCHKDGTPSADGAFEFAQCQSCHGKLSEMDAVHKPHDGNLVCADCHAVHDMNVGQKPTCESCHDDGRT   83 (90)
T ss_dssp             CGGGTSGGGCCCSSSHHHHHHHHHHHCCGGGSCTTTGGGTTTCCGGGTCCTTTSBTTCCCCSTTTCSSCCC
T ss_pred             CCCCcCCCCccccCCCCCCCcCcccCCCceeEeeccccccCccccccCccccCCCCcCCCccccccCCCcc
Confidence            69999998865332   245799999998754333333333334478999999999999999999999865

>d1m1qa_ a.138.1.3 (A:) Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain {Shewanella oneidensis [TaxId: 70863]}

class: All alpha proteins
fold: Multiheme cytochromes
superfamily: Multiheme cytochromes
family: Di-heme elbow motif
domain: Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain
species: Shewanella oneidensis [TaxId: 70863]

Probab=84.07  E-value=0.074  Score=39.76  Aligned_cols=44  Identities=20%  Similarity=0.489  Sum_probs=30.6

Q ss_pred             eecccccCCccccCcc---------eeeCCCCCCccEEEEeeeCCceeeeeeecCCCCCCcceEe
Q 013277          223 ETCEVCTGTGAKMGSK---------MRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVI  278 (446)
Q Consensus       223 ~~C~~C~G~G~~~~~~---------~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~  278 (446)
                      ..|..|+|.|......         -..|..|+|.|..+.            ..|..|++.|++.
T Consensus        32 ~~C~~CHg~~~~~~~~~~~h~~~~~c~~CH~~H~~~~~~~------------~~C~~CH~~gr~~   84 (90)
T d1m1qa_          32 AQCQSCHGKLSEMDAVHKPHDGNLVCADCHAVHDMNVGQK------------PTCESCHDDGRTS   84 (90)
T ss_dssp             HHHHHHHCCGGGSCTTTGGGTTTCCGGGTCCTTTSBTTCC------------CCSTTTCSSCCCH
T ss_pred             CcCcccCCCceeEeeccccccCccccccCccccCCCCcCC------------CccccccCCCccc
Confidence            5699999998753221         346777777765432            6799999999753