Citrus Sinensis ID: 013278

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440------
MENALQRSPIISKLTCGVCYNVGGEDGDRLSNLPEPIIHHIFSFLETIDVVRASAVSRKWRYLWLSIPYLNFNVHNICSNPLERWSLQTTNEKFKDFVNWVLLFQNGSVNEPIKLPRSLVTCESLVSLKLDFGNREHQGVLNLPTCVGFSRLKSLDLQHVESLDISTTSLKYLTVDEFLLSEPKGLRSCKVICESLEALKLHFGREIDSSPLLENLKMDSCCFPDLKILDISSNSLKSLTLERIEFGGDELDNYKLKIACSNLESFNIFAPLLPDFTLESLNSLQNAFIFLETIGEYMEAKEICHRMSKILNGLRDVKVLKLSCTLYQFLNAILEQRSYFSASFNNLKSLILCVTTAEWTVPLIIRLLNHSPNLEVLTIYFDSDEYYDDWEIPDKVILCLTCHLKTVELIDFSGNENELELVRFLLKNGHVLQKLRVSWLERCGES
ccccccccccccccccccccccccccccccccccHHHHHHHHccccHHHHHHHHHHccccccccccccEEEEEEcccccccccHHHHcccHHHHHHHHHHHHHcccccccccccccccccccccccEEEEEEcccccccEEEcccccccccccEEEccccccEEEEcccccEEEEccccccccccccccEEEEEEccEEEcccccccccccccccEEEccccccccEEEEEEcccccEEEEEEEEEccccccccEEEEEccccEEEEEEccccccEEEEcccccEEEEEEEEEcccHHHHHHHHHHHHHHHcccccccEEEEEccHHHHHHHHHHHccccccccccEEEEEEEEEcccccHHHHHHHHHccccccEEEEEEEcccccccccccccccccccccEEEEEEEEEEccHHHHHHHHHHHHcccccccEEEEEccccccc
cccHccccccccccEEEEcccccccccccHccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccEEEEEEcccccHHHHHHHHHHHHHcccEEEEEEEEccccccccccEEcccEEEEEEEEEEEEEEccccccccHHccEEEEEEEEEccccHHHHHHHccccHHHEEEEEEccccccEEEEEEccccEEEEEEEcccccccccccEEEEEcccEEEEEEEccccccEEEEcccccEEEEEEEEcccccccccccHcHHHHHHHHHHcccEEEEccccHEHHHHHHcccccccccccccEEEEEEcccccHHHHHHHHHHHccccccEEEEEEcccccccccccccccccHccccEEEEEEEEccccHHHHHHHHHHHHccHHHEEEEEEEccccccc
menalqrspiiskltcgvcynvggedgdrlsnlpepiIHHIFSFLETIDVVRASAVSRKWRYLWLSIpylnfnvhnicsnplerwslqttNEKFKDFVNWVLLFQngsvnepiklprslvTCESLVSLKLdfgnrehqgvlnlptcvgfsrlksldlqhvesldisttslkyLTVDefllsepkglrsCKVICESLEALKLHfgreidsspllenlkmdsccfpdlkildissnslkSLTLERiefggdeldnyKLKIACsnlesfnifapllpdftLESLNSLQNAFIFLETIGEYMEAKEICHRMSKILNGLRDVKVLKLSCTLYQFLNAILEQRSYFSASFNNLKSLILCVTTAEWTVPLIIRLLnhspnlevltiyfdsdeyyddweipdKVILCLTCHLKTVELIDFSGNENELELVRFLLKNGHVLQKLRVSWLERCGES
menalqrspiiskltcGVCYNVGGEDGDRLSNLPEPIIHHIFSFLETIDVVRASAVSRKWRYLWLSIPYLNFNVHNICSNPLERWSLQTTNEKFKDFVNWVLLFQNGSVNEPIKLPRSLVTCESLVSLKLDFGNREHQGVLNLPTCVGFSRLKSLDLQHVESLdisttslkYLTVDEFLlsepkglrSCKVICESLEALKLHFGREIDSSPLLENLKMDSCCFPDLKILDISSNSLKSLTLERIEFGGDELDNYKLKIACSNLESFNIFAPLLPDFTLESLNSLQNAFIFLETIGEYMEAKEICHRMSKILNGLRDVKVLKLSCTLYQFLNAILEQRSYFSASFNNLKSLILCVTTAEWTVPLIIRllnhspnlEVLTIYFDSDEYYDDWEIPDKVILCLTCHLKTVELIDFSGNENELELVRFLLknghvlqklrvswlercges
MENALQRSPIISKLTCGVCYNVGGEDGDRLSNLPEPIIHHIFSFLETIDVVRASAVSRKWRYLWLSIPYLNFNVHNICSNPLERWSLQTTNEKFKDFVNWVLLFQNGSVNEPIKLPRSLVTCESLVSLKLDFGNREHQGVLNLPTCVGFSRLKSLDLQHVESLDISTTSLKYLTVDEFLLSEPKGLRSCKVICESLEALKLHFGREIDSSPLLENLKMDSCCFPDLKILDISSNSLKSLTLERIEFGGDELDNYKLKIACSNLESFNIFAPLLPDFTLESLNSLQNAFIFLETIGEYMEAKEICHRMSKILNGLRDVKVLKLSCTLYQFLNAILEQRSYFSASFNNLKSLILCVTTAEWTVPLIIRLLNHSPNLEVLTIYFDSDEYYDDWEIPDKVILCLTCHLKTVELIDFSGNENELELVRFLLKNGHVLQKLRVSWLERCGES
*********IISKLTCGVCYNVGGEDGDRLSNLPEPIIHHIFSFLETIDVVRASAVSRKWRYLWLSIPYLNFNVHNICSNPLERWSLQTTNEKFKDFVNWVLLFQNGSVNEPIKLPRSLVTCESLVSLKLDFGNREHQGVLNLPTCVGFSRLKSLDLQHVESLDISTTSLKYLTVDEFLLSEPKGLRSCKVICESLEALKLHFGREIDSSPLLENLKMDSCCFPDLKILDISSNSLKSLTLERIEFGGDELDNYKLKIACSNLESFNIFAPLLPDFTLESLNSLQNAFIFLETIGEYMEAKEICHRMSKILNGLRDVKVLKLSCTLYQFLNAILEQRSYFSASFNNLKSLILCVTTAEWTVPLIIRLLNHSPNLEVLTIYFDSDEYYDDWEIPDKVILCLTCHLKTVELIDFSGNENELELVRFLLKNGHVLQKLRVSWLER****
******************************SNLPEPIIHHIFSFLETIDVVRASAVSRKWRYLWLSIPYLNFNVHNICSNPLERWSLQTTNEKFKDFVNWVLLFQNGSVNEPIKLPRSLVTCESLVSLKLDFGNREHQGVLNLPTCVGFSRLKSLDLQHVESLDISTTSLKYLTVDEFLLSEPKGLRSCKVICESLEALKLHFGREIDSSPLLENLKMDSCCFPDLKILDISSNSLKSLTLERIEFGGDELDNYKLKIACSNLESFNIFAPLLPDFTLESLNSLQNAFIFLETIGEYMEAKEICHRMSKILNGLRDVKVLKLSCTLYQFLNAILEQRSYFSASFNNLKSLILCVTTAEWTVPLIIRLLNHSPNLEVLTIYFDSDEYYD*WEI*DKVILCLTCHLKTVELIDFSGNENELELVRFLLKNGHVLQKLRVSWLERC***
MENALQRSPIISKLTCGVCYNVGGEDGDRLSNLPEPIIHHIFSFLETIDVVRASAVSRKWRYLWLSIPYLNFNVHNICSNPLERWSLQTTNEKFKDFVNWVLLFQNGSVNEPIKLPRSLVTCESLVSLKLDFGNREHQGVLNLPTCVGFSRLKSLDLQHVESLDISTTSLKYLTVDEFLLSEPKGLRSCKVICESLEALKLHFGREIDSSPLLENLKMDSCCFPDLKILDISSNSLKSLTLERIEFGGDELDNYKLKIACSNLESFNIFAPLLPDFTLESLNSLQNAFIFLETIGEYMEAKEICHRMSKILNGLRDVKVLKLSCTLYQFLNAILEQRSYFSASFNNLKSLILCVTTAEWTVPLIIRLLNHSPNLEVLTIYFDSDEYYDDWEIPDKVILCLTCHLKTVELIDFSGNENELELVRFLLKNGHVLQKLRVSWLERCGES
*************LTCGVCY***GEDGDRLSNLPEPIIHHIFSFLETIDVVRASAVSRKWRYLWLSIPYLNFNVHNICSNPLERWSLQTTNEKFKDFVNWVLLFQNGSVNEPIKLPRSLVTCESLVSLKLDFGNREHQGVLNLPTCVGFSRLKSLDLQHVESLDISTTSLKYLTVDEFLLSEPKGLRSCKVICESLEALKLHFGREIDSSPLLENLKMDSCCFPDLKILDISSNSLKSLTLERIEFGGDELDNYKLKIACSNLESFNIFAPLLPDFTLESLNSLQNAFIFLETIGEYMEAKEICHRMSKILNGLRDVKVLKLSCTLYQFLNAILEQRSYFSASFNNLKSLILCVTTAEWTVPLIIRLLNHSPNLEVLTIYFDSDEYYDDWEIPDKVILCLTCHLKTVELIDFSGNENELELVRFLLKNGHVLQKLRVSWLER****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MENALQRSPIISKLTCGVCYNVGGEDGDRLSNLPEPIIHHIFSFLETIDVVRASAVSRKWRYLWLSIPYLNFNVHNICSNPLERWSLQTTNEKFKDFVNWVLLFQNGSVNEPIKLPRSLVTCESLVSLKLDFGNREHQGVLNLPTCVGFSRLKSLDLQHVESLDISTTSLKYLTVDEFLLSEPKGLRSCKVICESLEALKLHFGREIDSSPLLENLKMDSCCFPDLKILDISSNSLKSLTLERIEFGGDELDNYKLKIACSNLESFNIFAPLLPDFTLESLNSLQNAFIFLETIGEYMEAKEICHRMSKILNGLRDVKVLKLSCTLYQFLNAILEQRSYFSASFNNLKSLILCVTTAEWTVPLIIRLLNHSPNLEVLTIYFDSDEYYDDWEIPDKVILCLTCHLKTVELIDFSGNENELELVRFLLKNGHVLQKLRVSWLERCGES
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query446 2.2.26 [Sep-21-2011]
Q9FF58388 FBD-associated F-box prot yes no 0.778 0.894 0.28 6e-19
Q9FM89422 F-box/FBD/LRR-repeat prot no no 0.773 0.817 0.268 3e-18
Q9FM87430 Putative FBD-associated F no no 0.760 0.788 0.267 2e-16
Q56YH2441 FBD-associated F-box prot no no 0.876 0.886 0.261 9e-15
Q9SCQ5427 Putative FBD-associated F no no 0.825 0.861 0.244 2e-14
Q6DBN6435 F-box/FBD/LRR-repeat prot no no 0.798 0.818 0.248 8e-14
Q9LQM1422 Probable FBD-associated F no no 0.780 0.824 0.229 1e-13
Q9FM93439 FBD-associated F-box prot no no 0.782 0.794 0.244 2e-13
Q84X02405 FBD-associated F-box prot no no 0.791 0.871 0.251 2e-13
Q9LJF9434 F-box/FBD/LRR-repeat prot no no 0.852 0.875 0.253 7e-13
>sp|Q9FF58|FBD30_ARATH FBD-associated F-box protein At5g60610 OS=Arabidopsis thaliana GN=At5g60610 PE=2 SV=1 Back     alignment and function desciption
 Score = 95.9 bits (237), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 126/450 (28%), Positives = 186/450 (41%), Gaps = 103/450 (22%)

Query: 28  DRLSNLPEPIIHHIFSFLETIDVVRASAVSRKWRYLWLSIPYLNFNVHNICSNP------ 81
           DR+S LP+ ++  I SF+ T   V  S +S++W  LW  +P L  +    C+ P      
Sbjct: 2   DRISGLPDELLVKIISFVPTKVAVSTSILSKRWESLWKWVPKLECD----CTEPALRDFI 57

Query: 82  ----------LERWSLQTTNEK--FKDFVNW------------VLLFQNGSVNEPIKLPR 117
                     +E   L+   E   F+D   W             + F +   N  + LPR
Sbjct: 58  LKNLPLQARIIESLYLRFRRESFLFQDIKLWGGIAISHCLRELRIDFFSHYANPYVILPR 117

Query: 118 SLVTCESLVSLK-LDFGNREHQGVLNLPTCVGFSRLKSLDLQHVESLDISTTSLKYLTVD 176
           SL TC+SLV+LK L  G R     +++P  V    LK+L LQ V                
Sbjct: 118 SLYTCKSLVTLKLLGLGIR-----VDVPRDVCLPSLKTLLLQCVA--------------- 157

Query: 177 EFLLSEPKGLRSCKVICESLEALKLHFGREIDSSPLLENLKMDSCCFPDLKILDISSNSL 236
               SE   LR     C  LE L +    E+D +   +N+K      P L+ L +     
Sbjct: 158 ---YSEEDPLRLLLSCCPVLEDLVI----ELDDAN--QNVKALVVIVPTLQCLSL----- 203

Query: 237 KSLTLERIEFGGDELDNYKLKIACSNLESFNIFAPLLPDFTLESLNSLQNAFIFLETIGE 296
                             K+  +CS+ E + I  P L  F +E    + NA I  E + E
Sbjct: 204 ------------------KIPASCSD-ERYLIVTPSLKYFKVEDDREIFNALI--ENMPE 242

Query: 297 YMEAK-EICHRMSKILNGLRDVKVLKLSCTLYQFLNAILEQRSYFSASFNNLKSLILCVT 355
             EA   +   +  +L  +  VK L    TL Q  N+I E +      F  L+ L L + 
Sbjct: 243 LEEADIYVTQHIETLLESVTSVKRL----TLRQLYNSIDEYKCRAGIVFKQLEQLELSIC 298

Query: 356 TAEWTVPLIIRLLNHSPNLEVLTIYFDSD-EYYDDWE------IPDKVILCLTCHLKTVE 408
           +  WT  L+I LL +SPNL VL +  DSD E Y+++E      I   V  CL   LKT+E
Sbjct: 299 SDNWT-KLVIWLLQNSPNLRVLNLDADSDYERYEEYEQDNWKNIQRSVPKCLKSSLKTLE 357

Query: 409 LIDFSGNENELELVRFLLKNGHVLQKLRVS 438
              ++    E + + F+ K    L+   +S
Sbjct: 358 FAGYTARPEERDFLSFIFKKARCLKTSSIS 387

Arabidopsis thaliana (taxid: 3702)
>sp|Q9FM89|FDL38_ARATH F-box/FBD/LRR-repeat protein At5g56420 OS=Arabidopsis thaliana GN=At5g56420 PE=2 SV=1 Back     alignment and function description
>sp|Q9FM87|FBD26_ARATH Putative FBD-associated F-box protein At5g56440 OS=Arabidopsis thaliana GN=At5g56440 PE=4 SV=1 Back     alignment and function description
>sp|Q56YH2|FBD41_ARATH FBD-associated F-box protein At5g18780 OS=Arabidopsis thaliana GN=At5g18780 PE=2 SV=2 Back     alignment and function description
>sp|Q9SCQ5|FBD10_ARATH Putative FBD-associated F-box protein At3g50710 OS=Arabidopsis thaliana GN=At3g50710 PE=4 SV=1 Back     alignment and function description
>sp|Q6DBN6|FDL6_ARATH F-box/FBD/LRR-repeat protein At1g51370 OS=Arabidopsis thaliana GN=At1g51370 PE=2 SV=1 Back     alignment and function description
>sp|Q9LQM1|FBD39_ARATH Probable FBD-associated F-box protein At1g32375 OS=Arabidopsis thaliana GN=At1g32375 PE=4 SV=2 Back     alignment and function description
>sp|Q9FM93|FBD38_ARATH FBD-associated F-box protein At5g56380 OS=Arabidopsis thaliana GN=At5g56380 PE=2 SV=2 Back     alignment and function description
>sp|Q84X02|FBD7_ARATH FBD-associated F-box protein At2g26860 OS=Arabidopsis thaliana GN=At2g26860 PE=2 SV=2 Back     alignment and function description
>sp|Q9LJF9|FDL44_ARATH F-box/FBD/LRR-repeat protein At3g26920 OS=Arabidopsis thaliana GN=At3g26920 PE=2 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query446
296086770411 unnamed protein product [Vitis vinifera] 0.795 0.863 0.281 4e-22
147812093 607 hypothetical protein VITISV_040899 [Viti 0.829 0.609 0.273 1e-21
357459187 642 F-box family-3 [Medicago truncatula] gi| 0.869 0.604 0.270 4e-19
15239385388 FBD-associated F-box protein [Arabidopsi 0.778 0.894 0.28 4e-17
297796525423 F-box family protein [Arabidopsis lyrata 0.773 0.815 0.263 8e-17
224114976462 predicted protein [Populus trichocarpa] 0.827 0.798 0.264 2e-16
15241211422 F-box/FBD/LRR-repeat protein [Arabidopsi 0.773 0.817 0.268 2e-16
15241216430 FBD-associated F-box protein [Arabidopsi 0.760 0.788 0.267 1e-14
297819758426 F-box family protein [Arabidopsis lyrata 0.820 0.859 0.247 1e-14
357466225430 F-box/FBD/LRR-repeat protein [Medicago t 0.780 0.809 0.259 3e-14
>gi|296086770|emb|CBI32919.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 119/423 (28%), Positives = 199/423 (47%), Gaps = 68/423 (16%)

Query: 24  GEDGDRLSNLPEPIIHHIFSFLETIDVVRASAVSRKWRYLWLSIPYLNFNVHNICSNPLE 83
           G+  DR+SNLP+ ++ HI SFL T   V  S +S++WRYLW SIP    N+       L+
Sbjct: 6   GKSRDRISNLPDAVLCHIISFLPTKFAVGTSVLSKRWRYLWASIP----NLDFDDDLLLD 61

Query: 84  RWSLQTTNEK---FKDFVNWVLLFQNGSVNEPIKLPRSLVTCESLVSLKLDFGNREHQGV 140
           R      +E+   FK+FV+ VLL  +GS++              +   +L   + E    
Sbjct: 62  RDKPIGDSERSICFKNFVDKVLL--HGSIS-------------CIRKFRLKCSDHELDSA 106

Query: 141 LNLPTCVGFSRLKSLDLQHVESLDISTTSLKYLTVDEFLLSEPKGLRSCKVICESLEALK 200
           +N   C    R       +V+ LD+      Y   +  +   PK        C++L  LK
Sbjct: 107 VNSWICTALER-------NVQELDL------YFDTEYPIELPPKFF-----FCKTLVVLK 148

Query: 201 LHFGREIDSSPLLENLKMDSCCFPDLKILDISSNSLKSLTLERIEFGGDELDNYKLKIAC 260
           L         P+LE L ++     +  + ++S+ +LKSL +            YKL +  
Sbjct: 149 L--------CPVLEELVIERWRLDEQWVFNVSAPTLKSLAI--------YFSKYKLVVDA 192

Query: 261 SNLESFNIFAPLLPDFTLESLNSLQNAFIFLETIGEYMEA--KEICH--RMSKILNGLRD 316
            NLE  +I   +  D+ + +L+SL  A++    +G  +     +I +  R+ ++L G+ +
Sbjct: 193 PNLEYLSITDFVSEDYLMSNLSSLVKAYV---NVGPTIRGIDDQILYRGRIYELLRGISN 249

Query: 317 VKVLKLSCTLYQFLNAILEQRSYFSASFNNLKSLILCVTTAEWTVPLIIRLLNHSPNLEV 376
           VK L LS      L+ +     Y   +F+++  L L V    + +  +   L+ SPNLE+
Sbjct: 250 VKHLSLSGETLHSLSGMF--CGYELPAFHSVTRLELEVDYG-YGLEFLKEFLDTSPNLEI 306

Query: 377 LTIY-FDSDE-YYDDWEIPDKVILCLTCHLKTVELIDFSGNENELELVRFLLKNGHVLQK 434
           L +   + DE   ++W +P +V  C+  HL  VE+  F G + EL  + FLLKN  VL+K
Sbjct: 307 LILENVNKDECEIEEWTLPLQVPTCVELHLNEVEIKKFDGLDYELGAIEFLLKNARVLKK 366

Query: 435 LRV 437
           + +
Sbjct: 367 MSI 369

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147812093|emb|CAN74740.1| hypothetical protein VITISV_040899 [Vitis vinifera] Back     alignment and taxonomy information
>gi|357459187|ref|XP_003599874.1| F-box family-3 [Medicago truncatula] gi|355488922|gb|AES70125.1| F-box family-3 [Medicago truncatula] Back     alignment and taxonomy information
>gi|15239385|ref|NP_200869.1| FBD-associated F-box protein [Arabidopsis thaliana] gi|75262377|sp|Q9FF58.1|FBD30_ARATH RecName: Full=FBD-associated F-box protein At5g60610 gi|9759325|dbj|BAB09834.1| unnamed protein product [Arabidopsis thaliana] gi|21553400|gb|AAM62493.1| unknown [Arabidopsis thaliana] gi|332009973|gb|AED97356.1| FBD-associated F-box protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297796525|ref|XP_002866147.1| F-box family protein [Arabidopsis lyrata subsp. lyrata] gi|297311982|gb|EFH42406.1| F-box family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|224114976|ref|XP_002316907.1| predicted protein [Populus trichocarpa] gi|222859972|gb|EEE97519.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|15241211|ref|NP_200453.1| F-box/FBD/LRR-repeat protein [Arabidopsis thaliana] gi|42573694|ref|NP_974943.1| F-box/FBD/LRR-repeat protein [Arabidopsis thaliana] gi|75262699|sp|Q9FM89.1|FDL38_ARATH RecName: Full=F-box/FBD/LRR-repeat protein At5g56420 gi|10177841|dbj|BAB11270.1| unnamed protein product [Arabidopsis thaliana] gi|332009379|gb|AED96762.1| F-box/FBD/LRR-repeat protein [Arabidopsis thaliana] gi|332009380|gb|AED96763.1| F-box/FBD/LRR-repeat protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|15241216|ref|NP_200455.1| FBD-associated F-box protein [Arabidopsis thaliana] gi|75262697|sp|Q9FM87.1|FBD26_ARATH RecName: Full=Putative FBD-associated F-box protein At5g56440 gi|10177843|dbj|BAB11272.1| unnamed protein product [Arabidopsis thaliana] gi|332009382|gb|AED96765.1| FBD-associated F-box protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297819758|ref|XP_002877762.1| F-box family protein [Arabidopsis lyrata subsp. lyrata] gi|297323600|gb|EFH54021.1| F-box family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|357466225|ref|XP_003603397.1| F-box/FBD/LRR-repeat protein [Medicago truncatula] gi|355492445|gb|AES73648.1| F-box/FBD/LRR-repeat protein [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query446
TAIR|locus:2144905441 AT5G18780 "AT5G18780" [Arabido 0.885 0.895 0.267 8.7e-18
TAIR|locus:2020537492 AT1G55660 "AT1G55660" [Arabido 0.858 0.778 0.271 6.1e-17
TAIR|locus:504954836462 AT5G38396 [Arabidopsis thalian 0.874 0.844 0.258 1.5e-15
TAIR|locus:2101635448 AT3G44810 [Arabidopsis thalian 0.892 0.888 0.273 3.1e-15
TAIR|locus:2161098439 AT5G56380 "AT5G56380" [Arabido 0.854 0.867 0.259 3.8e-15
TAIR|locus:2099019457 AT3G58860 "AT3G58860" [Arabido 0.845 0.824 0.260 2.6e-14
TAIR|locus:2037578458 AT1G78750 "AT1G78750" [Arabido 0.872 0.849 0.268 5.8e-14
TAIR|locus:2010032416 AT1G13570 "AT1G13570" [Arabido 0.479 0.514 0.301 3.4e-13
TAIR|locus:2175861388 AT5G60610 "AT5G60610" [Arabido 0.522 0.600 0.308 3.8e-13
TAIR|locus:504954830403 AT5G38386 "AT5G38386" [Arabido 0.5 0.553 0.243 5.3e-13
TAIR|locus:2144905 AT5G18780 "AT5G18780" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 241 (89.9 bits), Expect = 8.7e-18, P = 8.7e-18
 Identities = 117/437 (26%), Positives = 203/437 (46%)

Query:    22 VGGEDGDRLSNLPEPIIHHIFSFLETIDVVRASAVSRKWRYLWLSIPYLNFNVHNICS-N 80
             V G   DR+S LPEP++ HI SFL T D VR S +S +WR LWL +P L+ +  +    N
Sbjct:     5 VRGSGEDRISILPEPLLCHILSFLRTKDSVRTSVLSSRWRDLWLWVPRLDLDKSDFSDDN 64

Query:    81 PLERWSLQTTNEKFKDFVNWVLLFQNGSVNEPIKLPRSLVTCESLVSLKLDFGNREHQGV 140
             P   +  +  N + + ++    L  +  V +       + T ++ + ++LD    +H  +
Sbjct:    65 PSASFVDKFLNFRGESYLRGFKLNTDHDVYD-------ISTLDACL-MRLDKCKIQHFEI 116

Query:   141 LNLPTCVGFS-RLKSLDLQHVESLDISTTSLKYLTVDEF-LLSEP--KGLRSCKVICESL 196
              N   C GF   L  L +    +L +S   L ++ + +F  LS P  + +   KVI  S 
Sbjct:   117 EN---CFGFCILLMPLIIPMCHTL-VSL-KLSFVILSKFGSLSLPCLEIMHFEKVIFPSD 171

Query:   197 EALKLHFGREIDSSPLLENLKMDSCCFPDLKILDISSNSLKSLTLERIEFGGDELDN--Y 254
             ++ ++     I  SP+L +L++       +++L + S SLKS TL+R +   D + N  Y
Sbjct:   172 KSAEVL----IACSPVLRDLRISQSGDDAVEVLRVCSASLKSFTLKRTDH--DYVGNGEY 225

Query:   255 KLKIACSNLESFNIFAPLLPDFTLESLNSLQNAFI--FLETIGEYMEAKE--ICHRMSKI 310
              + I    LE  N+       F + S++      +    E IG  + +K   IC  +S +
Sbjct:   226 TVVIDTPRLEYLNLKDYQCQGFKIVSMSEYVRVHVDVVFEVIGGTVLSKRNIICDFLSCV 285

Query:   311 LNGLRDVKVLKLSCTLYQFLNAILEQRSYFSA-SFNNLKSLILCVTTAEWTVPLIIRLLN 369
              N    V+ + +S    +F+   LE +  F       L++ +   ++ E  +P+I   L 
Sbjct:   286 SN----VRYMTISRRSLEFIYRHLELKPRFKFHDLARLRATMFSNSSPEM-LPVI---LE 337

Query:   370 HSPNLEVLTIYFDSDEYYDDWEIPDKVIL--CLTCHLKTVELID-FSGNENELELVRFLL 426
               PNL+ LT+    D    +       +L  CL   L +V++    +    EL+LV +LL
Sbjct:   338 TCPNLKHLTLELVHDSLVTEGTSGLLTVLPRCLISSLASVDIESPITDKATELKLVSYLL 397

Query:   427 KNGHVLQKLRVSWLERC 443
             +N   L+KL +   + C
Sbjct:   398 ENSTTLKKLVLRLNQSC 414
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA
TAIR|locus:2020537 AT1G55660 "AT1G55660" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504954836 AT5G38396 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2101635 AT3G44810 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2161098 AT5G56380 "AT5G56380" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2099019 AT3G58860 "AT3G58860" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037578 AT1G78750 "AT1G78750" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2010032 AT1G13570 "AT1G13570" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2175861 AT5G60610 "AT5G60610" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504954830 AT5G38386 "AT5G38386" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
AT5G60610
F-box family protein; F-box family protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 6 plant structures; EXPRESSED DURING- 4 anthesis, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s- Cyclin-like F-box (InterPro-IPR001810), FBD (InterPro-IPR013596), Leucine-rich repeat 2 (InterPro-IPR013101); BEST Arabidopsis thaliana protein match is- F-box family protein (TAIR-AT2G26860.1); Has 1374 Blast hits to 1339 proteins in 8 specie [...] (388 aa)
(Arabidopsis thaliana)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query446
pfam0838751 pfam08387, FBD, FBD 5e-10
pfam1293747 pfam12937, F-box-like, F-box-like 3e-07
pfam0064648 pfam00646, F-box, F-box domain 2e-06
smart0057972 smart00579, FBD, domain in FBox and BRCT domain co 7e-06
smart0025641 smart00256, FBOX, A Receptor for Ubiquitination Ta 7e-06
>gnl|CDD|203925 pfam08387, FBD, FBD Back     alignment and domain information 
 Score = 54.5 bits (132), Expect = 5e-10
 Identities = 21/49 (42%), Positives = 30/49 (61%)

Query: 390 WEIPDKVILCLTCHLKTVELIDFSGNENELELVRFLLKNGHVLQKLRVS 438
           W  P  V  CL   L+TVE   + G E ELEL +++L+N  VL+K+ +S
Sbjct: 2   WNQPSSVPECLLSSLETVEWRGYRGEEEELELAKYILENARVLKKMTIS 50

This region is found in F-box (pfam00646) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes. In fact, several family members are annotated as being similar to transcription factors. Length = 51
>gnl|CDD|221867 pfam12937, F-box-like, F-box-like Back     alignment and domain information
>gnl|CDD|201368 pfam00646, F-box, F-box domain Back     alignment and domain information
>gnl|CDD|214730 smart00579, FBD, domain in FBox and BRCT domain containing plant proteins Back     alignment and domain information
>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 446
KOG2120419 consensus SCF ubiquitin ligase, Skp2 component [Po 99.58
KOG4341483 consensus F-box protein containing LRR [General fu 99.4
PLN00113 968 leucine-rich repeat receptor-like protein kinase; 99.01
PF0838751 FBD: FBD; InterPro: IPR013596 This region is found 98.99
PLN00113 968 leucine-rich repeat receptor-like protein kinase; 98.97
PF1293747 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 98.68
KOG4194 873 consensus Membrane glycoprotein LIG-1 [Signal tran 98.62
KOG4194 873 consensus Membrane glycoprotein LIG-1 [Signal tran 98.59
PF0064648 F-box: F-box domain; InterPro: IPR001810 The F-box 98.24
smart0057972 FBD domain in FBox and BRCT domain containing plan 98.21
KOG1909382 consensus Ran GTPase-activating protein [RNA proce 98.19
smart0025641 FBOX A Receptor for Ubiquitination Targets. 98.13
PLN03210 1153 Resistant to P. syringae 6; Provisional 98.12
cd00116319 LRR_RI Leucine-rich repeats (LRRs), ribonuclease i 98.03
PLN03210 1153 Resistant to P. syringae 6; Provisional 97.96
KOG3207505 consensus Beta-tubulin folding cofactor E [Posttra 97.91
cd00116319 LRR_RI Leucine-rich repeats (LRRs), ribonuclease i 97.89
PRK15387 788 E3 ubiquitin-protein ligase SspH2; Provisional 97.86
PRK15370 754 E3 ubiquitin-protein ligase SlrP; Provisional 97.71
KOG3207 505 consensus Beta-tubulin folding cofactor E [Posttra 97.65
PF14580175 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ 97.62
KOG4341483 consensus F-box protein containing LRR [General fu 97.49
PF14580175 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ 97.48
PRK15387 788 E3 ubiquitin-protein ligase SspH2; Provisional 97.41
KOG0618 1081 consensus Serine/threonine phosphatase 2C containi 97.34
KOG2120419 consensus SCF ubiquitin ligase, Skp2 component [Po 97.33
KOG0472565 consensus Leucine-rich repeat protein [Function un 97.19
KOG1909382 consensus Ran GTPase-activating protein [RNA proce 97.16
KOG0444 1255 consensus Cytoskeletal regulator Flightless-I (con 97.13
KOG0444 1255 consensus Cytoskeletal regulator Flightless-I (con 97.08
KOG0617264 consensus Ras suppressor protein (contains leucine 96.97
KOG0618 1081 consensus Serine/threonine phosphatase 2C containi 96.87
PRK15370 754 E3 ubiquitin-protein ligase SlrP; Provisional 96.84
KOG2982418 consensus Uncharacterized conserved protein [Funct 96.82
KOG3665 699 consensus ZYG-1-like serine/threonine protein kina 96.65
KOG4237498 consensus Extracellular matrix protein slit, conta 96.47
COG5238388 RNA1 Ran GTPase-activating protein (RanGAP) involv 96.36
KOG3665 699 consensus ZYG-1-like serine/threonine protein kina 96.29
PF1385561 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF 96.11
KOG1259490 consensus Nischarin, modulator of integrin alpha5 95.74
PF0772326 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Le 95.39
KOG0617264 consensus Ras suppressor protein (contains leucine 95.12
KOG1644233 consensus U2-associated snRNP A' protein [RNA proc 94.87
KOG2123 388 consensus Uncharacterized conserved protein [Funct 94.79
KOG2982 418 consensus Uncharacterized conserved protein [Funct 94.72
KOG0472565 consensus Leucine-rich repeat protein [Function un 94.21
PF1279944 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ 94.21
PF1279944 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ 94.15
PF1385561 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF 94.1
PLN03150623 hypothetical protein; Provisional 94.08
KOG1947482 consensus Leucine rich repeat proteins, some prote 93.95
PLN03150623 hypothetical protein; Provisional 93.95
KOG0281499 consensus Beta-TrCP (transducin repeats containing 93.89
KOG2739260 consensus Leucine-rich acidic nuclear protein [Cel 93.78
KOG1947482 consensus Leucine rich repeat proteins, some prote 93.57
PLN03215373 ascorbic acid mannose pathway regulator 1; Provisi 93.22
KOG1259490 consensus Nischarin, modulator of integrin alpha5 92.63
KOG2739260 consensus Leucine-rich acidic nuclear protein [Cel 91.77
KOG1859 1096 consensus Leucine-rich repeat proteins [General fu 91.75
KOG2997366 consensus F-box protein FBX9 [General function pre 91.33
KOG4658889 consensus Apoptotic ATPase [Signal transduction me 91.32
COG4886394 Leucine-rich repeat (LRR) protein [Function unknow 90.43
COG4886394 Leucine-rich repeat (LRR) protein [Function unknow 89.69
KOG1644233 consensus U2-associated snRNP A' protein [RNA proc 88.9
PRK15386426 type III secretion protein GogB; Provisional 87.16
KOG2123388 consensus Uncharacterized conserved protein [Funct 86.83
KOG4237498 consensus Extracellular matrix protein slit, conta 86.21
PF13013109 F-box-like_2: F-box-like domain 85.04
KOG1859 1096 consensus Leucine-rich repeat proteins [General fu 84.4
PRK15386426 type III secretion protein GogB; Provisional 84.36
KOG4658889 consensus Apoptotic ATPase [Signal transduction me 84.17
KOG0274537 consensus Cdc4 and related F-box and WD-40 protein 80.28
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=99.58  E-value=1.4e-16  Score=146.63  Aligned_cols=272  Identities=19%  Similarity=0.201  Sum_probs=168.2

Q ss_pred             CCCCCCHHHHHHHhcCCChHHHHhhhhcchhhhhh------hcccceEEEecCCcchHHHHHHHhccCCC------Ccc-
Q 013278           29 RLSNLPEPIIHHIFSFLETIDVVRASAVSRKWRYL------WLSIPYLNFNVHNICSNPLERWSLQTTNE------KFK-   95 (446)
Q Consensus        29 ~is~LPdeiL~~Ils~Lp~~d~~rts~lSrrWr~l------w~~~p~l~~~~~~~~~~~v~~~L~~~~~~------~f~-   95 (446)
                      .+..|||||+..||+.|+-+|+.+++.|||||+++      |...   ++.... ....+-..+.+++.-      .|. 
T Consensus        97 ~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~l---Dl~~r~-i~p~~l~~l~~rgV~v~Rlar~~~~  172 (419)
T KOG2120|consen   97 SWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTL---DLTGRN-IHPDVLGRLLSRGVIVFRLARSFMD  172 (419)
T ss_pred             CcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeee---ccCCCc-cChhHHHHHHhCCeEEEEcchhhhc
Confidence            37789999999999999999999999999999986      5542   222221 111222222222221      121 


Q ss_pred             -----cHHHHHHh-hceeeeEc----ccccCCCccCCCCceEEEeccccccccccccCCCc---ccCCCccEEEeeceEe
Q 013278           96 -----DFVNWVLL-FQNGSVNE----PIKLPRSLVTCESLVSLKLDFGNREHQGVLNLPTC---VGFSRLKSLDLQHVES  162 (446)
Q Consensus        96 -----~i~~w~~~-l~~L~l~~----~~~lp~~l~~~~~L~~L~L~~~~~~~~~~l~~p~~---~~~~~L~~L~L~~~~~  162 (446)
                           ....-.+. +++++++.    ...+...+..|..|+.|+|.|.      .+.+|..   +.=.+|+.|+|+.+.-
T Consensus       173 ~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~------~LdD~I~~~iAkN~~L~~lnlsm~sG  246 (419)
T KOG2120|consen  173 QPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGL------RLDDPIVNTIAKNSNLVRLNLSMCSG  246 (419)
T ss_pred             CchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhcccccc------ccCcHHHHHHhccccceeeccccccc
Confidence                 11111111 77777765    3334444556888999999988      7777532   3446889999988764


Q ss_pred             cCccccccccccchhhcccCcccCccchhhhhhHHHhhhccccccccCcccccccccccccCCc-ceEEEe--ccccceE
Q 013278          163 LDISTTSLKYLTVDEFLLSEPKGLRSCKVICESLEALKLHFGREIDSSPLLENLKMDSCCFPDL-KILDIS--SNSLKSL  239 (446)
Q Consensus       163 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ll~~cp~Le~L~L~~c~~~~~-~~l~i~--~~~Lr~L  239 (446)
                      .+            +                .++.-       ++++|..|.+|.|..|..... ....+.  +++|+.|
T Consensus       247 ~t------------~----------------n~~~l-------l~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~L  291 (419)
T KOG2120|consen  247 FT------------E----------------NALQL-------LLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQL  291 (419)
T ss_pred             cc------------h----------------hHHHH-------HHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhh
Confidence            43            2                66777       899999999999999974321 112222  4789999


Q ss_pred             EEeeeecCCCCCCCceEEEecCceeeEEEecCCCCceeecCCCCceEEEEEEEeccchhhhhHHhHHHHHHcccCCCccE
Q 013278          240 TLERIEFGGDELDNYKLKIACSNLESFNIFAPLLPDFTLESLNSLQNAFIFLETIGEYMEAKEICHRMSKILNGLRDVKV  319 (446)
Q Consensus       240 ~l~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~~~~~l~~~p~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~  319 (446)
                      .+++|+..-....+..+...+|+|..|+++++..-                             .......+-.++.+++
T Consensus       292 NlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l-----------------------------~~~~~~~~~kf~~L~~  342 (419)
T KOG2120|consen  292 NLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVML-----------------------------KNDCFQEFFKFNYLQH  342 (419)
T ss_pred             hhhhhHhhhhhhHHHHHHHhCCceeeecccccccc-----------------------------CchHHHHHHhcchhee
Confidence            99988753212233444556788888888776432                             1122445556777777


Q ss_pred             EEEechhHHHHHHHhhhcccCCCccCccceEEEEeecCcccHHhHHHHhhcCCCCcEEEEEec
Q 013278          320 LKLSCTLYQFLNAILEQRSYFSASFNNLKSLILCVTTAEWTVPLIIRLLNHSPNLEVLTIYFD  382 (446)
Q Consensus       320 L~l~~~~~~~~~~~~~~~~~~~p~f~~L~~L~l~~~~~~~~~l~l~~lL~~~P~Le~L~l~~~  382 (446)
                      |.++-++.-.-     .....+...+.|..|++..+..+..   +.-+.+.||+|+.-.-...
T Consensus       343 lSlsRCY~i~p-----~~~~~l~s~psl~yLdv~g~vsdt~---mel~~e~~~~lkin~q~~~  397 (419)
T KOG2120|consen  343 LSLSRCYDIIP-----ETLLELNSKPSLVYLDVFGCVSDTT---MELLKEMLSHLKINCQHFN  397 (419)
T ss_pred             eehhhhcCCCh-----HHeeeeccCcceEEEEeccccCchH---HHHHHHhCccccccceeee
Confidence            77765432100     0112244667788888876544432   2556778898876544443

>KOG4341 consensus F-box protein containing LRR [General function prediction only] Back     alignment and domain information
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional Back     alignment and domain information
>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members Back     alignment and domain information
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional Back     alignment and domain information
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B Back     alignment and domain information
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] Back     alignment and domain information
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] Back     alignment and domain information
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ] Back     alignment and domain information
>smart00579 FBD domain in FBox and BRCT domain containing plant proteins Back     alignment and domain information
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] Back     alignment and domain information
>smart00256 FBOX A Receptor for Ubiquitination Targets Back     alignment and domain information
>PLN03210 Resistant to P Back     alignment and domain information
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily Back     alignment and domain information
>PLN03210 Resistant to P Back     alignment and domain information
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily Back     alignment and domain information
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional Back     alignment and domain information
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional Back     alignment and domain information
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A Back     alignment and domain information
>KOG4341 consensus F-box protein containing LRR [General function prediction only] Back     alignment and domain information
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A Back     alignment and domain information
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional Back     alignment and domain information
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] Back     alignment and domain information
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0472 consensus Leucine-rich repeat protein [Function unknown] Back     alignment and domain information
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] Back     alignment and domain information
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] Back     alignment and domain information
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] Back     alignment and domain information
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] Back     alignment and domain information
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] Back     alignment and domain information
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional Back     alignment and domain information
>KOG2982 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] Back     alignment and domain information
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] Back     alignment and domain information
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] Back     alignment and domain information
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] Back     alignment and domain information
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A Back     alignment and domain information
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] Back     alignment and domain information
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] Back     alignment and domain information
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] Back     alignment and domain information
>KOG2123 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2982 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0472 consensus Leucine-rich repeat protein [Function unknown] Back     alignment and domain information
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B Back     alignment and domain information
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B Back     alignment and domain information
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A Back     alignment and domain information
>PLN03150 hypothetical protein; Provisional Back     alignment and domain information
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] Back     alignment and domain information
>PLN03150 hypothetical protein; Provisional Back     alignment and domain information
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] Back     alignment and domain information
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] Back     alignment and domain information
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional Back     alignment and domain information
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] Back     alignment and domain information
>KOG2997 consensus F-box protein FBX9 [General function prediction only] Back     alignment and domain information
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] Back     alignment and domain information
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown] Back     alignment and domain information
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown] Back     alignment and domain information
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] Back     alignment and domain information
>PRK15386 type III secretion protein GogB; Provisional Back     alignment and domain information
>KOG2123 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] Back     alignment and domain information
>PF13013 F-box-like_2: F-box-like domain Back     alignment and domain information
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] Back     alignment and domain information
>PRK15386 type III secretion protein GogB; Provisional Back     alignment and domain information
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] Back     alignment and domain information
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query446
2p1m_B 594 Transport inhibitor response 1 protein; F-BOX, leu 2e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
3ogk_B 592 Coronatine-insensitive protein 1; leucine rich rep 3e-08
1fs1_A53 SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L 9e-08
3l2o_B312 F-box only protein 4; small G protein fold, UBL co 9e-07
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 5e-06
2e31_A297 FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui 5e-06
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 7e-06
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 2e-04
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 Back     alignment and structure
 Score = 61.8 bits (150), Expect = 2e-10
 Identities = 61/432 (14%), Positives = 128/432 (29%), Gaps = 35/432 (8%)

Query: 28  DRLSNLPEPIIHHIFSFLE-TIDVVRASAVSRKWRYLWLSIPYLNFNVHNICSNPLERWS 86
               + PE ++ H+FSF++   D    S V + W  +          + N  +       
Sbjct: 4   RIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWC-RRKVFIGNCYAVSPATVI 62

Query: 87  LQTTNEKFKD------FVNWVLLFQNGSVNEPIKLPRSLVTCESLVSLKLDFGNREHQGV 140
            +    +  +      F ++ L+           +     +   L  ++L         +
Sbjct: 63  RRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCL 122

Query: 141 LNLPTCVGFSRLKSLDLQHVESLDISTTSLKYLTVDEFLLSEPKGLRSCKVICESLEALK 200
             +     F   K L L   E    ST  L  +      L E   LR   V   S   L 
Sbjct: 123 ELI--AKSFKNFKVLVLSSCEG--FSTDGLAAIAATCRNLKELD-LRESDVDDVSGHWLS 177

Query: 201 LHFGREIDSSPLLENLKMDSCC----FPDLKILDISSNSLKSLTLERIEFGGDELDNYKL 256
                  D+   L +L +        F  L+ L     +LKSL L R      E     L
Sbjct: 178 HFP----DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAV--PLE-KLATL 230

Query: 257 KIACSNLESFNIFAPLLPDFTLESLNSLQNAFIFLETIGEYMEAKEICHR-MSKILNGLR 315
                 LE          +   +  + L  A    + +       +     +  + +   
Sbjct: 231 LQRAPQLEELGTGG-YTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCS 289

Query: 316 DVKVLKLSCTLYQFLNAILEQRSYFSASFNNLKSLILCVTTAEWTVPLIIRLLNHSPNLE 375
            +  L LS       +  L +          L+ L +           +  L +   +L 
Sbjct: 290 RLTTLNLSYA--TVQSYDLVK---LLCQCPKLQRLWVLDY---IEDAGLEVLASTCKDLR 341

Query: 376 VLTIYF-DSDEYYDDWEIPDKVILCLTCHLKTVELIDFSGNENELELVRFLLKNGHVLQK 434
            L ++  +      +  + ++ ++ ++     +E + +   +     +  + +N   + +
Sbjct: 342 ELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTR 401

Query: 435 LRVSWLERCGES 446
            R+  +E     
Sbjct: 402 FRLCIIEPKAPD 413
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 Back     alignment and structure
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53 Back     alignment and structure
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312 Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 Back     alignment and structure
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Length = 297 Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464 Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query446
3ogk_B 592 Coronatine-insensitive protein 1; leucine rich rep 99.82
2p1m_B 594 Transport inhibitor response 1 protein; F-BOX, leu 99.79
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 99.79
4fmz_A347 Internalin; leucine rich repeat, structural genomi 99.15
4fcg_A328 Uncharacterized protein; structural genomics, PSI- 99.1
4fmz_A347 Internalin; leucine rich repeat, structural genomi 99.09
2id5_A 477 Lingo-1, leucine rich repeat neuronal 6A; CNS-spec 99.07
1o6v_A466 Internalin A; bacterial infection, extracellular r 99.06
2id5_A477 Lingo-1, leucine rich repeat neuronal 6A; CNS-spec 99.05
2z80_A353 TOLL-like receptor 2, variable lymphocyte recepto; 99.04
2p1m_B594 Transport inhibitor response 1 protein; F-BOX, leu 99.03
3v47_A455 TOLL-like receptor 5B and variable lymphocyte REC 99.01
3v47_A455 TOLL-like receptor 5B and variable lymphocyte REC 99.0
3t6q_A606 CD180 antigen; protein-protein complex, leucine ri 98.98
3o6n_A390 APL1; leucine-rich repeat, protein binding; HET: N 98.96
3o53_A317 Protein LRIM1, AGAP006348-PA; leucine-rich repeat, 98.95
3oja_A 487 Leucine-rich immune molecule 1; coiled-coil, helix 98.95
1xku_A330 Decorin; proteoglycan, leucine-rich repeat, struct 98.94
1xku_A330 Decorin; proteoglycan, leucine-rich repeat, struct 98.94
3ogk_B 592 Coronatine-insensitive protein 1; leucine rich rep 98.92
4fcg_A328 Uncharacterized protein; structural genomics, PSI- 98.92
3zyi_A452 Leucine-rich repeat-containing protein 4; cell adh 98.92
3zyj_A440 Leucine-rich repeat-containing protein 4C; cell ad 98.92
1o6v_A466 Internalin A; bacterial infection, extracellular r 98.92
3oja_B 597 Anopheles plasmodium-responsive leucine-rich REPE 98.91
1ogq_A313 PGIP-2, polygalacturonase inhibiting protein; inhi 98.9
3o6n_A390 APL1; leucine-rich repeat, protein binding; HET: N 98.9
3t6q_A 606 CD180 antigen; protein-protein complex, leucine ri 98.89
2ft3_A332 Biglycan; proteoglycan, dimer interface, structura 98.89
2z63_A570 TOLL-like receptor 4, variable lymphocyte recepto; 98.89
3rgz_A768 Protein brassinosteroid insensitive 1; phytohormon 98.88
3zyi_A452 Leucine-rich repeat-containing protein 4; cell adh 98.88
2z80_A353 TOLL-like receptor 2, variable lymphocyte recepto; 98.87
3zyj_A440 Leucine-rich repeat-containing protein 4C; cell ad 98.87
3rgz_A 768 Protein brassinosteroid insensitive 1; phytohormon 98.87
3vq2_A 606 TLR4, TOLL-like receptor 4; leucine rich repeat MD 98.87
3oja_B 597 Anopheles plasmodium-responsive leucine-rich REPE 98.86
3vq2_A606 TLR4, TOLL-like receptor 4; leucine rich repeat MD 98.85
3j0a_A 844 TOLL-like receptor 5; membrane protein, leucine-ri 98.83
1ozn_A285 Reticulon 4 receptor; NOGO receptor, MAD, myelinat 98.83
2z63_A570 TOLL-like receptor 4, variable lymphocyte recepto; 98.82
2z66_A306 Variable lymphocyte receptor B, TOLL-like recepto; 98.82
2z7x_B 520 TOLL-like receptor 1, variable lymphocyte recepto; 98.8
2ft3_A332 Biglycan; proteoglycan, dimer interface, structura 98.8
3bz5_A457 Internalin-J, INLJ; leucine rich repeat (LRR), cys 98.79
4eco_A636 Uncharacterized protein; leucine-rich repeats, pro 98.78
4ecn_A876 Leucine-rich repeat protein; leucine-rich repeats, 98.78
3j0a_A 844 TOLL-like receptor 5; membrane protein, leucine-ri 98.78
2ca6_A386 RAN GTPase-activating protein 1; GAP, GTPase activ 98.78
1fs1_A53 SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L 98.78
3g06_A 622 SSPH2 (leucine-rich repeat protein); E3 ubiquitin 98.77
2z66_A306 Variable lymphocyte receptor B, TOLL-like recepto; 98.77
1h6u_A308 Internalin H; cell adhesion, leucine rich repeat, 98.77
3bz5_A457 Internalin-J, INLJ; leucine rich repeat (LRR), cys 98.76
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 98.76
1ogq_A313 PGIP-2, polygalacturonase inhibiting protein; inhi 98.75
3g06_A 622 SSPH2 (leucine-rich repeat protein); E3 ubiquitin 98.72
4eco_A636 Uncharacterized protein; leucine-rich repeats, pro 98.71
1ozn_A285 Reticulon 4 receptor; NOGO receptor, MAD, myelinat 98.7
1h6u_A308 Internalin H; cell adhesion, leucine rich repeat, 98.7
4ecn_A876 Leucine-rich repeat protein; leucine-rich repeats, 98.69
3a79_B562 TLR6, VLRB.59, TOLL-like receptor 6, variable lymp 98.67
2z81_A 549 CD282 antigen, TOLL-like receptor 2, variable lymp 98.67
3oja_A 487 Leucine-rich immune molecule 1; coiled-coil, helix 98.66
3o53_A317 Protein LRIM1, AGAP006348-PA; leucine-rich repeat, 98.65
1ziw_A680 TOLL-like receptor 3; innate immunity, immune syst 98.62
2z7x_B 520 TOLL-like receptor 1, variable lymphocyte recepto; 98.62
2z62_A276 TOLL-like receptor 4, variable lymphocyte recepto; 98.61
3a79_B562 TLR6, VLRB.59, TOLL-like receptor 6, variable lymp 98.61
1ziw_A 680 TOLL-like receptor 3; innate immunity, immune syst 98.58
3rfs_A272 Internalin B, repeat modules, variable lymphocyte 98.57
2o6q_A270 Variable lymphocyte receptor A; leucine-rich repea 98.57
2z81_A 549 CD282 antigen, TOLL-like receptor 2, variable lymp 98.56
3rfs_A272 Internalin B, repeat modules, variable lymphocyte 98.54
4glp_A310 Monocyte differentiation antigen CD14; alpha beta 98.53
1wwl_A312 Monocyte differentiation antigen CD14; LPS, immune 98.52
1z7x_W461 Ribonuclease inhibitor; leucine-rich repeat, enzym 98.51
1p9a_G290 Platelet glycoprotein IB alpha chain precursor; pl 98.51
2o6q_A270 Variable lymphocyte receptor A; leucine-rich repea 98.51
2ca6_A386 RAN GTPase-activating protein 1; GAP, GTPase activ 98.51
1z7x_W461 Ribonuclease inhibitor; leucine-rich repeat, enzym 98.5
1p9a_G290 Platelet glycoprotein IB alpha chain precursor; pl 98.47
4glp_A310 Monocyte differentiation antigen CD14; alpha beta 98.44
1wwl_A312 Monocyte differentiation antigen CD14; LPS, immune 98.43
1h6t_A291 Internalin B; cell adhesion, leucine rich repeat, 98.43
4ezg_A197 Putative uncharacterized protein; internalin-A, le 98.42
1h6t_A291 Internalin B; cell adhesion, leucine rich repeat, 98.4
1jl5_A454 Outer protein YOPM; leucine-rich repeat, molecular 98.37
4ezg_A197 Putative uncharacterized protein; internalin-A, le 98.33
2z62_A276 TOLL-like receptor 4, variable lymphocyte recepto; 98.33
1m9s_A 605 Internalin B; cell invasion, GW domains, SH3 domai 98.32
2xwt_C239 Thyrotropin receptor; signaling protein-immune sys 98.3
1jl5_A454 Outer protein YOPM; leucine-rich repeat, molecular 98.3
3goz_A362 Leucine-rich repeat-containing protein; LEGL7, NES 98.3
3m19_A251 Variable lymphocyte receptor A diversity region; a 98.28
3m19_A251 Variable lymphocyte receptor A diversity region; a 98.25
2xwt_C239 Thyrotropin receptor; signaling protein-immune sys 98.24
4g8a_A 635 TOLL-like receptor 4; leucine rich repeat MD-2 rel 98.18
1m9s_A 605 Internalin B; cell invasion, GW domains, SH3 domai 98.16
3cvr_A 571 Invasion plasmid antigen; leucine rich repeat and 98.15
2e31_A297 FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui 98.14
2ell_A168 Acidic leucine-rich nuclear phosphoprotein 32 FAM 98.13
1xeu_A263 Internalin C; cellular invasion, leucine-rich repe 98.11
4g8a_A 635 TOLL-like receptor 4; leucine rich repeat MD-2 rel 98.09
2o6s_A208 Variable lymphocyte receptor B; leucine-rich repea 98.06
2je0_A149 Acidic leucine-rich nuclear phosphoprotein 32 FAM 98.04
1xeu_A263 Internalin C; cellular invasion, leucine-rich repe 97.99
3goz_A362 Leucine-rich repeat-containing protein; LEGL7, NES 97.99
3cvr_A 571 Invasion plasmid antigen; leucine rich repeat and 97.97
2v9t_B220 SLIT homolog 2 protein N-product; structural prote 97.96
2ell_A168 Acidic leucine-rich nuclear phosphoprotein 32 FAM 97.94
3e4g_A176 ATP synthase subunit S, mitochondrial; leucine-ric 97.94
4ay9_X350 Follicle-stimulating hormone receptor; hormone-rec 97.87
1a9n_A176 U2A', U2A'; complex (nuclear protein/RNA), RNA, sn 97.85
3e6j_A229 Variable lymphocyte receptor diversity region; var 97.85
3e6j_A229 Variable lymphocyte receptor diversity region; var 97.84
2v9t_B220 SLIT homolog 2 protein N-product; structural prote 97.8
2je0_A149 Acidic leucine-rich nuclear phosphoprotein 32 FAM 97.8
3l2o_B312 F-box only protein 4; small G protein fold, UBL co 97.77
2v70_A220 SLIT-2, SLIT homolog 2 protein N-product; neurogen 97.76
2o6s_A208 Variable lymphocyte receptor B; leucine-rich repea 97.75
1ds9_A198 Outer arm dynein; leucine-rich repeat, beta-BETA-a 97.74
2v70_A220 SLIT-2, SLIT homolog 2 protein N-product; neurogen 97.71
2xot_A361 Amphoterin-induced protein 1; cell adhesion, neuro 97.67
2ra8_A362 Uncharacterized protein Q64V53_bacfr; WGR domain, 97.67
3un9_A372 NLR family member X1; leucine rich repeat (LRR), a 97.62
1a9n_A176 U2A', U2A'; complex (nuclear protein/RNA), RNA, sn 97.59
1w8a_A192 SLIT protein; signaling protein, secreted protein, 97.57
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 97.5
2xot_A361 Amphoterin-induced protein 1; cell adhesion, neuro 97.47
1dce_A567 Protein (RAB geranylgeranyltransferase alpha subun 97.43
3e4g_A176 ATP synthase subunit S, mitochondrial; leucine-ric 97.36
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 97.27
2wfh_A193 SLIT homolog 2 protein C-product; developmental pr 97.26
2o6r_A177 Variable lymphocyte receptor B; leucine-rich repea 97.24
2wfh_A193 SLIT homolog 2 protein C-product; developmental pr 97.24
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 97.16
1w8a_A192 SLIT protein; signaling protein, secreted protein, 97.15
1ds9_A198 Outer arm dynein; leucine-rich repeat, beta-BETA-a 97.12
2o6r_A177 Variable lymphocyte receptor B; leucine-rich repea 97.02
4b8c_D 727 Glucose-repressible alcohol dehydrogenase transcr 96.96
3g39_A170 Variable lymphocyte receptor VLRB.2D; antibody, X- 96.91
2r9u_A174 Variable lymphocyte receptor; adaptive immunity, V 96.81
1dce_A567 Protein (RAB geranylgeranyltransferase alpha subun 96.75
2ra8_A362 Uncharacterized protein Q64V53_bacfr; WGR domain, 96.71
4b8c_D 727 Glucose-repressible alcohol dehydrogenase transcr 96.67
3sb4_A329 Hypothetical leucine rich repeat protein; LRR, rig 96.55
2ifg_A347 High affinity nerve growth factor receptor; TRK, T 96.52
3g39_A170 Variable lymphocyte receptor VLRB.2D; antibody, X- 96.33
4ay9_X350 Follicle-stimulating hormone receptor; hormone-rec 96.28
2r9u_A174 Variable lymphocyte receptor; adaptive immunity, V 95.76
3un9_A372 NLR family member X1; leucine rich repeat (LRR), a 95.32
3sb4_A329 Hypothetical leucine rich repeat protein; LRR, rig 95.26
4fdw_A401 Leucine rich hypothetical protein; putative cell s 94.69
1io0_A185 Tropomodulin; LRR protein, right-handed super-heli 94.61
1io0_A185 Tropomodulin; LRR protein, right-handed super-heli 93.99
3rw6_A267 Nuclear RNA export factor 1; retroviral constituti 92.04
4fdw_A401 Leucine rich hypothetical protein; putative cell s 91.85
2ifg_A347 High affinity nerve growth factor receptor; TRK, T 91.46
3rw6_A267 Nuclear RNA export factor 1; retroviral constituti 87.52
4fs7_A394 Uncharacterized protein; leucine-rich repeats, pro 84.16
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Back     alignment and structure
Probab=99.82  E-value=6.8e-21  Score=200.27  Aligned_cols=368  Identities=15%  Similarity=0.102  Sum_probs=192.1

Q ss_pred             CCCCCC----CCCHHHHHHHhcCC-ChHHHHhhhhcchhhhhhhcccc-eEEEecCCcchHHHHHHHhccCCC---C---
Q 013278           26 DGDRLS----NLPEPIIHHIFSFL-ETIDVVRASAVSRKWRYLWLSIP-YLNFNVHNICSNPLERWSLQTTNE---K---   93 (446)
Q Consensus        26 ~~d~is----~LPdeiL~~Ils~L-p~~d~~rts~lSrrWr~lw~~~p-~l~~~~~~~~~~~v~~~L~~~~~~---~---   93 (446)
                      +.||++    +|||||+.+||+|| |.+|+++++.|||||++++...+ .+.+..  .+......++.....-   .   
T Consensus         5 ~~~r~~~~~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~L~~L~L~~   82 (592)
T 3ogk_B            5 DIKRCKLSCVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMAL--CYTATPDRLSRRFPNLRSLKLKG   82 (592)
T ss_dssp             -------CCCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEESC--GGGSCHHHHHHHCTTCSEEEEEC
T ss_pred             hhhhHhhccCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEee--ccccChHHHHHhCCCCeEEEecC
Confidence            345554    89999999999999 89999999999999999864433 222221  1222233333222221   0   


Q ss_pred             ------c-------c-cHHHHHHh-------hceeeeEcc---cccCCCccC-CCC-ceEEEeccccccccccccC---C
Q 013278           94 ------F-------K-DFVNWVLL-------FQNGSVNEP---IKLPRSLVT-CES-LVSLKLDFGNREHQGVLNL---P  144 (446)
Q Consensus        94 ------f-------~-~i~~w~~~-------l~~L~l~~~---~~lp~~l~~-~~~-L~~L~L~~~~~~~~~~l~~---p  144 (446)
                            |       . ....|+..       +++|++...   ...+..+.. +++ |++|+|.+|.     .+..   +
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~-----~~~~~~l~  157 (592)
T 3ogk_B           83 KPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCS-----GFTTDGLL  157 (592)
T ss_dssp             SCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCE-----EEEHHHHH
T ss_pred             CcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCC-----CcCHHHHH
Confidence                  0       0 22234432       566666541   011111112 333 6677776662     1111   1


Q ss_pred             C-cccCCCccEEEeeceEecCc----------cccccccccchhhcccCcccCccchhhhhhHHHhhhccccccccCccc
Q 013278          145 T-CVGFSRLKSLDLQHVESLDI----------STTSLKYLTVDEFLLSEPKGLRSCKVICESLEALKLHFGREIDSSPLL  213 (446)
Q Consensus       145 ~-~~~~~~L~~L~L~~~~~~~~----------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ll~~cp~L  213 (446)
                      . ...+++|++|+|++|.+.+.          ++++|++|++....++      .  .....+..       ++..||+|
T Consensus       158 ~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~------~--~~~~~l~~-------~~~~~~~L  222 (592)
T 3ogk_B          158 SIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFA------K--ISPKDLET-------IARNCRSL  222 (592)
T ss_dssp             HHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCS------S--CCHHHHHH-------HHHHCTTC
T ss_pred             HHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCC------c--cCHHHHHH-------HHhhCCCC
Confidence            1 12567777777777765442          3566777666541000      0  00033444       66677778


Q ss_pred             ccccccccccCCcceEEEeccccceEEEeeeecCCCCCCCceEEEecCceeeEEEecCCCCc--eeecCCCCceEEEEEE
Q 013278          214 ENLKMDSCCFPDLKILDISSNSLKSLTLERIEFGGDELDNYKLKIACSNLESFNIFAPLLPD--FTLESLNSLQNAFIFL  291 (446)
Q Consensus       214 e~L~L~~c~~~~~~~l~i~~~~Lr~L~l~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~~~--~~l~~~p~L~~l~l~~  291 (446)
                      +.|+|.+|...+....-...++|+.|.+..+................++|+++.+.+.....  ..+..+++|+.+++..
T Consensus       223 ~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~  302 (592)
T 3ogk_B          223 VSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLY  302 (592)
T ss_dssp             CEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETT
T ss_pred             cEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCC
Confidence            88877777644432222223677777776532211001111222345678888776643221  2345678888888864


Q ss_pred             EeccchhhhhHHhHHHHHHcccCCCccEEEEechhHHHHHHHhhhcccCCCccCccceEEEEe----------ecCcccH
Q 013278          292 ETIGEYMEAKEICHRMSKILNGLRDVKVLKLSCTLYQFLNAILEQRSYFSASFNNLKSLILCV----------TTAEWTV  361 (446)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~p~f~~L~~L~l~~----------~~~~~~~  361 (446)
                      +.   . .    ...+..++..+++|+.|.+........  .    ......+++|++|++..          + .....
T Consensus       303 ~~---l-~----~~~~~~~~~~~~~L~~L~L~~~~~~~~--l----~~~~~~~~~L~~L~L~~g~~~~~~~~~~-~~~~~  367 (592)
T 3ogk_B          303 AL---L-E----TEDHCTLIQKCPNLEVLETRNVIGDRG--L----EVLAQYCKQLKRLRIERGADEQGMEDEE-GLVSQ  367 (592)
T ss_dssp             CC---C-C----HHHHHHHHTTCTTCCEEEEEGGGHHHH--H----HHHHHHCTTCCEEEEECCCCSSTTSSTT-CCCCH
T ss_pred             Cc---C-C----HHHHHHHHHhCcCCCEEeccCccCHHH--H----HHHHHhCCCCCEEEeecCcccccccccc-CccCH
Confidence            32   1 1    122356678899999999984322110  0    00123567899999984          2 12222


Q ss_pred             HhHHHHhhcCCCCcEEEEEecCCCCCCCCCCCCCccccccccccceeEEecC---------CCHhHHHHHHHHHhcCccc
Q 013278          362 PLIIRLLNHSPNLEVLTIYFDSDEYYDDWEIPDKVILCLTCHLKTVELIDFS---------GNENELELVRFLLKNGHVL  432 (446)
Q Consensus       362 l~l~~lL~~~P~Le~L~l~~~~~~~~~~w~~~~~~~~~~~c~~~~L~~v~f~---------g~~~e~~~~~~ll~~a~~L  432 (446)
                      .++..+.+.||+|+.|.+....-      ... ....... ..++|+.+...         +... .+-+..++++.+.|
T Consensus       368 ~~~~~l~~~~~~L~~L~l~~~~l------~~~-~~~~l~~-~~~~L~~L~l~~~~~~n~l~~~p~-~~~~~~~~~~~~~L  438 (592)
T 3ogk_B          368 RGLIALAQGCQELEYMAVYVSDI------TNE-SLESIGT-YLKNLCDFRLVLLDREERITDLPL-DNGVRSLLIGCKKL  438 (592)
T ss_dssp             HHHHHHHHHCTTCSEEEEEESCC------CHH-HHHHHHH-HCCSCCEEEEEECSCCSCCSSCCC-HHHHHHHHHHCTTC
T ss_pred             HHHHHHHhhCccCeEEEeecCCc------cHH-HHHHHHh-hCCCCcEEEEeecCCCccccCchH-HHHHHHHHHhCCCC
Confidence            23477788899999999944331      000 0001111 12456666332         1111 12345567889999


Q ss_pred             cceEEEc
Q 013278          433 QKLRVSW  439 (446)
Q Consensus       433 ~~~~i~~  439 (446)
                      +.+.+..
T Consensus       439 ~~L~L~~  445 (592)
T 3ogk_B          439 RRFAFYL  445 (592)
T ss_dssp             CEEEEEC
T ss_pred             CEEEEec
Confidence            9999864
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Back     alignment and structure
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Back     alignment and structure
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Back     alignment and structure
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Back     alignment and structure
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Back     alignment and structure
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Back     alignment and structure
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Back     alignment and structure
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Back     alignment and structure
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Back     alignment and structure
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Back     alignment and structure
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Back     alignment and structure
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Back     alignment and structure
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Back     alignment and structure
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Back     alignment and structure
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Back     alignment and structure
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Back     alignment and structure
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Back     alignment and structure
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Back     alignment and structure
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Back     alignment and structure
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Back     alignment and structure
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Back     alignment and structure
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Back     alignment and structure
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Back     alignment and structure
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Back     alignment and structure
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Back     alignment and structure
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Back     alignment and structure
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Back     alignment and structure
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Back     alignment and structure
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Back     alignment and structure
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Back     alignment and structure
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Back     alignment and structure
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Back     alignment and structure
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Back     alignment and structure
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Back     alignment and structure
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Back     alignment and structure
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Back     alignment and structure
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Back     alignment and structure
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Back     alignment and structure
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Back     alignment and structure
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Back     alignment and structure
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Back     alignment and structure
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Back     alignment and structure
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Back     alignment and structure
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Back     alignment and structure
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Back     alignment and structure
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Back     alignment and structure
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Back     alignment and structure
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Back     alignment and structure
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Back     alignment and structure
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Back     alignment and structure
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Back     alignment and structure
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Back     alignment and structure
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Back     alignment and structure
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Back     alignment and structure
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Back     alignment and structure
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Back     alignment and structure
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Back     alignment and structure
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Back     alignment and structure
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Back     alignment and structure
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Back     alignment and structure
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Back     alignment and structure
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} Back     alignment and structure
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Back     alignment and structure
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Back     alignment and structure
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Back     alignment and structure
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Back     alignment and structure
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Back     alignment and structure
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Back     alignment and structure
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Back     alignment and structure
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} Back     alignment and structure
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Back     alignment and structure
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Back     alignment and structure
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Back     alignment and structure
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Back     alignment and structure
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Back     alignment and structure
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Back     alignment and structure
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Back     alignment and structure
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Back     alignment and structure
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Back     alignment and structure
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Back     alignment and structure
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Back     alignment and structure
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Back     alignment and structure
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Back     alignment and structure
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Back     alignment and structure
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* Back     alignment and structure
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Back     alignment and structure
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Back     alignment and structure
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Back     alignment and structure
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Back     alignment and structure
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Back     alignment and structure
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* Back     alignment and structure
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Back     alignment and structure
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Back     alignment and structure
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Back     alignment and structure
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Back     alignment and structure
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Back     alignment and structure
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Back     alignment and structure
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Back     alignment and structure
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Back     alignment and structure
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Back     alignment and structure
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Back     alignment and structure
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Back     alignment and structure
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Back     alignment and structure
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Back     alignment and structure
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Back     alignment and structure
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Back     alignment and structure
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Back     alignment and structure
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Back     alignment and structure
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Back     alignment and structure
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Back     alignment and structure
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Back     alignment and structure
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Back     alignment and structure
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Back     alignment and structure
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Back     alignment and structure
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Back     alignment and structure
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Back     alignment and structure
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Back     alignment and structure
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Back     alignment and structure
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Back     alignment and structure
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Back     alignment and structure
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Back     alignment and structure
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} Back     alignment and structure
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Back     alignment and structure
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Back     alignment and structure
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Back     alignment and structure
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Back     alignment and structure
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} Back     alignment and structure
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} Back     alignment and structure
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Back     alignment and structure
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Back     alignment and structure
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Back     alignment and structure
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Back     alignment and structure
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Back     alignment and structure
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} Back     alignment and structure
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A Back     alignment and structure
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Back     alignment and structure
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Back     alignment and structure
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Back     alignment and structure
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A Back     alignment and structure
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Back     alignment and structure
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Back     alignment and structure
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 446
d2ovrb1102 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing 5e-07
d1nexb1100 a.158.1.1 (B:270-369) Cdc4 F-box and linker domain 1e-06
d1p22a1118 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b 3e-06
d1fs1a141 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [ 6e-06
d1bdfa1105 d.74.3.1 (A:2-52,A:179-232) RNA polymerase alpha { 0.002
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102 Back     information, alignment and structure

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.8 bits (108), Expect = 5e-07
 Identities = 14/36 (38%), Positives = 23/36 (63%)

Query: 28 DRLSNLPEPIIHHIFSFLETIDVVRASAVSRKWRYL 63
          D +S LP+ +  ++ SFLE  D+++A+   R WR L
Sbjct: 17 DFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL 52
>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100 Back     information, alignment and structure
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118 Back     information, alignment and structure
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41 Back     information, alignment and structure
>d1bdfa1 d.74.3.1 (A:2-52,A:179-232) RNA polymerase alpha {Escherichia coli [TaxId: 562]} Length = 105 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query446
d1fs1a141 Skp2 {Human (Homo sapiens) [TaxId: 9606]} 98.96
d2astb2284 Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa 98.86
d2astb2284 Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa 98.83
d2ovrb1102 F-box/WD repeat-containing protein 7, FBXW7 {Human 98.62
d1nexb1100 Cdc4 F-box and linker domains {Baker's yeast (Sacc 98.56
d1h6ua2227 Internalin H {Listeria monocytogenes [TaxId: 1639] 98.49
d1h6ta2210 Internalin B {Listeria monocytogenes [TaxId: 1639] 98.46
d2omxa2199 Internalin B {Listeria monocytogenes [TaxId: 1639] 98.43
d1p9ag_266 von Willebrand factor binding domain of glycoprote 98.41
d1h6ta2210 Internalin B {Listeria monocytogenes [TaxId: 1639] 98.33
d1ogqa_313 Polygalacturonase inhibiting protein PGIP {Kidney 98.32
d1xkua_305 Decorin {Cow (Bos taurus) [TaxId: 9913]} 98.27
d2omxa2199 Internalin B {Listeria monocytogenes [TaxId: 1639] 98.26
d1h6ua2227 Internalin H {Listeria monocytogenes [TaxId: 1639] 98.24
d2omza2384 Internalin A {Listeria monocytogenes [TaxId: 1639] 98.22
d1p22a1118 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 98.15
d1ozna_284 Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma 98.13
d1xkua_305 Decorin {Cow (Bos taurus) [TaxId: 9913]} 98.1
d1ogqa_313 Polygalacturonase inhibiting protein PGIP {Kidney 98.04
d1p9ag_266 von Willebrand factor binding domain of glycoprote 97.98
d2omza2384 Internalin A {Listeria monocytogenes [TaxId: 1639] 97.95
d1a9na_162 Splicesomal U2A' protein {Human (Homo sapiens) [Ta 97.94
d1dcea3124 Rab geranylgeranyltransferase alpha-subunit, C-ter 97.84
d1a9na_162 Splicesomal U2A' protein {Human (Homo sapiens) [Ta 97.82
d2ca6a1344 Rna1p (RanGAP1), N-terminal domain {Fission yeast 97.67
d1dcea3124 Rab geranylgeranyltransferase alpha-subunit, C-ter 97.63
d1ozna_284 Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma 97.6
d1m9la_198 Outer arm dynein light chain 1 {Green algae (Chlam 97.53
d1m9la_198 Outer arm dynein light chain 1 {Green algae (Chlam 97.44
d1w8aa_192 Slit {Fruit fly (Drosophila melanogaster) [TaxId: 97.44
d1xwdc1242 Follicle-stimulating hormone receptor {Human (Homo 97.22
d2ca6a1344 Rna1p (RanGAP1), N-terminal domain {Fission yeast 97.19
d1w8aa_192 Slit {Fruit fly (Drosophila melanogaster) [TaxId: 96.75
d2ifga3156 High affinity nerve growth factor receptor, N-term 96.61
d1xwdc1242 Follicle-stimulating hormone receptor {Human (Homo 96.17
d1jl5a_353 Leucine rich effector protein YopM {Yersinia pesti 96.0
d1jl5a_353 Leucine rich effector protein YopM {Yersinia pesti 95.73
d2ifga3156 High affinity nerve growth factor receptor, N-term 95.5
d1z7xw1 460 Ribonuclease inhibitor {Human (Homo sapiens) [TaxI 95.19
d1z7xw1 460 Ribonuclease inhibitor {Human (Homo sapiens) [TaxI 94.43
d1io0a_166 Tropomodulin C-terminal domain {Chicken (Gallus ga 93.15
d1pgva_167 Tropomodulin C-terminal domain {nematode (Caenorha 92.69
d1koha1162 mRNA export factor tap {Human (Homo sapiens) [TaxI 92.17
d1koha1162 mRNA export factor tap {Human (Homo sapiens) [TaxI 89.64
d1pgva_167 Tropomodulin C-terminal domain {nematode (Caenorha 88.92
d1io0a_166 Tropomodulin C-terminal domain {Chicken (Gallus ga 82.11
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=1.8e-10  Score=73.79  Aligned_cols=35  Identities=29%  Similarity=0.553  Sum_probs=32.9

Q ss_pred             CCCCCHHHHHHHhcCCChHHHHhhhhcchhhhhhh
Q 013278           30 LSNLPEPIIHHIFSFLETIDVVRASAVSRKWRYLW   64 (446)
Q Consensus        30 is~LPdeiL~~Ils~Lp~~d~~rts~lSrrWr~lw   64 (446)
                      ++.||+||+.+||+|||.+|.++++.|||+|+++-
T Consensus         1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~   35 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLA   35 (41)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHH
T ss_pred             CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            46899999999999999999999999999999874
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Back     information, alignment and structure
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Back     information, alignment and structure
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Back     information, alignment and structure
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Back     information, alignment and structure
>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Back     information, alignment and structure
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Back     information, alignment and structure
>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure