Citrus Sinensis ID: 013288

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440------
MSFAMTMLSWSLIEYNHKYQSIGEYDHMRELIKWGTDYLLLTFNSSATKIDKIYAQVGGSQNGTSEPNDHNCWQRPEDMDYPRPVQTINAGPDLAGEMAAALAAASIVFKDNTAYSRKLVKGAKTVFDFAREGGKRRPYCRGNPFIEPYYNSSGYFDEYMWGAAWLYYATGNVSYLSLATNSGLPKNSKAFYRIPEKSVLSWDNKLPAAMLLLTRFRIFLSPGYPYEDMLRMYHNTTSLTMCSYLEQFHVFNWTRGGMVQLNQGKPQPLQYVANAAFLASLYVDYLNASGAPGFTCGPNFITLAKLRSFATSQIGYILGKNPMKMSYVVGYGKQFPRHVHHRGASIPSDGKKYSCKGGWKWSNNPKPNPHNITGAMVAGPDRFDKFNDVRTNHNYTEPTLAGNAGLVAALASLTTSAGIGIDKNTMFSAIPPLYPQSPPPPPQWKP
cHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccccEEEEEEccccccccccccccccccccccccccccEEcccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHccHHHHHHHHHccccccccccccEEEEccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccc
ccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEcccccccccccccHcccccccccccccEEccEccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccccccccccccHccccccHHHHHHHHHHHHHHHccHHHHHHHHcccHcccccccccccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEcccccccHHHHHHHHHHHHHHHHHHHHcccccEEcccccccHHHHHHHHHHHHHHHccccccccccEcccccccccccEcHHHHccccccEEEccccHHHHHHHccccccccccEccccccccccccccccHHHHEccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccc
MSFAMTMLSWSLIEYNHKYQSIGEYDHMRELIKWGTDYLLLTFNSSATKIDKIyaqvggsqngtsepndhncwqrpedmdyprpvqtinagpDLAGEMAAALAAASIVFKDNTAYSRKLVKGAKTVFDFareggkrrpycrgnpfiepyynssgyfdeyMWGAAWLYYATGNVSYLSLatnsglpknskafyripeksvlswDNKLPAAMLLLTRFRiflspgypyedmlRMYHNTTSLTMCSYLEQFHvfnwtrggmvqlnqgkpqplqYVANAAFLASLYVDYlnasgapgftcgpnfITLAKLRSFATSQIGyilgknpmkmSYVVgygkqfprhvhhrgasipsdgkkysckggwkwsnnpkpnphnitgamvagpdrfdkfndvrtnhnyteptlagNAGLVAALASLTtsagigidkntmfsaipplypqspppppqwkp
MSFAMTMLSWSLIEYNHKYQSIGEYDHMRELIKWGTDYLLLTFNSSATKIDKIYAQvggsqngtsePNDHNCWQRPEDMDYPRPVQTINAGPDLAGEMAAALAAASIVFKDNTAYSRKLVKGAKtvfdfareggkrrpycrgnpfIEPYYNSSGYFDEYMWGAAWLYYATGNVSYLSLATNSGLPKNSKAFYRIPEKSVLSWDNKLPAAMLLLTRFRIFLSPGYPYEDMLRMYHNTTSLTMCSYLEQFHVFNWTRGGMVQLNQGKPQPLQYVANAAFLASLYVDYLNASGAPGFTCGPNFITLAKLRSFATSQIGYILGKNPMKMSYVVGYGKQFPRHVHhrgasipsdgkkySCKGGWKWSNNPKPNPHNITGAMVAGPDRFDKFNDVRTNHNYTEPTLAGNAGLVAALASLTTSAGIGIDKNTMFSAIpplypqspppppqwkp
MSFAMTMLSWSLIEYNHKYQSIGEYDHMRELIKWGTDYLLLTFNSSATKIDKIYAQVGGSQNGTSEPNDHNCWQRPEDMDYPRPVQTINAGPDLAGEMaaalaaaSIVFKDNTAYSRKLVKGAKTVFDFAREGGKRRPYCRGNPFIEPYYNSSGYFDEYMWGAAWLYYATGNVSYLSLATNSGLPKNSKAFYRIPEKSVLSWDNKLPAAMLLLTRFRIFLSPGYPYEDMLRMYHNTTSLTMCSYLEQFHVFNWTRGGMVQLNQGKPQPLQYVANAAFLASLYVDYLNASGAPGFTCGPNFITLAKLRSFATSQIGYILGKNPMKMSYVVGYGKQFPRHVHHRGASIPSDGKKYSCKGGWKWSNNPKPNPHNITGAMVAGPDRFDKFNDVRTNHNYTEPTlagnaglvaalaslttsagIGIDKNTMFSAIpplypqspppppqwkp
***AMTMLSWSLIEYNHKYQSIGEYDHMRELIKWGTDYLLLTFNSSATKIDKIYAQV**********************************PDLAGEMAAALAAASIVFKDNTAYSRKLVKGAKTVFDFAREGGKRRPYCRGNPFIEPYYNSSGYFDEYMWGAAWLYYATGNVSYLSLATNSGLPKNSKAFYRIPEKSVLSWDNKLPAAMLLLTRFRIFLSPGYPYEDMLRMYHNTTSLTMCSYLEQFHVFNWTRGGMVQLNQGKPQPLQYVANAAFLASLYVDYLNASGAPGFTCGPNFITLAKLRSFATSQIGYILGKNPMKMSYVVGYGKQFPRHVHHRGASI*****KYSCKGGWKW************GAMVAGPDRFDKFNDVRTNHNYTEPTLAGNAGLVAALASLTTSAGIGIDKNTMFSAI****************
MSFAMTMLSWSLIEYNHKYQSIGEYDHMRELIKWGTDYLLLTFNSSATKIDKIYAQVGGSQNGTSEPNDHNCWQRPEDMDYPRPVQTINAGPDLAGEMAAALAAASIVFKDNTAYSRKLVKGAKTVFDFAREGGKRRPYCRGNPFIEPYYNSSGYFDEYMWGAAWLYYATGNVSYLSLATNSGLPKNSKAFYRIPEKSVLSWDNKLPAAMLLLTRFRIFLSPGYPYEDMLRMYHNTTSLTMCSYLEQFHVFNWTRGGMVQLNQGKPQPLQYVANAAFLASLYVDYLNASGAPGFTCGPNFITLAKLRSFATSQIGYILGKNPMKMSYVVGYGKQFPRHVHHRGASIPSDGKKYSCKGGWKWSNNPKPNPHNITGAMVAGPDRFDKFNDVRTNHNYTEPTLAGNAGLVAALASLTTSAG****************************
MSFAMTMLSWSLIEYNHKYQSIGEYDHMRELIKWGTDYLLLTFNSSATKIDKIYAQVGGSQNGTSEPNDHNCWQRPEDMDYPRPVQTINAGPDLAGEMAAALAAASIVFKDNTAYSRKLVKGAKTVFDFAREGGKRRPYCRGNPFIEPYYNSSGYFDEYMWGAAWLYYATGNVSYLSLATNSGLPKNSKAFYRIPEKSVLSWDNKLPAAMLLLTRFRIFLSPGYPYEDMLRMYHNTTSLTMCSYLEQFHVFNWTRGGMVQLNQGKPQPLQYVANAAFLASLYVDYLNASGAPGFTCGPNFITLAKLRSFATSQIGYILGKNPMKMSYVVGYGKQFPRHVHHRGASIPSDGKKYSCKGGWKWSNNPKPNPHNITGAMVAGPDRFDKFNDVRTNHNYTEPTLAGNAGLVAALASLTTSAGIGIDKNTMFSAIPPLYPQ**********
MSFAMTMLSWSLIEYNHKYQSIGEYDHMRELIKWGTDYLLLTFNSSATKIDKIYAQVGGSQNGTSEPNDHNCWQRPEDMDYPRPVQTINAGPDLAGEMAAALAAASIVFKDNTAYSRKLVKGAKTVFDFAREGGKRRPYCRGNPFIEPYYNSSGYFDEYMWGAAWLYYATGNVSYLSLATNSGLPKNSKAFYRIPEKSVLSWDNKLPAAMLLLTRFRIFLSPGYPYEDMLRMYHNTTSLTMCSYLEQFHVFNWTRGGMVQLNQGKPQPLQYVANAAFLASLYVDYLNASGAPGFTCGPNFITLAKLRSFATSQIGYILGKNPMKMSYVVGYGKQFPRHVHHRGASIPSDGKKYSCKGGWKWSNNPKPNPHNITGAMVAGPDRFDKFNDVRTNHNYTEPTLAGNAGLVAALASLTTSAGIGIDKNTMFSAIPPLYPQS*PPP*****
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MSFAMTMLSWSLIEYNHKYQSIGEYDHMRELIKWGTDYLLLTFNSSATKIDKIYAQVGGSQNGTSEPNDHNCWQRPEDMDYPRPVQTINAGPDLAGEMAAALAAASIVFKDNTAYSRKLVKGAKTVFDFAREGGKRRPYCRGNPFIEPYYNSSGYFDEYMWGAAWLYYATGNVSYLSLATNSGLPKNSKAFYRIPEKSVLSWDNKLPAAMLLLTRFRIFLSPGYPYEDMLRMYHNTTSLTMCSYLEQFHVFNWTRGGMVQLNQGKPQPLQYVANAAFLASLYVDYLNASGAPGFTCGPNFITLAKLRSFATSQIGYILGKNPMKMSYVVGYGKQFPRHVHHRGASIPSDGKKYSCKGGWKWSNNPKPNPHNITGAMVAGPDRFDKFNDVRTNHNYTEPTLAGNAGLVAALASLTTSAGIGIDKNTMFSAIPPLYPQSPPPPPQWKP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query446 2.2.26 [Sep-21-2011]
Q7XUK4623 Endoglucanase 12 OS=Oryza yes no 1.0 0.715 0.628 1e-163
O04478623 Endoglucanase 7 OS=Arabid yes no 1.0 0.715 0.607 1e-159
P0C1U4619 Endoglucanase 9 OS=Oryza no no 0.955 0.688 0.614 1e-144
Q38890621 Endoglucanase 25 OS=Arabi no no 0.959 0.689 0.620 1e-144
Q84R49620 Endoglucanase 10 OS=Oryza no no 0.995 0.716 0.611 1e-143
Q9STW8620 Endoglucanase 21 OS=Arabi no no 0.964 0.693 0.608 1e-136
Q9FXI9515 Endoglucanase 2 OS=Arabid no no 0.865 0.749 0.397 4e-70
Q69SG5528 Endoglucanase 24 OS=Oryza no no 0.887 0.75 0.397 3e-68
Q5Z9P8518 Endoglucanase 18 OS=Oryza no no 0.887 0.764 0.400 3e-67
Q8LCP6525 Endoglucanase 10 OS=Arabi no no 0.856 0.727 0.394 8e-67
>sp|Q7XUK4|GUN12_ORYSJ Endoglucanase 12 OS=Oryza sativa subsp. japonica GN=GLU3 PE=2 SV=2 Back     alignment and function desciption
 Score =  574 bits (1479), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 283/450 (62%), Positives = 353/450 (78%), Gaps = 4/450 (0%)

Query: 1   MSFAMTMLSWSLIEYNHKYQSIGEYDHMRELIKWGTDYLLLTFNSSATKIDKIYAQVGGS 60
           ++F+MTMLSWS+IEY+ KY+++GEYDH+RELIKWGTDYLLLTFNSSA+ IDK+Y+QVG +
Sbjct: 174 LAFSMTMLSWSVIEYSAKYKAVGEYDHVRELIKWGTDYLLLTFNSSASTIDKVYSQVGIA 233

Query: 61  QNGTSEPNDHNCWQRPEDMDYPRPVQTINAGPDLAGEMAAALAAASIVFKDNTAYSRKLV 120
           +   ++P+DH CW RPEDM YPRPVQT  + PDL GEMAAALAAASIVF+DN AYS+KLV
Sbjct: 234 KINGTQPDDHYCWNRPEDMAYPRPVQTAGSAPDLGGEMAAALAAASIVFRDNAAYSKKLV 293

Query: 121 KGAKTVFDFAREGGKRRPYCRGNPFIEPYYNSSGYFDEYMWGAAWLYYATGNVSYLSLAT 180
            GA  V+ FAR  G+R PY RGN +IE YYNS+ Y+DEYMW AAW+YYATGN +Y++ AT
Sbjct: 294 NGAAAVYKFARSSGRRTPYSRGNQYIEYYYNSTSYWDEYMWSAAWMYYATGNNTYITFAT 353

Query: 181 NSGLPKNSKAFYRIPEKSVLSWDNKLPAAMLLLTRFRIFLSPGYPYEDMLRMYHNTTSLT 240
           +  LPKN+KAFY I + SV SWDNKLP A LLL+R R+FL+PGYPYE+ L  YHNTTS+ 
Sbjct: 354 DPRLPKNAKAFYSILDFSVFSWDNKLPGAELLLSRLRMFLNPGYPYEESLIGYHNTTSMN 413

Query: 241 MCSYLEQFHVFNWTRGGMVQLNQGKPQPLQYVANAAFLASLYVDYLNASGAPGFTCGPNF 300
           MC+Y  +F  FN+T+GG+ Q N GK QPLQY    +FLA+LY DY+ +   PG+ CGP F
Sbjct: 414 MCTYFPRFGAFNFTKGGLAQFNHGKGQPLQYTVANSFLAALYADYMESVNVPGWYCGPYF 473

Query: 301 ITLAKLRSFATSQIGYILGKNPMKMSYVVGYGKQFPRHVHHRGASIPSDGKKYSCKGGWK 360
           +T+  LRSFA SQ+ YILG NP KMSYVVGYGK++PR +HHRGAS P +G KYSC GG+K
Sbjct: 474 MTVDDLRSFARSQVNYILGDNPKKMSYVVGYGKKYPRRLHHRGASTPHNGIKYSCTGGYK 533

Query: 361 WSNNPKPNPHNITGAMVAGPDRFDKFNDVRTNHNYTEPTLAGNAGLVAALASLTTS---A 417
           W +    +P+ + GAMV GPD+ D+F D R  +   EPTL GNAGLVAAL +LT S   A
Sbjct: 534 WRDTKGADPNVLVGAMVGGPDKNDQFKDARLTYAQNEPTLVGNAGLVAALVALTNSGRGA 593

Query: 418 GI-GIDKNTMFSAIPPLYPQSPPPPPQWKP 446
           G+  +DKNTMFSA+PP++P +PPPP +WKP
Sbjct: 594 GVTAVDKNTMFSAVPPMFPATPPPPSKWKP 623

Oryza sativa subsp. japonica (taxid: 39947)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 4
>sp|O04478|GUN7_ARATH Endoglucanase 7 OS=Arabidopsis thaliana GN=KOR2 PE=2 SV=1 Back     alignment and function description
>sp|P0C1U4|GUN9_ORYSJ Endoglucanase 9 OS=Oryza sativa subsp. japonica GN=GLU1 PE=2 SV=1 Back     alignment and function description
>sp|Q38890|GUN25_ARATH Endoglucanase 25 OS=Arabidopsis thaliana GN=KOR PE=1 SV=1 Back     alignment and function description
>sp|Q84R49|GUN10_ORYSJ Endoglucanase 10 OS=Oryza sativa subsp. japonica GN=GLU2 PE=2 SV=1 Back     alignment and function description
>sp|Q9STW8|GUN21_ARATH Endoglucanase 21 OS=Arabidopsis thaliana GN=KOR3 PE=2 SV=1 Back     alignment and function description
>sp|Q9FXI9|GUN2_ARATH Endoglucanase 2 OS=Arabidopsis thaliana GN=At1g19940 PE=2 SV=1 Back     alignment and function description
>sp|Q69SG5|GUN24_ORYSJ Endoglucanase 24 OS=Oryza sativa subsp. japonica GN=Os09g0533900 PE=2 SV=1 Back     alignment and function description
>sp|Q5Z9P8|GUN18_ORYSJ Endoglucanase 18 OS=Oryza sativa subsp. japonica GN=Os06g0715300 PE=2 SV=1 Back     alignment and function description
>sp|Q8LCP6|GUN10_ARATH Endoglucanase 10 OS=Arabidopsis thaliana GN=At1g75680 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query446
255547422 624 endo-1,4-beta-glucanase, putative [Ricin 0.964 0.689 0.790 0.0
254031739 628 endo-1,4-beta-glucanase [Dimocarpus long 0.964 0.684 0.786 0.0
224101275 620 predicted protein [Populus trichocarpa] 1.0 0.719 0.760 0.0
224109152 621 predicted protein [Populus trichocarpa] 0.964 0.692 0.753 0.0
429326576 691 korrigan [Populus tomentosa] 0.964 0.622 0.748 0.0
356577316 630 PREDICTED: endoglucanase 7-like [Glycine 0.964 0.682 0.716 0.0
357462449 624 Endoglucanase [Medicago truncatula] gi|3 0.964 0.689 0.732 0.0
449524621 627 PREDICTED: endoglucanase 7-like [Cucumis 0.964 0.685 0.706 0.0
449470269 627 PREDICTED: endoglucanase 7-like [Cucumis 0.964 0.685 0.706 0.0
429326578 621 korrigan [Populus tomentosa] 0.964 0.692 0.709 1e-179
>gi|255547422|ref|XP_002514768.1| endo-1,4-beta-glucanase, putative [Ricinus communis] gi|223545819|gb|EEF47322.1| endo-1,4-beta-glucanase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  723 bits (1866), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/430 (79%), Positives = 386/430 (89%)

Query: 1   MSFAMTMLSWSLIEYNHKYQSIGEYDHMRELIKWGTDYLLLTFNSSATKIDKIYAQVGGS 60
           M++ MTMLSWSLIEYNHKY++IGEY+HMR+LIKWGTDYLLLTFNS+AT+IDKIY+QVGGS
Sbjct: 179 MAYTMTMLSWSLIEYNHKYKAIGEYNHMRDLIKWGTDYLLLTFNSTATRIDKIYSQVGGS 238

Query: 61  QNGTSEPNDHNCWQRPEDMDYPRPVQTINAGPDLAGEMAAALAAASIVFKDNTAYSRKLV 120
            NG++ P+DH CW+RPEDMDY RP   +  GPDLAGEMAAALAAASIVF+DNTAYS+KLV
Sbjct: 239 LNGSTTPDDHYCWERPEDMDYSRPSIPVTTGPDLAGEMAAALAAASIVFRDNTAYSKKLV 298

Query: 121 KGAKTVFDFAREGGKRRPYCRGNPFIEPYYNSSGYFDEYMWGAAWLYYATGNVSYLSLAT 180
           KGA+T+F FAR+ G+RR Y RG P+IEP+YNS+GY+DEYMWGAAWLYYATGNVSY++LAT
Sbjct: 299 KGAETLFAFARDPGRRRAYSRGQPYIEPFYNSTGYYDEYMWGAAWLYYATGNVSYIALAT 358

Query: 181 NSGLPKNSKAFYRIPEKSVLSWDNKLPAAMLLLTRFRIFLSPGYPYEDMLRMYHNTTSLT 240
           N G+PKNSKAFY   +  VLSWDNKLPAAMLLLTR+RIFLSPGYPYEDMLRMYHN T LT
Sbjct: 359 NPGIPKNSKAFYMTLDSRVLSWDNKLPAAMLLLTRYRIFLSPGYPYEDMLRMYHNVTGLT 418

Query: 241 MCSYLEQFHVFNWTRGGMVQLNQGKPQPLQYVANAAFLASLYVDYLNASGAPGFTCGPNF 300
           MCSYL+QFHV+NWTRGGM+QLN G+PQPLQYVANAAFL SL+VDYLNASG PG  CGPNF
Sbjct: 419 MCSYLQQFHVYNWTRGGMIQLNHGRPQPLQYVANAAFLTSLFVDYLNASGIPGLNCGPNF 478

Query: 301 ITLAKLRSFATSQIGYILGKNPMKMSYVVGYGKQFPRHVHHRGASIPSDGKKYSCKGGWK 360
           I+L  LR+FATSQI YILGKNPM MSYVVGYG +FPRHVHHR ASIP D K+YSC GGWK
Sbjct: 479 ISLVDLRTFATSQIDYILGKNPMNMSYVVGYGTKFPRHVHHRAASIPHDKKRYSCTGGWK 538

Query: 361 WSNNPKPNPHNITGAMVAGPDRFDKFNDVRTNHNYTEPTLAGNAGLVAALASLTTSAGIG 420
           W ++  PNP+NITGAMV GPDRFDKF+DVRT++NYTEPTLAGNAGLVAALASLT S G G
Sbjct: 539 WRDSRNPNPNNITGAMVGGPDRFDKFHDVRTSYNYTEPTLAGNAGLVAALASLTVSGGHG 598

Query: 421 IDKNTMFSAI 430
           IDKNT+FSA+
Sbjct: 599 IDKNTIFSAV 608

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|254031739|gb|ACT54547.1| endo-1,4-beta-glucanase [Dimocarpus longan] Back     alignment and taxonomy information
>gi|224101275|ref|XP_002312211.1| predicted protein [Populus trichocarpa] gi|222852031|gb|EEE89578.1| predicted protein [Populus trichocarpa] gi|347466549|gb|AEO97187.1| endo-1,4-beta-glucanase [Populus trichocarpa] gi|347466603|gb|AEO97214.1| endo-1,4-beta-glucanase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224109152|ref|XP_002315101.1| predicted protein [Populus trichocarpa] gi|222864141|gb|EEF01272.1| predicted protein [Populus trichocarpa] gi|347466547|gb|AEO97186.1| endo-1,4-beta-glucanase [Populus trichocarpa] gi|347466601|gb|AEO97213.1| endo-1,4-beta-glucanase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|429326576|gb|AFZ78628.1| korrigan [Populus tomentosa] Back     alignment and taxonomy information
>gi|356577316|ref|XP_003556773.1| PREDICTED: endoglucanase 7-like [Glycine max] Back     alignment and taxonomy information
>gi|357462449|ref|XP_003601506.1| Endoglucanase [Medicago truncatula] gi|355490554|gb|AES71757.1| Endoglucanase [Medicago truncatula] Back     alignment and taxonomy information
>gi|449524621|ref|XP_004169320.1| PREDICTED: endoglucanase 7-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449470269|ref|XP_004152840.1| PREDICTED: endoglucanase 7-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|429326578|gb|AFZ78629.1| korrigan [Populus tomentosa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query446
TAIR|locus:2034158623 KOR2 "KORRIGAN 2" [Arabidopsis 0.964 0.690 0.555 9.2e-139
TAIR|locus:2157022621 GH9A1 "glycosyl hydrolase 9A1" 0.959 0.689 0.579 1.3e-137
TAIR|locus:2135997620 GH9A3 "glycosyl hydrolase 9A3" 0.957 0.688 0.566 1.7e-128
TAIR|locus:2118519478 GH9B14 "glycosyl hydrolase 9B1 0.526 0.491 0.382 3.7e-72
TAIR|locus:2035384515 GH9B5 "glycosyl hydrolase 9B5" 0.845 0.732 0.389 5.5e-70
TAIR|locus:2005599525 GH9B7 "glycosyl hydrolase 9B7" 0.845 0.718 0.381 9.2e-68
TAIR|locus:2101099486 GH9A4 "glycosyl hydrolase 9A4" 0.522 0.479 0.392 1.3e-65
TAIR|locus:2014205620 GH9C2 "glycosyl hydrolase 9C2" 0.847 0.609 0.375 2.7e-61
TAIR|locus:2059375525 GH9B8 "glycosyl hydrolase 9B8" 0.843 0.716 0.385 5e-60
TAIR|locus:2136073 626 GH9C3 "glycosyl hydrolase 9C3" 0.847 0.603 0.365 1.3e-59
TAIR|locus:2034158 KOR2 "KORRIGAN 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1358 (483.1 bits), Expect = 9.2e-139, P = 9.2e-139
 Identities = 239/430 (55%), Positives = 316/430 (73%)

Query:     1 MSFAMTMLSWSLIEYNHKYQSIGEYDHMRELIKWGTDYLLLTFNSSATKIDKIYAQVGGS 60
             M+F+MTMLSWSLIEY+HKY++I EYDHMR+++KWGTDYLLLTFN+SAT++D IY QVGG 
Sbjct:   178 MAFSMTMLSWSLIEYSHKYKAIDEYDHMRDVLKWGTDYLLLTFNNSATRLDHIYTQVGGG 237

Query:    61 QNGTSEPNDHNCWQRPEDMDYPRPVQTINAGPDLAGEMXXXXXXXSIVFKDNTAYSRKLV 120
                +  P+D  CWQ+PEDM Y RPV +  +  DL  E+       SIVF D   Y++KL 
Sbjct:   238 LRDSESPDDIYCWQKPEDMSYDRPVLSSTSAADLGAEVSAALAAASIVFTDKPDYAKKLK 297

Query:   121 KGAKTVFDFAREGGKRRPYCRGNPFIEPYYNSSGYFDEYMWGAAWLYYATGNVSYLSLAT 180
             KGA+T++ F R   +R+ Y  G P  + +YNS+  FDE+MW  AWLYYATGN +Y+  AT
Sbjct:   298 KGAETLYPFFRSKSRRKRYSDGQPTAQAFYNSTSMFDEFMWAGAWLYYATGNKTYIQFAT 357

Query:   181 NSGLPKNSKAFYRIPEKSVLSWDNKLPAAMLLLTRFRIFLSPGYPYEDMLRMYHNTTSLT 240
                +P+ +KAF   PE  V SW+NKLP AMLL+TR+R+FL+PG+PYE+ML  YHN T +T
Sbjct:   358 TPSVPQTAKAFANRPELMVPSWNNKLPGAMLLMTRYRLFLNPGFPYENMLNRYHNATGIT 417

Query:   241 MCSYLEQFHVFNWTRGGMVQLNQGKPQPLQYVANAAFLASLYVDYLNASGAPGFTCGPNF 300
             MC+YL+Q++VFN T GG++QLN GKP+PL+YVA+A+FLASL+ DYLN++G PG+ CGP F
Sbjct:   418 MCAYLKQYNVFNRTSGGLMQLNLGKPRPLEYVAHASFLASLFADYLNSTGVPGWYCGPTF 477

Query:   301 ITLAKLRSFATSQIGYILGKNPMKMSYVVGYGKQFPRHVHHRGASIPSDGKKYSCKGGWK 360
             +    L+ FA SQI YILG NP+KMSYVVG+GK+FPR VHHRGA+IP+D K+ SC+ G K
Sbjct:   478 VENHVLKDFAQSQIDYILGDNPLKMSYVVGFGKKFPRRVHHRGATIPNDKKRRSCREGLK 537

Query:   361 WSNNPKPNPHNITGAMVAGPDRFDKFNDVRTNHNYTEPTXXXXXXXXXXXXXXXXXXXIG 420
             + +   PNP+NITGAMV GP++FD+F+D+R N+N +EPT                     
Sbjct:   538 YRDTKNPNPNNITGAMVGGPNKFDEFHDLRNNYNASEPTLSGNAGLVAALVSLTSSGGQQ 597

Query:   421 IDKNTMFSAI 430
             IDKNTMF+++
Sbjct:   598 IDKNTMFNSV 607
GO:0003824 "catalytic activity" evidence=IEA
GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds" evidence=IEA;ISS
GO:0005886 "plasma membrane" evidence=ISM
GO:0005975 "carbohydrate metabolic process" evidence=IEA
TAIR|locus:2157022 GH9A1 "glycosyl hydrolase 9A1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2135997 GH9A3 "glycosyl hydrolase 9A3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2118519 GH9B14 "glycosyl hydrolase 9B14" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2035384 GH9B5 "glycosyl hydrolase 9B5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2005599 GH9B7 "glycosyl hydrolase 9B7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2101099 GH9A4 "glycosyl hydrolase 9A4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2014205 GH9C2 "glycosyl hydrolase 9C2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2059375 GH9B8 "glycosyl hydrolase 9B8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2136073 GH9C3 "glycosyl hydrolase 9C3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O04478GUN7_ARATH3, ., 2, ., 1, ., 40.60761.00.7158yesno
Q7XUK4GUN12_ORYSJ3, ., 2, ., 1, ., 40.62881.00.7158yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.1.40.914
3rd Layer3.2.10.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00009333001
SubName- Full=Chromosome undetermined scaffold_229, whole genome shotgun sequence; (620 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query446
pfam00759437 pfam00759, Glyco_hydro_9, Glycosyl hydrolase famil 1e-133
PLN02345469 PLN02345, PLN02345, endoglucanase 1e-126
PLN02266510 PLN02266, PLN02266, endoglucanase 3e-95
PLN02613498 PLN02613, PLN02613, endoglucanase 4e-95
PLN02340614 PLN02340, PLN02340, endoglucanase 3e-91
PLN00119489 PLN00119, PLN00119, endoglucanase 8e-91
PLN02171 629 PLN02171, PLN02171, endoglucanase 4e-90
PLN02909486 PLN02909, PLN02909, Endoglucanase 7e-90
PLN02420525 PLN02420, PLN02420, endoglucanase 5e-81
PLN02308492 PLN02308, PLN02308, endoglucanase 2e-75
PLN02175484 PLN02175, PLN02175, endoglucanase 4e-71
PLN03009495 PLN03009, PLN03009, cellulase 6e-69
>gnl|CDD|216104 pfam00759, Glyco_hydro_9, Glycosyl hydrolase family 9 Back     alignment and domain information 
 Score =  390 bits (1003), Expect = e-133
 Identities = 168/417 (40%), Positives = 219/417 (52%), Gaps = 47/417 (11%)

Query: 1   MSFAMTMLSWSLIEYNHKYQSIGEYDHMRELIKWGTDYLLLTFNSSATKIDKIYAQVGGS 60
           M+   TML+WS+ EY   Y+S G+   + + I+W TDYLL    +        Y QVG  
Sbjct: 62  MAITTTMLAWSVYEYGKAYESGGQLPDLLDEIRWATDYLLKAHTAPNVL----YVQVG-- 115

Query: 61  QNGTSEPN-DHNCWQRPEDMDYPRPVQTI---NAGPDLAGEMAAALAAASIVFKD-NTAY 115
                + N DH CW RPEDM   RPV  I   N G D+A E AAALAAASIVFKD +  Y
Sbjct: 116 -----DGNVDHKCWGRPEDMPTARPVYKIDASNPGSDVAAETAAALAAASIVFKDSDPTY 170

Query: 116 SRKLVKGAKTVFDFAREGGKRRPYCRGNPFIEPYYNSSGYFDEYMWGAAWLYYATGNVSY 175
           + KL++ AKT++ FA +   R            +YNSSGY DE +W AAWLY ATG+ +Y
Sbjct: 171 AAKLLEHAKTLYAFADKYRGRYSDS-LYTAAGGFYNSSGYADELLWAAAWLYRATGDATY 229

Query: 176 LSLATNSGLPKNSKAFYRIPEKSVLSWDNKLPAAMLLLTRFRIFLSPGYPYEDMLRMYHN 235
           L+ A ++G    +   +      V SWDNK   A LLL +      PG       + Y +
Sbjct: 230 LNYAESNGASLGAGDQFD---NGVFSWDNKHAGAQLLLAKVT-LGLPGADV--AKQSYKS 283

Query: 236 TTSLTMCSYLEQ-FHVFNWTRGGMVQLNQGKPQPLQYVANAAFLASLYVDYLNASGAPGF 294
                +C +L   +    +T GG++ L Q     LQYV NAAFLA  Y DYL        
Sbjct: 284 AADRFLCYWLPGGYGQVQYTPGGLLYLYQWGS--LQYVTNAAFLALAYADYL-------- 333

Query: 295 TCGPNFITLAKLRSFATSQIGYILGKNPMKMSYVVGYGKQFPRHVHHRGASIPSDGKKYS 354
               +F   +K R FA  QI YILG NP+KMSYVVGYG+  P+  HHRGAS         
Sbjct: 334 ---SDFTGASKYRDFAKKQIDYILGDNPLKMSYVVGYGENPPQRPHHRGAS--------- 381

Query: 355 CKGGWKWSNNPKPNPHNITGAMVAGPDRFDKFNDVRTNHNYTEPTLAGNAGLVAALA 411
             G      +P PNP+ + GA+V GP+  D + D R++++  E     NA LV ALA
Sbjct: 382 -GGWSDSIPSPPPNPNVLVGALVGGPNSNDCYTDDRSDYSTNEVATNWNAPLVGALA 437

Length = 437
>gnl|CDD|177979 PLN02345, PLN02345, endoglucanase Back     alignment and domain information
>gnl|CDD|215150 PLN02266, PLN02266, endoglucanase Back     alignment and domain information
>gnl|CDD|215331 PLN02613, PLN02613, endoglucanase Back     alignment and domain information
>gnl|CDD|215194 PLN02340, PLN02340, endoglucanase Back     alignment and domain information
>gnl|CDD|177732 PLN00119, PLN00119, endoglucanase Back     alignment and domain information
>gnl|CDD|215115 PLN02171, PLN02171, endoglucanase Back     alignment and domain information
>gnl|CDD|178497 PLN02909, PLN02909, Endoglucanase Back     alignment and domain information
>gnl|CDD|178040 PLN02420, PLN02420, endoglucanase Back     alignment and domain information
>gnl|CDD|177943 PLN02308, PLN02308, endoglucanase Back     alignment and domain information
>gnl|CDD|177832 PLN02175, PLN02175, endoglucanase Back     alignment and domain information
>gnl|CDD|166650 PLN03009, PLN03009, cellulase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 446
PLN02345469 endoglucanase 100.0
PLN02340614 endoglucanase 100.0
PLN00119489 endoglucanase 100.0
PLN02171 629 endoglucanase 100.0
PLN02266510 endoglucanase 100.0
PLN02420525 endoglucanase 100.0
PLN02909486 Endoglucanase 100.0
PLN02308492 endoglucanase 100.0
PLN02613498 endoglucanase 100.0
PLN02175484 endoglucanase 100.0
PLN03009495 cellulase 100.0
PF00759444 Glyco_hydro_9: Glycosyl hydrolase family 9; InterP 100.0
cd00249384 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase d 95.94
PF03663370 Glyco_hydro_76: Glycosyl hydrolase family 76 ; Int 95.33
KOG2787403 consensus Lanthionine synthetase C-like protein 1 94.33
COG1331667 Highly conserved protein containing a thioredoxin 94.02
cd00249384 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase d 93.62
PF07221346 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcN 90.85
PF07944520 DUF1680: Putative glycosyl hydrolase of unknown fu 87.37
cd04791321 LanC_SerThrkinase Lanthionine synthetase C-like do 83.16
>PLN02345 endoglucanase Back     alignment and domain information 
Probab=100.00  E-value=2.1e-101  Score=797.87  Aligned_cols=396  Identities=45%  Similarity=0.787  Sum_probs=359.5

Q ss_pred             CchhHHHHHHHHHHhHHHHHhcCChHHHHHHHHHHHHHHHhhccccccccCeEEEEecCCCCCCCCCCCCCCCCCCCCCC
Q 013288            1 MSFAMTMLSWSLIEYNHKYQSIGEYDHMRELIKWGTDYLLLTFNSSATKIDKIYAQVGGSQNGTSEPNDHNCWQRPEDMD   80 (446)
Q Consensus         1 ~a~t~~~L~w~~~~f~~~y~~~~~~pdiLde~kwg~D~llk~~~~~~~~~g~~y~qVgd~~~~~~~~~Dh~~W~~Pe~~~   80 (446)
                      ||||+++|+|+++||++.|++.|++|||||||||++|||||||+.+    ++||+|||+.+.      ||.+|++||+|+
T Consensus        57 ~a~t~t~L~w~~~e~~~~~~~~~~~~~~ldelkw~~Dyllk~~~~~----~~~y~qVg~~~~------Dh~~W~~Pe~~~  126 (469)
T PLN02345         57 MAFTATVLSWSILEYGDQMNAANQLDSAKDSLKWITDYLINAHPSE----NVLYIQVGDPKL------DHKCWERPETMD  126 (469)
T ss_pred             hHHHHHHHHHHHHHhhhhhhcccchHHHHHHHhHHHHHHHHhcCCC----CeEEEEecCCCC------CcccCCChhhcC
Confidence            7999999999999999999999999999999999999999999998    999999999988      999999999999


Q ss_pred             CCCceeeCC---CcchHHHHHHHHHHHhccccc-CCHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCccCCCCccc
Q 013288           81 YPRPVQTIN---AGPDLAGEMAAALAAASIVFK-DNTAYSRKLVKGAKTVFDFAREGGKRRPYCRGNPFIEPYYNSSGYF  156 (446)
Q Consensus        81 ~~R~~~~~~---p~sd~t~~~AAaLA~As~vfk-~D~~yA~~~L~~A~~~y~~a~~~~~p~~y~~~~~~~~g~Y~s~~~~  156 (446)
                      .+|++|.++   |||++++++|||||+|||||| +||+||++||+|||++|+||++  +|+.|..+.+..+++|+|+++.
T Consensus       127 ~~R~~~~~~~~~pgsd~a~~~AAAlA~as~vfk~~D~~YA~~lL~~Ak~ly~fa~~--~~g~y~~~~~~~~~~Y~s~~~~  204 (469)
T PLN02345        127 EKRPLTKINTSSPGSEVAAETAAAMAAASLVFKSSDSTYSDTLLKHAKQLFNFADK--YRGSYSESIPEVQDYYNSTGYG  204 (469)
T ss_pred             CcceEEecCCCCCCcHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHh--CCCcccCCCCccCCCCCCcccc
Confidence            999999986   899999999999999999999 9999999999999999999999  9999977666677899999999


Q ss_pred             hHHHHHHHHHHHHhCChhhHHHHhhcCCCCCCccccCCCCCcccCcCChHHHHHHHHhhhhhccCCCC--chHHHHHHHH
Q 013288          157 DEYMWGAAWLYYATGNVSYLSLATNSGLPKNSKAFYRIPEKSVLSWDNKLPAAMLLLTRFRIFLSPGY--PYEDMLRMYH  234 (446)
Q Consensus       157 De~~wAAaeLy~aTg~~~Y~~~a~~~~~~~~~~~~~~~~~~~~~~Wd~~~~~a~~lla~~~~~~~~~~--~~~~~~~~~~  234 (446)
                      ||++|||+|||+||||++|+++++..    +...++.......|+||+|..++++||+++....+++.  +.+..+..|+
T Consensus       205 DEl~WAAawLy~ATgd~~Yl~~~~~~----~~~~~~~~~~~~~~~WD~k~~g~~~lla~~~~~~~~~~~~~~~~~~~~y~  280 (469)
T PLN02345        205 DELLWAASWLYHATGDKTYLAYVTGK----NGKEFADWGSPTWFSWDDKLAGTQVLLSRLTFFGPKGASNTVNSGLQMYK  280 (469)
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHhh----hhhhhcccCCCceecCcchHHHHHHHHHHHhhccCccccchhhHHHHHHH
Confidence            99999999999999999999999622    11112211123469999999999999998433333221  2345678999


Q ss_pred             HHHHHHHHHHhhcCC--ccccCCCcceecCCCCCChHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCChHHHHHHHHh
Q 013288          235 NTTSLTMCSYLEQFH--VFNWTRGGMVQLNQGKPQPLQYVANAAFLASLYVDYLNASGAPGFTCGPNFITLAKLRSFATS  312 (446)
Q Consensus       235 ~~a~~~~~~~~~~~~--~~~~tp~G~~~~~~ww~gn~~~~~n~a~l~~~y~~~~~~~~~~~~~~~~~~~~~~~y~~~a~~  312 (446)
                      +.++.++|.++++..  .+++||+||.|+++|  ||+||++|++||+++|++++.....+++.|++...+..+|++||++
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~TpgGl~~~~~w--gslrya~~~afla~vya~~l~~~~~~~~~c~~~~~~~~~~~~fA~~  358 (469)
T PLN02345        281 KTAEAVMCGLLPDSPTATTSRTDGGLIWVSEW--NALQHAVNSAFLAVLYSDYMLSSGIAKLSCSGKSFKPSDLRKFAKS  358 (469)
T ss_pred             HHHHHHHHHhcCCCCCccccccCCeeEEeCCC--chHHHHHHHHHHHHHHHHHHHhcCCCccccCCCCCCHHHHHHHHHH
Confidence            999999999987643  578999999999999  9999999999999999999887777778999888899999999999


Q ss_pred             ccccccccCCCCCceEeeeCCCCCCCcccCCCCCCCCCCCcccCCCccccCCCCCCCCCccceeecCCCCCCCccccccc
Q 013288          313 QIGYILGKNPMKMSYVVGYGKQFPRHVHHRGASIPSDGKKYSCKGGWKWSNNPKPNPHNITGAMVAGPDRFDKFNDVRTN  392 (446)
Q Consensus       313 ql~YiLG~Np~g~SyVtG~G~~~p~~pHHR~s~~~~~~~~~~~~~g~~~~~~~~~~~~~l~GalvGGPn~~d~y~D~~~~  392 (446)
                      |||||||+||+++|||||||.|+|++||||+||||.. ..++|++||.|++++.||+|+|.||||||||..|.|.|+|.+
T Consensus       359 QidYiLG~NP~~~SYvVGfG~n~P~~pHHR~As~p~~-~~~~c~~g~~~~~~~~pn~~vL~GAlVGGPd~~D~y~D~r~~  437 (469)
T PLN02345        359 QADYILGKNPMKMSYLVGYGDKYPQYVHHRGASIPAD-AKTGCKDGFKWLHSSEPNPNVATGALVGGPFQNDTFVDSRDN  437 (469)
T ss_pred             HHHHHhcCCCCCcceEeecCCCCCCCcccccCCCCCC-CCcCCCCCcccccCCCCCCceeccceecCCCccCCccccccc
Confidence            9999999999999999999999999999999999875 468999999999999999999999999999999999999999


Q ss_pred             cccccccccCchHHHHHHHHhhc
Q 013288          393 HNYTEPTLAGNAGLVAALASLTT  415 (446)
Q Consensus       393 y~~nEvaId~nA~~v~~la~l~~  415 (446)
                      |++|||++++||+||++||+|+.
T Consensus       438 y~~nEva~y~nA~~vg~la~l~~  460 (469)
T PLN02345        438 SMQNEPTTYNSALLVGLLSSLVT  460 (469)
T ss_pred             cccccceeehhhHHHHHHHHHhc
Confidence            99999998888999999999995

>PLN02340 endoglucanase Back     alignment and domain information
>PLN00119 endoglucanase Back     alignment and domain information
>PLN02171 endoglucanase Back     alignment and domain information
>PLN02266 endoglucanase Back     alignment and domain information
>PLN02420 endoglucanase Back     alignment and domain information
>PLN02909 Endoglucanase Back     alignment and domain information
>PLN02308 endoglucanase Back     alignment and domain information
>PLN02613 endoglucanase Back     alignment and domain information
>PLN02175 endoglucanase Back     alignment and domain information
>PLN03009 cellulase Back     alignment and domain information
>PF00759 Glyco_hydro_9: Glycosyl hydrolase family 9; InterPro: IPR001701 O-Glycosyl hydrolases 3 Back     alignment and domain information
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid Back     alignment and domain information
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3 Back     alignment and domain information
>KOG2787 consensus Lanthionine synthetase C-like protein 1 [Defense mechanisms] Back     alignment and domain information
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid Back     alignment and domain information
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5 Back     alignment and domain information
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function Back     alignment and domain information
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query446
1ks8_A433 The Structure Of Endoglucanase From Termite, Nasuti 2e-39
2xfg_A466 Reassembly And Co-Crystallization Of A Family 9 Pro 2e-31
1js4_A 605 EndoEXOCELLULASE:CELLOBIOSE FROM THERMOMONOSPORA Le 1e-28
1ia6_A441 Crystal Structure Of The Cellulase Cel9m Of C. Cell 8e-28
2yik_A611 Catalytic Domain Of Clostridium Thermocellum Celt L 6e-25
4dod_A475 The Structure Of Cbescii Cela Gh9 Module Length = 4 6e-25
1ga2_A 614 The Crystal Structure Of Endoglucanase 9g From Clos 6e-23
1k72_A 614 The X-ray Crystal Structure Of Cel9g Complexed With 6e-23
>pdb|1KS8|A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes Takasagoensis, At Ph 2.5. Length = 433 Back     alignment and structure 
Iteration: 1

 Score =  159 bits (403), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 124/410 (30%), Positives = 182/410 (44%), Gaps = 75/410 (18%)
Query: 1   MSFAMTMLSWSLIEYNHKYQSIGEYDHMRELIKWGTDYLLLTFNSSATKIDKIYAQVGGS 60
           M++  T+L+W LI++   Y S G  D  R+ +KW TDY +     + T  ++ Y QVG  
Sbjct: 65  MAYTATVLAWGLIDFEAGYSSAGALDDGRKAVKWATDYFI----KAHTSQNEFYGQVGQG 120
Query: 61  QNGTSEPNDHNCWQRPEDMDYPRPVQTINA---GPDLAGEMXXXXXXXSIVFKD-NTAYS 116
                   DH  W RPEDM   RP   I+    G DLAGE        SIVF++ +  YS
Sbjct: 121 D------ADHAFWGRPEDMTMARPAYKIDTSRPGSDLAGETAAALAAASIVFRNVDGTYS 174
Query: 117 RKLVKGAKTVFDFAREGGKRRPYCRGNPFIEPYYNSSGYFDEYMWGAAWLYYATGNVSYL 176
             L+  A+ +FDFA     R  Y         +Y S+ Y DE +W AAWLY AT + +YL
Sbjct: 175 NNLLTHARQLFDFANN--YRGKYSDSITDARNFYASADYRDELVWAAAWLYRATNDNTYL 232
Query: 177 SLATNSGLPKNSKAFYRIPEKSVLSWDNKLPAAMLLLTRFRIFLSPGYPYEDMLRMYHNT 236
           + A +         F        L+WD+K+    +LL +    L+    Y+D ++ Y N 
Sbjct: 233 NTAESL-----YDEFGLQNWGGGLNWDSKVSGVQVLLAK----LTNKQAYKDTVQSYVNY 283
Query: 237 TSLTMCSYLEQFHVFNWTRGGMVQLNQGKPQPLQYV---------ANAAFLASLYVDYLN 287
                                ++   Q  P+ L Y+         ANAAF+         
Sbjct: 284 ---------------------LINNQQKTPKGLLYIDMWGTLRHAANAAFIM-------- 314
Query: 288 ASGAPGFTCGPNFITLAKLRSFATSQIGYILGKNPMKMSYVVGYGKQFPRHVHHRGASIP 347
                        ++ +  R FA +QI Y LG      S+V G+G   P   HHR +S P
Sbjct: 315 ------LEAAELGLSASSYRQFAQTQIDYALGDG--GRSFVCGFGSNPPTRPHHRSSSCP 366
Query: 348 SDGKKYSCKGGWKWSNNPKPNPHNITGAMVAGPDRFDKFNDVRTNHNYTE 397
                 +C   W   N+P PN H ++GA+V GPD+ D + D R+++ + E
Sbjct: 367 P--APATCD--WNTFNSPDPNYHVLSGALVGGPDQNDNYVDDRSDYVHNE 412
>pdb|2XFG|A Chain A, Reassembly And Co-Crystallization Of A Family 9 Processive Endoglucanase From Separately Expressed Gh9 And Cbm3c Modules Length = 466 Back     alignment and structure
>pdb|1JS4|A Chain A, EndoEXOCELLULASE:CELLOBIOSE FROM THERMOMONOSPORA Length = 605 Back     alignment and structure
>pdb|1IA6|A Chain A, Crystal Structure Of The Cellulase Cel9m Of C. Cellulolyticum Length = 441 Back     alignment and structure
>pdb|2YIK|A Chain A, Catalytic Domain Of Clostridium Thermocellum Celt Length = 611 Back     alignment and structure
>pdb|4DOD|A Chain A, The Structure Of Cbescii Cela Gh9 Module Length = 475 Back     alignment and structure
>pdb|1GA2|A Chain A, The Crystal Structure Of Endoglucanase 9g From Clostridium Cellulolyticum Complexed With Cellobiose Length = 614 Back     alignment and structure
>pdb|1K72|A Chain A, The X-ray Crystal Structure Of Cel9g Complexed With Cellotriose Length = 614 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query446
2yik_A611 Endoglucanase; hydrolase; 2.10A {Clostridium therm 1e-113
1tf4_A 605 T. fusca endo/EXO-cellulase E4 catalytic domain an 1e-112
1g87_A 614 Endocellulase 9G; endoglucanase, cellulose binding 1e-112
1ia6_A441 Cellulase CEL9M; cellullase, alpha barrel, hydrola 1e-111
1ks8_A433 Endo-B-1,4-glucanase; cellulase, endoglucanase, te 1e-110
2xfg_A466 Endoglucanase 1; hydrolase-sugar binding protein c 1e-109
3gzk_A537 Cellulase; fold from GH9 from CAZY database, glyco 1e-101
1clc_A639 Endoglucanase CELD; EC: 3.2.1.4; cellulase, glycos 5e-91
1ut9_A609 Cellulose 1,4-beta-cellobiosidase; hydrolase, glyc 2e-85
3h7l_A586 Endoglucanase; dehydrogenase, PSI-2, NYSGXRC, stru 2e-50
>2yik_A Endoglucanase; hydrolase; 2.10A {Clostridium thermocellum} Length = 611 Back     alignment and structure
 Score =  343 bits (882), Expect = e-113
 Identities = 117/461 (25%), Positives = 185/461 (40%), Gaps = 57/461 (12%)

Query: 1   MSFAMTMLSWSLIEYNHKYQSIGEYDHMRELIKWGTDYLLL-TFNSSATKIDKIYAQVGG 59
            ++A + + W   E+  ++++ G+  H   ++++  DY +  TF  ++  +     QVG 
Sbjct: 127 EAYAASTVGWGYYEFKDQFRATGQAVHAEVILRYFNDYFMRCTFRDASGNVVAFCHQVG- 185

Query: 60  SQNGTSEPNDHNCWQRPEDMDYPRPVQTINA---GPDLAGEMAAALAAASIVFKD-NTAY 115
                    DH  W  PE+    R    I     G D+    AA+LA   + FKD +  Y
Sbjct: 186 -----DGDIDHAFWGAPENDTMFRRGWFITKEKPGTDIISATAASLAINYMNFKDTDPQY 240

Query: 116 SRKLVKGAKTVFDFAREGGKRRPYCRGNPFIEPYYNSSGYFDEYMWGAAWLYYATGNVSY 175
           + K +  AK +FDFA +    +   +G    + YY SS + D+Y W AAWLY AT N  Y
Sbjct: 241 AAKSLDYAKALFDFAEK--NPKGVVQGEDGPKGYYGSSKWQDDYCWAAAWLYLATQNEHY 298

Query: 176 LSLATNSGLPKNSKAFYRIPEKSVLSWDNKLPAAMLLLTRFR-IFLSPGYPYEDMLRMYH 234
           L  A            Y  P   +  W++       +L     ++      +ED  +   
Sbjct: 299 LDEAFKY-------YDYYAPPGWIHCWNDVWSGTACILAEINDLYDKDSQNFEDRYKRAS 351

Query: 235 NTTSLTMCSYLEQF---------HVFNWTRGGMVQLNQGKPQPLQYVANAAFLASLYVDY 285
           N        + +                T GG V LNQ      +Y   A  +A +Y  +
Sbjct: 352 NKNQWEQIDFWKPIQDLLDKWSGGGITVTPGGYVFLNQW--GSARYNTAAQLIALVYDKH 409

Query: 286 LNASGAPGFTCGPNFITLAKLRSFATSQIGYILGKNPMKMSYVVGYGKQFPRHVHHRGAS 345
              + +             K  ++A SQ+ Y+LGKNP+   YVVGY     ++ HHR AS
Sbjct: 410 HGDTPS-------------KYANWARSQMDYLLGKNPLNRCYVVGYSSNSVKYPHHRAAS 456

Query: 346 IPSDGKKYSCKGGWKWSNNPKPNPHNITGAMVAGPDRFDKFNDVRTNHNYTEPTLAGNAG 405
                       G K +N+  P+ + + GA+V GPD  D+  D   ++ Y E  +  NA 
Sbjct: 457 ------------GLKDANDSSPHKYVLYGALVGGPDASDQHVDRTNDYIYNEVAIDYNAA 504

Query: 406 LVAALASLTTSAGIGIDKNTMFSAIPPLYPQSPPPPPQWKP 446
            V A A L    G    +         +     P PP  + 
Sbjct: 505 FVGACAGLYRFFGDSSMQIDPSMPSHNVPVPPTPTPPDTQI 545
>1tf4_A T. fusca endo/EXO-cellulase E4 catalytic domain and cellulose-binding domain; glycosyl hydrolase, cellulose degradation; 1.90A {Thermobifida fusca} SCOP: a.102.1.2 b.2.2.2 PDB: 1js4_A 3tf4_A* 4tf4_A* Length = 605 Back     alignment and structure
>1g87_A Endocellulase 9G; endoglucanase, cellulose binding domain, (ALPH 6-helix barrel, beta barrel, hydrolase; 1.60A {Clostridium cellulolyticum} SCOP: a.102.1.2 b.2.2.2 PDB: 1ga2_A* 1k72_A* 1kfg_A* Length = 614 Back     alignment and structure
>1ia6_A Cellulase CEL9M; cellullase, alpha barrel, hydrolase; 1.80A {Clostridium cellulolyticum} SCOP: a.102.1.2 PDB: 1ia7_A* Length = 441 Back     alignment and structure
>1ks8_A Endo-B-1,4-glucanase; cellulase, endoglucanase, termite, glycosyl hydrolase, family 9, (alpha/alpha)6; 1.40A {Nasutitermes takasagoensis} SCOP: a.102.1.2 PDB: 1ksc_A 1ksd_A Length = 433 Back     alignment and structure
>2xfg_A Endoglucanase 1; hydrolase-sugar binding protein complex, family-9 glycoside hydrolase, hydrolase, sugar binding protein; 1.68A {Clostridium thermocellum} Length = 466 Back     alignment and structure
>3gzk_A Cellulase; fold from GH9 from CAZY database, glycosidase, hydrolase; 1.80A {Alicyclobacillus acidocaldarius subsp} PDB: 3ez8_A 3h2w_A* 3h3k_A* 3rx5_A* 3rx7_A* 3rx8_A* Length = 537 Back     alignment and structure
>1clc_A Endoglucanase CELD; EC: 3.2.1.4; cellulase, glycosyl hydrolase; 1.90A {Clostridium thermocellum} SCOP: a.102.1.2 b.1.18.2 Length = 639 Back     alignment and structure
>1ut9_A Cellulose 1,4-beta-cellobiosidase; hydrolase, glycoside hydrolase, family 9, cellobiohydrolase; 2.1A {Clostridium thermocellum} SCOP: a.102.1.2 b.1.18.2 PDB: 1rq5_A* Length = 609 Back     alignment and structure
>3h7l_A Endoglucanase; dehydrogenase, PSI-2, NYSGXRC, structural GEN protein structure initiative; 2.30A {Vibrio parahaemolyticus} Length = 586 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query446
1ks8_A433 Endo-B-1,4-glucanase; cellulase, endoglucanase, te 100.0
1ia6_A441 Cellulase CEL9M; cellullase, alpha barrel, hydrola 100.0
2xfg_A466 Endoglucanase 1; hydrolase-sugar binding protein c 100.0
1tf4_A 605 T. fusca endo/EXO-cellulase E4 catalytic domain an 100.0
2yik_A611 Endoglucanase; hydrolase; 2.10A {Clostridium therm 100.0
1g87_A 614 Endocellulase 9G; endoglucanase, cellulose binding 100.0
1clc_A639 Endoglucanase CELD; EC: 3.2.1.4; cellulase, glycos 100.0
3gzk_A537 Cellulase; fold from GH9 from CAZY database, glyco 100.0
1ut9_A609 Cellulose 1,4-beta-cellobiosidase; hydrolase, glyc 100.0
3h7l_A586 Endoglucanase; dehydrogenase, PSI-2, NYSGXRC, stru 100.0
2gz6_A388 N-acetyl-D-glucosamine 2-epimerase; anabaena SP. C 96.46
2gz6_A388 N-acetyl-D-glucosamine 2-epimerase; anabaena SP. C 95.73
3k7x_A349 LIN0763 protein; Q92DQ0, LKR23, NESG, structural g 94.94
3gt5_A402 N-acetylglucosamine 2-epimerase; structural genomi 92.83
3k7x_A349 LIN0763 protein; Q92DQ0, LKR23, NESG, structural g 92.26
2ahf_A377 Unsaturated glucuronyl hydrolase; alpha6/alpha6 ba 91.77
3k11_A445 Putative glycosyl hydrolase; structural genomics, 91.76
2zzr_A397 Unsaturated glucuronyl hydrolase; alpha barrel; 1. 90.41
3gt5_A402 N-acetylglucosamine 2-epimerase; structural genomi 89.81
1fp3_A402 N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barr 88.6
3pmm_A382 Putative cytoplasmic protein; structural genomics, 82.73
3pmm_A382 Putative cytoplasmic protein; structural genomics, 82.08
1fp3_A402 N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barr 81.26
>1ks8_A Endo-B-1,4-glucanase; cellulase, endoglucanase, termite, glycosyl hydrolase, family 9, (alpha/alpha)6; 1.40A {Nasutitermes takasagoensis} SCOP: a.102.1.2 PDB: 1ksc_A 1ksd_A Back     alignment and structure
Probab=100.00  E-value=1.2e-91  Score=727.34  Aligned_cols=363  Identities=37%  Similarity=0.625  Sum_probs=324.9

Q ss_pred             CchhHHHHHHHHHHhHHHHHhcCChHHHHHHHHHHHHHHHhhccccccccCeEEEEecCCCCCCCCCCCCCCCCCCCCCC
Q 013288            1 MSFAMTMLSWSLIEYNHKYQSIGEYDHMRELIKWGTDYLLLTFNSSATKIDKIYAQVGGSQNGTSEPNDHNCWQRPEDMD   80 (446)
Q Consensus         1 ~a~t~~~L~w~~~~f~~~y~~~~~~pdiLde~kwg~D~llk~~~~~~~~~g~~y~qVgd~~~~~~~~~Dh~~W~~Pe~~~   80 (446)
                      ||||+++|+|++++|++.|++.|++||||||||||+|||||||+.+    |.||+|||++..      ||.+|++||+++
T Consensus        65 ~a~t~~~L~w~~~e~~~~~~~~~~~~d~ldeikwg~D~llk~~~~~----g~~y~qVgd~~~------Dh~~w~~Pe~~~  134 (433)
T 1ks8_A           65 MAYTATVLAWGLIDFEAGYSSAGALDDGRKAVKWATDYFIKAHTSQ----NEFYGQVGQGDA------DHAFWGRPEDMT  134 (433)
T ss_dssp             HHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHCCBT----TBEEEEESCHHH------HHTCCSCGGGCC
T ss_pred             hHHHHHHHHHHHHHhHHhhhcCCchHHHHHHHHHHHHHHHHhccCC----CcEEEEeCCCCc------CCcccCCHhhCC
Confidence            6899999999999999999999999999999999999999999999    999999999887      999999999999


Q ss_pred             CCCceeeCC---CcchHHHHHHHHHHHhccccc-CCHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCccCCCCccc
Q 013288           81 YPRPVQTIN---AGPDLAGEMAAALAAASIVFK-DNTAYSRKLVKGAKTVFDFAREGGKRRPYCRGNPFIEPYYNSSGYF  156 (446)
Q Consensus        81 ~~R~~~~~~---p~sd~t~~~AAaLA~As~vfk-~D~~yA~~~L~~A~~~y~~a~~~~~p~~y~~~~~~~~g~Y~s~~~~  156 (446)
                      .+|++|.++   |+|++++++|||||+|||||| +||+||++||++||++|+||++  ||+.|.++.+..+++|+|+++.
T Consensus       135 ~~R~~y~~~~~~pgs~~a~~~AAalA~as~vfk~~D~~yA~~~L~~A~~~~~fa~~--~~~~y~~~~~~~~~~Y~ss~~~  212 (433)
T 1ks8_A          135 MARPAYKIDTSRPGSDLAGETAAALAAASIVFRNVDGTYSNNLLTHARQLFDFANN--YRGKYSDSITDARNFYASADYR  212 (433)
T ss_dssp             SCCCEEEECSSSCCHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHHH--SCCCHHHHSGGGGGTSCCCCTH
T ss_pred             CCCceeeccCCCCccHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHH--CCCcccCCCCcCCCCCCCCCcc
Confidence            999999876   999999999999999999999 9999999999999999999999  9999877666667899999999


Q ss_pred             hHHHHHHHHHHHHhCChhhHHHHhhcCCCCCCccccCCCCCcccCcCChHHHHHHHHhhhhhccCCCCchHHHHHHHHHH
Q 013288          157 DEYMWGAAWLYYATGNVSYLSLATNSGLPKNSKAFYRIPEKSVLSWDNKLPAAMLLLTRFRIFLSPGYPYEDMLRMYHNT  236 (446)
Q Consensus       157 De~~wAAaeLy~aTg~~~Y~~~a~~~~~~~~~~~~~~~~~~~~~~Wd~~~~~a~~lla~~~~~~~~~~~~~~~~~~~~~~  236 (446)
                      ||++|||+|||+||||++|+++++++.     ..++.......|+|+++..+++++|+++  ...         +.+++.
T Consensus       213 DE~~WAAa~Ly~aTgd~~Yl~~~~~~~-----~~~~~~~~~~~~~Wd~~~~g~~~lla~~--~~~---------~~~~~~  276 (433)
T 1ks8_A          213 DELVWAAAWLYRATNDNTYLNTAESLY-----DEFGLQNWGGGLNWDSKVSGVQVLLAKL--TNK---------QAYKDT  276 (433)
T ss_dssp             HHHHHHHHHHHHHHCCHHHHHHHHHHH-----HHTTGGGSCCCCCSSCCHHHHHHHHHHH--HCC---------HHHHHH
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHHH-----HhcCcCcCcCCcCccchhhHHHHHHhhc--cCh---------HHHHHH
Confidence            999999999999999999999998642     2222112245799999999999998872  221         457777


Q ss_pred             HHHHHHHHhhcCCccccCCCcceecCCCCCChHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCChHHHHHHHHhcccc
Q 013288          237 TSLTMCSYLEQFHVFNWTRGGMVQLNQGKPQPLQYVANAAFLASLYVDYLNASGAPGFTCGPNFITLAKLRSFATSQIGY  316 (446)
Q Consensus       237 a~~~~~~~~~~~~~~~~tp~G~~~~~~ww~gn~~~~~n~a~l~~~y~~~~~~~~~~~~~~~~~~~~~~~y~~~a~~ql~Y  316 (446)
                      ++.+++.++.   .+.+||+|++|...|  ||++|++|.+|++++++++.              +++.+|+++|++||||
T Consensus       277 ~~~~~~~~~~---~~~~tp~Gl~~~~~W--Gs~~~~~n~a~l~~~~~~~~--------------~~~~~y~~~A~~qldY  337 (433)
T 1ks8_A          277 VQSYVNYLIN---NQQKTPKGLLYIDMW--GTLRHAANAAFIMLEAAELG--------------LSASSYRQFAQTQIDY  337 (433)
T ss_dssp             HHHHHHHHHH---TSCBCTTSCBCCCST--THHHHHHHHHHHHHHHHHTT--------------SSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHh---cCCcCCCCceeecCC--chhHHHHHHHHHHHHHHhcC--------------CCHHHHHHHHHHhHhh
Confidence            7777777663   457899999998777  99999999999999998751              4678999999999999


Q ss_pred             ccccCCCCCceEeeeCCCCCCCcccCCCCCCCCCCCcccCCCccccCCCCCCCCCccceeecCCCCCCCccccccccccc
Q 013288          317 ILGKNPMKMSYVVGYGKQFPRHVHHRGASIPSDGKKYSCKGGWKWSNNPKPNPHNITGAMVAGPDRFDKFNDVRTNHNYT  396 (446)
Q Consensus       317 iLG~Np~g~SyVtG~G~~~p~~pHHR~s~~~~~~~~~~~~~g~~~~~~~~~~~~~l~GalvGGPn~~d~y~D~~~~y~~n  396 (446)
                      |||+|  ++|||||||+|+|++||||.++||..  +..|.  +.+.+.+.|||++|+|+||||||..|+|+|+|.+|++|
T Consensus       338 iLG~n--~~SyvvG~G~~~p~~pHHR~s~~~~~--~~~c~--~~~~~~~~pn~~~l~GalvGGP~~~d~y~D~~~~y~~n  411 (433)
T 1ks8_A          338 ALGDG--GRSFVCGFGSNPPTRPHHRSSSCPPA--PATCD--WNTFNSPDPNYHVLSGALVGGPDQNDNYVDDRSDYVHN  411 (433)
T ss_dssp             HHTTT--SSCCBTTSSSSCCSCCSCHHHHCCCT--TSCCS--HHHHTCSSCCSSCCTTCBCCCCCTTSCCCCCTTCHHHH
T ss_pred             ccCCC--CcceEeccCCCCCCCCcchhhcCCCc--ccccc--ccccCCCCCCCCCCccceecCCCcccCcCcCccccccc
Confidence            99998  78999999999999999999999864  34685  44688899999999999999999999999999999999


Q ss_pred             cccccCchHHHHHHHHhhcc
Q 013288          397 EPTLAGNAGLVAALASLTTS  416 (446)
Q Consensus       397 EvaId~nA~~v~~la~l~~~  416 (446)
                      ||||||||+||++||+|...
T Consensus       412 Evai~~NA~~v~~la~l~~~  431 (433)
T 1ks8_A          412 EVATDYNAGFQSALAALVAL  431 (433)
T ss_dssp             CCCHHHHHHHHHHHHHHHHT
T ss_pred             cccHHhHHHHHHHHHHHHhc
Confidence            99999999999999999864
>1ia6_A Cellulase CEL9M; cellullase, alpha barrel, hydrolase; 1.80A {Clostridium cellulolyticum} SCOP: a.102.1.2 PDB: 1ia7_A* Back     alignment and structure
>2xfg_A Endoglucanase 1; hydrolase-sugar binding protein complex, family-9 glycoside hydrolase, hydrolase, sugar binding protein; 1.68A {Clostridium thermocellum} Back     alignment and structure
>1tf4_A T. fusca endo/EXO-cellulase E4 catalytic domain and cellulose-binding domain; glycosyl hydrolase, cellulose degradation; 1.90A {Thermobifida fusca} SCOP: a.102.1.2 b.2.2.2 PDB: 1js4_A 3tf4_A* 4tf4_A* Back     alignment and structure
>2yik_A Endoglucanase; hydrolase; 2.10A {Clostridium thermocellum} Back     alignment and structure
>1g87_A Endocellulase 9G; endoglucanase, cellulose binding domain, (ALPH 6-helix barrel, beta barrel, hydrolase; 1.60A {Clostridium cellulolyticum} SCOP: a.102.1.2 b.2.2.2 PDB: 1ga2_A* 1k72_A* 1kfg_A* Back     alignment and structure
>1clc_A Endoglucanase CELD; EC: 3.2.1.4; cellulase, glycosyl hydrolase; 1.90A {Clostridium thermocellum} SCOP: a.102.1.2 b.1.18.2 Back     alignment and structure
>3gzk_A Cellulase; fold from GH9 from CAZY database, glycosidase, hydrolase; 1.80A {Alicyclobacillus acidocaldarius subsp} PDB: 3ez8_A 3h2w_A* 3h3k_A* 3rx5_A* 3rx7_A* 3rx8_A* Back     alignment and structure
>1ut9_A Cellulose 1,4-beta-cellobiosidase; hydrolase, glycoside hydrolase, family 9, cellobiohydrolase; 2.1A {Clostridium thermocellum} SCOP: a.102.1.2 b.1.18.2 PDB: 1rq5_A* Back     alignment and structure
>3h7l_A Endoglucanase; dehydrogenase, PSI-2, NYSGXRC, structural GEN protein structure initiative; 2.30A {Vibrio parahaemolyticus} Back     alignment and structure
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP} Back     alignment and structure
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP} Back     alignment and structure
>3k7x_A LIN0763 protein; Q92DQ0, LKR23, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.89A {Listeria innocua} Back     alignment and structure
>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa} Back     alignment and structure
>3k7x_A LIN0763 protein; Q92DQ0, LKR23, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.89A {Listeria innocua} Back     alignment and structure
>2ahf_A Unsaturated glucuronyl hydrolase; alpha6/alpha6 barrel, glycoside hydrolase family 88; 1.52A {Bacillus SP} PDB: 2ahg_A* 2fv0_A* 2fv1_A* 2d5j_A 1vd5_A 2fuz_A Back     alignment and structure
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>2zzr_A Unsaturated glucuronyl hydrolase; alpha barrel; 1.75A {Streptococcus agalactiae} PDB: 3anj_A 3ank_A* 3ani_A* Back     alignment and structure
>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa} Back     alignment and structure
>1fp3_A N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barrel, isomer; 2.00A {Sus scrofa} SCOP: a.102.1.3 Back     alignment and structure
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A Back     alignment and structure
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A Back     alignment and structure
>1fp3_A N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barrel, isomer; 2.00A {Sus scrofa} SCOP: a.102.1.3 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 446
d1tf4a1460 a.102.1.2 (A:1-460) Endo/exocellulase:cellobiose E 1e-103
d1g87a1454 a.102.1.2 (A:3-456) Endo/exocellulase:cellobiose E 8e-99
d1ia6a_431 a.102.1.2 (A:) Nonprocessive cellulase Cel9M {Clos 1e-98
d1ks8a_433 a.102.1.2 (A:) Endo-b-1,4-glucanase {Termite (Nasu 1e-96
d1ut9a1511 a.102.1.2 (A:306-816) Cellulose 1,4-beta-cellobios 3e-79
d1clca1441 a.102.1.2 (A:135-575) CelD cellulase, C-terminal d 1e-69
>d1tf4a1 a.102.1.2 (A:1-460) Endo/exocellulase:cellobiose E-4, N-terminal domain {Thermomonospora fusca [TaxId: 2021]} Length = 460 Back     information, alignment and structure

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Six-hairpin glycosidases
family: Cellulases catalytic domain
domain: Endo/exocellulase:cellobiose E-4, N-terminal domain
species: Thermomonospora fusca [TaxId: 2021]

 Score =  313 bits (803), Expect = e-103
 Identities = 129/424 (30%), Positives = 182/424 (42%), Gaps = 50/424 (11%)

Query: 1   MSFAMTMLSWSLIEYNHKYQSIGEYDHMRELIKWGTDYLLLTFNSSATKIDKIYAQVGGS 60
           M+F  TML+W  IE    Y   G+  ++++ ++W  DY +    S     + +Y QVG  
Sbjct: 66  MAFTATMLAWGAIESPEGYIRSGQMPYLKDNLRWVNDYFIKAHPSP----NVLYVQVGDG 121

Query: 61  QNGTSEPNDHNCWQRPEDMDYPRPVQTI---NAGPDLAGEMAAALAAASIVFKD-NTAYS 116
                   DH  W   E M   RP   +     G D+A E AAA+AA+SIVF D + AY+
Sbjct: 122 DA------DHKWWGPAEVMPMERPSFKVDPSCPGSDVAAETAAAMAASSIVFADDDPAYA 175

Query: 117 RKLVKGAKTVFDFAREGGKRRPYCRGNPFIEPYYNSSGYFDEYMWGAAWLYYATGNVSYL 176
             LV+ AK ++ FA     R  Y    P    Y + SGY DE +WGA WLY ATG+ SYL
Sbjct: 176 ATLVQHAKQLYTFADT--YRGVYSDCVPAGAFYNSWSGYQDELVWGAYWLYKATGDDSYL 233

Query: 177 SLAT-NSGLPKNSKAFYRIPEKSVLSWDNKLPAAMLLLTRFRIFLSPGYPYEDMLRMYHN 235
           + A          +       +  ++WD+K     +LL +              L  +  
Sbjct: 234 AKAEYEYDFLSTEQQTDLRSYRWTIAWDDKSYGTYVLLAKETGKQKYIDDANRWLDYWTV 293

Query: 236 TTSLTMCSYLEQFHVFNWTRGGMVQLNQGKPQPLQYVANAAFLASLYVDYLNASGAPGFT 295
             +     Y         + GGM  L+      L+Y AN AF+A +Y   ++        
Sbjct: 294 GVNGQRVPY---------SPGGMAVLDTW--GALRYAANTAFVALVYAKVID-------- 334

Query: 296 CGPNFITLAKLRSFATSQIGYILGKNPMKMSYVVGYGKQFPRHVHHRGASIPSDGKKYSC 355
              + +   +   FA  QI Y LG NP   SYVVG+G   PR+ HHR A           
Sbjct: 335 ---DPVRKQRYHDFAVRQINYALGDNPRNSSYVVGFGNNPPRNPHHRTAHGSWTD----- 386

Query: 356 KGGWKWSNNPKPNPHNITGAMVAGPD-RFDKFNDVRTNHNYTEPTLAGNAGLVAALASLT 414
                   +P  N H + GA+V GP    D + D R ++   E     NAG  +ALA L 
Sbjct: 387 -----SIASPAENRHVLYGALVGGPGSPNDAYTDDRQDYVANEVATDYNAGFSSALAMLV 441

Query: 415 TSAG 418
              G
Sbjct: 442 EEYG 445
>d1g87a1 a.102.1.2 (A:3-456) Endo/exocellulase:cellobiose E-4, N-terminal domain {Clostridium cellulolyticum, atcc 35319 [TaxId: 1521]} Length = 454 Back     information, alignment and structure
>d1ia6a_ a.102.1.2 (A:) Nonprocessive cellulase Cel9M {Clostridium cellulolyticum [TaxId: 1521]} Length = 431 Back     information, alignment and structure
>d1ks8a_ a.102.1.2 (A:) Endo-b-1,4-glucanase {Termite (Nasutitermes takasagoensis) [TaxId: 62960]} Length = 433 Back     information, alignment and structure
>d1ut9a1 a.102.1.2 (A:306-816) Cellulose 1,4-beta-cellobiosidase CbhA {Clostridium thermocellum [TaxId: 1515]} Length = 511 Back     information, alignment and structure
>d1clca1 a.102.1.2 (A:135-575) CelD cellulase, C-terminal domain {Clostridium thermocellum [TaxId: 1515]} Length = 441 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query446
d1tf4a1460 Endo/exocellulase:cellobiose E-4, N-terminal domai 100.0
d1ks8a_433 Endo-b-1,4-glucanase {Termite (Nasutitermes takasa 100.0
d1g87a1454 Endo/exocellulase:cellobiose E-4, N-terminal domai 100.0
d1ia6a_431 Nonprocessive cellulase Cel9M {Clostridium cellulo 100.0
d1clca1441 CelD cellulase, C-terminal domain {Clostridium the 100.0
d1ut9a1511 Cellulose 1,4-beta-cellobiosidase CbhA {Clostridiu 100.0
d2afaa1411 Putative NAG isomerase YihS {Salmonella typhimuriu 92.51
d2afaa1411 Putative NAG isomerase YihS {Salmonella typhimuriu 88.68
d1fp3a_402 N-acyl-D-glucosamine 2-epimerase {Pig (Sus scrofa) 86.62
>d1tf4a1 a.102.1.2 (A:1-460) Endo/exocellulase:cellobiose E-4, N-terminal domain {Thermomonospora fusca [TaxId: 2021]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Six-hairpin glycosidases
family: Cellulases catalytic domain
domain: Endo/exocellulase:cellobiose E-4, N-terminal domain
species: Thermomonospora fusca [TaxId: 2021]

Probab=100.00  E-value=1.9e-83  Score=670.03  Aligned_cols=372  Identities=34%  Similarity=0.536  Sum_probs=316.7

Q ss_pred             CchhHHHHHHHHHHhHHHHHhcCChHHHHHHHHHHHHHHHhhccccccccCeEEEEecCCCCCCCCCCCCCCCCCCCCCC
Q 013288            1 MSFAMTMLSWSLIEYNHKYQSIGEYDHMRELIKWGTDYLLLTFNSSATKIDKIYAQVGGSQNGTSEPNDHNCWQRPEDMD   80 (446)
Q Consensus         1 ~a~t~~~L~w~~~~f~~~y~~~~~~pdiLde~kwg~D~llk~~~~~~~~~g~~y~qVgd~~~~~~~~~Dh~~W~~Pe~~~   80 (446)
                      +|+++++|+|++++|++.|++.|++||||||+|||+|||+|||+++    |.||+|||++..      ||++|++||.++
T Consensus        66 ~a~~~~~L~~a~~~~~~~~~~~~~~pdlLdE~~wglD~llkmq~~~----g~~y~qvgdg~~------dh~~w~~~~~~~  135 (460)
T d1tf4a1          66 MAFTATMLAWGAIESPEGYIRSGQMPYLKDNLRWVNDYFIKAHPSP----NVLYVQVGDGDA------DHKWWGPAEVMP  135 (460)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHTTCHHHHHHHHHHHHHHHHHTCSBT----TBEEEEESCHHH------HHHCCSCGGGCC
T ss_pred             HHHHHHHHHHHHHHChHhhhcCCCcHHHHHHHHHHHHHHHhcccCC----CeEEEEecCCCc------cccccCCCcCCC
Confidence            4799999999999999999999999999999999999999999999    999999999877      999999999998


Q ss_pred             CCCceeeCC---CcchHHHHHHHHHHHhccccc-CCHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCccCCCCccc
Q 013288           81 YPRPVQTIN---AGPDLAGEMAAALAAASIVFK-DNTAYSRKLVKGAKTVFDFAREGGKRRPYCRGNPFIEPYYNSSGYF  156 (446)
Q Consensus        81 ~~R~~~~~~---p~sd~t~~~AAaLA~As~vfk-~D~~yA~~~L~~A~~~y~~a~~~~~p~~y~~~~~~~~g~Y~s~~~~  156 (446)
                      .+|+.+.+.   |+|++++++|||||+|||||| +||+||++||++||++|+||++  ||+.|.+..+.+..+|.++++.
T Consensus       136 ~~~~~~~~~~~~~~t~~~~~~aAalA~as~v~~~~d~~~A~~~l~aA~~a~~~a~~--~~~~~~~~~~~~~~~~~~~~~~  213 (460)
T d1tf4a1         136 MERPSFKVDPSCPGSDVAAETAAAMAASSIVFADDDPAYAATLVQHAKQLYTFADT--YRGVYSDCVPAGAFYNSWSGYQ  213 (460)
T ss_dssp             SCCCEEEEBTTBCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHH--SCCCGGGTSTTHHHHCCSSCSH
T ss_pred             CCCCcceecCCCccHHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHH--CCCCCCCCCCCCCcCCCccccc
Confidence            888887754   889999999999999999999 9999999999999999999999  9999887666555677888999


Q ss_pred             hHHHHHHHHHHHHhCChhhHHHHhhcCCC-CCCccccCCCCCcccCcCChHHHHHHHHhhhhhccCCCCchHHHHHHHHH
Q 013288          157 DEYMWGAAWLYYATGNVSYLSLATNSGLP-KNSKAFYRIPEKSVLSWDNKLPAAMLLLTRFRIFLSPGYPYEDMLRMYHN  235 (446)
Q Consensus       157 De~~wAAaeLy~aTg~~~Y~~~a~~~~~~-~~~~~~~~~~~~~~~~Wd~~~~~a~~lla~~~~~~~~~~~~~~~~~~~~~  235 (446)
                      ||++|||+|||++|||++|++++++.... ......+.......++|+++..++++++++.  ..         ...++.
T Consensus       214 De~~wAAaeLy~aTG~~~Y~~~a~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~la~~--~~---------~~~~~~  282 (460)
T d1tf4a1         214 DELVWGAYWLYKATGDDSYLAKAEYEYDFLSTEQQTDLRSYRWTIAWDDKSYGTYVLLAKE--TG---------KQKYID  282 (460)
T ss_dssp             HHHHHHHHHHHHHHCCHHHHHHHHHHGGGSCBCTTSSCBCCSSCCSSSCCHHHHHHHHHHH--HC---------CHHHHH
T ss_pred             hHHHHHHHHHHHHhCCHHHHHHHHHHhhhcccccccccccccccccccchhHHHHHHHHHH--hh---------hhHHHH
Confidence            99999999999999999999999865310 1111111122345689999998888777651  21         244566


Q ss_pred             HHHHHHHHHhhcCC--ccccCCCcceecCCCCCChHHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCChHHHHHHHHhc
Q 013288          236 TTSLTMCSYLEQFH--VFNWTRGGMVQLNQGKPQPLQYVANAAFLASLYVDYLNASGAPGFTCGPNFITLAKLRSFATSQ  313 (446)
Q Consensus       236 ~a~~~~~~~~~~~~--~~~~tp~G~~~~~~ww~gn~~~~~n~a~l~~~y~~~~~~~~~~~~~~~~~~~~~~~y~~~a~~q  313 (446)
                      .++.+++.+.....  .+.++|+++.+...|  |++++++|.+++++++++++..           .+++.+|+++|++|
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W--Gsn~~~~n~a~~~~~a~~~~~~-----------~~~~~~y~~~A~~q  349 (460)
T d1tf4a1         283 DANRWLDYWTVGVNGQRVPYSPGGMAVLDTW--GALRYAANTAFVALVYAKVIDD-----------PVRKQRYHDFAVRQ  349 (460)
T ss_dssp             HHHHHHHHTTTCBTTBCCCBCTTSCBCCCSS--SHHHHHHHHHHHHHHHHHHCCC-----------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhcccccCCcCCCcceecCCC--chHHHHHHHHHHHHHHHHHhcc-----------cCCHHHHHHHHHHh
Confidence            66677666554322  556788899888889  9999999999999999886421           23567899999999


Q ss_pred             cccccccCCCCCceEeeeCCCCCCCcccCCCCCCCCCCCcccCCCccccCCCCCCCCCccceeecCCC-CCCCccccccc
Q 013288          314 IGYILGKNPMKMSYVVGYGKQFPRHVHHRGASIPSDGKKYSCKGGWKWSNNPKPNPHNITGAMVAGPD-RFDKFNDVRTN  392 (446)
Q Consensus       314 l~YiLG~Np~g~SyVtG~G~~~p~~pHHR~s~~~~~~~~~~~~~g~~~~~~~~~~~~~l~GalvGGPn-~~d~y~D~~~~  392 (446)
                      ||||||+||+++|||||||.|+|++||||.++|+..          ++...+.||+++|+|+|||||| ..++|+|++.+
T Consensus       350 ldylLG~Np~~~SyVtG~G~~~p~~pHHR~s~~~~~----------~~~~~~~p~~~~l~G~lvGGPn~~~~~y~D~~~~  419 (460)
T d1tf4a1         350 INYALGDNPRNSSYVVGFGNNPPRNPHHRTAHGSWT----------DSIASPAENRHVLYGALVGGPGSPNDAYTDDRQD  419 (460)
T ss_dssp             HHHHHTCSTTCCCSBTTSSSSCCSCCSCHHHHTCSS----------SCTTSSSSCSSCCTTCBCCCCSSTTCCCCCCTTC
T ss_pred             hheecccCCCCcCCCccCCCCCCCCCcCccccCCCc----------cccCCCCCCCCCcceeEecCCCCCCCCcCcCcch
Confidence            999999999999999999999999999999876432          2345578899999999999998 57999999999


Q ss_pred             cccccccccCchHHHHHHHHhhccCC
Q 013288          393 HNYTEPTLAGNAGLVAALASLTTSAG  418 (446)
Q Consensus       393 y~~nEvaId~nA~~v~~la~l~~~~~  418 (446)
                      |++|||||||||+||++||+|++..+
T Consensus       420 y~~nEvai~~NA~lv~~la~l~~~~~  445 (460)
T d1tf4a1         420 YVANEVATDYNAGFSSALAMLVEEYG  445 (460)
T ss_dssp             TTTTCCCGGGGHHHHHHHHHHHHHHC
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999998864
>d1ks8a_ a.102.1.2 (A:) Endo-b-1,4-glucanase {Termite (Nasutitermes takasagoensis) [TaxId: 62960]} Back     information, alignment and structure
>d1g87a1 a.102.1.2 (A:3-456) Endo/exocellulase:cellobiose E-4, N-terminal domain {Clostridium cellulolyticum, atcc 35319 [TaxId: 1521]} Back     information, alignment and structure
>d1ia6a_ a.102.1.2 (A:) Nonprocessive cellulase Cel9M {Clostridium cellulolyticum [TaxId: 1521]} Back     information, alignment and structure
>d1clca1 a.102.1.2 (A:135-575) CelD cellulase, C-terminal domain {Clostridium thermocellum [TaxId: 1515]} Back     information, alignment and structure
>d1ut9a1 a.102.1.2 (A:306-816) Cellulose 1,4-beta-cellobiosidase CbhA {Clostridium thermocellum [TaxId: 1515]} Back     information, alignment and structure
>d2afaa1 a.102.1.3 (A:4-415) Putative NAG isomerase YihS {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d2afaa1 a.102.1.3 (A:4-415) Putative NAG isomerase YihS {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1fp3a_ a.102.1.3 (A:) N-acyl-D-glucosamine 2-epimerase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure