Citrus Sinensis ID: 013299
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 446 | 2.2.26 [Sep-21-2011] | |||||||
| Q86TV6 | 843 | Tetratricopeptide repeat | yes | no | 0.621 | 0.328 | 0.277 | 9e-08 | |
| Q9ULT0 | 858 | Tetratricopeptide repeat | no | no | 0.600 | 0.312 | 0.279 | 7e-05 | |
| Q8BGB2 | 858 | Tetratricopeptide repeat | no | no | 0.600 | 0.312 | 0.269 | 0.0001 |
| >sp|Q86TV6|TTC7B_HUMAN Tetratricopeptide repeat protein 7B OS=Homo sapiens GN=TTC7B PE=1 SV=3 | Back alignment and function desciption |
|---|
Score = 58.5 bits (140), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 83/299 (27%), Positives = 133/299 (44%), Gaps = 22/299 (7%)
Query: 132 FVPRNNIEEAILLLMI----LLRKVALKRIEWDPS-----------ILDHLSFAFSIAGD 176
F P+ N EEA+LLL+I R L RI S + D L+ A G
Sbjct: 319 FCPQENTEEALLLLLISESMANRDAVLSRIPEHKSDRLISLQSASVVYDLLTIALGRRGQ 378
Query: 177 LSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLI 236
L+ +E + ++ AL AG+ A+ +L+ + D +P L+
Sbjct: 379 YEMLSECLERAMKFAFEEFHLWYQFALSLMAAGKSARAVKVLKECIRLKPDDATIP--LL 436
Query: 237 ASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRAT 296
A+K+C EE FA ++ +G+ + ++ LG++ S Q+ A +
Sbjct: 437 AAKLCMGSLHWLEEAEKFAKTVVD-VGEKTSEFKAKGYLALGLTYSLQATDASLRGMQEV 495
Query: 297 RQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWL 356
Q KAL A A S + D + L+L+ A R++ A Y + L+L+G +
Sbjct: 496 LQRKALLAF-QRAHSLSPTDHQAAFYLALQLAISRQIPEALGYVRQALQLQG-DDANSLH 553
Query: 357 LMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLL 415
L+A +LSAQK Y DA I++ AL + E LL +K K+Q + A+ T H+L
Sbjct: 554 LLALLLSAQKHYHDALNIIDMALSEYP--ENFILLFSKVKLQSLCRGPDEALLTCKHML 610
|
Homo sapiens (taxid: 9606) |
| >sp|Q9ULT0|TTC7A_HUMAN Tetratricopeptide repeat protein 7A OS=Homo sapiens GN=TTC7A PE=1 SV=3 | Back alignment and function description |
|---|
Score = 48.9 bits (115), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 82/293 (27%), Positives = 130/293 (44%), Gaps = 25/293 (8%)
Query: 132 FVPRNNIEEAILLLMI----LLRKVALKRI---EWD--------PSILDHLSFAFSIAGD 176
+ P++NIEEA+LLL+I R V L R+ E D +I D LS G
Sbjct: 336 YCPKDNIEEALLLLLISESMATRDVVLSRVPEQEEDRTVSLQNAAAIYDLLSITLGRRGQ 395
Query: 177 LSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLI 236
L+ +E + ++ +AL G+ A++LLR + +P L+
Sbjct: 396 YVMLSECLERAMKFAFGEFHLWYQVALSMVACGKSAYAVSLLRECVKLRPSDPTVP--LM 453
Query: 237 ASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRAT 296
A+K+C EE FA + LG+ + LG++ S Q+ A +
Sbjct: 454 AAKVCIGSLRWLEEAEHFAMMVI-SLGEEAGEFLPKGYLALGLTYSLQATDATLKSKQDE 512
Query: 297 RQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWL 356
KALQ L A + ILY +SL+ A R++++A + LK+ +
Sbjct: 513 LHRKALQTLERAQQLAPSDPQVILY-VSLQLALVRQISSAMEQLQEALKVR-KDDAHALH 570
Query: 357 LMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVE 409
L+A + SAQK ++ A ++N A+ T E L+ TK K++ V LKG E
Sbjct: 571 LLALLFSAQKHHQHALDVVNMAI--TEHPENFNLMFTKVKLEQV---LKGPEE 618
|
Homo sapiens (taxid: 9606) |
| >sp|Q8BGB2|TTC7A_MOUSE Tetratricopeptide repeat protein 7A OS=Mus musculus GN=Ttc7a PE=1 SV=1 | Back alignment and function description |
|---|
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 79/293 (26%), Positives = 130/293 (44%), Gaps = 25/293 (8%)
Query: 132 FVPRNNIEEAILLLMI----LLRKVALKR-----------IEWDPSILDHLSFAFSIAGD 176
+ P++NIEEA+LLL+I R V L R ++ +I D LS G
Sbjct: 337 YCPKDNIEEALLLLLISESMATRDVVLSRAPEQAEDRKVSLQNASAIYDLLSITLGRRGQ 396
Query: 177 LSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLI 236
L+ +E + ++ +AL G+ A++LLR + +P L+
Sbjct: 397 YVMLSECLERAMKCAFGEFHLWYQVALSMVACGKSAYAVSLLRECMKLQPSDPTVP--LM 454
Query: 237 ASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRAT 296
A+K+C EE FA+ + LG+ + LG++ S Q+ A +
Sbjct: 455 AAKVCIGSLHWLEEAEHFATVVI-GLGEEAGESLPKGYLALGLTYSLQATDATLKSKQDE 513
Query: 297 RQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWL 356
KALQ L AR D I++ ++L+ A R++++A + L + +
Sbjct: 514 LHRKALQTL-ERARELAPDDPQIIFYVALQLALVRQISSAMERLQEALTM-CRDDANALH 571
Query: 357 LMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVE 409
L+A + SAQK Y+ A ++N A+ T E L+ TK K++ V LKG E
Sbjct: 572 LLALLFSAQKYYQHALDVINMAI--TEHPENFNLMFTKVKLEQV---LKGPEE 619
|
Mus musculus (taxid: 10090) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 446 | ||||||
| 255571250 | 736 | calmodulin binding protein, putative [Ri | 0.970 | 0.588 | 0.722 | 0.0 | |
| 224070164 | 638 | predicted protein [Populus trichocarpa] | 0.970 | 0.678 | 0.709 | 1e-179 | |
| 147798498 | 753 | hypothetical protein VITISV_018246 [Viti | 0.970 | 0.575 | 0.711 | 1e-177 | |
| 356537136 | 714 | PREDICTED: tetratricopeptide repeat prot | 0.979 | 0.612 | 0.702 | 1e-176 | |
| 356548083 | 712 | PREDICTED: tetratricopeptide repeat prot | 0.979 | 0.613 | 0.7 | 1e-175 | |
| 449468572 | 734 | PREDICTED: tetratricopeptide repeat prot | 0.970 | 0.589 | 0.700 | 1e-174 | |
| 356503624 | 732 | PREDICTED: tetratricopeptide repeat prot | 0.986 | 0.601 | 0.677 | 1e-173 | |
| 297744181 | 696 | unnamed protein product [Vitis vinifera] | 0.970 | 0.622 | 0.713 | 1e-172 | |
| 225438057 | 732 | PREDICTED: tetratricopeptide repeat prot | 0.970 | 0.591 | 0.713 | 1e-172 | |
| 356572278 | 717 | PREDICTED: tetratricopeptide repeat prot | 0.986 | 0.613 | 0.675 | 1e-170 |
| >gi|255571250|ref|XP_002526575.1| calmodulin binding protein, putative [Ricinus communis] gi|223534136|gb|EEF35853.1| calmodulin binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 646 bits (1666), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/433 (72%), Positives = 366/433 (84%)
Query: 1 MSIHAISLLLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQE 60
MSIHA++LLLEA+FLKAK LQ LGRF EAAQSCKVILDIVE+S EG PEN ADCKLQE
Sbjct: 147 MSIHAVNLLLEAVFLKAKSLQHLGRFNEAAQSCKVILDIVETSLPEGLPENFAADCKLQE 206
Query: 61 TLNRAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETC 120
T+N+AVELLPELWKLAD+PRE IMSYRR+LL WNLDAETTA++QK+FAIFLLY GGE
Sbjct: 207 TINKAVELLPELWKLADSPREAIMSYRRSLLHHWNLDAETTARIQKDFAIFLLYSGGEAS 266
Query: 121 PPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSL 180
PPNLRSQM SSFVPRNN+EEAILLLMILLRKV+LKRIEWD SILDHLSFA S++GDL +L
Sbjct: 267 PPNLRSQMDSSFVPRNNVEEAILLLMILLRKVSLKRIEWDESILDHLSFALSVSGDLKAL 326
Query: 181 ATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKI 240
A Q+EELLPGI+ R+E Y++LALCY+GAGEDLVALNLLR LL EDPKC+PALL+ASKI
Sbjct: 327 ANQVEELLPGIVGRREMYYMLALCYHGAGEDLVALNLLRKLLHSREDPKCVPALLMASKI 386
Query: 241 CGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAK 300
CG P LAEEG ++ RALE L GC+Q+ES NCLLG+SLSA SK+ I D +R RQ++
Sbjct: 387 CGNTPTLAEEGIKYSRRALENLESGCNQLESITNCLLGVSLSAHSKLLIADSERILRQSE 446
Query: 301 ALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMAR 360
ALQ L A ++T ++D ILY L+LE A+QRKL A +YAK LLKLE GSN+ GWLL+AR
Sbjct: 447 ALQVLELAGKTTQIQDPYILYHLTLESADQRKLEVALFYAKCLLKLENGSNINGWLLLAR 506
Query: 361 ILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQV 420
ILSAQKRY DAETI++AALDQTGKW+QGELLRT+A++Q+ QGQLK A++TY LLA LQV
Sbjct: 507 ILSAQKRYVDAETIISAALDQTGKWDQGELLRTRARLQIAQGQLKSAIKTYGQLLAILQV 566
Query: 421 QTKTFSSDKRFYK 433
QTK+F S K+ K
Sbjct: 567 QTKSFGSAKKPLK 579
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224070164|ref|XP_002303124.1| predicted protein [Populus trichocarpa] gi|222844850|gb|EEE82397.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 634 bits (1636), Expect = e-179, Method: Compositional matrix adjust.
Identities = 307/433 (70%), Positives = 364/433 (84%)
Query: 1 MSIHAISLLLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQE 60
MSIHA SLL+EAIFLKAK LQ LGRF+EAAQSCKVI+DIVESSF+EG PEN AD KLQE
Sbjct: 50 MSIHAASLLMEAIFLKAKSLQHLGRFREAAQSCKVIVDIVESSFSEGMPENFAADFKLQE 109
Query: 61 TLNRAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETC 120
TLN+AVELLPELWKLAD+PRE IMSYRRALL WNLD ETTA++QK+FAIFLLY GGE
Sbjct: 110 TLNKAVELLPELWKLADSPREAIMSYRRALLHHWNLDVETTARIQKDFAIFLLYSGGEAS 169
Query: 121 PPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSL 180
PPNLRS M SSF P++NIEEAILLLMILLRK+ L RIEWDPSILDHLSFA S++G L +L
Sbjct: 170 PPNLRSLMDSSFAPKSNIEEAILLLMILLRKMILTRIEWDPSILDHLSFALSVSGSLKAL 229
Query: 181 ATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKI 240
A Q+EELLPGII+R+ERYHIL+LCYYGAGE+LVAL+LLR LL +EDPK +PALL+ASKI
Sbjct: 230 AGQVEELLPGIIDRRERYHILSLCYYGAGEELVALDLLRKLLHSNEDPKRVPALLMASKI 289
Query: 241 CGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAK 300
CG+ AEEG +A RAL+ L + C+Q+ES AN LLG+SLSA S+VA+ D +R T+Q +
Sbjct: 290 CGKSSKHAEEGINYARRALQSLENDCNQLESVANYLLGVSLSAHSQVAVADSERFTKQYE 349
Query: 301 ALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMAR 360
AL+AL SA R T M+D +ILY LSLE AEQRKL+ A YYAK LLKLE GS ++GWLL+AR
Sbjct: 350 ALEALESAGRMTKMQDSNILYHLSLENAEQRKLDVALYYAKHLLKLESGSTIRGWLLLAR 409
Query: 361 ILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQV 420
ILSAQ+ Y+DAET++NAALDQTGKW+QGELLRTKAK+Q+ QGQL+ +E+Y LLA LQ+
Sbjct: 410 ILSAQRLYKDAETVINAALDQTGKWDQGELLRTKAKLQIAQGQLENGIESYIQLLAVLQI 469
Query: 421 QTKTFSSDKRFYK 433
Q+K+ + YK
Sbjct: 470 QSKSLGPGTKLYK 482
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147798498|emb|CAN65476.1| hypothetical protein VITISV_018246 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 627 bits (1618), Expect = e-177, Method: Compositional matrix adjust.
Identities = 308/433 (71%), Positives = 363/433 (83%)
Query: 1 MSIHAISLLLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQE 60
MSIHA+SLLLEAIFLKAK LQGLGRFKEAAQSC VILDIVESS EG N G+DCKLQE
Sbjct: 165 MSIHAVSLLLEAIFLKAKSLQGLGRFKEAAQSCNVILDIVESSLPEGLHVNFGSDCKLQE 224
Query: 61 TLNRAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETC 120
TLN+A+ELLPELWKLAD+P E I+SYRRALL WN+D ET AK+QKEFAIFLLY GGE
Sbjct: 225 TLNKAIELLPELWKLADSPHEAILSYRRALLHAWNIDVETNAKIQKEFAIFLLYSGGEAS 284
Query: 121 PPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSL 180
PP LRSQM SSFVPRNNIEEAILLL+ILLRK++L++IEWDPSILDHLS+A S++G L +L
Sbjct: 285 PPELRSQMDSSFVPRNNIEEAILLLIILLRKISLEKIEWDPSILDHLSYALSLSGGLRAL 344
Query: 181 ATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKI 240
A Q+EELLPG +NRKERYH LALCYYG G+ L ALN+L+ LLS +E+P LPALL+ASKI
Sbjct: 345 ANQVEELLPGTMNRKERYHTLALCYYGDGDSLTALNMLKKLLSNAENPNYLPALLMASKI 404
Query: 241 CGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAK 300
CGE P+ AEEG +FA RAL+ L GC++M S ANCLLGISLSA SK + D +R +RQA+
Sbjct: 405 CGENPNFAEEGISFARRALQSLQGGCEEMGSVANCLLGISLSAHSKSVVADSERVSRQAE 464
Query: 301 ALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMAR 360
AL AL +A R +RD ++Y LSLE AEQRKL+AA YYAK +KLEGGS++KGWLL+ R
Sbjct: 465 ALHALETAGRMIKVRDPKVVYHLSLENAEQRKLDAALYYAKYFIKLEGGSSVKGWLLLTR 524
Query: 361 ILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQV 420
ILSAQKR++DAE ++NAA+DQTGKW+QGELLRTKAK+Q+ +G+LK AVETYTHLLA LQV
Sbjct: 525 ILSAQKRFKDAEAVINAAIDQTGKWDQGELLRTKAKLQIARGRLKQAVETYTHLLAVLQV 584
Query: 421 QTKTFSSDKRFYK 433
Q K+F S +F K
Sbjct: 585 QRKSFGSGNKFLK 597
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356537136|ref|XP_003537086.1| PREDICTED: tetratricopeptide repeat protein 7A-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 622 bits (1605), Expect = e-176, Method: Compositional matrix adjust.
Identities = 309/440 (70%), Positives = 360/440 (81%), Gaps = 3/440 (0%)
Query: 1 MSIHAISLLLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQE 60
MSIH++ LLLEA+FLKAK LQ L RFKEAAQSCKVILDIVESS EG P+N GA+CKLQE
Sbjct: 128 MSIHSVGLLLEAVFLKAKSLQVLERFKEAAQSCKVILDIVESSLPEGMPDNFGAECKLQE 187
Query: 61 TLNRAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETC 120
TLN+AVELLPELWKLAD PRE I+SYRRALL WNLDAET AK+QKEF +FLLY GGE
Sbjct: 188 TLNKAVELLPELWKLADCPREAILSYRRALLHHWNLDAETIAKIQKEFVVFLLYSGGEAT 247
Query: 121 PPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSL 180
PPNLRSQM SFVPRNNIEEAILLLMILLRKV+L RIEWDPSILDHLSFA S++GDL++L
Sbjct: 248 PPNLRSQMDGSFVPRNNIEEAILLLMILLRKVSLNRIEWDPSILDHLSFALSVSGDLTAL 307
Query: 181 ATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKI 240
A Q+EELLP I+R ERY+ LALCYYGAG+DLVAL+LLR LL ED +P LL+ASKI
Sbjct: 308 ANQLEELLPATIHRSERYYALALCYYGAGKDLVALDLLRKLLRSREDQHHVPGLLMASKI 367
Query: 241 CGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAK 300
C E LAEEG +FA R L+ L C+Q+E+ AN LG+SLSA SK+A +D +R RQ++
Sbjct: 368 CCENSTLAEEGVSFAKRVLQNLDGRCNQLENHANFFLGVSLSAHSKLAASDSERLKRQSE 427
Query: 301 ALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMAR 360
AL AL +A R MR+ +LY LSLEYAEQRKL+AA YYAK LKLEGGSN+KGWLL+AR
Sbjct: 428 ALHALETAGR---MRNPLVLYHLSLEYAEQRKLDAAFYYAKCFLKLEGGSNVKGWLLLAR 484
Query: 361 ILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQV 420
ILSAQK++ DAE+I+N ALDQTGKW+QG+LLRTKAK+Q+ QGQL+ A+ETYT LLA LQ+
Sbjct: 485 ILSAQKQFLDAESIVNTALDQTGKWDQGDLLRTKAKLQIAQGQLRNAIETYTQLLAVLQI 544
Query: 421 QTKTFSSDKRFYKVYFMRKR 440
Q+K F S K+ YK R R
Sbjct: 545 QSKGFGSGKKLYKDNRDRAR 564
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356548083|ref|XP_003542433.1| PREDICTED: tetratricopeptide repeat protein 7A-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 619 bits (1597), Expect = e-175, Method: Compositional matrix adjust.
Identities = 308/440 (70%), Positives = 360/440 (81%), Gaps = 3/440 (0%)
Query: 1 MSIHAISLLLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQE 60
MSIH++ LLLEA+FLKAK LQ L RFKEAAQSCKVILDIVESS EG P+N GA+CKLQE
Sbjct: 126 MSIHSVGLLLEAVFLKAKSLQVLERFKEAAQSCKVILDIVESSLPEGMPDNFGAECKLQE 185
Query: 61 TLNRAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETC 120
TLN+AVELLPELWKLAD PRE I+SYRRALL WNLDAET AK+QKEFA+FLLY GGE
Sbjct: 186 TLNKAVELLPELWKLADCPREAILSYRRALLHHWNLDAETIAKIQKEFAVFLLYSGGEAT 245
Query: 121 PPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSL 180
PPNLRSQM SFVPRNNIEEAILLLMILLRKV+L RIEWDPSILDHLSFA S++GDL++L
Sbjct: 246 PPNLRSQMDGSFVPRNNIEEAILLLMILLRKVSLNRIEWDPSILDHLSFALSVSGDLTAL 305
Query: 181 ATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKI 240
A Q+EELLPG I+R ERY+ LALCYYG +DLVAL+LLR LL ED +P LL+ASKI
Sbjct: 306 ANQLEELLPGTIHRSERYYALALCYYGTSKDLVALDLLRKLLRSREDQHHVPGLLMASKI 365
Query: 241 CGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAK 300
C E LAEEG +FA + L+ L C+Q+E+ AN LG+SLSA SK+A++D DR RQ++
Sbjct: 366 CCENSTLAEEGVSFAWQVLQNLDGRCNQLENHANFFLGVSLSAHSKLAVSDSDRFKRQSE 425
Query: 301 ALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMAR 360
ALQAL +A R+ N +LY LSLEYAEQRKL+AA YYAK LKLEGGSN+KGWLL+AR
Sbjct: 426 ALQALETAGRTGNP---FVLYHLSLEYAEQRKLDAALYYAKCFLKLEGGSNVKGWLLLAR 482
Query: 361 ILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQV 420
ILSA K++ DAE+I+N ALDQTGKW+QG+LLRTKAK+Q+ QGQL+ A+ETYT LLA LQ+
Sbjct: 483 ILSALKQFLDAESIINTALDQTGKWDQGDLLRTKAKLQIAQGQLRNAIETYTQLLAVLQI 542
Query: 421 QTKTFSSDKRFYKVYFMRKR 440
Q+K F S K+ YK R R
Sbjct: 543 QSKGFGSGKKLYKENRDRAR 562
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449468572|ref|XP_004151995.1| PREDICTED: tetratricopeptide repeat protein 7B-like [Cucumis sativus] gi|449509059|ref|XP_004163481.1| PREDICTED: tetratricopeptide repeat protein 7B-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 619 bits (1595), Expect = e-174, Method: Compositional matrix adjust.
Identities = 304/434 (70%), Positives = 360/434 (82%), Gaps = 1/434 (0%)
Query: 1 MSIHAISLLLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQE 60
MS+HA+SLLLEAI LKAK L+GLGRF EAAQSCKVILDI+ESSF EG PEN GADCKLQE
Sbjct: 144 MSMHAVSLLLEAILLKAKSLEGLGRFGEAAQSCKVILDILESSFPEGLPENFGADCKLQE 203
Query: 61 TLNRAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETC 120
T+ +AVELLPELWKLADA +E I+SYRRALL WNLDAETTA++QKEFAIFLLY G E C
Sbjct: 204 TVTKAVELLPELWKLADASQEAILSYRRALLHQWNLDAETTARIQKEFAIFLLYSGSEAC 263
Query: 121 PPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSL 180
PPNLRSQM SSFVP+NNIEEAILL MILLRKV LKRI+WDPSILDHLSFA I+GD +L
Sbjct: 264 PPNLRSQMDSSFVPKNNIEEAILLFMILLRKVVLKRIDWDPSILDHLSFALIISGDTRAL 323
Query: 181 ATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKI 240
A QIEEL PGI++R+E +H LALCYYGAGE+L ALNLLR +L EDPK LPALL+ASKI
Sbjct: 324 AGQIEELPPGILHRQELHHALALCYYGAGENLTALNLLRKVLGSHEDPKSLPALLMASKI 383
Query: 241 CGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAK 300
CGE DLAEEG + A RAL+ L CDQ+E ANCLLG+SLS SK A D ++ TRQ++
Sbjct: 384 CGENCDLAEEGTSIAHRALQNLDRECDQLEGVANCLLGVSLSVYSKSATADSEKFTRQSE 443
Query: 301 ALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMAR 360
A++AL +A + T M D ++LY LSLEYA +RKL++A +YAK LKLEGGSN+K WLL+AR
Sbjct: 444 AIEALEAARKKTRMTDSNVLYHLSLEYANERKLDSALHYAKKCLKLEGGSNIKTWLLLAR 503
Query: 361 ILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQV 420
ILSAQKR+ D+E+I+NAALDQTGKW+Q ELL+TKAK+ + Q + KGA+ETY+ LLA QV
Sbjct: 504 ILSAQKRFADSESIINAALDQTGKWDQAELLQTKAKLLIAQDEFKGAIETYSQLLAFFQV 563
Query: 421 QTKTFS-SDKRFYK 433
Q+K+F+ DK+ K
Sbjct: 564 QSKSFNLGDKKLLK 577
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356503624|ref|XP_003520607.1| PREDICTED: tetratricopeptide repeat protein 7A-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 613 bits (1580), Expect = e-173, Method: Compositional matrix adjust.
Identities = 298/440 (67%), Positives = 361/440 (82%)
Query: 1 MSIHAISLLLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQE 60
MSI+ + LLLEAIFLKAKCLQ LGRFKE+AQ+CKVILDIVESS EG P+N G + KLQE
Sbjct: 146 MSIYTVGLLLEAIFLKAKCLQVLGRFKESAQTCKVILDIVESSLPEGLPQNFGHEGKLQE 205
Query: 61 TLNRAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETC 120
TL + VELLPELWKLAD+PR+ I+SYRRALL WNLDA+T AK+QKEF +FLLY GGE
Sbjct: 206 TLGKVVELLPELWKLADSPRDVILSYRRALLHQWNLDAKTIAKIQKEFVVFLLYSGGEAI 265
Query: 121 PPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSL 180
P NLRS M SSFVPRNN+EEAILLLMILLRK++L +IEWDPSILDHLSFA S++GDL++L
Sbjct: 266 PSNLRSHMDSSFVPRNNLEEAILLLMILLRKISLNKIEWDPSILDHLSFALSVSGDLTTL 325
Query: 181 ATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKI 240
A Q EELLPG INR+ERYH L+LCYYGAG DLVALNLLR LLS EDPK +P+LL+ASKI
Sbjct: 326 AHQWEELLPGTINRRERYHALSLCYYGAGNDLVALNLLRKLLSSREDPKHVPSLLMASKI 385
Query: 241 CGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAK 300
C E PDLA++GA+ A + LE L CD++ES ++CLLG+SLSA SK+ I++ +R +Q++
Sbjct: 386 CSENPDLAKDGASLARKVLENLDGRCDRLESLSSCLLGVSLSAHSKIDISNSERVEKQSE 445
Query: 301 ALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMAR 360
AL +L +A++ T M + ++Y LSLE AEQRKL+AA +YAK L LE GSN+KGWLL+AR
Sbjct: 446 ALHSLETASKVTKMSNPLVIYYLSLECAEQRKLDAALHYAKCFLNLEVGSNIKGWLLLAR 505
Query: 361 ILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQV 420
ILSAQK++ DAE+I+N AL+QTG W+QGELLRTKAK+Q+ QGQLK A+ETYT LLA L V
Sbjct: 506 ILSAQKQFLDAESIVNEALNQTGIWDQGELLRTKAKLQIAQGQLKSAIETYTQLLAILLV 565
Query: 421 QTKTFSSDKRFYKVYFMRKR 440
Q KTF S K+ YK Y R
Sbjct: 566 QRKTFGSKKKLYKDYIDHAR 585
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297744181|emb|CBI37151.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 612 bits (1577), Expect = e-172, Method: Compositional matrix adjust.
Identities = 309/433 (71%), Positives = 363/433 (83%)
Query: 1 MSIHAISLLLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQE 60
MSIHA+SLLLEAIFLKAK LQGLGRFKEAAQSC VILDIVESS EG N G+DCKLQE
Sbjct: 108 MSIHAVSLLLEAIFLKAKSLQGLGRFKEAAQSCNVILDIVESSLPEGLHVNFGSDCKLQE 167
Query: 61 TLNRAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETC 120
TLN+A+ELLPELWKLAD+P E I+SYRRALL WN+D ET AK+QKEFAIFLLY GGE
Sbjct: 168 TLNKAIELLPELWKLADSPHEAILSYRRALLHAWNIDVETNAKIQKEFAIFLLYSGGEAS 227
Query: 121 PPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSL 180
PP LRSQM SSFVPRNNIEEAILLL+ILLRK++L++IEWDPSILDHLS+A S++G L +L
Sbjct: 228 PPELRSQMDSSFVPRNNIEEAILLLIILLRKISLEKIEWDPSILDHLSYALSLSGGLRAL 287
Query: 181 ATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKI 240
A Q+EELLPG +NRKERYH LALCYYG G+ L ALNLL+ LLS +E+P LPALL+ASKI
Sbjct: 288 ANQVEELLPGTMNRKERYHTLALCYYGDGDSLTALNLLKKLLSNAENPNYLPALLMASKI 347
Query: 241 CGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAK 300
CGE P+ AEEG +FA RAL+ L GC++M S ANCLLGISLSA SK + D +R +RQA+
Sbjct: 348 CGENPNFAEEGISFARRALQSLQGGCEEMGSVANCLLGISLSAHSKSVVADSERVSRQAE 407
Query: 301 ALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMAR 360
AL AL +A R +RD ++Y LSLE AEQRKL+AA YYAK +KLEGGS++KGWLL+ R
Sbjct: 408 ALHALETAGRMIKVRDPKVVYHLSLENAEQRKLDAALYYAKYFIKLEGGSSVKGWLLLTR 467
Query: 361 ILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQV 420
ILSAQKR++DAE ++NAA+DQTGKW+QGELLRTKAK+Q+ +G+LK AVETYTHLLA LQV
Sbjct: 468 ILSAQKRFKDAEAVINAAIDQTGKWDQGELLRTKAKLQIARGRLKQAVETYTHLLAVLQV 527
Query: 421 QTKTFSSDKRFYK 433
Q K+F S +F K
Sbjct: 528 QRKSFGSGNKFLK 540
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225438057|ref|XP_002275620.1| PREDICTED: tetratricopeptide repeat protein 7B [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 610 bits (1574), Expect = e-172, Method: Compositional matrix adjust.
Identities = 309/433 (71%), Positives = 363/433 (83%)
Query: 1 MSIHAISLLLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQE 60
MSIHA+SLLLEAIFLKAK LQGLGRFKEAAQSC VILDIVESS EG N G+DCKLQE
Sbjct: 144 MSIHAVSLLLEAIFLKAKSLQGLGRFKEAAQSCNVILDIVESSLPEGLHVNFGSDCKLQE 203
Query: 61 TLNRAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETC 120
TLN+A+ELLPELWKLAD+P E I+SYRRALL WN+D ET AK+QKEFAIFLLY GGE
Sbjct: 204 TLNKAIELLPELWKLADSPHEAILSYRRALLHAWNIDVETNAKIQKEFAIFLLYSGGEAS 263
Query: 121 PPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSL 180
PP LRSQM SSFVPRNNIEEAILLL+ILLRK++L++IEWDPSILDHLS+A S++G L +L
Sbjct: 264 PPELRSQMDSSFVPRNNIEEAILLLIILLRKISLEKIEWDPSILDHLSYALSLSGGLRAL 323
Query: 181 ATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKI 240
A Q+EELLPG +NRKERYH LALCYYG G+ L ALNLL+ LLS +E+P LPALL+ASKI
Sbjct: 324 ANQVEELLPGTMNRKERYHTLALCYYGDGDSLTALNLLKKLLSNAENPNYLPALLMASKI 383
Query: 241 CGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAK 300
CGE P+ AEEG +FA RAL+ L GC++M S ANCLLGISLSA SK + D +R +RQA+
Sbjct: 384 CGENPNFAEEGISFARRALQSLQGGCEEMGSVANCLLGISLSAHSKSVVADSERVSRQAE 443
Query: 301 ALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMAR 360
AL AL +A R +RD ++Y LSLE AEQRKL+AA YYAK +KLEGGS++KGWLL+ R
Sbjct: 444 ALHALETAGRMIKVRDPKVVYHLSLENAEQRKLDAALYYAKYFIKLEGGSSVKGWLLLTR 503
Query: 361 ILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQV 420
ILSAQKR++DAE ++NAA+DQTGKW+QGELLRTKAK+Q+ +G+LK AVETYTHLLA LQV
Sbjct: 504 ILSAQKRFKDAEAVINAAIDQTGKWDQGELLRTKAKLQIARGRLKQAVETYTHLLAVLQV 563
Query: 421 QTKTFSSDKRFYK 433
Q K+F S +F K
Sbjct: 564 QRKSFGSGNKFLK 576
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356572278|ref|XP_003554296.1| PREDICTED: tetratricopeptide repeat protein 7A-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 603 bits (1554), Expect = e-170, Method: Compositional matrix adjust.
Identities = 297/440 (67%), Positives = 359/440 (81%)
Query: 1 MSIHAISLLLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQE 60
MSI+ LLLEAIFLKAKCLQ LGRFKEAAQ+CKVILDIVESS EG P+N G + KLQE
Sbjct: 131 MSIYTAGLLLEAIFLKAKCLQVLGRFKEAAQTCKVILDIVESSLPEGLPQNFGDEGKLQE 190
Query: 61 TLNRAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETC 120
TL++ VELLPELWKLAD+PR+ I+SYRRALL NLDA+T AK+QKEF +FLLY GGE
Sbjct: 191 TLSKVVELLPELWKLADSPRDVILSYRRALLHRRNLDAKTIAKIQKEFVVFLLYSGGEAI 250
Query: 121 PPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSL 180
NLRS M SSFVPRNN+EEAILLLMILLRK++L +IEWDPSILDHLSFA S++GDL++L
Sbjct: 251 LSNLRSHMDSSFVPRNNLEEAILLLMILLRKISLNKIEWDPSILDHLSFALSVSGDLTAL 310
Query: 181 ATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKI 240
A Q EELLPG INR+ERYH L+LCYYGAG DLVALNLLR LLS EDPK +P+LL+ASKI
Sbjct: 311 AHQWEELLPGTINRRERYHALSLCYYGAGNDLVALNLLRKLLSSREDPKHVPSLLMASKI 370
Query: 241 CGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAK 300
C PDLA++GA+ A + LE L CDQ+ES ++CLLG+SLSA SK+AI++ +R +Q++
Sbjct: 371 CSMNPDLAKDGASLACKVLENLDGRCDQLESLSSCLLGVSLSAHSKIAISNSERVEKQSE 430
Query: 301 ALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMAR 360
AL +L +A++ T MR+ ++Y LSLE AEQRKL+ A +YAK L LE GSN+KGWLL+AR
Sbjct: 431 ALHSLETASKVTRMRNPPVIYYLSLECAEQRKLDVALHYAKCFLNLEAGSNIKGWLLLAR 490
Query: 361 ILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQV 420
ILSAQK++ DAE+I++ AL+QTG W+QGELLRTKAK+Q+ QGQLK A+ETYT LLA L V
Sbjct: 491 ILSAQKQFLDAESIVDEALNQTGIWDQGELLRTKAKLQIAQGQLKSAIETYTQLLAILLV 550
Query: 421 QTKTFSSDKRFYKVYFMRKR 440
Q KTF S K+ YK Y R
Sbjct: 551 QRKTFGSKKKLYKDYIDHAR 570
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 446 | ||||||
| TAIR|locus:2139860 | 739 | NPGR2 "AT4G28600" [Arabidopsis | 0.966 | 0.583 | 0.604 | 5.6e-132 | |
| TAIR|locus:2053707 | 704 | NPG1 "no pollen germination 1" | 0.943 | 0.598 | 0.482 | 2.2e-98 | |
| TAIR|locus:2016029 | 694 | NPGR1 "no pollen germination r | 0.941 | 0.605 | 0.396 | 3.9e-76 | |
| ZFIN|ZDB-GENE-070105-3 | 844 | ttc7b "tetratricopeptide repea | 0.587 | 0.310 | 0.290 | 2.8e-10 | |
| UNIPROTKB|E1C895 | 857 | E1C895 "Uncharacterized protei | 0.894 | 0.465 | 0.230 | 3.7e-10 | |
| UNIPROTKB|E1BDL2 | 858 | TTC7A "Uncharacterized protein | 0.639 | 0.332 | 0.264 | 1.6e-08 | |
| UNIPROTKB|Q9ULT0 | 858 | TTC7A "Tetratricopeptide repea | 0.636 | 0.331 | 0.263 | 5.7e-08 | |
| MGI|MGI:1920999 | 858 | Ttc7 "tetratricopeptide repeat | 0.636 | 0.331 | 0.249 | 7.4e-08 | |
| UNIPROTKB|F5H4E1 | 504 | TTC7A "Tetratricopeptide repea | 0.569 | 0.503 | 0.263 | 2e-07 | |
| UNIPROTKB|F1PM89 | 760 | TTC7A "Uncharacterized protein | 0.600 | 0.352 | 0.262 | 3.7e-07 |
| TAIR|locus:2139860 NPGR2 "AT4G28600" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1294 (460.6 bits), Expect = 5.6e-132, P = 5.6e-132
Identities = 263/435 (60%), Positives = 334/435 (76%)
Query: 1 MSIHAISLLLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQE 60
MS HA+SLL EAIFLKAK LQ LGRF+EAA+SC+VILDIVE+S AEG +N+ D KLQE
Sbjct: 153 MSKHAVSLLFEAIFLKAKSLQRLGRFQEAAESCRVILDIVETSLAEGASDNVTGDIKLQE 212
Query: 61 TLNRAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETC 120
TL +AVELLPELWKLAD+PR+ I+SYRRALL W LD ETTA++QKE+A+FLLY G E
Sbjct: 213 TLTKAVELLPELWKLADSPRDAILSYRRALLNHWKLDPETTARIQKEYAVFLLYSGEEAV 272
Query: 121 PPNLRSQMGSSFVPRNNIEEAXXXXXXXXRKVALKRIEWDPSILDHLSFAFSIAGDLSSL 180
PPNLRSQ SF+PRNN+EEA RKV LKRI WD +ILDHLSFA +IAGDL++L
Sbjct: 273 PPNLRSQTEGSFIPRNNVEEAILLLMLLLRKVNLKRISWDAAILDHLSFALTIAGDLTAL 332
Query: 181 ATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKI 240
A Q EEL P +++++E YH L+LCY GAGE LVAL LLR L S EDP LL+ASKI
Sbjct: 333 AKQFEELSPELLDQRELYHTLSLCYQGAGEGLVALGLLRKLFSEREDPNRTSGLLMASKI 392
Query: 241 CGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAK 300
CGE LAEEG +A +A+ LG C Q++ A +LGI+L+ S++A+T+ +R RQ++
Sbjct: 393 CGERSGLAEEGLDYARKAIGNLGKECSQLDGAARFVLGITLTESSRMAVTETERIARQSE 452
Query: 301 ALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMAR 360
+QAL SA TN R +++RL+LE AEQRKL++A YAK LKL S+L+ WLL+AR
Sbjct: 453 GIQALESADM-TNPR---VVHRLALENAEQRKLDSALAYAKEALKLGAESDLEVWLLLAR 508
Query: 361 ILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQV 420
+LSAQKR+ DAETI++AAL++TGKWEQG+LLR KAK++L +G++K A++TYT LLA LQV
Sbjct: 509 VLSAQKRFSDAETIVDAALNETGKWEQGKLLRLKAKLRLAKGEVKDAIKTYTQLLALLQV 568
Query: 421 QTKTFSSDKRFYKVY 435
Q+K+F+S K+ K Y
Sbjct: 569 QSKSFNSAKKLPKGY 583
|
|
| TAIR|locus:2053707 NPG1 "no pollen germination 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 977 (349.0 bits), Expect = 2.2e-98, P = 2.2e-98
Identities = 206/427 (48%), Positives = 284/427 (66%)
Query: 1 MSIHAISLLLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQE 60
+S HA +L+LEAI+LKAK LQ LGR EAA CK +LD VE F +G P+ D KLQE
Sbjct: 116 VSQHAANLVLEAIYLKAKSLQKLGRITEAAHECKSVLDSVEKIFQQGIPD-AQVDNKLQE 174
Query: 61 TLNRAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETC 120
T++ AVELLP LWK + +E I +YRRALL WNLD + A++QK+FA+FLL+ G E
Sbjct: 175 TVSHAVELLPALWKESGDYQEAISAYRRALLSQWNLDNDCCARIQKDFAVFLLHSGVEAS 234
Query: 121 PPNLRSQMGSSFVPRNNIEEAXXXXXXXXRKVALKRIEWDPSILDHLSFAFSIAGDLSSL 180
PP+L SQ+ S++PRNNIEEA +K L + +WDPS+ +HL+FA S+ + L
Sbjct: 235 PPSLGSQIEGSYIPRNNIEEAILLLMILLKKFNLGKAKWDPSVFEHLTFALSLCSQTAVL 294
Query: 181 ATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKI 240
A Q+EE++PG+ +R ER++ LAL Y AG++ A+NLLR L E P L ALL+A+K+
Sbjct: 295 AKQLEEVMPGVFSRIERWNTLALSYSAAGQNSAAVNLLRKSLHKHEQPDDLVALLLAAKL 354
Query: 241 CGEYPDLAEEGATFASRALECLGDGCDQ-MESTANCLLGISLSAQSKVAITDFDRATRQA 299
C E P LA EG +A RA+ G D+ ++ +LG+ L Q+KV +DF+R+ Q+
Sbjct: 355 CSEEPSLAAEGTGYAQRAINN-AQGMDEHLKGVGLRMLGLCLGKQAKVPTSDFERSRLQS 413
Query: 300 KALQALVSA-ARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLM 358
++L+AL A A N DL ++ L ++YAEQR L AA YAK + GGS LKGW +
Sbjct: 414 ESLKALDGAIAFEHNNPDL--IFELGVQYAEQRNLKAASRYAKEFIDATGGSVLKGWRFL 471
Query: 359 ARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAAL 418
A +LSAQ+R+ +AE + +AALD+T KW+QG LLR KAK+++ Q AVETY +LLA +
Sbjct: 472 ALVLSAQQRFSEAEVVTDAALDETAKWDQGPLLRLKAKLKISQSNPTEAVETYRYLLALV 531
Query: 419 QVQTKTF 425
Q Q K+F
Sbjct: 532 QAQRKSF 538
|
|
| TAIR|locus:2016029 NPGR1 "no pollen germination related 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 767 (275.1 bits), Expect = 3.9e-76, P = 3.9e-76
Identities = 173/436 (39%), Positives = 256/436 (58%)
Query: 1 MSIHAISLLLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQE 60
MS+H++SLLLEAI LKA+ L+ LG +KEAA+ CK+ILD+VE++ G P+ + KLQ+
Sbjct: 126 MSMHSVSLLLEAILLKARSLEELGSYKEAAEECKIILDVVENALPSGMPDGISGFAKLQD 185
Query: 61 TLNRAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETC 120
+A+ELLP LWK A ETI SYRRAL WNLD + A QK A+ LLY E C
Sbjct: 186 IFQKALELLPLLWKKAGNHHETIASYRRALSRPWNLDPQRLAVTQKSLALVLLYGSVEAC 245
Query: 121 PPNLRSQMGSSFVPRNNIEEAXXXXXXXXRKVALKRIEWDPSILDHLSFAFSIAGDLSSL 180
P ++NIEEA +K+ + I+WDP ++DHL++A S+ G L
Sbjct: 246 P-------------KDNIEEAIVLLMLLVKKMVVGDIQWDPELMDHLTYALSMTGQFEVL 292
Query: 181 ATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKC--LPALLIAS 238
A +E+ LPG+ R ER+++L+LCY AG D A+NLL+ L SE + +P LL +
Sbjct: 293 ANYLEQTLPGVYTRGERWYLLSLCYSAAGIDKAAINLLKMALGPSESRQIPHIPLLLFGA 352
Query: 239 KICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQ 298
K+C + P + +G FA R L+ + + S A+ LG+ ++ + D +R Q
Sbjct: 353 KLCSKDPKHSRDGINFAHRLLDLGNSQSEHLLSQAHKFLGVCYGNAARSSKLDSERVFLQ 412
Query: 299 AKALQALVSAA-RSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLL 357
K+L +L AA R +L +++ LS+E A QR + AA A + GG + KGW
Sbjct: 413 KKSLFSLNEAAKRGKADPELDVIFNLSVENAVQRNVQAALDGAVEYSSMVGGVSTKGWKH 472
Query: 358 MARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAA 417
+A +LSA+KR +DAE+IL+ +++ G E+ ELLR KA +Q+ Q Q K A++T + LL
Sbjct: 473 LAIVLSAEKRLKDAESILDFTMEEAGDIEKIELLRLKAVLQMAQEQPKKAMKTCSSLLGL 532
Query: 418 LQVQTKTFSSDKRFYK 433
++ Q K+ S+ K
Sbjct: 533 IRAQEKSEQSESLLQK 548
|
|
| ZFIN|ZDB-GENE-070105-3 ttc7b "tetratricopeptide repeat domain 7B" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 179 (68.1 bits), Expect = 2.8e-10, P = 2.8e-10
Identities = 84/289 (29%), Positives = 133/289 (46%)
Query: 132 FVPRNNIEEAXX----XXXXXXRKVALKRI-EWDPSILDHLSFAFSIAGDLSSLATQIE- 185
F P+ N EEA R L RI E + + L A S+ DL ++A
Sbjct: 320 FCPQENTEEALLLLLISESMANRDAVLSRIPEHNNDRIISLQSA-SLVYDLLTIALGRRG 378
Query: 186 --ELLPGIINRK-----ERYHI---LALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALL 235
E+L + R E +H+ LAL AG+ A+ +L+ + D +P L
Sbjct: 379 QYEMLSECLERAMKFAFEEFHLWFQLALSLMAAGKSARAVKVLKECIRLKPDDPTIP--L 436
Query: 236 IASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRA 295
+A K+C EEG FA ++ +G+ + + +G+ S ++ A +
Sbjct: 437 LAVKLCIGNLHWLEEGERFAKIVID-MGEKAAEFRAKGYLAIGLVYSLKATDASLRGMQE 495
Query: 296 TRQAKALQALVSAARSTNMRD-LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKG 354
Q KAL A A+S + D L++ Y L+L+ A R++ A Y + L+L+G ++
Sbjct: 496 EYQKKALSAF-QRAQSLSPTDHLAVFY-LALQLAISRQIPEALGYVRQALQLQG-DDVHS 552
Query: 355 WLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQ-LVQG 402
L+A +LSAQK Y DA I+ AL + E LL TK K++ L +G
Sbjct: 553 LHLLALLLSAQKHYHDALNIIEMALSEYP--ENFILLFTKVKLETLCRG 599
|
|
| UNIPROTKB|E1C895 E1C895 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 178 (67.7 bits), Expect = 3.7e-10, P = 3.7e-10
Identities = 96/417 (23%), Positives = 167/417 (40%)
Query: 6 ISLLLEAIFLKAKCLQ-GLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNR 64
+S LEA A G + +S + +L VE+ + F L + C E N
Sbjct: 231 LSYFLEAALQSAYVTHLKKGNIVKGVRSLREVLRTVETKATQTFKMMLLSQCNWGELYNT 290
Query: 65 AVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNL 124
E W P + ++ L + L K +++ + L
Sbjct: 291 LGEECYS-WGPCSMPTSEFSHVQESMFA---LKQSRGSHLSKSTSLYCGFYNNFLFEVVL 346
Query: 125 RSQMGSSFVPRNNIEEAXXXXXXXXRKVALKRIEWDPS-ILDHLSFAFSIAGDLSSLATQ 183
S R+ + + R V+L+ D S + D LS G L+
Sbjct: 347 MVLFSVSHANRDAVI-SRAPDQQDDRAVSLR----DASEVYDLLSITLGRRGQYVMLSEC 401
Query: 184 IEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGE 243
+E + + ++ LAL G+ A+++L+ +P L+A+K+C
Sbjct: 402 LERAMKFAFDEFHLWYQLALSMVACGKSAYAVSVLKECAKLRPTDPTVP--LLAAKVCIG 459
Query: 244 YPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQ 303
EEG FA ++ LG+ + + LG++ S Q+ A + KALQ
Sbjct: 460 SLHWLEEGEYFAKMVID-LGEDAGESLAKGYLALGLTYSLQATDATLKSTQDEYNKKALQ 518
Query: 304 ALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILS 363
L AR + D I+ LSL+ A R+++ A + + L+L ++ L+A + S
Sbjct: 519 TL-ERARELDREDHQIILYLSLQLALVRQISDAIEHLQEALQL-CKDDMNSLHLLALLFS 576
Query: 364 AQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQV 420
AQK Y+ A ++N A+ + E LL TK K++ + + A+ T H+L Q+
Sbjct: 577 AQKHYQHALEVINMAVAEYP--ESFSLLFTKVKLEWMHKGPEEALVTCRHMLQMWQM 631
|
|
| UNIPROTKB|E1BDL2 TTC7A "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 163 (62.4 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 82/310 (26%), Positives = 129/310 (41%)
Query: 132 FVPRNNIEEAXX----XXXXXXRKVALKRI---EWD--------PSILDHLSFAFSIAGD 176
+ P++NIEEA R V L R E D +I D LS G
Sbjct: 336 YCPKDNIEEALLLLLISESMATRDVVLSRTPEQEEDRAVSLQNAAAIYDLLSITLGRRGQ 395
Query: 177 LSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLI 236
L+ +E + ++ +AL G+ A++LLR + +P L+
Sbjct: 396 YVMLSECLERAMKFAFGEFHLWYQVALSMVACGKSSYAVSLLRECVKLRPSDPTVP--LM 453
Query: 237 ASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRAT 296
A+K+C EE FA + LG+ + S LG++ S Q+ A +
Sbjct: 454 AAKVCIGSLHWLEEAERFAMMVIH-LGEEAGEFLSKGYLALGLTYSLQATDATLKSKQDE 512
Query: 297 RQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWL 356
KALQ L A + ILY +SL+ A R++++A + LK+ +
Sbjct: 513 LHRKALQTLERAQQLAPGDPQVILY-VSLQLALVRQISSAMEQLQEALKV-CKDDANALH 570
Query: 357 LMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLA 416
L+A + SAQK Y+ A ++N A+ + E L+ TK K++ V LKG E
Sbjct: 571 LLALLFSAQKHYQHALDVINMAITEYP--ENFNLMFTKVKLEQV---LKGPEEALVTCRQ 625
Query: 417 ALQVQTKTFS 426
LQ+ +S
Sbjct: 626 MLQLWQTLYS 635
|
|
| UNIPROTKB|Q9ULT0 TTC7A "Tetratricopeptide repeat protein 7A" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 158 (60.7 bits), Expect = 5.7e-08, P = 5.7e-08
Identities = 82/311 (26%), Positives = 131/311 (42%)
Query: 132 FVPRNNIEEAXX----XXXXXXRKVALKRI---EWD--------PSILDHLSFAFSIAGD 176
+ P++NIEEA R V L R+ E D +I D LS G
Sbjct: 336 YCPKDNIEEALLLLLISESMATRDVVLSRVPEQEEDRTVSLQNAAAIYDLLSITLGRRGQ 395
Query: 177 LSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLI 236
L+ +E + ++ +AL G+ A++LLR + +P L+
Sbjct: 396 YVMLSECLERAMKFAFGEFHLWYQVALSMVACGKSAYAVSLLRECVKLRPSDPTVP--LM 453
Query: 237 ASKIC-GEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRA 295
A+K+C G L EE FA + LG+ + LG++ S Q+ A +
Sbjct: 454 AAKVCIGSLRWL-EEAEHFAMMVIS-LGEEAGEFLPKGYLALGLTYSLQATDATLKSKQD 511
Query: 296 TRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGW 355
KALQ L A + ILY +SL+ A R++++A + LK+ +
Sbjct: 512 ELHRKALQTLERAQQLAPSDPQVILY-VSLQLALVRQISSAMEQLQEALKVRK-DDAHAL 569
Query: 356 LLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLL 415
L+A + SAQK ++ A ++N A+ T E L+ TK K++ V LKG E
Sbjct: 570 HLLALLFSAQKHHQHALDVVNMAI--TEHPENFNLMFTKVKLEQV---LKGPEEALVTCR 624
Query: 416 AALQVQTKTFS 426
L++ +S
Sbjct: 625 QVLRLWQTLYS 635
|
|
| MGI|MGI:1920999 Ttc7 "tetratricopeptide repeat domain 7" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 157 (60.3 bits), Expect = 7.4e-08, P = 7.4e-08
Identities = 74/297 (24%), Positives = 126/297 (42%)
Query: 113 LYCGGETCPPNLRSQMGSSFVPRNNIEEAXXXXXXXXRKVALKRIEWDPSILDHLSFAFS 172
LYC + L + S + ++ + RKV+L+ +I D LS
Sbjct: 336 LYCPKDNIEEALLLLLISESMATRDVVLSRAPEQAEDRKVSLQNAS---AIYDLLSITLG 392
Query: 173 IAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLP 232
G L+ +E + ++ +AL G+ A++LLR + +P
Sbjct: 393 RRGQYVMLSECLERAMKCAFGEFHLWYQVALSMVACGKSAYAVSLLRECMKLQPSDPTVP 452
Query: 233 ALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDF 292
L+A+K+C EE FA+ + LG+ + LG++ S Q+ A
Sbjct: 453 --LMAAKVCIGSLHWLEEAEHFATVVIG-LGEEAGESLPKGYLALGLTYSLQATDATLKS 509
Query: 293 DRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNL 352
+ KALQ L AR D I++ ++L+ A R++++A + L + +
Sbjct: 510 KQDELHRKALQTL-ERARELAPDDPQIIFYVALQLALVRQISSAMERLQEALTM-CRDDA 567
Query: 353 KGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVE 409
L+A + SAQK Y+ A ++N A+ T E L+ TK K++ V LKG E
Sbjct: 568 NALHLLALLFSAQKYYQHALDVINMAI--TEHPENFNLMFTKVKLEQV---LKGPEE 619
|
|
| UNIPROTKB|F5H4E1 TTC7A "Tetratricopeptide repeat protein 7A" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 150 (57.9 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 70/266 (26%), Positives = 115/266 (43%)
Query: 162 SILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTL 221
+I D LS G L+ +E + ++ +AL G+ A++LLR
Sbjct: 27 AIYDLLSITLGRRGQYVMLSECLERAMKFAFGEFHLWYQVALSMVACGKSAYAVSLLREC 86
Query: 222 LSGSEDPKCLPALLIASKIC-GEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGIS 280
+ +P L+A+K+C G L EE FA + LG+ + LG++
Sbjct: 87 VKLRPSDPTVP--LMAAKVCIGSLRWL-EEAEHFAMMVIS-LGEEAGEFLPKGYLALGLT 142
Query: 281 LSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYA 340
S Q+ A + KALQ L A + ILY +SL+ A R++++A
Sbjct: 143 YSLQATDATLKSKQDELHRKALQTLERAQQLAPSDPQVILY-VSLQLALVRQISSAMEQL 201
Query: 341 KMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLV 400
+ LK+ + L+A + SAQK ++ A ++N A+ T E L+ TK K++ V
Sbjct: 202 QEALKVRK-DDAHALHLLALLFSAQKHHQHALDVVNMAI--TEHPENFNLMFTKVKLEQV 258
Query: 401 QGQLKGAVETYTHLLAALQVQTKTFS 426
LKG E L++ +S
Sbjct: 259 ---LKGPEEALVTCRQVLRLWQTLYS 281
|
|
| UNIPROTKB|F1PM89 TTC7A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 150 (57.9 bits), Expect = 3.7e-07, P = 3.7e-07
Identities = 77/293 (26%), Positives = 124/293 (42%)
Query: 132 FVPRNNIEEAXX----XXXXXXRKVALKRI---EWD--------PSILDHLSFAFSIAGD 176
+ P++NIEEA R V L R E D +I D LS G
Sbjct: 238 YCPKDNIEEALLLLLISESMATRDVVLSRAPEQEEDRAVSLRNAAAIYDLLSITLGRRGQ 297
Query: 177 LSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLI 236
L+ +E + ++ +AL G+ A++LLR + +P L+
Sbjct: 298 YVMLSECLERAMKFAFEEFHLWYQVALSMVACGKSAYAVSLLRECMKLRPSDPTVP--LM 355
Query: 237 ASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRAT 296
A+K+C EE FA ++ L + + S LG++ S Q+ A +
Sbjct: 356 AAKVCIGSLHWLEEAERFAMMVID-LREEAGEFLSKGYLALGLTYSLQATDATLKSKQDE 414
Query: 297 RQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWL 356
KALQ L A + ILY +SL+ A R++++A + LK+ +
Sbjct: 415 LHRKALQTLQRAQQLAPGDPQVILY-VSLQLALVRQISSAIEQLQEALKV-CRDDANALH 472
Query: 357 LMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVE 409
L+A + SAQK Y+ A ++N A+ + E L+ +K K++ V LKG E
Sbjct: 473 LLALLFSAQKHYQHALDVINMAITEYP--ENFNLMFSKVKLEQV---LKGPEE 520
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
 |
 |
 |
 |
 |
 |
 |
 |
||
 | grail3.0021037202 | hypothetical protein (638 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 446 | |||
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 100.0 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 100.0 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 100.0 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 100.0 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 100.0 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.97 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.97 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.97 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.96 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.96 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.95 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.95 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.95 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.95 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.95 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.95 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.94 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.94 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.91 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.91 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.9 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.9 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.9 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.9 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.9 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.89 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.89 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.89 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.88 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.88 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.88 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.87 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.87 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.86 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.86 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.85 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.85 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.85 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.84 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.84 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.84 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.82 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.82 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.82 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.82 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.82 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.81 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.81 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.81 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.81 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.8 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.8 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.8 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.79 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.78 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.75 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.74 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.73 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.72 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.72 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.71 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.71 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.71 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.7 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.7 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.7 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.69 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.68 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.68 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.68 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.67 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.67 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.67 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.67 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.67 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.67 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.65 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.64 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.62 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.6 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.59 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.59 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.57 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.57 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.54 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.54 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.53 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.53 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.52 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.51 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.51 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 99.48 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.48 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.46 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.44 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.42 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 99.42 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 99.39 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.39 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 99.33 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.32 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.31 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 99.31 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.31 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.31 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.29 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 99.29 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.29 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 99.27 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.27 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 99.26 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.26 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 99.25 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 99.24 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 99.24 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 99.23 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 99.22 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.21 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.21 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 99.2 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 99.19 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 99.18 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.18 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 99.18 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 99.17 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.17 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.17 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 99.16 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 99.15 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 99.15 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 99.13 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.12 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 99.12 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 99.11 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 99.11 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 99.1 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 99.1 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 99.1 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 99.09 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 99.09 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 99.07 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 99.05 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 99.05 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 99.04 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 99.02 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 99.02 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.99 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 98.96 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.95 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.94 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 98.93 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.92 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 98.88 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.87 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 98.86 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.86 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.85 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 98.84 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.84 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.83 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.83 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.83 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.81 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.81 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.8 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.8 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.8 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.8 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 98.78 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.78 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 98.72 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 98.7 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.68 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.67 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.66 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 98.64 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 98.62 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.59 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 98.58 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.58 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.56 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.54 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.53 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.49 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 98.49 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.48 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 98.45 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 98.41 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 98.37 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 98.36 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.35 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.35 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.31 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 98.29 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 98.29 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 98.29 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.28 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.28 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 98.28 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 98.27 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.27 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 98.25 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 98.25 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 98.23 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 98.2 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 98.19 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.17 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.02 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 97.99 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.97 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 97.95 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 97.93 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 97.88 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.87 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 97.85 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 97.83 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 97.82 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 97.77 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 97.77 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.77 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 97.76 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.75 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 97.75 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 97.73 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 97.71 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 97.71 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 97.66 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 97.62 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.6 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 97.57 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.56 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 97.56 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 97.5 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 97.5 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 97.49 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 97.49 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 97.48 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 97.43 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 97.4 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 97.38 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 97.35 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 97.34 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 97.33 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 97.31 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.3 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 97.28 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 97.2 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 97.19 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 97.17 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 97.11 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 97.1 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.08 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 97.01 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.0 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 96.91 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 96.87 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 96.86 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 96.82 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 96.79 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 96.77 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 96.74 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 96.69 | |
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 96.68 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 96.67 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 96.66 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 96.65 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 96.64 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 96.64 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 96.63 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 96.62 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 96.62 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.62 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 96.62 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 96.6 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 96.55 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.54 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 96.54 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 96.49 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 96.48 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 96.46 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 96.45 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 96.41 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 96.39 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 96.36 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 96.34 | |
| KOG0529 | 421 | consensus Protein geranylgeranyltransferase type I | 96.28 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 96.26 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 96.21 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 96.14 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 96.13 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 96.12 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 96.07 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 96.03 | |
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 95.91 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 95.76 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.63 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 95.57 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 95.46 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.4 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 95.39 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 95.33 | |
| KOG3783 | 546 | consensus Uncharacterized conserved protein [Funct | 95.28 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 95.11 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 95.08 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 95.07 | |
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 95.05 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 95.03 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 95.01 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 94.84 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 94.77 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 94.71 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 94.68 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 94.67 | |
| KOG0529 | 421 | consensus Protein geranylgeranyltransferase type I | 94.6 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 94.57 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 94.29 | |
| PF07720 | 36 | TPR_3: Tetratricopeptide repeat; InterPro: IPR0117 | 94.01 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 93.92 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 93.91 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 93.84 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 93.68 | |
| KOG1839 | 1236 | consensus Uncharacterized protein CLU1/cluA/TIF31 | 93.53 | |
| COG4941 | 415 | Predicted RNA polymerase sigma factor containing a | 93.22 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 93.2 | |
| COG4941 | 415 | Predicted RNA polymerase sigma factor containing a | 93.18 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 92.98 | |
| COG2912 | 269 | Uncharacterized conserved protein [Function unknow | 92.96 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 92.84 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 92.71 | |
| COG5191 | 435 | Uncharacterized conserved protein, contains HAT (H | 92.69 | |
| COG5191 | 435 | Uncharacterized conserved protein, contains HAT (H | 92.65 | |
| PF07720 | 36 | TPR_3: Tetratricopeptide repeat; InterPro: IPR0117 | 92.58 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 92.54 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 92.54 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 92.21 | |
| KOG3807 | 556 | consensus Predicted membrane protein ST7 (tumor su | 92.2 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 92.0 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 91.96 | |
| PF10516 | 38 | SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat | 91.9 | |
| PF10373 | 278 | EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP | 91.5 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 91.47 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 91.32 | |
| KOG4814 | 872 | consensus Uncharacterized conserved protein [Funct | 91.27 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 90.84 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 90.8 | |
| PF10373 | 278 | EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP | 90.77 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 90.76 | |
| COG2912 | 269 | Uncharacterized conserved protein [Function unknow | 90.35 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 90.14 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 89.84 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 89.61 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 89.37 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 89.35 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 89.19 | |
| KOG4814 | 872 | consensus Uncharacterized conserved protein [Funct | 88.73 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 88.69 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 88.59 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 88.45 | |
| PF10516 | 38 | SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat | 88.41 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 87.23 | |
| KOG4279 | 1226 | consensus Serine/threonine protein kinase [Signal | 86.44 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 85.89 | |
| PF00244 | 236 | 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14 | 85.19 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 85.03 | |
| KOG1839 | 1236 | consensus Uncharacterized protein CLU1/cluA/TIF31 | 84.3 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 83.71 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 83.38 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 83.19 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 83.07 | |
| smart00386 | 33 | HAT HAT (Half-A-TPR) repeats. Present in several R | 82.37 | |
| KOG2422 | 665 | consensus Uncharacterized conserved protein [Funct | 82.37 | |
| PRK12798 | 421 | chemotaxis protein; Reviewed | 82.16 | |
| PF11846 | 193 | DUF3366: Domain of unknown function (DUF3366); Int | 81.87 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 80.46 | |
| PF10255 | 404 | Paf67: RNA polymerase I-associated factor PAF67; I | 80.01 |
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-43 Score=339.83 Aligned_cols=374 Identities=17% Similarity=0.086 Sum_probs=327.7
Q ss_pred hhHHHHHHHHHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHH
Q 013299 3 IHAISLLLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRET 82 (446)
Q Consensus 3 ~~~~~~~~~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA 82 (446)
+|+-.-.+|+|-+.|..+..-|++++|+..|+.+|+. .|. +.+|+..+|.++..+|+.+.|
T Consensus 109 ~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel--------~p~-----------fida~inla~al~~~~~~~~a 169 (966)
T KOG4626|consen 109 IRKNPQGAEAYSNLANILKERGQLQDALALYRAAIEL--------KPK-----------FIDAYINLAAALVTQGDLELA 169 (966)
T ss_pred hhccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhc--------Cch-----------hhHHHhhHHHHHHhcCCCccc
Confidence 4445556999999999999999999999999999987 454 345777788899999999999
Q ss_pred HHHHHHHhCCCCCCChHHHHHHHHHHHHHHhhhcCCC-----------CCCccc---cccCccccCCCcHHHHHHHHHHH
Q 013299 83 IMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGET-----------CPPNLR---SQMGSSFVPRNNIEEAILLLMIL 148 (446)
Q Consensus 83 ~~~y~~al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~-----------~~~~~~---~~~~~~~~~~~~~~eA~~~l~~~ 148 (446)
...|..+|++ +|+.... ...++.++-..|... ..|.-. +.++..|..+|++..||.-+
T Consensus 170 ~~~~~~alql----nP~l~ca-~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y--- 241 (966)
T KOG4626|consen 170 VQCFFEALQL----NPDLYCA-RSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHY--- 241 (966)
T ss_pred HHHHHHHHhc----Ccchhhh-hcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHH---
Confidence 9999999999 5544321 233333322222111 123222 46788999999999999986
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCC
Q 013299 149 LRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDP 228 (446)
Q Consensus 149 ~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P 228 (446)
+.+++.+|+.+++|.+||.+|...+.+++|+.+|.+|+...|+++.++-++|.+|+++|..+-|+..|+++| +++|
T Consensus 242 --~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral--~~~P 317 (966)
T KOG4626|consen 242 --EEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRAL--ELQP 317 (966)
T ss_pred --HHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHH--hcCC
Confidence 566789999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred CChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHH
Q 013299 229 KCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSA 308 (446)
Q Consensus 229 ~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~a 308 (446)
+++.++.+++.. +.+.|+..||+.+|++++...+.+ +.+.++||.+|..+ +..++|...|+++
T Consensus 318 ~F~~Ay~NlanA-Lkd~G~V~ea~~cYnkaL~l~p~h-----adam~NLgni~~E~-----------~~~e~A~~ly~~a 380 (966)
T KOG4626|consen 318 NFPDAYNNLANA-LKDKGSVTEAVDCYNKALRLCPNH-----ADAMNNLGNIYREQ-----------GKIEEATRLYLKA 380 (966)
T ss_pred CchHHHhHHHHH-HHhccchHHHHHHHHHHHHhCCcc-----HHHHHHHHHHHHHh-----------ccchHHHHHHHHH
Confidence 999999988754 677899999999999999976654 68999999999776 4689999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcH
Q 013299 309 ARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQG 388 (446)
Q Consensus 309 l~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 388 (446)
+ +..|+.+.++.|||.+|.++|++++|+.+|+.|++++|.. +.++.++|.+|..+|+.++|++.|.+|+..+| ...
T Consensus 381 l-~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~f-Ada~~NmGnt~ke~g~v~~A~q~y~rAI~~nP--t~A 456 (966)
T KOG4626|consen 381 L-EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTF-ADALSNMGNTYKEMGDVSAAIQCYTRAIQINP--TFA 456 (966)
T ss_pred H-hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchH-HHHHHhcchHHHHhhhHHHHHHHHHHHHhcCc--HHH
Confidence 9 9999999999999999999999999999999999999999 69999999999999999999999999999999 899
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhccCCcchhhHHhhh
Q 013299 389 ELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKVYFMR 438 (446)
Q Consensus 389 ~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~ 438 (446)
+++.++|.++...|.+.+|+..|+++|.+. |+|..+|-++
T Consensus 457 eAhsNLasi~kDsGni~~AI~sY~~aLklk----------PDfpdA~cNl 496 (966)
T KOG4626|consen 457 EAHSNLASIYKDSGNIPEAIQSYRTALKLK----------PDFPDAYCNL 496 (966)
T ss_pred HHHhhHHHHhhccCCcHHHHHHHHHHHccC----------CCCchhhhHH
Confidence 999999999999999999999999999996 6777777654
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-40 Score=319.30 Aligned_cols=379 Identities=18% Similarity=0.122 Sum_probs=321.1
Q ss_pred HHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcC----------C-CCCCCC----ccccHHHHHHHHHHHhHHHHHHhC
Q 013299 13 IFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAE----------G-FPENLG----ADCKLQETLNRAVELLPELWKLAD 77 (446)
Q Consensus 13 ~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~----------~-~~~~~~----~~~~l~~~~~~a~~~l~~~~~~~g 77 (446)
....|--+++-|.|++|++-|..+-+.++...++ + ..+.++ ...+..+...+++-.+|+++...|
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg 130 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERG 130 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhc
Confidence 4556777889999999999999976543221100 0 000000 111333446788888999999999
Q ss_pred ChHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHhhhcCCCC-----------CCcc---ccccCccccCCCcHHHHHH
Q 013299 78 APRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETC-----------PPNL---RSQMGSSFVPRNNIEEAIL 143 (446)
Q Consensus 78 ~~~eA~~~y~~al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~-----------~~~~---~~~~~~~~~~~~~~~eA~~ 143 (446)
++++|+..|+.++++ +|++... ..+++..+...+.-.. .|.. .+..+.+...+|+++||..
T Consensus 131 ~~~~al~~y~~aiel----~p~fida-~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 131 QLQDALALYRAAIEL----KPKFIDA-YINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred hHHHHHHHHHHHHhc----CchhhHH-HhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHH
Confidence 999999999999999 7776543 4567777776543321 2221 1456677788899999988
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhc
Q 013299 144 LLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLS 223 (446)
Q Consensus 144 ~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~ 223 (446)
.++ .+++..|..+-+|.+||-++..+|+...|++.|++|++++|+.+++|++||.+|-+.+.+++|+.+|.+|+
T Consensus 206 cYl-----kAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl- 279 (966)
T KOG4626|consen 206 CYL-----KAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRAL- 279 (966)
T ss_pred HHH-----HHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHH-
Confidence 863 34567799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHH
Q 013299 224 GSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQ 303 (446)
Q Consensus 224 ~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~ 303 (446)
.+.|++..++-+++-++++ .|..+-||..|+|+|+. .|+ ...++.++|.++... |+..||+.
T Consensus 280 -~lrpn~A~a~gNla~iYye-qG~ldlAI~~Ykral~~-~P~----F~~Ay~NlanALkd~-----------G~V~ea~~ 341 (966)
T KOG4626|consen 280 -NLRPNHAVAHGNLACIYYE-QGLLDLAIDTYKRALEL-QPN----FPDAYNNLANALKDK-----------GSVTEAVD 341 (966)
T ss_pred -hcCCcchhhccceEEEEec-cccHHHHHHHHHHHHhc-CCC----chHHHhHHHHHHHhc-----------cchHHHHH
Confidence 9999999999988888766 69999999999999995 444 368999999999765 56899999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013299 304 ALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTG 383 (446)
Q Consensus 304 ~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 383 (446)
+|.+|+ .+.|+++++++|||.++.++|.+++|...|.+|+...|+. +.++.+||.+|..+|++++|+..|+.|+++.|
T Consensus 342 cYnkaL-~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~-aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P 419 (966)
T KOG4626|consen 342 CYNKAL-RLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEF-AAAHNNLASIYKQQGNLDDAIMCYKEALRIKP 419 (966)
T ss_pred HHHHHH-HhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhh-hhhhhhHHHHHHhcccHHHHHHHHHHHHhcCc
Confidence 999999 9999999999999999999999999999999999999999 59999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhh
Q 013299 384 KWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKT 424 (446)
Q Consensus 384 ~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~ 424 (446)
...+++.++|..+..+|+.+.|+.+|.+++.++|-..++
T Consensus 420 --~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeA 458 (966)
T KOG4626|consen 420 --TFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEA 458 (966)
T ss_pred --hHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHH
Confidence 899999999999999999999999999999998765544
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=296.38 Aligned_cols=418 Identities=42% Similarity=0.612 Sum_probs=369.7
Q ss_pred CchhHHHHHHHHHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChH
Q 013299 1 MSIHAISLLLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPR 80 (446)
Q Consensus 1 ~~~~~~~~~~~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~ 80 (446)
|+-|+..+.+++-+.+++.+.+.|++.||.+.|+.+|++.+.....+.+........+.+++..+...++.+|...+...
T Consensus 165 ~s~~~~~Le~~l~~lk~k~L~~~~~iqea~e~cr~~L~~ve~~~t~~~~~~~s~~~~l~~vl~~~~~~~~~Lw~~~~~~~ 244 (799)
T KOG4162|consen 165 MSAHGAILEAELIKLKAKSLKRLGRIQEAAEECRSVLDIVETKATQGSKDTESGALKLQEVLSRAVELLPILWKKLSGPK 244 (799)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHHHHhHHHhcCCCCch
Confidence 45578888899999999999999999999999999999999988777666433233567788889998899999999999
Q ss_pred HHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHhhcCCCC
Q 013299 81 ETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWD 160 (446)
Q Consensus 81 eA~~~y~~al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~ 160 (446)
++|..|++++..+|+.+|...+.++..++.++..++.+.. ..-......+.+.++.++++..++..+++.-....-++
T Consensus 245 ~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~--~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~~~qnd 322 (799)
T KOG4162|consen 245 EAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEV--ILLLLIEESLIPRENIEDAILSLMLLLRKLRLKKFQND 322 (799)
T ss_pred HHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHH--HHHHHHHhhccccccHHHHHHHHHHHHHHHHHhhhcch
Confidence 9999999999999999998877776666655433332211 00023346788899999999888777665555555699
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCC--CCChHHHHHHH
Q 013299 161 PSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSED--PKCLPALLIAS 238 (446)
Q Consensus 161 ~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~--P~~~~a~~~~~ 238 (446)
+.+|.++..++...|+++.+.++|++++....+..+.|+.++.++...|..-.|+..+++.+ ... |+++..+++.+
T Consensus 323 ~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~--~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 323 AAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESL--KKSEQPSDISVLLMAS 400 (799)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhc--ccccCCCcchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999 666 99999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHH
Q 013299 239 KICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLS 318 (446)
Q Consensus 239 ~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~ 318 (446)
.+|++..+..++++.|..+++.........+.+.++..+|++|..+.+.+..+++|...+.++++.+++|+ +.+|+|+.
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av-~~d~~dp~ 479 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAV-QFDPTDPL 479 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHH-hcCCCCch
Confidence 99999999999999999999996555455677899999999999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHH
Q 013299 319 ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQ 398 (446)
Q Consensus 319 a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~ 398 (446)
+.|+++.-|..+++++.|+.+.+++++++|.+...+|..++.++..++|+.+|+..++-++...| +|......+..+.
T Consensus 480 ~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~--~N~~l~~~~~~i~ 557 (799)
T KOG4162|consen 480 VIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFG--DNHVLMDGKIHIE 557 (799)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh--hhhhhchhhhhhh
Confidence 99999999999999999999999999997766579999999999999999999999999999999 8999999999999
Q ss_pred HHhCCHHHHHHHHHHHHHHHhhhhhhc
Q 013299 399 LVQGQLKGAVETYTHLLAALQVQTKTF 425 (446)
Q Consensus 399 ~~~g~~~eA~~~~~~~l~l~~~~~~~~ 425 (446)
...|+.++|+..+.+.|.+|...+++.
T Consensus 558 ~~~~~~e~~l~t~~~~L~~we~~~~~q 584 (799)
T KOG4162|consen 558 LTFNDREEALDTCIHKLALWEAEYGVQ 584 (799)
T ss_pred hhcccHHHHHHHHHHHHHHHHhhhhHh
Confidence 999999999999999999999766654
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=291.82 Aligned_cols=257 Identities=14% Similarity=0.043 Sum_probs=227.7
Q ss_pred CcHHHHHHHHHHHHHHHHhhc---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChH
Q 013299 136 NNIEEAILLLMILLRKVALKR---IEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDL 212 (446)
Q Consensus 136 ~~~~eA~~~l~~~~~~~~l~~---~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 212 (446)
+.+++|+..+ +.++.. .|....++..+|.++...|++++|+..|++++.++|+++.+|+.+|.++...|+++
T Consensus 308 ~~y~~A~~~~-----~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~ 382 (615)
T TIGR00990 308 ESYEEAARAF-----EKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPD 382 (615)
T ss_pred hhHHHHHHHH-----HHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHH
Confidence 4677888775 334443 47888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchH
Q 013299 213 VALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDF 292 (446)
Q Consensus 213 eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~ 292 (446)
+|+..|++++ ..+|+++.+++.+|.+++ ..|++++|+.+|+++++..|.+ ..+++.+|.++...
T Consensus 383 eA~~~~~~al--~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~kal~l~P~~-----~~~~~~la~~~~~~-------- 446 (615)
T TIGR00990 383 KAEEDFDKAL--KLNSEDPDIYYHRAQLHF-IKGEFAQAGKDYQKSIDLDPDF-----IFSHIQLGVTQYKE-------- 446 (615)
T ss_pred HHHHHHHHHH--HhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCccC-----HHHHHHHHHHHHHC--------
Confidence 9999999999 899999999998887755 4799999999999999965443 56788999998664
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHH------HHHHHHHHH-Hc
Q 013299 293 DRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKG------WLLMARILS-AQ 365 (446)
Q Consensus 293 ~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~------~~~la~~~~-~~ 365 (446)
|++++|+..|++++ ..+|+++.+++++|.++..+|++++|+..|++|+.++|++. .. +.+.+.++. ..
T Consensus 447 ---g~~~eA~~~~~~al-~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~-~~~~~~~~l~~~a~~~~~~~ 521 (615)
T TIGR00990 447 ---GSIASSMATFRRCK-KNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETK-PMYMNVLPLINKALALFQWK 521 (615)
T ss_pred ---CCHHHHHHHHHHHH-HhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccc-cccccHHHHHHHHHHHHHHh
Confidence 57899999999999 99999999999999999999999999999999999999753 33 233344444 47
Q ss_pred cCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Q 013299 366 KRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQV 420 (446)
Q Consensus 366 g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~ 420 (446)
|++++|+..++++++++| ++..++..+|.++..+|++++|+..|++++++.+.
T Consensus 522 ~~~~eA~~~~~kAl~l~p--~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 522 QDFIEAENLCEKALIIDP--ECDIAVATMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred hhHHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 999999999999999999 88889999999999999999999999999999864
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-31 Score=282.09 Aligned_cols=347 Identities=12% Similarity=-0.018 Sum_probs=272.3
Q ss_pred HHHHHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHH
Q 013299 9 LLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRR 88 (446)
Q Consensus 9 ~~~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~ 88 (446)
.+..+..+|.++++.|+|++|+..|.++|+. .|+. ..+..+|.+|...|++++|+..|.+
T Consensus 126 ~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~--------~p~~------------~~~~n~a~~~~~l~~~~~Ai~~~~~ 185 (615)
T TIGR00990 126 YAAKLKEKGNKAYRNKDFNKAIKLYSKAIEC--------KPDP------------VYYSNRAACHNALGDWEKVVEDTTA 185 (615)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCch------------HHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4678889999999999999999999999986 3431 2456778999999999999999999
Q ss_pred HhCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHH--------------------
Q 013299 89 ALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMIL-------------------- 148 (446)
Q Consensus 89 al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~-------------------- 148 (446)
+|+. +|++...+ ..++..+. ..|++++|+..+...
T Consensus 186 al~l----~p~~~~a~-~~~a~a~~--------------------~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~ 240 (615)
T TIGR00990 186 ALEL----DPDYSKAL-NRRANAYD--------------------GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK 240 (615)
T ss_pred HHHc----CCCCHHHH-HHHHHHHH--------------------HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence 9999 66554322 33343322 334455554322100
Q ss_pred -----HHHHHhhcCCCCHH---------------------------------HHHHHHHHHH---hcCCHHHHHHHHHhh
Q 013299 149 -----LRKVALKRIEWDPS---------------------------------ILDHLSFAFS---IAGDLSSLATQIEEL 187 (446)
Q Consensus 149 -----~~~~~l~~~p~~~~---------------------------------~~~~lg~~l~---~~~~~~~A~~~~~~a 187 (446)
....++...|.+.. .+..+|.... ..+++++|+++|+++
T Consensus 241 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~a 320 (615)
T TIGR00990 241 KFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKA 320 (615)
T ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 00112223333322 2223332221 236899999999999
Q ss_pred CCC---CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC
Q 013299 188 LPG---IINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGD 264 (446)
Q Consensus 188 l~~---~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~ 264 (446)
+.. .|+...+|+.+|.++..+|++++|+..|++++ .++|+++.+++.++.++. ..|++++|+..++++++..|.
T Consensus 321 l~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal--~l~P~~~~~~~~la~~~~-~~g~~~eA~~~~~~al~~~p~ 397 (615)
T TIGR00990 321 LDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSI--ELDPRVTQSYIKRASMNL-ELGDPDKAEEDFDKALKLNSE 397 (615)
T ss_pred HhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HcCCCcHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCC
Confidence 976 58888999999999999999999999999999 899999999998887755 478999999999999996444
Q ss_pred CcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013299 265 GCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLL 344 (446)
Q Consensus 265 ~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al 344 (446)
+ +.+++.+|.++... |++++|+.+|++++ +++|++..+++++|.++..+|++++|+..|++++
T Consensus 398 ~-----~~~~~~lg~~~~~~-----------g~~~~A~~~~~kal-~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al 460 (615)
T TIGR00990 398 D-----PDIYYHRAQLHFIK-----------GEFAQAGKDYQKSI-DLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCK 460 (615)
T ss_pred C-----HHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-HcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3 57899999998764 57899999999999 9999999999999999999999999999999999
Q ss_pred hhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCC----cHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHh
Q 013299 345 KLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWE----QGELLRTKAKVQ-LVQGQLKGAVETYTHLLAALQ 419 (446)
Q Consensus 345 ~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~----~~~~~~~~a~~~-~~~g~~~eA~~~~~~~l~l~~ 419 (446)
..+|+++ .++..+|.++..+|++++|+..|++++.+.|+.+ +...+...+.++ ...|++++|+..|++++++.|
T Consensus 461 ~~~P~~~-~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p 539 (615)
T TIGR00990 461 KNFPEAP-DVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDP 539 (615)
T ss_pred HhCCCCh-HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 9999995 9999999999999999999999999999998311 112233444444 447999999999999999865
Q ss_pred hh
Q 013299 420 VQ 421 (446)
Q Consensus 420 ~~ 421 (446)
+.
T Consensus 540 ~~ 541 (615)
T TIGR00990 540 EC 541 (615)
T ss_pred Cc
Confidence 43
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-31 Score=281.14 Aligned_cols=336 Identities=12% Similarity=-0.017 Sum_probs=287.2
Q ss_pred HHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHhCCCC
Q 013299 15 LKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRALLPCW 94 (446)
Q Consensus 15 ~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~al~~~~ 94 (446)
.-++.+...|++++|...++.++.. .|.+ ..++..+|.+....|++++|+..|+++++.
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~--------~p~~-----------~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~-- 105 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLT--------AKNG-----------RDLLRRWVISPLASSQPDAVLQVVNKLLAV-- 105 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHh--------CCCc-----------hhHHHHHhhhHhhcCCHHHHHHHHHHHHHh--
Confidence 3456778899999999999999987 4543 357888899999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhc
Q 013299 95 NLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIA 174 (446)
Q Consensus 95 ~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~ 174 (446)
+|++... ...++.. +...|++++|+..+ +.++..+|+++.++..+|.++...
T Consensus 106 --~P~~~~a-~~~la~~--------------------l~~~g~~~~Ai~~l-----~~Al~l~P~~~~a~~~la~~l~~~ 157 (656)
T PRK15174 106 --NVCQPED-VLLVASV--------------------LLKSKQYATVADLA-----EQAWLAFSGNSQIFALHLRTLVLM 157 (656)
T ss_pred --CCCChHH-HHHHHHH--------------------HHHcCCHHHHHHHH-----HHHHHhCCCcHHHHHHHHHHHHHC
Confidence 5655332 2333433 34568899999886 566788999999999999999999
Q ss_pred CCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHH
Q 013299 175 GDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATF 254 (446)
Q Consensus 175 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~ 254 (446)
|++++|++.+++++..+|+++.++..++ .+...|++++|+..+++++ ..+|............++...|++++|+..
T Consensus 158 g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l--~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~ 234 (656)
T PRK15174 158 DKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALL--PFFALERQESAGLAVDTLCAVGKYQEAIQT 234 (656)
T ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHH--hcCCCcchhHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999999999999998875 4889999999999999999 777643332222223344567999999999
Q ss_pred HHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHH----HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 013299 255 ASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQA----KALQALVSAARSTNMRDLSILYRLSLEYAEQ 330 (446)
Q Consensus 255 ~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~----eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~ 330 (446)
++++++..|.+ ..+++.+|.++...| +++ +|+..|++++ +++|+++.++.++|.++..+
T Consensus 235 ~~~al~~~p~~-----~~~~~~Lg~~l~~~G-----------~~~eA~~~A~~~~~~Al-~l~P~~~~a~~~lg~~l~~~ 297 (656)
T PRK15174 235 GESALARGLDG-----AALRRSLGLAYYQSG-----------RSREAKLQAAEHWRHAL-QFNSDNVRIVTLYADALIRT 297 (656)
T ss_pred HHHHHhcCCCC-----HHHHHHHHHHHHHcC-----------CchhhHHHHHHHHHHHH-hhCCCCHHHHHHHHHHHHHC
Confidence 99999954433 678899999997765 445 4899999999 99999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHH
Q 013299 331 RKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVET 410 (446)
Q Consensus 331 ~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~ 410 (446)
|++++|+..+++++.++|+++ .++.++|.++..+|++++|+..|++++..+| ++...+..+|.++...|++++|++.
T Consensus 298 g~~~eA~~~l~~al~l~P~~~-~a~~~La~~l~~~G~~~eA~~~l~~al~~~P--~~~~~~~~~a~al~~~G~~deA~~~ 374 (656)
T PRK15174 298 GQNEKAIPLLQQSLATHPDLP-YVRAMYARALRQVGQYTAASDEFVQLAREKG--VTSKWNRYAAAALLQAGKTSEAESV 374 (656)
T ss_pred CCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc--cchHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999999999994 9999999999999999999999999999999 7877777789999999999999999
Q ss_pred HHHHHHHHhhhh
Q 013299 411 YTHLLAALQVQT 422 (446)
Q Consensus 411 ~~~~l~l~~~~~ 422 (446)
|++++++.|++.
T Consensus 375 l~~al~~~P~~~ 386 (656)
T PRK15174 375 FEHYIQARASHL 386 (656)
T ss_pred HHHHHHhChhhc
Confidence 999999998864
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-30 Score=289.81 Aligned_cols=353 Identities=16% Similarity=0.083 Sum_probs=232.8
Q ss_pred HHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHhCCCC
Q 013299 15 LKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRALLPCW 94 (446)
Q Consensus 15 ~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~al~~~~ 94 (446)
.+|.++...|++++|+..|+++|+. .|.+ ..++..+|.+|.++|++++|+..|+++++.
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~--------~P~~-----------~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~-- 332 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRA--------NPKD-----------SEALGALGQAYSQQGDRARAVAQFEKALAL-- 332 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--------CCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 4599999999999999999999987 4543 357788999999999999999999999998
Q ss_pred CCChHHHH--HHHHHHH--HHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Q 013299 95 NLDAETTA--KLQKEFA--IFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFA 170 (446)
Q Consensus 95 ~~~~~~~~--~l~~~~a--~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~ 170 (446)
+|++.. .....+. ..... ...+..+...|++++|+..+ +.++..+|+++.++..+|.+
T Consensus 333 --~p~~~~~~~~~~ll~~~~~~~~-----------~~~g~~~~~~g~~~eA~~~~-----~~Al~~~P~~~~a~~~Lg~~ 394 (1157)
T PRK11447 333 --DPHSSNRDKWESLLKVNRYWLL-----------IQQGDAALKANNLAQAERLY-----QQARQVDNTDSYAVLGLGDV 394 (1157)
T ss_pred --CCCccchhHHHHHHHhhhHHHH-----------HHHHHHHHHCCCHHHHHHHH-----HHHHHhCCCCHHHHHHHHHH
Confidence 332211 0000000 00000 01122345678899999886 56678889999999999999
Q ss_pred HHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHH------------------------------------------HHHC
Q 013299 171 FSIAGDLSSLATQIEELLPGIINRKERYHILALC------------------------------------------YYGA 208 (446)
Q Consensus 171 l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~------------------------------------------~~~~ 208 (446)
+...|++++|++.|+++++++|++..++..++.+ +...
T Consensus 395 ~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~ 474 (1157)
T PRK11447 395 AMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQ 474 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHC
Confidence 9999999999999999999999998887766554 3457
Q ss_pred CChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhh
Q 013299 209 GEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVA 288 (446)
Q Consensus 209 g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~ 288 (446)
|++++|+..|++++ +++|+++.+++.++.++. ..|++++|+..++++++..|.+. .+++.+|..+...++..
T Consensus 475 g~~~eA~~~~~~Al--~~~P~~~~~~~~LA~~~~-~~G~~~~A~~~l~~al~~~P~~~-----~~~~a~al~l~~~~~~~ 546 (1157)
T PRK11447 475 GKWAQAAELQRQRL--ALDPGSVWLTYRLAQDLR-QAGQRSQADALMRRLAQQKPNDP-----EQVYAYGLYLSGSDRDR 546 (1157)
T ss_pred CCHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCH-----HHHHHHHHHHHhCCCHH
Confidence 99999999999999 899999998888877654 47899999999999998555442 33444443322211100
Q ss_pred h---------------------------------------------------------------chHHHHHHHHHHHHHH
Q 013299 289 I---------------------------------------------------------------TDFDRATRQAKALQAL 305 (446)
Q Consensus 289 ~---------------------------------------------------------------~~~~~~~~~~eAl~~~ 305 (446)
. ..+.+.|++++|+..|
T Consensus 547 ~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y 626 (1157)
T PRK11447 547 AALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAY 626 (1157)
T ss_pred HHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHH
Confidence 0 0012334555555555
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCC
Q 013299 306 VSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKW 385 (446)
Q Consensus 306 ~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~ 385 (446)
++++ +++|+++.+++++|.++...|++++|+..+++++..+|+++ .++..+|.++..+|++++|+..+++++...|+.
T Consensus 627 ~~al-~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~-~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~ 704 (1157)
T PRK11447 627 QRVL-TREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSL-NTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQ 704 (1157)
T ss_pred HHHH-HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCCh-HHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccC
Confidence 5555 55555555555555555555555555555555555555552 555555555555555555555555555544310
Q ss_pred -C---cHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 013299 386 -E---QGELLRTKAKVQLVQGQLKGAVETYTHLLA 416 (446)
Q Consensus 386 -~---~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~ 416 (446)
. +..++..+|.++...|++++|++.|++++.
T Consensus 705 ~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 705 PPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred CcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 0 112334445555555555555555555554
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-29 Score=278.81 Aligned_cols=368 Identities=17% Similarity=0.118 Sum_probs=259.6
Q ss_pred HHHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHh
Q 013299 11 EAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRAL 90 (446)
Q Consensus 11 ~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~al 90 (446)
..++..|.++...|++++|+..|.++++. .|.+ ..++..++.++...|++++|+..|++++
T Consensus 466 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~~~ 526 (899)
T TIGR02917 466 SLHNLLGAIYLGKGDLAKAREAFEKALSI--------EPDF-----------FPAAANLARIDIQEGNPDDAIQRFEKVL 526 (899)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhh--------CCCc-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 46777888888888888888888888765 2332 1345556677777777777777777777
Q ss_pred CCCCCCChHHHHHHHHHHHHHHhhhcCC------------CCCCccc--cccCccccCCCcHHHHHHHHHHHHHHHHhhc
Q 013299 91 LPCWNLDAETTAKLQKEFAIFLLYCGGE------------TCPPNLR--SQMGSSFVPRNNIEEAILLLMILLRKVALKR 156 (446)
Q Consensus 91 ~~~~~~~~~~~~~l~~~~a~~ll~~~~~------------~~~~~~~--~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~ 156 (446)
+. .|.+... ...++..+...+.. ..|.... ..++..+...|++++|+..+ +.++..
T Consensus 527 ~~----~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~-----~~~~~~ 596 (899)
T TIGR02917 527 TI----DPKNLRA-ILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAIL-----NEAADA 596 (899)
T ss_pred Hh----CcCcHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHH-----HHHHHc
Confidence 76 3332211 12222222211110 0111111 22334555667777777664 344556
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHH
Q 013299 157 IEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLI 236 (446)
Q Consensus 157 ~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~ 236 (446)
.|.++.+|..+|.++...|++++|+.+|+++++.+|+++.+++.+|.++...|++++|+..|++++ ..+|++..++..
T Consensus 597 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~~~ 674 (899)
T TIGR02917 597 APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRAL--ELKPDNTEAQIG 674 (899)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH--hcCCCCHHHHHH
Confidence 677777777777777777777777777777777777777777777777777777777777777777 677776666665
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhc----------------------hHHH
Q 013299 237 ASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAIT----------------------DFDR 294 (446)
Q Consensus 237 ~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~----------------------~~~~ 294 (446)
++.++. ..|++++|+..++++.+..+++ ..++..+|.++...++.... ...+
T Consensus 675 l~~~~~-~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~ 748 (899)
T TIGR02917 675 LAQLLL-AAKRTESAKKIAKSLQKQHPKA-----ALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLA 748 (899)
T ss_pred HHHHHH-HcCCHHHHHHHHHHHHhhCcCC-----hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHH
Confidence 554433 3456666666666665543322 23444455554444332110 0123
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHH
Q 013299 295 ATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETI 374 (446)
Q Consensus 295 ~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~ 374 (446)
.|++++|+..+++++ +.+|+++.+++.+|.++..+|++++|+..|++++..+|++ ..++.++|+++...|+ .+|+.+
T Consensus 749 ~g~~~~A~~~~~~~l-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~~~-~~A~~~ 825 (899)
T TIGR02917 749 SGNTAEAVKTLEAWL-KTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDN-AVVLNNLAWLYLELKD-PRALEY 825 (899)
T ss_pred CCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhcCc-HHHHHH
Confidence 567899999999999 9999999999999999999999999999999999999998 4999999999999999 889999
Q ss_pred HHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Q 013299 375 LNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQV 420 (446)
Q Consensus 375 ~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~ 420 (446)
++++++..| +++..+..+|.++...|++++|++.|++++++.|.
T Consensus 826 ~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 826 AEKALKLAP--NIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred HHHHHhhCC--CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 999999999 88899999999999999999999999999998764
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.6e-29 Score=273.70 Aligned_cols=368 Identities=16% Similarity=0.051 Sum_probs=240.6
Q ss_pred HHHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHh
Q 013299 11 EAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRAL 90 (446)
Q Consensus 11 ~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~al 90 (446)
..++..|..+...|++++|+..++++++. .|.+ ..+...+|.++...|++++|+..|++++
T Consensus 23 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 83 (899)
T TIGR02917 23 ESLIEAAKSYLQKNKYKAAIIQLKNALQK--------DPND-----------AEARFLLGKIYLALGDYAAAEKELRKAL 83 (899)
T ss_pred HHHHHHHHHHHHcCChHhHHHHHHHHHHh--------CCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 56889999999999999999999999986 4553 2577889999999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHHHhhhcCCC------------CCCccc---cccCccccCCCcHHHHHHHHHHHHHHHHhh
Q 013299 91 LPCWNLDAETTAKLQKEFAIFLLYCGGET------------CPPNLR---SQMGSSFVPRNNIEEAILLLMILLRKVALK 155 (446)
Q Consensus 91 ~~~~~~~~~~~~~l~~~~a~~ll~~~~~~------------~~~~~~---~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~ 155 (446)
+. .|.... ....++..+...+... .++... ...+..+...|++++|+..+ +.++.
T Consensus 84 ~~----~~~~~~-~~~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~-----~~a~~ 153 (899)
T TIGR02917 84 SL----GYPKNQ-VLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSY-----EQALA 153 (899)
T ss_pred Hc----CCChhh-hHHHHHHHHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHH-----HHHHh
Confidence 98 332211 1223333333222110 011111 23455677788899998876 55667
Q ss_pred cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHH
Q 013299 156 RIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALL 235 (446)
Q Consensus 156 ~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~ 235 (446)
..|+++.++..+|.++...|++++|+..++++++.+|.++.+|+.+|.++...|++++|+..|++++ ..+|+++.++.
T Consensus 154 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~--~~~p~~~~~~~ 231 (899)
T TIGR02917 154 IDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAI--ALRPNNPAVLL 231 (899)
T ss_pred cCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH--hhCCCCHHHHH
Confidence 7888888999999999999999999999999999999999999999999999999999999999999 88998888887
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhc-----------------------hH
Q 013299 236 IASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAIT-----------------------DF 292 (446)
Q Consensus 236 ~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~-----------------------~~ 292 (446)
..+.++.. .|++++|...++++++..|.+ ..+++..|.++...++.... ..
T Consensus 232 ~~~~~~~~-~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~ 305 (899)
T TIGR02917 232 ALATILIE-AGEFEEAEKHADALLKKAPNS-----PLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASE 305 (899)
T ss_pred HHHHHHHH-cCCHHHHHHHHHHHHHhCCCC-----chHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 77766544 688888888888888865443 34555556655443321000 00
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHH
Q 013299 293 DRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAE 372 (446)
Q Consensus 293 ~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~ 372 (446)
...|++++|+..|++++ ..+|+++.++..+|.++...|++++|+..+++++..+|.+ ...+..+|.++...|++++|+
T Consensus 306 ~~~g~~~~A~~~~~~~~-~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~ 383 (899)
T TIGR02917 306 YQLGNLEQAYQYLNQIL-KYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDD-PAALSLLGEAYLALGDFEKAA 383 (899)
T ss_pred HHcCCHHHHHHHHHHHH-HhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHCCCHHHHH
Confidence 12234444555555555 4455554444455555555555555555555555555544 245555555555555555555
Q ss_pred HHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Q 013299 373 TILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQ 419 (446)
Q Consensus 373 ~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~ 419 (446)
.+++++++.+| ++..+++.+|.++...|++++|++.+++++++.|
T Consensus 384 ~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 428 (899)
T TIGR02917 384 EYLAKATELDP--ENAAARTQLGISKLSQGDPSEAIADLETAAQLDP 428 (899)
T ss_pred HHHHHHHhcCC--CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCC
Confidence 55555555555 4455555555555555555555555555555443
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-29 Score=281.67 Aligned_cols=326 Identities=15% Similarity=0.024 Sum_probs=244.3
Q ss_pred HHHHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHH----HHHHHhHHHHHHhCChHHHHHH
Q 013299 10 LEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLN----RAVELLPELWKLADAPRETIMS 85 (446)
Q Consensus 10 ~~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~----~a~~~l~~~~~~~g~~~eA~~~ 85 (446)
.++++.+|.++..+|++++|+..|+++++.. |...... .....+. ......|.++...|++++|+..
T Consensus 303 ~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~--------p~~~~~~-~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~ 373 (1157)
T PRK11447 303 SEALGALGQAYSQQGDRARAVAQFEKALALD--------PHSSNRD-KWESLLKVNRYWLLIQQGDAALKANNLAQAERL 373 (1157)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCccchh-HHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 5789999999999999999999999999873 3221100 0001111 1223457788999999999999
Q ss_pred HHHHhCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHH-
Q 013299 86 YRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSIL- 164 (446)
Q Consensus 86 y~~al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~- 164 (446)
|+++++. +|.+.. ....++.++. .+|++++|+..+ +.+++.+|+++.++
T Consensus 374 ~~~Al~~----~P~~~~-a~~~Lg~~~~--------------------~~g~~~eA~~~y-----~~aL~~~p~~~~a~~ 423 (1157)
T PRK11447 374 YQQARQV----DNTDSY-AVLGLGDVAM--------------------ARKDYAAAERYY-----QQALRMDPGNTNAVR 423 (1157)
T ss_pred HHHHHHh----CCCCHH-HHHHHHHHHH--------------------HCCCHHHHHHHH-----HHHHHhCCCCHHHHH
Confidence 9999998 554332 1233444332 344555555543 33344445444443
Q ss_pred -----------------------------------------HHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHH
Q 013299 165 -----------------------------------------DHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILAL 203 (446)
Q Consensus 165 -----------------------------------------~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 203 (446)
..+|.++...|++++|++.|+++++++|+++.+++.+|.
T Consensus 424 ~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~ 503 (1157)
T PRK11447 424 GLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQ 503 (1157)
T ss_pred HHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 345566667899999999999999999999999999999
Q ss_pred HHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-----------------------
Q 013299 204 CYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALE----------------------- 260 (446)
Q Consensus 204 ~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~----------------------- 260 (446)
+|...|++++|+..|++++ ..+|+++.+++..+ +++...++.++|+.+++++..
T Consensus 504 ~~~~~G~~~~A~~~l~~al--~~~P~~~~~~~a~a-l~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a 580 (1157)
T PRK11447 504 DLRQAGQRSQADALMRRLA--QQKPNDPEQVYAYG-LYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETA 580 (1157)
T ss_pred HHHHcCCHHHHHHHHHHHH--HcCCCCHHHHHHHH-HHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHH
Confidence 9999999999999999999 89999999887665 445567788888877765321
Q ss_pred -----------------HcCCCcchhhhHHHHHhhchhHhhhhhhhc-----------------------hHHHHHHHHH
Q 013299 261 -----------------CLGDGCDQMESTANCLLGISLSAQSKVAIT-----------------------DFDRATRQAK 300 (446)
Q Consensus 261 -----------------~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~-----------------------~~~~~~~~~e 300 (446)
..|++ ..+++.+|.++...++.... -+...|++++
T Consensus 581 ~~l~~~G~~~eA~~~l~~~p~~-----~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~e 655 (1157)
T PRK11447 581 NRLRDSGKEAEAEALLRQQPPS-----TRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAA 655 (1157)
T ss_pred HHHHHCCCHHHHHHHHHhCCCC-----chHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 11111 34567778777776654321 0135688999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCH-----HHHHHHHHHHHHccCHHHHHHHH
Q 013299 301 ALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNL-----KGWLLMARILSAQKRYEDAETIL 375 (446)
Q Consensus 301 Al~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~-----~~~~~la~~~~~~g~~~eA~~~~ 375 (446)
|++.|++++ +.+|+++.++..+|.++..+|++++|+..|++++...|+++. ..+..+|.++..+|++++|+..|
T Consensus 656 A~~~l~~ll-~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y 734 (1157)
T PRK11447 656 ARAQLAKLP-ATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETY 734 (1157)
T ss_pred HHHHHHHHh-ccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999 999999999999999999999999999999999999876531 35667899999999999999999
Q ss_pred HHHHhhcC
Q 013299 376 NAALDQTG 383 (446)
Q Consensus 376 ~~al~~~p 383 (446)
++|+....
T Consensus 735 ~~Al~~~~ 742 (1157)
T PRK11447 735 KDAMVASG 742 (1157)
T ss_pred HHHHhhcC
Confidence 99987554
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-29 Score=266.20 Aligned_cols=300 Identities=14% Similarity=0.078 Sum_probs=260.5
Q ss_pred hHHHHHHhCChHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHH
Q 013299 69 LPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMIL 148 (446)
Q Consensus 69 l~~~~~~~g~~~eA~~~y~~al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~ 148 (446)
....+++.|++++|+..++.++.. .|++... ...++.. ....|++++|+..+
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~----~p~~~~~-l~~l~~~--------------------~l~~g~~~~A~~~l--- 99 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLT----AKNGRDL-LRRWVIS--------------------PLASSQPDAVLQVV--- 99 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHh----CCCchhH-HHHHhhh--------------------HhhcCCHHHHHHHH---
Confidence 345678999999999999999998 4443332 2333322 23478899999886
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCC
Q 013299 149 LRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDP 228 (446)
Q Consensus 149 ~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P 228 (446)
+.++..+|++++++..+|.++...|++++|+..|+++++++|+++.+|..+|.++...|++++|+..+++++ ..+|
T Consensus 100 --~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~--~~~P 175 (656)
T PRK15174 100 --NKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQA--QEVP 175 (656)
T ss_pred --HHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHH--HhCC
Confidence 667888999999999999999999999999999999999999999999999999999999999999999999 8999
Q ss_pred CChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHH
Q 013299 229 KCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSA 308 (446)
Q Consensus 229 ~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~a 308 (446)
+++.++...+ . +...|++++|+..++++++..+.+. ......+|.++.. .|++++|+..|+++
T Consensus 176 ~~~~a~~~~~-~-l~~~g~~~eA~~~~~~~l~~~~~~~----~~~~~~l~~~l~~-----------~g~~~eA~~~~~~a 238 (656)
T PRK15174 176 PRGDMIATCL-S-FLNKSRLPEDHDLARALLPFFALER----QESAGLAVDTLCA-----------VGKYQEAIQTGESA 238 (656)
T ss_pred CCHHHHHHHH-H-HHHcCCHHHHHHHHHHHHhcCCCcc----hhHHHHHHHHHHH-----------CCCHHHHHHHHHHH
Confidence 9998876543 3 4557999999999999998544332 1233455666644 46789999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCC
Q 013299 309 ARSTNMRDLSILYRLSLEYAEQRKLNA----AHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGK 384 (446)
Q Consensus 309 l~~~~P~~~~a~~~lg~~~~~~~~~~~----A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~ 384 (446)
+ +++|+++.+++++|.++..+|++++ |+..|+++++++|++ ..++..+|.++..+|++++|+.++++++..+|
T Consensus 239 l-~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~-~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P- 315 (656)
T PRK15174 239 L-ARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDN-VRIVTLYADALIRTGQNEKAIPLLQQSLATHP- 315 (656)
T ss_pred H-hcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-
Confidence 9 9999999999999999999999996 899999999999999 59999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhh
Q 013299 385 WEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQ 421 (446)
Q Consensus 385 ~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~ 421 (446)
+++.++.++|.++...|++++|+..|+++++..|.+
T Consensus 316 -~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~ 351 (656)
T PRK15174 316 -DLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVT 351 (656)
T ss_pred -CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 899999999999999999999999999999987653
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-26 Score=247.23 Aligned_cols=345 Identities=13% Similarity=-0.006 Sum_probs=243.1
Q ss_pred HHHHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHH
Q 013299 10 LEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRA 89 (446)
Q Consensus 10 ~~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~a 89 (446)
+.++...|.++..+|++++|++.|+++|+. .|.+ ..+...++.++...|++++|+..++++
T Consensus 49 a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--------~P~~-----------~~a~~~la~~l~~~g~~~eA~~~l~~~ 109 (765)
T PRK10049 49 ARGYAAVAVAYRNLKQWQNSLTLWQKALSL--------EPQN-----------DDYQRGLILTLADAGQYDEALVKAKQL 109 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 445677777777777777777777777765 3432 123445566777777777777777777
Q ss_pred hCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHH
Q 013299 90 LLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSF 169 (446)
Q Consensus 90 l~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~ 169 (446)
++. +|++.. ...++.+ +...|++++|+..+ +.+++..|++++++..+|.
T Consensus 110 l~~----~P~~~~--~~~la~~--------------------l~~~g~~~~Al~~l-----~~al~~~P~~~~~~~~la~ 158 (765)
T PRK10049 110 VSG----APDKAN--LLALAYV--------------------YKRAGRHWDELRAM-----TQALPRAPQTQQYPTEYVQ 158 (765)
T ss_pred HHh----CCCCHH--HHHHHHH--------------------HHHCCCHHHHHHHH-----HHHHHhCCCCHHHHHHHHH
Confidence 777 444433 2233322 23456777777765 5566777888877777777
Q ss_pred HHHhcCCHHH----------------------------------------------HHHHHHhhCCCCCCcHHH------
Q 013299 170 AFSIAGDLSS----------------------------------------------LATQIEELLPGIINRKER------ 197 (446)
Q Consensus 170 ~l~~~~~~~~----------------------------------------------A~~~~~~al~~~p~~~~~------ 197 (446)
++...++.++ |++.|+++++..|.+|+.
T Consensus 159 ~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~ 238 (765)
T PRK10049 159 ALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQR 238 (765)
T ss_pred HHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHH
Confidence 7766555544 344444444332323222
Q ss_pred -HHH-HHHHHHHCCChHHHHHHHHHHhcCCCCCCChH-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHH
Q 013299 198 -YHI-LALCYYGAGEDLVALNLLRTLLSGSEDPKCLP-ALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTAN 274 (446)
Q Consensus 198 -~~~-lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~-a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~ 274 (446)
+.. +| .+...|++++|+..|++++ +..|..|. +...++.+ +...|++++|+.+|+++++. +|..........
T Consensus 239 a~~d~l~-~Ll~~g~~~eA~~~~~~ll--~~~~~~P~~a~~~la~~-yl~~g~~e~A~~~l~~~l~~-~p~~~~~~~~~~ 313 (765)
T PRK10049 239 ARIDRLG-ALLARDRYKDVISEYQRLK--AEGQIIPPWAQRWVASA-YLKLHQPEKAQSILTELFYH-PETIADLSDEEL 313 (765)
T ss_pred HHHHHHH-HHHHhhhHHHHHHHHHHhh--ccCCCCCHHHHHHHHHH-HHhcCCcHHHHHHHHHHhhc-CCCCCCCChHHH
Confidence 111 33 3456688888888888888 55433221 22223444 33467888888888887773 332110111233
Q ss_pred HHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCC---------------CHHHHHHHHHHHHHcCCHHHHHHH
Q 013299 275 CLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMR---------------DLSILYRLSLEYAEQRKLNAAHYY 339 (446)
Q Consensus 275 ~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~---------------~~~a~~~lg~~~~~~~~~~~A~~~ 339 (446)
..++.++. ..+++++|+..++++. ..+|. ...+++.+|.++...|++++|+..
T Consensus 314 ~~L~~a~~-----------~~g~~~eA~~~l~~~~-~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~ 381 (765)
T PRK10049 314 ADLFYSLL-----------ESENYPGALTVTAHTI-NNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMR 381 (765)
T ss_pred HHHHHHHH-----------hcccHHHHHHHHHHHh-hcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 44444443 3468999999999999 88873 246788999999999999999999
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Q 013299 340 AKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQ 419 (446)
Q Consensus 340 ~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~ 419 (446)
+++++...|++ ..++..+|.++...|++++|+..+++++.++| ++..+++.+|.++...|++++|...++++++..|
T Consensus 382 l~~al~~~P~n-~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~P--d~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~P 458 (765)
T PRK10049 382 ARELAYNAPGN-QGLRIDYASVLQARGWPRAAENELKKAEVLEP--RNINLEVEQAWTALDLQEWRQMDVLTDDVVAREP 458 (765)
T ss_pred HHHHHHhCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC--CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 99999999999 59999999999999999999999999999999 9999999999999999999999999999999998
Q ss_pred hhhhh
Q 013299 420 VQTKT 424 (446)
Q Consensus 420 ~~~~~ 424 (446)
++..+
T Consensus 459 d~~~~ 463 (765)
T PRK10049 459 QDPGV 463 (765)
T ss_pred CCHHH
Confidence 76654
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8e-26 Score=245.34 Aligned_cols=339 Identities=12% Similarity=-0.015 Sum_probs=248.7
Q ss_pred HHHHHhHHHHHHhCChHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCc------cccCCCc
Q 013299 64 RAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGS------SFVPRNN 137 (446)
Q Consensus 64 ~a~~~l~~~~~~~g~~~eA~~~y~~al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~------~~~~~~~ 137 (446)
.++..++-...++|+.++|...|+.+...+. +..-+..+..+++..+........+... ..++. .-.-.++
T Consensus 377 ~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ 453 (987)
T PRK09782 377 TRLDQLTWQLMQNGQSREAADLLLQRYPFQG--DARLSQTLMARLASLLESHPYLATPAKV-AILSKPLPLAEQRQWQSQ 453 (987)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHhcCCCc--ccccCHHHHHHHHHHHHhCCcccchHHH-HHhccccccchhHHHHhh
Confidence 4667777788999999999999999998521 1111122444555544433221111100 00000 0000122
Q ss_pred HHHHHHHHHHHHHHHHhhcCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHH
Q 013299 138 IEEAILLLMILLRKVALKRIEW--DPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVAL 215 (446)
Q Consensus 138 ~~eA~~~l~~~~~~~~l~~~p~--~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~ 215 (446)
+.++...+. ....++...|. ++.+|+++|.++.. +++++|+.+|.+++...|++. .+..+|.++...|++++|+
T Consensus 454 ~~~~~~~~~--~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi 529 (987)
T PRK09782 454 LPGIADNCP--AIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATAL 529 (987)
T ss_pred hhhhhhhHH--HHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHH
Confidence 222211110 11344566677 99999999999987 899999999999999999764 4666777778999999999
Q ss_pred HHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHH
Q 013299 216 NLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRA 295 (446)
Q Consensus 216 ~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~ 295 (446)
..|++++ ...|.+. .++.++.++. ..|++++|+.+++++++..|+. ...+..++.... +.
T Consensus 530 ~~~rka~--~~~p~~~-a~~~la~all-~~Gd~~eA~~~l~qAL~l~P~~-----~~l~~~La~~l~-----------~~ 589 (987)
T PRK09782 530 AAWQKIS--LHDMSNE-DLLAAANTAQ-AAGNGAARDRWLQQAEQRGLGD-----NALYWWLHAQRY-----------IP 589 (987)
T ss_pred HHHHHHh--ccCCCcH-HHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCcc-----HHHHHHHHHHHH-----------hC
Confidence 9999998 6666654 4555555544 4789999999999999854332 223333333221 23
Q ss_pred HHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHH
Q 013299 296 TRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETIL 375 (446)
Q Consensus 296 ~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~ 375 (446)
|++++|+..|++++ +++|+ +.+++++|.++.+.|++++|+..|++++.++|++ ..++.++|.++..+|++++|+..+
T Consensus 590 Gr~~eAl~~~~~AL-~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~-~~a~~nLG~aL~~~G~~eeAi~~l 666 (987)
T PRK09782 590 GQPELALNDLTRSL-NIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNN-SNYQAALGYALWDSGDIAQSREML 666 (987)
T ss_pred CCHHHHHHHHHHHH-HhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHH
Confidence 67999999999999 99996 9999999999999999999999999999999999 499999999999999999999999
Q ss_pred HHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhccCCcchhhH
Q 013299 376 NAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKV 434 (446)
Q Consensus 376 ~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~~~~~~~~~~~ 434 (446)
+++++.+| +++.+++++|.++..+|++++|+..|++++++.|+........+.....
T Consensus 667 ~~AL~l~P--~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~ 723 (987)
T PRK09782 667 ERAHKGLP--DDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQ 723 (987)
T ss_pred HHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHH
Confidence 99999999 8999999999999999999999999999999987655544444433333
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.8e-26 Score=231.50 Aligned_cols=394 Identities=16% Similarity=0.124 Sum_probs=298.9
Q ss_pred HHHHHHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHH
Q 013299 8 LLLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYR 87 (446)
Q Consensus 8 ~~~~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~ 87 (446)
+.++.+|++|.++..+|+||+|...|.++++. +++++. -.+.-+|..|+..|++++|+..|.
T Consensus 305 ~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--------~~d~~~----------l~~~GlgQm~i~~~dle~s~~~fE 366 (1018)
T KOG2002|consen 305 IKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--------DNDNFV----------LPLVGLGQMYIKRGDLEESKFCFE 366 (1018)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--------CCCCcc----------ccccchhHHHHHhchHHHHHHHHH
Confidence 56899999999999999999999999999986 344321 134456789999999999999999
Q ss_pred HHhCCCCCCChHHHHHH---------------HHHHHHHHhhhcCCCCCCcccc--ccCccccCCCcHHHHHHHHHHHHH
Q 013299 88 RALLPCWNLDAETTAKL---------------QKEFAIFLLYCGGETCPPNLRS--QMGSSFVPRNNIEEAILLLMILLR 150 (446)
Q Consensus 88 ~al~~~~~~~~~~~~~l---------------~~~~a~~ll~~~~~~~~~~~~~--~~~~~~~~~~~~~eA~~~l~~~~~ 150 (446)
++++. .|.+...+ ....+.-++....+..|.+... .++.++ .+++.-.++..+..+..
T Consensus 367 kv~k~----~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~-e~~d~~~sL~~~~~A~d 441 (1018)
T KOG2002|consen 367 KVLKQ----LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLL-EQTDPWASLDAYGNALD 441 (1018)
T ss_pred HHHHh----CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHH-HhcChHHHHHHHHHHHH
Confidence 99998 44332221 1122222332222222322211 112222 23334344444433221
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCC-----CCCc-----HHHHHHHHHHHHHCCChHHHHHHHHH
Q 013299 151 KVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPG-----IINR-----KERYHILALCYYGAGEDLVALNLLRT 220 (446)
Q Consensus 151 ~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~-----~p~~-----~~~~~~lg~~~~~~g~~~eA~~~~~~ 220 (446)
.-.-...+--+++.+++|..+...|++++|...|.+|+.. +++. ...-|++|.++-..++++.|...|..
T Consensus 442 ~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~ 521 (1018)
T KOG2002|consen 442 ILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKS 521 (1018)
T ss_pred HHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 1111223456889999999999999999999999999877 2222 23589999999999999999999999
Q ss_pred HhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhc----------
Q 013299 221 LLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAIT---------- 290 (446)
Q Consensus 221 al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~---------- 290 (446)
.+ +..|..+.+++.+|.+. +..+...+|..+++.++.....+ +.++..+|.++.....+.+.
T Consensus 522 Il--kehp~YId~ylRl~~ma-~~k~~~~ea~~~lk~~l~~d~~n-----p~arsl~G~~~l~k~~~~~a~k~f~~i~~~ 593 (1018)
T KOG2002|consen 522 IL--KEHPGYIDAYLRLGCMA-RDKNNLYEASLLLKDALNIDSSN-----PNARSLLGNLHLKKSEWKPAKKKFETILKK 593 (1018)
T ss_pred HH--HHCchhHHHHHHhhHHH-HhccCcHHHHHHHHHHHhcccCC-----cHHHHHHHHHHHhhhhhcccccHHHHHHhh
Confidence 99 89999999998877443 44678889999999999965444 46777788666554433110
Q ss_pred ---------------------------hHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013299 291 ---------------------------DFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKML 343 (446)
Q Consensus 291 ---------------------------~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~a 343 (446)
.....+++++|++.|.+++ ..+|.|.-+-+.+|.+++..|++.+|+..|.+.
T Consensus 594 ~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL-~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqV 672 (1018)
T KOG2002|consen 594 TSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVL-RNDPKNMYAANGIGIVLAEKGRFSEARDIFSQV 672 (1018)
T ss_pred hccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHH-hcCcchhhhccchhhhhhhccCchHHHHHHHHH
Confidence 0124578899999999999 999999999999999999999999999999999
Q ss_pred HhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhh
Q 013299 344 LKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTK 423 (446)
Q Consensus 344 l~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~ 423 (446)
.+--.+++ .+|.|+|.|+..+|+|-.|++.|+.+++..-+.++++++..+|.++.+.|++.+|.++...++.+.
T Consensus 673 rEa~~~~~-dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~----- 746 (1018)
T KOG2002|consen 673 REATSDFE-DVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLA----- 746 (1018)
T ss_pred HHHHhhCC-ceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-----
Confidence 88777775 999999999999999999999999999765322689999999999999999999999999999997
Q ss_pred hccCCcchhhHHhhhhccccC
Q 013299 424 TFSSDKRFYKVYFMRKRVSTK 444 (446)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~ 444 (446)
|..+.|.||..-|..+
T Consensus 747 -----p~~~~v~FN~a~v~kk 762 (1018)
T KOG2002|consen 747 -----PSNTSVKFNLALVLKK 762 (1018)
T ss_pred -----CccchHHhHHHHHHHH
Confidence 6667799998887653
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.3e-25 Score=237.72 Aligned_cols=338 Identities=11% Similarity=-0.035 Sum_probs=261.2
Q ss_pred HHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHhCCCC
Q 013299 15 LKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRALLPCW 94 (446)
Q Consensus 15 ~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~al~~~~ 94 (446)
....+..-.|++++|++.|.+++.. .|.. ..++..+|.++...|++++|+..|+++++.
T Consensus 20 d~~~ia~~~g~~~~A~~~~~~~~~~--------~~~~-----------a~~~~~lA~~~~~~g~~~~A~~~~~~al~~-- 78 (765)
T PRK10049 20 DWLQIALWAGQDAEVITVYNRYRVH--------MQLP-----------ARGYAAVAVAYRNLKQWQNSLTLWQKALSL-- 78 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--------CCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 4456677899999999999998763 2221 346778889999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhc
Q 013299 95 NLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIA 174 (446)
Q Consensus 95 ~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~ 174 (446)
+|.+... ...++.+ +...|++++|+..+ +.+++..|+++. +..+|.++...
T Consensus 79 --~P~~~~a-~~~la~~--------------------l~~~g~~~eA~~~l-----~~~l~~~P~~~~-~~~la~~l~~~ 129 (765)
T PRK10049 79 --EPQNDDY-QRGLILT--------------------LADAGQYDEALVKA-----KQLVSGAPDKAN-LLALAYVYKRA 129 (765)
T ss_pred --CCCCHHH-HHHHHHH--------------------HHHCCCHHHHHHHH-----HHHHHhCCCCHH-HHHHHHHHHHC
Confidence 5554332 2334433 33467899999876 566788999999 99999999999
Q ss_pred CCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcC------------------------------
Q 013299 175 GDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSG------------------------------ 224 (446)
Q Consensus 175 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~------------------------------ 224 (446)
|++++|+..|+++++++|+++++++.+|.++...|+.++|+..++++.+.
T Consensus 130 g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~ 209 (765)
T PRK10049 130 GRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERY 209 (765)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHH
Confidence 99999999999999999999999999999998888877666555543300
Q ss_pred --------------CCCCCChHH-------HHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHh
Q 013299 225 --------------SEDPKCLPA-------LLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSA 283 (446)
Q Consensus 225 --------------~~~P~~~~a-------~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~ 283 (446)
...|.++.. .+...+.++ ..+++++|+..|+++++..++.+ ..+...+|.+|..
T Consensus 210 ~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll-~~g~~~eA~~~~~~ll~~~~~~P----~~a~~~la~~yl~ 284 (765)
T PRK10049 210 AIADRALAQYDALEALWHDNPDATADYQRARIDRLGALL-ARDRYKDVISEYQRLKAEGQIIP----PWAQRWVASAYLK 284 (765)
T ss_pred HHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHH-HhhhHHHHHHHHHHhhccCCCCC----HHHHHHHHHHHHh
Confidence 222222211 111012223 34667777777777766322111 1233334555544
Q ss_pred hhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC---------
Q 013299 284 QSKVAITDFDRATRQAKALQALVSAARSTNMRD----LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS--------- 350 (446)
Q Consensus 284 ~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~----~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~--------- 350 (446)
.+++++|+..|++++ +.+|.+ ......++.++.++|++++|+..++++...+|..
T Consensus 285 -----------~g~~e~A~~~l~~~l-~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~ 352 (765)
T PRK10049 285 -----------LHQPEKAQSILTELF-YHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTS 352 (765)
T ss_pred -----------cCCcHHHHHHHHHHh-hcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCC
Confidence 467899999999999 999887 4577888889999999999999999999988731
Q ss_pred ----C-HHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhh
Q 013299 351 ----N-LKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQ 421 (446)
Q Consensus 351 ----~-~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~ 421 (446)
. ..++..+|.++...|++++|+..+++++...| ++..+++.+|.++...|++++|++.+++++++.|++
T Consensus 353 ~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P--~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~ 426 (765)
T PRK10049 353 IPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAP--GNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRN 426 (765)
T ss_pred CCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Confidence 1 25778899999999999999999999999999 899999999999999999999999999999998765
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-25 Score=242.68 Aligned_cols=256 Identities=9% Similarity=-0.059 Sum_probs=223.7
Q ss_pred CcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHH
Q 013299 136 NNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVAL 215 (446)
Q Consensus 136 ~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~ 215 (446)
++.++|+..+ ...+...|++. .+..+|.++...|++++|+..|++++...|. ...++.+|.++...|++++|+
T Consensus 490 ~~~~eAi~a~-----~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~-~~a~~~la~all~~Gd~~eA~ 562 (987)
T PRK09782 490 TLPGVALYAW-----LQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMS-NEDLLAAANTAQAAGNGAARD 562 (987)
T ss_pred CCcHHHHHHH-----HHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHCCCHHHHH
Confidence 5778898865 33456668654 3555677778999999999999999887665 456899999999999999999
Q ss_pred HHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHH
Q 013299 216 NLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRA 295 (446)
Q Consensus 216 ~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~ 295 (446)
..|++++ ..+|++......++.. ....|++++|+.+++++++..| + ..++..+|.++...
T Consensus 563 ~~l~qAL--~l~P~~~~l~~~La~~-l~~~Gr~~eAl~~~~~AL~l~P-~-----~~a~~~LA~~l~~l----------- 622 (987)
T PRK09782 563 RWLQQAE--QRGLGDNALYWWLHAQ-RYIPGQPELALNDLTRSLNIAP-S-----ANAYVARATIYRQR----------- 622 (987)
T ss_pred HHHHHHH--hcCCccHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHhCC-C-----HHHHHHHHHHHHHC-----------
Confidence 9999999 8999988766544332 3346999999999999999654 3 46889999988664
Q ss_pred HHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHH
Q 013299 296 TRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETIL 375 (446)
Q Consensus 296 ~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~ 375 (446)
|++++|+..|++++ +++|+++.+++++|.++...|++++|+..|+++++++|+++ .+++++|.++..+|++++|+.++
T Consensus 623 G~~deA~~~l~~AL-~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~-~a~~nLA~al~~lGd~~eA~~~l 700 (987)
T PRK09782 623 HNVPAAVSDLRAAL-ELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDP-ALIRQLAYVNQRLDDMAATQHYA 700 (987)
T ss_pred CCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHCCCHHHHHHHH
Confidence 67899999999999 99999999999999999999999999999999999999994 99999999999999999999999
Q ss_pred HHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhh
Q 013299 376 NAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQT 422 (446)
Q Consensus 376 ~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~ 422 (446)
++++++.| ++..+.+..|.++....+++.|.+.|++...+.|...
T Consensus 701 ~~Al~l~P--~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 701 RLVIDDID--NQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS 745 (987)
T ss_pred HHHHhcCC--CCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch
Confidence 99999999 8999999999999999999999999999999987643
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.8e-26 Score=227.74 Aligned_cols=310 Identities=15% Similarity=0.057 Sum_probs=218.5
Q ss_pred HHHHHHHHHHhhhhccc--ChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHH
Q 013299 8 LLLEAIFLKAKCLQGLG--RFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMS 85 (446)
Q Consensus 8 ~~~~~~~~~g~~~~~~g--~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~ 85 (446)
.+++.+...|.-+..+- +.++|+..|.+ + |...+.. .-++-.+|..|+..++|++|..+
T Consensus 315 ~l~~llr~~~~~~~~~s~y~~~~A~~~~~k-l-------p~h~~nt-----------~wvl~q~GrayFEl~~Y~~a~~~ 375 (638)
T KOG1126|consen 315 ELMELLRGLGEGYRSLSQYNCREALNLFEK-L-------PSHHYNT-----------GWVLSQLGRAYFELIEYDQAERI 375 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-h-------HHhcCCc-----------hHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555554443 44566666555 2 3333331 24778899999999999999999
Q ss_pred HHHHhCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHH
Q 013299 86 YRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILD 165 (446)
Q Consensus 86 y~~al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~ 165 (446)
|+.+-+. +|-.... ..-+...|.-. ++ +-++..| .+..+..+|+.|+.|.
T Consensus 376 F~~~r~~----~p~rv~~-meiyST~LWHL-------------------q~--~v~Ls~L----aq~Li~~~~~sPesWc 425 (638)
T KOG1126|consen 376 FSLVRRI----EPYRVKG-MEIYSTTLWHL-------------------QD--EVALSYL----AQDLIDTDPNSPESWC 425 (638)
T ss_pred HHHHHhh----ccccccc-hhHHHHHHHHH-------------------Hh--hHHHHHH----HHHHHhhCCCCcHHHH
Confidence 9999888 5422110 00000000000 00 0111111 2334556666666666
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCC
Q 013299 166 HLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYP 245 (446)
Q Consensus 166 ~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~ 245 (446)
-+|+++..+++++.|+.+|++|+++||+.+-+|.-+|--+.....+|.|...|+.|| ..+|.+..
T Consensus 426 a~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al--~~~~rhYn------------- 490 (638)
T KOG1126|consen 426 ALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL--GVDPRHYN------------- 490 (638)
T ss_pred HhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhh--cCCchhhH-------------
Confidence 666666666666666666666666666666666666666666666666666666666 66665544
Q ss_pred CCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 013299 246 DLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSL 325 (446)
Q Consensus 246 ~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~ 325 (446)
||+-+|++|.++ ++++.|.-.|++|+ +++|.|......+|.
T Consensus 491 ---------------------------AwYGlG~vy~Kq-----------ek~e~Ae~~fqkA~-~INP~nsvi~~~~g~ 531 (638)
T KOG1126|consen 491 ---------------------------AWYGLGTVYLKQ-----------EKLEFAEFHFQKAV-EINPSNSVILCHIGR 531 (638)
T ss_pred ---------------------------HHHhhhhheecc-----------chhhHHHHHHHhhh-cCCccchhHHhhhhH
Confidence 555556665443 45788888999999 999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHH
Q 013299 326 EYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLK 405 (446)
Q Consensus 326 ~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~ 405 (446)
++.+.|+.|+|+.+|++|+.++|.++ -+.+..|.++..+++|++|+..+++..+..| +...+++.+|.++.++|+.+
T Consensus 532 ~~~~~k~~d~AL~~~~~A~~ld~kn~-l~~~~~~~il~~~~~~~eal~~LEeLk~~vP--~es~v~~llgki~k~~~~~~ 608 (638)
T KOG1126|consen 532 IQHQLKRKDKALQLYEKAIHLDPKNP-LCKYHRASILFSLGRYVEALQELEELKELVP--QESSVFALLGKIYKRLGNTD 608 (638)
T ss_pred HHHHhhhhhHHHHHHHHHHhcCCCCc-hhHHHHHHHHHhhcchHHHHHHHHHHHHhCc--chHHHHHHHHHHHHHHccch
Confidence 99999999999999999999999985 8888999999999999999999999999999 88889999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhh
Q 013299 406 GAVETYTHLLAALQVQTK 423 (446)
Q Consensus 406 eA~~~~~~~l~l~~~~~~ 423 (446)
.|+..|--++++.|+..+
T Consensus 609 ~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 609 LALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHhhHHHhcCCCccch
Confidence 999999999998876444
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-26 Score=230.11 Aligned_cols=258 Identities=16% Similarity=0.149 Sum_probs=232.7
Q ss_pred HhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHH-HHHhcCCCCCCCh
Q 013299 153 ALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLL-RTLLSGSEDPKCL 231 (446)
Q Consensus 153 ~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~-~~al~~~~~P~~~ 231 (446)
+-...++-.++...+|.+|...++|++|..+|+.+-++.|-..+..--+..++|.+.+.- ++..+ +..+ ..+|+.|
T Consensus 345 lp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v-~Ls~Laq~Li--~~~~~sP 421 (638)
T KOG1126|consen 345 LPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEV-ALSYLAQDLI--DTDPNSP 421 (638)
T ss_pred hHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhH-HHHHHHHHHH--hhCCCCc
Confidence 345556778999999999999999999999999999999999999999999999998644 45444 5666 8899999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHh
Q 013299 232 PALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARS 311 (446)
Q Consensus 232 ~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~ 311 (446)
+.|..+|. |+..+++.+.|+.+|+||+++ +|. .+.+|..+|.-+.. .+.+|+|..+|++|+ .
T Consensus 422 esWca~GN-cfSLQkdh~~Aik~f~RAiQl-dp~----faYayTLlGhE~~~-----------~ee~d~a~~~fr~Al-~ 483 (638)
T KOG1126|consen 422 ESWCALGN-CFSLQKDHDTAIKCFKRAIQL-DPR----FAYAYTLLGHESIA-----------TEEFDKAMKSFRKAL-G 483 (638)
T ss_pred HHHHHhcc-hhhhhhHHHHHHHHHHHhhcc-CCc----cchhhhhcCChhhh-----------hHHHHhHHHHHHhhh-c
Confidence 99997765 566678999999999999995 443 26789999986644 357999999999999 9
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHH
Q 013299 312 TNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELL 391 (446)
Q Consensus 312 ~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 391 (446)
.+|++..|||.+|.+|.++++++.|+-+|++|+.++|.+ ......+|.++.++|+.++|+..+++|+-++| .++...
T Consensus 484 ~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~n-svi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~--kn~l~~ 560 (638)
T KOG1126|consen 484 VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSN-SVILCHIGRIQHQLKRKDKALQLYEKAIHLDP--KNPLCK 560 (638)
T ss_pred CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccc-hhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC--CCchhH
Confidence 999999999999999999999999999999999999999 59999999999999999999999999999999 799999
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhccCCcchhhHHhhhhccccC
Q 013299 392 RTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKVYFMRKRVSTK 444 (446)
Q Consensus 392 ~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (446)
|.+|.++...+++++|+..++++.++. |+++.|+|..+|++++
T Consensus 561 ~~~~~il~~~~~~~eal~~LEeLk~~v----------P~es~v~~llgki~k~ 603 (638)
T KOG1126|consen 561 YHRASILFSLGRYVEALQELEELKELV----------PQESSVFALLGKIYKR 603 (638)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHhC----------cchHHHHHHHHHHHHH
Confidence 999999999999999999999999998 8999999999998764
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-24 Score=216.23 Aligned_cols=232 Identities=17% Similarity=0.091 Sum_probs=194.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChH-----HHHH
Q 013299 162 SILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLP-----ALLI 236 (446)
Q Consensus 162 ~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~-----a~~~ 236 (446)
.++..+|.++...|++++|+..|+++++.+|.+..++..++.++...|++++|+..+++++ ..+|++.. .+..
T Consensus 108 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~~~~~~~~ 185 (389)
T PRK11788 108 LALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLE--KLGGDSLRVEIAHFYCE 185 (389)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHH--HhcCCcchHHHHHHHHH
Confidence 4677889999999999999999999999999999999999999999999999999999999 77777543 2334
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCC
Q 013299 237 ASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRD 316 (446)
Q Consensus 237 ~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~ 316 (446)
++.+ +...|++++|+.+++++++..|.. ..+++.+|.++... |++++|+..|++++ +.+|++
T Consensus 186 la~~-~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~-----------g~~~~A~~~~~~~~-~~~p~~ 247 (389)
T PRK11788 186 LAQQ-ALARGDLDAARALLKKALAADPQC-----VRASILLGDLALAQ-----------GDYAAAIEALERVE-EQDPEY 247 (389)
T ss_pred HHHH-HHhCCCHHHHHHHHHHHHhHCcCC-----HHHHHHHHHHHHHC-----------CCHHHHHHHHHHHH-HHChhh
Confidence 4444 345789999999999999964432 46788888888654 57899999999999 999987
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHH
Q 013299 317 -LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKA 395 (446)
Q Consensus 317 -~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a 395 (446)
..++..++.++...|++++|+..+++++..+|+. ..+..++.++...|++++|+..++++++.+| ++..+...++
T Consensus 248 ~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~--~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P--~~~~~~~l~~ 323 (389)
T PRK11788 248 LSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGA--DLLLALAQLLEEQEGPEAAQALLREQLRRHP--SLRGFHRLLD 323 (389)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--hHHHHHHHHHHHhCCHHHHHHHHHHHHHhCc--CHHHHHHHHH
Confidence 4678899999999999999999999999999986 4458899999999999999999999999999 7766554444
Q ss_pred HHHHH--hCCHHHHHHHHHHHHHH
Q 013299 396 KVQLV--QGQLKGAVETYTHLLAA 417 (446)
Q Consensus 396 ~~~~~--~g~~~eA~~~~~~~l~l 417 (446)
..+.. .|+.++++..+++.++.
T Consensus 324 ~~~~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 324 YHLAEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred HhhhccCCccchhHHHHHHHHHHH
Confidence 33322 56999999999988863
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5e-24 Score=204.29 Aligned_cols=237 Identities=13% Similarity=0.066 Sum_probs=214.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHH
Q 013299 161 PSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKI 240 (446)
Q Consensus 161 ~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~ 240 (446)
+.++.+.|..+...|++-.|.+.|+++|.++|.+...|..+|.+|...++-++-...|.+|. .+||+++++|+..|.+
T Consensus 326 A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~--~ldp~n~dvYyHRgQm 403 (606)
T KOG0547|consen 326 AEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAE--DLDPENPDVYYHRGQM 403 (606)
T ss_pred HHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHH--hcCCCCCchhHhHHHH
Confidence 56778889999999999999999999999999999999999999999999999999999999 9999999999999988
Q ss_pred HhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHH
Q 013299 241 CGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSIL 320 (446)
Q Consensus 241 ~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~ 320 (446)
.+. ++++++|+.-|++++++.|.+ ..++..++.+..+ +++++++...|+.+. +.-|+-++++
T Consensus 404 ~fl-L~q~e~A~aDF~Kai~L~pe~-----~~~~iQl~~a~Yr-----------~~k~~~~m~~Fee~k-kkFP~~~Evy 465 (606)
T KOG0547|consen 404 RFL-LQQYEEAIADFQKAISLDPEN-----AYAYIQLCCALYR-----------QHKIAESMKTFEEAK-KKFPNCPEVY 465 (606)
T ss_pred HHH-HHHHHHHHHHHHHHhhcChhh-----hHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH-HhCCCCchHH
Confidence 665 689999999999999965443 5678888887755 457899999999999 9999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhcCC------CCHHHHHHHHHHHH-HccCHHHHHHHHHHHHhhcCCCCcHHHHHH
Q 013299 321 YRLSLEYAEQRKLNAAHYYAKMLLKLEGG------SNLKGWLLMARILS-AQKRYEDAETILNAALDQTGKWEQGELLRT 393 (446)
Q Consensus 321 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~------~~~~~~~~la~~~~-~~g~~~eA~~~~~~al~~~p~~~~~~~~~~ 393 (446)
..-|.++..++++++|++.|.+|+.|.|. ++ ..+.+.|.+.. -.+++..|+..+++|++++| .--.++..
T Consensus 466 ~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~-~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dp--kce~A~~t 542 (606)
T KOG0547|consen 466 NLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNA-APLVHKALLVLQWKEDINQAENLLRKAIELDP--KCEQAYET 542 (606)
T ss_pred HHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccc-hhhhhhhHhhhchhhhHHHHHHHHHHHHccCc--hHHHHHHH
Confidence 99999999999999999999999999999 64 66666665543 46899999999999999999 67788999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHhh
Q 013299 394 KAKVQLVQGQLKGAVETYTHLLAALQV 420 (446)
Q Consensus 394 ~a~~~~~~g~~~eA~~~~~~~l~l~~~ 420 (446)
+|.+..++|+.++|++.|++++.+..-
T Consensus 543 laq~~lQ~~~i~eAielFEksa~lArt 569 (606)
T KOG0547|consen 543 LAQFELQRGKIDEAIELFEKSAQLART 569 (606)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999888754
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.8e-24 Score=215.24 Aligned_cols=268 Identities=17% Similarity=0.006 Sum_probs=230.3
Q ss_pred ccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCc----HHHHHHHHHHHHH
Q 013299 132 FVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINR----KERYHILALCYYG 207 (446)
Q Consensus 132 ~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~ 207 (446)
+...|++++|+..+ ..+++.+|+++.++..+|.++...|++++|+..+++++...+.. ..+++.+|.++..
T Consensus 45 ~~~~~~~~~A~~~~-----~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 45 FLLNEQPDKAIDLF-----IEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHhcCChHHHHHHH-----HHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 44567899999886 55677899999999999999999999999999999999864332 3578999999999
Q ss_pred CCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhh
Q 013299 208 AGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKV 287 (446)
Q Consensus 208 ~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~ 287 (446)
.|++++|+..|++++ ..+|.+..++..++.++. ..|++++|+..++++++..+.+........+..+|.++..
T Consensus 120 ~g~~~~A~~~~~~~l--~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~---- 192 (389)
T PRK11788 120 AGLLDRAEELFLQLV--DEGDFAEGALQQLLEIYQ-QEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALA---- 192 (389)
T ss_pred CCCHHHHHHHHHHHH--cCCcchHHHHHHHHHHHH-HhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHh----
Confidence 999999999999999 889999988888887755 4789999999999999854433221223345567776654
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccC
Q 013299 288 AITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKR 367 (446)
Q Consensus 288 ~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~ 367 (446)
.+++++|+..|++++ +.+|++..+++.+|.++...|++++|+..+++++..+|++...++..++.++...|+
T Consensus 193 -------~~~~~~A~~~~~~al-~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~ 264 (389)
T PRK11788 193 -------RGDLDAARALLKKAL-AADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGD 264 (389)
T ss_pred -------CCCHHHHHHHHHHHH-hHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCC
Confidence 367899999999999 999999999999999999999999999999999999998733678899999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhh
Q 013299 368 YEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQT 422 (446)
Q Consensus 368 ~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~ 422 (446)
+++|+..++++++..| +.. .+..++.++...|++++|+..++++++..|+..
T Consensus 265 ~~~A~~~l~~~~~~~p--~~~-~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~ 316 (389)
T PRK11788 265 EAEGLEFLRRALEEYP--GAD-LLLALAQLLEEQEGPEAAQALLREQLRRHPSLR 316 (389)
T ss_pred HHHHHHHHHHHHHhCC--Cch-HHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH
Confidence 9999999999999999 654 448899999999999999999999999987644
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.4e-22 Score=189.93 Aligned_cols=227 Identities=12% Similarity=0.033 Sum_probs=201.8
Q ss_pred cccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCC
Q 013299 131 SFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGE 210 (446)
Q Consensus 131 ~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 210 (446)
++.-.|+.-.|...+ +.++...|.++..|..+|.+|....+.++-...|.+|.++||.+++.|++.|.+++-+++
T Consensus 335 F~fL~g~~~~a~~d~-----~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q 409 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDF-----DAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQ 409 (606)
T ss_pred hhhhcCCchhhhhhH-----HHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHH
Confidence 334445555554443 677888999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhc
Q 013299 211 DLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAIT 290 (446)
Q Consensus 211 ~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~ 290 (446)
|++|+.-|++++ .++|+++.++..++-..|+ .+++++++..|+.+++..|.. +.++...+.++..+
T Consensus 410 ~e~A~aDF~Kai--~L~pe~~~~~iQl~~a~Yr-~~k~~~~m~~Fee~kkkFP~~-----~Evy~~fAeiLtDq------ 475 (606)
T KOG0547|consen 410 YEEAIADFQKAI--SLDPENAYAYIQLCCALYR-QHKIAESMKTFEEAKKKFPNC-----PEVYNLFAEILTDQ------ 475 (606)
T ss_pred HHHHHHHHHHHh--hcChhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCCC-----chHHHHHHHHHhhH------
Confidence 999999999999 9999999999888777666 579999999999999988765 56888888888664
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 013299 291 DFDRATRQAKALQALVSAARSTNMR------DLSILYRLSLEYAE-QRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILS 363 (446)
Q Consensus 291 ~~~~~~~~~eAl~~~~~al~~~~P~------~~~a~~~lg~~~~~-~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~ 363 (446)
+++++|++.|.+|+ ++.|. ++..+.+-|.+..+ .+++..|+..+++|+++||... .++..||.+..
T Consensus 476 -----qqFd~A~k~YD~ai-~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce-~A~~tlaq~~l 548 (606)
T KOG0547|consen 476 -----QQFDKAVKQYDKAI-ELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCE-QAYETLAQFEL 548 (606)
T ss_pred -----HhHHHHHHHHHHHH-hhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHH-HHHHHHHHHHH
Confidence 57999999999999 99999 88888888877665 5899999999999999999995 99999999999
Q ss_pred HccCHHHHHHHHHHHHhhcC
Q 013299 364 AQKRYEDAETILNAALDQTG 383 (446)
Q Consensus 364 ~~g~~~eA~~~~~~al~~~p 383 (446)
.+|+.++|++.|++++.+.-
T Consensus 549 Q~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 549 QRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred HHhhHHHHHHHHHHHHHHHH
Confidence 99999999999999997754
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.5e-24 Score=205.04 Aligned_cols=265 Identities=20% Similarity=0.117 Sum_probs=118.2
Q ss_pred ccCccccCCCcHHHHHHHHHHHHHHHHhhc-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHH
Q 013299 127 QMGSSFVPRNNIEEAILLLMILLRKVALKR-IEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCY 205 (446)
Q Consensus 127 ~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~-~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 205 (446)
.++.++...|++++|+..+. ..+... .|++++.|..+|.+....++++.|+++|++++..++.++..+..++.+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~----~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l- 87 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLK----KAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL- 87 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccc----ccccccccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 34556778899999998762 222333 489999999999999999999999999999999999999999999999
Q ss_pred HHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhh
Q 013299 206 YGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQS 285 (446)
Q Consensus 206 ~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~ 285 (446)
...+++++|+..++++. ..++ ++..+...+.++ ...++++++...++++.+. ++.. ..+..+..+|.++...
T Consensus 88 ~~~~~~~~A~~~~~~~~--~~~~-~~~~l~~~l~~~-~~~~~~~~~~~~l~~~~~~-~~~~--~~~~~~~~~a~~~~~~- 159 (280)
T PF13429_consen 88 LQDGDPEEALKLAEKAY--ERDG-DPRYLLSALQLY-YRLGDYDEAEELLEKLEEL-PAAP--DSARFWLALAEIYEQL- 159 (280)
T ss_dssp ---------------------------------H-H-HHTT-HHHHHHHHHHHHH--T-----T-HHHHHHHHHHHHHC-
T ss_pred ccccccccccccccccc--cccc-ccchhhHHHHHH-HHHhHHHHHHHHHHHHHhc-cCCC--CCHHHHHHHHHHHHHc-
Confidence 79999999999999998 5444 344444444444 4468999999999998863 3211 2367788899988654
Q ss_pred hhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHc
Q 013299 286 KVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQ 365 (446)
Q Consensus 286 ~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~ 365 (446)
|+.++|+.+|++++ +++|+|+.++..++.++...|+.+++...++......|+++ ..|..+|.++..+
T Consensus 160 ----------G~~~~A~~~~~~al-~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~-~~~~~la~~~~~l 227 (280)
T PF13429_consen 160 ----------GDPDKALRDYRKAL-ELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDP-DLWDALAAAYLQL 227 (280)
T ss_dssp ----------CHHHHHHHHHHHHH-HH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSC-CHCHHHHHHHHHH
T ss_pred ----------CCHHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHH-HHHHHHHHHhccc
Confidence 57899999999999 99999999999999999999999999999999988889986 8999999999999
Q ss_pred cCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 013299 366 KRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAAL 418 (446)
Q Consensus 366 g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~ 418 (446)
|++++|+.+++++++.+| +++.++.++|.++...|+.++|+..+++++..-
T Consensus 228 g~~~~Al~~~~~~~~~~p--~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~l 278 (280)
T PF13429_consen 228 GRYEEALEYLEKALKLNP--DDPLWLLAYADALEQAGRKDEALRLRRQALRLL 278 (280)
T ss_dssp T-HHHHHHHHHHHHHHST--T-HHHHHHHHHHHT-------------------
T ss_pred cccccccccccccccccc--ccccccccccccccccccccccccccccccccc
Confidence 999999999999999999 999999999999999999999999999998753
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.4e-21 Score=194.85 Aligned_cols=346 Identities=16% Similarity=0.114 Sum_probs=185.5
Q ss_pred HHHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHh
Q 013299 11 EAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRAL 90 (446)
Q Consensus 11 ~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~al 90 (446)
-+++-+|...+.-|+|-.|...|+.+|.+. |...|+. .++ .|.+..+.|+.+.|+..|.+++
T Consensus 165 l~LlGkA~i~ynkkdY~~al~yyk~al~in----p~~~aD~-----rIg---------ig~Cf~kl~~~~~a~~a~~ral 226 (1018)
T KOG2002|consen 165 LALLGKARIAYNKKDYRGALKYYKKALRIN----PACKADV-----RIG---------IGHCFWKLGMSEKALLAFERAL 226 (1018)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHhcC----cccCCCc-----cch---------hhhHHHhccchhhHHHHHHHHH
Confidence 356678888888889999999999988774 3333432 222 2467788999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Q 013299 91 LPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFA 170 (446)
Q Consensus 91 ~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~ 170 (446)
++ +|.+..++ -.++++.+.. .....+..+..++ ..+...+|.+|.+..+|+.-
T Consensus 227 qL----dp~~v~al-v~L~~~~l~~-----------------~d~~s~~~~~~ll-----~~ay~~n~~nP~~l~~LAn~ 279 (1018)
T KOG2002|consen 227 QL----DPTCVSAL-VALGEVDLNF-----------------NDSDSYKKGVQLL-----QRAYKENNENPVALNHLANH 279 (1018)
T ss_pred hc----ChhhHHHH-HHHHHHHHHc-----------------cchHHHHHHHHHH-----HHHHhhcCCCcHHHHHHHHH
Confidence 98 77664432 2333332211 1112233444433 23334556666666666666
Q ss_pred HHhcCCHHHHHHHHHhhCCCC---CCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCC-hHHHHHHHHHHhcCCC
Q 013299 171 FSIAGDLSSLATQIEELLPGI---INRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKC-LPALLIASKICGEYPD 246 (446)
Q Consensus 171 l~~~~~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~-~~a~~~~~~~~~~~~~ 246 (446)
+...|+|+.+....+.++... +--++.+|++|.+++.+|+|++|...|.+++ ..+|++ .-.++.+|.+++. .|
T Consensus 280 fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~--k~~~d~~~l~~~GlgQm~i~-~~ 356 (1018)
T KOG2002|consen 280 FYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESL--KADNDNFVLPLVGLGQMYIK-RG 356 (1018)
T ss_pred HhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH--ccCCCCccccccchhHHHHH-hc
Confidence 666666666666555555443 2223445666666666666666666666666 555555 3344444444333 45
Q ss_pred CHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 013299 247 LAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLE 326 (446)
Q Consensus 247 ~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~ 326 (446)
..++|+.+|+++++..|+. ......||..|...+. .....++|..++.+++ +..|.|.++|..+|.+
T Consensus 357 dle~s~~~fEkv~k~~p~~-----~etm~iLG~Lya~~~~-------~~~~~d~a~~~l~K~~-~~~~~d~~a~l~laql 423 (1018)
T KOG2002|consen 357 DLEESKFCFEKVLKQLPNN-----YETMKILGCLYAHSAK-------KQEKRDKASNVLGKVL-EQTPVDSEAWLELAQL 423 (1018)
T ss_pred hHHHHHHHHHHHHHhCcch-----HHHHHHHHhHHHhhhh-------hhHHHHHHHHHHHHHH-hcccccHHHHHHHHHH
Confidence 5566666666666544433 2344445555433310 1123455555555555 5555555555555555
Q ss_pred HHHcCCHHHHHHHHHHHHhh-----cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh-----cCCC---CcHHHHHH
Q 013299 327 YAEQRKLNAAHYYAKMLLKL-----EGGSNLKGWLLMARILSAQKRYEDAETILNAALDQ-----TGKW---EQGELLRT 393 (446)
Q Consensus 327 ~~~~~~~~~A~~~~~~al~l-----~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-----~p~~---~~~~~~~~ 393 (446)
+... +.-.++..|.+|+.+ .+ -|.+..+++|..++..|.+.+|...++.|+.. +++. -+....|+
T Consensus 424 ~e~~-d~~~sL~~~~~A~d~L~~~~~~-ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YN 501 (1018)
T KOG2002|consen 424 LEQT-DPWASLDAYGNALDILESKGKQ-IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYN 501 (1018)
T ss_pred HHhc-ChHHHHHHHHHHHHHHHHcCCC-CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHH
Confidence 4432 233335555555421 11 12355555555555555555555555555543 1100 01223555
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHh
Q 013299 394 KAKVQLVQGQLKGAVETYTHLLAALQ 419 (446)
Q Consensus 394 ~a~~~~~~g~~~eA~~~~~~~l~l~~ 419 (446)
+|.++...++++.|.+.|+.++.-.|
T Consensus 502 larl~E~l~~~~~A~e~Yk~Ilkehp 527 (1018)
T KOG2002|consen 502 LARLLEELHDTEVAEEMYKSILKEHP 527 (1018)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHCc
Confidence 55555555555555555555555443
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.4e-22 Score=206.46 Aligned_cols=253 Identities=12% Similarity=-0.081 Sum_probs=210.8
Q ss_pred CCCCHHHHH--HHHHHHHhc---CCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHC---------CChHHHHHHHHHHh
Q 013299 157 IEWDPSILD--HLSFAFSIA---GDLSSLATQIEELLPGIINRKERYHILALCYYGA---------GEDLVALNLLRTLL 222 (446)
Q Consensus 157 ~p~~~~~~~--~lg~~l~~~---~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~---------g~~~eA~~~~~~al 222 (446)
.|.+.++|. ..|..+... +.+++|++.|+++++++|+++.+|..+|.++... +++++|+..+++++
T Consensus 252 ~~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 252 ELNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 456666543 455544332 3568999999999999999999999999987744 34899999999999
Q ss_pred cCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHH
Q 013299 223 SGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKAL 302 (446)
Q Consensus 223 ~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl 302 (446)
+++|+++.++..+|.++. ..|++++|+.+|+++++..|.+ +.+++.+|.++... |++++|+
T Consensus 332 --~ldP~~~~a~~~lg~~~~-~~g~~~~A~~~~~~Al~l~P~~-----~~a~~~lg~~l~~~-----------G~~~eAi 392 (553)
T PRK12370 332 --ELDHNNPQALGLLGLINT-IHSEYIVGSLLFKQANLLSPIS-----ADIKYYYGWNLFMA-----------GQLEEAL 392 (553)
T ss_pred --hcCCCCHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHC-----------CCHHHHH
Confidence 999999999998877655 4689999999999999965443 57899999998765 5789999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc-CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 013299 303 QALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLE-GGSNLKGWLLMARILSAQKRYEDAETILNAALDQ 381 (446)
Q Consensus 303 ~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~-P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 381 (446)
..+++++ +++|+++.+++.++.++...|++++|+..+++++..+ |+++ .++.++|.++..+|++++|...++++...
T Consensus 393 ~~~~~Al-~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~-~~~~~la~~l~~~G~~~eA~~~~~~~~~~ 470 (553)
T PRK12370 393 QTINECL-KLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNP-ILLSMQVMFLSLKGKHELARKLTKEISTQ 470 (553)
T ss_pred HHHHHHH-hcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCH-HHHHHHHHHHHhCCCHHHHHHHHHHhhhc
Confidence 9999999 9999999988888888888999999999999999886 7774 88999999999999999999999999988
Q ss_pred cCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhccCCcchhhH
Q 013299 382 TGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKV 434 (446)
Q Consensus 382 ~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~~~~~~~~~~~ 434 (446)
.| ++..++..++.++...| ++|...++++++.....+...+..|.++.+
T Consensus 471 ~~--~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~ 519 (553)
T PRK12370 471 EI--TGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLVLVA 519 (553)
T ss_pred cc--hhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHH
Confidence 88 88888899999998888 588888988888776555444444444433
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.8e-21 Score=182.40 Aligned_cols=346 Identities=16% Similarity=0.092 Sum_probs=213.4
Q ss_pred HHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHH---HH---------------HHhHHHH
Q 013299 12 AIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNR---AV---------------ELLPELW 73 (446)
Q Consensus 12 ~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~---a~---------------~~l~~~~ 73 (446)
.+|..|+.+.+.|....|+..+..++.. -|-.|++|.++...+.. +. ..++.++
T Consensus 166 llYL~Gvv~k~~~~~s~A~~sfv~~v~~--------~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~ 237 (559)
T KOG1155|consen 166 LLYLYGVVLKELGLLSLAIDSFVEVVNR--------YPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAY 237 (559)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHhc--------CCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHH
Confidence 4688999999999999999999998864 35445444333321100 00 0122344
Q ss_pred HHhCChHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHH
Q 013299 74 KLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVA 153 (446)
Q Consensus 74 ~~~g~~~eA~~~y~~al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~~ 153 (446)
....+.++++.-+.+.+....... ..+..+.|. +...+.++++|+..+ +.+
T Consensus 238 ~el~q~~e~~~k~e~l~~~gf~~~----~~i~~~~A~--------------------~~y~~rDfD~a~s~F-----eei 288 (559)
T KOG1155|consen 238 QELHQHEEALQKKERLSSVGFPNS----MYIKTQIAA--------------------ASYNQRDFDQAESVF-----EEI 288 (559)
T ss_pred HHHHHHHHHHHHHHHHHhccCCcc----HHHHHHHHH--------------------HHhhhhhHHHHHHHH-----HHH
Confidence 555566666666666555411111 112222221 222344677777665 455
Q ss_pred hhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHH
Q 013299 154 LKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPA 233 (446)
Q Consensus 154 l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a 233 (446)
.+.+|-..+-.....+++.-..+-.+-.-.-+.+..+|--.+++.--.|+-|.-.++.+.|+..|++|+ ++||+...+
T Consensus 289 ~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRAL--kLNp~~~~a 366 (559)
T KOG1155|consen 289 RKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRAL--KLNPKYLSA 366 (559)
T ss_pred HhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHH--hcCcchhHH
Confidence 566665555555555555544443333333344555666666666666666666677777777777777 677777777
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhC
Q 013299 234 LLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTN 313 (446)
Q Consensus 234 ~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~ 313 (446)
|..+|--+.+ +.+...|+..|++|++..|.| -++|+-||.+|..+ +.+.=|+-+|++|+ +..
T Consensus 367 WTLmGHEyvE-mKNt~AAi~sYRrAvdi~p~D-----yRAWYGLGQaYeim-----------~Mh~YaLyYfqkA~-~~k 428 (559)
T KOG1155|consen 367 WTLMGHEYVE-MKNTHAAIESYRRAVDINPRD-----YRAWYGLGQAYEIM-----------KMHFYALYYFQKAL-ELK 428 (559)
T ss_pred HHHhhHHHHH-hcccHHHHHHHHHHHhcCchh-----HHHHhhhhHHHHHh-----------cchHHHHHHHHHHH-hcC
Confidence 7666655443 455667777777777744333 46777777776443 34566777777777 777
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh-------hcCCCC
Q 013299 314 MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALD-------QTGKWE 386 (446)
Q Consensus 314 P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~-------~~p~~~ 386 (446)
|+|+..|..||.+|.+.++.++|+.+|++|+.....+ ..++..+|.++..++++.+|..+|++.++ ..| +
T Consensus 429 PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte-~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~--~ 505 (559)
T KOG1155|consen 429 PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTE-GSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDD--E 505 (559)
T ss_pred CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccc-hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccch--H
Confidence 7777777777777777777777777777777776665 36777777777777777777777777775 233 3
Q ss_pred cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 013299 387 QGELLRTKAKVQLVQGQLKGAVETYTHLLAA 417 (446)
Q Consensus 387 ~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l 417 (446)
-..+...++.-+.+.+++++|-.+...++..
T Consensus 506 t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 506 TIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 4555555777777777777777766666554
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1e-21 Score=204.96 Aligned_cols=263 Identities=13% Similarity=-0.017 Sum_probs=218.3
Q ss_pred cHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH
Q 013299 137 NIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIA---------GDLSSLATQIEELLPGIINRKERYHILALCYYG 207 (446)
Q Consensus 137 ~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 207 (446)
.+++|+..+ +.+++.+|+++.+|..+|.++... +++++|+..++++++++|+++.+|..+|.++..
T Consensus 276 ~~~~A~~~~-----~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~ 350 (553)
T PRK12370 276 SLQQALKLL-----TQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTI 350 (553)
T ss_pred HHHHHHHHH-----HHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 456777765 567899999999999999877633 348999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhh
Q 013299 208 AGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKV 287 (446)
Q Consensus 208 ~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~ 287 (446)
.|++++|+..|++++ +++|+++.+++.+|.++. ..|++++|+.+++++++..|.+ ..+++.++.++..
T Consensus 351 ~g~~~~A~~~~~~Al--~l~P~~~~a~~~lg~~l~-~~G~~~eAi~~~~~Al~l~P~~-----~~~~~~~~~~~~~---- 418 (553)
T PRK12370 351 HSEYIVGSLLFKQAN--LLSPISADIKYYYGWNLF-MAGQLEEALQTINECLKLDPTR-----AAAGITKLWITYY---- 418 (553)
T ss_pred ccCHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCCC-----hhhHHHHHHHHHh----
Confidence 999999999999999 999999999998877655 5799999999999999965443 2333444444433
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcc
Q 013299 288 AITDFDRATRQAKALQALVSAARSTN-MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQK 366 (446)
Q Consensus 288 ~~~~~~~~~~~~eAl~~~~~al~~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g 366 (446)
.|++++|+..+++++ ..+ |+++.++.++|.++..+|++++|+..+++.....|++ ..++..++.++..+|
T Consensus 419 -------~g~~eeA~~~~~~~l-~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g 489 (553)
T PRK12370 419 -------HTGIDDAIRLGDELR-SQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITG-LIAVNLLYAEYCQNS 489 (553)
T ss_pred -------ccCHHHHHHHHHHHH-HhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchh-HHHHHHHHHHHhccH
Confidence 356899999999999 875 8899999999999999999999999999999999998 589999999999988
Q ss_pred CHHHHHHHHHHHHhh---cCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhccCCcchhh
Q 013299 367 RYEDAETILNAALDQ---TGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYK 433 (446)
Q Consensus 367 ~~~eA~~~~~~al~~---~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~~~~~~~~~~ 433 (446)
+ +|...+++.++. .| .++. ..+.++.-.|+.+.+.-. +++.+-......+..-+|.|-.
T Consensus 490 ~--~a~~~l~~ll~~~~~~~--~~~~---~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~ 551 (553)
T PRK12370 490 E--RALPTIREFLESEQRID--NNPG---LLPLVLVAHGEAIAEKMW-NKFKNEDNIWFKRWKQDPRLIK 551 (553)
T ss_pred H--HHHHHHHHHHHHhhHhh--cCch---HHHHHHHHHhhhHHHHHH-HHhhccchHhhhhhhcCchhhc
Confidence 4 777777776654 33 3322 377788889999988888 8888887777778888887754
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.8e-21 Score=177.37 Aligned_cols=330 Identities=17% Similarity=0.149 Sum_probs=241.2
Q ss_pred HHHHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHH
Q 013299 10 LEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRA 89 (446)
Q Consensus 10 ~~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~a 89 (446)
..++|.+|-+|..+|+-..|+..+.++|+. .|+ +..|...-|.+++++|.+++|+.-|+.+
T Consensus 72 Y~aifrRaT~yLAmGksk~al~Dl~rVlel--------KpD-----------F~~ARiQRg~vllK~Gele~A~~DF~~v 132 (504)
T KOG0624|consen 72 YQAIFRRATVYLAMGKSKAALQDLSRVLEL--------KPD-----------FMAARIQRGVVLLKQGELEQAEADFDQV 132 (504)
T ss_pred HHHHHHHHHHHhhhcCCccchhhHHHHHhc--------Ccc-----------HHHHHHHhchhhhhcccHHHHHHHHHHH
Confidence 456777888888888888888888887775 344 4567777789999999999999999999
Q ss_pred hCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHH
Q 013299 90 LLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSF 169 (446)
Q Consensus 90 l~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~ 169 (446)
|.-.|+..... ..+.+++..-- . .....++ ..+...|+...+|... ..+++..|+++..+...+.
T Consensus 133 l~~~~s~~~~~--eaqskl~~~~e--~-----~~l~~ql-~s~~~~GD~~~ai~~i-----~~llEi~~Wda~l~~~Rak 197 (504)
T KOG0624|consen 133 LQHEPSNGLVL--EAQSKLALIQE--H-----WVLVQQL-KSASGSGDCQNAIEMI-----THLLEIQPWDASLRQARAK 197 (504)
T ss_pred HhcCCCcchhH--HHHHHHHhHHH--H-----HHHHHHH-HHHhcCCchhhHHHHH-----HHHHhcCcchhHHHHHHHH
Confidence 99822211111 11222221100 0 0000011 1233467888888764 6678999999999999999
Q ss_pred HHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHH
Q 013299 170 AFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAE 249 (446)
Q Consensus 170 ~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~ 249 (446)
+|...|++..||..++.+-++..++.+.+|.++.+++..|+.+.++...+++| ++||++-..+-. |.+..+..
T Consensus 198 c~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL--KldpdHK~Cf~~-----YKklkKv~ 270 (504)
T KOG0624|consen 198 CYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECL--KLDPDHKLCFPF-----YKKLKKVV 270 (504)
T ss_pred HHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHH--ccCcchhhHHHH-----HHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999 899998764421 23233333
Q ss_pred HHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHH----HHHH
Q 013299 250 EGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILY----RLSL 325 (446)
Q Consensus 250 eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~----~lg~ 325 (446)
..+...+++++ .+++.++++..++++ +.+|..+.+.+ .+..
T Consensus 271 K~les~e~~ie----------------------------------~~~~t~cle~ge~vl-k~ep~~~~ir~~~~r~~c~ 315 (504)
T KOG0624|consen 271 KSLESAEQAIE----------------------------------EKHWTECLEAGEKVL-KNEPEETMIRYNGFRVLCT 315 (504)
T ss_pred HHHHHHHHHHh----------------------------------hhhHHHHHHHHHHHH-hcCCcccceeeeeeheeee
Confidence 44444443333 346788899999999 88888766554 4567
Q ss_pred HHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHH--HH-HHHHh-
Q 013299 326 EYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTK--AK-VQLVQ- 401 (446)
Q Consensus 326 ~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~--a~-~~~~~- 401 (446)
++..-+++.+|++.+.+++..+|++ +.+++..|..|+.-..|++|+..|++|++.+| ++-.+.--+ |. +....
T Consensus 316 C~~~d~~~~eAiqqC~evL~~d~~d-v~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~--sn~~~reGle~Akrlkkqs~ 392 (504)
T KOG0624|consen 316 CYREDEQFGEAIQQCKEVLDIDPDD-VQVLCDRAEAYLGDEMYDDAIHDYEKALELNE--SNTRAREGLERAKRLKKQSG 392 (504)
T ss_pred cccccCCHHHHHHHHHHHHhcCchH-HHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc--ccHHHHHHHHHHHHHHHHhc
Confidence 7778889999999999999999998 69999999999999999999999999999888 554443222 11 11111
Q ss_pred -------------CCHHHHHHHHHHHHHHH
Q 013299 402 -------------GQLKGAVETYTHLLAAL 418 (446)
Q Consensus 402 -------------g~~~eA~~~~~~~l~l~ 418 (446)
-...|-...|+++-.-|
T Consensus 393 kRDYYKILGVkRnAsKqEI~KAYRKlAqkW 422 (504)
T KOG0624|consen 393 KRDYYKILGVKRNASKQEITKAYRKLAQKW 422 (504)
T ss_pred cchHHHHhhhcccccHHHHHHHHHHHHHhc
Confidence 23357778888877766
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-21 Score=191.45 Aligned_cols=379 Identities=16% Similarity=0.119 Sum_probs=277.9
Q ss_pred HHHHHHHHhhhhcccChHHHHHHHHHH------HHHHHhhhcCCCCCCCCccccHHHH-HHHHHHHhHHHHHHhCChHHH
Q 013299 10 LEAIFLKAKCLQGLGRFKEAAQSCKVI------LDIVESSFAEGFPENLGADCKLQET-LNRAVELLPELWKLADAPRET 82 (446)
Q Consensus 10 ~~~~~~~g~~~~~~g~~eeA~~~~~~~------l~~~~~~~~~~~~~~~~~~~~l~~~-~~~a~~~l~~~~~~~g~~~eA 82 (446)
.-+.|..+.|+.++.++++|.....+. +.-.++.. .+.-+..+..-..... -......-|.+|....+.++|
T Consensus 82 ~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~-~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~a 160 (611)
T KOG1173|consen 82 IACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDA-ANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEA 160 (611)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhh-hceeccCcccccccccchhceeeeeeehhhhhccHHHH
Confidence 345677888888888888888776632 11111110 0000000000000000 112333456788999999999
Q ss_pred HHHHHHHhCCCCCCChHHHHHHHHHHH--------HHHhhhcCCCC------------------CC--cc----c---cc
Q 013299 83 IMSYRRALLPCWNLDAETTAKLQKEFA--------IFLLYCGGETC------------------PP--NL----R---SQ 127 (446)
Q Consensus 83 ~~~y~~al~~~~~~~~~~~~~l~~~~a--------~~ll~~~~~~~------------------~~--~~----~---~~ 127 (446)
-..|+++|.. |+.+...+..-.. ++++......+ +. +. + ..
T Consensus 161 r~~Y~~Al~~----D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~s 236 (611)
T KOG1173|consen 161 RDKYKEALLA----DAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDES 236 (611)
T ss_pred HHHHHHHHhc----chhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhh
Confidence 9999999998 8887654311111 11111110000 00 00 0 00
Q ss_pred c-------------CccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHhhCCCCCC
Q 013299 128 M-------------GSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILD-HLSFAFSIAGDLSSLATQIEELLPGIIN 193 (446)
Q Consensus 128 ~-------------~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~-~lg~~l~~~~~~~~A~~~~~~al~~~p~ 193 (446)
+ ...+....++.+-.. +.+.+++.+|-++.++- ++| ++.+.|+..+-...=-+.++..|+
T Consensus 237 l~~l~~~~dll~~~ad~~y~~c~f~~c~k-----it~~lle~dpfh~~~~~~~ia-~l~el~~~n~Lf~lsh~LV~~yP~ 310 (611)
T KOG1173|consen 237 LIGLAENLDLLAEKADRLYYGCRFKECLK-----ITEELLEKDPFHLPCLPLHIA-CLYELGKSNKLFLLSHKLVDLYPS 310 (611)
T ss_pred hhhhhhcHHHHHHHHHHHHHcChHHHHHH-----HhHHHHhhCCCCcchHHHHHH-HHHHhcccchHHHHHHHHHHhCCC
Confidence 0 001111222222222 23577888898887775 556 888999988888888899999999
Q ss_pred cHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHH
Q 013299 194 RKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTA 273 (446)
Q Consensus 194 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a 273 (446)
.+-.|+..|.-|+..|++.+|...|.++. .+||....+|+..|-.+ .-.+..++|+..|.+|-+..++.. ..
T Consensus 311 ~a~sW~aVg~YYl~i~k~seARry~SKat--~lD~~fgpaWl~fghsf-a~e~EhdQAmaaY~tAarl~~G~h-----lP 382 (611)
T KOG1173|consen 311 KALSWFAVGCYYLMIGKYSEARRYFSKAT--TLDPTFGPAWLAFGHSF-AGEGEHDQAMAAYFTAARLMPGCH-----LP 382 (611)
T ss_pred CCcchhhHHHHHHHhcCcHHHHHHHHHHh--hcCccccHHHHHHhHHh-hhcchHHHHHHHHHHHHHhccCCc-----ch
Confidence 99999999999999999999999999999 99999999999887764 446899999999999999887653 35
Q ss_pred HHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC----
Q 013299 274 NCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG---- 349 (446)
Q Consensus 274 ~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~---- 349 (446)
.+++|+-|.. .+.++-|...|..|+ .+.|.||-++..+|.+.+..+.+.+|+.+|++++..-+.
T Consensus 383 ~LYlgmey~~-----------t~n~kLAe~Ff~~A~-ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e 450 (611)
T KOG1173|consen 383 SLYLGMEYMR-----------TNNLKLAEKFFKQAL-AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNE 450 (611)
T ss_pred HHHHHHHHHH-----------hccHHHHHHHHHHHH-hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcccc
Confidence 6788887754 456889999999999 999999999999999999999999999999999943222
Q ss_pred CC--HHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhh
Q 013299 350 SN--LKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQ 421 (446)
Q Consensus 350 ~~--~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~ 421 (446)
.+ .+.|.+||.++.++++|++|+.+++++|.+.| .++..+-..|-++..+|+++.|++.|.++|.+.|++
T Consensus 451 ~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~--k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n 522 (611)
T KOG1173|consen 451 KIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSP--KDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDN 522 (611)
T ss_pred ccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCC--CchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCcc
Confidence 10 24688999999999999999999999999999 899999999999999999999999999999999875
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-20 Score=179.47 Aligned_cols=321 Identities=16% Similarity=0.118 Sum_probs=212.2
Q ss_pred HHHHHhHHHHHHhCChHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHh----hh-cCCCCCCcc----ccccCccccC
Q 013299 64 RAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLL----YC-GGETCPPNL----RSQMGSSFVP 134 (446)
Q Consensus 64 ~a~~~l~~~~~~~g~~~eA~~~y~~al~~~~~~~~~~~~~l~~~~a~~ll----~~-~~~~~~~~~----~~~~~~~~~~ 134 (446)
-.+.+-|.++.+.|..+.|+..|..++.. -|-+..+. ..+..... .. .....|.+. ...+..++.+
T Consensus 165 fllYL~Gvv~k~~~~~s~A~~sfv~~v~~----~P~~W~AW-leL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~e 239 (559)
T KOG1155|consen 165 FLLYLYGVVLKELGLLSLAIDSFVEVVNR----YPWFWSAW-LELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQE 239 (559)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHhc----CCcchHHH-HHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHH
Confidence 35667889999999999999999999987 44332211 11111100 00 000000000 0011112222
Q ss_pred CCcHHHHHHHHHHHHHHHHhhc-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHH
Q 013299 135 RNNIEEAILLLMILLRKVALKR-IEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLV 213 (446)
Q Consensus 135 ~~~~~eA~~~l~~~~~~~~l~~-~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~e 213 (446)
....++++.-. ...... -|.++-.-...|.+.....++++|+..|+..++.+|-..+-.-.+..+++-.++-.+
T Consensus 240 l~q~~e~~~k~-----e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 240 LHQHEEALQKK-----ERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHH-----HHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 22333333321 111111 344444444555555555555555555555555555554444444444444333211
Q ss_pred HHHHH-HHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchH
Q 013299 214 ALNLL-RTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDF 292 (446)
Q Consensus 214 A~~~~-~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~ 292 (446)
+..+ +.+. .+|-=-++.....|. ++.-.++.+.|+.+|++++++ +|. ...+|..+|.-|..+
T Consensus 315 -Ls~LA~~v~--~idKyR~ETCCiIaN-YYSlr~eHEKAv~YFkRALkL-Np~----~~~aWTLmGHEyvEm-------- 377 (559)
T KOG1155|consen 315 -LSYLAQNVS--NIDKYRPETCCIIAN-YYSLRSEHEKAVMYFKRALKL-NPK----YLSAWTLMGHEYVEM-------- 377 (559)
T ss_pred -HHHHHHHHH--HhccCCccceeeehh-HHHHHHhHHHHHHHHHHHHhc-Ccc----hhHHHHHhhHHHHHh--------
Confidence 1111 2222 122212222211222 233456789999999999995 444 267999999988664
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHH
Q 013299 293 DRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAE 372 (446)
Q Consensus 293 ~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~ 372 (446)
+....|+++|++|+ +++|.|..+||.||++|..++...=|+-+|++|+.+.|.++ ..|..||.+|.++++.+||+
T Consensus 378 ---KNt~AAi~sYRrAv-di~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDs-Rlw~aLG~CY~kl~~~~eAi 452 (559)
T KOG1155|consen 378 ---KNTHAAIESYRRAV-DINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDS-RLWVALGECYEKLNRLEEAI 452 (559)
T ss_pred ---cccHHHHHHHHHHH-hcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCch-HHHHHHHHHHHHhccHHHHH
Confidence 45689999999999 99999999999999999999999999999999999999995 99999999999999999999
Q ss_pred HHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 013299 373 TILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAAL 418 (446)
Q Consensus 373 ~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~ 418 (446)
.+|.+|+.... .+..+++.+|.++.++++.++|..+|++-++..
T Consensus 453 KCykrai~~~d--te~~~l~~LakLye~l~d~~eAa~~yek~v~~~ 496 (559)
T KOG1155|consen 453 KCYKRAILLGD--TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVS 496 (559)
T ss_pred HHHHHHHhccc--cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 99999999877 688999999999999999999999999999855
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-21 Score=192.46 Aligned_cols=243 Identities=17% Similarity=0.124 Sum_probs=206.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcC
Q 013299 165 DHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEY 244 (446)
Q Consensus 165 ~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~ 244 (446)
+..|..+.+.|+..+|+=+|+.+++.+|.+.++|..||.+....++-..|+..+++|+ +++|+|..+++.++ +++-.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl--~LdP~NleaLmaLA-VSytN 365 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCL--ELDPTNLEALMALA-VSYTN 365 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHH--hcCCccHHHHHHHH-HHHhh
Confidence 4679999999999999999999999999999999999999999999999999999999 99999999998876 55666
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhh-chHHHHHHHHHHHHHHHHHHHhhCC--CCHHHHH
Q 013299 245 PDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAI-TDFDRATRQAKALQALVSAARSTNM--RDLSILY 321 (446)
Q Consensus 245 ~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~-~~~~~~~~~~eAl~~~~~al~~~~P--~~~~a~~ 321 (446)
.|.-.+|..++.+=|..-|+. ..+...-... .... ........+..-.+.|-.+. ..+| .||+++.
T Consensus 366 eg~q~~Al~~L~~Wi~~~p~y---------~~l~~a~~~~-~~~~~~s~~~~~~l~~i~~~fLeaa-~~~~~~~DpdvQ~ 434 (579)
T KOG1125|consen 366 EGLQNQALKMLDKWIRNKPKY---------VHLVSAGENE-DFENTKSFLDSSHLAHIQELFLEAA-RQLPTKIDPDVQS 434 (579)
T ss_pred hhhHHHHHHHHHHHHHhCccc---------hhccccCccc-cccCCcCCCCHHHHHHHHHHHHHHH-HhCCCCCChhHHh
Confidence 778889999999988843331 1111110000 0000 00001234566778899999 8999 8999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHh
Q 013299 322 RLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQ 401 (446)
Q Consensus 322 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~ 401 (446)
.||.+|...|+++.|+.+|+.||..+|++ ...|+.||.++..-.+..||+..|.+|+++.| ....++|++|..++.+
T Consensus 435 ~LGVLy~ls~efdraiDcf~~AL~v~Pnd-~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP--~yVR~RyNlgIS~mNl 511 (579)
T KOG1125|consen 435 GLGVLYNLSGEFDRAVDCFEAALQVKPND-YLLWNRLGATLANGNRSEEAISAYNRALQLQP--GYVRVRYNLGISCMNL 511 (579)
T ss_pred hhHHHHhcchHHHHHHHHHHHHHhcCCch-HHHHHHhhHHhcCCcccHHHHHHHHHHHhcCC--Ceeeeehhhhhhhhhh
Confidence 99999999999999999999999999999 59999999999999999999999999999999 9999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhhhhhh
Q 013299 402 GQLKGAVETYTHLLAALQVQTKT 424 (446)
Q Consensus 402 g~~~eA~~~~~~~l~l~~~~~~~ 424 (446)
|-|+||+++|-.+|.+.++..+.
T Consensus 512 G~ykEA~~hlL~AL~mq~ks~~~ 534 (579)
T KOG1125|consen 512 GAYKEAVKHLLEALSMQRKSRNH 534 (579)
T ss_pred hhHHHHHHHHHHHHHhhhccccc
Confidence 99999999999999999884443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-19 Score=193.88 Aligned_cols=361 Identities=14% Similarity=0.047 Sum_probs=259.6
Q ss_pred HHHHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHH
Q 013299 10 LEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRA 89 (446)
Q Consensus 10 ~~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~a 89 (446)
++..|..|+...+.|++++|+..|+++++.. |.+. .++.-+..++...|+.++|+.+++++
T Consensus 34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~--------P~~~-----------~av~dll~l~~~~G~~~~A~~~~eka 94 (822)
T PRK14574 34 ADTQYDSLIIRARAGDTAPVLDYLQEESKAG--------PLQS-----------GQVDDWLQIAGWAGRDQEVIDVYERY 94 (822)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--------ccch-----------hhHHHHHHHHHHcCCcHHHHHHHHHh
Confidence 4667899999999999999999999999873 4321 01113335666779999999999999
Q ss_pred hCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHH
Q 013299 90 LLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSF 169 (446)
Q Consensus 90 l~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~ 169 (446)
+.. +|.... ....+|. ++..+|++++|+.++ +.+++..|++++++..++.
T Consensus 95 ~~p----~n~~~~-~llalA~--------------------ly~~~gdyd~Aiely-----~kaL~~dP~n~~~l~gLa~ 144 (822)
T PRK14574 95 QSS----MNISSR-GLASAAR--------------------AYRNEKRWDQALALW-----QSSLKKDPTNPDLISGMIM 144 (822)
T ss_pred ccC----CCCCHH-HHHHHHH--------------------HHHHcCCHHHHHHHH-----HHHHhhCCCCHHHHHHHHH
Confidence 832 222111 1111122 234567888888876 6677888999988888888
Q ss_pred HHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhc------
Q 013299 170 AFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGE------ 243 (446)
Q Consensus 170 ~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~------ 243 (446)
++...++.++|++.++++++.+|++... ..++.++...++..+|+..|++++ ..+|++..++.....++-.
T Consensus 145 ~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll--~~~P~n~e~~~~~~~~l~~~~~~~~ 221 (822)
T PRK14574 145 TQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEAV--RLAPTSEEVLKNHLEILQRNRIVEP 221 (822)
T ss_pred HHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHcCCcHH
Confidence 8888899999999999999998886554 556666666777777999999999 8888887765422211110
Q ss_pred -------CC-------------------------------C---CHHHHHHHHHHHHHHcCCCcc---h-----------
Q 013299 244 -------YP-------------------------------D---LAEEGATFASRALECLGDGCD---Q----------- 268 (446)
Q Consensus 244 -------~~-------------------------------~---~~~eA~~~~~~al~~~~~~~~---~----------- 268 (446)
.. + -.+.|+.-+++.+...++.++ .
T Consensus 222 a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~a 301 (822)
T PRK14574 222 ALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGA 301 (822)
T ss_pred HHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHH
Confidence 00 0 122344444444442222111 0
Q ss_pred -----------------------hhhHHHHHhhchhHhhhhh-------------h-----hc-h----------HHHHH
Q 013299 269 -----------------------MESTANCLLGISLSAQSKV-------------A-----IT-D----------FDRAT 296 (446)
Q Consensus 269 -----------------------~~~~a~~~lg~~~~~~~~~-------------~-----~~-~----------~~~~~ 296 (446)
++..+....|.+|...+.- . .. + +...+
T Consensus 302 L~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e 381 (822)
T PRK14574 302 LLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESE 381 (822)
T ss_pred HHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcc
Confidence 0111222223333222110 0 00 0 12457
Q ss_pred HHHHHHHHHHHHHHhhCC---------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Q 013299 297 RQAKALQALVSAARSTNM---------------RDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARI 361 (446)
Q Consensus 297 ~~~eAl~~~~~al~~~~P---------------~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~ 361 (446)
++++|..++++.. ...| +-.++...++.++.-.|++.+|++.+++.+...|.+ ...+..+|.+
T Consensus 382 ~~~~A~~~l~~~~-~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n-~~l~~~~A~v 459 (822)
T PRK14574 382 QLDKAYQFAVNYS-EQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPAN-QNLRIALASI 459 (822)
T ss_pred cHHHHHHHHHHHH-hcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHH
Confidence 8999999999999 7444 334677788999999999999999999999999999 4999999999
Q ss_pred HHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhcc
Q 013299 362 LSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFS 426 (446)
Q Consensus 362 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~~~ 426 (446)
+...|++.+|...++.++.++| ++..+.+.+|.+.+.+|++++|....+.+++..|++..+..
T Consensus 460 ~~~Rg~p~~A~~~~k~a~~l~P--~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~~ 522 (822)
T PRK14574 460 YLARDLPRKAEQELKAVESLAP--RSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQE 522 (822)
T ss_pred HHhcCCHHHHHHHHHHHhhhCC--ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHHH
Confidence 9999999999999999999999 89999999999999999999999999999999999886654
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.1e-20 Score=179.94 Aligned_cols=244 Identities=14% Similarity=0.018 Sum_probs=156.3
Q ss_pred HhCChHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHh
Q 013299 75 LADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVAL 154 (446)
Q Consensus 75 ~~g~~~eA~~~y~~al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~~l 154 (446)
..++.+.++..+.++|...+ .+|..........|. ++...|++++|+..+ +.++
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~-~~~~~~a~~~~~~g~--------------------~~~~~g~~~~A~~~~-----~~Al 91 (296)
T PRK11189 38 PTLQQEVILARLNQILASRD-LTDEERAQLHYERGV--------------------LYDSLGLRALARNDF-----SQAL 91 (296)
T ss_pred CchHHHHHHHHHHHHHcccc-CCcHhhHHHHHHHHH--------------------HHHHCCCHHHHHHHH-----HHHH
Confidence 34677788888888886421 133332222233332 334466777887765 4566
Q ss_pred hcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHH
Q 013299 155 KRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPAL 234 (446)
Q Consensus 155 ~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~ 234 (446)
+.+|+++.+|+.+|.++...|++++|++.|+++++++|++..+|+++|.+++..|++++|+..|++++ +.+|+++...
T Consensus 92 ~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al--~~~P~~~~~~ 169 (296)
T PRK11189 92 ALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFY--QDDPNDPYRA 169 (296)
T ss_pred HcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH--HhCCCCHHHH
Confidence 77788888888888888888888888888888888888888888888888888888888888888888 7888876422
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCC
Q 013299 235 LIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNM 314 (446)
Q Consensus 235 ~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P 314 (446)
+.. ......++.++|+..+++++...+++. .....+.+.+|.... ...++.+.+.++.++ +++|
T Consensus 170 ~~~--~l~~~~~~~~~A~~~l~~~~~~~~~~~-~~~~~~~~~lg~~~~------------~~~~~~~~~~~~~~~-~l~~ 233 (296)
T PRK11189 170 LWL--YLAESKLDPKQAKENLKQRYEKLDKEQ-WGWNIVEFYLGKISE------------ETLMERLKAGATDNT-ELAE 233 (296)
T ss_pred HHH--HHHHccCCHHHHHHHHHHHHhhCCccc-cHHHHHHHHccCCCH------------HHHHHHHHhcCCCcH-HHHH
Confidence 211 122345677888888877665433321 011122222222210 112445555556667 6777
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Q 013299 315 RDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARIL 362 (446)
Q Consensus 315 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~ 362 (446)
+.+++|+++|.++..+|++++|+.+|++|++++|.+-.+..+.+..+.
T Consensus 234 ~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~ 281 (296)
T PRK11189 234 RLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELA 281 (296)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 777888888888888888888888888888888633235555444433
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.1e-20 Score=179.95 Aligned_cols=239 Identities=13% Similarity=0.008 Sum_probs=180.4
Q ss_pred CCCcHHHHHHHHHHHHHHHHhhcCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCC
Q 013299 134 PRNNIEEAILLLMILLRKVALKRIE----WDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAG 209 (446)
Q Consensus 134 ~~~~~~eA~~~l~~~~~~~~l~~~p----~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 209 (446)
+.+..+.++..+ ..++...| ..+..|+.+|.++...|++++|+..|+++++++|+++.+|+++|.++...|
T Consensus 38 ~~~~~e~~i~~~-----~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g 112 (296)
T PRK11189 38 PTLQQEVILARL-----NQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAG 112 (296)
T ss_pred CchHHHHHHHHH-----HHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC
Confidence 345567777664 34554334 346789999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhh
Q 013299 210 EDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAI 289 (446)
Q Consensus 210 ~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~ 289 (446)
++++|+..|++++ +++|++..++..+|.+++ ..|++++|+..++++++..|.++ ....|..++.
T Consensus 113 ~~~~A~~~~~~Al--~l~P~~~~a~~~lg~~l~-~~g~~~eA~~~~~~al~~~P~~~---~~~~~~~l~~---------- 176 (296)
T PRK11189 113 NFDAAYEAFDSVL--ELDPTYNYAYLNRGIALY-YGGRYELAQDDLLAFYQDDPNDP---YRALWLYLAE---------- 176 (296)
T ss_pred CHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHH----------
Confidence 9999999999999 999999999998876654 47999999999999999655442 1112222211
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH--HHH----HHHHHhhcCCCCHHHHHHHHHHHH
Q 013299 290 TDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAA--HYY----AKMLLKLEGGSNLKGWLLMARILS 363 (446)
Q Consensus 290 ~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A--~~~----~~~al~l~P~~~~~~~~~la~~~~ 363 (446)
..+++++|+..|++++ ...+.+ .|. .+.++...|++.++ +.. ++++++++|+. .++|+++|.++.
T Consensus 177 ----~~~~~~~A~~~l~~~~-~~~~~~--~~~-~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~-~ea~~~Lg~~~~ 247 (296)
T PRK11189 177 ----SKLDPKQAKENLKQRY-EKLDKE--QWG-WNIVEFYLGKISEETLMERLKAGATDNTELAERL-CETYFYLAKYYL 247 (296)
T ss_pred ----ccCCHHHHHHHHHHHH-hhCCcc--ccH-HHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHH-HHHHHHHHHHHH
Confidence 1346899999998877 554322 222 35555566665433 322 23344777787 499999999999
Q ss_pred HccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCC
Q 013299 364 AQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQ 403 (446)
Q Consensus 364 ~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~ 403 (446)
.+|++++|+.+|++|++.+|. ++.+..+.+..+....++
T Consensus 248 ~~g~~~~A~~~~~~Al~~~~~-~~~e~~~~~~e~~~~~~~ 286 (296)
T PRK11189 248 SLGDLDEAAALFKLALANNVY-NFVEHRYALLELALLGQD 286 (296)
T ss_pred HCCCHHHHHHHHHHHHHhCCc-hHHHHHHHHHHHHHHHhh
Confidence 999999999999999999963 567766666555544433
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.6e-20 Score=179.21 Aligned_cols=225 Identities=13% Similarity=0.014 Sum_probs=195.9
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCC
Q 013299 151 KVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKC 230 (446)
Q Consensus 151 ~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~ 230 (446)
.......|+.+-.|+-+|.-|...|++.+|..+|.++..+||....+|..+|.++...|..++|+.+|..|- ++-|+.
T Consensus 302 h~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAa--rl~~G~ 379 (611)
T KOG1173|consen 302 HKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAA--RLMPGC 379 (611)
T ss_pred HHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHH--HhccCC
Confidence 456788999999999999999999999999999999999999999999999999999999999999999999 899997
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHH
Q 013299 231 LPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAAR 310 (446)
Q Consensus 231 ~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~ 310 (446)
....+++|- -+...+..+-|..+|..|+.+.|.+ +.+...+|.+.+.. +.+.+|+.+|++++
T Consensus 380 hlP~LYlgm-ey~~t~n~kLAe~Ff~~A~ai~P~D-----plv~~Elgvvay~~-----------~~y~~A~~~f~~~l- 441 (611)
T KOG1173|consen 380 HLPSLYLGM-EYMRTNNLKLAEKFFKQALAIAPSD-----PLVLHELGVVAYTY-----------EEYPEALKYFQKAL- 441 (611)
T ss_pred cchHHHHHH-HHHHhccHHHHHHHHHHHHhcCCCc-----chhhhhhhheeehH-----------hhhHHHHHHHHHHH-
Confidence 666665554 4556789999999999999976665 46788899887643 46899999999988
Q ss_pred hhCCC-CH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013299 311 STNMR-DL------SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTG 383 (446)
Q Consensus 311 ~~~P~-~~------~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 383 (446)
+.-+. +. ..+.|||.++.+.+++++|+..|++++.+.|.+ +.++..+|.|+..+|+++.|++.|.++|.+.|
T Consensus 442 ~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~-~~~~asig~iy~llgnld~Aid~fhKaL~l~p 520 (611)
T KOG1173|consen 442 EVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKD-ASTHASIGYIYHLLGNLDKAIDHFHKALALKP 520 (611)
T ss_pred HHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCc-hhHHHHHHHHHHHhcChHHHHHHHHHHHhcCC
Confidence 54332 22 347899999999999999999999999999999 59999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHH
Q 013299 384 KWEQGELLRTKAKVQ 398 (446)
Q Consensus 384 ~~~~~~~~~~~a~~~ 398 (446)
++..+--.++.+.
T Consensus 521 --~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 521 --DNIFISELLKLAI 533 (611)
T ss_pred --ccHHHHHHHHHHH
Confidence 7766655555443
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.7e-20 Score=168.06 Aligned_cols=204 Identities=18% Similarity=0.143 Sum_probs=142.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHH
Q 013299 159 WDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIAS 238 (446)
Q Consensus 159 ~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~ 238 (446)
..+.++..+|..+...|++++|++.++++++.+|++..++..+|.++...|++++|+..|++++ ..+|++..++..++
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al--~~~~~~~~~~~~~~ 106 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRAL--TLNPNNGDVLNNYG 106 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH--hhCCCCHHHHHHHH
Confidence 3467888899999999999999999999999999999999999999999999999999999999 88888877766655
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHH
Q 013299 239 KICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLS 318 (446)
Q Consensus 239 ~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~ 318 (446)
.++. ..|++++|+.++++++.. + ..|..+.
T Consensus 107 ~~~~-~~g~~~~A~~~~~~~~~~-~------------------------------------------------~~~~~~~ 136 (234)
T TIGR02521 107 TFLC-QQGKYEQAMQQFEQAIED-P------------------------------------------------LYPQPAR 136 (234)
T ss_pred HHHH-HcccHHHHHHHHHHHHhc-c------------------------------------------------ccccchH
Confidence 5433 345555555555555541 1 1133445
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHH
Q 013299 319 ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQ 398 (446)
Q Consensus 319 a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~ 398 (446)
+++++|.++...|++++|...+.+++..+|+++ .++..+|.++...|++++|+.++++++...| ++...++.++.++
T Consensus 137 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~ 213 (234)
T TIGR02521 137 SLENAGLCALKAGDFDKAEKYLTRALQIDPQRP-ESLLELAELYYLRGQYKDARAYLERYQQTYN--QTAESLWLGIRIA 213 (234)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHH
Confidence 555666666666666666666666666666653 6666666666666666666666666666655 5555566666666
Q ss_pred HHhCCHHHHHHHHHHHHHH
Q 013299 399 LVQGQLKGAVETYTHLLAA 417 (446)
Q Consensus 399 ~~~g~~~eA~~~~~~~l~l 417 (446)
...|+.++|....+.+..+
T Consensus 214 ~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 214 RALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHhhHHHHHHHHHHHHhh
Confidence 6666666666665555443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.1e-19 Score=173.91 Aligned_cols=377 Identities=12% Similarity=0.009 Sum_probs=257.8
Q ss_pred HHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCC--C-----------------ccccHHHHHHHHHHHhHHHH
Q 013299 13 IFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENL--G-----------------ADCKLQETLNRAVELLPELW 73 (446)
Q Consensus 13 ~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~--~-----------------~~~~l~~~~~~a~~~l~~~~ 73 (446)
.-.+|.+.+..|+|+.|+..|-.+|.+.+ .++.-.+ + .-.++.+.+..++.+.|..+
T Consensus 5 ~k~kgnaa~s~~d~~~ai~~~t~ai~l~p----~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~ 80 (539)
T KOG0548|consen 5 LKEKGNAAFSSGDFETAIRLFTEAIMLSP----TNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAAL 80 (539)
T ss_pred HHHHHHhhcccccHHHHHHHHHHHHccCC----CccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHH
Confidence 44688999999999999999999988742 2211100 0 11234455778999999999
Q ss_pred HHhCChHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHhhh---cCCCCCCc----------cc---------------
Q 013299 74 KLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYC---GGETCPPN----------LR--------------- 125 (446)
Q Consensus 74 ~~~g~~~eA~~~y~~al~~~~~~~~~~~~~l~~~~a~~ll~~---~~~~~~~~----------~~--------------- 125 (446)
+-.|+|++|+..|.+.|+. +|.|.. +...++.+.... +.....|. ..
T Consensus 81 ~~lg~~~eA~~ay~~GL~~----d~~n~~-L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~ 155 (539)
T KOG0548|consen 81 FGLGDYEEAILAYSEGLEK----DPSNKQ-LKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEII 155 (539)
T ss_pred HhcccHHHHHHHHHHHhhc----CCchHH-HHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHh
Confidence 9999999999999999999 887744 333333332111 00000000 00
Q ss_pred ----cccCccccCCCcHHHHHHHHHHH----HH-HHHh----hcCC---------------------CCHHHHHHHHHHH
Q 013299 126 ----SQMGSSFVPRNNIEEAILLLMIL----LR-KVAL----KRIE---------------------WDPSILDHLSFAF 171 (446)
Q Consensus 126 ----~~~~~~~~~~~~~~eA~~~l~~~----~~-~~~l----~~~p---------------------~~~~~~~~lg~~l 171 (446)
.++ ..+..-.+...+...++.. +. .... ...| .-....-.+|.+.
T Consensus 156 ~~~p~~l-~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaa 234 (539)
T KOG0548|consen 156 QKNPTSL-KLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAA 234 (539)
T ss_pred hcCcHhh-hcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHH
Confidence 000 1111112223332222110 00 0000 0011 0122445899999
Q ss_pred HhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHH------HHHHHHHhcCC
Q 013299 172 SIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPAL------LIASKICGEYP 245 (446)
Q Consensus 172 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~------~~~~~~~~~~~ 245 (446)
....+++.|++.|..++.++ .+...+.+.+.+|+..|.+.+++.....++ +..-..-.-+ +...+..+...
T Consensus 235 ykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~--E~gre~rad~klIak~~~r~g~a~~k~ 311 (539)
T KOG0548|consen 235 YKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAV--EVGRELRADYKLIAKALARLGNAYTKR 311 (539)
T ss_pred HHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHH--HHhHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 99999999999999999999 999999999999999999999998888888 3332211111 11122334556
Q ss_pred CCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 013299 246 DLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSL 325 (446)
Q Consensus 246 ~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~ 325 (446)
++++.|+.+|.+++..... +.+. .+....++++...+... -++|.-..-...-|.
T Consensus 312 ~~~~~ai~~~~kaLte~Rt-------------~~~l-----------s~lk~~Ek~~k~~e~~a-~~~pe~A~e~r~kGn 366 (539)
T KOG0548|consen 312 EDYEGAIKYYQKALTEHRT-------------PDLL-----------SKLKEAEKALKEAERKA-YINPEKAEEEREKGN 366 (539)
T ss_pred HhHHHHHHHHHHHhhhhcC-------------HHHH-----------HHHHHHHHHHHHHHHHH-hhChhHHHHHHHHHH
Confidence 8899999999998874221 1111 12345677777777777 788888777777788
Q ss_pred HHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHH
Q 013299 326 EYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLK 405 (446)
Q Consensus 326 ~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~ 405 (446)
.+...|+|..|+.+|.+|+..+|++ ...+.+.|.+|.++|.+..|+..++++++++| +...+|+..|.++..+.+++
T Consensus 367 e~Fk~gdy~~Av~~YteAIkr~P~D-a~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p--~~~kgy~RKg~al~~mk~yd 443 (539)
T KOG0548|consen 367 EAFKKGDYPEAVKHYTEAIKRDPED-ARLYSNRAACYLKLGEYPEALKDAKKCIELDP--NFIKAYLRKGAALRAMKEYD 443 (539)
T ss_pred HHHhccCHHHHHHHHHHHHhcCCch-hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCc--hHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888888 48888888888888888888888888888888 78888888888888888888
Q ss_pred HHHHHHHHHHHHHhhhhhhccCCcc
Q 013299 406 GAVETYTHLLAALQVQTKTFSSDKR 430 (446)
Q Consensus 406 eA~~~~~~~l~l~~~~~~~~~~~~~ 430 (446)
.|+++|..+++++|.+.+..+...+
T Consensus 444 kAleay~eale~dp~~~e~~~~~~r 468 (539)
T KOG0548|consen 444 KALEAYQEALELDPSNAEAIDGYRR 468 (539)
T ss_pred HHHHHHHHHHhcCchhHHHHHHHHH
Confidence 8888888888888877766654433
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.8e-20 Score=183.95 Aligned_cols=254 Identities=15% Similarity=0.103 Sum_probs=200.5
Q ss_pred cccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCC
Q 013299 131 SFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGE 210 (446)
Q Consensus 131 ~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 210 (446)
.+...|.+-+|+.++ ++++.++|.+.++|..||.+....++-..||.+++++++++|+|.++...||.+|...|.
T Consensus 294 ~lm~nG~L~~A~Laf-----EAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAF-----EAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHhcCCchHHHHHH-----HHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 455667777887765 778899999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCCCCCCChHHHHHHHHH--H------hcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhH
Q 013299 211 DLVALNLLRTLLSGSEDPKCLPALLIASKI--C------GEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLS 282 (446)
Q Consensus 211 ~~eA~~~~~~al~~~~~P~~~~a~~~~~~~--~------~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~ 282 (446)
-.+|+.++.+.| ...|....... ++. . +.....+..-...|-.+....+.. ..+.++..||+.|.
T Consensus 369 q~~Al~~L~~Wi--~~~p~y~~l~~--a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~---~DpdvQ~~LGVLy~ 441 (579)
T KOG1125|consen 369 QNQALKMLDKWI--RNKPKYVHLVS--AGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTK---IDPDVQSGLGVLYN 441 (579)
T ss_pred HHHHHHHHHHHH--HhCccchhccc--cCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCC---CChhHHhhhHHHHh
Confidence 999999999999 67775432111 000 0 000011222233344444434421 12678999999986
Q ss_pred hhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Q 013299 283 AQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARIL 362 (446)
Q Consensus 283 ~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~ 362 (446)
.. +.+++|+.+|+.|+ ..+|+|...|+.||-+++...+.++|+..|++|+.|.|.. +.++++||..+
T Consensus 442 ls-----------~efdraiDcf~~AL-~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~y-VR~RyNlgIS~ 508 (579)
T KOG1125|consen 442 LS-----------GEFDRAVDCFEAAL-QVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGY-VRVRYNLGISC 508 (579)
T ss_pred cc-----------hHHHHHHHHHHHHH-hcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCe-eeeehhhhhhh
Confidence 53 67999999999999 9999999999999999999999999999999999999999 69999999999
Q ss_pred HHccCHHHHHHHHHHHHhhcCCC----C----cHHHHHHHHHHHHHhCCHHHHHH
Q 013299 363 SAQKRYEDAETILNAALDQTGKW----E----QGELLRTKAKVQLVQGQLKGAVE 409 (446)
Q Consensus 363 ~~~g~~~eA~~~~~~al~~~p~~----~----~~~~~~~~a~~~~~~g~~~eA~~ 409 (446)
+.+|-|+||+.+|-.||.+.++. + +-.+|-++-.++..+++.|-+..
T Consensus 509 mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 509 MNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred hhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 99999999999999999887631 1 12455555566666666654443
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.6e-21 Score=185.17 Aligned_cols=241 Identities=15% Similarity=0.051 Sum_probs=108.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCC--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHH
Q 013299 157 IEWDPSILDHLSFAFSIAGDLSSLATQIEELLPG--IINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPAL 234 (446)
Q Consensus 157 ~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~ 234 (446)
.|. ... ..++.++...|++++|++++++.+.. .|+++..|..+|.+....|++++|+..|++++ ..+|.++..+
T Consensus 6 ~~~-~~~-l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~--~~~~~~~~~~ 81 (280)
T PF13429_consen 6 GPS-EEA-LRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLL--ASDKANPQDY 81 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccc-ccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--cccccccccc
Confidence 455 333 36799999999999999999766544 49999999999999999999999999999999 8899888877
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhC-
Q 013299 235 LIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTN- 313 (446)
Q Consensus 235 ~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~- 313 (446)
..++.+ ...+++++|+..++++.+.. +++ ..+.....++. +.++++++...++++. ...
T Consensus 82 ~~l~~l--~~~~~~~~A~~~~~~~~~~~-~~~-----~~l~~~l~~~~-----------~~~~~~~~~~~l~~~~-~~~~ 141 (280)
T PF13429_consen 82 ERLIQL--LQDGDPEEALKLAEKAYERD-GDP-----RYLLSALQLYY-----------RLGDYDEAEELLEKLE-ELPA 141 (280)
T ss_dssp --------------------------------------------H-HH-----------HTT-HHHHHHHHHHHH-H-T-
T ss_pred cccccc--cccccccccccccccccccc-ccc-----chhhHHHHHHH-----------HHhHHHHHHHHHHHHH-hccC
Confidence 666655 35689999999999988743 322 22222333332 2456889999999977 666
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHH
Q 013299 314 -MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLR 392 (446)
Q Consensus 314 -P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~ 392 (446)
|+++..|+.+|.++.+.|+.++|+..|+++++++|++ ..++..+++++...|+++++...++...+..| +++..+.
T Consensus 142 ~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~-~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~--~~~~~~~ 218 (280)
T PF13429_consen 142 APDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDD-PDARNALAWLLIDMGDYDEAREALKRLLKAAP--DDPDLWD 218 (280)
T ss_dssp --T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-H--TSCCHCH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHCCChHHHHHHHHHHHHHCc--CHHHHHH
Confidence 7899999999999999999999999999999999999 49999999999999999999999998888878 7778899
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhh
Q 013299 393 TKAKVQLVQGQLKGAVETYTHLLAALQVQTKT 424 (446)
Q Consensus 393 ~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~ 424 (446)
.+|.++...|++++|+..|++++...|+++..
T Consensus 219 ~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~ 250 (280)
T PF13429_consen 219 ALAAAYLQLGRYEEALEYLEKALKLNPDDPLW 250 (280)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHH
T ss_pred HHHHHhcccccccccccccccccccccccccc
Confidence 99999999999999999999999998765443
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.1e-18 Score=173.65 Aligned_cols=301 Identities=11% Similarity=-0.030 Sum_probs=226.7
Q ss_pred hHHHHHHhCChHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHH
Q 013299 69 LPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMIL 148 (446)
Q Consensus 69 l~~~~~~~g~~~eA~~~y~~al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~ 148 (446)
-|.+....|+++.|.+...++.+..+ +|.. .. ...|. +...+|++++|...+
T Consensus 90 ~glla~~~g~~~~A~~~l~~~~~~~~--~~~~-~~--llaA~--------------------aa~~~g~~~~A~~~l--- 141 (409)
T TIGR00540 90 EALLKLAEGDYAKAEKLIAKNADHAA--EPVL-NL--IKAAE--------------------AAQQRGDEARANQHL--- 141 (409)
T ss_pred HHHHHHhCCCHHHHHHHHHHHhhcCC--CCHH-HH--HHHHH--------------------HHHHCCCHHHHHHHH---
Confidence 45677899999999999999988721 2211 00 11111 233468899998876
Q ss_pred HHHHHhhcCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCC
Q 013299 149 LRKVALKRIEWDP-SILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSED 227 (446)
Q Consensus 149 ~~~~~l~~~p~~~-~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~ 227 (446)
..+.+..|++. .+....+.++...|+++.|.+.+++.++..|+++.++..++.++...|++++|+..+++.+ +..
T Consensus 142 --~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~--k~~ 217 (409)
T TIGR00540 142 --EEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMA--KAG 217 (409)
T ss_pred --HHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH--HcC
Confidence 34456678775 5666679999999999999999999999999999999999999999999999999999999 554
Q ss_pred CCChHHH---HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHH
Q 013299 228 PKCLPAL---LIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQA 304 (446)
Q Consensus 228 P~~~~a~---~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~ 304 (446)
+.++... ...+..-....+..+++...+.++.+..|.. .......+..++..+.. .|++++|++.
T Consensus 218 ~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~-~~~~~~l~~~~a~~l~~-----------~g~~~~A~~~ 285 (409)
T TIGR00540 218 LFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRH-RRHNIALKIALAEHLID-----------CDDHDSAQEI 285 (409)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHH-HhCCHHHHHHHHHHHHH-----------CCChHHHHHH
Confidence 4333322 1111111111223344556777777755421 01125677777777755 4678999999
Q ss_pred HHHHHHhhCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCH--HHHHHHHHHHHHccCHHHHHHHHH--HH
Q 013299 305 LVSAARSTNMRDLSIL--YRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNL--KGWLLMARILSAQKRYEDAETILN--AA 378 (446)
Q Consensus 305 ~~~al~~~~P~~~~a~--~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~--~~~~~la~~~~~~g~~~eA~~~~~--~a 378 (446)
+++++ +..|++.... ..........++.+.+++.++++++.+|++ . ..+..+|+++..+|++++|..+++ ++
T Consensus 286 l~~~l-~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~-~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a 363 (409)
T TIGR00540 286 IFDGL-KKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDK-PKCCINRALGQLLMKHGEFIEAADAFKNVAA 363 (409)
T ss_pred HHHHH-hhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCC-hhHHHHHHHHHHHHHcccHHHHHHHHHHhHH
Confidence 99999 9999998642 233334445688999999999999999998 6 677899999999999999999999 67
Q ss_pred HhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 013299 379 LDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAAL 418 (446)
Q Consensus 379 l~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~ 418 (446)
++..| ++. .+..+|.++.+.|+.++|.++|++++.+.
T Consensus 364 ~~~~p--~~~-~~~~La~ll~~~g~~~~A~~~~~~~l~~~ 400 (409)
T TIGR00540 364 CKEQL--DAN-DLAMAADAFDQAGDKAEAAAMRQDSLGLM 400 (409)
T ss_pred hhcCC--CHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 78889 554 46699999999999999999999998764
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.1e-19 Score=180.57 Aligned_cols=311 Identities=16% Similarity=0.104 Sum_probs=232.2
Q ss_pred hHHHHHHhCChHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHH
Q 013299 69 LPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMIL 148 (446)
Q Consensus 69 l~~~~~~~g~~~eA~~~y~~al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~ 148 (446)
.++.++..|++++|+.++.++|++ +|.+.... . .++.+|..+|+.+++....+.
T Consensus 145 eAN~lfarg~~eeA~~i~~EvIkq----dp~~~~ay-~--------------------tL~~IyEqrGd~eK~l~~~ll- 198 (895)
T KOG2076|consen 145 EANNLFARGDLEEAEEILMEVIKQ----DPRNPIAY-Y--------------------TLGEIYEQRGDIEKALNFWLL- 198 (895)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHh----CccchhhH-H--------------------HHHHHHHHcccHHHHHHHHHH-
Confidence 346677889999999999999999 76654322 2 233467788999999876532
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCC
Q 013299 149 LRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDP 228 (446)
Q Consensus 149 ~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P 228 (446)
+...+|.|.+.|..++....++|++.+|.-||.+||+.+|.+....+..+.+|.++|++..|...|.+.+ .++|
T Consensus 199 ----AAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~--~~~p 272 (895)
T KOG2076|consen 199 ----AAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLL--QLDP 272 (895)
T ss_pred ----HHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHH--hhCC
Confidence 3467899999999999999999999999999999999999999999999999999999999999999999 8888
Q ss_pred CC----hHHHHHH-HHHHhcCCCCHHHHHHHHHHHHHHcCC--CcchhhhHHHHHhhc-hhHhhhhhh----h-------
Q 013299 229 KC----LPALLIA-SKICGEYPDLAEEGATFASRALECLGD--GCDQMESTANCLLGI-SLSAQSKVA----I------- 289 (446)
Q Consensus 229 ~~----~~a~~~~-~~~~~~~~~~~~eA~~~~~~al~~~~~--~~~~~~~~a~~~lg~-~~~~~~~~~----~------- 289 (446)
.. ....... +.. +...+..+.|++.++.++..... ..+.....+-..+.. .+...++.. .
T Consensus 273 ~~d~er~~d~i~~~~~~-~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~ 351 (895)
T KOG2076|consen 273 PVDIERIEDLIRRVAHY-FITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDD 351 (895)
T ss_pred chhHHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCCh
Confidence 21 1111111 222 33445558899999988873221 111111111111111 011100000 0
Q ss_pred --ch------------------------H---------HHHHHHHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCH
Q 013299 290 --TD------------------------F---------DRATRQAKALQALVSAARSTNM-RDLSILYRLSLEYAEQRKL 333 (446)
Q Consensus 290 --~~------------------------~---------~~~~~~~eAl~~~~~al~~~~P-~~~~a~~~lg~~~~~~~~~ 333 (446)
.+ . .+.....+++..+..-- ...| ++++.++.++.++...|++
T Consensus 352 ~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~ 430 (895)
T KOG2076|consen 352 SEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKY 430 (895)
T ss_pred hhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccH
Confidence 00 0 11223345555543322 2223 4678999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 013299 334 NAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTH 413 (446)
Q Consensus 334 ~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~ 413 (446)
.+|+.++..++...+.....+|+.+|.+|+.+|+|++|+.+|+++|...| ++.++...++.++.++|++++|++.+.+
T Consensus 431 ~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p--~~~D~Ri~Lasl~~~~g~~EkalEtL~~ 508 (895)
T KOG2076|consen 431 KEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAP--DNLDARITLASLYQQLGNHEKALETLEQ 508 (895)
T ss_pred HHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCC--CchhhhhhHHHHHHhcCCHHHHHHHHhc
Confidence 99999999999988876557999999999999999999999999999999 9999999999999999999999999988
Q ss_pred HH
Q 013299 414 LL 415 (446)
Q Consensus 414 ~l 415 (446)
..
T Consensus 509 ~~ 510 (895)
T KOG2076|consen 509 II 510 (895)
T ss_pred cc
Confidence 66
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-18 Score=165.49 Aligned_cols=264 Identities=15% Similarity=0.088 Sum_probs=224.0
Q ss_pred ccccCCCcHHHHHHHHHHHHHHHHhhcCC-CCHHHHHHHHHHHHhcC--CHHHHHHHHHhhCCCCCCcHHHHHHHHHHHH
Q 013299 130 SSFVPRNNIEEAILLLMILLRKVALKRIE-WDPSILDHLSFAFSIAG--DLSSLATQIEELLPGIINRKERYHILALCYY 206 (446)
Q Consensus 130 ~~~~~~~~~~eA~~~l~~~~~~~~l~~~p-~~~~~~~~lg~~l~~~~--~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 206 (446)
+-+..+|+++.|+..+.. .-+++. ....+-.+|...+..+| ++..|.++-+.++.++.-++.+..+-|.+-+
T Consensus 427 ~~~lk~~d~~~aieilkv-----~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f 501 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKV-----FEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAF 501 (840)
T ss_pred HHHHhccCHHHHHHHHHH-----HHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceee
Confidence 456788999999987632 222222 23345566666666643 7889999999999999999999999999999
Q ss_pred HCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhh
Q 013299 207 GAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSK 286 (446)
Q Consensus 207 ~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~ 286 (446)
..|+++.|...|+++| .-+....+++++.| +.+..+|+.++|+.+|-+.-.++-.+ ..+++.++.+|..
T Consensus 502 ~ngd~dka~~~ykeal--~ndasc~ealfnig-lt~e~~~~ldeald~f~klh~il~nn-----~evl~qianiye~--- 570 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEAL--NNDASCTEALFNIG-LTAEALGNLDEALDCFLKLHAILLNN-----AEVLVQIANIYEL--- 570 (840)
T ss_pred ecCcHHHHHHHHHHHH--cCchHHHHHHHHhc-ccHHHhcCHHHHHHHHHHHHHHHHhh-----HHHHHHHHHHHHH---
Confidence 9999999999999999 77888888888765 44677899999999999887765443 6788888888854
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcc
Q 013299 287 VAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQK 366 (446)
Q Consensus 287 ~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g 366 (446)
+.+..+|++++-++. .+-|+||.++..||.+|-+.|+-.+|.+++-...+-.|.+ .+...-||..|....
T Consensus 571 --------led~aqaie~~~q~~-slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~n-ie~iewl~ayyidtq 640 (840)
T KOG2003|consen 571 --------LEDPAQAIELLMQAN-SLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCN-IETIEWLAAYYIDTQ 640 (840)
T ss_pred --------hhCHHHHHHHHHHhc-ccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcc-hHHHHHHHHHHHhhH
Confidence 456789999999999 9999999999999999999999999999999999999999 598888999999999
Q ss_pred CHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhh
Q 013299 367 RYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQ 421 (446)
Q Consensus 367 ~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~ 421 (446)
-.+.|+.++++|--..| +........+.|+.+.|++..|++.|+..-.-.|++
T Consensus 641 f~ekai~y~ekaaliqp--~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfped 693 (840)
T KOG2003|consen 641 FSEKAINYFEKAALIQP--NQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPED 693 (840)
T ss_pred HHHHHHHHHHHHHhcCc--cHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccc
Confidence 99999999999999999 777777888999999999999999999876666543
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.84 E-value=8e-18 Score=169.52 Aligned_cols=303 Identities=12% Similarity=0.010 Sum_probs=228.3
Q ss_pred HHHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHh
Q 013299 11 EAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRAL 90 (446)
Q Consensus 11 ~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~al 90 (446)
......|......|++++|.+...++.+. .|.. .......+.++.++|+++.|..+|.++.
T Consensus 85 ~~~~~~glla~~~g~~~~A~~~l~~~~~~--------~~~~-----------~~~~llaA~aa~~~g~~~~A~~~l~~a~ 145 (409)
T TIGR00540 85 QKQTEEALLKLAEGDYAKAEKLIAKNADH--------AAEP-----------VLNLIKAAEAAQQRGDEARANQHLEEAA 145 (409)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhc--------CCCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34456888899999999999998876654 2321 1234456788999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Q 013299 91 LPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFA 170 (446)
Q Consensus 91 ~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~ 170 (446)
+. .|++...+....+.+ +..+|++++|...+ +...+..|+++.++..++.+
T Consensus 146 ~~----~p~~~l~~~~~~a~l--------------------~l~~~~~~~Al~~l-----~~l~~~~P~~~~~l~ll~~~ 196 (409)
T TIGR00540 146 EL----AGNDNILVEIARTRI--------------------LLAQNELHAARHGV-----DKLLEMAPRHKEVLKLAEEA 196 (409)
T ss_pred Hh----CCcCchHHHHHHHHH--------------------HHHCCCHHHHHHHH-----HHHHHhCCCCHHHHHHHHHH
Confidence 87 333211111222332 33478899998876 66778889999999999999
Q ss_pred HHhcCCHHHHHHHHHhhCCCCCCcHHHHH----HHHHHHHHCCChHHHHHHHHHHhcCCCCC----CChHHHHHHHHHHh
Q 013299 171 FSIAGDLSSLATQIEELLPGIINRKERYH----ILALCYYGAGEDLVALNLLRTLLSGSEDP----KCLPALLIASKICG 242 (446)
Q Consensus 171 l~~~~~~~~A~~~~~~al~~~p~~~~~~~----~lg~~~~~~g~~~eA~~~~~~al~~~~~P----~~~~a~~~~~~~~~ 242 (446)
+...|++++|.+.+++..+..+.++.... ....-+...+..+++...+.++. ...| +++.+++..+.. +
T Consensus 197 ~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~--~~~p~~~~~~~~l~~~~a~~-l 273 (409)
T TIGR00540 197 YIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW--KNQPRHRRHNIALKIALAEH-L 273 (409)
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH--HHCCHHHhCCHHHHHHHHHH-H
Confidence 99999999999999999977555444332 22333345555666677888888 6777 588888887775 4
Q ss_pred cCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCH--HHH
Q 013299 243 EYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDL--SIL 320 (446)
Q Consensus 243 ~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~--~a~ 320 (446)
...|+.++|+..++++++..|++..... .......... .++.+++++.+++++ +.+|+|+ ..+
T Consensus 274 ~~~g~~~~A~~~l~~~l~~~pd~~~~~~---~~l~~~~~l~-----------~~~~~~~~~~~e~~l-k~~p~~~~~~ll 338 (409)
T TIGR00540 274 IDCDDHDSAQEIIFDGLKKLGDDRAISL---PLCLPIPRLK-----------PEDNEKLEKLIEKQA-KNVDDKPKCCIN 338 (409)
T ss_pred HHCCChHHHHHHHHHHHhhCCCcccchh---HHHHHhhhcC-----------CCChHHHHHHHHHHH-HhCCCChhHHHH
Confidence 5579999999999999997665431100 0111111111 134678999999999 9999999 889
Q ss_pred HHHHHHHHHcCCHHHHHHHHH--HHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 013299 321 YRLSLEYAEQRKLNAAHYYAK--MLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQ 381 (446)
Q Consensus 321 ~~lg~~~~~~~~~~~A~~~~~--~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 381 (446)
..+|.++.++|++++|.++|+ ++++.+|++ +.+..+|.++..+|+.++|..++++++..
T Consensus 339 ~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~--~~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 339 RALGQLLMKHGEFIEAADAFKNVAACKEQLDA--NDLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhHHhhcCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999999 688899985 45669999999999999999999999754
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.5e-19 Score=170.24 Aligned_cols=238 Identities=10% Similarity=0.025 Sum_probs=200.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCC-ChHHHHHHHHHHhcCCCCCCChHHHH
Q 013299 157 IEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAG-EDLVALNLLRTLLSGSEDPKCLPALL 235 (446)
Q Consensus 157 ~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~eA~~~~~~al~~~~~P~~~~a~~ 235 (446)
.|+..+++..+-.++...+++++|+..+.++|.++|++..+|+..|.++..+| ++++++..+++++ ..+|++..++.
T Consensus 33 ~~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i--~~npknyqaW~ 110 (320)
T PLN02789 33 TPEFREAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVA--EDNPKNYQIWH 110 (320)
T ss_pred CHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHH--HHCCcchHHhH
Confidence 35556666666667778889999999999999999999999999999999999 6899999999999 89999999998
Q ss_pred HHHHHHhcCCCC--HHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhC
Q 013299 236 IASKICGEYPDL--AEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTN 313 (446)
Q Consensus 236 ~~~~~~~~~~~~--~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~ 313 (446)
..+.++. ..+. .++++.+++++++..|.+ ..+|...|.++... ++++++++++.+++ ++|
T Consensus 111 ~R~~~l~-~l~~~~~~~el~~~~kal~~dpkN-----y~AW~~R~w~l~~l-----------~~~~eeL~~~~~~I-~~d 172 (320)
T PLN02789 111 HRRWLAE-KLGPDAANKELEFTRKILSLDAKN-----YHAWSHRQWVLRTL-----------GGWEDELEYCHQLL-EED 172 (320)
T ss_pred HHHHHHH-HcCchhhHHHHHHHHHHHHhCccc-----HHHHHHHHHHHHHh-----------hhHHHHHHHHHHHH-HHC
Confidence 8776643 3454 368899999999965544 67999999988654 56899999999999 999
Q ss_pred CCCHHHHHHHHHHHHHc---CCH----HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhhc
Q 013299 314 MRDLSILYRLSLEYAEQ---RKL----NAAHYYAKMLLKLEGGSNLKGWLLMARILSA----QKRYEDAETILNAALDQT 382 (446)
Q Consensus 314 P~~~~a~~~lg~~~~~~---~~~----~~A~~~~~~al~l~P~~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~~~ 382 (446)
|+|..+|+++|.++... |.+ ++++.++.+++.++|++. .+|..++.++.. ++++.+|+..+.+++...
T Consensus 173 ~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~-SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~ 251 (320)
T PLN02789 173 VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNE-SPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD 251 (320)
T ss_pred CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCc-CHHHHHHHHHhcCCcccccchhHHHHHHHhhccc
Confidence 99999999999998776 333 578899999999999995 999999999988 566788999999999988
Q ss_pred CCCCcHHHHHHHHHHHHHhC------------------CHHHHHHHHHHHHHH
Q 013299 383 GKWEQGELLRTKAKVQLVQG------------------QLKGAVETYTHLLAA 417 (446)
Q Consensus 383 p~~~~~~~~~~~a~~~~~~g------------------~~~eA~~~~~~~l~l 417 (446)
| .++.++-.++.++.... ..++|...|..+-+.
T Consensus 252 ~--~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~ 302 (320)
T PLN02789 252 S--NHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELEVA 302 (320)
T ss_pred C--CcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHHhh
Confidence 9 78889999999997643 236677777766433
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.6e-17 Score=174.96 Aligned_cols=314 Identities=13% Similarity=0.012 Sum_probs=233.8
Q ss_pred HHhHHHHHHhCChHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHH
Q 013299 67 ELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLM 146 (446)
Q Consensus 67 ~~l~~~~~~~g~~~eA~~~y~~al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~ 146 (446)
...+.+..++|++++|+..|+++++. +|.+...+. .+..+ +...|+.++|+..+
T Consensus 38 y~~aii~~r~Gd~~~Al~~L~qaL~~----~P~~~~av~-dll~l--------------------~~~~G~~~~A~~~~- 91 (822)
T PRK14574 38 YDSLIIRARAGDTAPVLDYLQEESKA----GPLQSGQVD-DWLQI--------------------AGWAGRDQEVIDVY- 91 (822)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhh----CccchhhHH-HHHHH--------------------HHHcCCcHHHHHHH-
Confidence 34457788999999999999999999 665432222 22222 22347888998876
Q ss_pred HHHHHHHhhcCCCCHHHHHHH--HHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcC
Q 013299 147 ILLRKVALKRIEWDPSILDHL--SFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSG 224 (446)
Q Consensus 147 ~~~~~~~l~~~p~~~~~~~~l--g~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~ 224 (446)
+.++ .|.+...+..+ |.++...|++++|++.|+++++.+|++++++..++.++...++.++|+..+++++
T Consensus 92 ----eka~--~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~-- 163 (822)
T PRK14574 92 ----ERYQ--SSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELA-- 163 (822)
T ss_pred ----HHhc--cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhc--
Confidence 3333 46666666666 7799999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhh--hHHHHHhhchhH--------------------
Q 013299 225 SEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQME--STANCLLGISLS-------------------- 282 (446)
Q Consensus 225 ~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~--~~a~~~lg~~~~-------------------- 282 (446)
..+|++... ..++.++.. .++..+|+..++++++..|.+.+... ..+...+|..-.
T Consensus 164 ~~dp~~~~~-l~layL~~~-~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l 241 (822)
T PRK14574 164 ERDPTVQNY-MTLSYLNRA-TDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQL 241 (822)
T ss_pred ccCcchHHH-HHHHHHHHh-cchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHH
Confidence 899997665 445555444 55666799999999996555443211 111111111000
Q ss_pred ------------------hhhhhh-------------------hc---h-------------------------------
Q 013299 283 ------------------AQSKVA-------------------IT---D------------------------------- 291 (446)
Q Consensus 283 ------------------~~~~~~-------------------~~---~------------------------------- 291 (446)
...++. +. .
T Consensus 242 ~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~ 321 (822)
T PRK14574 242 ERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAE 321 (822)
T ss_pred HHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhc
Confidence 000000 00 0
Q ss_pred ---------------HHHHHHHHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC--
Q 013299 292 ---------------FDRATRQAKALQALVSAARSTN------MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEG-- 348 (446)
Q Consensus 292 ---------------~~~~~~~~eAl~~~~~al~~~~------P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P-- 348 (446)
+...++.++|+..|++++ .-+ |.+......|-.+|.+++++++|..++++.....|
T Consensus 322 ~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~-~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~ 400 (822)
T PRK14574 322 GYKMPDYARRWAASAYIDRRLPEKAAPILSSLY-YSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQ 400 (822)
T ss_pred CCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHh-hccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcE
Confidence 012356678899999888 655 33444457788889999999999999999988555
Q ss_pred -------------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 013299 349 -------------GSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLL 415 (446)
Q Consensus 349 -------------~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l 415 (446)
+. .++...++.++...|++.+|++.+++.+...| .|..++..+|.++...|.+.+|...++.++
T Consensus 401 ~~~~~~~~~~pn~d~-~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP--~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~ 477 (822)
T PRK14574 401 VGVYGLPGKEPNDDW-IEGQTLLVQSLVALNDLPTAQKKLEDLSSTAP--ANQNLRIALASIYLARDLPRKAEQELKAVE 477 (822)
T ss_pred EeccCCCCCCCCccH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 22 26777889999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHhh
Q 013299 416 AALQV 420 (446)
Q Consensus 416 ~l~~~ 420 (446)
.+.|.
T Consensus 478 ~l~P~ 482 (822)
T PRK14574 478 SLAPR 482 (822)
T ss_pred hhCCc
Confidence 88754
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.1e-17 Score=162.97 Aligned_cols=252 Identities=12% Similarity=0.040 Sum_probs=172.0
Q ss_pred CCcHHHHHHHHHHHHHHHHhhcCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHH
Q 013299 135 RNNIEEAILLLMILLRKVALKRIEWDPSIL-DHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLV 213 (446)
Q Consensus 135 ~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~-~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~e 213 (446)
+|++++|...+ ..+.+..|++..+. ...+.++...|++++|++.++++++.+|+++.++..++.+|...|++++
T Consensus 131 ~g~~~~A~~~l-----~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 131 RGDEARANQHL-----ERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred CCCHHHHHHHH-----HHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHH
Confidence 45666666654 23344555554332 2447778888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHhcCCCCCCChH--------HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhh
Q 013299 214 ALNLLRTLLSGSEDPKCLP--------ALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQS 285 (446)
Q Consensus 214 A~~~~~~al~~~~~P~~~~--------a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~ 285 (446)
|+..+.+.. +..+.++. ++..+....... .....+.++.+..|... ...+.++..++..+..
T Consensus 206 a~~~l~~l~--k~~~~~~~~~~~l~~~a~~~l~~~~~~~-----~~~~~l~~~w~~lp~~~-~~~~~~~~~~A~~l~~-- 275 (398)
T PRK10747 206 LLDILPSMA--KAHVGDEEHRAMLEQQAWIGLMDQAMAD-----QGSEGLKRWWKNQSRKT-RHQVALQVAMAEHLIE-- 275 (398)
T ss_pred HHHHHHHHH--HcCCCCHHHHHHHHHHHHHHHHHHHHHh-----cCHHHHHHHHHhCCHHH-hCCHHHHHHHHHHHHH--
Confidence 887777777 44433322 221111111111 22333444444332210 1124566666666644
Q ss_pred hhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHc
Q 013299 286 KVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQ 365 (446)
Q Consensus 286 ~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~ 365 (446)
.|+.++|...+++++ + .|.|+......+.+ ..++.+++++.+++.++.+|+++ ..+..+|.++...
T Consensus 276 ---------~g~~~~A~~~L~~~l-~-~~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~-~l~l~lgrl~~~~ 341 (398)
T PRK10747 276 ---------CDDHDTAQQIILDGL-K-RQYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTP-LLWSTLGQLLMKH 341 (398)
T ss_pred ---------CCCHHHHHHHHHHHH-h-cCCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHC
Confidence 356788888888888 7 55566555544444 34888889999999889899884 8888889999999
Q ss_pred cCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 013299 366 KRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAAL 418 (446)
Q Consensus 366 g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~ 418 (446)
|++++|..+|+++++..| ++ ..+..++.++.++|+.++|.++|++++.+.
T Consensus 342 ~~~~~A~~~le~al~~~P--~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 342 GEWQEASLAFRAALKQRP--DA-YDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred CCHHHHHHHHHHHHhcCC--CH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 999999999999998888 44 445678888889999999999999888876
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-17 Score=158.11 Aligned_cols=360 Identities=15% Similarity=0.085 Sum_probs=242.2
Q ss_pred HHHHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHH
Q 013299 10 LEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRA 89 (446)
Q Consensus 10 ~~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~a 89 (446)
.+.-+.++.||...|+-+.|++...++... .. .......++..+..-|+-.++.-.|..+
T Consensus 97 ~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t------------~r--------~p~inlMla~l~~~g~r~~~~vl~ykev 156 (564)
T KOG1174|consen 97 AEQRRRAAECYRQIGNTDMAIETLLQVPPT------------LR--------SPRINLMLARLQHHGSRHKEAVLAYKEV 156 (564)
T ss_pred HHHHHHHHHHHHHHccchHHHHHHhcCCcc------------cc--------chhHHHHHHHHHhccccccHHHHhhhHH
Confidence 455677889999999999998875443321 10 0122233445666777777888888888
Q ss_pred hCCCCCCChHHHHHHHHHHHHHHhh-hcCC---------CCCCccccc----cCccccCCCcHHHHHHHHHHHHHHHHhh
Q 013299 90 LLPCWNLDAETTAKLQKEFAIFLLY-CGGE---------TCPPNLRSQ----MGSSFVPRNNIEEAILLLMILLRKVALK 155 (446)
Q Consensus 90 l~~~~~~~~~~~~~l~~~~a~~ll~-~~~~---------~~~~~~~~~----~~~~~~~~~~~~eA~~~l~~~~~~~~l~ 155 (446)
+.. -|--.+.+ .+.+-+. .+.+ ..+++..+. ...++.-.+....|+.+..- -....
T Consensus 157 vre----cp~aL~~i---~~ll~l~v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~---le~~~ 226 (564)
T KOG1174|consen 157 IRE----CPMALQVI---EALLELGVNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLM---LHDNT 226 (564)
T ss_pred HHh----cchHHHHH---HHHHHHhhcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHH---HHhhc
Confidence 765 22111111 1100000 0000 012221110 00011111112222222110 01123
Q ss_pred cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHH----------------------------------HHHHH
Q 013299 156 RIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKE----------------------------------RYHIL 201 (446)
Q Consensus 156 ~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~----------------------------------~~~~l 201 (446)
.-|+|...+-.+|.++...|++.+|+-.|+++..+||.+.. -|+--
T Consensus 227 ~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~ 306 (564)
T KOG1174|consen 227 TLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVH 306 (564)
T ss_pred cCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhh
Confidence 34555555555566666666666666666666655555554 45556
Q ss_pred HHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchh
Q 013299 202 ALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISL 281 (446)
Q Consensus 202 g~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~ 281 (446)
|..++..+++..|+..-+++| ..+|.+..+++..|.++ ...++.++|+-.|+.|+.+.|.+ -..|--|-.+|
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I--~~~~r~~~alilKG~lL-~~~~R~~~A~IaFR~Aq~Lap~r-----L~~Y~GL~hsY 378 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCI--DSEPRNHEALILKGRLL-IALERHTQAVIAFRTAQMLAPYR-----LEIYRGLFHSY 378 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHh--ccCcccchHHHhccHHH-HhccchHHHHHHHHHHHhcchhh-----HHHHHHHHHHH
Confidence 666777778889999999999 99999999999888774 55899999999999999854433 23333344445
Q ss_pred HhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHH-HHHHH-cCCHHHHHHHHHHHHhhcCCCCHHHHHHHH
Q 013299 282 SAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLS-LEYAE-QRKLNAAHYYAKMLLKLEGGSNLKGWLLMA 359 (446)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg-~~~~~-~~~~~~A~~~~~~al~l~P~~~~~~~~~la 359 (446)
.. .+++.||...-+.++ ..-|+++.++--+| .++.. -.--++|.+.++++++++|+. ..+...+|
T Consensus 379 LA-----------~~~~kEA~~~An~~~-~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y-~~AV~~~A 445 (564)
T KOG1174|consen 379 LA-----------QKRFKEANALANWTI-RLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIY-TPAVNLIA 445 (564)
T ss_pred Hh-----------hchHHHHHHHHHHHH-HHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCcc-HHHHHHHH
Confidence 43 356899999999999 99999999999997 55553 445688999999999999999 69999999
Q ss_pred HHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhh
Q 013299 360 RILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTK 423 (446)
Q Consensus 360 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~ 423 (446)
.++...|++++++..+++.+...| +-..+..+|.++...+.+++|++.|..+|.++|++..
T Consensus 446 EL~~~Eg~~~D~i~LLe~~L~~~~---D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~ 506 (564)
T KOG1174|consen 446 ELCQVEGPTKDIIKLLEKHLIIFP---DVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKR 506 (564)
T ss_pred HHHHhhCccchHHHHHHHHHhhcc---ccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchH
Confidence 999999999999999999999999 4467899999999999999999999999999987543
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.2e-17 Score=165.65 Aligned_cols=264 Identities=19% Similarity=0.093 Sum_probs=208.6
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCC-CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCC
Q 013299 151 KVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPG-IINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPK 229 (446)
Q Consensus 151 ~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~ 229 (446)
+.+++.+|.|+.+.++++.-+..+++.+.|.+..+++++. .-+++.+|..|+.++-..+++.+|+...+-++ ...|+
T Consensus 468 e~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al--~E~~~ 545 (799)
T KOG4162|consen 468 EEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAAL--EEFGD 545 (799)
T ss_pred HHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHH--HHhhh
Confidence 5677889999999999999999999999999999999999 66778999999999999999999999999999 88898
Q ss_pred ChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcc-------------------------hhhhHHHHHhhchhHhh
Q 013299 230 CLPALLIASKICGEYPDLAEEGATFASRALECLGDGCD-------------------------QMESTANCLLGISLSAQ 284 (446)
Q Consensus 230 ~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~-------------------------~~~~~a~~~lg~~~~~~ 284 (446)
|.........+-. ..++.++|+..+...+.....-.. .-........+.+- .+
T Consensus 546 N~~l~~~~~~i~~-~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a-~~ 623 (799)
T KOG4162|consen 546 NHVLMDGKIHIEL-TFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVA-SQ 623 (799)
T ss_pred hhhhchhhhhhhh-hcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHH-hh
Confidence 7554433222222 245666666666655544321000 00000000011110 00
Q ss_pred hhhhh-----------------------------chHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q 013299 285 SKVAI-----------------------------TDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNA 335 (446)
Q Consensus 285 ~~~~~-----------------------------~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~ 335 (446)
..... ..+.+.+..++|.-++.++- .++|-.+.+++..|.++...|..++
T Consensus 624 ~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~-~~~~l~~~~~~~~G~~~~~~~~~~E 702 (799)
T KOG4162|consen 624 LKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS-KIDPLSASVYYLRGLLLEVKGQLEE 702 (799)
T ss_pred hhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH-hcchhhHHHHHHhhHHHHHHHhhHH
Confidence 00000 00123456688999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHH--HHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 013299 336 AHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAET--ILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTH 413 (446)
Q Consensus 336 A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~--~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~ 413 (446)
|.+.|..|+.+||++ +.+...+|.++...|+-.-|.. .+..+++.+| .+.++|+.+|.++..+|+.++|.++|..
T Consensus 703 A~~af~~Al~ldP~h-v~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp--~n~eaW~~LG~v~k~~Gd~~~Aaecf~a 779 (799)
T KOG4162|consen 703 AKEAFLVALALDPDH-VPSMTALAELLLELGSPRLAEKRSLLSDALRLDP--LNHEAWYYLGEVFKKLGDSKQAAECFQA 779 (799)
T ss_pred HHHHHHHHHhcCCCC-cHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHccchHHHHHHHHH
Confidence 999999999999999 5999999999999999888888 9999999999 9999999999999999999999999999
Q ss_pred HHHHHhhhh
Q 013299 414 LLAALQVQT 422 (446)
Q Consensus 414 ~l~l~~~~~ 422 (446)
++++.+..+
T Consensus 780 a~qLe~S~P 788 (799)
T KOG4162|consen 780 ALQLEESNP 788 (799)
T ss_pred HHhhccCCC
Confidence 999986543
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.7e-17 Score=165.34 Aligned_cols=353 Identities=15% Similarity=0.133 Sum_probs=250.9
Q ss_pred HHHHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHH
Q 013299 10 LEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRA 89 (446)
Q Consensus 10 ~~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~a 89 (446)
+..+.-.|..++.-|++++|++.|..+|+. +|.+. .++..||.+|.++|+.+.+...+-.|
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkq--------dp~~~-----------~ay~tL~~IyEqrGd~eK~l~~~llA 199 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQ--------DPRNP-----------IAYYTLGEIYEQRGDIEKALNFWLLA 199 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------Cccch-----------hhHHHHHHHHHHcccHHHHHHHHHHH
Confidence 345566777888889999999999999997 45442 47889999999999999999998888
Q ss_pred hCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHH
Q 013299 90 LLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSF 169 (446)
Q Consensus 90 l~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~ 169 (446)
--+ +|.+. .+...++.. ...+|++.+|+-++ ..+++.+|.+-........
T Consensus 200 AHL----~p~d~-e~W~~ladl--------------------s~~~~~i~qA~~cy-----~rAI~~~p~n~~~~~ers~ 249 (895)
T KOG2076|consen 200 AHL----NPKDY-ELWKRLADL--------------------SEQLGNINQARYCY-----SRAIQANPSNWELIYERSS 249 (895)
T ss_pred Hhc----CCCCh-HHHHHHHHH--------------------HHhcccHHHHHHHH-----HHHHhcCCcchHHHHHHHH
Confidence 777 44443 234555543 23578899998875 6778999999999999999
Q ss_pred HHHhcCCHHHHHHHHHhhCCCCCCcH-----HHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCC--CChHHHHHHHHHHh
Q 013299 170 AFSIAGDLSSLATQIEELLPGIINRK-----ERYHILALCYYGAGEDLVALNLLRTLLSGSEDP--KCLPALLIASKICG 242 (446)
Q Consensus 170 ~l~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P--~~~~a~~~~~~~~~ 242 (446)
.+.+.|+...|...|.+++..+|... +.-...+..+...++-+.|++.++.++ ...- ...+-+..++.+++
T Consensus 250 L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~--s~~~~~~~~ed~ni~ael~l 327 (895)
T KOG2076|consen 250 LYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL--SKEKDEASLEDLNILAELFL 327 (895)
T ss_pred HHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--hhccccccccHHHHHHHHHH
Confidence 99999999999999999999999221 122234666777787799999999999 4111 11112222334433
Q ss_pred cCCCCHHHHHHHHHHHHH----------------------HcC-CCcchhhhH-HHHHhhchhHhhhhhhh---------
Q 013299 243 EYPDLAEEGATFASRALE----------------------CLG-DGCDQMEST-ANCLLGISLSAQSKVAI--------- 289 (446)
Q Consensus 243 ~~~~~~~eA~~~~~~al~----------------------~~~-~~~~~~~~~-a~~~lg~~~~~~~~~~~--------- 289 (446)
. ...++.|.......-. ..+ ++...+.-. .+..+|.+..+......
T Consensus 328 ~-~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~ 406 (895)
T KOG2076|consen 328 K-NKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVED 406 (895)
T ss_pred H-hHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHh
Confidence 3 3456666555544333 000 000011111 13333333222221100
Q ss_pred ----c-----------hHHHHHHHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHH
Q 013299 290 ----T-----------DFDRATRQAKALQALVSAARSTNMR-DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLK 353 (446)
Q Consensus 290 ----~-----------~~~~~~~~~eAl~~~~~al~~~~P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~ 353 (446)
. -+..-|++.+|+..|..++ ...+. +..+|+.+|.+|..+|.+++|++.|.+++.++|++ ..
T Consensus 407 n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~-~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~-~D 484 (895)
T KOG2076|consen 407 NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPIT-NREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDN-LD 484 (895)
T ss_pred cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHh-cCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCc-hh
Confidence 0 0134578999999999999 66654 46799999999999999999999999999999999 59
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhcCC-------CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 013299 354 GWLLMARILSAQKRYEDAETILNAALDQTGK-------WEQGELLRTKAKVQLVQGQLKGAVETYTHLLA 416 (446)
Q Consensus 354 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-------~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~ 416 (446)
+...|+.++..+|+.++|+..+++...-+|+ +....+.++++.++...|+.++=+..-..++.
T Consensus 485 ~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 485 ARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVD 554 (895)
T ss_pred hhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 9999999999999999999999986622210 12456778999999999999995555554444
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.8e-17 Score=153.31 Aligned_cols=305 Identities=13% Similarity=0.105 Sum_probs=246.1
Q ss_pred HHhHHHHHHhCChHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHH
Q 013299 67 ELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLM 146 (446)
Q Consensus 67 ~~l~~~~~~~g~~~eA~~~y~~al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~ 146 (446)
..+|.-++..|++.+|+..|..+++. ||.+..++.++-..+ ...|+-.-|+.-+
T Consensus 42 lElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~y---------------------LAmGksk~al~Dl- 95 (504)
T KOG0624|consen 42 LELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVY---------------------LAMGKSKAALQDL- 95 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHH---------------------hhhcCCccchhhH-
Confidence 34678888999999999999999999 998877654443332 2233333455544
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCc---HHHHHHHH------------HHHHHCCCh
Q 013299 147 ILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINR---KERYHILA------------LCYYGAGED 211 (446)
Q Consensus 147 ~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg------------~~~~~~g~~ 211 (446)
..+++.-|+...+....|.++.++|++++|++.|+.+++.+|.+ .+++..|+ ..++..|+.
T Consensus 96 ----~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~ 171 (504)
T KOG0624|consen 96 ----SRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDC 171 (504)
T ss_pred ----HHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCch
Confidence 56788889999999999999999999999999999999999954 34444443 345567999
Q ss_pred HHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhch
Q 013299 212 LVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITD 291 (446)
Q Consensus 212 ~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~ 291 (446)
..|+....+.| .+.|=+.+.+.+.+. |+...|....||.-++.+-++..++ ..+++-+...+...
T Consensus 172 ~~ai~~i~~ll--Ei~~Wda~l~~~Rak-c~i~~~e~k~AI~Dlk~askLs~Dn-----Te~~ykis~L~Y~v------- 236 (504)
T KOG0624|consen 172 QNAIEMITHLL--EIQPWDASLRQARAK-CYIAEGEPKKAIHDLKQASKLSQDN-----TEGHYKISQLLYTV------- 236 (504)
T ss_pred hhHHHHHHHHH--hcCcchhHHHHHHHH-HHHhcCcHHHHHHHHHHHHhccccc-----hHHHHHHHHHHHhh-------
Confidence 99999999999 899999888776665 5666799999999999888854333 56777777777654
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCHHHHHH------------HHHHHHHcCCHHHHHHHHHHHHhhcCCCCHH----HH
Q 013299 292 FDRATRQAKALQALVSAARSTNMRDLSILYR------------LSLEYAEQRKLNAAHYYAKMLLKLEGGSNLK----GW 355 (446)
Q Consensus 292 ~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~------------lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~----~~ 355 (446)
|+.+.++...++++ ++||++-..+-. -+....+.+++-+++...++.++-+|.-+ . .+
T Consensus 237 ----gd~~~sL~~iRECL-KldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~-~ir~~~~ 310 (504)
T KOG0624|consen 237 ----GDAENSLKEIRECL-KLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEET-MIRYNGF 310 (504)
T ss_pred ----hhHHHHHHHHHHHH-ccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCccc-ceeeeee
Confidence 56899999999999 999998765421 12334567899999999999999999852 3 34
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhh
Q 013299 356 LLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKT 424 (446)
Q Consensus 356 ~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~ 424 (446)
..+-.++..-|++.+|+..+.++|..+| ++..++--+|.+++....||+|+..|+++++.++.+..+
T Consensus 311 r~~c~C~~~d~~~~eAiqqC~evL~~d~--~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 311 RVLCTCYREDEQFGEAIQQCKEVLDIDP--DDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRA 377 (504)
T ss_pred heeeecccccCCHHHHHHHHHHHHhcCc--hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHH
Confidence 4567788888999999999999999999 899999999999999999999999999999998875543
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.1e-18 Score=148.37 Aligned_cols=203 Identities=18% Similarity=0.044 Sum_probs=147.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHH
Q 013299 162 SILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKIC 241 (446)
Q Consensus 162 ~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~ 241 (446)
.++..||..|...|++..|...+++||+.||++..+|..++.+|...|..+-|.+.|++|+ .++|++..++.+.|..+
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl--sl~p~~GdVLNNYG~FL 113 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKAL--SLAPNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHH--hcCCCccchhhhhhHHH
Confidence 4667899999999999999999999999999999999999999999999999999999999 99999999998888877
Q ss_pred hcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHH
Q 013299 242 GEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILY 321 (446)
Q Consensus 242 ~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~ 321 (446)
+.+ |++++|..+|++|+. .|.-. ..+..+-++|.|-.+. |+.+.|.+.|++++ +++|+++.+..
T Consensus 114 C~q-g~~~eA~q~F~~Al~-~P~Y~--~~s~t~eN~G~Cal~~-----------gq~~~A~~~l~raL-~~dp~~~~~~l 177 (250)
T COG3063 114 CAQ-GRPEEAMQQFERALA-DPAYG--EPSDTLENLGLCALKA-----------GQFDQAEEYLKRAL-ELDPQFPPALL 177 (250)
T ss_pred HhC-CChHHHHHHHHHHHh-CCCCC--CcchhhhhhHHHHhhc-----------CCchhHHHHHHHHH-HhCcCCChHHH
Confidence 764 589999999998888 43321 1244555666655433 34555666666666 66666666666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013299 322 RLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTG 383 (446)
Q Consensus 322 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 383 (446)
.++..+++.|++-.|..++++-..--+-. ++.+.....|-...|+-+.|-.+=.+..+.+|
T Consensus 178 ~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~-A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP 238 (250)
T COG3063 178 ELARLHYKAGDYAPARLYLERYQQRGGAQ-AESLLLGIRIAKRLGDRAAAQRYQAQLQRLFP 238 (250)
T ss_pred HHHHHHHhcccchHHHHHHHHHHhccccc-HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 66666666666666666665555444433 35555455555555665555555555555555
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.6e-16 Score=159.29 Aligned_cols=242 Identities=14% Similarity=0.039 Sum_probs=131.1
Q ss_pred CHHHHHHH-HHHHHhcCCHHHHHHHHHhhCCCCCCcHHHH-HHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHH
Q 013299 160 DPSILDHL-SFAFSIAGDLSSLATQIEELLPGIINRKERY-HILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIA 237 (446)
Q Consensus 160 ~~~~~~~l-g~~l~~~~~~~~A~~~~~~al~~~p~~~~~~-~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~ 237 (446)
+|..++.+ +.+..+.|+++.|.+.|+++.+.+|++..+. ...+.++...|++++|+..+++++ +.+|+++.++..+
T Consensus 116 ~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~--~~~P~~~~al~ll 193 (398)
T PRK10747 116 QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLL--EVAPRHPEVLRLA 193 (398)
T ss_pred chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHH--hcCCCCHHHHHHH
Confidence 34444444 3333666666666666666666666654332 233666666666666666666666 6666666666655
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhh---hHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCC
Q 013299 238 SKICGEYPDLAEEGATFASRALECLGDGCDQME---STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNM 314 (446)
Q Consensus 238 ~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~---~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P 314 (446)
+.++.. .|++++|+..+.+..+...-+++... ..++..+..... .....+...+..+... +..|
T Consensus 194 ~~~~~~-~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~-----------~~~~~~~l~~~w~~lp-~~~~ 260 (398)
T PRK10747 194 EQAYIR-TGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAM-----------ADQGSEGLKRWWKNQS-RKTR 260 (398)
T ss_pred HHHHHH-HHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH-----------HhcCHHHHHHHHHhCC-HHHh
Confidence 554433 46666666666666553222111110 112221111000 0011223333344444 4445
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHH
Q 013299 315 RDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTK 394 (446)
Q Consensus 315 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~ 394 (446)
+++.++..+|..+...|+.++|...++++++. |.++ .....++.+ ..++++++++.+++.++..| +++..++.+
T Consensus 261 ~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~-~l~~l~~~l--~~~~~~~al~~~e~~lk~~P--~~~~l~l~l 334 (398)
T PRK10747 261 HQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDE-RLVLLIPRL--KTNNPEQLEKVLRQQIKQHG--DTPLLWSTL 334 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCH-HHHHHHhhc--cCCChHHHHHHHHHHHhhCC--CCHHHHHHH
Confidence 56666666666666666666666666666663 3332 444434433 23666666666666666666 666666666
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHHhhhh
Q 013299 395 AKVQLVQGQLKGAVETYTHLLAALQVQT 422 (446)
Q Consensus 395 a~~~~~~g~~~eA~~~~~~~l~l~~~~~ 422 (446)
|.++...|++++|.+.|++++++.|+..
T Consensus 335 grl~~~~~~~~~A~~~le~al~~~P~~~ 362 (398)
T PRK10747 335 GQLLMKHGEWQEASLAFRAALKQRPDAY 362 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCHH
Confidence 6666666666666666666666666543
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.9e-18 Score=158.70 Aligned_cols=214 Identities=17% Similarity=0.098 Sum_probs=175.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHH
Q 013299 161 PSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKI 240 (446)
Q Consensus 161 ~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~ 240 (446)
++.+..|..+|.+.++++.|+..|.+.++.-|.+.......+.++..++++++|++.|+.++ +.+|.|+++....+.-
T Consensus 256 ~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vl--k~~~~nvEaiAcia~~ 333 (478)
T KOG1129|consen 256 PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVL--KLHPINVEAIACIAVG 333 (478)
T ss_pred hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHH--hcCCccceeeeeeeec
Confidence 34455677788888999999999999999999999999999999999999999999999999 8999999876544433
Q ss_pred HhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCC---CH
Q 013299 241 CGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMR---DL 317 (446)
Q Consensus 241 ~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~---~~ 317 (446)
++ -.++.+-|+.+|+|.++.--.+ +..+.++|.|... .++++-++.+|++|+ ....+ -+
T Consensus 334 yf-Y~~~PE~AlryYRRiLqmG~~s-----peLf~NigLCC~y-----------aqQ~D~~L~sf~RAl-stat~~~~aa 395 (478)
T KOG1129|consen 334 YF-YDNNPEMALRYYRRILQMGAQS-----PELFCNIGLCCLY-----------AQQIDLVLPSFQRAL-STATQPGQAA 395 (478)
T ss_pred cc-cCCChHHHHHHHHHHHHhcCCC-----hHHHhhHHHHHHh-----------hcchhhhHHHHHHHH-hhccCcchhh
Confidence 33 3578889999999998842222 5678888887644 246788888998888 76542 35
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHH
Q 013299 318 SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKV 397 (446)
Q Consensus 318 ~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~ 397 (446)
++|||+|.+....||+.-|..+|+-|+.-||++ .+++++||.+-+..|+.++|..++..|-...| +-.+..++++.+
T Consensus 396 DvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h-~ealnNLavL~~r~G~i~~Arsll~~A~s~~P--~m~E~~~Nl~~~ 472 (478)
T KOG1129|consen 396 DVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQH-GEALNNLAVLAARSGDILGARSLLNAAKSVMP--DMAEVTTNLQFM 472 (478)
T ss_pred hhhhccceeEEeccchHHHHHHHHHHhccCcch-HHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc--cccccccceeEE
Confidence 789999999888999999999999999999998 59999999999999999999999999988888 777777776544
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.5e-17 Score=160.33 Aligned_cols=227 Identities=12% Similarity=-0.004 Sum_probs=168.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCCh--HHH
Q 013299 138 IEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAG-DLSSLATQIEELLPGIINRKERYHILALCYYGAGED--LVA 214 (446)
Q Consensus 138 ~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~--~eA 214 (446)
.++|+.++ ..++..+|.+..+|+..|.++...| ++++++..+++++..+|++..+|++.+.++...|+. +++
T Consensus 53 serAL~lt-----~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~e 127 (320)
T PLN02789 53 SPRALDLT-----ADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKE 127 (320)
T ss_pred CHHHHHHH-----HHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHH
Confidence 44565543 4566777888888888888888777 567888888888888888888888888887777764 567
Q ss_pred HHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHH
Q 013299 215 LNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDR 294 (446)
Q Consensus 215 ~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~ 294 (446)
+..+++++ ..+|+|..++...+.++ ...|++++++.+++++|+..+.+ ..+|+.+|.++...+.... .
T Consensus 128 l~~~~kal--~~dpkNy~AW~~R~w~l-~~l~~~~eeL~~~~~~I~~d~~N-----~sAW~~R~~vl~~~~~l~~----~ 195 (320)
T PLN02789 128 LEFTRKIL--SLDAKNYHAWSHRQWVL-RTLGGWEDELEYCHQLLEEDVRN-----NSAWNQRYFVITRSPLLGG----L 195 (320)
T ss_pred HHHHHHHH--HhCcccHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHCCCc-----hhHHHHHHHHHHhcccccc----c
Confidence 77788888 78888888887776554 44677888888888888854433 4577777776654321000 0
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcc----
Q 013299 295 ATRQAKALQALVSAARSTNMRDLSILYRLSLEYAE----QRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQK---- 366 (446)
Q Consensus 295 ~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~----~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g---- 366 (446)
....++++.+..+++ .++|+|..+|++++.++.. .++..+|+..+.+++..+|.+ ..++..|+.++....
T Consensus 196 ~~~~e~el~y~~~aI-~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s-~~al~~l~d~~~~~~~~~~ 273 (320)
T PLN02789 196 EAMRDSELKYTIDAI-LANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNH-VFALSDLLDLLCEGLQPTA 273 (320)
T ss_pred cccHHHHHHHHHHHH-HhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCc-HHHHHHHHHHHHhhhccch
Confidence 012467888999999 9999999999999999987 456678999999999999998 599999999997632
Q ss_pred --------------CHHHHHHHHHHHHhhcC
Q 013299 367 --------------RYEDAETILNAALDQTG 383 (446)
Q Consensus 367 --------------~~~eA~~~~~~al~~~p 383 (446)
..++|...|+..-+.+|
T Consensus 274 ~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~ 304 (320)
T PLN02789 274 EFRDTVDTLAEELSDSTLAQAVCSELEVADP 304 (320)
T ss_pred hhhhhhhccccccccHHHHHHHHHHHHhhCc
Confidence 34668888877755566
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.1e-17 Score=160.08 Aligned_cols=314 Identities=12% Similarity=0.023 Sum_probs=223.3
Q ss_pred HHHHHHhCChHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHH
Q 013299 70 PELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILL 149 (446)
Q Consensus 70 ~~~~~~~g~~~eA~~~y~~al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~ 149 (446)
|+..++.|+++.|+.+|..+|.+ +|.|..-. .+ .-..|...+++++|+.--
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l----~p~nhvly-Sn--------------------rsaa~a~~~~~~~al~da---- 59 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIML----SPTNHVLY-SN--------------------RSAAYASLGSYEKALKDA---- 59 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHcc----CCCccchh-cc--------------------hHHHHHHHhhHHHHHHHH----
Confidence 46778999999999999999999 66552211 11 112345577888887653
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCC-------------------
Q 013299 150 RKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGE------------------- 210 (446)
Q Consensus 150 ~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~------------------- 210 (446)
......+|+=+.+|..+|.++...|+|++|+..|.+.|+.+|+|......|+.++...-.
T Consensus 60 -~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~ 138 (539)
T KOG0548|consen 60 -TKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPL 138 (539)
T ss_pred -HHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChh
Confidence 445678899999999999999999999999999999999999999999998887722200
Q ss_pred -----hHHHHHHHHHHh---------------------------------------cCCCCCC------------ChH--
Q 013299 211 -----DLVALNLLRTLL---------------------------------------SGSEDPK------------CLP-- 232 (446)
Q Consensus 211 -----~~eA~~~~~~al---------------------------------------~~~~~P~------------~~~-- 232 (446)
.+.+.....+.+ ....+|. ...
T Consensus 139 t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~ 218 (539)
T KOG0548|consen 139 TNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEER 218 (539)
T ss_pred hhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHH
Confidence 011111111111 0011120 000
Q ss_pred -------HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhc---------------
Q 013299 233 -------ALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAIT--------------- 290 (446)
Q Consensus 233 -------a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~--------------- 290 (446)
..-.+|...+. ..+++.|+.+|.+++++. .+. .-+.+.+.+|...+.+...
T Consensus 219 ~~k~~a~~ek~lgnaayk-kk~f~~a~q~y~~a~el~-~~i-----t~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~r 291 (539)
T KOG0548|consen 219 RVKEKAHKEKELGNAAYK-KKDFETAIQHYAKALELA-TDI-----TYLNNIAAVYLERGKYAECIELCEKAVEVGRELR 291 (539)
T ss_pred HHHHhhhHHHHHHHHHHH-hhhHHHHHHHHHHHHhHh-hhh-----HHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHH
Confidence 12235555555 468889999999999965 432 2334444444444332211
Q ss_pred ---------------hHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHH
Q 013299 291 ---------------DFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGW 355 (446)
Q Consensus 291 ---------------~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 355 (446)
-+.+.+.++.|+.+|++++ .-.-+ ..++......++++........++|+- +.--
T Consensus 292 ad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaL-te~Rt--------~~~ls~lk~~Ek~~k~~e~~a~~~pe~-A~e~ 361 (539)
T KOG0548|consen 292 ADYKLIAKALARLGNAYTKREDYEGAIKYYQKAL-TEHRT--------PDLLSKLKEAEKALKEAERKAYINPEK-AEEE 361 (539)
T ss_pred HHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHh-hhhcC--------HHHHHHHHHHHHHHHHHHHHHhhChhH-HHHH
Confidence 0123466777777777777 54433 445555566777777777777778876 4666
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhccCCcchhhHH
Q 013299 356 LLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKVY 435 (446)
Q Consensus 356 ~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~~~~~~~~~~~~ 435 (446)
...|.-++..|+|.+|+..|.+||..+| +++.+|-++|.++.++|.+.+|+..++.++++ +|.|...|
T Consensus 362 r~kGne~Fk~gdy~~Av~~YteAIkr~P--~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL----------~p~~~kgy 429 (539)
T KOG0548|consen 362 REKGNEAFKKGDYPEAVKHYTEAIKRDP--EDARLYSNRAACYLKLGEYPEALKDAKKCIEL----------DPNFIKAY 429 (539)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcCC--chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc----------CchHHHHH
Confidence 6779999999999999999999999999 99999999999999999999999999999999 58999999
Q ss_pred hhhhccc
Q 013299 436 FMRKRVS 442 (446)
Q Consensus 436 ~~~~~~~ 442 (446)
+.++.++
T Consensus 430 ~RKg~al 436 (539)
T KOG0548|consen 430 LRKGAAL 436 (539)
T ss_pred HHHHHHH
Confidence 9887654
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.8e-16 Score=148.62 Aligned_cols=307 Identities=12% Similarity=0.025 Sum_probs=234.7
Q ss_pred HHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHhCCCC
Q 013299 15 LKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRALLPCW 94 (446)
Q Consensus 15 ~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~al~~~~ 94 (446)
.++.+..-.|+.-.|..++-.+-.. +. .|.+ ..-+..+|.++...|++++|+..|.++..+
T Consensus 201 ika~Aq~~~~~hs~a~~t~l~le~~--~~----lr~N-----------vhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~-- 261 (564)
T KOG1174|consen 201 IKALAQMFNFKHSDASQTFLMLHDN--TT----LRCN-----------EHLMMALGKCLYYNGDYFQAEDIFSSTLCA-- 261 (564)
T ss_pred HHHHHHHHhcccchhhhHHHHHHhh--cc----CCcc-----------HHHHHHHhhhhhhhcCchHHHHHHHHHhhC--
Confidence 4556666666666665554332111 11 2322 234556778999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhc
Q 013299 95 NLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIA 174 (446)
Q Consensus 95 ~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~ 174 (446)
||.+... .-..|-++- ..|+++.--.+ ....+.......+-|+--|..+...
T Consensus 262 --dpy~i~~-MD~Ya~LL~--------------------~eg~~e~~~~L-----~~~Lf~~~~~ta~~wfV~~~~l~~~ 313 (564)
T KOG1174|consen 262 --NPDNVEA-MDLYAVLLG--------------------QEGGCEQDSAL-----MDYLFAKVKYTASHWFVHAQLLYDE 313 (564)
T ss_pred --Chhhhhh-HHHHHHHHH--------------------hccCHhhHHHH-----HHHHHhhhhcchhhhhhhhhhhhhh
Confidence 7765332 112222211 13334332221 1223344444556677778888899
Q ss_pred CCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHH
Q 013299 175 GDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATF 254 (446)
Q Consensus 175 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~ 254 (446)
+++..|+..-+++|+.+|.+.+++...|.++...||.++|+-.|+.|+ .+.|-....|-.+-- +|.-.|++.||...
T Consensus 314 K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq--~Lap~rL~~Y~GL~h-sYLA~~~~kEA~~~ 390 (564)
T KOG1174|consen 314 KKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQ--MLAPYRLEIYRGLFH-SYLAQKRFKEANAL 390 (564)
T ss_pred hhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHH--hcchhhHHHHHHHHH-HHHhhchHHHHHHH
Confidence 999999999999999999999999999999999999999999999999 999999887765443 44457899999999
Q ss_pred HHHHHHHcCCCcchhhhHHHHHhh-chhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 013299 255 ASRALECLGDGCDQMESTANCLLG-ISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKL 333 (446)
Q Consensus 255 ~~~al~~~~~~~~~~~~~a~~~lg-~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~ 333 (446)
.+.++...+.+ +.++-.+| .+..... .-.++|.+.+++++ .++|....+...++.++...|++
T Consensus 391 An~~~~~~~~s-----A~~LtL~g~~V~~~dp----------~~rEKAKkf~ek~L-~~~P~Y~~AV~~~AEL~~~Eg~~ 454 (564)
T KOG1174|consen 391 ANWTIRLFQNS-----ARSLTLFGTLVLFPDP----------RMREKAKKFAEKSL-KINPIYTPAVNLIAELCQVEGPT 454 (564)
T ss_pred HHHHHHHhhcc-----hhhhhhhcceeeccCc----------hhHHHHHHHHHhhh-ccCCccHHHHHHHHHHHHhhCcc
Confidence 99999977665 56777777 3333221 23589999999999 99999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHH
Q 013299 334 NAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELL 391 (446)
Q Consensus 334 ~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 391 (446)
++++..+++.+...||. ..+..||.++...+.+++|+.+|..|++++| .+-...
T Consensus 455 ~D~i~LLe~~L~~~~D~--~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP--~~~~sl 508 (564)
T KOG1174|consen 455 KDIIKLLEKHLIIFPDV--NLHNHLGDIMRAQNEPQKAMEYYYKALRQDP--KSKRTL 508 (564)
T ss_pred chHHHHHHHHHhhcccc--HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCc--cchHHH
Confidence 99999999999999995 7999999999999999999999999999999 554433
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.4e-17 Score=151.38 Aligned_cols=193 Identities=15% Similarity=0.057 Sum_probs=165.8
Q ss_pred cccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCC
Q 013299 131 SFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGE 210 (446)
Q Consensus 131 ~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 210 (446)
.+...|++++|+..+ +.++...|+++.++..+|.++...|++++|++.|++++..+|+++.+++++|.++...|+
T Consensus 40 ~~~~~~~~~~A~~~~-----~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~ 114 (234)
T TIGR02521 40 GYLEQGDLEVAKENL-----DKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGK 114 (234)
T ss_pred HHHHCCCHHHHHHHH-----HHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccc
Confidence 455678899999886 455677899999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCCCCC--CChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhh
Q 013299 211 DLVALNLLRTLLSGSEDP--KCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVA 288 (446)
Q Consensus 211 ~~eA~~~~~~al~~~~~P--~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~ 288 (446)
+++|+..|++++ ...+ ... ..+..+|.++..
T Consensus 115 ~~~A~~~~~~~~--~~~~~~~~~----------------------------------------~~~~~l~~~~~~----- 147 (234)
T TIGR02521 115 YEQAMQQFEQAI--EDPLYPQPA----------------------------------------RSLENAGLCALK----- 147 (234)
T ss_pred HHHHHHHHHHHH--hccccccch----------------------------------------HHHHHHHHHHHH-----
Confidence 999999999999 5321 111 123344555533
Q ss_pred hchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCH
Q 013299 289 ITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRY 368 (446)
Q Consensus 289 ~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~ 368 (446)
.|++++|+..|++++ ..+|+++.++..+|.++...|++++|+..+++++.+.|+++ ..+..++.++...|+.
T Consensus 148 ------~g~~~~A~~~~~~~~-~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 219 (234)
T TIGR02521 148 ------AGDFDKAEKYLTRAL-QIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTA-ESLWLGIRIARALGDV 219 (234)
T ss_pred ------cCCHHHHHHHHHHHH-HhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHhhH
Confidence 356789999999999 99999999999999999999999999999999999988884 8888999999999999
Q ss_pred HHHHHHHHHHHhhcC
Q 013299 369 EDAETILNAALDQTG 383 (446)
Q Consensus 369 ~eA~~~~~~al~~~p 383 (446)
++|..+.+.+....|
T Consensus 220 ~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 220 AAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHHHHHHHHHhhCc
Confidence 999999888776654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.1e-18 Score=155.44 Aligned_cols=237 Identities=14% Similarity=0.122 Sum_probs=211.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcC
Q 013299 165 DHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEY 244 (446)
Q Consensus 165 ~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~ 244 (446)
..+|.+|.+.|.+.+|...++.+++..| .++.+..|+.+|.+..+.+.|+..|.+.+ ...|.++..+...+.+. +.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gl--d~fP~~VT~l~g~ARi~-ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGL--DSFPFDVTYLLGQARIH-EA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhh--hcCCchhhhhhhhHHHH-HH
Confidence 5899999999999999999999999765 78999999999999999999999999999 89999998888788774 55
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 013299 245 PDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLS 324 (446)
Q Consensus 245 ~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg 324 (446)
+++.++|+++|+++++..+.+ ..+...+|..|+. .++.+-|+.+|++.+ +..-.+|+.+.|+|
T Consensus 303 m~~~~~a~~lYk~vlk~~~~n-----vEaiAcia~~yfY-----------~~~PE~AlryYRRiL-qmG~~speLf~Nig 365 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPIN-----VEAIACIAVGYFY-----------DNNPEMALRYYRRIL-QMGAQSPELFCNIG 365 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCcc-----ceeeeeeeecccc-----------CCChHHHHHHHHHHH-HhcCCChHHHhhHH
Confidence 789999999999999965544 3344455555543 246899999999999 99999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhC
Q 013299 325 LEYAEQRKLNAAHYYAKMLLKLE--GGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQG 402 (446)
Q Consensus 325 ~~~~~~~~~~~A~~~~~~al~l~--P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g 402 (446)
.++.-.+++|-++..|++|+..- |+..+++|+++|.+....|++.-|-.+|+-++.-+| ++.+++.++|.+..+.|
T Consensus 366 LCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~--~h~ealnNLavL~~r~G 443 (478)
T KOG1129|consen 366 LCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA--QHGEALNNLAVLAARSG 443 (478)
T ss_pred HHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc--chHHHHHhHHHHHhhcC
Confidence 99999999999999999998864 555568999999999999999999999999999999 99999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhhhhhh
Q 013299 403 QLKGAVETYTHLLAALQVQTKT 424 (446)
Q Consensus 403 ~~~eA~~~~~~~l~l~~~~~~~ 424 (446)
++++|...+..+-+..|+-+++
T Consensus 444 ~i~~Arsll~~A~s~~P~m~E~ 465 (478)
T KOG1129|consen 444 DILGARSLLNAAKSVMPDMAEV 465 (478)
T ss_pred chHHHHHHHHHhhhhCcccccc
Confidence 9999999999999998765543
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.9e-17 Score=153.83 Aligned_cols=267 Identities=15% Similarity=0.099 Sum_probs=222.9
Q ss_pred CccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHC
Q 013299 129 GSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGA 208 (446)
Q Consensus 129 ~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 208 (446)
++.|..+.+|.+|+..+ ..++...|+++..|.+.+..+...|++++|.-..++.+.++|+.+..+...+.++...
T Consensus 56 gn~~yk~k~Y~nal~~y-----t~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~ 130 (486)
T KOG0550|consen 56 GNAFYKQKTYGNALKNY-----TFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLAL 130 (486)
T ss_pred cchHHHHhhHHHHHHHH-----HHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhh
Confidence 45677778889998875 5567889999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHH--------hc--CCCC------CCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhH
Q 013299 209 GEDLVALNLLRTL--------LS--GSED------PKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMEST 272 (446)
Q Consensus 209 g~~~eA~~~~~~a--------l~--~~~~------P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~ 272 (446)
+...+|...|+.. +. ..+- |....+.+ +..-|+...+++++|....-.+++..+.+ ..
T Consensus 131 ~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~-lka~cl~~~~~~~~a~~ea~~ilkld~~n-----~~ 204 (486)
T KOG0550|consen 131 SDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKL-LKAECLAFLGDYDEAQSEAIDILKLDATN-----AE 204 (486)
T ss_pred HHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHH-hhhhhhhhcccchhHHHHHHHHHhcccch-----hH
Confidence 9888887655421 00 0112 22222333 44456777899999999998888854333 67
Q ss_pred HHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHH------------HHHHHHHHHHHcCCHHHHHHHH
Q 013299 273 ANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLS------------ILYRLSLEYAEQRKLNAAHYYA 340 (446)
Q Consensus 273 a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~------------a~~~lg~~~~~~~~~~~A~~~~ 340 (446)
+.+..|.|+... ...+.|+..|++++ .++|++.. .+-.-|.-.++.|++..|.+.|
T Consensus 205 al~vrg~~~yy~-----------~~~~ka~~hf~qal-~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Y 272 (486)
T KOG0550|consen 205 ALYVRGLCLYYN-----------DNADKAINHFQQAL-RLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECY 272 (486)
T ss_pred HHHhcccccccc-----------cchHHHHHHHhhhh-ccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHH
Confidence 888999988654 46899999999999 99999764 3456688889999999999999
Q ss_pred HHHHhhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 013299 341 KMLLKLEGGSN---LKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAA 417 (446)
Q Consensus 341 ~~al~l~P~~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l 417 (446)
..||.++|++- +..|+++|.+...+||..+|+..++.|++++| ....++..+|.++...+++++|++.|++++++
T Consensus 273 teal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~--syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 273 TEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDS--SYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999862 35788999999999999999999999999999 89999999999999999999999999999988
Q ss_pred Hhh
Q 013299 418 LQV 420 (446)
Q Consensus 418 ~~~ 420 (446)
.+.
T Consensus 351 ~~s 353 (486)
T KOG0550|consen 351 EKD 353 (486)
T ss_pred ccc
Confidence 654
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-15 Score=153.68 Aligned_cols=253 Identities=18% Similarity=0.137 Sum_probs=178.9
Q ss_pred HHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHhC
Q 013299 12 AIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRALL 91 (446)
Q Consensus 12 ~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~al~ 91 (446)
...+.|..|..+|+||+|+..|+.+|+...+..-...| .+...+..+|.+|..++++++|+.+|.++|.
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl-----------~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~ 269 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHL-----------VVASMLNILALVYRSLGKYDEAVNLYEEALT 269 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCH-----------HHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34448888999999999999999999987664422222 2456667789999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Q 013299 92 PCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAF 171 (446)
Q Consensus 92 ~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l 171 (446)
+ . . .-+ | ..+|.-..++.+||.+|
T Consensus 270 i----~-e------~~~---------------------------G------------------~~h~~va~~l~nLa~ly 293 (508)
T KOG1840|consen 270 I----R-E------EVF---------------------------G------------------EDHPAVAATLNNLAVLY 293 (508)
T ss_pred H----H-H------Hhc---------------------------C------------------CCCHHHHHHHHHHHHHH
Confidence 7 1 0 000 0 11233445677888888
Q ss_pred HhcCCHHHHHHHHHhhCCCC--------CCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhc
Q 013299 172 SIAGDLSSLATQIEELLPGI--------INRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGE 243 (446)
Q Consensus 172 ~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~ 243 (446)
...|++++|..++++|+.+- |.=...+.+++.++..+
T Consensus 294 ~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~----------------------------------- 338 (508)
T KOG1840|consen 294 YKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSM----------------------------------- 338 (508)
T ss_pred hccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHh-----------------------------------
Confidence 88899888888888776541 11122333344444444
Q ss_pred CCCCHHHHHHHHHHHHHHcC---CCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhC-------
Q 013299 244 YPDLAEEGATFASRALECLG---DGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTN------- 313 (446)
Q Consensus 244 ~~~~~~eA~~~~~~al~~~~---~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~------- 313 (446)
+++++|+.++++++++.. +.+....+..+.++|.+|..+ |++++|.+.|++|+ .+.
T Consensus 339 --~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~-----------gk~~ea~~~~k~ai-~~~~~~~~~~ 404 (508)
T KOG1840|consen 339 --NEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKM-----------GKYKEAEELYKKAI-QILRELLGKK 404 (508)
T ss_pred --cchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHh-----------cchhHHHHHHHHHH-HHHHhcccCc
Confidence 455555555555554432 111224567788999999776 56899999999999 653
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc----CCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 013299 314 -MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLE----GGSN--LKGWLLMARILSAQKRYEDAETILNAALD 380 (446)
Q Consensus 314 -P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~----P~~~--~~~~~~la~~~~~~g~~~eA~~~~~~al~ 380 (446)
+.....+++||..+.+++++++|...|.++..+. |+++ ...+.+||.+|..+|+|++|+++.++++.
T Consensus 405 ~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 405 DYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred ChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 4445678899999999999999999999987764 4432 24677888888888888888888888873
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.7e-16 Score=144.23 Aligned_cols=199 Identities=15% Similarity=0.017 Sum_probs=140.4
Q ss_pred cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcH---HHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChH
Q 013299 156 RIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRK---ERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLP 232 (446)
Q Consensus 156 ~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~ 232 (446)
..+..++.++.+|..+...|++++|+..|++++..+|+++ .+|+.+|.++...|++++|+..|++++ +.+|+++.
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l--~~~p~~~~ 105 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFI--RLHPNHPD 105 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH--HHCcCCCc
Confidence 3466788999999999999999999999999999999876 688999999999999999999999999 88998876
Q ss_pred ---HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHH
Q 013299 233 ---ALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAA 309 (446)
Q Consensus 233 ---a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al 309 (446)
+++..|.+++... +.++ ...+++++|+..|++++
T Consensus 106 ~~~a~~~~g~~~~~~~--------------------------------~~~~-----------~~~~~~~~A~~~~~~~~ 142 (235)
T TIGR03302 106 ADYAYYLRGLSNYNQI--------------------------------DRVD-----------RDQTAAREAFEAFQELI 142 (235)
T ss_pred hHHHHHHHHHHHHHhc--------------------------------cccc-----------CCHHHHHHHHHHHHHHH
Confidence 3444444332210 0011 11356788888888888
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCC-CCcH
Q 013299 310 RSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGK-WEQG 388 (446)
Q Consensus 310 ~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~ 388 (446)
..+|++..++..+..+... .. .. ......+|.++..+|++.+|+..+++++...|+ +...
T Consensus 143 -~~~p~~~~~~~a~~~~~~~----~~-------------~~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 203 (235)
T TIGR03302 143 -RRYPNSEYAPDAKKRMDYL----RN-------------RL-AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATE 203 (235)
T ss_pred -HHCCCChhHHHHHHHHHHH----HH-------------HH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchH
Confidence 8888887655333222110 00 01 133445777777888888888888888877662 1235
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 013299 389 ELLRTKAKVQLVQGQLKGAVETYTHLLAAL 418 (446)
Q Consensus 389 ~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~ 418 (446)
.+++.+|.++...|++++|..+++.+..-.
T Consensus 204 ~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 204 EALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 777888888888888888887777665443
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.2e-16 Score=135.45 Aligned_cols=196 Identities=16% Similarity=-0.000 Sum_probs=165.1
Q ss_pred ccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCC
Q 013299 130 SSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAG 209 (446)
Q Consensus 130 ~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 209 (446)
..|..+|++..|...+ +.+++.+|++..+|..++.+|...|+.+.|-+.|++|++++|++.++++|.|..+..+|
T Consensus 43 l~YL~~gd~~~A~~nl-----ekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 43 LGYLQQGDYAQAKKNL-----EKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHCCCHHHHHHHH-----HHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCC
Confidence 3466788999998776 66789999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhcCCCCCCCh---HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhh
Q 013299 210 EDLVALNLLRTLLSGSEDPKCL---PALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSK 286 (446)
Q Consensus 210 ~~~eA~~~~~~al~~~~~P~~~---~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~ 286 (446)
++++|...|++|+ .+|..+ ..+.+ .++|..+.|+++.|..+|+|+++..|..+. +...+......
T Consensus 118 ~~~eA~q~F~~Al---~~P~Y~~~s~t~eN-~G~Cal~~gq~~~A~~~l~raL~~dp~~~~-----~~l~~a~~~~~--- 185 (250)
T COG3063 118 RPEEAMQQFERAL---ADPAYGEPSDTLEN-LGLCALKAGQFDQAEEYLKRALELDPQFPP-----ALLELARLHYK--- 185 (250)
T ss_pred ChHHHHHHHHHHH---hCCCCCCcchhhhh-hHHHHhhcCCchhHHHHHHHHHHhCcCCCh-----HHHHHHHHHHh---
Confidence 9999999999999 577643 34444 567777889999999999999997665543 23333333322
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Q 013299 287 VAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN 351 (446)
Q Consensus 287 ~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~ 351 (446)
.+++..|...+++.. ..-+-.++.+.-...+-...|+-+.|-.+=.+..++.|...
T Consensus 186 --------~~~y~~Ar~~~~~~~-~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~ 241 (250)
T COG3063 186 --------AGDYAPARLYLERYQ-QRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSE 241 (250)
T ss_pred --------cccchHHHHHHHHHH-hcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 367899999999999 88888888887777777889999999999999999999973
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-15 Score=153.93 Aligned_cols=251 Identities=20% Similarity=0.122 Sum_probs=195.4
Q ss_pred cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCC--------CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcC---
Q 013299 156 RIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPG--------IINRKERYHILALCYYGAGEDLVALNLLRTLLSG--- 224 (446)
Q Consensus 156 ~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--- 224 (446)
..|.-..+..+++..|..+|++++|+..|++++.+ .|.-......+|.+|..++++.+|+..|++|++.
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 34666667778999999999999999999999998 6766666777999999999999999999999941
Q ss_pred CCCCCCh---HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC---CcchhhhHHHHHhhchhHhhhhhhhchHHHHHHH
Q 013299 225 SEDPKCL---PALLIASKICGEYPDLAEEGATFASRALECLGD---GCDQMESTANCLLGISLSAQSKVAITDFDRATRQ 298 (446)
Q Consensus 225 ~~~P~~~---~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~---~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~ 298 (446)
..-++++ .++..++..+ ...|++++|..++++|+++... .........+..++.++..+ +++
T Consensus 274 ~~G~~h~~va~~l~nLa~ly-~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~-----------~~~ 341 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLY-YKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSM-----------NEY 341 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHH-hccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHh-----------cch
Confidence 1124444 3455566554 5579999999999999987532 11223345566666666543 567
Q ss_pred HHHHHHHHHHHHhhC-----C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHH
Q 013299 299 AKALQALVSAARSTN-----M---RDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLE--------GGSNLKGWLLMARIL 362 (446)
Q Consensus 299 ~eAl~~~~~al~~~~-----P---~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~--------P~~~~~~~~~la~~~ 362 (446)
++|+.++++++ ++- + .-+....+||.+|..+|++++|+++|++|+.+. +.. ...++++|..+
T Consensus 342 Eea~~l~q~al-~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~-~~~l~~la~~~ 419 (508)
T KOG1840|consen 342 EEAKKLLQKAL-KIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGV-GKPLNQLAEAY 419 (508)
T ss_pred hHHHHHHHHHH-HHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhh-hHHHHHHHHHH
Confidence 88888888777 642 3 336688899999999999999999999999976 222 25678899999
Q ss_pred HHccCHHHHHHHHHHHHhhc----CCC-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Q 013299 363 SAQKRYEDAETILNAALDQT----GKW-EQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQV 420 (446)
Q Consensus 363 ~~~g~~~eA~~~~~~al~~~----p~~-~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~ 420 (446)
...+++.+|...|.+++.+. |+. +-...+.++|.+|..+|++++|++.-.+++..+..
T Consensus 420 ~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~ 482 (508)
T KOG1840|consen 420 EELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQ 482 (508)
T ss_pred HHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 99999999999999887653 310 34556789999999999999999999999987755
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.4e-14 Score=139.69 Aligned_cols=207 Identities=10% Similarity=-0.098 Sum_probs=152.7
Q ss_pred HHHHHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHH
Q 013299 9 LLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRR 88 (446)
Q Consensus 9 ~~~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~ 88 (446)
+..++..+|..+...|+.++|...+.++.+..+ .... ........+.++...|++++|+..+++
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~--------~~e~~~~~a~~~~~~g~~~~A~~~~~~ 68 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALA--------ARAT--------ERERAHVEALSAWIAGDLPKALALLEQ 68 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhc--------cCCC--------HHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 467889999999999999999999999888642 1111 112344556788999999999999999
Q ss_pred HhCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHH
Q 013299 89 ALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLS 168 (446)
Q Consensus 89 al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg 168 (446)
+++. .|.+...+.. +..+...+ ...+....+...+ .......|....++..+|
T Consensus 69 ~l~~----~P~~~~a~~~--~~~~~~~~----------------~~~~~~~~~~~~l-----~~~~~~~~~~~~~~~~~a 121 (355)
T cd05804 69 LLDD----YPRDLLALKL--HLGAFGLG----------------DFSGMRDHVARVL-----PLWAPENPDYWYLLGMLA 121 (355)
T ss_pred HHHH----CCCcHHHHHH--hHHHHHhc----------------ccccCchhHHHHH-----hccCcCCCCcHHHHHHHH
Confidence 9998 5544322111 11111111 1122333333322 123455677777888999
Q ss_pred HHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChH----HHHHHHHHHhcC
Q 013299 169 FAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLP----ALLIASKICGEY 244 (446)
Q Consensus 169 ~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~----a~~~~~~~~~~~ 244 (446)
.++...|++++|++.++++++++|+++.++..+|.+++..|++++|+..+++++ ...|.++. .+..++.+ +..
T Consensus 122 ~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l--~~~~~~~~~~~~~~~~la~~-~~~ 198 (355)
T cd05804 122 FGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWR--DTWDCSSMLRGHNWWHLALF-YLE 198 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhh--hccCCCcchhHHHHHHHHHH-HHH
Confidence 999999999999999999999999999999999999999999999999999999 77775432 23345554 555
Q ss_pred CCCHHHHHHHHHHHHHH
Q 013299 245 PDLAEEGATFASRALEC 261 (446)
Q Consensus 245 ~~~~~eA~~~~~~al~~ 261 (446)
.|++++|+..+++++..
T Consensus 199 ~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 199 RGDYEAALAIYDTHIAP 215 (355)
T ss_pred CCCHHHHHHHHHHHhcc
Confidence 79999999999999763
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.2e-14 Score=139.20 Aligned_cols=311 Identities=14% Similarity=0.012 Sum_probs=218.3
Q ss_pred HHHHHHhHHHHHHhCChHHHHHHHHHHhCC-CCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHH
Q 013299 63 NRAVELLPELWKLADAPRETIMSYRRALLP-CWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEA 141 (446)
Q Consensus 63 ~~a~~~l~~~~~~~g~~~eA~~~y~~al~~-~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA 141 (446)
..++..+|.++...|+.++|...|.++.+. +.+.++... ....+. .+...|++++|
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~---~~~~a~--------------------~~~~~g~~~~A 62 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERER---AHVEAL--------------------SAWIAGDLPKA 62 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHH---HHHHHH--------------------HHHHcCCHHHH
Confidence 356677788899999999999999999887 223222111 111111 23346789999
Q ss_pred HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHH
Q 013299 142 ILLLMILLRKVALKRIEWDPSILDHLSFAFSI----AGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNL 217 (446)
Q Consensus 142 ~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~ 217 (446)
+..+ +.++..+|++..++.. +..+.. .+....+.+.++.....+|+...++..+|.++...|++++|+..
T Consensus 63 ~~~~-----~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 136 (355)
T cd05804 63 LALL-----EQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEA 136 (355)
T ss_pred HHHH-----HHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8875 5667889999988775 444444 45556666666666678888888999999999999999999999
Q ss_pred HHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHH
Q 013299 218 LRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATR 297 (446)
Q Consensus 218 ~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~ 297 (446)
+++++ .++|+++.++..++.+++. .|++++|+.++++++...+.+ .......+..++.++... |+
T Consensus 137 ~~~al--~~~p~~~~~~~~la~i~~~-~g~~~eA~~~l~~~l~~~~~~-~~~~~~~~~~la~~~~~~-----------G~ 201 (355)
T cd05804 137 ARRAL--ELNPDDAWAVHAVAHVLEM-QGRFKEGIAFMESWRDTWDCS-SMLRGHNWWHLALFYLER-----------GD 201 (355)
T ss_pred HHHHH--hhCCCCcHHHHHHHHHHHH-cCCHHHHHHHHHhhhhccCCC-cchhHHHHHHHHHHHHHC-----------CC
Confidence 99999 9999999998888888765 799999999999999965432 222344566788887654 57
Q ss_pred HHHHHHHHHHHHHhhCC--CCHHHHHHH---HHHHHHcCCHHHHHHH---HHHHHhhcCCCC-HHHHHHHHHHHHHccCH
Q 013299 298 QAKALQALVSAARSTNM--RDLSILYRL---SLEYAEQRKLNAAHYY---AKMLLKLEGGSN-LKGWLLMARILSAQKRY 368 (446)
Q Consensus 298 ~~eAl~~~~~al~~~~P--~~~~a~~~l---g~~~~~~~~~~~A~~~---~~~al~l~P~~~-~~~~~~la~~~~~~g~~ 368 (446)
+++|+..|++++ ...| ......+.. ...+...|..+.+... ........|... .......+.++...|+.
T Consensus 202 ~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 280 (355)
T cd05804 202 YEAALAIYDTHI-APSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDK 280 (355)
T ss_pred HHHHHHHHHHHh-ccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCH
Confidence 899999999999 8887 333222222 1222233432222222 111111112210 13334688889999999
Q ss_pred HHHHHHHHHHHhhcC-------CCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 013299 369 EDAETILNAALDQTG-------KWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAAL 418 (446)
Q Consensus 369 ~eA~~~~~~al~~~p-------~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~ 418 (446)
++|...++......- .+....+....|.++...|++++|++.+..++.+.
T Consensus 281 ~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 281 DALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 999999988765321 00135667788999999999999999999999987
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.3e-13 Score=146.83 Aligned_cols=258 Identities=10% Similarity=-0.019 Sum_probs=194.0
Q ss_pred ccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCC----CCCCcHHHHHHHHHHH
Q 013299 130 SSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLP----GIINRKERYHILALCY 205 (446)
Q Consensus 130 ~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~----~~p~~~~~~~~lg~~~ 205 (446)
..|...|++++|+.++.... -....-|...|..+-.++.+.|+.++|.+.|++... +.|+ ...|..+...|
T Consensus 515 ~gy~k~G~~eeAl~lf~~M~----~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay 589 (1060)
T PLN03218 515 DGCARAGQVAKAFGAYGIMR----SKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKAC 589 (1060)
T ss_pred HHHHHCcCHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHH
Confidence 35667788999988763321 112223577888899999999999999999988864 3454 56788888899
Q ss_pred HHCCChHHHHHHHHHHhcCCCC-CCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc-CCCcchhhhHHHHHhhchhHh
Q 013299 206 YGAGEDLVALNLLRTLLSGSED-PKCLPALLIASKICGEYPDLAEEGATFASRALECL-GDGCDQMESTANCLLGISLSA 283 (446)
Q Consensus 206 ~~~g~~~eA~~~~~~al~~~~~-P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~-~~~~~~~~~~a~~~lg~~~~~ 283 (446)
.+.|++++|...|++.. ..+ +.++..+..+...+ .+.|++++|+..|++..+.- .|+ ...|..+..++..
T Consensus 590 ~k~G~ldeA~elf~~M~--e~gi~p~~~tynsLI~ay-~k~G~~deAl~lf~eM~~~Gv~PD-----~~TynsLI~a~~k 661 (1060)
T PLN03218 590 ANAGQVDRAKEVYQMIH--EYNIKGTPEVYTIAVNSC-SQKGDWDFALSIYDDMKKKGVKPD-----EVFFSALVDVAGH 661 (1060)
T ss_pred HHCCCHHHHHHHHHHHH--HcCCCCChHHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHh
Confidence 99999999999999988 443 33445555554443 44788999999999888742 222 3455555555544
Q ss_pred hhhhhhchHHHHHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hcCCCCHHHHHHHHH
Q 013299 284 QSKVAITDFDRATRQAKALQALVSAARSTN-MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLK--LEGGSNLKGWLLMAR 360 (446)
Q Consensus 284 ~~~~~~~~~~~~~~~~eAl~~~~~al~~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~~~la~ 360 (446)
.|++++|.+.+++.. +.. +.|..++..+...|.+.|++++|+..|++... +.|+ ...|..+..
T Consensus 662 -----------~G~~eeA~~l~~eM~-k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pd--vvtyN~LI~ 727 (1060)
T PLN03218 662 -----------AGDLDKAFEILQDAR-KQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPT--VSTMNALIT 727 (1060)
T ss_pred -----------CCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHH
Confidence 356889999999988 654 56778899999999999999999999998865 4565 478999999
Q ss_pred HHHHccCHHHHHHHHHHHHhh--cCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 013299 361 ILSAQKRYEDAETILNAALDQ--TGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAA 417 (446)
Q Consensus 361 ~~~~~g~~~eA~~~~~~al~~--~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l 417 (446)
.+.+.|++++|+..+++.... .| +...|..+...+.+.|++++|...+.+.++.
T Consensus 728 gy~k~G~~eeAlelf~eM~~~Gi~P---d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~ 783 (1060)
T PLN03218 728 ALCEGNQLPKALEVLSEMKRLGLCP---NTITYSILLVASERKDDADVGLDLLSQAKED 783 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 999999999999999987753 46 5566777778889999999999988887653
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.9e-16 Score=135.70 Aligned_cols=116 Identities=14% Similarity=0.056 Sum_probs=107.8
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 013299 302 LQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQ 381 (446)
Q Consensus 302 l~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 381 (446)
...|++++ +++|++ ++.+|.++...|++++|+.+|++++.++|++ ..+|.++|.++..+|++++|+..|++++.+
T Consensus 13 ~~~~~~al-~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~-~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLL-SVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWS-WRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHH-HcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 36899999 999986 6789999999999999999999999999999 599999999999999999999999999999
Q ss_pred cCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhh
Q 013299 382 TGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKT 424 (446)
Q Consensus 382 ~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~ 424 (446)
+| +++.+++++|.++...|++++|+..|++++++.|++.+.
T Consensus 88 ~p--~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~ 128 (144)
T PRK15359 88 DA--SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASW 128 (144)
T ss_pred CC--CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Confidence 99 899999999999999999999999999999998654443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=8.1e-15 Score=140.04 Aligned_cols=282 Identities=14% Similarity=0.073 Sum_probs=228.2
Q ss_pred HHHHHhCChHHHHHHHHHHhCCCCCCChHHHHHHHHHHHH-HHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHH
Q 013299 71 ELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAI-FLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILL 149 (446)
Q Consensus 71 ~~~~~~g~~~eA~~~y~~al~~~~~~~~~~~~~l~~~~a~-~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~ 149 (446)
..|+++|+++.|+++++-.-+. |.........++.. .++.++ .++..|...
T Consensus 427 ~~~lk~~d~~~aieilkv~~~k----dnk~~saaa~nl~~l~flqgg-------------------k~~~~aqqy----- 478 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKK----DNKTASAAANNLCALRFLQGG-------------------KDFADAQQY----- 478 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhc----cchhhHHHhhhhHHHHHHhcc-------------------cchhHHHHH-----
Confidence 3578899999999988765555 43332222233322 222222 134445443
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCC
Q 013299 150 RKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPK 229 (446)
Q Consensus 150 ~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~ 229 (446)
.+.++..+--++.+..+.|.+-...|++++|.+.|+.++.-+..-.++.|+.|..+..+|+.++|+.+|-+.- .+--+
T Consensus 479 ad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh--~il~n 556 (840)
T KOG2003|consen 479 ADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLH--AILLN 556 (840)
T ss_pred HHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHH--HHHHh
Confidence 2455666677889999999999999999999999999999999999999999999999999999999998876 56667
Q ss_pred ChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHH
Q 013299 230 CLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAA 309 (446)
Q Consensus 230 ~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al 309 (446)
+.++++.++.++ +.+.+..+|++++-++....|.+ +.++..||..|.+.| +-.+|.+++-..-
T Consensus 557 n~evl~qianiy-e~led~aqaie~~~q~~slip~d-----p~ilskl~dlydqeg-----------dksqafq~~ydsy 619 (840)
T KOG2003|consen 557 NAEVLVQIANIY-ELLEDPAQAIELLMQANSLIPND-----PAILSKLADLYDQEG-----------DKSQAFQCHYDSY 619 (840)
T ss_pred hHHHHHHHHHHH-HHhhCHHHHHHHHHHhcccCCCC-----HHHHHHHHHHhhccc-----------chhhhhhhhhhcc
Confidence 888888888874 55788999999999999977766 467788999886654 5678999998899
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHH
Q 013299 310 RSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGE 389 (446)
Q Consensus 310 ~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~ 389 (446)
+.-|.|.++.-.||.-|....=.++|+.+|++|--+.|+. +.-.+..+.++.+.|+|+.|...|+..-+..| ++.+
T Consensus 620 -ryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~-~kwqlmiasc~rrsgnyqka~d~yk~~hrkfp--edld 695 (840)
T KOG2003|consen 620 -RYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQ-SKWQLMIASCFRRSGNYQKAFDLYKDIHRKFP--EDLD 695 (840)
T ss_pred -cccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccH-HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCc--cchH
Confidence 8999999999999999999999999999999999999996 35555679999999999999999999999999 8988
Q ss_pred HHHHHHHHHHHhCC
Q 013299 390 LLRTKAKVQLVQGQ 403 (446)
Q Consensus 390 ~~~~~a~~~~~~g~ 403 (446)
.+-.+..+...+|-
T Consensus 696 clkflvri~~dlgl 709 (840)
T KOG2003|consen 696 CLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHhccccc
Confidence 88877777766663
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=6e-14 Score=151.04 Aligned_cols=340 Identities=10% Similarity=-0.034 Sum_probs=244.9
Q ss_pred HHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCc-----------cccHHHHH------------HHHHHH
Q 013299 12 AIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGA-----------DCKLQETL------------NRAVEL 68 (446)
Q Consensus 12 ~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~-----------~~~l~~~~------------~~a~~~ 68 (446)
.|.....+|.+.|++++|++.|++.++.. ..|+.... ....+..+ ..+...
T Consensus 191 t~n~li~~~~~~g~~~~A~~lf~~M~~~g------~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~ 264 (697)
T PLN03081 191 SWGTIIGGLVDAGNYREAFALFREMWEDG------SDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCA 264 (697)
T ss_pred eHHHHHHHHHHCcCHHHHHHHHHHHHHhC------CCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHH
Confidence 35666677788899999999998887541 02221100 00000000 001122
Q ss_pred hHHHHHHhCChHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHH
Q 013299 69 LPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMIL 148 (446)
Q Consensus 69 l~~~~~~~g~~~eA~~~y~~al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~ 148 (446)
+-..|.+.|++++|...|++.... +... .. .+...|...|+.++|+.++...
T Consensus 265 Li~~y~k~g~~~~A~~vf~~m~~~----~~vt----~n--------------------~li~~y~~~g~~~eA~~lf~~M 316 (697)
T PLN03081 265 LIDMYSKCGDIEDARCVFDGMPEK----TTVA----WN--------------------SMLAGYALHGYSEEALCLYYEM 316 (697)
T ss_pred HHHHHHHCCCHHHHHHHHHhCCCC----ChhH----HH--------------------HHHHHHHhCCCHHHHHHHHHHH
Confidence 345677788888888888776443 2211 01 1123456678999999887332
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCC
Q 013299 149 LRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGI-INRKERYHILALCYYGAGEDLVALNLLRTLLSGSED 227 (446)
Q Consensus 149 ~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~ 227 (446)
. .....-|...+..+..++.+.|++++|.+.++.+++.. +.+..++..|...|.+.|++++|...|++.. .
T Consensus 317 ~----~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~--~-- 388 (697)
T PLN03081 317 R----DSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP--R-- 388 (697)
T ss_pred H----HcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC--C--
Confidence 1 11223366688899999999999999999999998876 6677889999999999999999999999977 4
Q ss_pred CCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc-CCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHH
Q 013299 228 PKCLPALLIASKICGEYPDLAEEGATFASRALECL-GDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALV 306 (446)
Q Consensus 228 P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~-~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~ 306 (446)
| +...|..+... +.+.|+.++|+..|++.++.- .|+ ...+..+-.++.. .|..++|.+.|+
T Consensus 389 ~-d~~t~n~lI~~-y~~~G~~~~A~~lf~~M~~~g~~Pd-----~~T~~~ll~a~~~-----------~g~~~~a~~~f~ 450 (697)
T PLN03081 389 K-NLISWNALIAG-YGNHGRGTKAVEMFERMIAEGVAPN-----HVTFLAVLSACRY-----------SGLSEQGWEIFQ 450 (697)
T ss_pred C-CeeeHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCC-----HHHHHHHHHHHhc-----------CCcHHHHHHHHH
Confidence 4 33455555444 445789999999999988742 222 2334444444433 357899999999
Q ss_pred HHHHhhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCC
Q 013299 307 SAARSTNM--RDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGK 384 (446)
Q Consensus 307 ~al~~~~P--~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~ 384 (446)
... +..+ .+...+..+...+.+.|++++|.+.+++. ...|+ ...|..+...+...|+++.|...+++.++..|
T Consensus 451 ~m~-~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p~--~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p- 525 (697)
T PLN03081 451 SMS-ENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKPT--VNMWAALLTACRIHKNLELGRLAAEKLYGMGP- 525 (697)
T ss_pred HHH-HhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCCC--HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCC-
Confidence 998 6443 34457888999999999999999999875 45666 37899999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 013299 385 WEQGELLRTKAKVQLVQGQLKGAVETYTHLLAA 417 (446)
Q Consensus 385 ~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l 417 (446)
++...|..+..++...|++++|.+.++...+.
T Consensus 526 -~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 526 -EKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred -CCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 78888999999999999999999999987654
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1e-13 Score=137.91 Aligned_cols=268 Identities=17% Similarity=0.080 Sum_probs=233.3
Q ss_pred cccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCC
Q 013299 131 SFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGE 210 (446)
Q Consensus 131 ~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 210 (446)
.+...+-++-|+..| ..+++..|....+|......-..-|..++-...+++++...|.....|...+..++..|+
T Consensus 525 ~~~k~~~~~carAVy-----a~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agd 599 (913)
T KOG0495|consen 525 SCEKRPAIECARAVY-----AHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGD 599 (913)
T ss_pred HHHhcchHHHHHHHH-----HHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCC
Confidence 455555566666554 445778899999999988888888999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhc
Q 013299 211 DLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAIT 290 (446)
Q Consensus 211 ~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~ 290 (446)
...|..++.++. ..+|++-+.++....+-.. ..+++.|...+.++....+. ..+|+--......
T Consensus 600 v~~ar~il~~af--~~~pnseeiwlaavKle~e-n~e~eraR~llakar~~sgT------eRv~mKs~~~er~------- 663 (913)
T KOG0495|consen 600 VPAARVILDQAF--EANPNSEEIWLAAVKLEFE-NDELERARDLLAKARSISGT------ERVWMKSANLERY------- 663 (913)
T ss_pred cHHHHHHHHHHH--HhCCCcHHHHHHHHHHhhc-cccHHHHHHHHHHHhccCCc------chhhHHHhHHHHH-------
Confidence 999999999999 8999999999877766554 57899999999999884332 3445444433222
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHH
Q 013299 291 DFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYED 370 (446)
Q Consensus 291 ~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~e 370 (446)
++..++|+..+++++ +.-|+.+..|+.+|+++.++++.+.|...|...++.-|... ..|..|+.+-.+.|..-.
T Consensus 664 ----ld~~eeA~rllEe~l-k~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~i-pLWllLakleEk~~~~~r 737 (913)
T KOG0495|consen 664 ----LDNVEEALRLLEEAL-KSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSI-PLWLLLAKLEEKDGQLVR 737 (913)
T ss_pred ----hhhHHHHHHHHHHHH-HhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCc-hHHHHHHHHHHHhcchhh
Confidence 467899999999999 99999999999999999999999999999999999999995 999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhccC
Q 013299 371 AETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSS 427 (446)
Q Consensus 371 A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~~~~ 427 (446)
|...++++.-.+| ++...|.-.-....+.|..+.|.....++|+=.|...--|-+
T Consensus 738 AR~ildrarlkNP--k~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaE 792 (913)
T KOG0495|consen 738 ARSILDRARLKNP--KNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAE 792 (913)
T ss_pred HHHHHHHHHhcCC--CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHH
Confidence 9999999999999 899999999999999999999999999999998876655543
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.3e-15 Score=140.18 Aligned_cols=180 Identities=16% Similarity=0.022 Sum_probs=126.4
Q ss_pred CCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcch
Q 013299 189 PGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQ 268 (446)
Q Consensus 189 ~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~ 268 (446)
..++..++.++.+|..+...|++++|+..|++++ ..+|+++..
T Consensus 27 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~--~~~p~~~~~----------------------------------- 69 (235)
T TIGR03302 27 PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALE--SRYPFSPYA----------------------------------- 69 (235)
T ss_pred CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhCCCchhH-----------------------------------
Confidence 4567788899999999999999999999999999 888877531
Q ss_pred hhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHH---HHHHHHHHHHHc--------CCHHHHH
Q 013299 269 MESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLS---ILYRLSLEYAEQ--------RKLNAAH 337 (446)
Q Consensus 269 ~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~---a~~~lg~~~~~~--------~~~~~A~ 337 (446)
..+++.+|.++... +++++|+..|++++ +.+|+++. +++.+|.++... |++++|+
T Consensus 70 --~~a~~~la~~~~~~-----------~~~~~A~~~~~~~l-~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~ 135 (235)
T TIGR03302 70 --EQAQLDLAYAYYKS-----------GDYAEAIAAADRFI-RLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAF 135 (235)
T ss_pred --HHHHHHHHHHHHhc-----------CCHHHHHHHHHHHH-HHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHH
Confidence 12333444444332 34667777777777 77777665 577777777765 8899999
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 013299 338 YYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAA 417 (446)
Q Consensus 338 ~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l 417 (446)
..|++++..+|++. .++..+..+... .+ ......+.+|.++..+|++++|+..|+++++.
T Consensus 136 ~~~~~~~~~~p~~~-~~~~a~~~~~~~-----------------~~--~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~ 195 (235)
T TIGR03302 136 EAFQELIRRYPNSE-YAPDAKKRMDYL-----------------RN--RLAGKELYVARFYLKRGAYVAAINRFETVVEN 195 (235)
T ss_pred HHHHHHHHHCCCCh-hHHHHHHHHHHH-----------------HH--HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 99999999999984 665433322110 11 11233457889999999999999999999999
Q ss_pred HhhhhhhccCCcchhhHHhhhh
Q 013299 418 LQVQTKTFSSDKRFYKVYFMRK 439 (446)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~ 439 (446)
.|+.+......-..-.+|...+
T Consensus 196 ~p~~~~~~~a~~~l~~~~~~lg 217 (235)
T TIGR03302 196 YPDTPATEEALARLVEAYLKLG 217 (235)
T ss_pred CCCCcchHHHHHHHHHHHHHcC
Confidence 8876544443344444444433
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.5e-16 Score=131.63 Aligned_cols=127 Identities=9% Similarity=0.016 Sum_probs=113.2
Q ss_pred HHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 013299 252 ATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQR 331 (446)
Q Consensus 252 ~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~ 331 (446)
..+++++++. .|+ .+..+|.++... |++++|+..|++++ .++|+++.+++++|.++...|
T Consensus 13 ~~~~~~al~~-~p~-------~~~~~g~~~~~~-----------g~~~~A~~~~~~al-~~~P~~~~a~~~lg~~~~~~g 72 (144)
T PRK15359 13 EDILKQLLSV-DPE-------TVYASGYASWQE-----------GDYSRAVIDFSWLV-MAQPWSWRAHIALAGTWMMLK 72 (144)
T ss_pred HHHHHHHHHc-CHH-------HHHHHHHHHHHc-----------CCHHHHHHHHHHHH-HcCCCcHHHHHHHHHHHHHHh
Confidence 4678888884 332 255677777554 57899999999999 999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHh
Q 013299 332 KLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQ 401 (446)
Q Consensus 332 ~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~ 401 (446)
++++|+..|+++++++|+++ .+|+++|.++..+|++++|+..|+++++..| +++..+.++|.+....
T Consensus 73 ~~~~A~~~y~~Al~l~p~~~-~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p--~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 73 EYTTAINFYGHALMLDASHP-EPVYQTGVCLKMMGEPGLAREAFQTAIKMSY--ADASWSEIRQNAQIMV 139 (144)
T ss_pred hHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHH
Confidence 99999999999999999995 9999999999999999999999999999999 9999999998877654
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.9e-14 Score=131.46 Aligned_cols=264 Identities=14% Similarity=0.040 Sum_probs=157.5
Q ss_pred cccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcH-----HHHHHHHHHH
Q 013299 131 SFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRK-----ERYHILALCY 205 (446)
Q Consensus 131 ~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~lg~~~ 205 (446)
-|.-.++.++|+.++ -.++..+|...+++..||..+...|..+.||..=+..+. .|+-+ -+.+.||.-|
T Consensus 44 NfLLs~Q~dKAvdlF-----~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~Dy 117 (389)
T COG2956 44 NFLLSNQPDKAVDLF-----LEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRDY 117 (389)
T ss_pred HHHhhcCcchHHHHH-----HHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHH
Confidence 344455666666665 224455666667777777777777777777765554443 34443 3566667777
Q ss_pred HHCCChHHHHHHHHHHhcCCCCCCCh-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhh
Q 013299 206 YGAGEDLVALNLLRTLLSGSEDPKCL-PALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQ 284 (446)
Q Consensus 206 ~~~g~~~eA~~~~~~al~~~~~P~~~-~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~ 284 (446)
+..|-++.|+..|.... . .|+.. .+.-.+..+ |+....+++||+..++.....+... ...++..|...
T Consensus 118 m~aGl~DRAE~~f~~L~--d-e~efa~~AlqqLl~I-YQ~treW~KAId~A~~L~k~~~q~~-------~~eIAqfyCEL 186 (389)
T COG2956 118 MAAGLLDRAEDIFNQLV--D-EGEFAEGALQQLLNI-YQATREWEKAIDVAERLVKLGGQTY-------RVEIAQFYCEL 186 (389)
T ss_pred HHhhhhhHHHHHHHHHh--c-chhhhHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHcCCccc-------hhHHHHHHHHH
Confidence 77777777777777766 2 24433 344334444 3445566677777766666433221 12223333322
Q ss_pred hhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q 013299 285 SKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSA 364 (446)
Q Consensus 285 ~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~ 364 (446)
+... ....+.+.|+..+.+|+ +-||+...+-..+|.+....|+++.|++.++++++.||+.-.++...|..+|..
T Consensus 187 Aq~~----~~~~~~d~A~~~l~kAl-qa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~ 261 (389)
T COG2956 187 AQQA----LASSDVDRARELLKKAL-QADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQ 261 (389)
T ss_pred HHHH----hhhhhHHHHHHHHHHHH-hhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 2211 23455666777777777 777777777777777777777777777777777777776633566667777777
Q ss_pred ccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Q 013299 365 QKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQ 419 (446)
Q Consensus 365 ~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~ 419 (446)
+|+.++.+.++.++.+.++ ...+-..++.+.....-.++|.....+.|...|
T Consensus 262 lg~~~~~~~fL~~~~~~~~---g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~P 313 (389)
T COG2956 262 LGKPAEGLNFLRRAMETNT---GADAELMLADLIELQEGIDAAQAYLTRQLRRKP 313 (389)
T ss_pred hCCHHHHHHHHHHHHHccC---CccHHHHHHHHHHHhhChHHHHHHHHHHHhhCC
Confidence 7777777777777776666 334444555555555566666666666555543
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.6e-14 Score=147.65 Aligned_cols=335 Identities=14% Similarity=0.102 Sum_probs=242.7
Q ss_pred HHHHHHHhHHHHHHhCChHHHHHHHHHHhCCCCCCChHHHHH---H----------HHHHHHHHhhhcCCCCCCc----c
Q 013299 62 LNRAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAK---L----------QKEFAIFLLYCGGETCPPN----L 124 (446)
Q Consensus 62 ~~~a~~~l~~~~~~~g~~~eA~~~y~~al~~~~~~~~~~~~~---l----------~~~~a~~ll~~~~~~~~~~----~ 124 (446)
+..++-.+|.+|...-+...|-..|++|.++ |+..... + ...+.+. ++.+ +.++.. .
T Consensus 491 ~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeL----Datdaeaaaa~adtyae~~~we~a~~I~-l~~~-qka~a~~~k~n 564 (1238)
T KOG1127|consen 491 LAPAFAFLGQIYRDSDDMKRAKKCFDKAFEL----DATDAEAAAASADTYAEESTWEEAFEIC-LRAA-QKAPAFACKEN 564 (1238)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CchhhhhHHHHHHHhhccccHHHHHHHH-HHHh-hhchHHHHHhh
Confidence 6789999999999988999999999999999 5533211 1 1112221 1111 111111 1
Q ss_pred ccccCccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHH
Q 013299 125 RSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALC 204 (446)
Q Consensus 125 ~~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 204 (446)
....+..|...+++-.|+.-+ +.+++.+|.|...|..+|.+|...|++..|+..|.+|..++|.+.-+.|..+.+
T Consensus 565 W~~rG~yyLea~n~h~aV~~f-----QsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ 639 (1238)
T KOG1127|consen 565 WVQRGPYYLEAHNLHGAVCEF-----QSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVM 639 (1238)
T ss_pred hhhccccccCccchhhHHHHH-----HHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHH
Confidence 123555667778888888875 677888999999999999999999999999999999999999999999999999
Q ss_pred HHHCCChHHHHHHHHHHhcCCCCCCC-------hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc------C--------
Q 013299 205 YYGAGEDLVALNLLRTLLSGSEDPKC-------LPALLIASKICGEYPDLAEEGATFASRALECL------G-------- 263 (446)
Q Consensus 205 ~~~~g~~~eA~~~~~~al~~~~~P~~-------~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~------~-------- 263 (446)
....|+|.+|+..+...+ ....+. .+.++..+..++. .|-...|+.++++.++.. .
T Consensus 640 ecd~GkYkeald~l~~ii--~~~s~e~~~q~gLaE~~ir~akd~~~-~gf~~kavd~~eksie~f~~~l~h~~~~~~~~W 716 (1238)
T KOG1127|consen 640 ECDNGKYKEALDALGLII--YAFSLERTGQNGLAESVIRDAKDSAI-TGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQW 716 (1238)
T ss_pred HHHhhhHHHHHHHHHHHH--HHHHHHHHhhhhHHHHHHHHHHHHHH-HHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 999999999999988877 222222 1222222222221 123333444444333211 0
Q ss_pred --------------CCcch-------------------------------------hhhHHHHHhhchhHhhhhhhhchH
Q 013299 264 --------------DGCDQ-------------------------------------MESTANCLLGISLSAQSKVAITDF 292 (446)
Q Consensus 264 --------------~~~~~-------------------------------------~~~~a~~~lg~~~~~~~~~~~~~~ 292 (446)
|+... ..+..|+++|+.|...-....
T Consensus 717 i~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~--- 793 (1238)
T KOG1127|consen 717 IVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLG--- 793 (1238)
T ss_pred HHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcC---
Confidence 00000 001224444443332110000
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHH
Q 013299 293 DRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAE 372 (446)
Q Consensus 293 ~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~ 372 (446)
+...+-..|+.++++++ +++.++...|+.||.+ ...|.+.-|-.+|-+++.++|.+ ...|.|+|.+.....+++-|.
T Consensus 794 et~~~~~~Ai~c~KkaV-~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~-~~~W~NlgvL~l~n~d~E~A~ 870 (1238)
T KOG1127|consen 794 ETMKDACTAIRCCKKAV-SLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTC-HCQWLNLGVLVLENQDFEHAE 870 (1238)
T ss_pred CcchhHHHHHHHHHHHH-HHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccc-hhheeccceeEEecccHHHhh
Confidence 11223368999999999 9999999999999988 66689999999999999999999 599999999999999999999
Q ss_pred HHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 013299 373 TILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAAL 418 (446)
Q Consensus 373 ~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~ 418 (446)
..+.++..++| +|...|...+.+....|+.-+++..+.+.-++.
T Consensus 871 ~af~~~qSLdP--~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~ 914 (1238)
T KOG1127|consen 871 PAFSSVQSLDP--LNLVQWLGEALIPEAVGRIIERLILFAHSDELC 914 (1238)
T ss_pred HHHHhhhhcCc--hhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhh
Confidence 99999999999 999999999999999999999999999966665
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.67 E-value=7e-13 Score=132.03 Aligned_cols=308 Identities=16% Similarity=0.050 Sum_probs=165.4
Q ss_pred HHHhHHHHHHhCChHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHH
Q 013299 66 VELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLL 145 (446)
Q Consensus 66 ~~~l~~~~~~~g~~~eA~~~y~~al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l 145 (446)
+..-+..+.+.+-++=|...|..+|+. .|.... +....+.+.-. .|-.++-..+|
T Consensus 519 w~~da~~~~k~~~~~carAVya~alqv----fp~k~s-lWlra~~~ek~--------------------hgt~Esl~All 573 (913)
T KOG0495|consen 519 WLDDAQSCEKRPAIECARAVYAHALQV----FPCKKS-LWLRAAMFEKS--------------------HGTRESLEALL 573 (913)
T ss_pred HhhhHHHHHhcchHHHHHHHHHHHHhh----ccchhH-HHHHHHHHHHh--------------------cCcHHHHHHHH
Confidence 333446788899999999999999998 654321 21222111100 11122211111
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCC
Q 013299 146 MILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGS 225 (446)
Q Consensus 146 ~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~ 225 (446)
+.++...|.....|...+.-....|+...|...+.++++.+|++.+.|+.--.+......+++|...|.++- .
T Consensus 574 -----qkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar--~ 646 (913)
T KOG0495|consen 574 -----QKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKAR--S 646 (913)
T ss_pred -----HHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHh--c
Confidence 233444565555555555555556666666666666666666666666655555556666666666666665 4
Q ss_pred CCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHH
Q 013299 226 EDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQAL 305 (446)
Q Consensus 226 ~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~ 305 (446)
..|..- +++-.+. ...-++..++|+..++++++..|.- ...|+.+|.++.++ ++.+.|...|
T Consensus 647 ~sgTeR-v~mKs~~-~er~ld~~eeA~rllEe~lk~fp~f-----~Kl~lmlGQi~e~~-----------~~ie~aR~aY 708 (913)
T KOG0495|consen 647 ISGTER-VWMKSAN-LERYLDNVEEALRLLEEALKSFPDF-----HKLWLMLGQIEEQM-----------ENIEMAREAY 708 (913)
T ss_pred cCCcch-hhHHHhH-HHHHhhhHHHHHHHHHHHHHhCCch-----HHHHHHHhHHHHHH-----------HHHHHHHHHH
Confidence 444322 2222111 1223455566666666666644321 34555666655433 3455555555
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCC
Q 013299 306 VSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKW 385 (446)
Q Consensus 306 ~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~ 385 (446)
...+ +.-|+.+..|..|+.+-...|.+-.|...+.++.--||+++ ..|...-.+..+.|..+.|...+.+||+.-|+.
T Consensus 709 ~~G~-k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~-~lwle~Ir~ElR~gn~~~a~~lmakALQecp~s 786 (913)
T KOG0495|consen 709 LQGT-KKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNA-LLWLESIRMELRAGNKEQAELLMAKALQECPSS 786 (913)
T ss_pred Hhcc-ccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcc-hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc
Confidence 5555 55555555555555555555555555555555555555552 555555555555555555555555555554420
Q ss_pred ----------------------------CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhc
Q 013299 386 ----------------------------EQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTF 425 (446)
Q Consensus 386 ----------------------------~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~~ 425 (446)
.++.++...|.++....+++.|.+.|.+++.+.|++.++|
T Consensus 787 g~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~w 854 (913)
T KOG0495|consen 787 GLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAW 854 (913)
T ss_pred chhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHH
Confidence 2334444555555555566666666666666665555554
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.7e-15 Score=136.72 Aligned_cols=121 Identities=17% Similarity=0.164 Sum_probs=114.8
Q ss_pred HHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH-HHccC--HHHHH
Q 013299 296 TRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARIL-SAQKR--YEDAE 372 (446)
Q Consensus 296 ~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~-~~~g~--~~eA~ 372 (446)
++.++++..+++++ +.+|+|+++|+.||.++...|++++|+..|+++++++|++ ..++..+|.++ ...|+ +++|.
T Consensus 53 ~~~~~~i~~l~~~L-~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~-~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 53 QTPEAQLQALQDKI-RANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGEN-AELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred hhHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhcCCCCcHHHH
Confidence 45689999999999 9999999999999999999999999999999999999999 59999999986 67787 59999
Q ss_pred HHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Q 013299 373 TILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQV 420 (446)
Q Consensus 373 ~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~ 420 (446)
..++++++.+| ++..+++++|.++...|++++|+..|++++++.|.
T Consensus 131 ~~l~~al~~dP--~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 131 EMIDKALALDA--NEVTALMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred HHHHHHHHhCC--CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 99999999999 89999999999999999999999999999999875
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=3e-12 Score=140.96 Aligned_cols=327 Identities=11% Similarity=-0.007 Sum_probs=221.3
Q ss_pred HHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHhCCCCC
Q 013299 16 KAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRALLPCWN 95 (446)
Q Consensus 16 ~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~al~~~~~ 95 (446)
.-.++.+.|++++|.+.+..+.+.. -.|+. ..+..+-..|.+.|++++|..+|+++.+....
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~G------l~pD~------------~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~ 504 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAG------LKADC------------KLYTTLISTCAKSGKVDAMFEVFHEMVNAGVE 504 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcC------CCCCH------------HHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCC
Confidence 3344556778888888777766531 02221 12333334566677777777777776654211
Q ss_pred CChHHHHHHHH--------HHHHHHhhhcCC-CCCCccc--cccCccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHH
Q 013299 96 LDAETTAKLQK--------EFAIFLLYCGGE-TCPPNLR--SQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSIL 164 (446)
Q Consensus 96 ~~~~~~~~l~~--------~~a~~ll~~~~~-~~~~~~~--~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~ 164 (446)
++......+.. ..|.-++..+.. ...|+.. ..+...+...|++++|..++...... .....| |...|
T Consensus 505 PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~-~~gi~P-D~vTy 582 (1060)
T PLN03218 505 ANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAE-THPIDP-DHITV 582 (1060)
T ss_pred CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-cCCCCC-cHHHH
Confidence 12211111100 111111111111 1122221 12334566788999999886322100 001223 46688
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhCCCC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhc
Q 013299 165 DHLSFAFSIAGDLSSLATQIEELLPGI-INRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGE 243 (446)
Q Consensus 165 ~~lg~~l~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~ 243 (446)
..+-.++.+.|++++|.+.|+++.+.+ +.++..|..+...|.+.|++++|+..|++..+....|+.. .+..+...+ .
T Consensus 583 naLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~-TynsLI~a~-~ 660 (1060)
T PLN03218 583 GALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEV-FFSALVDVA-G 660 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHH-H
Confidence 888899999999999999999999886 5678899999999999999999999999998434578643 444444444 4
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhC-CCCHHHHHH
Q 013299 244 YPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTN-MRDLSILYR 322 (446)
Q Consensus 244 ~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~-P~~~~a~~~ 322 (446)
+.|++++|...++++.+.--+. ....+..+..+|.+. |+.++|+..|++.. +.. ..|...|..
T Consensus 661 k~G~~eeA~~l~~eM~k~G~~p----d~~tynsLI~ay~k~-----------G~~eeA~~lf~eM~-~~g~~PdvvtyN~ 724 (1060)
T PLN03218 661 HAGDLDKAFEILQDARKQGIKL----GTVSYSSLMGACSNA-----------KNWKKALELYEDIK-SIKLRPTVSTMNA 724 (1060)
T ss_pred hCCCHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHhC-----------CCHHHHHHHHHHHH-HcCCCCCHHHHHH
Confidence 5789999999999998842211 145677777777654 57899999999987 542 346788999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHh--hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhc
Q 013299 323 LSLEYAEQRKLNAAHYYAKMLLK--LEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQT 382 (446)
Q Consensus 323 lg~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 382 (446)
+...|.+.|++++|++.|++... +.|+ ...|..+-..+...|++++|..++.++++..
T Consensus 725 LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd--~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~G 784 (1060)
T PLN03218 725 LITALCEGNQLPKALEVLSEMKRLGLCPN--TITYSILLVASERKDDADVGLDLLSQAKEDG 784 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 99999999999999999998865 4576 3778888899999999999999999999754
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.2e-14 Score=129.26 Aligned_cols=232 Identities=16% Similarity=0.127 Sum_probs=182.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChH-----HHHHHHH
Q 013299 165 DHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLP-----ALLIASK 239 (446)
Q Consensus 165 ~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~-----a~~~~~~ 239 (446)
+..|.-+.-.++.++|+..|-..++.+|...++++.||.++.+.|..+.|+.+-+..+ ..|+-+. +...+|.
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~---~spdlT~~qr~lAl~qL~~ 115 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLL---ESPDLTFEQRLLALQQLGR 115 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHh---cCCCCchHHHHHHHHHHHH
Confidence 3456666677888889999988999999999999999999999999999998888877 4676543 3444555
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHH-
Q 013299 240 ICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLS- 318 (446)
Q Consensus 240 ~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~- 318 (446)
-+ ...|-+|.|...|...++ .+. ....+.-.|-.+|... ..+++|++.-++.+ ++.|++..
T Consensus 116 Dy-m~aGl~DRAE~~f~~L~d-e~e----fa~~AlqqLl~IYQ~t-----------reW~KAId~A~~L~-k~~~q~~~~ 177 (389)
T COG2956 116 DY-MAAGLLDRAEDIFNQLVD-EGE----FAEGALQQLLNIYQAT-----------REWEKAIDVAERLV-KLGGQTYRV 177 (389)
T ss_pred HH-HHhhhhhHHHHHHHHHhc-chh----hhHHHHHHHHHHHHHh-----------hHHHHHHHHHHHHH-HcCCccchh
Confidence 53 346888888888887776 232 2345677777777775 35788999888888 88887643
Q ss_pred ----HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCc-HHHHHH
Q 013299 319 ----ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQ-GELLRT 393 (446)
Q Consensus 319 ----a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~-~~~~~~ 393 (446)
.+.-|+..+....+.+.|+..+++|++.+|++ +.+-..+|.+.+..|+|+.|+..++.+++.+| +. +++.-.
T Consensus 178 eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~c-vRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~--~yl~evl~~ 254 (389)
T COG2956 178 EIAQFYCELAQQALASSDVDRARELLKKALQADKKC-VRASIILGRVELAKGDYQKAVEALERVLEQNP--EYLSEVLEM 254 (389)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccc-eehhhhhhHHHHhccchHHHHHHHHHHHHhCh--HHHHHHHHH
Confidence 45678888888888899999999999999988 58888889999999999999999999998888 54 667778
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHhh
Q 013299 394 KAKVQLVQGQLKGAVETYTHLLAALQV 420 (446)
Q Consensus 394 ~a~~~~~~g~~~eA~~~~~~~l~l~~~ 420 (446)
+..+|..+|+.++++..+++..+..++
T Consensus 255 L~~~Y~~lg~~~~~~~fL~~~~~~~~g 281 (389)
T COG2956 255 LYECYAQLGKPAEGLNFLRRAMETNTG 281 (389)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence 888888999999888888888777665
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.6e-13 Score=147.78 Aligned_cols=317 Identities=9% Similarity=-0.023 Sum_probs=221.8
Q ss_pred HHHhHHHHHHhCChHHHHHHHHHHhCCCCCCChHHHHHHHHH--------HHHHH----hhhcCCCCCCccc--cccCcc
Q 013299 66 VELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKE--------FAIFL----LYCGGETCPPNLR--SQMGSS 131 (446)
Q Consensus 66 ~~~l~~~~~~~g~~~eA~~~y~~al~~~~~~~~~~~~~l~~~--------~a~~l----l~~~~~~~~~~~~--~~~~~~ 131 (446)
+..+...|.+.|++++|+..|++.++....+++.....+... .+..+ ...+. .++.. ..+...
T Consensus 192 ~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~---~~d~~~~n~Li~~ 268 (697)
T PLN03081 192 WGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGV---VGDTFVSCALIDM 268 (697)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCC---CccceeHHHHHHH
Confidence 334446778889999999999998876322232211111000 00000 01111 11111 233456
Q ss_pred ccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCC-CCcHHHHHHHHHHHHHCCC
Q 013299 132 FVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGI-INRKERYHILALCYYGAGE 210 (446)
Q Consensus 132 ~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~ 210 (446)
|...|++++|..++ + ...+.+...|+.+...|.+.|++++|++.|++..... .-+..++..+..++.+.|+
T Consensus 269 y~k~g~~~~A~~vf-----~---~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~ 340 (697)
T PLN03081 269 YSKCGDIEDARCVF-----D---GMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLAL 340 (697)
T ss_pred HHHCCCHHHHHHHH-----H---hCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence 77888888888775 2 2234577888889999999999999999998875432 2245678888888899999
Q ss_pred hHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhc
Q 013299 211 DLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAIT 290 (446)
Q Consensus 211 ~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~ 290 (446)
+++|...+...++....| +...+..+...+ .+.|+.++|...|++..+ ++ ...|..+..+|.+.
T Consensus 341 ~~~a~~i~~~m~~~g~~~-d~~~~~~Li~~y-~k~G~~~~A~~vf~~m~~---~d-----~~t~n~lI~~y~~~------ 404 (697)
T PLN03081 341 LEHAKQAHAGLIRTGFPL-DIVANTALVDLY-SKWGRMEDARNVFDRMPR---KN-----LISWNALIAGYGNH------ 404 (697)
T ss_pred hHHHHHHHHHHHHhCCCC-CeeehHHHHHHH-HHCCCHHHHHHHHHhCCC---CC-----eeeHHHHHHHHHHc------
Confidence 999999998888422233 444455455443 447889999988887653 22 34567777777543
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hcCCCCHHHHHHHHHHHHHcc
Q 013299 291 DFDRATRQAKALQALVSAARSTN-MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLK---LEGGSNLKGWLLMARILSAQK 366 (446)
Q Consensus 291 ~~~~~~~~~eAl~~~~~al~~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~---l~P~~~~~~~~~la~~~~~~g 366 (446)
|+.++|++.|++.. +.. ..|..++..+-..+...|++++|..+|+...+ +.|+ ...|..+..++.+.|
T Consensus 405 -----G~~~~A~~lf~~M~-~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~--~~~y~~li~~l~r~G 476 (697)
T PLN03081 405 -----GRGTKAVEMFERMI-AEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPR--AMHYACMIELLGREG 476 (697)
T ss_pred -----CCHHHHHHHHHHHH-HhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC--ccchHhHHHHHHhcC
Confidence 57899999999988 643 33466777888888999999999999999875 3465 268888999999999
Q ss_pred CHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhh
Q 013299 367 RYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQ 421 (446)
Q Consensus 367 ~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~ 421 (446)
++++|.+.+++. ...| +...|..+...+...|+++.|...+++++++.|.+
T Consensus 477 ~~~eA~~~~~~~-~~~p---~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~ 527 (697)
T PLN03081 477 LLDEAYAMIRRA-PFKP---TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEK 527 (697)
T ss_pred CHHHHHHHHHHC-CCCC---CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCC
Confidence 999999998765 2445 56778889999999999999999999998887653
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.65 E-value=9.8e-15 Score=138.41 Aligned_cols=176 Identities=18% Similarity=0.086 Sum_probs=119.6
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhh
Q 013299 199 HILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLG 278 (446)
Q Consensus 199 ~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg 278 (446)
+.-+.|+.-.|++++|...--..+ +++|.+..+++..+.+++ -.++.+.|+.+|++++...|.+.. ...+.+..-
T Consensus 173 ~lka~cl~~~~~~~~a~~ea~~il--kld~~n~~al~vrg~~~y-y~~~~~ka~~hf~qal~ldpdh~~--sk~~~~~~k 247 (486)
T KOG0550|consen 173 LLKAECLAFLGDYDEAQSEAIDIL--KLDATNAEALYVRGLCLY-YNDNADKAINHFQQALRLDPDHQK--SKSASMMPK 247 (486)
T ss_pred HhhhhhhhhcccchhHHHHHHHHH--hcccchhHHHHhcccccc-cccchHHHHHHHhhhhccChhhhh--HHhHhhhHH
Confidence 334555666666666666666666 566666665554443322 345555666666666663222211 001111111
Q ss_pred chhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHH
Q 013299 279 ISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDL----SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKG 354 (446)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~----~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~ 354 (446)
.+... +....+..+.|.+.+|.++|..+| .++|+|. ..++++|.+....|+..+|+..++.|+.|||.. ..+
T Consensus 248 ~le~~--k~~gN~~fk~G~y~~A~E~Yteal-~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~sy-ika 323 (486)
T KOG0550|consen 248 KLEVK--KERGNDAFKNGNYRKAYECYTEAL-NIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSY-IKA 323 (486)
T ss_pred HHHHH--HhhhhhHhhccchhHHHHHHHHhh-cCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHH-HHH
Confidence 11000 000011234678999999999999 9999974 467899999999999999999999999999999 699
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013299 355 WLLMARILSAQKRYEDAETILNAALDQTG 383 (446)
Q Consensus 355 ~~~la~~~~~~g~~~eA~~~~~~al~~~p 383 (446)
++..|.++..++++++|+..|++|++...
T Consensus 324 ll~ra~c~l~le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 324 LLRRANCHLALEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999998866
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.7e-13 Score=146.23 Aligned_cols=117 Identities=9% Similarity=0.025 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHH
Q 013299 295 ATRQAKALQALVSAARSTNM--RDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAE 372 (446)
Q Consensus 295 ~~~~~eAl~~~~~al~~~~P--~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~ 372 (446)
.|..++|...|+... +..+ .+...+..+..++.+.|++++|...+++. .+.|+ ...|..|-..+...|+.+.|.
T Consensus 602 ~g~v~ea~~~f~~M~-~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd--~~~~~aLl~ac~~~~~~e~~e 677 (857)
T PLN03077 602 SGMVTQGLEYFHSME-EKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD--PAVWGALLNACRIHRHVELGE 677 (857)
T ss_pred cChHHHHHHHHHHHH-HHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC--HHHHHHHHHHHHHcCChHHHH
Confidence 467889999998887 5543 24567888889999999999999998885 46777 378888877888889999999
Q ss_pred HHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 013299 373 TILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAA 417 (446)
Q Consensus 373 ~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l 417 (446)
...++++++.| ++...+..++.+|...|++++|.+..+...+.
T Consensus 678 ~~a~~l~~l~p--~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~ 720 (857)
T PLN03077 678 LAAQHIFELDP--NSVGYYILLCNLYADAGKWDEVARVRKTMREN 720 (857)
T ss_pred HHHHHHHhhCC--CCcchHHHHHHHHHHCCChHHHHHHHHHHHHc
Confidence 99999999999 88888999999999999999999888766543
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.4e-14 Score=130.73 Aligned_cols=127 Identities=11% Similarity=0.030 Sum_probs=106.2
Q ss_pred cCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHH
Q 013299 174 AGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGAT 253 (446)
Q Consensus 174 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~ 253 (446)
.++.++++..+++++..+|+++++|+.||.++...|++++|+..|++++ +++|+++.++..++.+.+...|+.
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al--~l~P~~~~~~~~lA~aL~~~~g~~----- 124 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQAL--QLRGENAELYAALATVLYYQAGQH----- 124 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHhcCCC-----
Confidence 5667888888999999999999999999999999999999999999999 899999888877665433222210
Q ss_pred HHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 013299 254 FASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKL 333 (446)
Q Consensus 254 ~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~ 333 (446)
..++|...+++++ +++|+++.+++++|..+.+.|++
T Consensus 125 -------------------------------------------~~~~A~~~l~~al-~~dP~~~~al~~LA~~~~~~g~~ 160 (198)
T PRK10370 125 -------------------------------------------MTPQTREMIDKAL-ALDANEVTALMLLASDAFMQADY 160 (198)
T ss_pred -------------------------------------------CcHHHHHHHHHHH-HhCCCChhHHHHHHHHHHHcCCH
Confidence 1368888999999 99999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCC
Q 013299 334 NAAHYYAKMLLKLEGGSN 351 (446)
Q Consensus 334 ~~A~~~~~~al~l~P~~~ 351 (446)
++|+.+++++++++|.+.
T Consensus 161 ~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 161 AQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHHHHHHHHHhhCCCCc
Confidence 999999999999988763
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.9e-14 Score=121.86 Aligned_cols=117 Identities=16% Similarity=0.185 Sum_probs=111.4
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhc
Q 013299 303 QALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQT 382 (446)
Q Consensus 303 ~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 382 (446)
+.|++++ +.+|++..+.+.+|..+...|++++|+..+++++.++|+++ .+|..+|.++..+|++++|+.+++++++.+
T Consensus 4 ~~~~~~l-~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 4 ATLKDLL-GLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNS-RYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hhHHHHH-cCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4688999 99999999999999999999999999999999999999994 999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhh
Q 013299 383 GKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTK 423 (446)
Q Consensus 383 p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~ 423 (446)
| +++..++++|.++...|++++|+..|++++++.|+...
T Consensus 82 p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 82 P--DDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred C--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 9 89999999999999999999999999999999875543
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.5e-12 Score=139.05 Aligned_cols=192 Identities=9% Similarity=-0.019 Sum_probs=95.3
Q ss_pred HHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHhCCC
Q 013299 14 FLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRALLPC 93 (446)
Q Consensus 14 ~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~al~~~ 93 (446)
...-.+|.+.|++++|...|.+..+ |+. ..+..+-..|.+.|++++|+..|++.....
T Consensus 226 n~Li~~y~k~g~~~~A~~lf~~m~~----------~d~------------~s~n~li~~~~~~g~~~eAl~lf~~M~~~g 283 (857)
T PLN03077 226 NALITMYVKCGDVVSARLVFDRMPR----------RDC------------ISWNAMISGYFENGECLEGLELFFTMRELS 283 (857)
T ss_pred hHHHHHHhcCCCHHHHHHHHhcCCC----------CCc------------chhHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 3344567777888888777766421 211 122333356778888888888888887762
Q ss_pred CCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHh
Q 013299 94 WNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSI 173 (446)
Q Consensus 94 ~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~ 173 (446)
..|+... + ..+ + ..+...++.+.|..++... .-...+.|..++..+...|.+
T Consensus 284 --~~Pd~~t-y-~~l----l----------------~a~~~~g~~~~a~~l~~~~----~~~g~~~d~~~~n~Li~~y~k 335 (857)
T PLN03077 284 --VDPDLMT-I-TSV----I----------------SACELLGDERLGREMHGYV----VKTGFAVDVSVCNSLIQMYLS 335 (857)
T ss_pred --CCCChhH-H-HHH----H----------------HHHHhcCChHHHHHHHHHH----HHhCCccchHHHHHHHHHHHh
Confidence 2332211 0 000 0 1112234444444433111 111123345555566666666
Q ss_pred cCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHH
Q 013299 174 AGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGAT 253 (446)
Q Consensus 174 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~ 253 (446)
.|++++|.+.|++... .+...|..+...|.+.|++++|+..|++..+....|+.......+. . +...|+.++|..
T Consensus 336 ~g~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~-a-~~~~g~~~~a~~ 410 (857)
T PLN03077 336 LGSWGEAEKVFSRMET---KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLS-A-CACLGDLDVGVK 410 (857)
T ss_pred cCCHHHHHHHHhhCCC---CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHH-H-HhccchHHHHHH
Confidence 6666666666665432 2344566666666666666666666665442234455433222221 1 123445555555
Q ss_pred HHHHHHH
Q 013299 254 FASRALE 260 (446)
Q Consensus 254 ~~~~al~ 260 (446)
.+..+++
T Consensus 411 l~~~~~~ 417 (857)
T PLN03077 411 LHELAER 417 (857)
T ss_pred HHHHHHH
Confidence 5555544
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2e-13 Score=123.18 Aligned_cols=178 Identities=19% Similarity=0.075 Sum_probs=115.5
Q ss_pred HHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 013299 180 LATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRAL 259 (446)
Q Consensus 180 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al 259 (446)
+...+-+....+|++.++ .+++..++..|+-+.+.....+++ -.+|++..++...+...+. .|++.+|+..++++.
T Consensus 52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~--~~~~~d~~ll~~~gk~~~~-~g~~~~A~~~~rkA~ 127 (257)
T COG5010 52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSA--IAYPKDRELLAAQGKNQIR-NGNFGEAVSVLRKAA 127 (257)
T ss_pred HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhh--ccCcccHHHHHHHHHHHHH-hcchHHHHHHHHHHh
Confidence 455555556666777777 777777777777777777777766 5666666655433433322 355555555555555
Q ss_pred HHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 013299 260 ECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYY 339 (446)
Q Consensus 260 ~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~ 339 (446)
...|++ +.+|+.+|.+|.+ .|++++|...|.+++ ++.|+++.+..|+|..+.-.|+++.|..+
T Consensus 128 ~l~p~d-----~~~~~~lgaaldq-----------~Gr~~~Ar~ay~qAl-~L~~~~p~~~nNlgms~~L~gd~~~A~~l 190 (257)
T COG5010 128 RLAPTD-----WEAWNLLGAALDQ-----------LGRFDEARRAYRQAL-ELAPNEPSIANNLGMSLLLRGDLEDAETL 190 (257)
T ss_pred ccCCCC-----hhhhhHHHHHHHH-----------ccChhHHHHHHHHHH-HhccCCchhhhhHHHHHHHcCCHHHHHHH
Confidence 533332 4555556666643 345677777777777 77777777777777777777777777777
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 013299 340 AKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAAL 379 (446)
Q Consensus 340 ~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al 379 (446)
+.++...-+.+ ..+..+++.+...+|++++|.++..+-+
T Consensus 191 ll~a~l~~~ad-~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 191 LLPAYLSPAAD-SRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred HHHHHhCCCCc-hHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 77776666655 3777777777777777777776665443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.7e-13 Score=138.26 Aligned_cols=222 Identities=17% Similarity=0.141 Sum_probs=192.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHh
Q 013299 163 ILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICG 242 (446)
Q Consensus 163 ~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~ 242 (446)
.--.++.++...|=..+|+..|++ .+.|-....||...|+-..|..+..+-+ + +|.++..|..+|.+..
T Consensus 400 ~q~~laell~slGitksAl~I~Er--------lemw~~vi~CY~~lg~~~kaeei~~q~l--e-k~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFER--------LEMWDPVILCYLLLGQHGKAEEINRQEL--E-KDPDPRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHh--------HHHHHHHHHHHHHhcccchHHHHHHHHh--c-CCCcchhHHHhhhhcc
Confidence 344789999999999999999985 5778889999999999999999999999 6 6667777877777632
Q ss_pred cCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHH
Q 013299 243 EYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYR 322 (446)
Q Consensus 243 ~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~ 322 (446)
. -.+|++|.+..+. ....|+..+|..... .+++.++..+++..+ +++|-....||.
T Consensus 469 d--------~s~yEkawElsn~----~sarA~r~~~~~~~~-----------~~~fs~~~~hle~sl-~~nplq~~~wf~ 524 (777)
T KOG1128|consen 469 D--------PSLYEKAWELSNY----ISARAQRSLALLILS-----------NKDFSEADKHLERSL-EINPLQLGTWFG 524 (777)
T ss_pred C--------hHHHHHHHHHhhh----hhHHHHHhhcccccc-----------chhHHHHHHHHHHHh-hcCccchhHHHh
Confidence 2 2577888875332 235667777765433 357999999999999 999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhC
Q 013299 323 LSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQG 402 (446)
Q Consensus 323 lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g 402 (446)
+|.+..+.++++.|..+|.+++.++|++ .++|+|++..|...|+-.+|...+.+|++-+- +++.+|.|.-.+....|
T Consensus 525 ~G~~ALqlek~q~av~aF~rcvtL~Pd~-~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~--~~w~iWENymlvsvdvg 601 (777)
T KOG1128|consen 525 LGCAALQLEKEQAAVKAFHRCVTLEPDN-AEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY--QHWQIWENYMLVSVDVG 601 (777)
T ss_pred ccHHHHHHhhhHHHHHHHHHHhhcCCCc-hhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC--CCCeeeechhhhhhhcc
Confidence 9999999999999999999999999999 59999999999999999999999999999886 88999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhhhh
Q 013299 403 QLKGAVETYTHLLAALQVQT 422 (446)
Q Consensus 403 ~~~eA~~~~~~~l~l~~~~~ 422 (446)
.+++|++.|.+.+++.++..
T Consensus 602 e~eda~~A~~rll~~~~~~~ 621 (777)
T KOG1128|consen 602 EFEDAIKAYHRLLDLRKKYK 621 (777)
T ss_pred cHHHHHHHHHHHHHhhhhcc
Confidence 99999999999999987643
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.9e-13 Score=143.97 Aligned_cols=148 Identities=13% Similarity=0.059 Sum_probs=106.3
Q ss_pred HHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 013299 181 ATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALE 260 (446)
Q Consensus 181 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~ 260 (446)
+.........-|++++++++||.+..+.|++++|+..++.++ .+.|++..++...+.++.+ .
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~--~~~Pd~~~a~~~~a~~L~~-~--------------- 133 (694)
T PRK15179 72 LPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIH--QRFPDSSEAFILMLRGVKR-Q--------------- 133 (694)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHH--hhCCCcHHHHHHHHHHHHH-h---------------
Confidence 333333444567888899999999999999999999999999 8899988887766655332 2
Q ss_pred HcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 013299 261 CLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYA 340 (446)
Q Consensus 261 ~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~ 340 (446)
+++++|+..+++++ ..+|+++.+++.+|.++.+.|++++|+..|
T Consensus 134 -----------------------------------~~~eeA~~~~~~~l-~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y 177 (694)
T PRK15179 134 -----------------------------------QGIEAGRAEIELYF-SGGSSSAREILLEAKSWDEIGQSEQADACF 177 (694)
T ss_pred -----------------------------------ccHHHHHHHHHHHh-hcCCCCHHHHHHHHHHHHHhcchHHHHHHH
Confidence 34566666666777 677777777777777777777777777777
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013299 341 KMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTG 383 (446)
Q Consensus 341 ~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 383 (446)
+++++.+|++ ..+|..+|.++...|+.++|...|++|++...
T Consensus 178 ~~~~~~~p~~-~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~ 219 (694)
T PRK15179 178 ERLSRQHPEF-ENGYVGWAQSLTRRGALWRARDVLQAGLDAIG 219 (694)
T ss_pred HHHHhcCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC
Confidence 7777766766 37777777777777777777777777776654
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.4e-13 Score=143.28 Aligned_cols=134 Identities=16% Similarity=0.066 Sum_probs=126.8
Q ss_pred hHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Q 013299 271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS 350 (446)
Q Consensus 271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~ 350 (446)
..++.+||.+.... |++++|+..++.++ ++.|++..++.+++.++.+.+++++|+..+++++..+|++
T Consensus 86 ~~~~~~La~i~~~~-----------g~~~ea~~~l~~~~-~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~ 153 (694)
T PRK15179 86 ELFQVLVARALEAA-----------HRSDEGLAVWRGIH-QRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSS 153 (694)
T ss_pred HHHHHHHHHHHHHc-----------CCcHHHHHHHHHHH-hhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCC
Confidence 57888888887554 67899999999999 9999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Q 013299 351 NLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQ 419 (446)
Q Consensus 351 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~ 419 (446)
..+++.+|.++..+|+|++|+..|++++..+| ++..++..+|.++...|+.++|...|+++++..-
T Consensus 154 -~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p--~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~ 219 (694)
T PRK15179 154 -AREILLEAKSWDEIGQSEQADACFERLSRQHP--EFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG 219 (694)
T ss_pred -HHHHHHHHHHHHHhcchHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC
Confidence 59999999999999999999999999999899 8999999999999999999999999999998863
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.6e-11 Score=122.60 Aligned_cols=337 Identities=18% Similarity=0.103 Sum_probs=234.5
Q ss_pred HHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHhC
Q 013299 12 AIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRALL 91 (446)
Q Consensus 12 ~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~al~ 91 (446)
++|.+++-....++|......++.+|+. .|++. +.+...|..+...|+.++|....+.+++
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k--------~~eHg-----------eslAmkGL~L~~lg~~~ea~~~vr~glr 69 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKK--------FPEHG-----------ESLAMKGLTLNCLGKKEEAYELVRLGLR 69 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHh--------CCccc-----------hhHHhccchhhcccchHHHHHHHHHHhc
Confidence 5778888888999999999999999985 45432 3455667888899999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Q 013299 92 PCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAF 171 (446)
Q Consensus 92 ~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l 171 (446)
. |+.+.- ...-+|.. +....+|++||.++ ..++...|+|..+|..++...
T Consensus 70 ~----d~~S~v-CwHv~gl~--------------------~R~dK~Y~eaiKcy-----~nAl~~~~dN~qilrDlslLQ 119 (700)
T KOG1156|consen 70 N----DLKSHV-CWHVLGLL--------------------QRSDKKYDEAIKCY-----RNALKIEKDNLQILRDLSLLQ 119 (700)
T ss_pred c----Ccccch-hHHHHHHH--------------------HhhhhhHHHHHHHH-----HHHHhcCCCcHHHHHHHHHHH
Confidence 7 664321 23333432 23345799999986 667888999999999999999
Q ss_pred HhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCC--CCCh-----HHHHHHHHHHhcC
Q 013299 172 SIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSED--PKCL-----PALLIASKICGEY 244 (446)
Q Consensus 172 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~--P~~~-----~a~~~~~~~~~~~ 244 (446)
.++++++-....=.+.++..|..-..|+.++.++.-.|.+..|..+++.-.+ ..+ |+.. ...+....+.. .
T Consensus 120 ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~-t~~~~~s~~~~e~se~~Ly~n~i~~-E 197 (700)
T KOG1156|consen 120 IQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEK-TQNTSPSKEDYEHSELLLYQNQILI-E 197 (700)
T ss_pred HHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhccCCCHHHHHHHHHHHHHHHHHH-H
Confidence 9999999999999999999999999999999999999999999988887773 222 3321 22333333322 2
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 013299 245 PDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLS 324 (446)
Q Consensus 245 ~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg 324 (446)
.|..++|.+.+..--... ...-......+..+ .+++++++|+..|+..+ ..+|+|...+..+=
T Consensus 198 ~g~~q~ale~L~~~e~~i-----~Dkla~~e~ka~l~-----------~kl~~lEeA~~~y~~Ll-~rnPdn~~Yy~~l~ 260 (700)
T KOG1156|consen 198 AGSLQKALEHLLDNEKQI-----VDKLAFEETKADLL-----------MKLGQLEEAVKVYRRLL-ERNPDNLDYYEGLE 260 (700)
T ss_pred cccHHHHHHHHHhhhhHH-----HHHHHHhhhHHHHH-----------HHHhhHHhHHHHHHHHH-hhCchhHHHHHHHH
Confidence 344444444433211100 00000001112222 45688999999999999 99999998776554
Q ss_pred HHHHHcCCHHHHH-HHHH--------------------------------------------------------------
Q 013299 325 LEYAEQRKLNAAH-YYAK-------------------------------------------------------------- 341 (446)
Q Consensus 325 ~~~~~~~~~~~A~-~~~~-------------------------------------------------------------- 341 (446)
.++..-.+--+++ ..|.
T Consensus 261 ~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le 340 (700)
T KOG1156|consen 261 KALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLE 340 (700)
T ss_pred HHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHH
Confidence 4442111111111 1111
Q ss_pred -------HHHhhc------------CCCCHHHHH--HHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHH
Q 013299 342 -------MLLKLE------------GGSNLKGWL--LMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLV 400 (446)
Q Consensus 342 -------~al~l~------------P~~~~~~~~--~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~ 400 (446)
..+.-. |-. .-+|. .++.-+-..|+++.|..+++.|+.-.| ...+.+..+|.++.-
T Consensus 341 ~Lvt~y~~~L~~~~~f~~~D~~~~E~Pt-tllWt~y~laqh~D~~g~~~~A~~yId~AIdHTP--TliEly~~KaRI~kH 417 (700)
T KOG1156|consen 341 KLVTSYQHSLSGTGMFNFLDDGKQEPPT-TLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTP--TLIELYLVKARIFKH 417 (700)
T ss_pred HHHHHHHhhcccccCCCcccccccCCch-HHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCc--hHHHHHHHHHHHHHh
Confidence 111100 111 12333 456667789999999999999999999 899999999999999
Q ss_pred hCCHHHHHHHHHHHHHHHh
Q 013299 401 QGQLKGAVETYTHLLAALQ 419 (446)
Q Consensus 401 ~g~~~eA~~~~~~~l~l~~ 419 (446)
.|.+++|...+.++-+++.
T Consensus 418 ~G~l~eAa~~l~ea~elD~ 436 (700)
T KOG1156|consen 418 AGLLDEAAAWLDEAQELDT 436 (700)
T ss_pred cCChHHHHHHHHHHHhccc
Confidence 9999999999999988863
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.2e-13 Score=141.79 Aligned_cols=214 Identities=13% Similarity=0.035 Sum_probs=174.4
Q ss_pred hhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHH
Q 013299 154 LKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPA 233 (446)
Q Consensus 154 l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a 233 (446)
....|.+.+++..|..++...+++++|++.++.+++.+|+...+|+.+|.++.+.+++.+|... +++ ...|++..
T Consensus 24 ~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l--~~~~~~~~- 98 (906)
T PRK14720 24 NNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLI--DSFSQNLK- 98 (906)
T ss_pred ccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhh--hhcccccc-
Confidence 3556899999999999999999999999999999999999999999999999999998888877 777 44444321
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhC
Q 013299 234 LLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTN 313 (446)
Q Consensus 234 ~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~ 313 (446)
+ .++.++-..+...+.+ ..+++.+|.||.+. |+.++|...|++++ +++
T Consensus 99 --------------~-~~ve~~~~~i~~~~~~-----k~Al~~LA~~Ydk~-----------g~~~ka~~~yer~L-~~D 146 (906)
T PRK14720 99 --------------W-AIVEHICDKILLYGEN-----KLALRTLAEAYAKL-----------NENKKLKGVWERLV-KAD 146 (906)
T ss_pred --------------h-hHHHHHHHHHHhhhhh-----hHHHHHHHHHHHHc-----------CChHHHHHHHHHHH-hcC
Confidence 1 2333333333323332 46899999999664 57899999999999 999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHH-
Q 013299 314 MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLR- 392 (446)
Q Consensus 314 P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~- 392 (446)
|+|+.+++++|..|... ++++|+.++.+|+.. +...++|.++..++.+.+..+| ++.+.++
T Consensus 147 ~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~--~d~d~f~~ 208 (906)
T PRK14720 147 RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNS--DDFDFFLR 208 (906)
T ss_pred cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCc--ccchHHHH
Confidence 99999999999999999 999999999999886 4455789999999999999999 6655422
Q ss_pred -------HHH------------HHHHHhCCHHHHHHHHHHHHHHHhhhh
Q 013299 393 -------TKA------------KVQLVQGQLKGAVETYTHLLAALQVQT 422 (446)
Q Consensus 393 -------~~a------------~~~~~~g~~~eA~~~~~~~l~l~~~~~ 422 (446)
.++ ..+.+.+++++++..++.+|++.|++.
T Consensus 209 i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~ 257 (906)
T PRK14720 209 IERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNN 257 (906)
T ss_pred HHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcch
Confidence 223 566777899999999999999987643
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1e-12 Score=118.72 Aligned_cols=171 Identities=20% Similarity=0.091 Sum_probs=154.2
Q ss_pred HHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCCh
Q 013299 152 VALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCL 231 (446)
Q Consensus 152 ~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~ 231 (446)
....++|++.++ ..+...+...|+-+.+..+..++...+|.+.+....+|....+.|++.+|+..++++. .++|++.
T Consensus 58 ~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~--~l~p~d~ 134 (257)
T COG5010 58 AAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAA--RLAPTDW 134 (257)
T ss_pred HHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHh--ccCCCCh
Confidence 345778999999 9999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHh
Q 013299 232 PALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARS 311 (446)
Q Consensus 232 ~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~ 311 (446)
.++..+|. ++.+.|++++|...|.++++..+.+ +.+..++|+.|.-. |+++.|...+..+. .
T Consensus 135 ~~~~~lga-aldq~Gr~~~Ar~ay~qAl~L~~~~-----p~~~nNlgms~~L~-----------gd~~~A~~lll~a~-l 196 (257)
T COG5010 135 EAWNLLGA-ALDQLGRFDEARRAYRQALELAPNE-----PSIANNLGMSLLLR-----------GDLEDAETLLLPAY-L 196 (257)
T ss_pred hhhhHHHH-HHHHccChhHHHHHHHHHHHhccCC-----chhhhhHHHHHHHc-----------CCHHHHHHHHHHHH-h
Confidence 99997765 4667899999999999999976554 46889999988654 67899999999999 8
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013299 312 TNMRDLSILYRLSLEYAEQRKLNAAHYYAKML 343 (446)
Q Consensus 312 ~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~a 343 (446)
.-+.|..+..||+.+...+|++++|.....+=
T Consensus 197 ~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 197 SPAADSRVRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred CCCCchHHHHHHHHHHhhcCChHHHHhhcccc
Confidence 88889999999999999999999999877654
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.4e-13 Score=115.02 Aligned_cols=106 Identities=16% Similarity=0.207 Sum_probs=102.8
Q ss_pred hhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHH
Q 013299 311 STN-MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGE 389 (446)
Q Consensus 311 ~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~ 389 (446)
.+. |++.+..|.+|..+...|++++|+..|+-.+.++|.+ ...|++||.++..+|+|.+|+..|.+|+.++| +++.
T Consensus 28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~-~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~--ddp~ 104 (157)
T PRK15363 28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWS-FDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI--DAPQ 104 (157)
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--CCch
Confidence 778 8999999999999999999999999999999999999 59999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Q 013299 390 LLRTKAKVQLVQGQLKGAVETYTHLLAALQ 419 (446)
Q Consensus 390 ~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~ 419 (446)
++++.|.++...|+.+.|.+.|+.++....
T Consensus 105 ~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 105 APWAAAECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999983
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.6e-12 Score=125.39 Aligned_cols=266 Identities=15% Similarity=0.033 Sum_probs=199.6
Q ss_pred cHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHH
Q 013299 137 NIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALN 216 (446)
Q Consensus 137 ~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~ 216 (446)
+|...+.+ .+.++++.|+.++..-..|..+...|+-++|....+.++..++.+.--|..+|.++....+|++|+.
T Consensus 22 QYkkgLK~-----~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 22 QYKKGLKL-----IKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHhHHHH-----HHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHH
Confidence 34445444 3778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHH
Q 013299 217 LLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRAT 296 (446)
Q Consensus 217 ~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~ 296 (446)
+|+.|+ .++|+|...+.-++-+ ..++++++.....-.+.++..|.. -..|+-.++++.- .|
T Consensus 97 cy~nAl--~~~~dN~qilrDlslL-Q~QmRd~~~~~~tr~~LLql~~~~-----ra~w~~~Avs~~L-----------~g 157 (700)
T KOG1156|consen 97 CYRNAL--KIEKDNLQILRDLSLL-QIQMRDYEGYLETRNQLLQLRPSQ-----RASWIGFAVAQHL-----------LG 157 (700)
T ss_pred HHHHHH--hcCCCcHHHHHHHHHH-HHHHHhhhhHHHHHHHHHHhhhhh-----HHHHHHHHHHHHH-----------HH
Confidence 999999 9999999988766543 445678877777777788854432 2344555554433 35
Q ss_pred HHHHHHHHHHHHHHhhC---CCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCH
Q 013299 297 RQAKALQALVSAARSTN---MRD-----LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRY 368 (446)
Q Consensus 297 ~~~eAl~~~~~al~~~~---P~~-----~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~ 368 (446)
.+..|+...+.-. ... |+. ..+......++.+.|.+++|++...+--.---+. .......|.+++.+|++
T Consensus 158 ~y~~A~~il~ef~-~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dk-la~~e~ka~l~~kl~~l 235 (700)
T KOG1156|consen 158 EYKMALEILEEFE-KTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDK-LAFEETKADLLMKLGQL 235 (700)
T ss_pred HHHHHHHHHHHHH-HhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHH-HHHhhhHHHHHHHHhhH
Confidence 6777777666555 333 332 2345666777888899999988775542222232 34566789999999999
Q ss_pred HHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhccCCcchhh
Q 013299 369 EDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYK 433 (446)
Q Consensus 369 ~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~~~~~~~~~~ 433 (446)
++|+..|...+..+| |+...+..+-.++- .+....+....+++...++++-.....+++.
T Consensus 236 EeA~~~y~~Ll~rnP--dn~~Yy~~l~~~lg---k~~d~~~~lk~ly~~ls~~y~r~e~p~Rlpl 295 (700)
T KOG1156|consen 236 EEAVKVYRRLLERNP--DNLDYYEGLEKALG---KIKDMLEALKALYAILSEKYPRHECPRRLPL 295 (700)
T ss_pred HhHHHHHHHHHhhCc--hhHHHHHHHHHHHH---HHhhhHHHHHHHHHHHhhcCcccccchhccH
Confidence 999999999999999 88776666555543 5666666666677776666666665555543
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.7e-11 Score=125.04 Aligned_cols=269 Identities=15% Similarity=0.030 Sum_probs=192.6
Q ss_pred cccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCC-
Q 013299 131 SFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAG- 209 (446)
Q Consensus 131 ~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g- 209 (446)
++...|++++|+..| +......++...++...|.++...|++++|...|+..|+.+|+|...|..|..++....
T Consensus 13 il~e~g~~~~AL~~L-----~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 13 ILEEAGDYEEALEHL-----EKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHCCCHHHHHHHH-----HhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcc
Confidence 345678999999987 33445568888999999999999999999999999999999999999999999984433
Q ss_pred ----ChHHHHHHHHHHhcCCCCCCChHHHHHH-------------------------------HHHHhcCCCCHHHHHHH
Q 013299 210 ----EDLVALNLLRTLLSGSEDPKCLPALLIA-------------------------------SKICGEYPDLAEEGATF 254 (446)
Q Consensus 210 ----~~~eA~~~~~~al~~~~~P~~~~a~~~~-------------------------------~~~~~~~~~~~~eA~~~ 254 (446)
..+.-...|++.. ...|....+...- ....+....+.+--...
T Consensus 88 ~~~~~~~~~~~~y~~l~--~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELA--EKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred cccccHHHHHHHHHHHH--HhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHH
Confidence 4566678888777 6667643322111 01111111111111111
Q ss_pred HHHHHHHcCC------------CcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHH
Q 013299 255 ASRALECLGD------------GCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYR 322 (446)
Q Consensus 255 ~~~al~~~~~------------~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~ 322 (446)
+...+..... .++.....+++.++..| ...|++++|+++.++|+ +..|..++.++.
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhy-----------d~~g~~~~Al~~Id~aI-~htPt~~ely~~ 233 (517)
T PF12569_consen 166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHY-----------DYLGDYEKALEYIDKAI-EHTPTLVELYMT 233 (517)
T ss_pred HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHH-----------HHhCCHHHHHHHHHHHH-hcCCCcHHHHHH
Confidence 1111111000 00011112334455555 34578999999999999 999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhc--CCCCc----HHHHHH--H
Q 013299 323 LSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQT--GKWEQ----GELLRT--K 394 (446)
Q Consensus 323 lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--p~~~~----~~~~~~--~ 394 (446)
.|.++...|++++|...++.|-.+|+.|. -.-...+-.+.+.|+.++|...+....+.+ |. .+ -.+||. -
T Consensus 234 KarilKh~G~~~~Aa~~~~~Ar~LD~~DR-yiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~-~~L~~mQc~Wf~~e~ 311 (517)
T PF12569_consen 234 KARILKHAGDLKEAAEAMDEARELDLADR-YINSKCAKYLLRAGRIEEAEKTASLFTREDVDPL-SNLNDMQCMWFETEC 311 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhCChhhH-HHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcc-cCHHHHHHHHHHHHH
Confidence 99999999999999999999999999983 555556777788999999999998887654 31 11 124554 4
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHHhh
Q 013299 395 AKVQLVQGQLKGAVETYTHLLAALQV 420 (446)
Q Consensus 395 a~~~~~~g~~~eA~~~~~~~l~l~~~ 420 (446)
|.++.++|++..|+..|..+.++..+
T Consensus 312 a~a~~r~~~~~~ALk~~~~v~k~f~~ 337 (517)
T PF12569_consen 312 AEAYLRQGDYGLALKRFHAVLKHFDD 337 (517)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999888654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.2e-13 Score=124.10 Aligned_cols=108 Identities=12% Similarity=0.086 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHH
Q 013299 294 RATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAET 373 (446)
Q Consensus 294 ~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~ 373 (446)
+.++|++|+..|.+|| +++|+|+-.|.+.+.+|.++|.++.|++.++.|+.+||.+ +.+|..||.++..+|+|++|+.
T Consensus 93 ~~~~Y~eAv~kY~~AI-~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~y-skay~RLG~A~~~~gk~~~A~~ 170 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAI-ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHY-SKAYGRLGLAYLALGKYEEAIE 170 (304)
T ss_pred HhhhHHHHHHHHHHHH-hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHH-HHHHHHHHHHHHccCcHHHHHH
Confidence 4578999999999999 9999999999999999999999999999999999999999 6999999999999999999999
Q ss_pred HHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHH
Q 013299 374 ILNAALDQTGKWEQGELLRTKAKVQLVQGQLK 405 (446)
Q Consensus 374 ~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~ 405 (446)
.|++||+++| ++...+-++..+..++++.+
T Consensus 171 aykKaLeldP--~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 171 AYKKALELDP--DNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHhhhccCC--CcHHHHHHHHHHHHHhcCCC
Confidence 9999999999 88888888888888877776
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.7e-11 Score=123.62 Aligned_cols=248 Identities=16% Similarity=0.103 Sum_probs=176.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHH
Q 013299 161 PSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKI 240 (446)
Q Consensus 161 ~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~ 240 (446)
+++......++...|++++|++.+++.-...+|.....-..|.++..+|++++|...|+..| ..||+|...+..+...
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li--~rNPdn~~Yy~~L~~~ 81 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELI--DRNPDNYDYYRGLEEA 81 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHCCCcHHHHHHHHHH
Confidence 45666777889999999999999999999999999999999999999999999999999999 8999999866554433
Q ss_pred Hhc----CCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchh-------Hhhhh--hhhchH----------HHHHH
Q 013299 241 CGE----YPDLAEEGATFASRALECLGDGCDQMESTANCLLGISL-------SAQSK--VAITDF----------DRATR 297 (446)
Q Consensus 241 ~~~----~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~-------~~~~~--~~~~~~----------~~~~~ 297 (446)
... ..+..+.-...|++.-+..|....+..--..+.-|.-+ ..... -.++-+ .+..-
T Consensus 82 ~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~ 161 (517)
T PF12569_consen 82 LGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAI 161 (517)
T ss_pred HhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHH
Confidence 211 12346677788887776554322110000000001111 11000 011110 11112
Q ss_pred HHHHHHHHHHHHHhhC------------CCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 013299 298 QAKALQALVSAARSTN------------MRDLS--ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILS 363 (446)
Q Consensus 298 ~~eAl~~~~~al~~~~------------P~~~~--a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~ 363 (446)
..+-+..|...+ +.. |.... +++.++..|...|++++|+.++++|+...|.. .+.++..|.|+.
T Consensus 162 i~~l~~~~~~~l-~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~-~ely~~KarilK 239 (517)
T PF12569_consen 162 IESLVEEYVNSL-ESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTL-VELYMTKARILK 239 (517)
T ss_pred HHHHHHHHHHhh-cccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHH
Confidence 223333333333 221 12222 45889999999999999999999999999999 599999999999
Q ss_pred HccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 013299 364 AQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHL 414 (446)
Q Consensus 364 ~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~ 414 (446)
..|++++|..+++.|-.+++ .+--+-..-+..+++.|++++|.+.+..-
T Consensus 240 h~G~~~~Aa~~~~~Ar~LD~--~DRyiNsK~aKy~LRa~~~e~A~~~~~~F 288 (517)
T PF12569_consen 240 HAGDLKEAAEAMDEARELDL--ADRYINSKCAKYLLRAGRIEEAEKTASLF 288 (517)
T ss_pred HCCCHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHCCCHHHHHHHHHhh
Confidence 99999999999999999999 66555566678889999999999887643
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.1e-12 Score=131.07 Aligned_cols=229 Identities=15% Similarity=0.055 Sum_probs=194.3
Q ss_pred hcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHH
Q 013299 173 IAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGA 252 (446)
Q Consensus 173 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~ 252 (446)
.+++...|...|-+++.++|....+|-.||..|...-+...|..+|++|- .+||.+..+.-..+..+- ....+++|.
T Consensus 470 ~rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAF--eLDatdaeaaaa~adtya-e~~~we~a~ 546 (1238)
T KOG1127|consen 470 MRKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAF--ELDATDAEAAAASADTYA-EESTWEEAF 546 (1238)
T ss_pred hhhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCchhhhhHHHHHHHhh-ccccHHHHH
Confidence 34568889999999999999999999999999999999999999999999 999999998877777654 467888998
Q ss_pred HHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 013299 253 TFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRK 332 (446)
Q Consensus 253 ~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~ 332 (446)
...-++-+..+ .......|..+|..|... +++-+|+..|+.++ +.+|+|.+.|..+|.+|...|+
T Consensus 547 ~I~l~~~qka~---a~~~k~nW~~rG~yyLea-----------~n~h~aV~~fQsAL-R~dPkD~n~W~gLGeAY~~sGr 611 (1238)
T KOG1127|consen 547 EICLRAAQKAP---AFACKENWVQRGPYYLEA-----------HNLHGAVCEFQSAL-RTDPKDYNLWLGLGEAYPESGR 611 (1238)
T ss_pred HHHHHHhhhch---HHHHHhhhhhccccccCc-----------cchhhHHHHHHHHh-cCCchhHHHHHHHHHHHHhcCc
Confidence 88666655332 223355677789888664 45789999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCC-----CcHHHHHHHHHHHHHhCCHHHH
Q 013299 333 LNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKW-----EQGELLRTKAKVQLVQGQLKGA 407 (446)
Q Consensus 333 ~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~-----~~~~~~~~~a~~~~~~g~~~eA 407 (446)
+..|++.|.+|..++|.+ .-+.+..+.+....|+|++|++.+...+....++ +-.+.+...+..+...|-...|
T Consensus 612 y~~AlKvF~kAs~LrP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~ka 690 (1238)
T KOG1127|consen 612 YSHALKVFTKASLLRPLS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKA 690 (1238)
T ss_pred eehHHHhhhhhHhcCcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhh
Confidence 999999999999999999 6999999999999999999999999888665421 3466777788888888888888
Q ss_pred HHHHHHHHHHHhh
Q 013299 408 VETYTHLLAALQV 420 (446)
Q Consensus 408 ~~~~~~~l~l~~~ 420 (446)
...+++.++....
T Consensus 691 vd~~eksie~f~~ 703 (1238)
T KOG1127|consen 691 VDFFEKSIESFIV 703 (1238)
T ss_pred hHHHHHHHHHHHH
Confidence 8888888776643
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.4e-12 Score=108.84 Aligned_cols=118 Identities=18% Similarity=0.084 Sum_probs=101.1
Q ss_pred HHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 013299 254 FASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKL 333 (446)
Q Consensus 254 ~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~ 333 (446)
.++++++. +|+. ..+.+.+|.++... +++++|+..|++++ ..+|+++.+++++|.++..+|++
T Consensus 5 ~~~~~l~~-~p~~----~~~~~~~a~~~~~~-----------~~~~~A~~~~~~~~-~~~p~~~~~~~~la~~~~~~~~~ 67 (135)
T TIGR02552 5 TLKDLLGL-DSEQ----LEQIYALAYNLYQQ-----------GRYDEALKLFQLLA-AYDPYNSRYWLGLAACCQMLKEY 67 (135)
T ss_pred hHHHHHcC-Chhh----HHHHHHHHHHHHHc-----------ccHHHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHHHHH
Confidence 45666663 3322 34566677766543 56899999999999 99999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHH
Q 013299 334 NAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELL 391 (446)
Q Consensus 334 ~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 391 (446)
++|+..+++++.++|+++ ..++.+|.++...|++++|+.+++++++.+| ++....
T Consensus 68 ~~A~~~~~~~~~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~ 122 (135)
T TIGR02552 68 EEAIDAYALAAALDPDDP-RPYFHAAECLLALGEPESALKALDLAIEICG--ENPEYS 122 (135)
T ss_pred HHHHHHHHHHHhcCCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc--ccchHH
Confidence 999999999999999995 9999999999999999999999999999999 665543
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=8.3e-10 Score=122.70 Aligned_cols=312 Identities=15% Similarity=0.028 Sum_probs=209.6
Q ss_pred hHHHHHHhCChHHHHHHHHHHhCCCCCC----ChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHH
Q 013299 69 LPELWKLADAPRETIMSYRRALLPCWNL----DAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILL 144 (446)
Q Consensus 69 l~~~~~~~g~~~eA~~~y~~al~~~~~~----~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~ 144 (446)
.+.++...|++++|...++.+....... ++.....+....+ .++...|++++|...
T Consensus 415 ~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a--------------------~~~~~~g~~~~A~~~ 474 (903)
T PRK04841 415 QAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRA--------------------QVAINDGDPEEAERL 474 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHH--------------------HHHHhCCCHHHHHHH
Confidence 3456678899999999999887641110 1111000111111 123457789999887
Q ss_pred HHHHHHHHHhhcCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCC------cHHHHHHHHHHHHHCCChHH
Q 013299 145 LMILLRKVALKRIEWD-----PSILDHLSFAFSIAGDLSSLATQIEELLPGIIN------RKERYHILALCYYGAGEDLV 213 (446)
Q Consensus 145 l~~~~~~~~l~~~p~~-----~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~e 213 (446)
+. .++...|.. ..+...+|.++...|++++|...+++++..... ...++.++|.++...|++++
T Consensus 475 ~~-----~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~ 549 (903)
T PRK04841 475 AE-----LALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQA 549 (903)
T ss_pred HH-----HHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHH
Confidence 63 333323332 235678899999999999999999999865322 12456788999999999999
Q ss_pred HHHHHHHHhcCCCC-----CC---ChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhh
Q 013299 214 ALNLLRTLLSGSED-----PK---CLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQS 285 (446)
Q Consensus 214 A~~~~~~al~~~~~-----P~---~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~ 285 (446)
|...+++++ ... +. ....+..++.+++. .|++++|...+++++.............++..+|.++..
T Consensus 550 A~~~~~~al--~~~~~~~~~~~~~~~~~~~~la~~~~~-~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~-- 624 (903)
T PRK04841 550 AYETQEKAF--QLIEEQHLEQLPMHEFLLRIRAQLLWE-WARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA-- 624 (903)
T ss_pred HHHHHHHHH--HHHHHhccccccHHHHHHHHHHHHHHH-hcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH--
Confidence 999999988 431 11 12223345555555 599999999999998864322122234455556666644
Q ss_pred hhhhchHHHHHHHHHHHHHHHHHHHhhCCCC---HHHHH---H-HHHHHHHcCCHHHHHHHHHHHHhhcCCCC---HHHH
Q 013299 286 KVAITDFDRATRQAKALQALVSAARSTNMRD---LSILY---R-LSLEYAEQRKLNAAHYYAKMLLKLEGGSN---LKGW 355 (446)
Q Consensus 286 ~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~---~~a~~---~-lg~~~~~~~~~~~A~~~~~~al~l~P~~~---~~~~ 355 (446)
.|++++|...++++. .+.+.. ..... . ....+...|+.+.|...+.......+..+ ...+
T Consensus 625 ---------~G~~~~A~~~l~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~ 694 (903)
T PRK04841 625 ---------RGDLDNARRYLNRLE-NLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQW 694 (903)
T ss_pred ---------cCCHHHHHHHHHHHH-HHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHH
Confidence 467899999999997 664332 11111 1 22444568999999999888765433321 0125
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhhcCC----CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Q 013299 356 LLMARILSAQKRYEDAETILNAALDQTGK----WEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQV 420 (446)
Q Consensus 356 ~~la~~~~~~g~~~eA~~~~~~al~~~p~----~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~ 420 (446)
..+|.++..+|++++|+..+++++..... .+...++..+|.++...|+.++|...+++++++...
T Consensus 695 ~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 695 RNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 68899999999999999999999976321 023457788999999999999999999999998754
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1e-12 Score=120.86 Aligned_cols=101 Identities=17% Similarity=0.090 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHH
Q 013299 319 ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQ 398 (446)
Q Consensus 319 a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~ 398 (446)
-+-.-|.-+++.++|++|+..|.+||.++|.++ ..|++.|.+|.++|.|+.|++.++.||.++| .++.+|-.+|.++
T Consensus 83 ~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nA-VyycNRAAAy~~Lg~~~~AVkDce~Al~iDp--~yskay~RLG~A~ 159 (304)
T KOG0553|consen 83 SLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNA-VYYCNRAAAYSKLGEYEDAVKDCESALSIDP--HYSKAYGRLGLAY 159 (304)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcc-hHHHHHHHHHHHhcchHHHHHHHHHHHhcCh--HHHHHHHHHHHHH
Confidence 344668888899999999999999999999995 9999999999999999999999999999999 8999999999999
Q ss_pred HHhCCHHHHHHHHHHHHHHHhhhh
Q 013299 399 LVQGQLKGAVETYTHLLAALQVQT 422 (446)
Q Consensus 399 ~~~g~~~eA~~~~~~~l~l~~~~~ 422 (446)
..+|++++|++.|+++|+|.|++.
T Consensus 160 ~~~gk~~~A~~aykKaLeldP~Ne 183 (304)
T KOG0553|consen 160 LALGKYEEAIEAYKKALELDPDNE 183 (304)
T ss_pred HccCcHHHHHHHHHhhhccCCCcH
Confidence 999999999999999999999876
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.2e-10 Score=102.87 Aligned_cols=180 Identities=17% Similarity=0.032 Sum_probs=151.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHH
Q 013299 159 WDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIAS 238 (446)
Q Consensus 159 ~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~ 238 (446)
+-=.++..+..+....|+.+-|..|+.+.-+.-|++...--..|..+-..|++++|++.|+..| .-||.|...+-...
T Consensus 50 e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL--~ddpt~~v~~KRKl 127 (289)
T KOG3060|consen 50 EIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLL--EDDPTDTVIRKRKL 127 (289)
T ss_pred hHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHh--ccCcchhHHHHHHH
Confidence 3334666888899999999999999999888889999999999999999999999999999999 89999988776544
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHH
Q 013299 239 KICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLS 318 (446)
Q Consensus 239 ~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~ 318 (446)
.+ ...+|+.-+||..+...++..+.| ..+|..++.+|... +++++|.-+|++.+ -+.|.++.
T Consensus 128 Ai-lka~GK~l~aIk~ln~YL~~F~~D-----~EAW~eLaeiY~~~-----------~~f~kA~fClEE~l-l~~P~n~l 189 (289)
T KOG3060|consen 128 AI-LKAQGKNLEAIKELNEYLDKFMND-----QEAWHELAEIYLSE-----------GDFEKAAFCLEELL-LIQPFNPL 189 (289)
T ss_pred HH-HHHcCCcHHHHHHHHHHHHHhcCc-----HHHHHHHHHHHHhH-----------hHHHHHHHHHHHHH-HcCCCcHH
Confidence 34 344677779999999999877665 57899999888765 56899999999999 99999999
Q ss_pred HHHHHHHHHHHcC---CHHHHHHHHHHHHhhcCCCCHHHHHHHH
Q 013299 319 ILYRLSLEYAEQR---KLNAAHYYAKMLLKLEGGSNLKGWLLMA 359 (446)
Q Consensus 319 a~~~lg~~~~~~~---~~~~A~~~~~~al~l~P~~~~~~~~~la 359 (446)
.+-.+|.+++-+| +++-|.++|.++++++|.+ ..+|+.+-
T Consensus 190 ~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~-~ral~GI~ 232 (289)
T KOG3060|consen 190 YFQRLAEVLYTQGGAENLELARKYYERALKLNPKN-LRALFGIY 232 (289)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHh-HHHHHHHH
Confidence 9999998888765 6777999999999999976 57776543
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.5e-11 Score=129.19 Aligned_cols=232 Identities=14% Similarity=0.122 Sum_probs=171.9
Q ss_pred cccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcH---------------
Q 013299 131 SFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRK--------------- 195 (446)
Q Consensus 131 ~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~--------------- 195 (446)
.+..++++++|+... +..++..|+...+|+.+|.++.+.+++..+... +++..-+.+.
T Consensus 40 ~~~~~~~~deai~i~-----~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~ 112 (906)
T PRK14720 40 AYKSENLTDEAKDIC-----EEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLY 112 (906)
T ss_pred HHHhcCCHHHHHHHH-----HHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhh
Confidence 344678899999875 567888999999999999999999998888766 7777766666
Q ss_pred ----HHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhh
Q 013299 196 ----ERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMES 271 (446)
Q Consensus 196 ----~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~ 271 (446)
.+++.||.||-.+|++++|...|+++| +.+|+|+.++.++|..+-.. +.++|+.++++|++..
T Consensus 113 ~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L--~~D~~n~~aLNn~AY~~ae~--dL~KA~~m~~KAV~~~--------- 179 (906)
T PRK14720 113 GENKLALRTLAEAYAKLNENKKLKGVWERLV--KADRDNPEIVKKLATSYEEE--DKEKAITYLKKAIYRF--------- 179 (906)
T ss_pred hhhhHHHHHHHHHHHHcCChHHHHHHHHHHH--hcCcccHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHH---------
Confidence 999999999999999999999999999 99999999999888776554 8999999999999841
Q ss_pred HHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHH--------H------------HHHHHcC
Q 013299 272 TANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRL--------S------------LEYAEQR 331 (446)
Q Consensus 272 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~l--------g------------~~~~~~~ 331 (446)
...+++.++.+...+.+ +.+|++.+.++.+ | ..|...+
T Consensus 180 ---------------------i~~kq~~~~~e~W~k~~-~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~ 237 (906)
T PRK14720 180 ---------------------IKKKQYVGIEEIWSKLV-HYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALE 237 (906)
T ss_pred ---------------------HhhhcchHHHHHHHHHH-hcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhh
Confidence 01246788999999999 9999998875433 3 3445556
Q ss_pred CHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHH
Q 013299 332 KLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETY 411 (446)
Q Consensus 332 ~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~ 411 (446)
++++++..++.++..+|++ ..+...++.+|. +.|.+ -..++..++... +-.....+..++..|
T Consensus 238 ~~~~~i~iLK~iL~~~~~n-~~a~~~l~~~y~--~kY~~-~~~~ee~l~~s~-------------l~~~~~~~~~~i~~f 300 (906)
T PRK14720 238 DWDEVIYILKKILEHDNKN-NKAREELIRFYK--EKYKD-HSLLEDYLKMSD-------------IGNNRKPVKDCIADF 300 (906)
T ss_pred hhhHHHHHHHHHHhcCCcc-hhhHHHHHHHHH--HHccC-cchHHHHHHHhc-------------cccCCccHHHHHHHH
Confidence 6777777777777777776 366666666654 44443 333333333321 111123455667777
Q ss_pred HHHHHHHhhh
Q 013299 412 THLLAALQVQ 421 (446)
Q Consensus 412 ~~~l~l~~~~ 421 (446)
++.+.+.+++
T Consensus 301 ek~i~f~~G~ 310 (906)
T PRK14720 301 EKNIVFDTGN 310 (906)
T ss_pred HHHeeecCCC
Confidence 7766666653
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.8e-11 Score=115.03 Aligned_cols=231 Identities=14% Similarity=-0.005 Sum_probs=140.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhCCCC------CCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHH
Q 013299 165 DHLSFAFSIAGDLSSLATQIEELLPGI------INRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIAS 238 (446)
Q Consensus 165 ~~lg~~l~~~~~~~~A~~~~~~al~~~------p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~ 238 (446)
-+||.++...|.|++|+.++.+-+.+. -....++|+||.+|...|+--. -..|.+..+...-.
T Consensus 99 gNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g-----------~~~pee~g~f~~ev 167 (639)
T KOG1130|consen 99 GNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTG-----------LEAPEEKGAFNAEV 167 (639)
T ss_pred ccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccC-----------CCChhhcccccHHH
Confidence 456666666666766666666655442 1234678888888888875311 12332221111000
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHcCC-CcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCC-
Q 013299 239 KICGEYPDLAEEGATFASRALECLGD-GCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRD- 316 (446)
Q Consensus 239 ~~~~~~~~~~~eA~~~~~~al~~~~~-~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~- 316 (446)
...++.|+++|..-++.... .+......++-+||..|.-. |+++.|+..-+.-+ ++....
T Consensus 168 ------~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlL-----------Gdf~~ai~~H~~RL-~ia~efG 229 (639)
T KOG1130|consen 168 ------TSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLL-----------GDFDQAIHFHKLRL-EIAQEFG 229 (639)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeee-----------ccHHHHHHHHHHHH-HHHHHhh
Confidence 01233444555444443211 00111234556666666543 45666666655555 443322
Q ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC----CC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC---
Q 013299 317 -----LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEG----GS-NLKGWLLMARILSAQKRYEDAETILNAALDQTG--- 383 (446)
Q Consensus 317 -----~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P----~~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p--- 383 (446)
-.++.+||.++.-.|+++.|+++|++++.+.- .. .+...+.||..|....+++.||.+..+=+.+..
T Consensus 230 DrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~ 309 (639)
T KOG1130|consen 230 DRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELE 309 (639)
T ss_pred hHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 24777889999999999999999888765532 11 125567888889889999999998887665432
Q ss_pred -CCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhh
Q 013299 384 -KWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKT 424 (446)
Q Consensus 384 -~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~ 424 (446)
.-....++|.+|..+...|..+.|+...++.+++..+--+.
T Consensus 310 DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~ 351 (639)
T KOG1130|consen 310 DRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDT 351 (639)
T ss_pred HhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCc
Confidence 00346778888999999999999988888888877653333
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.9e-11 Score=103.54 Aligned_cols=107 Identities=11% Similarity=-0.067 Sum_probs=98.5
Q ss_pred hhcC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChH
Q 013299 154 LKRI-EWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLP 232 (446)
Q Consensus 154 l~~~-p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~ 232 (446)
.... ++..+..+.+|..+...|++++|...|+-+..++|.++..|++||.++..+|+|++|+..|.+++ .++|+++.
T Consensus 27 ~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~--~L~~ddp~ 104 (157)
T PRK15363 27 LDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAA--QIKIDAPQ 104 (157)
T ss_pred HCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH--hcCCCCch
Confidence 3455 77888899999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC
Q 013299 233 ALLIASKICGEYPDLAEEGATFASRALECLG 263 (446)
Q Consensus 233 a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~ 263 (446)
++.+.| +|+...|+.+.|...|+.||....
T Consensus 105 ~~~~ag-~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 105 APWAAA-ECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHHH-HHHHHcCCHHHHHHHHHHHHHHhc
Confidence 998765 567778999999999999999764
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.9e-09 Score=99.72 Aligned_cols=327 Identities=17% Similarity=0.080 Sum_probs=207.3
Q ss_pred HHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHhCC
Q 013299 13 IFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRALLP 92 (446)
Q Consensus 13 ~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~al~~ 92 (446)
-...|-|++.+|.|++|...|..+-+.. +++. ++ .-.|+.+++-.|.+.+|..+-.++-+.
T Consensus 60 ~lWia~C~fhLgdY~~Al~~Y~~~~~~~-------~~~~-----el-------~vnLAcc~FyLg~Y~eA~~~~~ka~k~ 120 (557)
T KOG3785|consen 60 QLWIAHCYFHLGDYEEALNVYTFLMNKD-------DAPA-----EL-------GVNLACCKFYLGQYIEAKSIAEKAPKT 120 (557)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHhccC-------CCCc-----cc-------chhHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 3457899999999999999999876531 2221 12 223457788899999999888777553
Q ss_pred CCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 013299 93 CWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFS 172 (446)
Q Consensus 93 ~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~ 172 (446)
|-. .++...++.- .|+ |+-+..+...+. +..+-...|+.+..
T Consensus 121 -----pL~-~RLlfhlahk-----------------------lnd-Ek~~~~fh~~Lq--------D~~EdqLSLAsvhY 162 (557)
T KOG3785|consen 121 -----PLC-IRLLFHLAHK-----------------------LND-EKRILTFHSSLQ--------DTLEDQLSLASVHY 162 (557)
T ss_pred -----hHH-HHHHHHHHHH-----------------------hCc-HHHHHHHHHHHh--------hhHHHHHhHHHHHH
Confidence 211 1222222211 111 222222211111 11222345566666
Q ss_pred hcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcC-CCCHHHH
Q 013299 173 IAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEY-PDLAEEG 251 (446)
Q Consensus 173 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~-~~~~~eA 251 (446)
..-.|++|++.|.+++.-+|+.......++.||+.+.=|+-+...+.--| +-.|+.+-+....+...++. .|+..++
T Consensus 163 mR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL--~q~pdStiA~NLkacn~fRl~ngr~ae~ 240 (557)
T KOG3785|consen 163 MRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYL--RQFPDSTIAKNLKACNLFRLINGRTAED 240 (557)
T ss_pred HHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHH--HhCCCcHHHHHHHHHHHhhhhccchhHH
Confidence 66778888888888888888888888888888888888888888888888 77888887766555443331 1222111
Q ss_pred H----------------HHHH----------HHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHH
Q 013299 252 A----------------TFAS----------RALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQAL 305 (446)
Q Consensus 252 ~----------------~~~~----------~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~ 305 (446)
. ..++ .|++.+|+-- ...+.+..+|.+.|..+ ++..+|+...
T Consensus 241 E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~-~~IPEARlNL~iYyL~q-----------~dVqeA~~L~ 308 (557)
T KOG3785|consen 241 EKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLM-KHIPEARLNLIIYYLNQ-----------NDVQEAISLC 308 (557)
T ss_pred HHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHH-hhChHhhhhheeeeccc-----------ccHHHHHHHH
Confidence 1 1111 1233222210 11245566666665443 5678888777
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH---HhhcCCC-----CHHHHHHHHHHHHHccCHHHHHHHHHH
Q 013299 306 VSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKML---LKLEGGS-----NLKGWLLMARILSAQKRYEDAETILNA 377 (446)
Q Consensus 306 ~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~a---l~l~P~~-----~~~~~~~la~~~~~~g~~~eA~~~~~~ 377 (446)
+ .++|..|.-+.-.|.+....|+--...++.+-| +.+-..+ .......+|..++...+|++.+.++..
T Consensus 309 K----dl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnS 384 (557)
T KOG3785|consen 309 K----DLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNS 384 (557)
T ss_pred h----hcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 789999998888888888877654444433332 3332221 125677788888888999999988887
Q ss_pred HHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 013299 378 ALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLA 416 (446)
Q Consensus 378 al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~ 416 (446)
.-.-.- ++-...+++|.+....|.+.+|.+.|-++-.
T Consensus 385 i~sYF~--NdD~Fn~N~AQAk~atgny~eaEelf~~is~ 421 (557)
T KOG3785|consen 385 IESYFT--NDDDFNLNLAQAKLATGNYVEAEELFIRISG 421 (557)
T ss_pred HHHHhc--CcchhhhHHHHHHHHhcChHHHHHHHhhhcC
Confidence 777666 5557778899999999999999988866543
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.6e-11 Score=119.61 Aligned_cols=103 Identities=11% Similarity=0.061 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHH
Q 013299 295 ATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETI 374 (446)
Q Consensus 295 ~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~ 374 (446)
.+++++|+..|++++ +++|+++.+++++|.++..+|++++|+..+++++.++|++ ..+|+.+|.++..+|+|++|+..
T Consensus 15 ~~~~~~Ai~~~~~Al-~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~-~~a~~~lg~~~~~lg~~~eA~~~ 92 (356)
T PLN03088 15 DDDFALAVDLYTQAI-DLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSL-AKAYLRKGTACMKLEEYQTAKAA 92 (356)
T ss_pred cCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC-HHHHHHHHHHHHHhCCHHHHHHH
Confidence 467899999999999 9999999999999999999999999999999999999999 59999999999999999999999
Q ss_pred HHHHHhhcCCCCcHHHHHHHHHHHHHh
Q 013299 375 LNAALDQTGKWEQGELLRTKAKVQLVQ 401 (446)
Q Consensus 375 ~~~al~~~p~~~~~~~~~~~a~~~~~~ 401 (446)
|+++++++| ++..+...++.+...+
T Consensus 93 ~~~al~l~P--~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 93 LEKGASLAP--GDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHhCC--CCHHHHHHHHHHHHHH
Confidence 999999999 8888888877776555
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2e-08 Score=99.91 Aligned_cols=350 Identities=16% Similarity=0.071 Sum_probs=212.8
Q ss_pred HHHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHh
Q 013299 11 EAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRAL 90 (446)
Q Consensus 11 ~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~al 90 (446)
++++---.-+.+.|+|++|...+.++|... |+.. .+++.=-.++.+.++|++|+..-++-.
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~--------pdd~-----------~a~~cKvValIq~~ky~~ALk~ikk~~ 73 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIV--------PDDE-----------DAIRCKVVALIQLDKYEDALKLIKKNG 73 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcC--------CCcH-----------hhHhhhHhhhhhhhHHHHHHHHHHhcc
Confidence 445555556778899999999999998763 3321 223322245678888888874433322
Q ss_pred CCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Q 013299 91 LPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFA 170 (446)
Q Consensus 91 ~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~ 170 (446)
.. +..+... +-.+ -++...|..++|+..+ + ..++.+.......|.+
T Consensus 74 ~~----~~~~~~~----fEKA------------------Yc~Yrlnk~Dealk~~-----~---~~~~~~~~ll~L~AQv 119 (652)
T KOG2376|consen 74 AL----LVINSFF----FEKA------------------YCEYRLNKLDEALKTL-----K---GLDRLDDKLLELRAQV 119 (652)
T ss_pred hh----hhcchhh----HHHH------------------HHHHHcccHHHHHHHH-----h---cccccchHHHHHHHHH
Confidence 21 1111100 1111 1233456777777764 1 2345556677778888
Q ss_pred HHhcCCHHHHHHHHHhhCCC------------------------------CCC-cHHHHHHHHHHHHHCCChHHHHHHHH
Q 013299 171 FSIAGDLSSLATQIEELLPG------------------------------IIN-RKERYHILALCYYGAGEDLVALNLLR 219 (446)
Q Consensus 171 l~~~~~~~~A~~~~~~al~~------------------------------~p~-~~~~~~~lg~~~~~~g~~~eA~~~~~ 219 (446)
+.+.|+|++|...|+..++- .|+ .-+.+||.+.++...|+|.+|++.++
T Consensus 120 lYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~ 199 (652)
T KOG2376|consen 120 LYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLE 199 (652)
T ss_pred HHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 88888888888777776433 333 44678999999999999999999999
Q ss_pred HHhcC------CCCCC--ChH-----HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhh
Q 013299 220 TLLSG------SEDPK--CLP-----ALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSK 286 (446)
Q Consensus 220 ~al~~------~~~P~--~~~-----a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~ 286 (446)
++++. .-+-+ .+. ..+.++.+ ++..|+.+||...|...|+..+.+ ++..+.+-++|-.+-....-
T Consensus 200 kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayV-lQ~~Gqt~ea~~iy~~~i~~~~~D-~~~~Av~~NNLva~~~d~~~ 277 (652)
T KOG2376|consen 200 KALRICREKLEDEDTNEEEIEEELNPIRVQLAYV-LQLQGQTAEASSIYVDIIKRNPAD-EPSLAVAVNNLVALSKDQNY 277 (652)
T ss_pred HHHHHHHHhhcccccchhhHHHHHHHHHHHHHHH-HHHhcchHHHHHHHHHHHHhcCCC-chHHHHHhcchhhhcccccc
Confidence 99200 11111 111 23344444 455799999999999999965544 43444455554322111100
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHHhhCCC----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHH
Q 013299 287 VAITDFDRATRQAKALQALVSAARSTNMR----------DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWL 356 (446)
Q Consensus 287 ~~~~~~~~~~~~~eAl~~~~~al~~~~P~----------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~ 356 (446)
.+ | .++..++... ...++ --..+.|.+.+.+-.+.-+.+.+...+.-...|..- .-..
T Consensus 278 ---~d----~---~~l~~k~~~~-~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~-~~~l 345 (652)
T KOG2376|consen 278 ---FD----G---DLLKSKKSQV-FKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESL-FPIL 345 (652)
T ss_pred ---Cc----h---HHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHH-HHHH
Confidence 00 0 1222222222 11111 123456777777777777766666554444444431 2223
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhcCCCCc-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhccCCc
Q 013299 357 LMARILSAQKRYEDAETILNAALDQTGKWEQ-GELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDK 429 (446)
Q Consensus 357 ~la~~~~~~g~~~eA~~~~~~al~~~p~~~~-~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~~~~~~ 429 (446)
...........+..|...+...-+..| ++ ..+.+.++.+...+|+++.|++.+...++.|......++--|
T Consensus 346 l~~~t~~~~~~~~ka~e~L~~~~~~~p--~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P 417 (652)
T KOG2376|consen 346 LQEATKVREKKHKKAIELLLQFADGHP--EKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP 417 (652)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhccCC--chhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh
Confidence 334444444578999999999999999 55 778889999999999999999999987777766555444333
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.2e-09 Score=117.13 Aligned_cols=325 Identities=14% Similarity=0.007 Sum_probs=208.6
Q ss_pred HHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHhCCC
Q 013299 14 FLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRALLPC 93 (446)
Q Consensus 14 ~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~al~~~ 93 (446)
...+.++...|++++|...+..+.+..+...+...+. . ...+...++.++...|++++|...+++++...
T Consensus 413 ~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~-------~---~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 482 (903)
T PRK04841 413 LLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGT-------L---QAEFNALRAQVAINDGDPEEAERLAELALAEL 482 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchh-------H---HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 4567777889999999999988876532110000010 1 12233456788899999999999999999851
Q ss_pred CCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHhhcCCC--CHHHHHHHHHHH
Q 013299 94 WNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEW--DPSILDHLSFAF 171 (446)
Q Consensus 94 ~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~--~~~~~~~lg~~l 171 (446)
+..++.........++. .+...|++++|...+..+... .....+. ...++..+|.++
T Consensus 483 ~~~~~~~~~~a~~~lg~--------------------~~~~~G~~~~A~~~~~~al~~-~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 483 PLTWYYSRIVATSVLGE--------------------VHHCKGELARALAMMQQTEQM-ARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred CCccHHHHHHHHHHHHH--------------------HHHHcCCHHHHHHHHHHHHHH-HhhhcchHHHHHHHHHHHHHH
Confidence 11111000001111222 234578899998876443211 1111111 124567889999
Q ss_pred HhcCCHHHHHHHHHhhCCCCC--------CcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCC----C-ChHHHHHHH
Q 013299 172 SIAGDLSSLATQIEELLPGII--------NRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDP----K-CLPALLIAS 238 (446)
Q Consensus 172 ~~~~~~~~A~~~~~~al~~~p--------~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P----~-~~~a~~~~~ 238 (446)
...|++++|.+.+++++.+.. .....+..+|.+++..|++++|...+++++ .... . ...++..++
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al--~~~~~~~~~~~~~~~~~la 619 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGL--EVLSNYQPQQQLQCLAMLA 619 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhH--HhhhccCchHHHHHHHHHH
Confidence 999999999999999887521 123346678999999999999999999998 4322 1 233334445
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHH-HhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCH
Q 013299 239 KICGEYPDLAEEGATFASRALECLGDGCDQMESTANC-LLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDL 317 (446)
Q Consensus 239 ~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~-~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~ 317 (446)
.+. ...|++++|...+.++................. .++..+. ...|..++|...+.... ...+...
T Consensus 620 ~~~-~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~g~~~~A~~~l~~~~-~~~~~~~ 687 (903)
T PRK04841 620 KIS-LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYW----------QMTGDKEAAANWLRQAP-KPEFANN 687 (903)
T ss_pred HHH-HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHH----------HHCCCHHHHHHHHHhcC-CCCCccc
Confidence 554 457899999999999987533211000000000 0111110 11356677888877766 5433332
Q ss_pred H----HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC-----CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013299 318 S----ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS-----NLKGWLLMARILSAQKRYEDAETILNAALDQTG 383 (446)
Q Consensus 318 ~----a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~-----~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 383 (446)
. .+..+|.++...|++++|+..+++++...... ...++..+|.++..+|+.++|...+.+|+++..
T Consensus 688 ~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~ 762 (903)
T PRK04841 688 HFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLAN 762 (903)
T ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 2 24678999999999999999999999863221 135788899999999999999999999999875
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.2e-10 Score=110.42 Aligned_cols=219 Identities=17% Similarity=0.106 Sum_probs=161.8
Q ss_pred cccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCC
Q 013299 131 SFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGE 210 (446)
Q Consensus 131 ~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 210 (446)
.+...+++++|+... ..++...|+++++....-.++.+.++|++|+...++-....-.+... +..+-|++++++
T Consensus 21 ~~~~~~e~e~a~k~~-----~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~-fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 21 RHGKNGEYEEAVKTA-----NKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFF-FEKAYCEYRLNK 94 (652)
T ss_pred HhccchHHHHHHHHH-----HHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhh-HHHHHHHHHccc
Confidence 345678999998864 67888999999999999999999999999985554443322222222 688999999999
Q ss_pred hHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHH-hhchhHhhhhhhh
Q 013299 211 DLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCL-LGISLSAQSKVAI 289 (446)
Q Consensus 211 ~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~-lg~~~~~~~~~~~ 289 (446)
.++|+..++ .+ ++.+..+....+.++|+ ++++++|...|+..++...++.+ .....+ ++.
T Consensus 95 ~Dealk~~~-~~----~~~~~~ll~L~AQvlYr-l~~ydealdiY~~L~kn~~dd~d---~~~r~nl~a~---------- 155 (652)
T KOG2376|consen 95 LDEALKTLK-GL----DRLDDKLLELRAQVLYR-LERYDEALDIYQHLAKNNSDDQD---EERRANLLAV---------- 155 (652)
T ss_pred HHHHHHHHh-cc----cccchHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcCCchHH---HHHHHHHHHH----------
Confidence 999999999 33 55556566667888887 68999999999999884333211 111111 111
Q ss_pred chHHHHHHHHHHHHH-HHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----cCCCC---------HH
Q 013299 290 TDFDRATRQAKALQA-LVSAARSTNMR-DLSILYRLSLEYAEQRKLNAAHYYAKMLLKL-----EGGSN---------LK 353 (446)
Q Consensus 290 ~~~~~~~~~~eAl~~-~~~al~~~~P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l-----~P~~~---------~~ 353 (446)
..+... ..+.+ ...|. +.+.+||.+.++...|+|.+|++.+++|+.+ .-++. ..
T Consensus 156 ---------~a~l~~~~~q~v-~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~ 225 (652)
T KOG2376|consen 156 ---------AAALQVQLLQSV-PEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNP 225 (652)
T ss_pred ---------HHhhhHHHHHhc-cCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHH
Confidence 111111 45555 56666 6789999999999999999999999999432 11110 14
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhcCC
Q 013299 354 GWLLMARILSAQKRYEDAETILNAALDQTGK 384 (446)
Q Consensus 354 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~ 384 (446)
+...|+.++..+|+.+||...|...++.+|.
T Consensus 226 IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~ 256 (652)
T KOG2376|consen 226 IRVQLAYVLQLQGQTAEASSIYVDIIKRNPA 256 (652)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhcCC
Confidence 6778999999999999999999999999883
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.1e-11 Score=115.78 Aligned_cols=258 Identities=14% Similarity=0.035 Sum_probs=189.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhCCCCCCcH----HHHHHHHHHHHHCCChHHHHHHHH------HHhcCCCCCCChHHHH
Q 013299 166 HLSFAFSIAGDLSSLATQIEELLPGIINRK----ERYHILALCYYGAGEDLVALNLLR------TLLSGSEDPKCLPALL 235 (446)
Q Consensus 166 ~lg~~l~~~~~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~~~eA~~~~~------~al~~~~~P~~~~a~~ 235 (446)
.-|.-++++|+....+..|+.|++...++. .+|.+||.+|.-+++|++|++.-. +.+ .-.-....+.-
T Consensus 22 lEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~l--gdklGEAKssg 99 (639)
T KOG1130|consen 22 LEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLL--GDKLGEAKSSG 99 (639)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHh--cchhccccccc
Confidence 346778899999999999999999987764 468889999999999999988643 333 11111222233
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHcCC-CcchhhhHHHHHhhchhHhhhhhhhc---------hHHHHHHHHHHHHHH
Q 013299 236 IASKICGEYPDLAEEGATFASRALECLGD-GCDQMESTANCLLGISLSAQSKVAIT---------DFDRATRQAKALQAL 305 (446)
Q Consensus 236 ~~~~~~~~~~~~~~eA~~~~~~al~~~~~-~~~~~~~~a~~~lg~~~~~~~~~~~~---------~~~~~~~~~eAl~~~ 305 (446)
++|.+ ++.+|.+++|+.+..|-+..... .+....+.+++++|.+|..+|+-... ..+-...++.|++.|
T Consensus 100 NLGNt-lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy 178 (639)
T KOG1130|consen 100 NLGNT-LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFY 178 (639)
T ss_pred cccch-hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHH
Confidence 34444 55689999999999887764321 22345689999999999998864321 113344566777777
Q ss_pred HHHHHhhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC-----HHHHHHHHHHHHHccCHHHHHHH
Q 013299 306 VSAARSTNMRDL------SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN-----LKGWLLMARILSAQKRYEDAETI 374 (446)
Q Consensus 306 ~~al~~~~P~~~------~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~-----~~~~~~la~~~~~~g~~~eA~~~ 374 (446)
..-+ ++-..-- .++-+||..|+-.|+++.|+..-+.-+.+..... -.++.++|.++.-+|+++.|+++
T Consensus 179 ~eNL-~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~eh 257 (639)
T KOG1130|consen 179 MENL-ELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEH 257 (639)
T ss_pred HHHH-HHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHH
Confidence 7766 6544322 3567999999999999999998888777764421 14788999999999999999999
Q ss_pred HHHHHhhc----CCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhccC
Q 013299 375 LNAALDQT----GKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSS 427 (446)
Q Consensus 375 ~~~al~~~----p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~~~~ 427 (446)
|++.+.+. .+..-....|.+|..|.-..+++.|+.++.+=|.|.+.--+-+|+
T Consensus 258 YK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe 314 (639)
T KOG1130|consen 258 YKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGE 314 (639)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99887542 211235567899999999999999999999999999886665554
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.2e-07 Score=92.10 Aligned_cols=350 Identities=11% Similarity=0.036 Sum_probs=242.8
Q ss_pred HHHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHh
Q 013299 11 EAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRAL 90 (446)
Q Consensus 11 ~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~al 90 (446)
..|..-|..-++-|...-|...|.++++.+- + . ...+ ..+...+..-..+..++.|-.+|+-+|
T Consensus 208 ~~wikyarFE~k~g~~~~aR~VyerAie~~~----~----d-----~~~e---~lfvaFA~fEe~qkE~ERar~iykyAl 271 (677)
T KOG1915|consen 208 SNWIKYARFEEKHGNVALARSVYERAIEFLG----D----D-----EEAE---ILFVAFAEFEERQKEYERARFIYKYAL 271 (677)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh----h----H-----HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777777788888888877530 0 0 1111 222223344556778888888888888
Q ss_pred CCCCCCChHH-HHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHH
Q 013299 91 LPCWNLDAET-TAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSF 169 (446)
Q Consensus 91 ~~~~~~~~~~-~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~ 169 (446)
.. -|.+ +..+...+..+.-. |-...-++++|..-....++..++.+|.|-++|+..-.
T Consensus 272 d~----~pk~raeeL~k~~~~fEKq-----------------fGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylr 330 (677)
T KOG1915|consen 272 DH----IPKGRAEELYKKYTAFEKQ-----------------FGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLR 330 (677)
T ss_pred Hh----cCcccHHHHHHHHHHHHHH-----------------hcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHH
Confidence 76 2222 22232333222111 11223356666543333456778899999999999999
Q ss_pred HHHhcCCHHHHHHHHHhhCCCCCCcHH---------HHHHHHHH-HHHCCChHHHHHHHHHHhcCCCCCC----ChHHHH
Q 013299 170 AFSIAGDLSSLATQIEELLPGIINRKE---------RYHILALC-YYGAGEDLVALNLLRTLLSGSEDPK----CLPALL 235 (446)
Q Consensus 170 ~l~~~~~~~~A~~~~~~al~~~p~~~~---------~~~~lg~~-~~~~g~~~eA~~~~~~al~~~~~P~----~~~a~~ 235 (446)
.....|+.+.-.+.|++||.--|.-.+ .|.+.+.- -....+.+.+...|+.+| .+-|. ....++
T Consensus 331 L~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l--~lIPHkkFtFaKiWl 408 (677)
T KOG1915|consen 331 LEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACL--DLIPHKKFTFAKIWL 408 (677)
T ss_pred HHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--hhcCcccchHHHHHH
Confidence 989999999999999999998887554 23333321 124688999999999999 88886 344566
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCC
Q 013299 236 IASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMR 315 (446)
Q Consensus 236 ~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~ 315 (446)
+.+..-.+ +.+...|...+-.||-..|.+. .-.+|.-+- ..++.++.....|++-+ +..|.
T Consensus 409 myA~feIR-q~~l~~ARkiLG~AIG~cPK~K---lFk~YIelE--------------lqL~efDRcRkLYEkfl-e~~Pe 469 (677)
T KOG1915|consen 409 MYAQFEIR-QLNLTGARKILGNAIGKCPKDK---LFKGYIELE--------------LQLREFDRCRKLYEKFL-EFSPE 469 (677)
T ss_pred HHHHHHHH-HcccHHHHHHHHHHhccCCchh---HHHHHHHHH--------------HHHhhHHHHHHHHHHHH-hcChH
Confidence 55655555 4567889999988988766542 112222222 23567899999999999 99999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHH
Q 013299 316 DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS-NLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTK 394 (446)
Q Consensus 316 ~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~ 394 (446)
|..+|...|.+-...|+.+.|...|.-|+....-+ |...|-..-..-...|.++.|.+.|++.|+..+ +...|...
T Consensus 470 ~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~---h~kvWisF 546 (677)
T KOG1915|consen 470 NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQ---HVKVWISF 546 (677)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcc---cchHHHhH
Confidence 99999999999999999999999999998854333 323566666677889999999999999999988 55577777
Q ss_pred HHHHH-----HhC-----------CHHHHHHHHHHHHHHHhhh
Q 013299 395 AKVQL-----VQG-----------QLKGAVETYTHLLAALQVQ 421 (446)
Q Consensus 395 a~~~~-----~~g-----------~~~eA~~~~~~~l~l~~~~ 421 (446)
|.... ..| .+..|...|+++....++.
T Consensus 547 A~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~ 589 (677)
T KOG1915|consen 547 AKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKES 589 (677)
T ss_pred HHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhc
Confidence 66555 445 5667788888877766543
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.1e-11 Score=97.10 Aligned_cols=109 Identities=16% Similarity=0.075 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCC-CcHHHHHH
Q 013299 317 LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN--LKGWLLMARILSAQKRYEDAETILNAALDQTGKW-EQGELLRT 393 (446)
Q Consensus 317 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~--~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~~~~ 393 (446)
+++++.+|..+..+|++++|+..|++++..+|+++ ..+++.+|.++...|++++|+.++++++..+|+. ....+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 56789999999999999999999999999998762 2688899999999999999999999999998821 12678999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhc
Q 013299 394 KAKVQLVQGQLKGAVETYTHLLAALQVQTKTF 425 (446)
Q Consensus 394 ~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~~ 425 (446)
+|.++..+|++++|+..++++++..|++..+.
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 99999999999999999999999987655443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.9e-08 Score=95.91 Aligned_cols=268 Identities=14% Similarity=-0.016 Sum_probs=191.5
Q ss_pred CCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHhhCCCCC-CcHHHHHHHHHHHHHCCCh
Q 013299 134 PRNNIEEAILLLMILLRKVALKRIEWDPSILD-HLSFAFSIAGDLSSLATQIEELLPGII-NRKERYHILALCYYGAGED 211 (446)
Q Consensus 134 ~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~-~lg~~l~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~ 211 (446)
..|++.+|..++. + . +...+.|...+ .-+.+-.++|+.+.|=.++.++-+..+ +.......++.++...|++
T Consensus 96 ~eG~~~qAEkl~~----r-n-ae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~ 169 (400)
T COG3071 96 FEGDFQQAEKLLR----R-N-AEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDY 169 (400)
T ss_pred hcCcHHHHHHHHH----H-h-hhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCc
Confidence 4688999987652 1 1 22334444444 445677889999999999999999843 3456778889999999999
Q ss_pred HHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcc---hhhhHHHHHh-----------
Q 013299 212 LVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCD---QMESTANCLL----------- 277 (446)
Q Consensus 212 ~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~---~~~~~a~~~l----------- 277 (446)
+.|.....+++ ...|.++.++.....+ +.+.|.+.+......+.-+.---+++ .+...++..+
T Consensus 170 ~aA~~~v~~ll--~~~pr~~~vlrLa~r~-y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~ 246 (400)
T COG3071 170 PAARENVDQLL--EMTPRHPEVLRLALRA-YIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSE 246 (400)
T ss_pred hhHHHHHHHHH--HhCcCChHHHHHHHHH-HHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccch
Confidence 99999999999 8999999988765555 55578888877777665442111111 1111222210
Q ss_pred h--chhHhhhhhhh----------chHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 013299 278 G--ISLSAQSKVAI----------TDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLK 345 (446)
Q Consensus 278 g--~~~~~~~~~~~----------~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~ 345 (446)
| .++..+.+.-. ....+.|.+++|.+..+.++ +..-+.- ..-.++ ...-++.+.=++..++.++
T Consensus 247 gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~L-k~~~D~~-L~~~~~--~l~~~d~~~l~k~~e~~l~ 322 (400)
T COG3071 247 GLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDAL-KRQWDPR-LCRLIP--RLRPGDPEPLIKAAEKWLK 322 (400)
T ss_pred HHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHH-HhccChh-HHHHHh--hcCCCCchHHHHHHHHHHH
Confidence 0 01100000000 01245688899999999999 5543332 111222 1245788888999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 013299 346 LEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAAL 418 (446)
Q Consensus 346 l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~ 418 (446)
..|++| ..+..||.++.+.+.|.+|..+++.|++..| +..-+..+|.++.++|+..+|-+.++.++-+.
T Consensus 323 ~h~~~p-~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~---s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~ 391 (400)
T COG3071 323 QHPEDP-LLLSTLGRLALKNKLWGKASEALEAALKLRP---SASDYAELADALDQLGEPEEAEQVRREALLLT 391 (400)
T ss_pred hCCCCh-hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 999996 9999999999999999999999999999999 45667789999999999999999999999654
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=9.3e-10 Score=107.44 Aligned_cols=126 Identities=23% Similarity=0.111 Sum_probs=83.7
Q ss_pred CCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhh
Q 013299 192 INRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMES 271 (446)
Q Consensus 192 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~ 271 (446)
|....++|..+..++..|.+++|+..++..+ +..|+|+..+-..+.+++. .|+.++|++.+++++...|.. .
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~--~~~P~N~~~~~~~~~i~~~-~nk~~~A~e~~~kal~l~P~~-----~ 374 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLI--AAQPDNPYYLELAGDILLE-ANKAKEAIERLKKALALDPNS-----P 374 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHH--HhCCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHhcCCCc-----c
Confidence 8899999999999999999999999999999 8999999887777766554 455555555555555533221 2
Q ss_pred HHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 013299 272 TANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAH 337 (446)
Q Consensus 272 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~ 337 (446)
..+.++|.+|.+. |+..+|+..++..+ .-+|+|+..|..||.+|..+|+..+|.
T Consensus 375 ~l~~~~a~all~~-----------g~~~eai~~L~~~~-~~~p~dp~~w~~LAqay~~~g~~~~a~ 428 (484)
T COG4783 375 LLQLNLAQALLKG-----------GKPQEAIRILNRYL-FNDPEDPNGWDLLAQAYAELGNRAEAL 428 (484)
T ss_pred HHHHHHHHHHHhc-----------CChHHHHHHHHHHh-hcCCCCchHHHHHHHHHHHhCchHHHH
Confidence 3445555555443 23445555555555 555555555555555555555544333
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.9e-08 Score=93.84 Aligned_cols=296 Identities=16% Similarity=0.041 Sum_probs=196.3
Q ss_pred HHHHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHH
Q 013299 10 LEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRA 89 (446)
Q Consensus 10 ~~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~a 89 (446)
+....+.|..-...|+|.+|+....+.-+..| .| .-++...+..-.+.|+.+.|=.+..++
T Consensus 84 a~~~~~egl~~l~eG~~~qAEkl~~rnae~~e------~p-------------~l~~l~aA~AA~qrgd~~~an~yL~ea 144 (400)
T COG3071 84 ARKALNEGLLKLFEGDFQQAEKLLRRNAEHGE------QP-------------VLAYLLAAEAAQQRGDEDRANRYLAEA 144 (400)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCc------ch-------------HHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 34455678888888999999887666333210 11 123333446667899999999999998
Q ss_pred hCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHH
Q 013299 90 LLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSF 169 (446)
Q Consensus 90 l~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~ 169 (446)
-+.++ ++.-. .....+. +...+++++.|...+ +..++..|.++.+.-..-.
T Consensus 145 ae~~~--~~~l~--v~ltrar--------------------lll~~~d~~aA~~~v-----~~ll~~~pr~~~vlrLa~r 195 (400)
T COG3071 145 AELAG--DDTLA--VELTRAR--------------------LLLNRRDYPAARENV-----DQLLEMTPRHPEVLRLALR 195 (400)
T ss_pred hccCC--CchHH--HHHHHHH--------------------HHHhCCCchhHHHHH-----HHHHHhCcCChHHHHHHHH
Confidence 88732 21111 1111122 233456677776543 5567888999999999999
Q ss_pred HHHhcCCHHHHHHHHHhhCCCCCCcH---HHHHHHHH--HHHHCCChHHHHH---HHH---HHhcCCCCCCChHHHHHHH
Q 013299 170 AFSIAGDLSSLATQIEELLPGIINRK---ERYHILAL--CYYGAGEDLVALN---LLR---TLLSGSEDPKCLPALLIAS 238 (446)
Q Consensus 170 ~l~~~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~--~~~~~g~~~eA~~---~~~---~al~~~~~P~~~~a~~~~~ 238 (446)
+|...|++.+....+.+.-+..--+. .-+-+.+. ++.+.++-+.+.. ..+ +.+ +-+| ......+
T Consensus 196 ~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~l--r~~p---~l~~~~a 270 (400)
T COG3071 196 AYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKL--RNDP---ELVVAYA 270 (400)
T ss_pred HHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHh--hcCh---hHHHHHH
Confidence 99999999988877766554432222 22222221 1222222222222 111 223 2333 3333222
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHH
Q 013299 239 KICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLS 318 (446)
Q Consensus 239 ~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~ 318 (446)
..+.+.|..++|....+.+++..-+ ......++.. +.++..+=++..++.+ +.+|++|.
T Consensus 271 -~~li~l~~~~~A~~~i~~~Lk~~~D------~~L~~~~~~l-------------~~~d~~~l~k~~e~~l-~~h~~~p~ 329 (400)
T COG3071 271 -ERLIRLGDHDEAQEIIEDALKRQWD------PRLCRLIPRL-------------RPGDPEPLIKAAEKWL-KQHPEDPL 329 (400)
T ss_pred -HHHHHcCChHHHHHHHHHHHHhccC------hhHHHHHhhc-------------CCCCchHHHHHHHHHH-HhCCCChh
Confidence 3355689999999999999985322 1222222322 2345677788899999 99999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 013299 319 ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQ 381 (446)
Q Consensus 319 a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 381 (446)
.++.||.++.+.+.+.+|..+++.|++..|+. ..|..+|.++.++|+..+|.+..+.++..
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~--~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKLRPSA--SDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh--hhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999983 88999999999999999999999999854
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=7.3e-11 Score=116.39 Aligned_cols=101 Identities=10% Similarity=-0.013 Sum_probs=95.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHH
Q 013299 320 LYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQL 399 (446)
Q Consensus 320 ~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~ 399 (446)
+...|..+...|++++|+..|++|++++|++ ..+|.++|.++..+|++++|+..+++++.++| +++.+++.+|.++.
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~-~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P--~~~~a~~~lg~~~~ 81 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNN-AELYADRAQANIKLGNFTEAVADANKAIELDP--SLAKAYLRKGTACM 81 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--CCHHHHHHHHHHHH
Confidence 5566888899999999999999999999999 59999999999999999999999999999999 89999999999999
Q ss_pred HhCCHHHHHHHHHHHHHHHhhhhh
Q 013299 400 VQGQLKGAVETYTHLLAALQVQTK 423 (446)
Q Consensus 400 ~~g~~~eA~~~~~~~l~l~~~~~~ 423 (446)
.+|++++|+..|++++++.|++..
T Consensus 82 ~lg~~~eA~~~~~~al~l~P~~~~ 105 (356)
T PLN03088 82 KLEEYQTAKAALEKGASLAPGDSR 105 (356)
T ss_pred HhCCHHHHHHHHHHHHHhCCCCHH
Confidence 999999999999999999876544
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.5e-10 Score=107.41 Aligned_cols=121 Identities=21% Similarity=0.143 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccC---HHHHHHH
Q 013299 298 QAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKR---YEDAETI 374 (446)
Q Consensus 298 ~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~---~~eA~~~ 374 (446)
.++-+.-++.-+ ..||+|++-|..||.+|..+|+++.|...|.+|+++.|+++ +.+..+|.+++.+.. -.+|...
T Consensus 138 ~~~l~a~Le~~L-~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~-~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 138 MEALIARLETHL-QQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNP-EILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred HHHHHHHHHHHH-HhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhcCCcccHHHHHH
Confidence 567778888999 99999999999999999999999999999999999999995 999999999987643 5689999
Q ss_pred HHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhh
Q 013299 375 LNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQT 422 (446)
Q Consensus 375 ~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~ 422 (446)
+++++.++| ++..+.+.+|..+.++|++.+|+..|+..|+..|-+.
T Consensus 216 l~~al~~D~--~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 216 LRQALALDP--ANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHhcCC--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 999999999 9999999999999999999999999999999987543
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.7e-09 Score=97.18 Aligned_cols=183 Identities=16% Similarity=0.052 Sum_probs=148.5
Q ss_pred CCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcch
Q 013299 189 PGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQ 268 (446)
Q Consensus 189 ~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~ 268 (446)
...|+.-..+-+...+....|+.+-|..++++.. ...|+...+.-+.| +.++-.|++++|+++|+..++..|.+.
T Consensus 46 ~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~--~~fp~S~RV~~lka-m~lEa~~~~~~A~e~y~~lL~ddpt~~-- 120 (289)
T KOG3060|consen 46 ALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLR--DRFPGSKRVGKLKA-MLLEATGNYKEAIEYYESLLEDDPTDT-- 120 (289)
T ss_pred ccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHH--HhCCCChhHHHHHH-HHHHHhhchhhHHHHHHHHhccCcchh--
Confidence 4567777777888888999999999999999988 66699888765444 456778999999999999999543331
Q ss_pred hhhHHHHHhhc-hhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 013299 269 MESTANCLLGI-SLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLE 347 (446)
Q Consensus 269 ~~~~a~~~lg~-~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~ 347 (446)
+-.-.-. +... +|+.-+|++.+.+-+ +.-|+|+++|..++.+|...|++++|.-++++.+-++
T Consensus 121 ----v~~KRKlAilka-----------~GK~l~aIk~ln~YL-~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~ 184 (289)
T KOG3060|consen 121 ----VIRKRKLAILKA-----------QGKNLEAIKELNEYL-DKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ 184 (289)
T ss_pred ----HHHHHHHHHHHH-----------cCCcHHHHHHHHHHH-HHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC
Confidence 1111111 1111 355669999999999 9999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHhhcCCCCcHHHHHHHH
Q 013299 348 GGSNLKGWLLMARILSAQK---RYEDAETILNAALDQTGKWEQGELLRTKA 395 (446)
Q Consensus 348 P~~~~~~~~~la~~~~~~g---~~~eA~~~~~~al~~~p~~~~~~~~~~~a 395 (446)
|-++ ..+..+|.+++-+| ++.-|..+|.++++++| .+..+++-+.
T Consensus 185 P~n~-l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~--~~~ral~GI~ 232 (289)
T KOG3060|consen 185 PFNP-LYFQRLAEVLYTQGGAENLELARKYYERALKLNP--KNLRALFGIY 232 (289)
T ss_pred CCcH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh--HhHHHHHHHH
Confidence 9995 88889999998876 46788999999999999 7877776443
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.8e-10 Score=100.22 Aligned_cols=120 Identities=13% Similarity=0.003 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC--HHHHHHHHHHHHHccCHHHHHH
Q 013299 298 QAKALQALVSAARSTNMRD--LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN--LKGWLLMARILSAQKRYEDAET 373 (446)
Q Consensus 298 ~~eAl~~~~~al~~~~P~~--~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~--~~~~~~la~~~~~~g~~~eA~~ 373 (446)
+..+...+.+.+ +.++.+ ..+++++|.++..+|++++|+..|++++.+.|++. ..+|.++|.++..+|++++|+.
T Consensus 15 ~~~~~~~l~~~~-~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~ 93 (168)
T CHL00033 15 FTIVADILLRIL-PTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALE 93 (168)
T ss_pred cccchhhhhHhc-cCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 455666666666 666666 66779999999999999999999999999987642 2589999999999999999999
Q ss_pred HHHHHHhhcCCCCcHHHHHHHHHHHH-------HhCCHHHHHHHHHHHHHHHhh
Q 013299 374 ILNAALDQTGKWEQGELLRTKAKVQL-------VQGQLKGAVETYTHLLAALQV 420 (446)
Q Consensus 374 ~~~~al~~~p~~~~~~~~~~~a~~~~-------~~g~~~eA~~~~~~~l~l~~~ 420 (446)
.+++++..+| ++...+.++|.++. .+|++++|+..+.+++..+..
T Consensus 94 ~~~~Al~~~~--~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 145 (168)
T CHL00033 94 YYFQALERNP--FLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQ 145 (168)
T ss_pred HHHHHHHhCc--CcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 9999999999 88888999999988 888988777777766665543
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=99.22 E-value=5e-11 Score=88.31 Aligned_cols=67 Identities=18% Similarity=0.218 Sum_probs=51.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhhcC
Q 013299 316 DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQK-RYEDAETILNAALDQTG 383 (446)
Q Consensus 316 ~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g-~~~eA~~~~~~al~~~p 383 (446)
++.+|+.+|.++...|++++|+.+|++++.++|++ +.+|+++|.++..+| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~-~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNN-AEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTH-HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 56777777777777777777777777777777777 477777777777777 67777777777777776
|
... |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.7e-10 Score=115.50 Aligned_cols=197 Identities=15% Similarity=0.103 Sum_probs=164.2
Q ss_pred CCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhh
Q 013299 192 INRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMES 271 (446)
Q Consensus 192 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~ 271 (446)
|......-.+|.++...|-..+|+..|++.- ..+|. ..||...|+...|.....+-++ -+|+ +
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle--mw~~v---------i~CY~~lg~~~kaeei~~q~le-k~~d-----~ 457 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE--MWDPV---------ILCYLLLGQHGKAEEINRQELE-KDPD-----P 457 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH--HHHHH---------HHHHHHhcccchHHHHHHHHhc-CCCc-----c
Confidence 3344455669999999999999999999966 44441 2355556788889999988888 3444 5
Q ss_pred HHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Q 013299 272 TANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN 351 (446)
Q Consensus 272 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~ 351 (446)
..|..+|.+..+. ..+++|.+..+..- ..|.+.+|......++++++..+++.+++++|-.
T Consensus 458 ~lyc~LGDv~~d~-----------s~yEkawElsn~~s-------arA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq- 518 (777)
T KOG1128|consen 458 RLYCLLGDVLHDP-----------SLYEKAWELSNYIS-------ARAQRSLALLILSNKDFSEADKHLERSLEINPLQ- 518 (777)
T ss_pred hhHHHhhhhccCh-----------HHHHHHHHHhhhhh-------HHHHHhhccccccchhHHHHHHHHHHHhhcCccc-
Confidence 7899999987553 34677777666555 4588899988888999999999999999999999
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhcc
Q 013299 352 LKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFS 426 (446)
Q Consensus 352 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~~~ 426 (446)
...|+.+|.+..+.++++.|..+|.+++.+.| ++.++|.+++..+...|+..+|...+.++++.+.++..+|.
T Consensus 519 ~~~wf~~G~~ALqlek~q~av~aF~rcvtL~P--d~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWE 591 (777)
T KOG1128|consen 519 LGTWFGLGCAALQLEKEQAAVKAFHRCVTLEP--DNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWE 591 (777)
T ss_pred hhHHHhccHHHHHHhhhHHHHHHHHHHhhcCC--CchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeee
Confidence 49999999999999999999999999999999 99999999999999999999999999999998855544443
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.21 E-value=8.3e-10 Score=105.36 Aligned_cols=202 Identities=14% Similarity=0.055 Sum_probs=135.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCC--cHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHH
Q 013299 160 DPSILDHLSFAFSIAGDLSSLATQIEELLPGIIN--RKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIA 237 (446)
Q Consensus 160 ~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~ 237 (446)
...+...++..+...++.+.++..++..+..... ++-...--|.++...|++++|+..+.+. ++.+.....
T Consensus 65 ~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-------~~lE~~al~ 137 (290)
T PF04733_consen 65 ELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-------GSLELLALA 137 (290)
T ss_dssp CCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-------TCHHHHHHH
T ss_pred hHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-------CcccHHHHH
Confidence 3445566666666556777788888776654433 4445555677777788888888766553 345555444
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhH--hhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCC
Q 013299 238 SKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLS--AQSKVAITDFDRATRQAKALQALVSAARSTNMR 315 (446)
Q Consensus 238 ~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~--~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~ 315 (446)
-.+++. .++++.|.+.++.+-+ ..++. ....++.++. ..| .+.+.+|.-.|++.. ...|.
T Consensus 138 Vqi~L~-~~R~dlA~k~l~~~~~-~~eD~------~l~qLa~awv~l~~g---------~e~~~~A~y~f~El~-~~~~~ 199 (290)
T PF04733_consen 138 VQILLK-MNRPDLAEKELKNMQQ-IDEDS------ILTQLAEAWVNLATG---------GEKYQDAFYIFEELS-DKFGS 199 (290)
T ss_dssp HHHHHH-TT-HHHHHHHHHHHHC-CSCCH------HHHHHHHHHHHHHHT---------TTCCCHHHHHHHHHH-CCS--
T ss_pred HHHHHH-cCCHHHHHHHHHHHHh-cCCcH------HHHHHHHHHHHHHhC---------chhHHHHHHHHHHHH-hccCC
Confidence 444444 7888888888887766 33321 2222222221 111 124678999999988 88888
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCH-HHHHHHHHHHHhhcCCCCcHH
Q 013299 316 DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRY-EDAETILNAALDQTGKWEQGE 389 (446)
Q Consensus 316 ~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~-~eA~~~~~~al~~~p~~~~~~ 389 (446)
++..++.++.++..+|++++|...+++|+..+|+++ .++.+++.+...+|+. +.+..++.+....+| +++-
T Consensus 200 t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~-d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p--~h~~ 271 (290)
T PF04733_consen 200 TPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDP-DTLANLIVCSLHLGKPTEAAERYLSQLKQSNP--NHPL 271 (290)
T ss_dssp SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHH-HHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTT--TSHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCH-HHHHHHHHHHHHhCCChhHHHHHHHHHHHhCC--CChH
Confidence 999999999999999999999999999999999985 9999999998898988 556667777777888 6654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.20 E-value=3e-10 Score=105.37 Aligned_cols=124 Identities=22% Similarity=0.146 Sum_probs=108.3
Q ss_pred CHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHH
Q 013299 176 DLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFA 255 (446)
Q Consensus 176 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~ 255 (446)
..+..+.-++..+..+|++++.|..||.+|+.+|++..|...|.+|+ ++.|+++..+...+.+++.+.|.
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~--rL~g~n~~~~~g~aeaL~~~a~~-------- 206 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNAL--RLAGDNPEILLGLAEALYYQAGQ-------- 206 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHhcCC--------
Confidence 35677788899999999999999999999999999999999999999 99999999887666554432211
Q ss_pred HHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q 013299 256 SRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNA 335 (446)
Q Consensus 256 ~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~ 335 (446)
....++...|++++ .+||+|..+++.||..+.++|++.+
T Consensus 207 ----------------------------------------~~ta~a~~ll~~al-~~D~~~iral~lLA~~afe~g~~~~ 245 (287)
T COG4235 207 ----------------------------------------QMTAKARALLRQAL-ALDPANIRALSLLAFAAFEQGDYAE 245 (287)
T ss_pred ----------------------------------------cccHHHHHHHHHHH-hcCCccHHHHHHHHHHHHHcccHHH
Confidence 12367889999999 9999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCC
Q 013299 336 AHYYAKMLLKLEGGS 350 (446)
Q Consensus 336 A~~~~~~al~l~P~~ 350 (446)
|....+..+.+.|.+
T Consensus 246 A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 246 AAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHHHHHHHhcCCCC
Confidence 999999999999876
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.9e-10 Score=100.51 Aligned_cols=107 Identities=18% Similarity=0.155 Sum_probs=91.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHH
Q 013299 313 NMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN--LKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGEL 390 (446)
Q Consensus 313 ~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~--~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 390 (446)
+|..+.+++++|..+...|++++|+.+|++++.+.|+.+ ..++.++|.++..+|++++|+.++++++...| ++...
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~ 108 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP--KQPSA 108 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--ccHHH
Confidence 345667889999999999999999999999999887642 36899999999999999999999999999999 88999
Q ss_pred HHHHHHHHHHhCC--------------HHHHHHHHHHHHHHHhhh
Q 013299 391 LRTKAKVQLVQGQ--------------LKGAVETYTHLLAALQVQ 421 (446)
Q Consensus 391 ~~~~a~~~~~~g~--------------~~eA~~~~~~~l~l~~~~ 421 (446)
+..+|.++...|+ +++|++.+++++.+.|++
T Consensus 109 ~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 109 LNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 9999999998887 456666666666666554
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.3e-10 Score=88.46 Aligned_cols=98 Identities=18% Similarity=0.197 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHH
Q 013299 319 ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQ 398 (446)
Q Consensus 319 a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~ 398 (446)
+++.+|.++..+|++++|+..+++++...|++ ..++..+|.++...|++++|+.++++++...| .+..+++.+|.++
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~ 78 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDN-ADAYYNLAAAYYKLGKYEEALEDYEKALELDP--DNAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--cchhHHHHHHHHH
Confidence 57788888888999999999999999988887 48888899999999999999999999988888 7778888889999
Q ss_pred HHhCCHHHHHHHHHHHHHHHh
Q 013299 399 LVQGQLKGAVETYTHLLAALQ 419 (446)
Q Consensus 399 ~~~g~~~eA~~~~~~~l~l~~ 419 (446)
...|++++|...+.+++++.|
T Consensus 79 ~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 79 YKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHhHHHHHHHHHHHHccCC
Confidence 999999999998888887654
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.18 E-value=8.8e-10 Score=105.22 Aligned_cols=251 Identities=16% Similarity=0.035 Sum_probs=172.7
Q ss_pred CCcHHHHHHHHHHHHHHHHhhcCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHH
Q 013299 135 RNNIEEAILLLMILLRKVALKRIE-WDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLV 213 (446)
Q Consensus 135 ~~~~~eA~~~l~~~~~~~~l~~~p-~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~e 213 (446)
.|+|..++... + +...+| ...+....+.+++...|+++..+...... .+....+...++..+...++.+.
T Consensus 14 ~G~Y~~~i~e~-----~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~---~~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 14 LGNYQQCINEA-----S-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKS---SSPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp TT-HHHHCHHH-----H-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TT---SSCCCHHHHHHHHHHCTSTTHHC
T ss_pred hhhHHHHHHHh-----h-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccC---CChhHHHHHHHHHHHhCccchHH
Confidence 57788887532 1 112222 23446678889999999998877665442 24445666777777766677888
Q ss_pred HHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHH
Q 013299 214 ALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFD 293 (446)
Q Consensus 214 A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~ 293 (446)
++..++..+.....+.++...+ .++..+...|++++|+..+.+. .+ ..+....-.++..
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~-~~A~i~~~~~~~~~AL~~l~~~-----~~-----lE~~al~Vqi~L~---------- 143 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQL-LAATILFHEGDYEEALKLLHKG-----GS-----LELLALAVQILLK---------- 143 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHH-HHHHHHCCCCHHHHHHCCCTTT-----TC-----HHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHhccccccHHHHH-HHHHHHHHcCCHHHHHHHHHcc-----Cc-----ccHHHHHHHHHHH----------
Confidence 9999988773111223443333 4555566689998888776543 11 2233333334433
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHH
Q 013299 294 RATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQR--KLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDA 371 (446)
Q Consensus 294 ~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~--~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA 371 (446)
.++.+.|.+.++..- +.+.++.-+....|++....| .+.+|...|+......|.. ...++.+|.+++.+|+|++|
T Consensus 144 -~~R~dlA~k~l~~~~-~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t-~~~lng~A~~~l~~~~~~eA 220 (290)
T PF04733_consen 144 -MNRPDLAEKELKNMQ-QIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGST-PKLLNGLAVCHLQLGHYEEA 220 (290)
T ss_dssp -TT-HHHHHHHHHHHH-CCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--S-HHHHHHHHHHHHHCT-HHHH
T ss_pred -cCCHHHHHHHHHHHH-hcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhCCHHHH
Confidence 357899999999999 999888777777777777766 6999999999987776777 48899999999999999999
Q ss_pred HHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHH-HHHHHHHHHHHHHhh
Q 013299 372 ETILNAALDQTGKWEQGELLRTKAKVQLVQGQLK-GAVETYTHLLAALQV 420 (446)
Q Consensus 372 ~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~-eA~~~~~~~l~l~~~ 420 (446)
...+++++..+| .+++.+.+++.+...+|+.. .+.+...++....|.
T Consensus 221 e~~L~~al~~~~--~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~ 268 (290)
T PF04733_consen 221 EELLEEALEKDP--NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPN 268 (290)
T ss_dssp HHHHHHHCCC-C--CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTT
T ss_pred HHHHHHHHHhcc--CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCC
Confidence 999999999999 89999999999999999994 455566666666554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.1e-09 Score=107.59 Aligned_cols=155 Identities=15% Similarity=0.107 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHH---HHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 013299 248 AEEGATFASRAL---ECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLS 324 (446)
Q Consensus 248 ~~eA~~~~~~al---~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg 324 (446)
.+.|+..|.+++ +. +|+ .+.+|..++.|+....-.. +.+......+|++..++|+ +++|+|+.++..+|
T Consensus 274 ~~~Al~lf~ra~~~~~l-dp~----~a~a~~~lA~~h~~~~~~g--~~~~~~~~~~a~~~A~rAv-eld~~Da~a~~~~g 345 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDI-QTL----KTECYCLLAECHMSLALHG--KSELELAAQKALELLDYVS-DITTVDGKILAIMG 345 (458)
T ss_pred HHHHHHHHHHHhhcccC-Ccc----cHHHHHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHH-hcCCCCHHHHHHHH
Confidence 456777788887 52 222 3566666766665442110 1112345689999999999 99999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHH-HHHhCC
Q 013299 325 LEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKV-QLVQGQ 403 (446)
Q Consensus 325 ~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~-~~~~g~ 403 (446)
.++...++++.|+..|++|+.++|+. +.+|+..|+++.-.|+.++|+..++++++++| -...+-..+-.+ ..--..
T Consensus 346 ~~~~~~~~~~~a~~~f~rA~~L~Pn~-A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP--~~~~~~~~~~~~~~~~~~~ 422 (458)
T PRK11906 346 LITGLSGQAKVSHILFEQAKIHSTDI-ASLYYYRALVHFHNEKIEEARICIDKSLQLEP--RRRKAVVIKECVDMYVPNP 422 (458)
T ss_pred HHHHhhcchhhHHHHHHHHhhcCCcc-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCc--hhhHHHHHHHHHHHHcCCc
Confidence 99999999999999999999999999 59999999999999999999999999999999 554444433333 344567
Q ss_pred HHHHHHHHHH
Q 013299 404 LKGAVETYTH 413 (446)
Q Consensus 404 ~~eA~~~~~~ 413 (446)
.++|+..|-+
T Consensus 423 ~~~~~~~~~~ 432 (458)
T PRK11906 423 LKNNIKLYYK 432 (458)
T ss_pred hhhhHHHHhh
Confidence 7888877643
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=1e-09 Score=96.94 Aligned_cols=115 Identities=20% Similarity=0.167 Sum_probs=96.4
Q ss_pred HHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCC
Q 013299 256 SRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRD---LSILYRLSLEYAEQRK 332 (446)
Q Consensus 256 ~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~---~~a~~~lg~~~~~~~~ 332 (446)
+.+....+.+.....+.+++.+|..+... |++++|+.+|++++ .+.|+. +.+++++|.++...|+
T Consensus 20 ~~~~~~~~~~~~~~~a~~~~~lg~~~~~~-----------g~~~~A~~~~~~al-~~~~~~~~~~~~~~~la~~~~~~g~ 87 (172)
T PRK02603 20 DLILKILPINKKAKEAFVYYRDGMSAQAD-----------GEYAEALENYEEAL-KLEEDPNDRSYILYNMGIIYASNGE 87 (172)
T ss_pred HHHHHHcccccHhhhHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-HHhhccchHHHHHHHHHHHHHHcCC
Confidence 33444344444445577888899888654 67899999999999 988764 4689999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccC--------------HHHHHHHHHHHHhhcC
Q 013299 333 LNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKR--------------YEDAETILNAALDQTG 383 (446)
Q Consensus 333 ~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~--------------~~eA~~~~~~al~~~p 383 (446)
+++|+..+++++.++|++ ..++..+|.++..+|+ +++|+.++++++..+|
T Consensus 88 ~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p 151 (172)
T PRK02603 88 HDKALEYYHQALELNPKQ-PSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAP 151 (172)
T ss_pred HHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCc
Confidence 999999999999999999 5999999999999888 6788888888888888
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.5e-09 Score=99.54 Aligned_cols=259 Identities=19% Similarity=0.133 Sum_probs=190.7
Q ss_pred CCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHH
Q 013299 134 PRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLV 213 (446)
Q Consensus 134 ~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~e 213 (446)
...+++.||.++ ..-.+++|.+..++..+|.+|....++..|.+||++.-...|......+..+..++..+.+.+
T Consensus 22 ~d~ry~DaI~~l-----~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~AD 96 (459)
T KOG4340|consen 22 RDARYADAIQLL-----GSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYAD 96 (459)
T ss_pred HHhhHHHHHHHH-----HHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHH
Confidence 345677888765 455688899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCh-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchH
Q 013299 214 ALNLLRTLLSGSEDPKCL-PALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDF 292 (446)
Q Consensus 214 A~~~~~~al~~~~~P~~~-~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~ 292 (446)
|+....... . +|+-. ..+-.-+.+.+. .+++..+.. .++..|... .+....+.|....+.
T Consensus 97 ALrV~~~~~--D-~~~L~~~~lqLqaAIkYs-e~Dl~g~rs----LveQlp~en---~Ad~~in~gCllyke-------- 157 (459)
T KOG4340|consen 97 ALRVAFLLL--D-NPALHSRVLQLQAAIKYS-EGDLPGSRS----LVEQLPSEN---EADGQINLGCLLYKE-------- 157 (459)
T ss_pred HHHHHHHhc--C-CHHHHHHHHHHHHHHhcc-cccCcchHH----HHHhccCCC---ccchhccchheeecc--------
Confidence 999998877 2 23211 111222334343 244434333 344344321 156777888877654
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----hcCCCC-----------------
Q 013299 293 DRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLK----LEGGSN----------------- 351 (446)
Q Consensus 293 ~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~----l~P~~~----------------- 351 (446)
|++++|++-|+.|+ +..--+|-.-|+++.++++.|+++.|+++....+. -.|+..
T Consensus 158 ---gqyEaAvqkFqaAl-qvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~ 233 (459)
T KOG4340|consen 158 ---GQYEAAVQKFQAAL-QVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTL 233 (459)
T ss_pred ---ccHHHHHHHHHHHH-hhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchH
Confidence 67999999999999 99999999999999999999999999998877655 344311
Q ss_pred -------HHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCC---CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhh
Q 013299 352 -------LKGWLLMARILSAQKRYEDAETILNAALDQTGKW---EQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQ 421 (446)
Q Consensus 352 -------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~ 421 (446)
.++++..+.|++..|+++.|.+.+. ...|.. -++..+.+++.. ...|++.++.+-+.-+|+++|--
T Consensus 234 ~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLt---DmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPfP 309 (459)
T KOG4340|consen 234 VLHQSALVEAFNLKAAIEYQLRNYEAAQEALT---DMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPFP 309 (459)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccHHHHHHHhh---cCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCCC
Confidence 3567778889999999998876653 333421 134555555543 34577888888888888887743
Q ss_pred hhh
Q 013299 422 TKT 424 (446)
Q Consensus 422 ~~~ 424 (446)
+++
T Consensus 310 ~ET 312 (459)
T KOG4340|consen 310 PET 312 (459)
T ss_pred hHH
Confidence 333
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.17 E-value=8e-07 Score=86.57 Aligned_cols=236 Identities=14% Similarity=0.088 Sum_probs=148.5
Q ss_pred HHhcCCHHHHHHHHHhhCCCCCCcH--HHHHHHHHHHHHCCC---hHHHHH-----HHHHHhcCCCCCCChHHHHHHHHH
Q 013299 171 FSIAGDLSSLATQIEELLPGIINRK--ERYHILALCYYGAGE---DLVALN-----LLRTLLSGSEDPKCLPALLIASKI 240 (446)
Q Consensus 171 l~~~~~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~g~---~~eA~~-----~~~~al~~~~~P~~~~a~~~~~~~ 240 (446)
-..++.++.|.-.|.-||+.-|.+- +.+-.+-..--+-|+ .++++. .|++-+ +.||-|.++++-...+
T Consensus 254 Ee~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v--~~np~nYDsWfdylrL 331 (677)
T KOG1915|consen 254 EERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEV--SKNPYNYDSWFDYLRL 331 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHH--HhCCCCchHHHHHHHH
Confidence 3456788999999999999999883 333333322223344 344543 378888 8899999998766555
Q ss_pred HhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHh--hchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCH-
Q 013299 241 CGEYPDLAEEGATFASRALECLGDGCDQMESTANCLL--GISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDL- 317 (446)
Q Consensus 241 ~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~l--g~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~- 317 (446)
....|+.+.-...|++||...||..+.....=|.+| -.++... ...++.+.+.+.|+.++ .+-|+--
T Consensus 332 -~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeE--------le~ed~ertr~vyq~~l-~lIPHkkF 401 (677)
T KOG1915|consen 332 -EESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEE--------LEAEDVERTRQVYQACL-DLIPHKKF 401 (677)
T ss_pred -HHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHH--------HHhhhHHHHHHHHHHHH-hhcCcccc
Confidence 345688889999999999988875443333323332 2222221 12345566777777777 7777642
Q ss_pred ---HHHHHHHHHHH---------------------------------HcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Q 013299 318 ---SILYRLSLEYA---------------------------------EQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARI 361 (446)
Q Consensus 318 ---~a~~~lg~~~~---------------------------------~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~ 361 (446)
.+|...|.... +.+++|.....|++-+.-.|.+ -.+|...|.+
T Consensus 402 tFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~-c~~W~kyaEl 480 (677)
T KOG1915|consen 402 TFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPEN-CYAWSKYAEL 480 (677)
T ss_pred hHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHh-hHHHHHHHHH
Confidence 33333333333 3456666666666777777776 3777777777
Q ss_pred HHHccCHHHHHHHHHHHHhhcCCCCcHHH-HHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Q 013299 362 LSAQKRYEDAETILNAALDQTGKWEQGEL-LRTKAKVQLVQGQLKGAVETYTHLLAALQV 420 (446)
Q Consensus 362 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~-~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~ 420 (446)
-..+|+.+.|..+|+-|++.... |-+++ |-..-......|.++.|...|+++|+..|+
T Consensus 481 E~~LgdtdRaRaifelAi~qp~l-dmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h 539 (677)
T KOG1915|consen 481 ETSLGDTDRARAIFELAISQPAL-DMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQH 539 (677)
T ss_pred HHHhhhHHHHHHHHHHHhcCccc-ccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhccc
Confidence 77777777777777777765321 23333 334455566777777777777777777654
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=7.3e-10 Score=113.79 Aligned_cols=139 Identities=13% Similarity=0.012 Sum_probs=115.3
Q ss_pred hHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHH
Q 013299 271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQ--------RKLNAAHYYAKM 342 (446)
Q Consensus 271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~--------~~~~~A~~~~~~ 342 (446)
+...+..|..+.... ..+.+.+|+.+|++|+ +++|+++.++-.++.++... .++..+....++
T Consensus 339 Ay~~~lrg~~~~~~~--------~~~~~~~A~~lle~Ai-~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 339 ALTLFYQAHHYLNSG--------DAKSLNKASDLLEEIL-KSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred HHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 444555565554332 1346789999999999 99999999999998887654 245677777888
Q ss_pred HHhh--cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Q 013299 343 LLKL--EGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQV 420 (446)
Q Consensus 343 al~l--~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~ 420 (446)
++.+ +|.++ .++..+|.++...|++++|...+++|++++| + ..+|..+|.++...|++++|++.|++++.++|.
T Consensus 410 a~al~~~~~~~-~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p--s-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 410 IVALPELNVLP-RIYEILAVQALVKGKTDEAYQAINKAIDLEM--S-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred hhhcccCcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 7775 77775 8899999999999999999999999999999 4 789999999999999999999999999999987
Q ss_pred hh
Q 013299 421 QT 422 (446)
Q Consensus 421 ~~ 422 (446)
.+
T Consensus 486 ~p 487 (517)
T PRK10153 486 EN 487 (517)
T ss_pred Cc
Confidence 43
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=99.15 E-value=7.6e-10 Score=90.88 Aligned_cols=105 Identities=18% Similarity=0.076 Sum_probs=92.1
Q ss_pred HHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC
Q 013299 272 TANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRD---LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEG 348 (446)
Q Consensus 272 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~---~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P 348 (446)
..++.+|..+.. .|++++|+..|++++ ..+|++ +.+++.+|.++...|++++|+.+|++++...|
T Consensus 3 ~~~~~~~~~~~~-----------~~~~~~A~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 70 (119)
T TIGR02795 3 EAYYDAALLVLK-----------AGDYADAIQAFQAFL-KKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYP 70 (119)
T ss_pred HHHHHHHHHHHH-----------cCCHHHHHHHHHHHH-HHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCC
Confidence 356677777654 467899999999999 999987 57999999999999999999999999999999
Q ss_pred CCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHH
Q 013299 349 GSN--LKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGEL 390 (446)
Q Consensus 349 ~~~--~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 390 (446)
+++ ..++..+|.++..+|++++|+.+++++++..| ++..+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~ 112 (119)
T TIGR02795 71 KSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYP--GSSAA 112 (119)
T ss_pred CCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCc--CChhH
Confidence 852 26899999999999999999999999999999 66543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.4e-11 Score=88.64 Aligned_cols=68 Identities=22% Similarity=0.213 Sum_probs=63.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCC-ChHHHHHHHHHHhcCCCCC
Q 013299 159 WDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAG-EDLVALNLLRTLLSGSEDP 228 (446)
Q Consensus 159 ~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~eA~~~~~~al~~~~~P 228 (446)
+++.+|..+|.++...|++++|+..|+++++++|+++.+|+++|.++..+| ++++|+..+++++ +++|
T Consensus 1 e~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al--~l~P 69 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL--KLDP 69 (69)
T ss_dssp TSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH--HHST
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH--HcCc
Confidence 367889999999999999999999999999999999999999999999999 7999999999999 8888
|
... |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=99.13 E-value=3e-09 Score=91.23 Aligned_cols=115 Identities=22% Similarity=0.152 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC--HHHHHHHHHHHHHccCHHHH
Q 013299 297 RQAKALQALVSAARSTNMRD---LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN--LKGWLLMARILSAQKRYEDA 371 (446)
Q Consensus 297 ~~~eAl~~~~~al~~~~P~~---~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~--~~~~~~la~~~~~~g~~~eA 371 (446)
...++...+++.+ .-+|+. ..+.+.+|.++...|++++|+..|++++...|+.. ..++..+|.++..+|+|++|
T Consensus 26 ~~~~~~~~~~~l~-~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~A 104 (145)
T PF09976_consen 26 DPAKAEAAAEQLA-KDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEA 104 (145)
T ss_pred CHHHHHHHHHHHH-HHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 4567777899999 999999 56778899999999999999999999999887652 14788899999999999999
Q ss_pred HHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 013299 372 ETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLL 415 (446)
Q Consensus 372 ~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l 415 (446)
+..++.. ...+ -.+.++..+|.++..+|++++|+..|+++|
T Consensus 105 l~~L~~~-~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 105 LATLQQI-PDEA--FKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHhc-cCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 9999773 2233 357788899999999999999999999875
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.12 E-value=7.5e-07 Score=89.66 Aligned_cols=213 Identities=13% Similarity=0.050 Sum_probs=150.6
Q ss_pred CCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChH-----HHHHHHHHHhcCCCCHHHHHHHHHHHHHHc
Q 013299 188 LPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLP-----ALLIASKICGEYPDLAEEGATFASRALECL 262 (446)
Q Consensus 188 l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~-----a~~~~~~~~~~~~~~~~eA~~~~~~al~~~ 262 (446)
+..+|++.+.|.....++ .|+..+-+..|.+|++ ..+|.-+. .+...+.+ |...|+.+.|...++++++.
T Consensus 342 LRQn~~nV~eW~kRV~l~--e~~~~~~i~tyteAv~-~vdP~ka~Gs~~~Lw~~fakl-Ye~~~~l~~aRvifeka~~V- 416 (835)
T KOG2047|consen 342 LRQNPHNVEEWHKRVKLY--EGNAAEQINTYTEAVK-TVDPKKAVGSPGTLWVEFAKL-YENNGDLDDARVIFEKATKV- 416 (835)
T ss_pred HhcCCccHHHHHhhhhhh--cCChHHHHHHHHHHHH-ccCcccCCCChhhHHHHHHHH-HHhcCcHHHHHHHHHHhhcC-
Confidence 445777777777666553 5778888888888886 67876432 34445554 56678888999999988873
Q ss_pred CCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCH-------------------HHHHHH
Q 013299 263 GDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDL-------------------SILYRL 323 (446)
Q Consensus 263 ~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~-------------------~a~~~l 323 (446)
|=..-...+.+|...|..- .+..+++.|+.++++|+ .-|.++ .+|..+
T Consensus 417 ~y~~v~dLa~vw~~waemE-----------lrh~~~~~Al~lm~~A~--~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y 483 (835)
T KOG2047|consen 417 PYKTVEDLAEVWCAWAEME-----------LRHENFEAALKLMRRAT--HVPTNPELEYYDNSEPVQARLHRSLKIWSMY 483 (835)
T ss_pred CccchHHHHHHHHHHHHHH-----------HhhhhHHHHHHHHHhhh--cCCCchhhhhhcCCCcHHHHHHHhHHHHHHH
Confidence 3111122345555555322 23467889999999988 455553 345556
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHH---HHHHHHH
Q 013299 324 SLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRT---KAKVQLV 400 (446)
Q Consensus 324 g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~---~a~~~~~ 400 (446)
+......|-++.....|++.+.|.=-.| ....|.|..+....-|+++.++|++.+.++|-+.-.++|.. +..--..
T Consensus 484 ~DleEs~gtfestk~vYdriidLriaTP-qii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ryg 562 (835)
T KOG2047|consen 484 ADLEESLGTFESTKAVYDRIIDLRIATP-QIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYG 562 (835)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhc
Confidence 6666667888888899999999887775 88899999999999999999999999998752245666643 3333344
Q ss_pred hCCHHHHHHHHHHHHHHHh
Q 013299 401 QGQLKGAVETYTHLLAALQ 419 (446)
Q Consensus 401 ~g~~~eA~~~~~~~l~l~~ 419 (446)
--+.+.|...|+++|+..|
T Consensus 563 g~klEraRdLFEqaL~~Cp 581 (835)
T KOG2047|consen 563 GTKLERARDLFEQALDGCP 581 (835)
T ss_pred CCCHHHHHHHHHHHHhcCC
Confidence 4567899999999999886
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=99.12 E-value=9.2e-10 Score=85.00 Aligned_cols=98 Identities=19% Similarity=0.152 Sum_probs=89.7
Q ss_pred HHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCH
Q 013299 273 ANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNL 352 (446)
Q Consensus 273 a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~ 352 (446)
+++.+|.++.. .|++++|+..+++++ +..|+++.+++.+|.++...+++++|+..+++++...|.++
T Consensus 2 ~~~~~a~~~~~-----------~~~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~- 68 (100)
T cd00189 2 ALLNLGNLYYK-----------LGDYDEALEYYEKAL-ELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA- 68 (100)
T ss_pred HHHHHHHHHHH-----------HhcHHHHHHHHHHHH-hcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch-
Confidence 35566666654 367899999999999 99999999999999999999999999999999999999985
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013299 353 KGWLLMARILSAQKRYEDAETILNAALDQTG 383 (446)
Q Consensus 353 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 383 (446)
.++..+|.++...|++++|..+++++++..|
T Consensus 69 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 69 KAYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 8999999999999999999999999999887
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.6e-09 Score=103.18 Aligned_cols=180 Identities=12% Similarity=0.055 Sum_probs=124.8
Q ss_pred hcCCCCH---HHH----HHHHHHHHhcCC---HHHHHHHHHhhC---CCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 013299 155 KRIEWDP---SIL----DHLSFAFSIAGD---LSSLATQIEELL---PGIINRKERYHILALCYYGAGEDLVALNLLRTL 221 (446)
Q Consensus 155 ~~~p~~~---~~~----~~lg~~l~~~~~---~~~A~~~~~~al---~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~a 221 (446)
...|.+. ++| ++.|......+. .+.|+..|.+++ +++|+.+.+|-.++.|++..- .
T Consensus 242 r~~~~~l~~~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~-----------~ 310 (458)
T PRK11906 242 RLAKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLA-----------L 310 (458)
T ss_pred cCCCCCcccccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHH-----------H
Confidence 3446666 555 556666655543 357777888888 888888888888888776530 0
Q ss_pred hcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHH
Q 013299 222 LSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKA 301 (446)
Q Consensus 222 l~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA 301 (446)
. ...+ ......+|....++|++..+.+ +.++..+|.++... ++++.|
T Consensus 311 ~--g~~~---------------~~~~~~~a~~~A~rAveld~~D-----a~a~~~~g~~~~~~-----------~~~~~a 357 (458)
T PRK11906 311 H--GKSE---------------LELAAQKALELLDYVSDITTVD-----GKILAIMGLITGLS-----------GQAKVS 357 (458)
T ss_pred h--cCCC---------------chHHHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHhh-----------cchhhH
Confidence 0 0000 0112234555555555533222 44555555544332 357899
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHH-HHHccCHHHHHHHHHHHHh
Q 013299 302 LQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARI-LSAQKRYEDAETILNAALD 380 (446)
Q Consensus 302 l~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~-~~~~g~~~eA~~~~~~al~ 380 (446)
+..|++|+ .++|+.+.+|+..|+++.-.|+.++|...+++|++++|--. .+-...-++ .+.....++|+..|-+-.+
T Consensus 358 ~~~f~rA~-~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (458)
T PRK11906 358 HILFEQAK-IHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRR-KAVVIKECVDMYVPNPLKNNIKLYYKETE 435 (458)
T ss_pred HHHHHHHh-hcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhh-HHHHHHHHHHHHcCCchhhhHHHHhhccc
Confidence 99999999 99999999999999999999999999999999999999973 555555555 6777889999988866544
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.3e-09 Score=104.75 Aligned_cols=121 Identities=21% Similarity=0.025 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHH
Q 013299 294 RATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAET 373 (446)
Q Consensus 294 ~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~ 373 (446)
..+++++|+..++..+ ...|+|+-.+-..|.++.+.++.++|.+.+++++.++|+.+ ..+.++|..|++.|++++|+.
T Consensus 318 ~~~~~d~A~~~l~~L~-~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~-~l~~~~a~all~~g~~~eai~ 395 (484)
T COG4783 318 LAGQYDEALKLLQPLI-AAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSP-LLQLNLAQALLKGGKPQEAIR 395 (484)
T ss_pred HhcccchHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc-HHHHHHHHHHHhcCChHHHHH
Confidence 4577899999999999 99999999999999999999999999999999999999995 999999999999999999999
Q ss_pred HHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 013299 374 ILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAAL 418 (446)
Q Consensus 374 ~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~ 418 (446)
.++..+..+| +++..|..+|..+..+|+..+|...+...+.+.
T Consensus 396 ~L~~~~~~~p--~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~ 438 (484)
T COG4783 396 ILNRYLFNDP--EDPNGWDLLAQAYAELGNRAEALLARAEGYALA 438 (484)
T ss_pred HHHHHhhcCC--CCchHHHHHHHHHHHhCchHHHHHHHHHHHHhC
Confidence 9999999999 999999999999999999999999988877765
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.1e-09 Score=107.64 Aligned_cols=154 Identities=14% Similarity=0.064 Sum_probs=110.2
Q ss_pred hhCCCCCCcHHHHHH--HHHHHHHCCC---hHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 013299 186 ELLPGIINRKERYHI--LALCYYGAGE---DLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALE 260 (446)
Q Consensus 186 ~al~~~p~~~~~~~~--lg~~~~~~g~---~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~ 260 (446)
++...-|.++++|-. .|.-+...++ ...|+.+|++|+ +++|++..++..++..+....+
T Consensus 328 ~~~~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai--~ldP~~a~a~A~la~~~~~~~~-------------- 391 (517)
T PRK10153 328 RLQQGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEIL--KSEPDFTYAQAEKALADIVRHS-------------- 391 (517)
T ss_pred HHhccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH--HhCCCcHHHHHHHHHHHHHHHh--------------
Confidence 334455666665533 4555555444 667888888888 7888887776544322111000
Q ss_pred HcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHH
Q 013299 261 CLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARST--NMRDLSILYRLSLEYAEQRKLNAAHY 338 (446)
Q Consensus 261 ~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~--~P~~~~a~~~lg~~~~~~~~~~~A~~ 338 (446)
..+.+ ....+.+....++++ .+ +|.++.++..+|..+...|++++|..
T Consensus 392 -~~~~~----------------------------~~~l~~a~~~~~~a~-al~~~~~~~~~~~ala~~~~~~g~~~~A~~ 441 (517)
T PRK10153 392 -QQPLD----------------------------EKQLAALSTELDNIV-ALPELNVLPRIYEILAVQALVKGKTDEAYQ 441 (517)
T ss_pred -cCCcc----------------------------HHHHHHHHHHHHHhh-hcccCcCChHHHHHHHHHHHhcCCHHHHHH
Confidence 00100 123456667777777 64 88889999999999999999999999
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHH
Q 013299 339 YAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGE 389 (446)
Q Consensus 339 ~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~ 389 (446)
.+++|+.++|+ +.+|..+|.++...|++++|+..|++|+.++| .++.
T Consensus 442 ~l~rAl~L~ps--~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P--~~pt 488 (517)
T PRK10153 442 AINKAIDLEMS--WLNYVLLGKVYELKGDNRLAADAYSTAFNLRP--GENT 488 (517)
T ss_pred HHHHHHHcCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CCch
Confidence 99999999994 48999999999999999999999999999999 5544
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.3e-08 Score=94.86 Aligned_cols=201 Identities=12% Similarity=-0.007 Sum_probs=131.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHH---HHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHH--
Q 013299 159 WDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERY---HILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPA-- 233 (446)
Q Consensus 159 ~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~---~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a-- 233 (446)
.++..++..|..+...|++++|++.|++++...|+.+.+. +.+|.++++.+++++|+..|++.+ +.+|+++.+
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi--~~~P~~~~~~~ 107 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFI--RLNPTHPNIDY 107 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH--HhCcCCCchHH
Confidence 3566677888888888999999999999988888887665 888899999999999999999999 788887653
Q ss_pred -HHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhh
Q 013299 234 -LLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARST 312 (446)
Q Consensus 234 -~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~ 312 (446)
++..| ++....+. ..+..... .+. .. .......+|+..|++.+ +.
T Consensus 108 a~Y~~g-~~~~~~~~-----~~~~~~~~-~~~---------------~~-----------rD~~~~~~A~~~~~~li-~~ 153 (243)
T PRK10866 108 VLYMRG-LTNMALDD-----SALQGFFG-VDR---------------SD-----------RDPQHARAAFRDFSKLV-RG 153 (243)
T ss_pred HHHHHH-Hhhhhcch-----hhhhhccC-CCc---------------cc-----------cCHHHHHHHHHHHHHHH-HH
Confidence 23222 21111110 00000000 000 00 00123467889999999 89
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCC-CcHHHH
Q 013299 313 NMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKW-EQGELL 391 (446)
Q Consensus 313 ~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~~ 391 (446)
.|+..- ..+|....... .-.- +.--+..|..|.+.|+|.-|+.-++.+++..|+. ...+++
T Consensus 154 yP~S~y--------------a~~A~~rl~~l---~~~l-a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal 215 (243)
T PRK10866 154 YPNSQY--------------TTDATKRLVFL---KDRL-AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDAL 215 (243)
T ss_pred CcCChh--------------HHHHHHHHHHH---HHHH-HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHH
Confidence 998753 12222222111 1111 1333356778888888888888888888888731 246788
Q ss_pred HHHHHHHHHhCCHHHHHHHHHH
Q 013299 392 RTKAKVQLVQGQLKGAVETYTH 413 (446)
Q Consensus 392 ~~~a~~~~~~g~~~eA~~~~~~ 413 (446)
+.++.++..+|..++|....+.
T Consensus 216 ~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 216 PLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHHHHcCChHHHHHHHHH
Confidence 8888888888888888776653
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.8e-09 Score=95.05 Aligned_cols=101 Identities=22% Similarity=0.117 Sum_probs=85.3
Q ss_pred hhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 013299 270 ESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRD---LSILYRLSLEYAEQRKLNAAHYYAKMLLKL 346 (446)
Q Consensus 270 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~---~~a~~~lg~~~~~~~~~~~A~~~~~~al~l 346 (446)
....++.+|.++... +++++|+..|++++ .+.|+. +.+++++|.++...|++++|+..|++++.+
T Consensus 34 ~a~~~~~~g~~~~~~-----------g~~~~A~~~~~~al-~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 34 EAFTYYRDGMSAQSE-----------GEYAEALQNYYEAM-RLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-hccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 466788888888654 57899999999999 998774 458999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHH-------HccCHH-------HHHHHHHHHHhhcC
Q 013299 347 EGGSNLKGWLLMARILS-------AQKRYE-------DAETILNAALDQTG 383 (446)
Q Consensus 347 ~P~~~~~~~~~la~~~~-------~~g~~~-------eA~~~~~~al~~~p 383 (446)
+|.+ ...+.++|.++. .+|+++ +|+.++++++..+|
T Consensus 102 ~~~~-~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p 151 (168)
T CHL00033 102 NPFL-PQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAP 151 (168)
T ss_pred CcCc-HHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCc
Confidence 9999 599999999999 677766 55555666777777
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.1e-10 Score=83.92 Aligned_cols=64 Identities=23% Similarity=0.230 Sum_probs=59.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCCh
Q 013299 166 HLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCL 231 (446)
Q Consensus 166 ~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~ 231 (446)
.+|.++...|++++|+..|+++++.+|+++++|+.+|.++..+|++++|+..|++++ +.+|++|
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~--~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERAL--ELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH--HHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHCcCCC
Confidence 578999999999999999999999999999999999999999999999999999999 8999885
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.9e-10 Score=86.50 Aligned_cols=82 Identities=22% Similarity=0.247 Sum_probs=52.2
Q ss_pred cCCHHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHH
Q 013299 330 QRKLNAAHYYAKMLLKLEGGS-NLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAV 408 (446)
Q Consensus 330 ~~~~~~A~~~~~~al~l~P~~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~ 408 (446)
+|++++|+..|+++++.+|.+ ....|+.+|.+++.+|+|++|+.++++ ++.+| .+...++.+|.++.++|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~--~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP--SNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH--CHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC--CCHHHHHHHHHHHHHhCCHHHHH
Confidence 566677777777777766632 125566667777777777777777766 66666 56666666677777777777777
Q ss_pred HHHHHH
Q 013299 409 ETYTHL 414 (446)
Q Consensus 409 ~~~~~~ 414 (446)
+.++++
T Consensus 79 ~~l~~~ 84 (84)
T PF12895_consen 79 KALEKA 84 (84)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 666653
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.7e-10 Score=81.58 Aligned_cols=62 Identities=27% Similarity=0.382 Sum_probs=47.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013299 321 YRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTG 383 (446)
Q Consensus 321 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 383 (446)
+.+|..+...|++++|+..|+++++.+|++ ..+|..+|.++..+|++++|+.+|+++++.+|
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~-~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDN-PEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTH-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 456777777888888888888888888877 47888888888888888888888888887777
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=6.2e-07 Score=80.44 Aligned_cols=207 Identities=27% Similarity=0.193 Sum_probs=170.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhhCC--CCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHH
Q 013299 160 DPSILDHLSFAFSIAGDLSSLATQIEELLP--GIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIA 237 (446)
Q Consensus 160 ~~~~~~~lg~~l~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~ 237 (446)
........+..+...+++..+...+...+. ..+.....++.+|..+...+.+.+++..+.+++ ..+|++.......
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 135 (291)
T COG0457 58 LAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKAL--ALDPDPDLAEALL 135 (291)
T ss_pred chHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHH--cCCCCcchHHHHH
Confidence 367888999999999999999999999997 789999999999999999999999999999999 7777764444333
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCC-C
Q 013299 238 SKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMR-D 316 (446)
Q Consensus 238 ~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~-~ 316 (446)
...++...+++++|+..+++++. ..+.. ..........+..+. ..+.+++|+..+.+++ ...|. .
T Consensus 136 ~~~~~~~~~~~~~a~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~-----------~~~~~~~a~~~~~~~~-~~~~~~~ 201 (291)
T COG0457 136 ALGALYELGDYEEALELYEKALE-LDPEL-NELAEALLALGALLE-----------ALGRYEEALELLEKAL-KLNPDDD 201 (291)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh-cCCCc-cchHHHHHHhhhHHH-----------HhcCHHHHHHHHHHHH-hhCcccc
Confidence 33145567999999999999987 44310 011233333333322 2457899999999999 99999 7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013299 317 LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTG 383 (446)
Q Consensus 317 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 383 (446)
..++..++..+...+++++|+..+.+++...|+. ...+..++.++...++++++...+.+++...|
T Consensus 202 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 202 AEALLNLGLLYLKLGKYEEALEYYEKALELDPDN-AEALYNLALLLLELGRYEEALEALEKALELDP 267 (291)
T ss_pred hHHHHHhhHHHHHcccHHHHHHHHHHHHhhCccc-HHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 9999999999999999999999999999999986 47888888888877889999999999999998
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.8e-10 Score=86.09 Aligned_cols=80 Identities=25% Similarity=0.253 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHH
Q 013299 296 TRQAKALQALVSAARSTNMR--DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAET 373 (446)
Q Consensus 296 ~~~~eAl~~~~~al~~~~P~--~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~ 373 (446)
+++++|+..|++++ +.+|+ +...++.+|.++.++|++++|+..+++ ...+|.+ ..+++.+|.++..+|+|++|+.
T Consensus 3 ~~y~~Ai~~~~k~~-~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~-~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 3 GNYENAIKYYEKLL-ELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSN-PDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp T-HHHHHHHHHHHH-HHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCH-HHHHHHHHHHHHHTT-HHHHHH
T ss_pred ccHHHHHHHHHHHH-HHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCC-HHHHHHHHHHHHHhCCHHHHHH
Confidence 57899999999999 99995 577888999999999999999999999 8999988 5888999999999999999999
Q ss_pred HHHHH
Q 013299 374 ILNAA 378 (446)
Q Consensus 374 ~~~~a 378 (446)
+++++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 99875
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=6.5e-08 Score=90.14 Aligned_cols=191 Identities=14% Similarity=-0.024 Sum_probs=130.4
Q ss_pred CcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHH---HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh
Q 013299 193 NRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPAL---LIASKICGEYPDLAEEGATFASRALECLGDGCDQM 269 (446)
Q Consensus 193 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~---~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~ 269 (446)
..+..+|..|..++..|+|++|+..|++++ ...|+.+.+. +.+|..++. .+++++|+..+++.++..|.++.
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~--~~yP~s~~a~~a~l~la~ayy~-~~~y~~A~~~~e~fi~~~P~~~~-- 104 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALD--NRYPFGPYSQQVQLDLIYAYYK-NADLPLAQAAIDRFIRLNPTHPN-- 104 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH--HhCCCChHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCcCCCc--
Confidence 467789999999999999999999999999 8999987654 666666555 78999999999999997776653
Q ss_pred hhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 013299 270 ESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG 349 (446)
Q Consensus 270 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~ 349 (446)
...+++.+|.++...+. ..+..-. .+++.+ ..+....+|+..|++.+..-|+
T Consensus 105 ~~~a~Y~~g~~~~~~~~----------------~~~~~~~-~~~~~~-----------rD~~~~~~A~~~~~~li~~yP~ 156 (243)
T PRK10866 105 IDYVLYMRGLTNMALDD----------------SALQGFF-GVDRSD-----------RDPQHARAAFRDFSKLVRGYPN 156 (243)
T ss_pred hHHHHHHHHHhhhhcch----------------hhhhhcc-CCCccc-----------cCHHHHHHHHHHHHHHHHHCcC
Confidence 46788888887543211 1111111 222211 1233457899999999999999
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhccCCc
Q 013299 350 SNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDK 429 (446)
Q Consensus 350 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~~~~~~ 429 (446)
+. - ..+|...+...- - .-..--+..|..+.+.|++..|+..++.+++-.|+.......--
T Consensus 157 S~-y--------------a~~A~~rl~~l~---~--~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~ 216 (243)
T PRK10866 157 SQ-Y--------------TTDATKRLVFLK---D--RLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALP 216 (243)
T ss_pred Ch-h--------------HHHHHHHHHHHH---H--HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHH
Confidence 73 2 122222222111 1 11222346788888999999999999999999988665544433
Q ss_pred chhhHHh
Q 013299 430 RFYKVYF 436 (446)
Q Consensus 430 ~~~~~~~ 436 (446)
-.-.+|.
T Consensus 217 ~l~~ay~ 223 (243)
T PRK10866 217 LMENAYR 223 (243)
T ss_pred HHHHHHH
Confidence 3333333
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.7e-08 Score=90.35 Aligned_cols=189 Identities=18% Similarity=0.146 Sum_probs=109.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCc---HHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHH
Q 013299 160 DPSILDHLSFAFSIAGDLSSLATQIEELLPGIINR---KERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLI 236 (446)
Q Consensus 160 ~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~ 236 (446)
+++.++..|..+...|++.+|+..|++++...|++ +.+.+.+|.+++..|++++|+..|++.+ +..|+++.+
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi--~~yP~~~~~--- 78 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFI--KLYPNSPKA--- 78 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH--HH-TT-TTH---
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHCCCCcch---
Confidence 44555666666666666666666666665554433 3456666666666666666666666666 556655432
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCC
Q 013299 237 ASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRD 316 (446)
Q Consensus 237 ~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~ 316 (446)
..+++.+|.++..+...........+...+|+..|+..+ ...|++
T Consensus 79 ----------------------------------~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li-~~yP~S 123 (203)
T PF13525_consen 79 ----------------------------------DYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELI-KRYPNS 123 (203)
T ss_dssp ----------------------------------HHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHH-HH-TTS
T ss_pred ----------------------------------hhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHH-HHCcCc
Confidence 234444444443332211000012345789999999999 999997
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCc---HHHHHH
Q 013299 317 LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQ---GELLRT 393 (446)
Q Consensus 317 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~---~~~~~~ 393 (446)
+-+ .+|......+-. .- +.--+..|..+.+.|+|..|+..++.+++..| +. .+++..
T Consensus 124 ~y~--------------~~A~~~l~~l~~---~l-a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp--~t~~~~~al~~ 183 (203)
T PF13525_consen 124 EYA--------------EEAKKRLAELRN---RL-AEHELYIARFYYKRGKYKAAIIRFQYVIENYP--DTPAAEEALAR 183 (203)
T ss_dssp TTH--------------HHHHHHHHHHHH---HH-HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHST--TSHHHHHHHHH
T ss_pred hHH--------------HHHHHHHHHHHH---HH-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC--CCchHHHHHHH
Confidence 532 333333322211 11 23344578889999999999999999999988 53 567888
Q ss_pred HHHHHHHhCCHHHHH
Q 013299 394 KAKVQLVQGQLKGAV 408 (446)
Q Consensus 394 ~a~~~~~~g~~~eA~ 408 (446)
++.++..+|..+.|-
T Consensus 184 l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 184 LAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHTT-HHHHH
T ss_pred HHHHHHHhCChHHHH
Confidence 999999999988443
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.4e-09 Score=91.29 Aligned_cols=108 Identities=14% Similarity=0.130 Sum_probs=97.7
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCC
Q 013299 305 LVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGK 384 (446)
Q Consensus 305 ~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~ 384 (446)
++.+. .+.++..+..|..|.-++.+|++++|+..|+-....+|.++ ..|+.||.++..+|+|++|+..|..|..+.+
T Consensus 26 lk~l~-gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~-~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~- 102 (165)
T PRK15331 26 LKDVH-GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNP-DYTMGLAAVCQLKKQFQKACDLYAVAFTLLK- 102 (165)
T ss_pred HHHHh-CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-
Confidence 34455 67777888899999999999999999999999999999994 9999999999999999999999999999988
Q ss_pred CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 013299 385 WEQGELLRTKAKVQLVQGQLKGAVETYTHLLA 416 (446)
Q Consensus 385 ~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~ 416 (446)
+++...|+.|.+++.+|+.+.|..+|..+++
T Consensus 103 -~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 103 -NDYRPVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred -CCCCccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 8889999999999999999999999999888
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.99 E-value=9.4e-09 Score=84.33 Aligned_cols=98 Identities=21% Similarity=0.180 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCC---cHHHH
Q 013299 317 LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN--LKGWLLMARILSAQKRYEDAETILNAALDQTGKWE---QGELL 391 (446)
Q Consensus 317 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~--~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~---~~~~~ 391 (446)
|.++|.+|.++...|+.++|+..|++++...++.+ ..++..+|..+..+|++++|+..+++++...| + +..+.
T Consensus 1 ~~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p--~~~~~~~l~ 78 (120)
T PF12688_consen 1 PRALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFP--DDELNAALR 78 (120)
T ss_pred CchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC--CccccHHHH
Confidence 46789999999999999999999999999765431 36889999999999999999999999999988 6 67778
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH
Q 013299 392 RTKAKVQLVQGQLKGAVETYTHLLA 416 (446)
Q Consensus 392 ~~~a~~~~~~g~~~eA~~~~~~~l~ 416 (446)
..++.++...|+.++|++.+-.++.
T Consensus 79 ~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 79 VFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8899999999999999999877664
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.3e-06 Score=78.26 Aligned_cols=224 Identities=23% Similarity=0.178 Sum_probs=185.3
Q ss_pred cCCHHHHHHHHHhhCCCCCC--cHHHHHHHHHHHHHCCChHHHHHHHHHHhcCC--CCCCChHHHHHHHHHHhcCCCCHH
Q 013299 174 AGDLSSLATQIEELLPGIIN--RKERYHILALCYYGAGEDLVALNLLRTLLSGS--EDPKCLPALLIASKICGEYPDLAE 249 (446)
Q Consensus 174 ~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--~~P~~~~a~~~~~~~~~~~~~~~~ 249 (446)
.+.+..+...+...+...+. ........+..+...+++..+...+...+ . ..|.....+...+.. ....+.+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~ 112 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKAL--ELELLPNLAEALLNLGLL-LEALGKYE 112 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHH--hhhhccchHHHHHHHHHH-HHHHhhHH
Confidence 56778888899999998887 48889999999999999999999999998 6 577777776665554 44467788
Q ss_pred HHHHHHHHHHHHcCCCcchhhhHHHHHhhc-hhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCC---CCHHHHHHHHH
Q 013299 250 EGATFASRALECLGDGCDQMESTANCLLGI-SLSAQSKVAITDFDRATRQAKALQALVSAARSTNM---RDLSILYRLSL 325 (446)
Q Consensus 250 eA~~~~~~al~~~~~~~~~~~~~a~~~lg~-~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P---~~~~a~~~lg~ 325 (446)
+++..+.+++...+.. .......+. ++.. .+++++|+..|.+++ ..+| ........++.
T Consensus 113 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-----------~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~ 175 (291)
T COG0457 113 EALELLEKALALDPDP-----DLAEALLALGALYE-----------LGDYEEALELYEKAL-ELDPELNELAEALLALGA 175 (291)
T ss_pred HHHHHHHHHHcCCCCc-----chHHHHHHHHHHHH-----------cCCHHHHHHHHHHHH-hcCCCccchHHHHHHhhh
Confidence 9999999999843332 122333333 4433 467899999999999 8888 46677778888
Q ss_pred HHHHcCCHHHHHHHHHHHHhhcCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCH
Q 013299 326 EYAEQRKLNAAHYYAKMLLKLEGG-SNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQL 404 (446)
Q Consensus 326 ~~~~~~~~~~A~~~~~~al~l~P~-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~ 404 (446)
.+...+++++|+..+.+++...|. .. ..+..++..+...+++++|+..+.+++...| +....+...+..+...|..
T Consensus 176 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 252 (291)
T COG0457 176 LLEALGRYEEALELLEKALKLNPDDDA-EALLNLGLLYLKLGKYEEALEYYEKALELDP--DNAEALYNLALLLLELGRY 252 (291)
T ss_pred HHHHhcCHHHHHHHHHHHHhhCcccch-HHHHHhhHHHHHcccHHHHHHHHHHHHhhCc--ccHHHHhhHHHHHHHcCCH
Confidence 888999999999999999999999 64 8999999999999999999999999999999 6667778888888888889
Q ss_pred HHHHHHHHHHHHHHhh
Q 013299 405 KGAVETYTHLLAALQV 420 (446)
Q Consensus 405 ~eA~~~~~~~l~l~~~ 420 (446)
+++...+.+++...|.
T Consensus 253 ~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 253 EEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHHHhCcc
Confidence 9999999999999875
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.6e-08 Score=91.49 Aligned_cols=215 Identities=15% Similarity=0.065 Sum_probs=160.8
Q ss_pred HhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHH
Q 013299 172 SIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEG 251 (446)
Q Consensus 172 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA 251 (446)
.+..+++.||+++..-.+.+|.+..+...||-||+...+|.+|-.+|++.- .+.|+.....++-+...+. -+.+.+|
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~--ql~P~~~qYrlY~AQSLY~-A~i~ADA 97 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLG--QLHPELEQYRLYQAQSLYK-ACIYADA 97 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhChHHHHHHHHHHHHHHH-hcccHHH
Confidence 445689999999999999999999999999999999999999999999999 8999988776666666665 4677777
Q ss_pred HHHHHHHHHHcCCCcchhhhHHHH-HhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHH
Q 013299 252 ATFASRALECLGDGCDQMESTANC-LLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNM--RDLSILYRLSLEYA 328 (446)
Q Consensus 252 ~~~~~~al~~~~~~~~~~~~~a~~-~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P--~~~~a~~~lg~~~~ 328 (446)
+....... ++ +.+.....- .-++.|.. +++.. -+..+ +.-| ++++...+.|.+++
T Consensus 98 LrV~~~~~----D~-~~L~~~~lqLqaAIkYse------------~Dl~g----~rsLv-eQlp~en~Ad~~in~gClly 155 (459)
T KOG4340|consen 98 LRVAFLLL----DN-PALHSRVLQLQAAIKYSE------------GDLPG----SRSLV-EQLPSENEADGQINLGCLLY 155 (459)
T ss_pred HHHHHHhc----CC-HHHHHHHHHHHHHHhccc------------ccCcc----hHHHH-HhccCCCccchhccchheee
Confidence 76554332 22 112222111 11122211 11222 24445 5556 78999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH----hhcCCC--------------Cc---
Q 013299 329 EQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAAL----DQTGKW--------------EQ--- 387 (446)
Q Consensus 329 ~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al----~~~p~~--------------~~--- 387 (446)
+.|++++|++-|+.|++...-+| ..-++++.+++..|+|+.|+++....+ +..|.- .|
T Consensus 156 kegqyEaAvqkFqaAlqvsGyqp-llAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~ 234 (459)
T KOG4340|consen 156 KEGQYEAAVQKFQAALQVSGYQP-LLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLV 234 (459)
T ss_pred ccccHHHHHHHHHHHHhhcCCCc-hhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHH
Confidence 99999999999999999998886 888899999999999999998766555 445520 01
Q ss_pred ------HHHHHHHHHHHHHhCCHHHHHHHHH
Q 013299 388 ------GELLRTKAKVQLVQGQLKGAVETYT 412 (446)
Q Consensus 388 ------~~~~~~~a~~~~~~g~~~eA~~~~~ 412 (446)
.+++..++.++.+.|+++.|.+.+-
T Consensus 235 lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLt 265 (459)
T KOG4340|consen 235 LHQSALVEAFNLKAAIEYQLRNYEAAQEALT 265 (459)
T ss_pred HHHHHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence 3566778899999999999887653
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.2e-08 Score=95.81 Aligned_cols=106 Identities=10% Similarity=0.115 Sum_probs=77.7
Q ss_pred CHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhhcCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCC-CcHHHH
Q 013299 316 DLSILYRLSLEY-AEQRKLNAAHYYAKMLLKLEGGSN--LKGWLLMARILSAQKRYEDAETILNAALDQTGKW-EQGELL 391 (446)
Q Consensus 316 ~~~a~~~lg~~~-~~~~~~~~A~~~~~~al~l~P~~~--~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~~ 391 (446)
+....|..|..+ ...|++++|+..|++.+...|+++ ..+++.+|.+++.+|+|++|+..|++++..+|+. ..++++
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 445666666665 456788888888888888888762 1577788888888888888888888888777721 146777
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHhhh
Q 013299 392 RTKAKVQLVQGQLKGAVETYTHLLAALQVQ 421 (446)
Q Consensus 392 ~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~ 421 (446)
+.+|.++..+|++++|...|+++++.+|+.
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 778888888888888888888888777543
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=98.93 E-value=1e-07 Score=86.51 Aligned_cols=110 Identities=18% Similarity=0.101 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHc-----------CCHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Q 013299 296 TRQAKALQALVSAARSTNMRDL---SILYRLSLEYAEQ-----------RKLNAAHYYAKMLLKLEGGSNLKGWLLMARI 361 (446)
Q Consensus 296 ~~~~eAl~~~~~al~~~~P~~~---~a~~~lg~~~~~~-----------~~~~~A~~~~~~al~l~P~~~~~~~~~la~~ 361 (446)
+++++|+..|++-+ +..|+++ .+++.+|.++..+ +...+|+..|+..+..-|+++ -
T Consensus 56 ~~y~~A~~~~~~fi-~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~-y-------- 125 (203)
T PF13525_consen 56 GDYEEAIAAYERFI-KLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSE-Y-------- 125 (203)
T ss_dssp T-HHHHHHHHHHHH-HH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTST-T--------
T ss_pred CCHHHHHHHHHHHH-HHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCch-H--------
Confidence 34566666666666 6666554 3556666654433 223355555555555555543 1
Q ss_pred HHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhcc
Q 013299 362 LSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFS 426 (446)
Q Consensus 362 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~~~ 426 (446)
-.+|...+..+-. .-..--+..|..+.+.|.+..|+..|+.+++-.|+....-.
T Consensus 126 ------~~~A~~~l~~l~~-----~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~ 179 (203)
T PF13525_consen 126 ------AEEAKKRLAELRN-----RLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEE 179 (203)
T ss_dssp ------HHHHHHHHHHHHH-----HHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHH
T ss_pred ------HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHH
Confidence 1112111111110 01222356899999999999999999999999998655443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.1e-08 Score=95.90 Aligned_cols=69 Identities=22% Similarity=0.234 Sum_probs=49.0
Q ss_pred HHHHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHH
Q 013299 10 LEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRA 89 (446)
Q Consensus 10 ~~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~a 89 (446)
++.|-..|.+|...|+|++|.+.|.++.+...+. +.+. .-..++...+.+|.+. ++++|+.+|+++
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~---~~~~----------~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A 100 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKL---GDKF----------EAAKAYEEAANCYKKG-DPDEAIECYEKA 100 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHT---T-HH----------HHHHHHHHHHHHHHHT-THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHc---CCHH----------HHHHHHHHHHHHHHhh-CHHHHHHHHHHH
Confidence 5667778889999999999999999988775442 1111 1234556666666555 999999999998
Q ss_pred hCC
Q 013299 90 LLP 92 (446)
Q Consensus 90 l~~ 92 (446)
+.+
T Consensus 101 ~~~ 103 (282)
T PF14938_consen 101 IEI 103 (282)
T ss_dssp HHH
T ss_pred HHH
Confidence 876
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.88 E-value=8.9e-08 Score=92.08 Aligned_cols=145 Identities=12% Similarity=0.077 Sum_probs=105.9
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhh
Q 013299 199 HILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLG 278 (446)
Q Consensus 199 ~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg 278 (446)
-..|..|+..|+|..|...|++|+ ..-+. ...-..++. +++.+ ....++.+++
T Consensus 212 ke~Gn~~fK~gk~~~A~~~Yerav--~~l~~-------------~~~~~~ee~----~~~~~--------~k~~~~lNlA 264 (397)
T KOG0543|consen 212 KERGNVLFKEGKFKLAKKRYERAV--SFLEY-------------RRSFDEEEQ----KKAEA--------LKLACHLNLA 264 (397)
T ss_pred HHhhhHHHhhchHHHHHHHHHHHH--HHhhc-------------cccCCHHHH----HHHHH--------HHHHHhhHHH
Confidence 345888888999999999999988 22111 111111111 11111 1235788888
Q ss_pred chhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHH
Q 013299 279 ISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLM 358 (446)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~l 358 (446)
.|+.+. +.+.+|+....++| +++|+|..++|..|.++..+|+++.|+..|+++++++|+| -.+...+
T Consensus 265 ~c~lKl-----------~~~~~Ai~~c~kvL-e~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~N-ka~~~el 331 (397)
T KOG0543|consen 265 ACYLKL-----------KEYKEAIESCNKVL-ELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSN-KAARAEL 331 (397)
T ss_pred HHHHhh-----------hhHHHHHHHHHHHH-hcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCc-HHHHHHH
Confidence 888664 56889999999999 9999999999999999999999999999999999999998 4888888
Q ss_pred HHHHHHccCHHHH-HHHHHHHHhhcC
Q 013299 359 ARILSAQKRYEDA-ETILNAALDQTG 383 (446)
Q Consensus 359 a~~~~~~g~~~eA-~~~~~~al~~~p 383 (446)
..+-.+..++.+. -..|.+.+..-+
T Consensus 332 ~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 332 IKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 8887777776655 567777775433
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.87 E-value=8.2e-06 Score=77.01 Aligned_cols=364 Identities=15% Similarity=0.059 Sum_probs=207.6
Q ss_pred HHHHHHHHhhhhcccChHHHHHHHHHHHH------HHHh-hhcCCCCCCCC-ccccHHHHHHHHHHHhHHHHHHhCChHH
Q 013299 10 LEAIFLKAKCLQGLGRFKEAAQSCKVILD------IVES-SFAEGFPENLG-ADCKLQETLNRAVELLPELWKLADAPRE 81 (446)
Q Consensus 10 ~~~~~~~g~~~~~~g~~eeA~~~~~~~l~------~~~~-~~~~~~~~~~~-~~~~l~~~~~~a~~~l~~~~~~~g~~~e 81 (446)
++.+.+.|-|++-+|.|+||...-.++-+ ..-. ...-|+...+. -+..++.++++-+-+. .+....-.+.+
T Consensus 91 ~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLA-svhYmR~HYQe 169 (557)
T KOG3785|consen 91 AELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLA-SVHYMRMHYQE 169 (557)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHH-HHHHHHHHHHH
Confidence 45678899999999999999987666411 0000 00000000000 0113344444444443 44555678999
Q ss_pred HHHHHHHHhCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHhhcCCCCH
Q 013299 82 TIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDP 161 (446)
Q Consensus 82 A~~~y~~al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~ 161 (446)
||..|+++|.. .|+.. .+.-.+|.. |...+-++-+..++ +..++..|+++
T Consensus 170 AIdvYkrvL~d----n~ey~-alNVy~ALC--------------------yyKlDYydvsqevl-----~vYL~q~pdSt 219 (557)
T KOG3785|consen 170 AIDVYKRVLQD----NPEYI-ALNVYMALC--------------------YYKLDYYDVSQEVL-----KVYLRQFPDST 219 (557)
T ss_pred HHHHHHHHHhc----Chhhh-hhHHHHHHH--------------------HHhcchhhhHHHHH-----HHHHHhCCCcH
Confidence 99999999997 55432 233333332 22333344444443 44577889999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhCCC-CCCc-------------------------------HHHHHHHHHHHHHCC
Q 013299 162 SILDHLSFAFSIAGDLSSLATQIEELLPG-IINR-------------------------------KERYHILALCYYGAG 209 (446)
Q Consensus 162 ~~~~~lg~~l~~~~~~~~A~~~~~~al~~-~p~~-------------------------------~~~~~~lg~~~~~~g 209 (446)
-+.+.++-.+.+.=+-..|.+......+- +... |++..+|..-|.++|
T Consensus 220 iA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~ 299 (557)
T KOG3785|consen 220 IAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQN 299 (557)
T ss_pred HHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccc
Confidence 99998888887764444444444433322 2111 234445555555555
Q ss_pred ChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHH---HHHHHcCCCcc-hhhhHHHHHhhchhHhhh
Q 013299 210 EDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFAS---RALECLGDGCD-QMESTANCLLGISLSAQS 285 (446)
Q Consensus 210 ~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~---~al~~~~~~~~-~~~~~a~~~lg~~~~~~~ 285 (446)
+..+|+...+ .++|..|.-++..|-+ ....|+--...++.+ +-++....+.. ....-+.-..+.+
T Consensus 300 dVqeA~~L~K-----dl~PttP~EyilKgvv-~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~----- 368 (557)
T KOG3785|consen 300 DVQEAISLCK-----DLDPTTPYEYILKGVV-FAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASY----- 368 (557)
T ss_pred cHHHHHHHHh-----hcCCCChHHHHHHHHH-HHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHH-----
Confidence 5555555433 3556555554443322 212222222222222 11111111000 0000000000001
Q ss_pred hhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHc
Q 013299 286 KVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQ 365 (446)
Q Consensus 286 ~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~ 365 (446)
+.-..++++.+.++...- ..--+|-...++++.++...|.+.+|++.|-+.-.-+-.+.......||.++...
T Consensus 369 ------fFL~~qFddVl~YlnSi~-sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~n 441 (557)
T KOG3785|consen 369 ------FFLSFQFDDVLTYLNSIE-SYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRN 441 (557)
T ss_pred ------HHHHHHHHHHHHHHHHHH-HHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhc
Confidence 112357889998888877 8888888889999999999999999999998775544333235666789999999
Q ss_pred cCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhcc
Q 013299 366 KRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFS 426 (446)
Q Consensus 366 g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~~~ 426 (446)
|+.+-|+..+-+- ..|. +....+...|......++|==|-+.|..+=.++| .++.|.
T Consensus 442 kkP~lAW~~~lk~--~t~~-e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP-~pEnWe 498 (557)
T KOG3785|consen 442 KKPQLAWDMMLKT--NTPS-ERFSLLQLIANDCYKANEFYYAAKAFDELEILDP-TPENWE 498 (557)
T ss_pred CCchHHHHHHHhc--CCch-hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC-CccccC
Confidence 9999998887432 2342 4556667778888889999888888886655555 344443
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.9e-08 Score=95.43 Aligned_cols=148 Identities=13% Similarity=0.009 Sum_probs=109.2
Q ss_pred HHHHhHHHHHHhCChHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHH
Q 013299 65 AVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILL 144 (446)
Q Consensus 65 a~~~l~~~~~~~g~~~eA~~~y~~al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~ 144 (446)
-...-|+.|++.|+|..|...|++|+.. ++-.. .-..++.-..
T Consensus 210 ~~ke~Gn~~fK~gk~~~A~~~Yerav~~---l~~~~----------------------------------~~~~ee~~~~ 252 (397)
T KOG0543|consen 210 RKKERGNVLFKEGKFKLAKKRYERAVSF---LEYRR----------------------------------SFDEEEQKKA 252 (397)
T ss_pred HHHHhhhHHHhhchHHHHHHHHHHHHHH---hhccc----------------------------------cCCHHHHHHH
Confidence 3445678999999999999999999886 11000 0001111111
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcC
Q 013299 145 LMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSG 224 (446)
Q Consensus 145 l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~ 224 (446)
. . + -..++.+++.++.++++|.+|+..+.++|..+|+|+.+.|..|.++..+|+|+.|+..|++++
T Consensus 253 ~------~-~-----k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~-- 318 (397)
T KOG0543|consen 253 E------A-L-----KLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKAL-- 318 (397)
T ss_pred H------H-H-----HHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHH--
Confidence 0 0 0 123678999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC
Q 013299 225 SEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLG 263 (446)
Q Consensus 225 ~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~ 263 (446)
+++|+|-.+...+..+........+...+.|.+.+...+
T Consensus 319 k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 319 KLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 999999877765544432222233344666777776543
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.9e-08 Score=92.34 Aligned_cols=91 Identities=15% Similarity=0.139 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC--HHHHHHHHHHHHHccCHHH
Q 013299 296 TRQAKALQALVSAARSTNMRD---LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN--LKGWLLMARILSAQKRYED 370 (446)
Q Consensus 296 ~~~~eAl~~~~~al~~~~P~~---~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~--~~~~~~la~~~~~~g~~~e 370 (446)
+++++|+..|++.+ +..|++ +.++|.+|.+|...|++++|+..|++++...|+++ ..+++.+|.++..+|++++
T Consensus 157 ~~y~~Ai~af~~fl-~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~ 235 (263)
T PRK10803 157 SRQDDAIVAFQNFV-KKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAK 235 (263)
T ss_pred CCHHHHHHHHHHHH-HHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHH
Confidence 56899999999999 999999 58999999999999999999999999999988852 3789999999999999999
Q ss_pred HHHHHHHHHhhcCCCCcHH
Q 013299 371 AETILNAALDQTGKWEQGE 389 (446)
Q Consensus 371 A~~~~~~al~~~p~~~~~~ 389 (446)
|..+|+++++.+| +...
T Consensus 236 A~~~~~~vi~~yP--~s~~ 252 (263)
T PRK10803 236 AKAVYQQVIKKYP--GTDG 252 (263)
T ss_pred HHHHHHHHHHHCc--CCHH
Confidence 9999999999999 5543
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.4e-08 Score=99.59 Aligned_cols=72 Identities=14% Similarity=0.102 Sum_probs=68.0
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHH---HHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013299 311 STNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKG---WLLMARILSAQKRYEDAETILNAALDQTG 383 (446)
Q Consensus 311 ~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~---~~~la~~~~~~g~~~eA~~~~~~al~~~p 383 (446)
+.+|+++.+|+++|.+|..+|++++|+..|++|++++|++ .++ |+++|.+|..+|++++|+.++++|+++.+
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~-aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn 143 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNP-DEAQAAYYNKACCHAYREEGKKAADCLRTALRDYN 143 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 6799999999999999999999999999999999999998 465 99999999999999999999999999843
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.1e-07 Score=83.71 Aligned_cols=172 Identities=15% Similarity=0.056 Sum_probs=122.0
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCC
Q 013299 151 KVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKC 230 (446)
Q Consensus 151 ~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~ 230 (446)
...+...|+-|++++.+|.-+...|+++.|.+.|...+++||.+.-++.|.|..++--|||+-|..-+.+-- .-||++
T Consensus 89 tQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fY--Q~D~~D 166 (297)
T COG4785 89 SQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFY--QDDPND 166 (297)
T ss_pred hhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHH--hcCCCC
Confidence 345678899999999999999999999999999999999999999999999999999999999999999999 889999
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHH-HHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHH
Q 013299 231 LPALLIASKICGEYPDLAEEGATFAS-RALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAA 309 (446)
Q Consensus 231 ~~a~~~~~~~~~~~~~~~~eA~~~~~-~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al 309 (446)
|-=-+++- ..+..-+..+|...+. |+-. .+.. --+|+..+..+.+.. + ...++++.
T Consensus 167 PfR~LWLY--l~E~k~dP~~A~tnL~qR~~~-~d~e-----~WG~~iV~~yLgkiS-------------~--e~l~~~~~ 223 (297)
T COG4785 167 PFRSLWLY--LNEQKLDPKQAKTNLKQRAEK-SDKE-----QWGWNIVEFYLGKIS-------------E--ETLMERLK 223 (297)
T ss_pred hHHHHHHH--HHHhhCCHHHHHHHHHHHHHh-ccHh-----hhhHHHHHHHHhhcc-------------H--HHHHHHHH
Confidence 85322221 1233345666665544 3433 2211 223443333322211 0 11222222
Q ss_pred HhhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC
Q 013299 310 RSTNMRD-------LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEG 348 (446)
Q Consensus 310 ~~~~P~~-------~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P 348 (446)
+-..++ .+++++||..+...|+.++|...|+-|++-+-
T Consensus 224 -a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 224 -ADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred -hhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 222222 36789999999999999999999999887543
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.3e-08 Score=74.92 Aligned_cols=64 Identities=23% Similarity=0.267 Sum_probs=35.7
Q ss_pred HcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHH
Q 013299 329 EQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKA 395 (446)
Q Consensus 329 ~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a 395 (446)
..|++++|+..|++++..+|++ ..++..+|.++..+|++++|...+++++..+| +++.++..++
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~--~~~~~~~l~a 66 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDN-PEARLLLAQCYLKQGQYDEAEELLERLLKQDP--DNPEYQQLLA 66 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTS-HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT--THHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc--CHHHHHHHHh
Confidence 4555555555555555555555 35555555555555555555555555555555 4455444444
|
... |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.83 E-value=5.8e-08 Score=79.68 Aligned_cols=97 Identities=16% Similarity=0.079 Sum_probs=84.3
Q ss_pred HHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC
Q 013299 272 TANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRD---LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEG 348 (446)
Q Consensus 272 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~---~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P 348 (446)
.+++.++.++... |+.++|+..|++++ +..++. ..++..+|.++...|++++|+..+++++...|
T Consensus 2 ~~~~~~A~a~d~~-----------G~~~~Ai~~Y~~Al-~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p 69 (120)
T PF12688_consen 2 RALYELAWAHDSL-----------GREEEAIPLYRRAL-AAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFP 69 (120)
T ss_pred chHHHHHHHHHhc-----------CCHHHHHHHHHHHH-HcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 3667777777654 56899999999999 876655 56889999999999999999999999999989
Q ss_pred C---CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 013299 349 G---SNLKGWLLMARILSAQKRYEDAETILNAALDQ 381 (446)
Q Consensus 349 ~---~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 381 (446)
+ +. .....++.++...|++++|+.++-.++..
T Consensus 70 ~~~~~~-~l~~f~Al~L~~~gr~~eAl~~~l~~la~ 104 (120)
T PF12688_consen 70 DDELNA-ALRVFLALALYNLGRPKEALEWLLEALAE 104 (120)
T ss_pred CccccH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 8 63 78888999999999999999999888753
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.2e-08 Score=74.89 Aligned_cols=71 Identities=27% Similarity=0.291 Sum_probs=60.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHH
Q 013299 323 LSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAK 396 (446)
Q Consensus 323 lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~ 396 (446)
|..+|...+++++|+..+++++.++|+++ ..|..+|.++..+|++++|+..++++++..| ++..+...++.
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~-~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p--~~~~~~~~~a~ 71 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPDDP-ELWLQRARCLFQLGRYEEALEDLERALELSP--DDPDARALRAM 71 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCcccc-hhhHHHHHHHHHhccHHHHHHHHHHHHHHCC--CcHHHHHHHHh
Confidence 35678888999999999999999999984 8999999999999999999999999999999 77777665544
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.83 E-value=7.4e-08 Score=82.57 Aligned_cols=119 Identities=18% Similarity=0.061 Sum_probs=86.4
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCC---HHHHH
Q 013299 245 PDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRD---LSILY 321 (446)
Q Consensus 245 ~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~---~~a~~ 321 (446)
.++...+...+++.+...|.. .+...+.+.++.++... |++++|+..|+.++ ...|++ +.+.+
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s--~ya~~A~l~lA~~~~~~-----------g~~~~A~~~l~~~~-~~~~d~~l~~~a~l 89 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSS--PYAALAALQLAKAAYEQ-----------GDYDEAKAALEKAL-ANAPDPELKPLARL 89 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCC--hHHHHHHHHHHHHHHHC-----------CCHHHHHHHHHHHH-hhCCCHHHHHHHHH
Confidence 345555555566666643332 13355666677666543 56888999999888 776665 45788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 013299 322 RLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAAL 379 (446)
Q Consensus 322 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al 379 (446)
.||.++..+|++++|+..++.. .-.+-. ..++..+|.|+..+|++++|+..|++||
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~-~~~~~~-~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQI-PDEAFK-ALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhc-cCcchH-HHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 8999999999999999999763 333344 3788899999999999999999999875
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.6e-05 Score=78.88 Aligned_cols=248 Identities=10% Similarity=0.031 Sum_probs=177.2
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCC-CCCCcH-----HHHHHHHHHHHHCCChHHHHHHHHHHhc
Q 013299 150 RKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLP-GIINRK-----ERYHILALCYYGAGEDLVALNLLRTLLS 223 (446)
Q Consensus 150 ~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~-~~p~~~-----~~~~~lg~~~~~~g~~~eA~~~~~~al~ 223 (446)
...++.++|++.+-|...-.+ ..|+..+-+..|..|++ .+|..+ ..|..+|..|...|+.+.|...|++++
T Consensus 338 NsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~- 414 (835)
T KOG2047|consen 338 NSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKAT- 414 (835)
T ss_pred HHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhh-
Confidence 456788999999988765444 46788888999988764 455443 578999999999999999999999999
Q ss_pred CCCC-CCC---hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcc--------hh------hhHHHHHhhchhHhhh
Q 013299 224 GSED-PKC---LPALLIASKICGEYPDLAEEGATFASRALECLGDGCD--------QM------ESTANCLLGISLSAQS 285 (446)
Q Consensus 224 ~~~~-P~~---~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~--------~~------~~~a~~~lg~~~~~~~ 285 (446)
..+ |.- ..+|..-|..-+. ..+++.|....++|.. .|..+. +. ....|..+....
T Consensus 415 -~V~y~~v~dLa~vw~~waemElr-h~~~~~Al~lm~~A~~-vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~Dle---- 487 (835)
T KOG2047|consen 415 -KVPYKTVEDLAEVWCAWAEMELR-HENFEAALKLMRRATH-VPTNPELEYYDNSEPVQARLHRSLKIWSMYADLE---- 487 (835)
T ss_pred -cCCccchHHHHHHHHHHHHHHHh-hhhHHHHHHHHHhhhc-CCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHH----
Confidence 443 322 2344444444333 4678999999999987 454321 00 111122221111
Q ss_pred hhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHH
Q 013299 286 KVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS-NLKGWLLMARILSA 364 (446)
Q Consensus 286 ~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~-~~~~~~~la~~~~~ 364 (446)
+..|-++.....|++++ .+.=-.|++..|.|..+....-+++|.+.|++.+.+.|-- ..+.|...-....+
T Consensus 488 -------Es~gtfestk~vYdrii-dLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ 559 (835)
T KOG2047|consen 488 -------ESLGTFESTKAVYDRII-DLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIK 559 (835)
T ss_pred -------HHhccHHHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHH
Confidence 23456777888999999 8999999999999999999999999999999999997531 13566654333322
Q ss_pred ---ccCHHHHHHHHHHHHhhcCCCCc-HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 013299 365 ---QKRYEDAETILNAALDQTGKWEQ-GELLRTKAKVQLVQGQLKGAVETYTHLLA 416 (446)
Q Consensus 365 ---~g~~~eA~~~~~~al~~~p~~~~-~~~~~~~a~~~~~~g~~~eA~~~~~~~l~ 416 (446)
.-..+.|...|++||+.-|. .+ -.++...+.+..+-|-...|++.|+++-.
T Consensus 560 rygg~klEraRdLFEqaL~~Cpp-~~aKtiyLlYA~lEEe~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 560 RYGGTKLERARDLFEQALDGCPP-EHAKTIYLLYAKLEEEHGLARHAMSIYERATS 614 (835)
T ss_pred HhcCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 23578999999999987662 33 44566778899999999999999988743
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.81 E-value=5.4e-09 Score=77.02 Aligned_cols=67 Identities=25% Similarity=0.308 Sum_probs=58.1
Q ss_pred HHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHH
Q 013299 171 FSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASK 239 (446)
Q Consensus 171 l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~ 239 (446)
+...|++++|++.|++++..+|+++++++.+|.+++..|++++|...+++++ ..+|+++..+..++.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~--~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLL--KQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH--GGGTTHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHCcCHHHHHHHHhc
Confidence 3567899999999999999999999999999999999999999999999999 889998776665543
|
... |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.80 E-value=7.3e-07 Score=96.42 Aligned_cols=219 Identities=12% Similarity=0.003 Sum_probs=180.5
Q ss_pred HHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChH----HHHHHHHHHhcCCCCHHHHH
Q 013299 177 LSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLP----ALLIASKICGEYPDLAEEGA 252 (446)
Q Consensus 177 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~----a~~~~~~~~~~~~~~~~eA~ 252 (446)
-.+..+.|++.+.-+|+++-.|.++-.-..+.++.+.|....++||+ .+||..-+ .|..+..+ ....|.-+.-.
T Consensus 1440 ~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~-tIN~REeeEKLNiWiA~lNl-En~yG~eesl~ 1517 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALK-TINFREEEEKLNIWIAYLNL-ENAYGTEESLK 1517 (1710)
T ss_pred CCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhh-hCCcchhHHHHHHHHHHHhH-HHhhCcHHHHH
Confidence 34456789999999999999999999999999999999999999997 78887543 22221111 11234445666
Q ss_pred HHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 013299 253 TFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRK 332 (446)
Q Consensus 253 ~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~ 332 (446)
+.|+||-+..++ ..+|..|.-+|.. .+.+++|.+.|+..+ +.--+...+|...|..+..+++
T Consensus 1518 kVFeRAcqycd~------~~V~~~L~~iy~k-----------~ek~~~A~ell~~m~-KKF~q~~~vW~~y~~fLl~~ne 1579 (1710)
T KOG1070|consen 1518 KVFERACQYCDA------YTVHLKLLGIYEK-----------SEKNDEADELLRLML-KKFGQTRKVWIMYADFLLRQNE 1579 (1710)
T ss_pred HHHHHHHHhcch------HHHHHHHHHHHHH-----------hhcchhHHHHHHHHH-HHhcchhhHHHHHHHHHhcccH
Confidence 777888775443 3567777767743 467899999999999 7767889999999999999999
Q ss_pred HHHHHHHHHHHHhhcCC--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHH
Q 013299 333 LNAAHYYAKMLLKLEGG--SNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVET 410 (446)
Q Consensus 333 ~~~A~~~~~~al~l~P~--~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~ 410 (446)
-++|...+++|+.--|. | .+.....|.+.++.|+-+.+...|+-.+..+| ...+.|........+.|+.+-....
T Consensus 1580 ~~aa~~lL~rAL~~lPk~eH-v~~IskfAqLEFk~GDaeRGRtlfEgll~ayP--KRtDlW~VYid~eik~~~~~~vR~l 1656 (1710)
T KOG1070|consen 1580 AEAARELLKRALKSLPKQEH-VEFISKFAQLEFKYGDAERGRTLFEGLLSAYP--KRTDLWSVYIDMEIKHGDIKYVRDL 1656 (1710)
T ss_pred HHHHHHHHHHHHhhcchhhh-HHHHHHHHHHHhhcCCchhhHHHHHHHHhhCc--cchhHHHHHHHHHHccCCHHHHHHH
Confidence 99999999999999998 7 57888889999999999999999999999999 7889999999999999999999999
Q ss_pred HHHHHHHH
Q 013299 411 YTHLLAAL 418 (446)
Q Consensus 411 ~~~~l~l~ 418 (446)
|++++.+.
T Consensus 1657 feRvi~l~ 1664 (1710)
T KOG1070|consen 1657 FERVIELK 1664 (1710)
T ss_pred HHHHHhcC
Confidence 99998763
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.1e-07 Score=93.99 Aligned_cols=112 Identities=19% Similarity=0.117 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHH
Q 013299 296 TRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETIL 375 (446)
Q Consensus 296 ~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~ 375 (446)
+++++|+..|++.. +.+|+ +...++.++...++-.+|++.+++++..+|.+ ...+...+..+...++++.|+...
T Consensus 183 ~~~~~ai~lle~L~-~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d-~~LL~~Qa~fLl~k~~~~lAL~iA 257 (395)
T PF09295_consen 183 QRYDEAIELLEKLR-ERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQD-SELLNLQAEFLLSKKKYELALEIA 257 (395)
T ss_pred ccHHHHHHHHHHHH-hcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhcCCHHHHHHHH
Confidence 56899999999999 88765 66778999999999999999999999999998 699999999999999999999999
Q ss_pred HHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 013299 376 NAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHL 414 (446)
Q Consensus 376 ~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~ 414 (446)
++++...| ++...|+.++.+|...|++++|+..++.+
T Consensus 258 k~av~lsP--~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 258 KKAVELSP--SEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHhCc--hhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 99999999 89999999999999999999999887744
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.5e-08 Score=75.76 Aligned_cols=69 Identities=20% Similarity=0.130 Sum_probs=63.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHH
Q 013299 167 LSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIA 237 (446)
Q Consensus 167 lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~ 237 (446)
|..++...+++++|++++++++.++|+++..|+.+|.++..+|++++|+..|++++ +..|+++.+....
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l--~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERAL--ELSPDDPDARALR 69 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHH--HHCCCcHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999 8999998876543
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.5e-08 Score=97.96 Aligned_cols=84 Identities=17% Similarity=0.139 Sum_probs=71.7
Q ss_pred hhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHH---HHHHHHHHHHhCCHHHHHHHHHHHHHHHhhh
Q 013299 345 KLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGEL---LRTKAKVQLVQGQLKGAVETYTHLLAALQVQ 421 (446)
Q Consensus 345 ~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~---~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~ 421 (446)
..+|++ ..+|+++|.+|..+|+|++|+..|++|++++| ++.++ |+++|.++..+|++++|++++++++++.+..
T Consensus 69 ~~dP~~-a~a~~NLG~AL~~lGryeEAIa~f~rALeL~P--d~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~~ 145 (453)
T PLN03098 69 EADVKT-AEDAVNLGLSLFSKGRVKDALAQFETALELNP--NPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNLK 145 (453)
T ss_pred cCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcchh
Confidence 368999 59999999999999999999999999999999 77754 9999999999999999999999999984333
Q ss_pred hhhccCCcch
Q 013299 422 TKTFSSDKRF 431 (446)
Q Consensus 422 ~~~~~~~~~~ 431 (446)
+.....+|.+
T Consensus 146 f~~i~~DpdL 155 (453)
T PLN03098 146 FSTILNDPDL 155 (453)
T ss_pred HHHHHhCcch
Confidence 4333444433
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=2e-07 Score=82.13 Aligned_cols=101 Identities=17% Similarity=0.058 Sum_probs=86.6
Q ss_pred hhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 013299 270 ESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG 349 (446)
Q Consensus 270 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~ 349 (446)
.+..++-.|..|... |...-|.-.|.+++ .+.|+-|++++.||.-+...|+++.|.+.|+..+++||.
T Consensus 64 RA~l~fERGvlYDSl-----------GL~~LAR~DftQaL-ai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~ 131 (297)
T COG4785 64 RAQLLFERGVLYDSL-----------GLRALARNDFSQAL-AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT 131 (297)
T ss_pred HHHHHHHhcchhhhh-----------hHHHHHhhhhhhhh-hcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCc
Confidence 356777888888654 45677888999999 999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013299 350 SNLKGWLLMARILSAQKRYEDAETILNAALDQTG 383 (446)
Q Consensus 350 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 383 (446)
+. -++.+.|..+.--|||.-|..-+.+.-+.+|
T Consensus 132 y~-Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~ 164 (297)
T COG4785 132 YN-YAHLNRGIALYYGGRYKLAQDDLLAFYQDDP 164 (297)
T ss_pred ch-HHHhccceeeeecCchHhhHHHHHHHHhcCC
Confidence 85 8899999998889999988888777766666
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.9e-07 Score=87.22 Aligned_cols=211 Identities=17% Similarity=0.081 Sum_probs=127.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcC
Q 013299 165 DHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEY 244 (446)
Q Consensus 165 ~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~ 244 (446)
...|..+...|++++|.++|.++. .++...|+...|-..|..+. .++.+
T Consensus 39 ~~Aa~~fk~~~~~~~A~~ay~kAa--------------~~~~~~~~~~~Aa~~~~~Aa-----------------~~~k~ 87 (282)
T PF14938_consen 39 EKAANCFKLAKDWEKAAEAYEKAA--------------DCYEKLGDKFEAAKAYEEAA-----------------NCYKK 87 (282)
T ss_dssp HHHHHHHHHTT-CHHHHHHHHHHH--------------HHHHHTT-HHHHHHHHHHHH-----------------HHHHH
T ss_pred HHHHHHHHHHhccchhHHHHHHHH--------------HHHHHcCCHHHHHHHHHHHH-----------------HHHHh
Confidence 445666666777777777666553 23334444444444444433 22332
Q ss_pred CCCHHHHHHHHHHHHHHcCC-CcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCC--CC----H
Q 013299 245 PDLAEEGATFASRALECLGD-GCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNM--RD----L 317 (446)
Q Consensus 245 ~~~~~eA~~~~~~al~~~~~-~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P--~~----~ 317 (446)
. ++++|+.+++++++..-. +.....+.++..+|.+|... .+++++|+++|++|+ ++-. +. .
T Consensus 88 ~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~----------~~d~e~Ai~~Y~~A~-~~y~~e~~~~~a~ 155 (282)
T PF14938_consen 88 G-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQ----------LGDYEKAIEYYQKAA-ELYEQEGSPHSAA 155 (282)
T ss_dssp T-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCT----------T--HHHHHHHHHHHH-HHHHHTT-HHHHH
T ss_pred h-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH----------cCCHHHHHHHHHHHH-HHHHHCCChhhHH
Confidence 2 666777777777765321 11223355666677776543 157899999999999 7632 22 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC-----H-HHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCC-cHHH
Q 013299 318 SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN-----L-KGWLLMARILSAQKRYEDAETILNAALDQTGKWE-QGEL 390 (446)
Q Consensus 318 ~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~-----~-~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~-~~~~ 390 (446)
..+..+|.++.+.|+|++|+..|++.....-+++ + ..+...+.++...|++..|...+++....+|... ..+.
T Consensus 156 ~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~ 235 (282)
T PF14938_consen 156 ECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREY 235 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHH
Confidence 4567899999999999999999999987432211 1 3455678899999999999999999999888332 2333
Q ss_pred HH--HHHHHH--HHhCCHHHHHHHHHHHHHHH
Q 013299 391 LR--TKAKVQ--LVQGQLKGAVETYTHLLAAL 418 (446)
Q Consensus 391 ~~--~~a~~~--~~~g~~~eA~~~~~~~l~l~ 418 (446)
.+ .+-.++ .....+++++..|.+.-.++
T Consensus 236 ~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld 267 (282)
T PF14938_consen 236 KFLEDLLEAYEEGDVEAFTEAVAEYDSISRLD 267 (282)
T ss_dssp HHHHHHHHHHHTT-CCCHHHHCHHHTTSS---
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcccCccH
Confidence 33 222222 24556788888888776665
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=1e-07 Score=82.94 Aligned_cols=104 Identities=13% Similarity=0.078 Sum_probs=74.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhcCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHH
Q 013299 322 RLSLEYAEQRKLNAAHYYAKMLLKLEGGSN----LKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKV 397 (446)
Q Consensus 322 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~----~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~ 397 (446)
.=|.-++..|+|++|..-|..||.+-|..+ ...+.+.|.++++++.++.|+..+.+||+++| .+..++..+|.+
T Consensus 100 ~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~p--ty~kAl~RRAea 177 (271)
T KOG4234|consen 100 KEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNP--TYEKALERRAEA 177 (271)
T ss_pred HHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCc--hhHHHHHHHHHH
Confidence 335566677777777777777777777642 13456677777777777777777777777777 677777777777
Q ss_pred HHHhCCHHHHHHHHHHHHHHHhhhhhhccC
Q 013299 398 QLVQGQLKGAVETYTHLLAALQVQTKTFSS 427 (446)
Q Consensus 398 ~~~~g~~~eA~~~~~~~l~l~~~~~~~~~~ 427 (446)
|.++.++++|++.|++++++.|...+.-..
T Consensus 178 yek~ek~eealeDyKki~E~dPs~~ear~~ 207 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILESDPSRREAREA 207 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHhCcchHHHHHH
Confidence 777777777777777777777776554433
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.70 E-value=6.8e-09 Score=96.94 Aligned_cols=225 Identities=12% Similarity=0.033 Sum_probs=130.4
Q ss_pred CccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHC
Q 013299 129 GSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGA 208 (446)
Q Consensus 129 ~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 208 (446)
|+-|..+|.|+|||.+| ...+...|.++-.+.+.+.+|.+.++|..|...+..|+.++-.+..+|...|.+-..+
T Consensus 104 GN~yFKQgKy~EAIDCY-----s~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCY-----STAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESL 178 (536)
T ss_pred hhhhhhccchhHHHHHh-----hhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 34567777788887775 4445667777777777888888888888888888888888777777888888777778
Q ss_pred CChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHH----HhhchhHhh
Q 013299 209 GEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANC----LLGISLSAQ 284 (446)
Q Consensus 209 g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~----~lg~~~~~~ 284 (446)
|...||..-++.+| ++.|++.+..-..+.+. -..|+ +-++...+...+.....+.. .-|..++.
T Consensus 179 g~~~EAKkD~E~vL--~LEP~~~ELkK~~a~i~-----Sl~E~----~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk- 246 (536)
T KOG4648|consen 179 GNNMEAKKDCETVL--ALEPKNIELKKSLARIN-----SLRER----KIATKSTPGFTPARQGMIQILPIKKPGYKFSK- 246 (536)
T ss_pred hhHHHHHHhHHHHH--hhCcccHHHHHHHHHhc-----chHhh----hHHhhcCCCCCccccchhhhccccCcchhhhh-
Confidence 88888888888888 77887665433222221 11111 00111111100000000100 01222222
Q ss_pred hhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q 013299 285 SKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSA 364 (446)
Q Consensus 285 ~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~ 364 (446)
.+.++-++.+|-+-+ ..+-++.....+ +..+....++++|+..+-+++-++|.. .......+..-.-
T Consensus 247 ----------~~~~~~~i~~~~~~~-A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~-~~~~s~~~~A~T~ 313 (536)
T KOG4648|consen 247 ----------KAMRSVPVVDVVSPR-ATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTP-MPDTSGPPKAETI 313 (536)
T ss_pred ----------hhccccceeEeeccc-cccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCc-CcccCCCchhHHH
Confidence 234555666665555 444444433333 555556666777777777776666664 2444444555555
Q ss_pred ccCHHHHHHHHHHHHhhcC
Q 013299 365 QKRYEDAETILNAALDQTG 383 (446)
Q Consensus 365 ~g~~~eA~~~~~~al~~~p 383 (446)
.|...|+-..++.++.+.|
T Consensus 314 ~~~~~E~K~~~~T~~~~~P 332 (536)
T KOG4648|consen 314 AKTSKEVKPTKQTAVKVAP 332 (536)
T ss_pred HhhhhhcCcchhheeeecc
Confidence 5666666666666666666
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.6e-07 Score=78.90 Aligned_cols=90 Identities=8% Similarity=0.013 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHH
Q 013299 295 ATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETI 374 (446)
Q Consensus 295 ~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~ 374 (446)
.|++++|...|+-.. ..+|.|++.|+.||.++..++++++|+..|..|..+++++| ...+..|.++..+|+.+.|...
T Consensus 50 ~Gk~~eA~~~F~~L~-~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp-~p~f~agqC~l~l~~~~~A~~~ 127 (165)
T PRK15331 50 QGRLDEAETFFRFLC-IYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDY-RPVFFTGQCQLLMRKAAKARQC 127 (165)
T ss_pred CCCHHHHHHHHHHHH-HhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCC-CccchHHHHHHHhCCHHHHHHH
Confidence 468999999999999 99999999999999999999999999999999999999997 8899999999999999999999
Q ss_pred HHHHHhhcCCCCcHH
Q 013299 375 LNAALDQTGKWEQGE 389 (446)
Q Consensus 375 ~~~al~~~p~~~~~~ 389 (446)
|+.++. .| .+..
T Consensus 128 f~~a~~-~~--~~~~ 139 (165)
T PRK15331 128 FELVNE-RT--EDES 139 (165)
T ss_pred HHHHHh-Cc--chHH
Confidence 999998 56 5444
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.9e-05 Score=72.03 Aligned_cols=227 Identities=19% Similarity=0.081 Sum_probs=131.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHH
Q 013299 158 EWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIA 237 (446)
Q Consensus 158 p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~ 237 (446)
+.+++-...+.++|...|++..-+......- .....+...++..+..-++.++-+..+.+.+. ...-+....+..+
T Consensus 38 ~~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a-~~~~~sn~i~~l~ 113 (299)
T KOG3081|consen 38 KTDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESNKKSILASLYELVA-DSTDGSNLIDLLL 113 (299)
T ss_pred cchhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcchhHHHHHHHHHHHH-hhccchhHHHHHH
Confidence 3666666777777777777654443322111 11223344455555555666666655555441 1122222233334
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCH
Q 013299 238 SKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDL 317 (446)
Q Consensus 238 ~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~ 317 (446)
+.+.+.+.+++++|+....+.... ...+ .--.++ .+..+.+-|...+++.. +++.+.
T Consensus 114 aa~i~~~~~~~deAl~~~~~~~~l--------E~~A--l~VqI~-----------lk~~r~d~A~~~lk~mq-~ided~- 170 (299)
T KOG3081|consen 114 AAIIYMHDGDFDEALKALHLGENL--------EAAA--LNVQIL-----------LKMHRFDLAEKELKKMQ-QIDEDA- 170 (299)
T ss_pred hhHHhhcCCChHHHHHHHhccchH--------HHHH--HHHHHH-----------HHHHHHHHHHHHHHHHH-ccchHH-
Confidence 445455567788877776652221 1111 111122 12345667777777777 665543
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHH
Q 013299 318 SILYRLSLEYAE----QRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRT 393 (446)
Q Consensus 318 ~a~~~lg~~~~~----~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~ 393 (446)
.+..||.++.. .+.+.+|.-+|+..-..-|..+ ...+.++.+.+.+|||++|...++.||..+| .+++.+.+
T Consensus 171 -tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~-~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~--~dpetL~N 246 (299)
T KOG3081|consen 171 -TLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTP-LLLNGQAVCHLQLGRYEEAESLLEEALDKDA--KDPETLAN 246 (299)
T ss_pred -HHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCCh-HHHccHHHHHHHhcCHHHHHHHHHHHHhccC--CCHHHHHH
Confidence 34444444432 2367778888877776444443 7777788888888888888888888888777 67788888
Q ss_pred HHHHHHHhCCHHHHHHHHHHHH
Q 013299 394 KAKVQLVQGQLKGAVETYTHLL 415 (446)
Q Consensus 394 ~a~~~~~~g~~~eA~~~~~~~l 415 (446)
+-.+-...|...++.+-+-.-+
T Consensus 247 liv~a~~~Gkd~~~~~r~l~QL 268 (299)
T KOG3081|consen 247 LIVLALHLGKDAEVTERNLSQL 268 (299)
T ss_pred HHHHHHHhCCChHHHHHHHHHH
Confidence 7777777787777766554333
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.1e-06 Score=73.03 Aligned_cols=134 Identities=22% Similarity=0.237 Sum_probs=115.8
Q ss_pred HHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC--
Q 013299 273 ANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS-- 350 (446)
Q Consensus 273 a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~-- 350 (446)
-.+.||..+.. .|++.||...|++++--+--+|+..+..++......++..+|...+++..+-+|..
T Consensus 91 nr~rLa~al~e-----------lGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~ 159 (251)
T COG4700 91 NRYRLANALAE-----------LGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRS 159 (251)
T ss_pred HHHHHHHHHHH-----------hhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCC
Confidence 45667776643 57899999999999934678999999999999999999999999999999999863
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhh
Q 013299 351 NLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQ 421 (446)
Q Consensus 351 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~ 421 (446)
| .....+|.++..+|++.+|...|+.++.-.| .+.+....+..+.++|+.++|-+.|..+.+-....
T Consensus 160 p-d~~Ll~aR~laa~g~~a~Aesafe~a~~~yp---g~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~r~ 226 (251)
T COG4700 160 P-DGHLLFARTLAAQGKYADAESAFEVAISYYP---GPQARIYYAEMLAKQGRLREANAQYVAVVDTAKRS 226 (251)
T ss_pred C-CchHHHHHHHHhcCCchhHHHHHHHHHHhCC---CHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhc
Confidence 4 6788899999999999999999999999999 56777788899999999999999988877765543
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=98.64 E-value=5.6e-07 Score=77.58 Aligned_cols=92 Identities=15% Similarity=0.073 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 013299 294 RATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQ----------RKLNAAHYYAKMLLKLEGGSNLKGWLLMARILS 363 (446)
Q Consensus 294 ~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~----------~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~ 363 (446)
|.--++.|.+.++... ..||.|++++++=|.++.++ ..+++|+.=|++|+.++|+. ..+++.+|.+++
T Consensus 3 rl~~FE~ark~aea~y-~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~-hdAlw~lGnA~t 80 (186)
T PF06552_consen 3 RLLFFEHARKKAEAAY-AKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNK-HDALWCLGNAYT 80 (186)
T ss_dssp HHHHHHHHHHHHHHHH-HH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCch-HHHHHHHHHHHH
Confidence 4445789999999999 99999999999999888765 34677888999999999999 599999999998
Q ss_pred HccC-----------HHHHHHHHHHHHhhcCCCCcHH
Q 013299 364 AQKR-----------YEDAETILNAALDQTGKWEQGE 389 (446)
Q Consensus 364 ~~g~-----------~~eA~~~~~~al~~~p~~~~~~ 389 (446)
.++. |++|..+|++|+..+| +|..
T Consensus 81 s~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P--~ne~ 115 (186)
T PF06552_consen 81 SLAFLTPDTAEAEEYFEKATEYFQKAVDEDP--NNEL 115 (186)
T ss_dssp HHHHH---HHHHHHHHHHHHHHHHHHHHH-T--T-HH
T ss_pred HHHhhcCChHHHHHHHHHHHHHHHHHHhcCC--CcHH
Confidence 8865 7889999999999999 6644
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.62 E-value=6.5e-07 Score=72.63 Aligned_cols=93 Identities=19% Similarity=0.132 Sum_probs=54.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCC--cHHHHHHHHHHHHHh
Q 013299 324 SLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWE--QGELLRTKAKVQLVQ 401 (446)
Q Consensus 324 g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~--~~~~~~~~a~~~~~~ 401 (446)
|.++.+.|++++|++.|.+++.+-|..+ .+|++.+..+..+|+.++|++-+++|+++..... .-.++..+|.++..+
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~ra-SayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPERA-SAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccch-HhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 4455556666666666666666666663 6666666666666666666666666666543100 123445566666666
Q ss_pred CCHHHHHHHHHHHHHH
Q 013299 402 GQLKGAVETYTHLLAA 417 (446)
Q Consensus 402 g~~~eA~~~~~~~l~l 417 (446)
|+.+.|...|+.+-++
T Consensus 129 g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQL 144 (175)
T ss_pred CchHHHHHhHHHHHHh
Confidence 6666666666655554
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.59 E-value=8.2e-07 Score=87.76 Aligned_cols=117 Identities=18% Similarity=0.151 Sum_probs=96.1
Q ss_pred hcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHH
Q 013299 242 GEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILY 321 (446)
Q Consensus 242 ~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~ 321 (446)
+...+++++|+..+++..+.. | .+...++.++... ++-.+|+..+.+++ ..+|++...+.
T Consensus 179 l~~t~~~~~ai~lle~L~~~~-p-------ev~~~LA~v~l~~-----------~~E~~AI~ll~~aL-~~~p~d~~LL~ 238 (395)
T PF09295_consen 179 LSLTQRYDEAIELLEKLRERD-P-------EVAVLLARVYLLM-----------NEEVEAIRLLNEAL-KENPQDSELLN 238 (395)
T ss_pred HhhcccHHHHHHHHHHHHhcC-C-------cHHHHHHHHHHhc-----------CcHHHHHHHHHHHH-HhCCCCHHHHH
Confidence 344577888888888887743 2 2344455555432 34579999999999 99999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 013299 322 RLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAAL 379 (446)
Q Consensus 322 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al 379 (446)
..+..+...++++.|+...++|+.+.|++ ..+|..|+.+|..+|+|++|+..++.+-
T Consensus 239 ~Qa~fLl~k~~~~lAL~iAk~av~lsP~~-f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 239 LQAEFLLSKKKYELALEIAKKAVELSPSE-FETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCchh-HHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999999999999999998 6999999999999999999998887443
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.3e-07 Score=88.47 Aligned_cols=95 Identities=13% Similarity=0.101 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHH
Q 013299 292 FDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDA 371 (446)
Q Consensus 292 ~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA 371 (446)
+.++|.|+||+.||.+++ ..+|.|+-.+-|.+.+|.++.++..|+..|..|+.++-.. ..+|...|..-..+|...||
T Consensus 107 yFKQgKy~EAIDCYs~~i-a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y-~KAYSRR~~AR~~Lg~~~EA 184 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAI-AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLY-VKAYSRRMQARESLGNNMEA 184 (536)
T ss_pred hhhccchhHHHHHhhhhh-ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHH-HHHHHHHHHHHHHHhhHHHH
Confidence 345666777777777777 7777777777777777777777777777777777777666 46677777777777777777
Q ss_pred HHHHHHHHhhcCCCCcHHH
Q 013299 372 ETILNAALDQTGKWEQGEL 390 (446)
Q Consensus 372 ~~~~~~al~~~p~~~~~~~ 390 (446)
-.-++.+|++.| ++.++
T Consensus 185 KkD~E~vL~LEP--~~~EL 201 (536)
T KOG4648|consen 185 KKDCETVLALEP--KNIEL 201 (536)
T ss_pred HHhHHHHHhhCc--ccHHH
Confidence 777777777777 44443
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.4e-06 Score=80.26 Aligned_cols=104 Identities=18% Similarity=0.166 Sum_probs=92.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCC-CcHHHHHHHHH
Q 013299 320 LYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN--LKGWLLMARILSAQKRYEDAETILNAALDQTGKW-EQGELLRTKAK 396 (446)
Q Consensus 320 ~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~--~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~~~~~a~ 396 (446)
.|+.|.-++..|+|.+|+..|+.-+..-|++. ..+++-||.+++.+|+|++|...|..+++..|+. .-+++++-+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 78888899999999999999999999999862 2688889999999999999999999999998842 24799999999
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHhhhhh
Q 013299 397 VQLVQGQLKGAVETYTHLLAALQVQTK 423 (446)
Q Consensus 397 ~~~~~g~~~eA~~~~~~~l~l~~~~~~ 423 (446)
++.++|+.++|...|+++++-+|+...
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence 999999999999999999998865443
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.56 E-value=7e-06 Score=70.89 Aligned_cols=157 Identities=18% Similarity=0.030 Sum_probs=114.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCC
Q 013299 166 HLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYP 245 (446)
Q Consensus 166 ~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~ 245 (446)
.++.+..++=+++.......+.+++.|+... .+.||..+.+.|++.||...|++++. .+.-+++..++.++...+. .
T Consensus 61 ~~~~a~~q~ldP~R~~Rea~~~~~~ApTvqn-r~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa-~ 137 (251)
T COG4700 61 TLLMALQQKLDPERHLREATEELAIAPTVQN-RYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFA-I 137 (251)
T ss_pred HHHHHHHHhcChhHHHHHHHHHHhhchhHHH-HHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHh-h
Confidence 4556666666778887777888888887654 67899999999999999999999995 4555665544433322111 1
Q ss_pred CCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCC--CHHHHHHH
Q 013299 246 DLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMR--DLSILYRL 323 (446)
Q Consensus 246 ~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~--~~~a~~~l 323 (446)
+ ++.+|...+++.. +.+|. .|+.+..+
T Consensus 138 ~--------------------------------------------------~~A~a~~tLe~l~-e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 138 Q--------------------------------------------------EFAAAQQTLEDLM-EYNPAFRSPDGHLLF 166 (251)
T ss_pred c--------------------------------------------------cHHHHHHHHHHHh-hcCCccCCCCchHHH
Confidence 2 3456666666666 66664 46667777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 013299 324 SLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAA 378 (446)
Q Consensus 324 g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~a 378 (446)
|.++..+|++++|+..|+.++.--|+ + .+....+..+.++|+.++|-.-+...
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~ypg-~-~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISYYPG-P-QARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHhCCC-H-HHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 88888889999899999999888888 3 78888888888888888776554433
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.4e-05 Score=71.43 Aligned_cols=193 Identities=10% Similarity=0.007 Sum_probs=133.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhCCCCCCcH--HHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhc
Q 013299 166 HLSFAFSIAGDLSSLATQIEELLPGIINRK--ERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGE 243 (446)
Q Consensus 166 ~lg~~l~~~~~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~ 243 (446)
.++..+..-++.++-+....+-+...-+.. -....=|.++...|++++|+....... +.++....-.+ +.
T Consensus 77 ~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~-------~lE~~Al~VqI-~l 148 (299)
T KOG3081|consen 77 LLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE-------NLEAAALNVQI-LL 148 (299)
T ss_pred HHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc-------hHHHHHHHHHH-HH
Confidence 334444444444444444433333322222 334444778889999999999888733 34444333333 33
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcc-hhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHH
Q 013299 244 YPDLAEEGATFASRALECLGDGCD-QMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYR 322 (446)
Q Consensus 244 ~~~~~~eA~~~~~~al~~~~~~~~-~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~ 322 (446)
++.+++-|....++..+. +.+.. .-.+.+|..++.. .+...+|.-.|++.- +.-|..+..++.
T Consensus 149 k~~r~d~A~~~lk~mq~i-ded~tLtQLA~awv~la~g--------------gek~qdAfyifeE~s-~k~~~T~~llnG 212 (299)
T KOG3081|consen 149 KMHRFDLAEKELKKMQQI-DEDATLTQLAQAWVKLATG--------------GEKIQDAFYIFEELS-EKTPPTPLLLNG 212 (299)
T ss_pred HHHHHHHHHHHHHHHHcc-chHHHHHHHHHHHHHHhcc--------------chhhhhHHHHHHHHh-cccCCChHHHcc
Confidence 467888888888888874 22211 1123444444332 345789999999999 888999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHH-HHHHHhhcC
Q 013299 323 LSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETI-LNAALDQTG 383 (446)
Q Consensus 323 lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~-~~~al~~~p 383 (446)
.+.++..+|++++|...++.|+.-+|++| +.+.++-.+-..+|.-.++..- +.+.....|
T Consensus 213 ~Av~~l~~~~~eeAe~lL~eaL~kd~~dp-etL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p 273 (299)
T KOG3081|consen 213 QAVCHLQLGRYEEAESLLEEALDKDAKDP-ETLANLIVLALHLGKDAEVTERNLSQLKLSHP 273 (299)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhccCCCH-HHHHHHHHHHHHhCCChHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999996 9999999888889998887754 455555667
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.4e-07 Score=71.55 Aligned_cols=67 Identities=22% Similarity=0.330 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhh---cCCC--CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Q 013299 353 KGWLLMARILSAQKRYEDAETILNAALDQ---TGKW--EQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQ 419 (446)
Q Consensus 353 ~~~~~la~~~~~~g~~~eA~~~~~~al~~---~p~~--~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~ 419 (446)
.++.++|.++..+|+|++|+.+|++++++ .++. +-..++.++|.++..+|++++|++.+++++++.+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE 77 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 44555555555555555555555555533 1100 1244555666666666666666666666666553
|
... |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.49 E-value=5.1e-07 Score=68.36 Aligned_cols=69 Identities=20% Similarity=0.179 Sum_probs=58.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc---C-CCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHhhc
Q 013299 314 MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLE---G-GSN--LKGWLLMARILSAQKRYEDAETILNAALDQT 382 (446)
Q Consensus 314 P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~---P-~~~--~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 382 (446)
|+-+.+++++|.+|..+|++++|+.+|++++.+. + +++ +.++.++|.++..+|++++|+.++++++++.
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 5557889999999999999999999999999762 1 221 3678899999999999999999999999764
|
... |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.49 E-value=5.3e-06 Score=78.47 Aligned_cols=237 Identities=15% Similarity=0.099 Sum_probs=137.7
Q ss_pred HHHHHHhcCCHHHHHHHHHhhCCCCCCcHH---HHHHHHHHHHHCCChHHHHHH----HHHHhcCCCCCCC--hHHHHHH
Q 013299 167 LSFAFSIAGDLSSLATQIEELLPGIINRKE---RYHILALCYYGAGEDLVALNL----LRTLLSGSEDPKC--LPALLIA 237 (446)
Q Consensus 167 lg~~l~~~~~~~~A~~~~~~al~~~p~~~~---~~~~lg~~~~~~g~~~eA~~~----~~~al~~~~~P~~--~~a~~~~ 237 (446)
-|.-+....++++|+....+.+..-.+... .+--+..++.++|+|++++.. ..-+. ..+... .++++.+
T Consensus 12 ~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~--~~~ds~~~~ea~lnl 89 (518)
T KOG1941|consen 12 KGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTAR--ELEDSDFLLEAYLNL 89 (518)
T ss_pred HHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 344444455555555555555443222211 122244556667777766543 23333 222111 1233333
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHcCCCcc-hhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCC
Q 013299 238 SKICGEYPDLAEEGATFASRALECLGDGCD-QMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRD 316 (446)
Q Consensus 238 ~~~~~~~~~~~~eA~~~~~~al~~~~~~~~-~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~ 316 (446)
+.. ++..-++.+++.+-+--+. .|.-.. .....++..+|.++.- ++.++++++.|++|+ .+..++
T Consensus 90 ar~-~e~l~~f~kt~~y~k~~l~-lpgt~~~~~~gq~~l~~~~Ahlg-----------ls~fq~~Lesfe~A~-~~A~~~ 155 (518)
T KOG1941|consen 90 ARS-NEKLCEFHKTISYCKTCLG-LPGTRAGQLGGQVSLSMGNAHLG-----------LSVFQKALESFEKAL-RYAHNN 155 (518)
T ss_pred HHH-HHHHHHhhhHHHHHHHHhc-CCCCCcccccchhhhhHHHHhhh-----------HHHHHHHHHHHHHHH-HHhhcc
Confidence 332 2223345566666655555 333221 2223344445554432 346788888888888 765443
Q ss_pred H------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC---------HHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 013299 317 L------SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN---------LKGWLLMARILSAQKRYEDAETILNAALDQ 381 (446)
Q Consensus 317 ~------~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~---------~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 381 (446)
. .+...||.++.+..|+++|+-+..+|.++--... ..+.+.++..+..+|+..+|.++++.|.++
T Consensus 156 ~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kl 235 (518)
T KOG1941|consen 156 DDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKL 235 (518)
T ss_pred CCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 3 3567888888888888888888888877654310 135667788888888888888888888765
Q ss_pred cCCC----CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Q 013299 382 TGKW----EQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQ 419 (446)
Q Consensus 382 ~p~~----~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~ 419 (446)
.-.- -......-+|.|+...|+.+.|+.-|+++....-
T Consensus 236 al~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~ 277 (518)
T KOG1941|consen 236 ALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMA 277 (518)
T ss_pred HHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHh
Confidence 3100 2344455678888888888888888888877653
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.1e-06 Score=70.79 Aligned_cols=108 Identities=13% Similarity=0.029 Sum_probs=81.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCC-CcHHHHH
Q 013299 316 DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN--LKGWLLMARILSAQKRYEDAETILNAALDQTGKW-EQGELLR 392 (446)
Q Consensus 316 ~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~--~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~~~ 392 (446)
.+..+|.-|....+.|+|++|++.++....--|..+ ..+...++.++++.|+|++|+..+++.++++|.. +-.-+++
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 356777888888888888888888888877777542 2577778888888888888888888888888821 1144577
Q ss_pred HHHHHHHHhCC---------------HHHHHHHHHHHHHHHhhhhh
Q 013299 393 TKAKVQLVQGQ---------------LKGAVETYTHLLAALQVQTK 423 (446)
Q Consensus 393 ~~a~~~~~~g~---------------~~eA~~~~~~~l~l~~~~~~ 423 (446)
.+|.+...+.. ..+|...|++++...|+..-
T Consensus 89 ~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 89 MRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred HHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChh
Confidence 78888887776 78888999999888876443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.00013 Score=66.81 Aligned_cols=73 Identities=21% Similarity=0.124 Sum_probs=63.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcH---HHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHH
Q 013299 159 WDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRK---ERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPA 233 (446)
Q Consensus 159 ~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a 233 (446)
..++.++.-|....+.|++++|+..|+++....|.++ .+...++-+++..+++++|+..+++=+ .+.|+++.+
T Consensus 32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi--~lyP~~~n~ 107 (254)
T COG4105 32 LPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFI--RLYPTHPNA 107 (254)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHH--HhCCCCCCh
Confidence 3567888899999999999999999999988877765 577888999999999999999999999 899988764
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.41 E-value=6.8e-07 Score=79.94 Aligned_cols=85 Identities=18% Similarity=0.184 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHH
Q 013299 295 ATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETI 374 (446)
Q Consensus 295 ~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~ 374 (446)
..++..|+.+|.+++ .++|..+..+-+.+.++.+.++++.....+++|+.++|+. +.+++.+|..++....|++|+..
T Consensus 23 ~k~y~~ai~~y~raI-~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~-vk~h~flg~~~l~s~~~~eaI~~ 100 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAI-CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNL-VKAHYFLGQWLLQSKGYDEAIKV 100 (284)
T ss_pred hhhhchHHHHHHHHH-hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHH-HHHHHHHHHHHHhhccccHHHHH
Confidence 456778888888888 8888888888888888888888888888888888888887 57888888888888888888888
Q ss_pred HHHHHhh
Q 013299 375 LNAALDQ 381 (446)
Q Consensus 375 ~~~al~~ 381 (446)
+.+|..+
T Consensus 101 Lqra~sl 107 (284)
T KOG4642|consen 101 LQRAYSL 107 (284)
T ss_pred HHHHHHH
Confidence 8887543
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=5.7e-06 Score=72.22 Aligned_cols=62 Identities=16% Similarity=0.075 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHH
Q 013299 295 ATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLM 358 (446)
Q Consensus 295 ~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~l 358 (446)
++..+.|+....+++ +++|.+-.++...+.+|.++..+++|+..|++.++++|... ++....
T Consensus 147 l~k~e~aI~dcsKai-el~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~-ear~~i 208 (271)
T KOG4234|consen 147 LRKWESAIEDCSKAI-ELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRR-EAREAI 208 (271)
T ss_pred hhhHHHHHHHHHhhH-hcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchH-HHHHHH
Confidence 356789999999999 99999999999999999999999999999999999999873 554433
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=98.36 E-value=9.1e-06 Score=70.20 Aligned_cols=84 Identities=12% Similarity=0.035 Sum_probs=56.7
Q ss_pred HHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-----------HHHHHHHH
Q 013299 272 TANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRK-----------LNAAHYYA 340 (446)
Q Consensus 272 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~-----------~~~A~~~~ 340 (446)
.++++-|.++...+.+.. ..+....+++|+.-|++|+ .++|+..++++++|.+|...+. +++|..+|
T Consensus 26 dnL~~WG~ALLELAqfk~-g~es~~miedAisK~eeAL-~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~F 103 (186)
T PF06552_consen 26 DNLTNWGGALLELAQFKQ-GPESKKMIEDAISKFEEAL-KINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYF 103 (186)
T ss_dssp HHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHH-HH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHHHH-hcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHH
Confidence 444444444444332211 0123457899999999999 9999999999999999977643 78899999
Q ss_pred HHHHhhcCCCCHHHHHHH
Q 013299 341 KMLLKLEGGSNLKGWLLM 358 (446)
Q Consensus 341 ~~al~l~P~~~~~~~~~l 358 (446)
++|+.++|++. ..+..|
T Consensus 104 qkAv~~~P~ne-~Y~ksL 120 (186)
T PF06552_consen 104 QKAVDEDPNNE-LYRKSL 120 (186)
T ss_dssp HHHHHH-TT-H-HHHHHH
T ss_pred HHHHhcCCCcH-HHHHHH
Confidence 99999999983 444333
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00014 Score=79.33 Aligned_cols=243 Identities=9% Similarity=-0.009 Sum_probs=186.2
Q ss_pred HHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCC-CCCcHH----HHHHHHHHHHHCCChHHHHHHHHHHhcCCC
Q 013299 152 VALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPG-IINRKE----RYHILALCYYGAGEDLVALNLLRTLLSGSE 226 (446)
Q Consensus 152 ~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~-~p~~~~----~~~~lg~~~~~~g~~~eA~~~~~~al~~~~ 226 (446)
..+.-+|+++-.|...-..+...++.++|.+..++|+.. ++...+ .|..+-++...-|.-+.-...|++|.+ -.
T Consensus 1449 rlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq-yc 1527 (1710)
T KOG1070|consen 1449 RLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ-YC 1527 (1710)
T ss_pred HHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH-hc
Confidence 445667999999998888888999999999999999864 455544 455555555555766777899999993 23
Q ss_pred CCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHH
Q 013299 227 DPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALV 306 (446)
Q Consensus 227 ~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~ 306 (446)
+| ..+|..+.+++ ...+++++|.++++..++..... ...|..+|..+..+ ++-++|...+.
T Consensus 1528 d~--~~V~~~L~~iy-~k~ek~~~A~ell~~m~KKF~q~-----~~vW~~y~~fLl~~-----------ne~~aa~~lL~ 1588 (1710)
T KOG1070|consen 1528 DA--YTVHLKLLGIY-EKSEKNDEADELLRLMLKKFGQT-----RKVWIMYADFLLRQ-----------NEAEAARELLK 1588 (1710)
T ss_pred ch--HHHHHHHHHHH-HHhhcchhHHHHHHHHHHHhcch-----hhHHHHHHHHHhcc-----------cHHHHHHHHHH
Confidence 33 34566677785 45688999999999999987632 46888888887553 45678899999
Q ss_pred HHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhc--
Q 013299 307 SAARSTNMR--DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQT-- 382 (446)
Q Consensus 307 ~al~~~~P~--~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-- 382 (446)
+|+ +--|. +.+..-.-+.+-++.|+-+.+...|+-.+.-.|.- ...|.-+...-.++|+.+.+...|++++.+.
T Consensus 1589 rAL-~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKR-tDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1589 RAL-KSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKR-TDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred HHH-hhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccc-hhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 999 99999 77888888999999999999999999999999998 5999999999999999999999999999764
Q ss_pred CCCCcHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHH
Q 013299 383 GKWEQGELLRTKAKVQLVQ-GQLKGAVETYTHLLAAL 418 (446)
Q Consensus 383 p~~~~~~~~~~~a~~~~~~-g~~~eA~~~~~~~l~l~ 418 (446)
| .....+|.+=.-|.+. |+-......=.+|.+..
T Consensus 1667 ~--kkmKfffKkwLeyEk~~Gde~~vE~VKarA~EYv 1701 (1710)
T KOG1070|consen 1667 I--KKMKFFFKKWLEYEKSHGDEKNVEYVKARAKEYV 1701 (1710)
T ss_pred h--hHhHHHHHHHHHHHHhcCchhhHHHHHHHHHHHH
Confidence 5 4555555554444333 44433333334555543
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00021 Score=74.99 Aligned_cols=230 Identities=13% Similarity=0.005 Sum_probs=122.5
Q ss_pred cCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChH
Q 013299 133 VPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDL 212 (446)
Q Consensus 133 ~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 212 (446)
...+++..|+... +.++++.|+.+-+....|..+.++|+.++|..+++..-...+++....-.+-.+|.++|+++
T Consensus 20 ld~~qfkkal~~~-----~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 20 LDSSQFKKALAKL-----GKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred hhhHHHHHHHHHH-----HHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhh
Confidence 3445666666553 56677777777777777777777777777777777666666667777777777777777777
Q ss_pred HHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhh
Q 013299 213 VALNLLRTLLSGSEDPKCLPALLIASKICGEYPDL----AEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVA 288 (446)
Q Consensus 213 eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~----~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~ 288 (446)
+|..+|++++ ..+|+ -+..+.+- +++.+.+. -..|+..|+ ..|..+ ...|..+.... ++...
T Consensus 95 ~~~~~Ye~~~--~~~P~-eell~~lF-mayvR~~~yk~qQkaa~~LyK----~~pk~~----yyfWsV~Slil--qs~~~ 160 (932)
T KOG2053|consen 95 EAVHLYERAN--QKYPS-EELLYHLF-MAYVREKSYKKQQKAALQLYK----NFPKRA----YYFWSVISLIL--QSIFS 160 (932)
T ss_pred HHHHHHHHHH--hhCCc-HHHHHHHH-HHHHHHHHHHHHHHHHHHHHH----hCCccc----chHHHHHHHHH--HhccC
Confidence 7777777777 67777 33222111 11211122 223333333 123221 12233333322 22111
Q ss_pred hchHHHHHHHHHHHHHHHHHHHhhC-CCCHHHHHHH-HHHHHHcCCHHHHHHHHHH-HHhhcCCCCHHHH-HHHHHHHHH
Q 013299 289 ITDFDRATRQAKALQALVSAARSTN-MRDLSILYRL-SLEYAEQRKLNAAHYYAKM-LLKLEGGSNLKGW-LLMARILSA 364 (446)
Q Consensus 289 ~~~~~~~~~~~eAl~~~~~al~~~~-P~~~~a~~~l-g~~~~~~~~~~~A~~~~~~-al~l~P~~~~~~~-~~la~~~~~ 364 (446)
+......-...=|...+++.+ +.. +-...+=..| -.++..+|++++|...+.. -.+..+..+ ... ......+..
T Consensus 161 ~~~~~~~i~l~LA~~m~~~~l-~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~-~~l~~~~~dllk~ 238 (932)
T KOG2053|consen 161 ENELLDPILLALAEKMVQKLL-EKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSAN-LYLENKKLDLLKL 238 (932)
T ss_pred CcccccchhHHHHHHHHHHHh-ccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccc-hHHHHHHHHHHHH
Confidence 110001112344555666666 544 2222221111 2344556777777776632 223333332 333 233455566
Q ss_pred ccCHHHHHHHHHHHHhhcC
Q 013299 365 QKRYEDAETILNAALDQTG 383 (446)
Q Consensus 365 ~g~~~eA~~~~~~al~~~p 383 (446)
.+++.+-.+...+++...+
T Consensus 239 l~~w~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 239 LNRWQELFELSSRLLEKGN 257 (932)
T ss_pred hcChHHHHHHHHHHHHhCC
Confidence 6777777777777777776
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.31 E-value=9.2e-06 Score=67.97 Aligned_cols=88 Identities=10% Similarity=0.016 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC--HHHHHHHHHHHHHccC--
Q 013299 295 ATRQAKALQALVSAARSTNMRD---LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN--LKGWLLMARILSAQKR-- 367 (446)
Q Consensus 295 ~~~~~eAl~~~~~al~~~~P~~---~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~--~~~~~~la~~~~~~g~-- 367 (446)
.|++++|++.|+.+. ...|.. ..+.+.||.+|...+++++|+..+++.++++|.|+ .-+++..|.+++.+.+
T Consensus 23 ~~~Y~~A~~~le~L~-~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~ 101 (142)
T PF13512_consen 23 KGNYEEAIKQLEALD-TRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGS 101 (142)
T ss_pred hCCHHHHHHHHHHHH-hcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhH
Confidence 467999999999999 998876 47889999999999999999999999999999984 1578889999999887
Q ss_pred -------------HHHHHHHHHHHHhhcC
Q 013299 368 -------------YEDAETILNAALDQTG 383 (446)
Q Consensus 368 -------------~~eA~~~~~~al~~~p 383 (446)
..+|...|++.+...|
T Consensus 102 ~~~~~~~drD~~~~~~A~~~f~~lv~~yP 130 (142)
T PF13512_consen 102 LQSFFRSDRDPTPARQAFRDFEQLVRRYP 130 (142)
T ss_pred HhhhcccccCcHHHHHHHHHHHHHHHHCc
Confidence 8899999999999999
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.29 E-value=6.8e-07 Score=55.85 Aligned_cols=32 Identities=19% Similarity=0.106 Sum_probs=23.8
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 013299 305 LVSAARSTNMRDLSILYRLSLEYAEQRKLNAAH 337 (446)
Q Consensus 305 ~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~ 337 (446)
|++|+ +++|+|+.+|++||.+|...|++++|+
T Consensus 2 y~kAi-e~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAI-ELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHH-HHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 66777 777777777777777777777777775
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00026 Score=67.29 Aligned_cols=241 Identities=11% Similarity=-0.016 Sum_probs=135.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhCCCCCCcH-----HHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCC--Ch----HH
Q 013299 165 DHLSFAFSIAGDLSSLATQIEELLPGIINRK-----ERYHILALCYYGAGEDLVALNLLRTLLSGSEDPK--CL----PA 233 (446)
Q Consensus 165 ~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~--~~----~a 233 (446)
.+++..+.+.-++.+++++..--+.+-...+ ..+..+|.++..++-++++++.|+.|+ +..-+ ++ .+
T Consensus 87 lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~--~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 87 LNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKAL--RYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHH--HHhhccCCceeeeeh
Confidence 3444444444444444444433333321111 233445555555555555555555555 22221 11 12
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC---c--chhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHH
Q 013299 234 LLIASKICGEYPDLAEEGATFASRALECLGDG---C--DQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSA 308 (446)
Q Consensus 234 ~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~---~--~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~a 308 (446)
+..++.+ +.+..++++|+-+..+|.++...- + .-+...+++.+++++..+| +.-+|.++-+++
T Consensus 165 cv~Lgsl-f~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G-----------~LgdA~e~C~Ea 232 (518)
T KOG1941|consen 165 CVSLGSL-FAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLG-----------RLGDAMECCEEA 232 (518)
T ss_pred hhhHHHH-HHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhc-----------ccccHHHHHHHH
Confidence 2223322 333445555555555555543210 0 0122445666777776554 455666666666
Q ss_pred HHhhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC--C---CHHHHHHHHHHHHHccCHHH-----HH
Q 013299 309 ARSTN------MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG--S---NLKGWLLMARILSAQKRYED-----AE 372 (446)
Q Consensus 309 l~~~~------P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~--~---~~~~~~~la~~~~~~g~~~e-----A~ 372 (446)
. ++. |-.+..+.-+|.+|...|+.|.|...|+.|...-.. + ..+++...|.++....-... |+
T Consensus 233 ~-klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Cral 311 (518)
T KOG1941|consen 233 M-KLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRAL 311 (518)
T ss_pred H-HHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchh
Confidence 5 542 223445568899999999999999999999765432 1 02455555655555544444 88
Q ss_pred HHHHHHHhhcCC----CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Q 013299 373 TILNAALDQTGK----WEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQV 420 (446)
Q Consensus 373 ~~~~~al~~~p~----~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~ 420 (446)
+.-++++++... ---..++-.++.+|..+|.-++=-+.+.++-+....
T Consensus 312 e~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~~~e 363 (518)
T KOG1941|consen 312 EFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHECVEE 363 (518)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHH
Confidence 888888876541 012456778899999999999888888777665543
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.29 E-value=7e-06 Score=66.72 Aligned_cols=88 Identities=15% Similarity=0.025 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC---HHHHHHHHHHHHHccCHHHH
Q 013299 295 ATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN---LKGWLLMARILSAQKRYEDA 371 (446)
Q Consensus 295 ~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~---~~~~~~la~~~~~~g~~~eA 371 (446)
.|+.+.|++.|.+++ .+-|.++.+++|.+..+.-+|+.++|+..+++|+++..+.. -.++...|.+|..+|+-+.|
T Consensus 56 ~g~Ld~AlE~F~qal-~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~A 134 (175)
T KOG4555|consen 56 AGDLDGALELFGQAL-CLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAA 134 (175)
T ss_pred ccchHHHHHHHHHHH-HhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHH
Confidence 467899999999999 99999999999999999999999999999999999987642 14688899999999999999
Q ss_pred HHHHHHHHhhcC
Q 013299 372 ETILNAALDQTG 383 (446)
Q Consensus 372 ~~~~~~al~~~p 383 (446)
..-|+.|-++-.
T Consensus 135 R~DFe~AA~LGS 146 (175)
T KOG4555|consen 135 RADFEAAAQLGS 146 (175)
T ss_pred HHhHHHHHHhCC
Confidence 999998877754
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00097 Score=70.25 Aligned_cols=84 Identities=18% Similarity=0.066 Sum_probs=38.7
Q ss_pred CCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHH
Q 013299 175 GDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATF 254 (446)
Q Consensus 175 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~ 254 (446)
+++.+|.+...+.++..|+.+-+..--|.++.++|++++|..+++..- ...|++...+- ....||+++++.++|...
T Consensus 23 ~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~--~~~~~D~~tLq-~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALY--GLKGTDDLTLQ-FLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred HHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhc--cCCCCchHHHH-HHHHHHHHHhhhhHHHHH
Confidence 444555555555555555555555445555555555555554443332 33333222221 223344445555555555
Q ss_pred HHHHHHH
Q 013299 255 ASRALEC 261 (446)
Q Consensus 255 ~~~al~~ 261 (446)
|++++..
T Consensus 100 Ye~~~~~ 106 (932)
T KOG2053|consen 100 YERANQK 106 (932)
T ss_pred HHHHHhh
Confidence 5555553
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.3e-05 Score=73.87 Aligned_cols=95 Identities=16% Similarity=0.054 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC--HHHHHHHHHHHHHccCHH
Q 013299 295 ATRQAKALQALVSAARSTNMRD---LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN--LKGWLLMARILSAQKRYE 369 (446)
Q Consensus 295 ~~~~~eAl~~~~~al~~~~P~~---~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~--~~~~~~la~~~~~~g~~~ 369 (446)
.|+|.+|...|+.=+ ...|++ ++++|.||.+++.+|++++|...|..+++-.|+++ .++++.+|.++..+|+.+
T Consensus 154 sgdy~~A~~~F~~fi-~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 154 SGDYAEAEQAFQAFI-KKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred cCCHHHHHHHHHHHH-HcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 467899999999999 999997 58999999999999999999999999999988873 278999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCcHHHHH
Q 013299 370 DAETILNAALDQTGKWEQGELLR 392 (446)
Q Consensus 370 eA~~~~~~al~~~p~~~~~~~~~ 392 (446)
+|-.+++++++.+| +...+..
T Consensus 233 ~A~atl~qv~k~YP--~t~aA~~ 253 (262)
T COG1729 233 EACATLQQVIKRYP--GTDAAKL 253 (262)
T ss_pred HHHHHHHHHHHHCC--CCHHHHH
Confidence 99999999999999 6655443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00024 Score=65.13 Aligned_cols=198 Identities=15% Similarity=0.014 Sum_probs=129.6
Q ss_pred CcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChH---HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh
Q 013299 193 NRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLP---ALLIASKICGEYPDLAEEGATFASRALECLGDGCDQM 269 (446)
Q Consensus 193 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~---a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~ 269 (446)
..+..||+-|...++.|++++|+..|+... ...|..+. +.+.++...+. .+++++|+...++-+...|.++.
T Consensus 32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~--~~~p~s~~~~qa~l~l~yA~Yk-~~~y~~A~~~~drFi~lyP~~~n-- 106 (254)
T COG4105 32 LPASELYNEGLTELQKGNYEEAIKYFEALD--SRHPFSPYSEQAQLDLAYAYYK-NGEYDLALAYIDRFIRLYPTHPN-- 106 (254)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH--HcCCCCcccHHHHHHHHHHHHh-cccHHHHHHHHHHHHHhCCCCCC--
Confidence 457789999999999999999999999999 88888654 56666666555 68999999999999998877654
Q ss_pred hhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 013299 270 ESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG 349 (446)
Q Consensus 270 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~ 349 (446)
...+++..|.++...-.....+ .....+|+..|+..+ ..-|++.-+-..... +..++..+
T Consensus 107 ~dY~~YlkgLs~~~~i~~~~rD---q~~~~~A~~~f~~~i-~ryPnS~Ya~dA~~~-----------i~~~~d~L----- 166 (254)
T COG4105 107 ADYAYYLKGLSYFFQIDDVTRD---QSAARAAFAAFKELV-QRYPNSRYAPDAKAR-----------IVKLNDAL----- 166 (254)
T ss_pred hhHHHHHHHHHHhccCCccccC---HHHHHHHHHHHHHHH-HHCCCCcchhhHHHH-----------HHHHHHHH-----
Confidence 3567888888865543222111 234578999999999 999997533211111 11111111
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCC-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 013299 350 SNLKGWLLMARILSAQKRYEDAETILNAALDQTGKW-EQGELLRTKAKVQLVQGQLKGAVETYTHLLAAL 418 (446)
Q Consensus 350 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~ 418 (446)
+.-=+..|..|.+.|.+-.|+..++..++..|+. .-.+++..+..++..+|-.++|-.. .++|+.+
T Consensus 167 --A~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~-~~vl~~N 233 (254)
T COG4105 167 --AGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKT-AKVLGAN 233 (254)
T ss_pred --HHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHH-HHHHHhc
Confidence 1222345666666666666666666666665521 1245566666666666666666543 2344443
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=98.27 E-value=9.2e-05 Score=73.38 Aligned_cols=192 Identities=17% Similarity=0.101 Sum_probs=131.5
Q ss_pred HHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhc
Q 013299 200 ILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGI 279 (446)
Q Consensus 200 ~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~ 279 (446)
.+-.-.++..+...-++.-++|| +++|+.+.++..++. +...-..||..+++++++.. -..+|.
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eAL--ei~pdCAdAYILLAE---EeA~Ti~Eae~l~rqAvkAg-----------E~~lg~ 236 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEAL--EINPDCADAYILLAE---EEASTIVEAEELLRQAVKAG-----------EASLGK 236 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHH--HhhhhhhHHHhhccc---ccccCHHHHHHHHHHHHHHH-----------HHhhch
Confidence 34444567778888999999999 999999999987653 23445789999999999842 122222
Q ss_pred hhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC-CHHHHH
Q 013299 280 SLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRD--LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS-NLKGWL 356 (446)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~--~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~-~~~~~~ 356 (446)
... .+....+-... ...+.+ +-+...||.+..+.|+.+||+++++..++..|.. ...++.
T Consensus 237 s~~----------------~~~~g~~~e~~-~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~Ire 299 (539)
T PF04184_consen 237 SQF----------------LQHHGHFWEAW-HRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRE 299 (539)
T ss_pred hhh----------------hhcccchhhhh-hccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHH
Confidence 111 11111111222 222233 3345688999999999999999999999988762 246889
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhh-cCCCCcHHHHHHHHHHHHH-hCC---------------HHHHHHHHHHHHHHHh
Q 013299 357 LMARILSAQKRYEDAETILNAALDQ-TGKWEQGELLRTKAKVQLV-QGQ---------------LKGAVETYTHLLAALQ 419 (446)
Q Consensus 357 ~la~~~~~~g~~~eA~~~~~~al~~-~p~~~~~~~~~~~a~~~~~-~g~---------------~~eA~~~~~~~l~l~~ 419 (446)
+|..++..+++|.++...+.+-=+. -| ....+.|..|.+..+ -|+ ...|++..+++++.+|
T Consensus 300 nLie~LLelq~Yad~q~lL~kYdDi~lp--kSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNP 377 (539)
T PF04184_consen 300 NLIEALLELQAYADVQALLAKYDDISLP--KSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNP 377 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHhccccCC--chHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCC
Confidence 9999999999999998888775333 25 467777777665533 121 2357899999999998
Q ss_pred hhhhhcc
Q 013299 420 VQTKTFS 426 (446)
Q Consensus 420 ~~~~~~~ 426 (446)
+-++--.
T Consensus 378 HVp~YLL 384 (539)
T PF04184_consen 378 HVPKYLL 384 (539)
T ss_pred CCchhhh
Confidence 8554433
|
The molecular function of this protein is uncertain. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.0038 Score=60.24 Aligned_cols=254 Identities=15% Similarity=0.057 Sum_probs=180.9
Q ss_pred HHHHHhCChHHHHHHHHHHhCCCCCCChHHHHHHHHHHHH--HHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHH
Q 013299 71 ELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAI--FLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMIL 148 (446)
Q Consensus 71 ~~~~~~g~~~eA~~~y~~al~~~~~~~~~~~~~l~~~~a~--~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~ 148 (446)
..-+-.|++++|-+-|.-.+. ||+. +.++. +++.. ...|..+.|+..-
T Consensus 128 Qaal~eG~~~~Ar~kfeAMl~-----dPEt-----RllGLRgLyleA-----------------qr~GareaAr~yA--- 177 (531)
T COG3898 128 QAALLEGDYEDARKKFEAMLD-----DPET-----RLLGLRGLYLEA-----------------QRLGAREAARHYA--- 177 (531)
T ss_pred HHHHhcCchHHHHHHHHHHhc-----ChHH-----HHHhHHHHHHHH-----------------HhcccHHHHHHHH---
Confidence 456779999999999999998 5653 22221 11111 1246677777653
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCC---CCCCcHH-----HHHHHHHHHHHCCChHHHHHHHHH
Q 013299 149 LRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLP---GIINRKE-----RYHILALCYYGAGEDLVALNLLRT 220 (446)
Q Consensus 149 ~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~---~~p~~~~-----~~~~lg~~~~~~g~~~eA~~~~~~ 220 (446)
+.+..+.|.-++++.-.-...+..|+++.|++..+.... +.++-.+ .....+..+.. -+...|...-.+
T Consensus 178 --e~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ld-adp~~Ar~~A~~ 254 (531)
T COG3898 178 --ERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLD-ADPASARDDALE 254 (531)
T ss_pred --HHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhc-CChHHHHHHHHH
Confidence 455677899999999999999999999999998865543 2333322 12222333332 357789999999
Q ss_pred HhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHH
Q 013299 221 LLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAK 300 (446)
Q Consensus 221 al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~e 300 (446)
++ ++.|+...+-+..+..++. .|+..++-..++.+-+. .|+++ .+..|... ..|... ..
T Consensus 255 a~--KL~pdlvPaav~AAralf~-d~~~rKg~~ilE~aWK~-ePHP~--ia~lY~~a-----r~gdta----------~d 313 (531)
T COG3898 255 AN--KLAPDLVPAAVVAARALFR-DGNLRKGSKILETAWKA-EPHPD--IALLYVRA-----RSGDTA----------LD 313 (531)
T ss_pred Hh--hcCCccchHHHHHHHHHHh-ccchhhhhhHHHHHHhc-CCChH--HHHHHHHh-----cCCCcH----------HH
Confidence 99 8999998888777777655 68888999999999984 45542 12222211 111100 01
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHc-cCHHHHHHHHHHHH
Q 013299 301 ALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQ-KRYEDAETILNAAL 379 (446)
Q Consensus 301 Al~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~-g~~~eA~~~~~~al 379 (446)
=++-.++.. .+.|+|.+..+..+..-...|++..|..--+.+..+.|.. .++..|+.|.... |+-.++..++-+++
T Consensus 314 RlkRa~~L~-slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre--s~~lLlAdIeeAetGDqg~vR~wlAqav 390 (531)
T COG3898 314 RLKRAKKLE-SLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE--SAYLLLADIEEAETGDQGKVRQWLAQAV 390 (531)
T ss_pred HHHHHHHHH-hcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh--hHHHHHHHHHhhccCchHHHHHHHHHHh
Confidence 122234455 7899999999999999999999999999999999999984 7888999998776 99999999999999
Q ss_pred hh
Q 013299 380 DQ 381 (446)
Q Consensus 380 ~~ 381 (446)
+.
T Consensus 391 ~A 392 (531)
T COG3898 391 KA 392 (531)
T ss_pred cC
Confidence 74
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.3e-06 Score=58.19 Aligned_cols=41 Identities=17% Similarity=0.114 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHH
Q 013299 162 SILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILA 202 (446)
Q Consensus 162 ~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 202 (446)
+++..+|.++...|++++|++.|+++++.+|+++++|..||
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 44555555555555555555555555555555555555554
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.8e-06 Score=57.57 Aligned_cols=42 Identities=17% Similarity=0.283 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHH
Q 013299 318 SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMAR 360 (446)
Q Consensus 318 ~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~ 360 (446)
.+++.+|.+|..+|++++|+..|+++++.+|+++ .+|..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~-~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDP-EAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH-HHHHHhhh
Confidence 4666777777777777777777777777777763 67766654
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.23 E-value=6.4e-07 Score=55.98 Aligned_cols=33 Identities=24% Similarity=0.208 Sum_probs=30.0
Q ss_pred HHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHH
Q 013299 183 QIEELLPGIINRKERYHILALCYYGAGEDLVAL 215 (446)
Q Consensus 183 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~ 215 (446)
+|+++|+++|+++.+|++||.+|...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 478999999999999999999999999999986
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.20 E-value=5.1e-06 Score=74.42 Aligned_cols=103 Identities=14% Similarity=0.005 Sum_probs=94.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhC
Q 013299 323 LSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQG 402 (446)
Q Consensus 323 lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g 402 (446)
-|.-+....+|+.|+.+|.+|+.++|..+ ..|.+.+.++++.++++.+...+.+|+++.| +....+|.+|..+....
T Consensus 16 ~gnk~f~~k~y~~ai~~y~raI~~nP~~~-~Y~tnralchlk~~~~~~v~~dcrralql~~--N~vk~h~flg~~~l~s~ 92 (284)
T KOG4642|consen 16 QGNKCFIPKRYDDAIDCYSRAICINPTVA-SYYTNRALCHLKLKHWEPVEEDCRRALQLDP--NLVKAHYFLGQWLLQSK 92 (284)
T ss_pred ccccccchhhhchHHHHHHHHHhcCCCcc-hhhhhHHHHHHHhhhhhhhhhhHHHHHhcCh--HHHHHHHHHHHHHHhhc
Confidence 35566778899999999999999999984 9999999999999999999999999999999 88999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhhhhhhccCC
Q 013299 403 QLKGAVETYTHLLAALQVQTKTFSSD 428 (446)
Q Consensus 403 ~~~eA~~~~~~~l~l~~~~~~~~~~~ 428 (446)
.+++|+..+.++.++...+..+++.+
T Consensus 93 ~~~eaI~~Lqra~sl~r~~~~~~~~d 118 (284)
T KOG4642|consen 93 GYDEAIKVLQRAYSLLREQPFTFGDD 118 (284)
T ss_pred cccHHHHHHHHHHHHHhcCCCCCcch
Confidence 99999999999999998877776543
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00028 Score=64.36 Aligned_cols=124 Identities=16% Similarity=0.136 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----hcCC-CCHHHHHHHHHHHHHccCHH
Q 013299 296 TRQAKALQALVSAARSTN-MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLK----LEGG-SNLKGWLLMARILSAQKRYE 369 (446)
Q Consensus 296 ~~~~eAl~~~~~al~~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~----l~P~-~~~~~~~~la~~~~~~g~~~ 369 (446)
+.|.=.+..+.+++ +.+ |.+|...-.||.+-.+.||.+.|..+|++.-+ ++.. +...+..+.+.++.-+++|.
T Consensus 191 kEy~iS~d~~~~vi-~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a 269 (366)
T KOG2796|consen 191 KEYVLSVDAYHSVI-KYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFA 269 (366)
T ss_pred hhhhhhHHHHHHHH-HhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchH
Confidence 45677888999999 887 77888889999999999999999999995433 3321 11367788899999999999
Q ss_pred HHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhh
Q 013299 370 DAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQT 422 (446)
Q Consensus 370 eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~ 422 (446)
+|...+++.+..+| .++.+-.++|.|++-.|+..+|++..+.++++.|..+
T Consensus 270 ~a~r~~~~i~~~D~--~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 270 EAHRFFTEILRMDP--RNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred HHHHHHhhccccCC--CchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 99999999999999 8889999999999999999999999999999987644
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.0035 Score=65.56 Aligned_cols=27 Identities=26% Similarity=0.398 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 013299 388 GELLRTKAKVQLVQGQLKGAVETYTHL 414 (446)
Q Consensus 388 ~~~~~~~a~~~~~~g~~~eA~~~~~~~ 414 (446)
..++..+|.+..++|.|-.|.+-|.++
T Consensus 1145 ~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1145 KQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 466778899999999999988877665
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.014 Score=56.55 Aligned_cols=248 Identities=14% Similarity=0.028 Sum_probs=169.9
Q ss_pred CCcHHHHHHHHHHHHHHHHhhcCCCCHHHH--HHHHH--HHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCC
Q 013299 135 RNNIEEAILLLMILLRKVALKRIEWDPSIL--DHLSF--AFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGE 210 (446)
Q Consensus 135 ~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~--~~lg~--~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 210 (446)
.|+++.|..-| +.. -++|+.. -+.|. .-.+.|..+.|+.+-+++-...|.-+.++...-......|+
T Consensus 133 eG~~~~Ar~kf-----eAM----l~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gd 203 (531)
T COG3898 133 EGDYEDARKKF-----EAM----LDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGD 203 (531)
T ss_pred cCchHHHHHHH-----HHH----hcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCC
Confidence 57788887654 222 2334432 23333 33467999999999999999999999999988888899999
Q ss_pred hHHHHHHHHHHhc-CCCCCCChH---HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhh
Q 013299 211 DLVALNLLRTLLS-GSEDPKCLP---ALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSK 286 (446)
Q Consensus 211 ~~eA~~~~~~al~-~~~~P~~~~---a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~ 286 (446)
++.|+++.+.... +.+.|+-.+ +.++.++..-.-.-+...|......++++ .|+. .-+-..-+..++.
T Consensus 204 Wd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL-~pdl----vPaav~AAralf~--- 275 (531)
T COG3898 204 WDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL-APDL----VPAAVVAARALFR--- 275 (531)
T ss_pred hHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc-CCcc----chHHHHHHHHHHh---
Confidence 9999999876542 024454322 22222222222233567788888888884 3332 1222333344433
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH---HhhcCCCCHHHHHHHHHHHH
Q 013299 287 VAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKML---LKLEGGSNLKGWLLMARILS 363 (446)
Q Consensus 287 ~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~a---l~l~P~~~~~~~~~la~~~~ 363 (446)
.|+..++-..++.+- +.+|+- .++.+|....--|.++..++++ .++.|++ .++.+..+..-.
T Consensus 276 --------d~~~rKg~~ilE~aW-K~ePHP-----~ia~lY~~ar~gdta~dRlkRa~~L~slk~nn-aes~~~va~aAl 340 (531)
T COG3898 276 --------DGNLRKGSKILETAW-KAEPHP-----DIALLYVRARSGDTALDRLKRAKKLESLKPNN-AESSLAVAEAAL 340 (531)
T ss_pred --------ccchhhhhhHHHHHH-hcCCCh-----HHHHHHHHhcCCCcHHHHHHHHHHHHhcCccc-hHHHHHHHHHHH
Confidence 356788889999999 888874 2344444444444555555544 5678998 599999999999
Q ss_pred HccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHH
Q 013299 364 AQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQ-GQLKGAVETYTHLLAA 417 (446)
Q Consensus 364 ~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~-g~~~eA~~~~~~~l~l 417 (446)
.-|+|..|..--+.+....| ...++..++.+.... |+-.+......+++.-
T Consensus 341 da~e~~~ARa~Aeaa~r~~p---res~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 341 DAGEFSAARAKAEAAAREAP---RESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hccchHHHHHHHHHHhhhCc---hhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 99999999999999999998 557788889888766 9999999998888875
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.99 E-value=1.1e-05 Score=50.32 Aligned_cols=32 Identities=22% Similarity=0.286 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 013299 318 SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG 349 (446)
Q Consensus 318 ~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~ 349 (446)
.+|+++|.++..+|++++|+..|++|++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45556666666666666666666666666654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00043 Score=66.10 Aligned_cols=125 Identities=12% Similarity=0.058 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHH
Q 013299 294 RATRQAKALQALVSAARSTNMRDLSILYRLSLEYAE-QRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAE 372 (446)
Q Consensus 294 ~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~-~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~ 372 (446)
|.+..+.|...|.+|. +..+-..++|...|.+-.. .++.+.|...|+++++..|.+ ...|......+...|+.+.|.
T Consensus 13 r~~g~~~aR~vF~~a~-~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~-~~~~~~Y~~~l~~~~d~~~aR 90 (280)
T PF05843_consen 13 RTEGIEAARKVFKRAR-KDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSD-PDFWLEYLDFLIKLNDINNAR 90 (280)
T ss_dssp HHHHHHHHHHHHHHHH-CCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHTT-HHHHH
T ss_pred HhCChHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHhCcHHHHH
Confidence 3455899999999999 8888899999999999777 567777999999999999999 599999999999999999999
Q ss_pred HHHHHHHhhcCCCC-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Q 013299 373 TILNAALDQTGKWE-QGELLRTKAKVQLVQGQLKGAVETYTHLLAALQV 420 (446)
Q Consensus 373 ~~~~~al~~~p~~~-~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~ 420 (446)
..|++++..-|... ...+|-.........|+.+.....+++..++.|.
T Consensus 91 ~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 91 ALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 99999998877211 2367888889999999999999999999999876
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.95 E-value=2e-05 Score=48.99 Aligned_cols=33 Identities=21% Similarity=0.275 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Q 013299 318 SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS 350 (446)
Q Consensus 318 ~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~ 350 (446)
.+++.+|.++..+|++++|+.+|+++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 455666666666666666666666666666653
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0011 Score=65.98 Aligned_cols=213 Identities=14% Similarity=0.017 Sum_probs=135.7
Q ss_pred hcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHH
Q 013299 173 IAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGA 252 (446)
Q Consensus 173 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~ 252 (446)
+..++..-++.-.+|++++|+-+++|.-|+.- ...-..||+..|++++ +....... .... ....|..
T Consensus 180 RERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAv--kAgE~~lg----~s~~-~~~~g~~---- 246 (539)
T PF04184_consen 180 RERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAV--KAGEASLG----KSQF-LQHHGHF---- 246 (539)
T ss_pred hcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHH--HHHHHhhc----hhhh-hhcccch----
Confidence 45677788888899999999999999877753 2345689999999999 32221110 0000 0111111
Q ss_pred HHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHc
Q 013299 253 TFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMR--DLSILYRLSLEYAEQ 330 (446)
Q Consensus 253 ~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~--~~~a~~~lg~~~~~~ 330 (446)
-..+. ..+......+...+++|..+ .|+.+||++.|+..+ +..|. +..++++|-.++..+
T Consensus 247 ---~e~~~---~Rdt~~~~y~KrRLAmCark-----------lGr~~EAIk~~rdLl-ke~p~~~~l~IrenLie~LLel 308 (539)
T PF04184_consen 247 ---WEAWH---RRDTNVLVYAKRRLAMCARK-----------LGRLREAIKMFRDLL-KEFPNLDNLNIRENLIEALLEL 308 (539)
T ss_pred ---hhhhh---ccccchhhhhHHHHHHHHHH-----------hCChHHHHHHHHHHH-hhCCccchhhHHHHHHHHHHhc
Confidence 01111 00111224556678888755 467899999999999 88776 567999999999999
Q ss_pred CCHHHHHHHHHHHHhhc-CCCCHHHHHHHHHHHHHc-cC---------------HHHHHHHHHHHHhhcCCCCcHHHHHH
Q 013299 331 RKLNAAHYYAKMLLKLE-GGSNLKGWLLMARILSAQ-KR---------------YEDAETILNAALDQTGKWEQGELLRT 393 (446)
Q Consensus 331 ~~~~~A~~~~~~al~l~-P~~~~~~~~~la~~~~~~-g~---------------~~eA~~~~~~al~~~p~~~~~~~~~~ 393 (446)
+++.++...+.+==.+. |+. +...+.-|.+..+. ++ -..|++.+.+|++.|| .-+..+.-
T Consensus 309 q~Yad~q~lL~kYdDi~lpkS-Ati~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNP--HVp~YLLe 385 (539)
T PF04184_consen 309 QAYADVQALLAKYDDISLPKS-ATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNP--HVPKYLLE 385 (539)
T ss_pred CCHHHHHHHHHHhccccCCch-HHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCC--CCchhhhc
Confidence 99999999998854332 554 34444444443221 11 1357789999999999 54433221
Q ss_pred H-H-----HHHHHhCCHHHHHHHHHHHHHHHhh
Q 013299 394 K-A-----KVQLVQGQLKGAVETYTHLLAALQV 420 (446)
Q Consensus 394 ~-a-----~~~~~~g~~~eA~~~~~~~l~l~~~ 420 (446)
+ . .-..+.|+ .||+.+---.+..|+.
T Consensus 386 ~K~LilPPehilkrGD-SEAiaYAf~hL~hWk~ 417 (539)
T PF04184_consen 386 MKSLILPPEHILKRGD-SEAIAYAFFHLQHWKR 417 (539)
T ss_pred cCCCCCChHHhcCCCc-HHHHHHHHHHHHHHhc
Confidence 1 1 11344564 8888887777777765
|
The molecular function of this protein is uncertain. |
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.88 E-value=1.6e-05 Score=78.25 Aligned_cols=92 Identities=11% Similarity=0.013 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHH
Q 013299 296 TRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETIL 375 (446)
Q Consensus 296 ~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~ 375 (446)
+.++.|+..|.+|+ +++|+.+..+-+.+.++.+.+++..|+..+.+|++++|.. ..+++..|...+.++++.+|...+
T Consensus 18 ~~fd~avdlysKaI-~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~-~K~Y~rrg~a~m~l~~~~~A~~~l 95 (476)
T KOG0376|consen 18 KVFDVAVDLYSKAI-ELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTY-IKAYVRRGTAVMALGEFKKALLDL 95 (476)
T ss_pred chHHHHHHHHHHHH-hcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchh-hheeeeccHHHHhHHHHHHHHHHH
Confidence 56899999999999 9999999999999999999999999999999999999999 599999999999999999999999
Q ss_pred HHHHhhcCCCCcHHHH
Q 013299 376 NAALDQTGKWEQGELL 391 (446)
Q Consensus 376 ~~al~~~p~~~~~~~~ 391 (446)
++...+.| +++.+.
T Consensus 96 ~~~~~l~P--nd~~~~ 109 (476)
T KOG0376|consen 96 EKVKKLAP--NDPDAT 109 (476)
T ss_pred HHhhhcCc--CcHHHH
Confidence 99999999 665544
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0035 Score=61.41 Aligned_cols=181 Identities=17% Similarity=0.097 Sum_probs=117.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhhCCC----CCCcHHHHHHHHHHHHH---CCChHHHHHHHHHHhcCCCCCCChH
Q 013299 160 DPSILDHLSFAFSIAGDLSSLATQIEELLPG----IINRKERYHILALCYYG---AGEDLVALNLLRTLLSGSEDPKCLP 232 (446)
Q Consensus 160 ~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~---~g~~~eA~~~~~~al~~~~~P~~~~ 232 (446)
++++..++-..|....+|+.=++..+..-.+ -++.+...+.+|.++.+ .|+.++|+..+..++. ...+.+++
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~-~~~~~~~d 218 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLE-SDENPDPD 218 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHh-ccCCCChH
Confidence 4566677778888888888888887777666 56677788888999888 8899999999888553 56666777
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhh
Q 013299 233 ALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARST 312 (446)
Q Consensus 233 a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~ 312 (446)
.+-..|.++-. ..++....+ ....++|+..|+++- ++
T Consensus 219 ~~gL~GRIyKD-------------~~~~s~~~d-----------------------------~~~ldkAi~~Y~kgF-e~ 255 (374)
T PF13281_consen 219 TLGLLGRIYKD-------------LFLESNFTD-----------------------------RESLDKAIEWYRKGF-EI 255 (374)
T ss_pred HHHHHHHHHHH-------------HHHHcCccc-----------------------------hHHHHHHHHHHHHHH-cC
Confidence 77666666321 011100001 123688999999999 99
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hh----------cCCCCHHHHH--HHHHHHHHccCHHHHHHHHHHHH
Q 013299 313 NMRDLSILYRLSLEYAEQRKLNAAHYYAKMLL-KL----------EGGSNLKGWL--LMARILSAQKRYEDAETILNAAL 379 (446)
Q Consensus 313 ~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al-~l----------~P~~~~~~~~--~la~~~~~~g~~~eA~~~~~~al 379 (446)
+|+....- |++.++...|...+.....++.. .+ ++. . ..|. .++.+....|++++|+.++++++
T Consensus 256 ~~~~Y~GI-N~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~-~-dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~ 332 (374)
T PF13281_consen 256 EPDYYSGI-NAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM-Q-DYWDVATLLEASVLAGDYEKAIQAAEKAF 332 (374)
T ss_pred CccccchH-HHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc-c-cHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 97554333 45555555554333322222221 11 122 1 3444 45566677899999999999999
Q ss_pred hhcCCCCcHH
Q 013299 380 DQTGKWEQGE 389 (446)
Q Consensus 380 ~~~p~~~~~~ 389 (446)
+..| +.+.
T Consensus 333 ~l~~--~~W~ 340 (374)
T PF13281_consen 333 KLKP--PAWE 340 (374)
T ss_pred hcCC--cchh
Confidence 9988 5443
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00024 Score=69.93 Aligned_cols=81 Identities=14% Similarity=0.106 Sum_probs=61.7
Q ss_pred ccCccccCCCcHHHHHHHHHHHHHHH--HhhcC--C---------CCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCC
Q 013299 127 QMGSSFVPRNNIEEAILLLMILLRKV--ALKRI--E---------WDPSILDHLSFAFSIAGDLSSLATQIEELLPGIIN 193 (446)
Q Consensus 127 ~~~~~~~~~~~~~eA~~~l~~~~~~~--~l~~~--p---------~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~ 193 (446)
++|-++...+.+.-++.++..+++.. -++.. | ..-++.++.|..+...|++-.|.+||.+++..--.
T Consensus 288 NlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~ 367 (696)
T KOG2471|consen 288 NLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHR 367 (696)
T ss_pred CcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhc
Confidence 35567788888888888887766421 11111 1 35678889999999999999999999999999889
Q ss_pred cHHHHHHHHHHHHH
Q 013299 194 RKERYHILALCYYG 207 (446)
Q Consensus 194 ~~~~~~~lg~~~~~ 207 (446)
+|..|..|+.+.+.
T Consensus 368 nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 368 NPRLWLRLAECCIM 381 (696)
T ss_pred CcHHHHHHHHHHHH
Confidence 99999999988654
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0014 Score=67.09 Aligned_cols=189 Identities=15% Similarity=0.055 Sum_probs=130.7
Q ss_pred HHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhh--hHHHHHhhchhHhhhhhhhchHHH
Q 013299 217 LLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQME--STANCLLGISLSAQSKVAITDFDR 294 (446)
Q Consensus 217 ~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~--~~a~~~lg~~~~~~~~~~~~~~~~ 294 (446)
.|.=++ .+=|....-.+.. ..-.|+.+.++..+.++.+. +.-..++- ....++.+....- + .+ ..
T Consensus 179 ~f~L~l--SlLPp~~~kll~~----vGF~gdR~~GL~~L~~~~~~-~~i~~~la~L~LL~y~~~~~~~~-~----~~-~~ 245 (468)
T PF10300_consen 179 LFNLVL--SLLPPKVLKLLSF----VGFSGDRELGLRLLWEASKS-ENIRSPLAALVLLWYHLVVPSFL-G----ID-GE 245 (468)
T ss_pred HHHHHH--HhCCHHHHHHHhh----cCcCCcHHHHHHHHHHHhcc-CCcchHHHHHHHHHHHHHHHHHc-C----Cc-cc
Confidence 445555 4455443322221 23457888899988888762 21100010 1111111111100 0 00 01
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC---CHHHHHHHHHHHHHccCHHHH
Q 013299 295 ATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS---NLKGWLLMARILSAQKRYEDA 371 (446)
Q Consensus 295 ~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~---~~~~~~~la~~~~~~g~~~eA 371 (446)
....+.|.+.+.... +..|+.+-.++..|.++...|+.++|+..|++++....+. ..-+++-+|+++.-+++|++|
T Consensus 246 ~~~~~~a~~lL~~~~-~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 246 DVPLEEAEELLEEML-KRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred CCCHHHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 345688999999999 9999999999999999999999999999999998644332 125678899999999999999
Q ss_pred HHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHhh
Q 013299 372 ETILNAALDQTGKWEQGELLRTKAKVQLVQGQL-------KGAVETYTHLLAALQV 420 (446)
Q Consensus 372 ~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~-------~eA~~~~~~~l~l~~~ 420 (446)
..++.+.++.+. |......|..|.++...|+. ++|.+.++++-.+.++
T Consensus 325 ~~~f~~L~~~s~-WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k 379 (468)
T PF10300_consen 325 AEYFLRLLKESK-WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQK 379 (468)
T ss_pred HHHHHHHHhccc-cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhh
Confidence 999999998764 55666678889999999999 8888888877777643
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00064 Score=64.12 Aligned_cols=165 Identities=14% Similarity=0.026 Sum_probs=121.7
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhh
Q 013299 199 HILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLG 278 (446)
Q Consensus 199 ~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg 278 (446)
..-+.+++..|++.+|-...++.| .-.|.+.-++-+.-..++ ..|+.+.-...++|++...+++. +..+.++-.++
T Consensus 107 h~~aai~~~~g~~h~a~~~wdklL--~d~PtDlla~kfsh~a~f-y~G~~~~~k~ai~kIip~wn~dl-p~~sYv~Gmya 182 (491)
T KOG2610|consen 107 HAKAAILWGRGKHHEAAIEWDKLL--DDYPTDLLAVKFSHDAHF-YNGNQIGKKNAIEKIIPKWNADL-PCYSYVHGMYA 182 (491)
T ss_pred hhhHHHhhccccccHHHHHHHHHH--HhCchhhhhhhhhhhHHH-hccchhhhhhHHHHhccccCCCC-cHHHHHHHHHH
Confidence 334667888999999999999999 889999877654433333 35777788888888887645442 22334444444
Q ss_pred chhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC---CHHHH
Q 013299 279 ISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS---NLKGW 355 (446)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~---~~~~~ 355 (446)
.++ +..|.+++|.+.-++++ ++||.|.=+.-.++.++...++..++.+...+.-..--+. ...-|
T Consensus 183 FgL-----------~E~g~y~dAEk~A~ral-qiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNy 250 (491)
T KOG2610|consen 183 FGL-----------EECGIYDDAEKQADRAL-QINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNY 250 (491)
T ss_pred hhH-----------HHhccchhHHHHHHhhc-cCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhh
Confidence 444 34577899999999999 9999999999999999999999999998776653321111 01235
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHH
Q 013299 356 LLMARILSAQKRYEDAETILNAAL 379 (446)
Q Consensus 356 ~~la~~~~~~g~~~eA~~~~~~al 379 (446)
..-|..+...++|+.|+.+|++-+
T Consensus 251 WH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 251 WHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred HHHHHhhhcccchhHHHHHHHHHH
Confidence 567888899999999999998766
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.77 E-value=5.5e-05 Score=47.07 Aligned_cols=31 Identities=16% Similarity=0.201 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013299 353 KGWLLMARILSAQKRYEDAETILNAALDQTG 383 (446)
Q Consensus 353 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 383 (446)
.+|.++|.++..+|++++|+..|+++++++|
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 5677788888888888888888888888777
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00025 Score=64.03 Aligned_cols=123 Identities=15% Similarity=0.093 Sum_probs=91.9
Q ss_pred HHHHHHhHHHHHHhCChHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHH
Q 013299 63 NRAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAI 142 (446)
Q Consensus 63 ~~a~~~l~~~~~~~g~~~eA~~~y~~al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~ 142 (446)
..+++.-|+-++..|+++||+..|+.||.+ + .++- +. ..| |.. +=+
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~---l---------~~L~---lk----EkP--------------~e~-eW~ 223 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIIC---L---------RNLQ---LK----EKP--------------GEP-EWL 223 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHH---H---------HHHH---hc----cCC--------------CCh-HHH
Confidence 356777788889999999999999999886 0 1110 10 001 110 101
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHh
Q 013299 143 LLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLL 222 (446)
Q Consensus 143 ~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al 222 (446)
.+ + --....+.+...++...|++-++++....++..+|+|..++|..|.+....=+..+|..-|.++|
T Consensus 224 eL------d------k~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL 291 (329)
T KOG0545|consen 224 EL------D------KMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVL 291 (329)
T ss_pred HH------H------HhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 10 0 11123566788899999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCChHH
Q 013299 223 SGSEDPKCLPA 233 (446)
Q Consensus 223 ~~~~~P~~~~a 233 (446)
+++|.-..+
T Consensus 292 --~ldpslasv 300 (329)
T KOG0545|consen 292 --ELDPSLASV 300 (329)
T ss_pred --hcChhhHHH
Confidence 999975543
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00066 Score=62.02 Aligned_cols=138 Identities=13% Similarity=0.070 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHhcCCCC-CCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHH
Q 013299 197 RYHILALCYYGAGEDLVALNLLRTLLSGSED-PKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANC 275 (446)
Q Consensus 197 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~-P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~ 275 (446)
..|-+..++...|.|.-.+..+.+++ ..+ |..+...-.++.+.. +-|+.+.|..+++++-+....-
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi--~~~~e~~p~L~s~Lgr~~M-Q~GD~k~a~~yf~~vek~~~kL---------- 245 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVI--KYYPEQEPQLLSGLGRISM-QIGDIKTAEKYFQDVEKVTQKL---------- 245 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHH--HhCCcccHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHHhhh----------
Confidence 45567777788888888888888888 555 556655555555544 3577777777776554321100
Q ss_pred HhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHH
Q 013299 276 LLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGW 355 (446)
Q Consensus 276 ~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 355 (446)
.--..+..++.+.+.++.-++++.+|...|.+.+..||.++ .+.
T Consensus 246 -----------------------------------~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~-~a~ 289 (366)
T KOG2796|consen 246 -----------------------------------DGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNA-VAN 289 (366)
T ss_pred -----------------------------------hccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCch-hhh
Confidence 00011223344444455555555555555555555555553 555
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013299 356 LLMARILSAQKRYEDAETILNAALDQTG 383 (446)
Q Consensus 356 ~~la~~~~~~g~~~eA~~~~~~al~~~p 383 (446)
++.|.|++-+|+..+|++.++.++...|
T Consensus 290 NnKALcllYlg~l~DAiK~~e~~~~~~P 317 (366)
T KOG2796|consen 290 NNKALCLLYLGKLKDALKQLEAMVQQDP 317 (366)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 5555555555555555555555555555
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0019 Score=61.07 Aligned_cols=149 Identities=14% Similarity=0.042 Sum_probs=109.8
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhh-CCCCH---HHH
Q 013299 245 PDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARST-NMRDL---SIL 320 (446)
Q Consensus 245 ~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~-~P~~~---~a~ 320 (446)
.|++-+|....++.++..|.+- .++-.--.+++. .|+.+.-...+++++ -. +|+-| -+.
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDl-----la~kfsh~a~fy-----------~G~~~~~k~ai~kIi-p~wn~dlp~~sYv~ 178 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDL-----LAVKFSHDAHFY-----------NGNQIGKKNAIEKII-PKWNADLPCYSYVH 178 (491)
T ss_pred cccccHHHHHHHHHHHhCchhh-----hhhhhhhhHHHh-----------ccchhhhhhHHHHhc-cccCCCCcHHHHHH
Confidence 4666677778889998766542 122222222222 234566777888888 55 77764 344
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCc-----HHHHHHHH
Q 013299 321 YRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQ-----GELLRTKA 395 (446)
Q Consensus 321 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~-----~~~~~~~a 395 (446)
-.++..+.+.|-|++|++..++++++||.+ .=+...++.|+.-.||++|+.+...+--.. |+. ..-|++-|
T Consensus 179 GmyaFgL~E~g~y~dAEk~A~ralqiN~~D-~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~---Wr~s~mlasHNyWH~A 254 (491)
T KOG2610|consen 179 GMYAFGLEECGIYDDAEKQADRALQINRFD-CWASHAKAHVLEMNGRHKEGKEFMYKTEDD---WRQSWMLASHNYWHTA 254 (491)
T ss_pred HHHHhhHHHhccchhHHHHHHhhccCCCcc-hHHHHHHHHHHHhcchhhhHHHHHHhcccc---hhhhhHHHhhhhHHHH
Confidence 567888899999999999999999999998 478888999999999999999988765332 222 23366788
Q ss_pred HHHHHhCCHHHHHHHHHHH
Q 013299 396 KVQLVQGQLKGAVETYTHL 414 (446)
Q Consensus 396 ~~~~~~g~~~eA~~~~~~~ 414 (446)
..+.+-+.++.|++.|.+-
T Consensus 255 l~~iE~aeye~aleIyD~e 273 (491)
T KOG2610|consen 255 LFHIEGAEYEKALEIYDRE 273 (491)
T ss_pred HhhhcccchhHHHHHHHHH
Confidence 8999999999999999763
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0017 Score=67.84 Aligned_cols=226 Identities=17% Similarity=0.076 Sum_probs=142.5
Q ss_pred ccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHH------------HHHHhhCCCCCCcHHH
Q 013299 130 SSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLA------------TQIEELLPGIINRKER 197 (446)
Q Consensus 130 ~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~------------~~~~~al~~~p~~~~~ 197 (446)
++|+..|+.++|.... +. -.+..+|.+++....+..+.+-|. ..++++.+ +|++.++
T Consensus 736 SfyvtiG~MD~AfksI-----~~-----IkS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q-~~~e~ea 804 (1416)
T KOG3617|consen 736 SFYVTIGSMDAAFKSI-----QF-----IKSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ-NGEEDEA 804 (1416)
T ss_pred eEEEEeccHHHHHHHH-----HH-----HhhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh-CCcchhh
Confidence 4677888888886532 11 124568888888777776666554 45666665 4444443
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHh
Q 013299 198 YHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLL 277 (446)
Q Consensus 198 ~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~l 277 (446)
..+.+-.++|..++|+.+|+++- +.| . ..-.|+..|.+++|.+..+.- +.......|++.
T Consensus 805 --kvAvLAieLgMlEeA~~lYr~ck--R~D-----L----lNKlyQs~g~w~eA~eiAE~~-------DRiHLr~Tyy~y 864 (1416)
T KOG3617|consen 805 --KVAVLAIELGMLEEALILYRQCK--RYD-----L----LNKLYQSQGMWSEAFEIAETK-------DRIHLRNTYYNY 864 (1416)
T ss_pred --HHHHHHHHHhhHHHHHHHHHHHH--HHH-----H----HHHHHHhcccHHHHHHHHhhc-------cceehhhhHHHH
Confidence 45777789999999999999988 322 1 122355567887777655311 111112233333
Q ss_pred hchhHhhhhhhhchHHHHHHHHHHHHHHHHH----------HHhhCC----------CCHHHHHHHHHHHHHcCCHHHHH
Q 013299 278 GISLSAQSKVAITDFDRATRQAKALQALVSA----------ARSTNM----------RDLSILYRLSLEYAEQRKLNAAH 337 (446)
Q Consensus 278 g~~~~~~~~~~~~~~~~~~~~~eAl~~~~~a----------l~~~~P----------~~~~a~~~lg~~~~~~~~~~~A~ 337 (446)
+.-+.. .++.+.|+++|+++ + .-+| .|+..|-.-|.-+...|+.|.|+
T Consensus 865 A~~Lea-----------r~Di~~AleyyEK~~~hafev~rmL-~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl 932 (1416)
T KOG3617|consen 865 AKYLEA-----------RRDIEAALEYYEKAGVHAFEVFRML-KEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAAL 932 (1416)
T ss_pred HHHHHh-----------hccHHHHHHHHHhcCChHHHHHHHH-HhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHH
Confidence 332222 22334444444432 1 1222 34455566677777788999999
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 013299 338 YYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHL 414 (446)
Q Consensus 338 ~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~ 414 (446)
.+|..| .-|+.+..|+.-+|+.++|-.+-+ .. .+..+-|++|..|...|++.+|+..|.++
T Consensus 933 ~~Y~~A---------~D~fs~VrI~C~qGk~~kAa~iA~-----es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 933 SFYSSA---------KDYFSMVRIKCIQGKTDKAARIAE-----ES--GDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred HHHHHh---------hhhhhheeeEeeccCchHHHHHHH-----hc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 888765 456667777888888888865543 23 56778899999999999999999877655
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.75 E-value=3.4e-05 Score=47.94 Aligned_cols=34 Identities=26% Similarity=0.400 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCC
Q 013299 195 KERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKC 230 (446)
Q Consensus 195 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~ 230 (446)
+++|+.+|.+++..|++++|+..|++++ .++|+|
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al--~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKAL--ELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHH--HHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHH--HHCcCC
Confidence 4577888888888888888888888888 778765
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.029 Score=58.32 Aligned_cols=59 Identities=20% Similarity=0.196 Sum_probs=41.1
Q ss_pred HHHccCHHHHHHH------HHHHHhhc---CCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Q 013299 362 LSAQKRYEDAETI------LNAALDQT---GKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQV 420 (446)
Q Consensus 362 ~~~~g~~~eA~~~------~~~al~~~---p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~ 420 (446)
+-+.|-..+|+.. |+-|.++. .+..-++.+..++..+...|++++|-..|-.+++++.-
T Consensus 960 lnk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaiklnty 1027 (1636)
T KOG3616|consen 960 LNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTY 1027 (1636)
T ss_pred HHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhcccc
Confidence 4555666666653 33333221 11135678889999999999999999999999998753
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.71 E-value=2.5e-05 Score=76.99 Aligned_cols=99 Identities=9% Similarity=-0.011 Sum_probs=90.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhC
Q 013299 323 LSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQG 402 (446)
Q Consensus 323 lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g 402 (446)
-+.....-+.++.|+..|.+|+.++|++ +..+-+.+..+.+.+.|..|+.-+.+|++.+| ....+|+.+|.+.+..+
T Consensus 10 ean~~l~~~~fd~avdlysKaI~ldpnc-a~~~anRa~a~lK~e~~~~Al~Da~kaie~dP--~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIELDPNC-AIYFANRALAHLKVESFGGALHDALKAIELDP--TYIKAYVRRGTAVMALG 86 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHhcCCcc-eeeechhhhhheeechhhhHHHHHHhhhhcCc--hhhheeeeccHHHHhHH
Confidence 3445566789999999999999999999 59999999999999999999999999999999 89999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhhhhhh
Q 013299 403 QLKGAVETYTHLLAALQVQTKT 424 (446)
Q Consensus 403 ~~~eA~~~~~~~l~l~~~~~~~ 424 (446)
++.+|+..|+....+.|+.+.+
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~ 108 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDA 108 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHH
Confidence 9999999999999999865544
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0014 Score=57.48 Aligned_cols=114 Identities=19% Similarity=0.219 Sum_probs=82.2
Q ss_pred HHHHHHHHHHhhCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC--HHHHHHHHHHHHHccCHHHHHHHH
Q 013299 301 ALQALVSAARSTNMRDLS---ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN--LKGWLLMARILSAQKRYEDAETIL 375 (446)
Q Consensus 301 Al~~~~~al~~~~P~~~~---a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~--~~~~~~la~~~~~~g~~~eA~~~~ 375 (446)
.....++-+ .-+|.+.- +-..++..+.+.|++++|+..++.++....|.. .-+-..||.++..+|.+++|+..+
T Consensus 71 ~~~~~ekf~-~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 71 SIAAAEKFV-QANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred hHHHHHHHH-hhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 334444445 55555443 234678888899999999999999887544431 134567899999999999999988
Q ss_pred HHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 013299 376 NAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAAL 418 (446)
Q Consensus 376 ~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~ 418 (446)
+.... +.| .+...-.+|.++...|+.++|...|+++++..
T Consensus 150 ~t~~~--~~w-~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 150 DTIKE--ESW-AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred hcccc--ccH-HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 76532 211 23445678999999999999999999999875
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00053 Score=61.98 Aligned_cols=106 Identities=11% Similarity=-0.001 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh--------hcCCCC---------HHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 013299 319 ILYRLSLEYAEQRKLNAAHYYAKMLLK--------LEGGSN---------LKGWLLMARILSAQKRYEDAETILNAALDQ 381 (446)
Q Consensus 319 a~~~lg~~~~~~~~~~~A~~~~~~al~--------l~P~~~---------~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 381 (446)
++-.-|.-++..|++.+|...|+.|+. ..|..+ .+.+.|+..++...|+|=++++.+...|..
T Consensus 180 ~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~ 259 (329)
T KOG0545|consen 180 VLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRH 259 (329)
T ss_pred HHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 334455666666667766666666643 234331 245667778888888888888888888888
Q ss_pred cCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhcc
Q 013299 382 TGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFS 426 (446)
Q Consensus 382 ~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~~~ 426 (446)
.| +|..++|.+|.+....=+.++|.+.+.++|++.|.-..+-.
T Consensus 260 ~~--~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVs 302 (329)
T KOG0545|consen 260 HP--GNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVS 302 (329)
T ss_pred CC--chHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHH
Confidence 88 78888888888888888888888888888888776555443
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.006 Score=54.99 Aligned_cols=136 Identities=14% Similarity=0.068 Sum_probs=88.0
Q ss_pred HHHHHHHCCChHHHHHHHHHHhcCCCCCCChHH------HHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHH
Q 013299 201 LALCYYGAGEDLVALNLLRTLLSGSEDPKCLPA------LLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTAN 274 (446)
Q Consensus 201 lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a------~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~ 274 (446)
-+.+| +.++.++|+.+++++| .+-.+.-.. +.-++.++-..+.+++.||.+|+.+-+-.... +...+.-.
T Consensus 80 A~~cy-kk~~~~eAv~cL~~ai--eIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~e-es~ssANK 155 (288)
T KOG1586|consen 80 AANCY-KKVDPEEAVNCLEKAI--EIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGE-ESVSSANK 155 (288)
T ss_pred HHHHh-hccChHHHHHHHHHHH--HHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcch-hhhhhHHH
Confidence 34444 4458888999888888 554443221 23455665556678999999999998854432 21111111
Q ss_pred HHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 013299 275 CLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLS-------ILYRLSLEYAEQRKLNAAHYYAKMLLKLE 347 (446)
Q Consensus 275 ~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~-------a~~~lg~~~~~~~~~~~A~~~~~~al~l~ 347 (446)
|+.+.+..+ -..++|.+|+..|+++. ...-+|+- .++.-|.++.-..+.-.+-..+++-..++
T Consensus 156 -----C~lKvA~ya----a~leqY~~Ai~iyeqva-~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~d 225 (288)
T KOG1586|consen 156 -----CLLKVAQYA----AQLEQYSKAIDIYEQVA-RSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELD 225 (288)
T ss_pred -----HHHHHHHHH----HHHHHHHHHHHHHHHHH-HHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcC
Confidence 222222111 24678999999999999 76666653 33566788887788888888888888899
Q ss_pred CCC
Q 013299 348 GGS 350 (446)
Q Consensus 348 P~~ 350 (446)
|..
T Consensus 226 P~F 228 (288)
T KOG1586|consen 226 PAF 228 (288)
T ss_pred Ccc
Confidence 976
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0035 Score=53.44 Aligned_cols=65 Identities=23% Similarity=0.241 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Q 013299 353 KGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQ 419 (446)
Q Consensus 353 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~ 419 (446)
.+...++..+...|++++|+..+++++..+| -+-.+|..+-.++..+|+..+|+..|++......
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP--~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~ 127 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDP--YDEEAYRLLMRALAAQGRRAEALRVYERYRRRLR 127 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST--T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 4556677888899999999999999999999 8889999999999999999999999999887764
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.042 Score=52.61 Aligned_cols=169 Identities=15% Similarity=0.070 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHC----CChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHcCCCcch
Q 013299 196 ERYHILALCYYGA----GEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEY---PDLAEEGATFASRALECLGDGCDQ 268 (446)
Q Consensus 196 ~~~~~lg~~~~~~----g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~---~~~~~eA~~~~~~al~~~~~~~~~ 268 (446)
.+.+.+|.+|... .+..+|...|+.+. +..++.+.+.+|.++..- ..+..+|..+|+++.+.-.+. .
T Consensus 74 ~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a----~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~--a 147 (292)
T COG0790 74 AALALLGQMYGAGKGVSRDKTKAADWYRCAA----ADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVE--A 147 (292)
T ss_pred HHHHHHHHHHHhccCccccHHHHHHHHHHHh----hcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChh--H
Confidence 4445555555442 23555666666443 445555555555554432 125566777777666632111 0
Q ss_pred hhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHH
Q 013299 269 MESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAE----QRKLNAAHYYAKMLL 344 (446)
Q Consensus 269 ~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~----~~~~~~A~~~~~~al 344 (446)
..+.+.+|.+|..-.... --......|+..|.++. ... ++.+.+++|.+|.. ..++.+|...|++|.
T Consensus 148 --~~~~~~l~~~~~~g~~~~----~~~~~~~~A~~~~~~aa-~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa 218 (292)
T COG0790 148 --ALAMYRLGLAYLSGLQAL----AVAYDDKKALYLYRKAA-ELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAA 218 (292)
T ss_pred --HHHHHHHHHHHHcChhhh----cccHHHHhHHHHHHHHH-Hhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHH
Confidence 122555555554321000 00112358999999998 666 89999999988865 348999999999998
Q ss_pred hhcCCCCHHHHHHHHHHHHHcc---------------CHHHHHHHHHHHHhhcC
Q 013299 345 KLEGGSNLKGWLLMARILSAQK---------------RYEDAETILNAALDQTG 383 (446)
Q Consensus 345 ~l~P~~~~~~~~~la~~~~~~g---------------~~~eA~~~~~~al~~~p 383 (446)
+... . .+++.++ ++...| +...|..++.++....+
T Consensus 219 ~~g~--~-~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 219 EQGD--G-AACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGF 268 (292)
T ss_pred HCCC--H-HHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCC
Confidence 8775 3 7888888 666666 55555555555554433
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0037 Score=59.65 Aligned_cols=134 Identities=7% Similarity=-0.077 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHH
Q 013299 197 RYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCL 276 (446)
Q Consensus 197 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~ 276 (446)
+|..+.....+.+..+.|...|++|+ ...+-...+|...|.+-+...++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~--~~~~~~~~vy~~~A~~E~~~~~d~---------------------------- 52 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRAR--KDKRCTYHVYVAYALMEYYCNKDP---------------------------- 52 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--CCCCS-THHHHHHHHHHHHTCS-H----------------------------
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHHhCCCH----------------------------
Confidence 45666666666666777777777777 444445555554443322222222
Q ss_pred hhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC--HHH
Q 013299 277 LGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN--LKG 354 (446)
Q Consensus 277 lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~--~~~ 354 (446)
+-|...|+.++ +.-|++.+.|......+...|+.+.|...|++++..-|... ...
T Consensus 53 ----------------------~~A~~Ife~gl-k~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~i 109 (280)
T PF05843_consen 53 ----------------------KRARKIFERGL-KKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKI 109 (280)
T ss_dssp ----------------------HHHHHHHHHHH-HHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHH
T ss_pred ----------------------HHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHH
Confidence 23445555555 55555555555544555555555555555555555444320 124
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013299 355 WLLMARILSAQKRYEDAETILNAALDQTG 383 (446)
Q Consensus 355 ~~~la~~~~~~g~~~eA~~~~~~al~~~p 383 (446)
|..........|+.+....+.+++.+..|
T Consensus 110 w~~~i~fE~~~Gdl~~v~~v~~R~~~~~~ 138 (280)
T PF05843_consen 110 WKKFIEFESKYGDLESVRKVEKRAEELFP 138 (280)
T ss_dssp HHHHHHHHHHHS-HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Confidence 55555555555555555555555555555
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0088 Score=55.96 Aligned_cols=152 Identities=16% Similarity=0.108 Sum_probs=103.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHH
Q 013299 160 DPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASK 239 (446)
Q Consensus 160 ~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~ 239 (446)
..+.-..-+..+...|++.+|...|..++..+|++.++-..|+.+|...|+.++|...+...= ....+. ..+.
T Consensus 133 ~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP--~~~~~~-~~~~---- 205 (304)
T COG3118 133 EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALP--LQAQDK-AAHG---- 205 (304)
T ss_pred HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCc--ccchhh-HHHH----
Confidence 334445566777889999999999999999999999999999999999999999988887633 111111 1110
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHH
Q 013299 240 ICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSI 319 (446)
Q Consensus 240 ~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a 319 (446)
....++.+.++-. .|+ ...+++.+ ..||+|.++
T Consensus 206 --------l~a~i~ll~qaa~-~~~-------------------------------------~~~l~~~~-aadPdd~~a 238 (304)
T COG3118 206 --------LQAQIELLEQAAA-TPE-------------------------------------IQDLQRRL-AADPDDVEA 238 (304)
T ss_pred --------HHHHHHHHHHHhc-CCC-------------------------------------HHHHHHHH-HhCCCCHHH
Confidence 1111333333332 111 12445566 789999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC--CHHHHHHHHHHHHHcc
Q 013299 320 LYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS--NLKGWLLMARILSAQK 366 (446)
Q Consensus 320 ~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~--~~~~~~~la~~~~~~g 366 (446)
.+.+|..+...|+.++|++.+-..++.+-+. + .+.-.+-.++...|
T Consensus 239 a~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~-~~Rk~lle~f~~~g 286 (304)
T COG3118 239 ALALADQLHLVGRNEAALEHLLALLRRDRGFEDG-EARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCc-HHHHHHHHHHHhcC
Confidence 9999999999999999999988887765432 2 44444444444444
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0082 Score=48.24 Aligned_cols=101 Identities=13% Similarity=0.095 Sum_probs=74.3
Q ss_pred HHHHHHHHH--HHHcCCHHHHHHHHHHHHhhcCCC-----------CHHHHHHHHHHHHHccCHHHHHHHHHHHHh----
Q 013299 318 SILYRLSLE--YAEQRKLNAAHYYAKMLLKLEGGS-----------NLKGWLLMARILSAQKRYEDAETILNAALD---- 380 (446)
Q Consensus 318 ~a~~~lg~~--~~~~~~~~~A~~~~~~al~l~P~~-----------~~~~~~~la~~~~~~g~~~eA~~~~~~al~---- 380 (446)
.+++.|+.. ..+-|-+++|...|++|....-.- ++-++-.|+..+..+|+|++++...+++|.
T Consensus 8 ~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNR 87 (144)
T PF12968_consen 8 MAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNR 87 (144)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhh
Confidence 344444333 345688999999999998875321 135677888999999999999998888884
Q ss_pred ---hcCCCCcHHHH----HHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Q 013299 381 ---QTGKWEQGELL----RTKAKVQLVQGQLKGAVETYTHLLAALQV 420 (446)
Q Consensus 381 ---~~p~~~~~~~~----~~~a~~~~~~g~~~eA~~~~~~~l~l~~~ 420 (446)
++. |....| +.+|..+...|+.++|+..|+.+-+...+
T Consensus 88 RGEL~q--deGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaE 132 (144)
T PF12968_consen 88 RGELHQ--DEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAE 132 (144)
T ss_dssp H--TTS--THHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred cccccc--ccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Confidence 444 555544 68999999999999999999999988754
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.003 Score=59.02 Aligned_cols=117 Identities=17% Similarity=0.024 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHH-HH--HHHHHccCHHHH
Q 013299 295 ATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLL-MA--RILSAQKRYEDA 371 (446)
Q Consensus 295 ~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~-la--~~~~~~g~~~eA 371 (446)
.+++.+|...|..++ ...|++.++...++.++...|+.++|...+...=.-..+ ..+.. .+ ..+.......+
T Consensus 147 ~e~~~~a~~~~~~al-~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~---~~~~~l~a~i~ll~qaa~~~~- 221 (304)
T COG3118 147 AEDFGEAAPLLKQAL-QAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQD---KAAHGLQAQIELLEQAAATPE- 221 (304)
T ss_pred ccchhhHHHHHHHHH-HhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchh---hHHHHHHHHHHHHHHHhcCCC-
Confidence 367889999999999 999999999999999999999999999888664222222 22222 12 22222222222
Q ss_pred HHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 013299 372 ETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAAL 418 (446)
Q Consensus 372 ~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~ 418 (446)
...+++.+..+| ++..+.+.+|..+...|+.++|++.+-..+..+
T Consensus 222 ~~~l~~~~aadP--dd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 222 IQDLQRRLAADP--DDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred HHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 234566677899 899999999999999999999998877666653
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00069 Score=63.86 Aligned_cols=100 Identities=14% Similarity=0.141 Sum_probs=79.1
Q ss_pred hchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHH
Q 013299 278 GISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLS----ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLK 353 (446)
Q Consensus 278 g~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~----a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~ 353 (446)
+.-|...|++ +.+.++|..|+.+|.+.+ ...-.|++ .+.|.+.+....|+|-.|+..+.+|+.++|++ ..
T Consensus 81 Aen~KeeGN~----~fK~Kryk~A~~~Yt~Gl-k~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h-~K 154 (390)
T KOG0551|consen 81 AENYKEEGNE----YFKEKRYKDAVESYTEGL-KKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTH-LK 154 (390)
T ss_pred HHHHHHHhHH----HHHhhhHHHHHHHHHHHH-hhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcch-hh
Confidence 3344555543 356678889999999988 77666554 45688888888899999999999999999998 58
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013299 354 GWLLMARILSAQKRYEDAETILNAALDQTG 383 (446)
Q Consensus 354 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p 383 (446)
+++.=|.++..++++++|+.+++..+..+-
T Consensus 155 a~~R~Akc~~eLe~~~~a~nw~ee~~~~d~ 184 (390)
T KOG0551|consen 155 AYIRGAKCLLELERFAEAVNWCEEGLQIDD 184 (390)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 888888889999999999999988887765
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.011 Score=53.60 Aligned_cols=61 Identities=15% Similarity=0.134 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcH------HHHHHHHHHHHHCCChHHHHHHHHHHh
Q 013299 162 SILDHLSFAFSIAGDLSSLATQIEELLPGIINRK------ERYHILALCYYGAGEDLVALNLLRTLL 222 (446)
Q Consensus 162 ~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~------~~~~~lg~~~~~~g~~~eA~~~~~~al 222 (446)
+.|..-+.++...++|++|-.++.+|++-.-+|. .++-.-|.++..+..+.|+...|+++.
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs 98 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKAS 98 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4555667777778888888888888875433332 234445556666666667777776666
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00025 Score=43.99 Aligned_cols=32 Identities=22% Similarity=0.271 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 013299 318 SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG 349 (446)
Q Consensus 318 ~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~ 349 (446)
.+|+.+|.++..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 45666666666666666666666666666663
|
... |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0018 Score=66.41 Aligned_cols=119 Identities=19% Similarity=0.097 Sum_probs=95.5
Q ss_pred CCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcH----HHHHHHHHHHHHCCC
Q 013299 135 RNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRK----ERYHILALCYYGAGE 210 (446)
Q Consensus 135 ~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~ 210 (446)
....+.+..++ +....+.|+.+-.....|.++...|+.++|++.|++++.....-+ -.++.+|.++.-+++
T Consensus 246 ~~~~~~a~~lL-----~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~ 320 (468)
T PF10300_consen 246 DVPLEEAEELL-----EEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHD 320 (468)
T ss_pred CCCHHHHHHHH-----HHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHch
Confidence 34566676665 456788899999999999999999999999999999996443333 246779999999999
Q ss_pred hHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCH-------HHHHHHHHHHHH
Q 013299 211 DLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLA-------EEGATFASRALE 260 (446)
Q Consensus 211 ~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~-------~eA~~~~~~al~ 260 (446)
|++|...+.+.+ +.+.-....|.+..++|+...++. ++|..+++++-.
T Consensus 321 w~~A~~~f~~L~--~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 321 WEEAAEYFLRLL--KESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHHHH--hccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 999999999999 666666666777788888888888 677777766654
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0001 Score=69.70 Aligned_cols=115 Identities=17% Similarity=0.110 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHH
Q 013299 296 TRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETIL 375 (446)
Q Consensus 296 ~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~ 375 (446)
|.+++|++.|.+++ +++|..+..+...+.++.+.++...|+..|..|+.++|+. +..+-..|.....+|++.+|-..+
T Consensus 128 G~~~~ai~~~t~ai-~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Ds-a~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 128 GEFDTAIELFTSAI-ELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDS-AKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cchhhhhccccccc-ccCCchhhhcccccceeeeccCCchhhhhhhhhhccCccc-ccccchhhHHHHHhhchHHHHHHH
Confidence 56899999999999 9999999999999999999999999999999999999998 488888999999999999999999
Q ss_pred HHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 013299 376 NAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLL 415 (446)
Q Consensus 376 ~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l 415 (446)
..+.+++=+ .....| +-.+.-..+..++-...|.+..
T Consensus 206 ~~a~kld~d-E~~~a~--lKeV~p~a~ki~e~~~k~er~~ 242 (377)
T KOG1308|consen 206 ALACKLDYD-EANSAT--LKEVFPNAGKIEEHRRKYERAR 242 (377)
T ss_pred HHHHhcccc-HHHHHH--HHHhccchhhhhhchhHHHHHH
Confidence 999988652 122222 2233334444444444444443
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.002 Score=49.98 Aligned_cols=49 Identities=20% Similarity=0.154 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Q 013299 301 ALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS 350 (446)
Q Consensus 301 Al~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~ 350 (446)
.+..+++.+ +.+|+|+++.+.+|..+...|++++|+..+-.++..+|++
T Consensus 7 ~~~al~~~~-a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 7 DIAALEAAL-AANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHH-HHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred cHHHHHHHH-HcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 344555555 5556655555555555555555555555555555555543
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.017 Score=52.15 Aligned_cols=73 Identities=15% Similarity=0.029 Sum_probs=40.0
Q ss_pred cCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcC--CCCC-CChHHHHHHHHHHhcCCCCHHH
Q 013299 174 AGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSG--SEDP-KCLPALLIASKICGEYPDLAEE 250 (446)
Q Consensus 174 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~~~P-~~~~a~~~~~~~~~~~~~~~~e 250 (446)
.+.+++|.+.|.++ |.+|.-...+..|-..|.++-+- +.+. ++....+.-+.-|+++ .+..+
T Consensus 27 ~~k~eeAadl~~~A--------------an~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk-~~~~e 91 (288)
T KOG1586|consen 27 SNKYEEAAELYERA--------------ANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKK-VDPEE 91 (288)
T ss_pred CcchHHHHHHHHHH--------------HHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhc-cChHH
Confidence 34667776666543 66666667777777777666510 1111 1122222234445553 46667
Q ss_pred HHHHHHHHHHH
Q 013299 251 GATFASRALEC 261 (446)
Q Consensus 251 A~~~~~~al~~ 261 (446)
|+.+++++|++
T Consensus 92 Av~cL~~aieI 102 (288)
T KOG1586|consen 92 AVNCLEKAIEI 102 (288)
T ss_pred HHHHHHHHHHH
Confidence 77777777764
|
|
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.012 Score=53.92 Aligned_cols=118 Identities=13% Similarity=0.045 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHH-HHHHHHH
Q 013299 299 AKALQALVSAARSTNMRDLSILYRLSLEYAEQR-KLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYE-DAETILN 376 (446)
Q Consensus 299 ~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~-~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~-eA~~~~~ 376 (446)
..|+..-+.++ .++|-|..+|...-.++..++ ++.+=+.++.+.+.-+|++ -.+|...-.+....|++. .-+...+
T Consensus 60 ~RAl~LT~d~i-~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKN-YQvWHHRr~ive~l~d~s~rELef~~ 137 (318)
T KOG0530|consen 60 PRALQLTEDAI-RLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKN-YQVWHHRRVIVELLGDPSFRELEFTK 137 (318)
T ss_pred HHHHHHHHHHH-HhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccc-hhHHHHHHHHHHHhcCcccchHHHHH
Confidence 45667777777 777777777777666666544 6777777777777777777 477777777777777766 6677777
Q ss_pred HHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Q 013299 377 AALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQV 420 (446)
Q Consensus 377 ~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~ 420 (446)
.++..+. .|..+|.++-.+....+.++.-+....++|+.+.-
T Consensus 138 ~~l~~Da--KNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~ 179 (318)
T KOG0530|consen 138 LMLDDDA--KNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIR 179 (318)
T ss_pred HHHhccc--cchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhh
Confidence 7777766 57777777777777777777777777777776543
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0013 Score=61.98 Aligned_cols=102 Identities=19% Similarity=0.003 Sum_probs=90.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHH
Q 013299 320 LYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS---NLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAK 396 (446)
Q Consensus 320 ~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~---~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~ 396 (446)
+--=|.-|+..++|..|+..|.+.|+.+-.+ .+..|.|.|.+....|+|..|+.-+.+|+..+| .+..+++.-|.
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P--~h~Ka~~R~Ak 161 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKP--THLKAYIRGAK 161 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCc--chhhhhhhhhH
Confidence 3345999999999999999999999975443 246788999999999999999999999999999 99999999999
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHhhhhh
Q 013299 397 VQLVQGQLKGAVETYTHLLAALQVQTK 423 (446)
Q Consensus 397 ~~~~~g~~~eA~~~~~~~l~l~~~~~~ 423 (446)
++.++.++++|+..++..+.+..+...
T Consensus 162 c~~eLe~~~~a~nw~ee~~~~d~e~K~ 188 (390)
T KOG0551|consen 162 CLLELERFAEAVNWCEEGLQIDDEAKK 188 (390)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHH
Confidence 999999999999999999888766443
|
|
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.006 Score=55.89 Aligned_cols=174 Identities=10% Similarity=0.048 Sum_probs=105.9
Q ss_pred HHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCC-ChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCH
Q 013299 170 AFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAG-EDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLA 248 (446)
Q Consensus 170 ~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~ 248 (446)
++.+....+.|++..+.+|.++|.+-..|...-.++..++ +..+-+..+.+.+ .-+|+|..++...-.+
T Consensus 52 I~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~--e~npKNYQvWHHRr~i-------- 121 (318)
T KOG0530|consen 52 IIAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEII--EDNPKNYQVWHHRRVI-------- 121 (318)
T ss_pred HHhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHH--HhCccchhHHHHHHHH--------
Confidence 3444455667777777777777777777766666666654 3344456666666 6677766655432111
Q ss_pred HHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHH-HHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 013299 249 EEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQA-KALQALVSAARSTNMRDLSILYRLSLEY 327 (446)
Q Consensus 249 ~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~-eAl~~~~~al~~~~P~~~~a~~~lg~~~ 327 (446)
++..+ + .. .-++..+.++ ..+..|..+|.+.-.+.
T Consensus 122 ----------ve~l~-d--------------------------------~s~rELef~~~~l-~~DaKNYHaWshRqW~~ 157 (318)
T KOG0530|consen 122 ----------VELLG-D--------------------------------PSFRELEFTKLML-DDDAKNYHAWSHRQWVL 157 (318)
T ss_pred ----------HHHhc-C--------------------------------cccchHHHHHHHH-hccccchhhhHHHHHHH
Confidence 11111 1 11 2345666777 77777888888888777
Q ss_pred HHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcc------CHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHH
Q 013299 328 AEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQK------RYEDAETILNAALDQTGKWEQGELLRTKAKVQLV 400 (446)
Q Consensus 328 ~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g------~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~ 400 (446)
..-+.++.=+.+..+.++.|--+. .+|...=.+..... ..+.-+.+..+.+...| +|-.+|..+..++..
T Consensus 158 r~F~~~~~EL~y~~~Lle~Di~NN-SAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP--~NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 158 RFFKDYEDELAYADELLEEDIRNN-SAWNQRYFVITNTKGVISKAELERELNYTKDKILLVP--NNESAWNYLKGLLEL 233 (318)
T ss_pred HHHhhHHHHHHHHHHHHHHhhhcc-chhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCC--CCccHHHHHHHHHHh
Confidence 777778888888888877777664 67765432222211 22334556667777777 677777666655554
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.027 Score=55.31 Aligned_cols=120 Identities=16% Similarity=0.090 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccC
Q 013299 297 RQAKALQALVSAARSTNMRDLSILYRLSLEYAEQ---------RKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKR 367 (446)
Q Consensus 297 ~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~---------~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~ 367 (446)
+.++|+..+..++....+.+++++.-+|.+|.+. ..+++|+..|+++.+++|+. -.=.|++.++...|.
T Consensus 197 dre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~--Y~GIN~AtLL~~~g~ 274 (374)
T PF13281_consen 197 DREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY--YSGINAATLLMLAGH 274 (374)
T ss_pred CHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc--cchHHHHHHHHHcCC
Confidence 3444444444422133344444444444444321 23899999999999999875 344556777777776
Q ss_pred HHHHHHHHHHHH--------hh---cCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Q 013299 368 YEDAETILNAAL--------DQ---TGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQ 419 (446)
Q Consensus 368 ~~eA~~~~~~al--------~~---~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~ 419 (446)
-.+...-+++.. +. .+. .+.-.+-.++.+..-.|+++.|.+++++++.+.|
T Consensus 275 ~~~~~~el~~i~~~l~~llg~kg~~~~~-~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~ 336 (374)
T PF13281_consen 275 DFETSEELRKIGVKLSSLLGRKGSLEKM-QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKP 336 (374)
T ss_pred cccchHHHHHHHHHHHHHHHhhcccccc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Confidence 443332222221 11 121 2334445677778889999999999999998864
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.15 Score=49.92 Aligned_cols=154 Identities=14% Similarity=0.019 Sum_probs=95.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCC----CcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCC-C--
Q 013299 158 EWDPSILDHLSFAFSIAGDLSSLATQIEELLPGII----NRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPK-C-- 230 (446)
Q Consensus 158 p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p----~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~-~-- 230 (446)
......|...+.+..+.|+++.|...+.++...++ ..+...+..+.+++..|+..+|+..++..+ ...+. .
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~--~~~~~~~~~ 220 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELL--KCRLSKNID 220 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHH--HHHhhhccc
Confidence 45667888999999999999999999999888652 256778888999999999999999999888 41111 1
Q ss_pred hH--HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHH
Q 013299 231 LP--ALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSA 308 (446)
Q Consensus 231 ~~--a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~a 308 (446)
+. .... .+............. ........+.++..+|....... .. ...+..++++..|+++
T Consensus 221 ~~~~~~~~-~~~~~~~~~~~~~~~----------~~~~~~~~a~~~l~~a~w~~~~~----~~-~~~~~~~~~~~~~~~a 284 (352)
T PF02259_consen 221 SISNAELK-SGLLESLEVISSTNL----------DKESKELKAKAFLLLAKWLDELY----SK-LSSESSDEILKYYKEA 284 (352)
T ss_pred cccHHHHh-hccccccccccccch----------hhhhHHHHHHHHHHHHHHHHhhc----cc-cccccHHHHHHHHHHH
Confidence 00 0010 000000000000000 00111123455666665443320 00 0125678999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHc
Q 013299 309 ARSTNMRDLSILYRLSLEYAEQ 330 (446)
Q Consensus 309 l~~~~P~~~~a~~~lg~~~~~~ 330 (446)
+ +.+|+...+|+.+|..+...
T Consensus 285 ~-~~~~~~~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 285 T-KLDPSWEKAWHSWALFNDKL 305 (352)
T ss_pred H-HhChhHHHHHHHHHHHHHHH
Confidence 9 99999999999999875543
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.052 Score=57.03 Aligned_cols=232 Identities=14% Similarity=-0.002 Sum_probs=145.3
Q ss_pred CCCHHHHHHHHHHHHhc-----CCHHHHHHHHHhhCC-----CCCCcHHHHHHHHHHHHHCC-----ChHHHHHHHHHHh
Q 013299 158 EWDPSILDHLSFAFSIA-----GDLSSLATQIEELLP-----GIINRKERYHILALCYYGAG-----EDLVALNLLRTLL 222 (446)
Q Consensus 158 p~~~~~~~~lg~~l~~~-----~~~~~A~~~~~~al~-----~~p~~~~~~~~lg~~~~~~g-----~~~eA~~~~~~al 222 (446)
-.+..+...+|.++..- .+.+.|+.+|+.+.. ..-.++.+.+.+|.+|.+.. +++.|...|.++-
T Consensus 241 ~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA 320 (552)
T KOG1550|consen 241 LGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAA 320 (552)
T ss_pred hcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHH
Confidence 35677778888888754 589999999999866 11226678899999999854 6778999999988
Q ss_pred cCCCCCCChHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHH
Q 013299 223 SGSEDPKCLPALLIASKICGEYP--DLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAK 300 (446)
Q Consensus 223 ~~~~~P~~~~a~~~~~~~~~~~~--~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~e 300 (446)
.. +++.+.+.+|.++.... .+...|..+|..|... .+ ..+.+.++.||..- .- .......
T Consensus 321 --~~--g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~-----~~A~~~la~~y~~G-~g------v~r~~~~ 382 (552)
T KOG1550|consen 321 --EL--GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GH-----ILAIYRLALCYELG-LG------VERNLEL 382 (552)
T ss_pred --hc--CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CC-----hHHHHHHHHHHHhC-CC------cCCCHHH
Confidence 33 34445666665544433 3567999999999873 22 46888888887542 10 1225689
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHc----------cCHH
Q 013299 301 ALQALVSAARSTNMRDLSILYRLSLEYAEQ-RKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQ----------KRYE 369 (446)
Q Consensus 301 Al~~~~~al~~~~P~~~~a~~~lg~~~~~~-~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~----------g~~~ 369 (446)
|..+|+++. +.+ ++.+.+.++..+.-. ++++.+...+...-++.-+. +..+-+.+.... .+..
T Consensus 383 A~~~~k~aA-~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~---~q~~a~~l~~~~~~~~~~~~~~~~~~ 456 (552)
T KOG1550|consen 383 AFAYYKKAA-EKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEV---AQSNAAYLLDQSEEDLFSRGVISTLE 456 (552)
T ss_pred HHHHHHHHH-Hcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhH---HhhHHHHHHHhccccccccccccchh
Confidence 999999999 877 777777777766543 67777666555544433211 111111111111 1344
Q ss_pred HHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHh----CCHHHHHHHHHHHHHH
Q 013299 370 DAETILNAALDQTGKWEQGELLRTKAKVQLVQ----GQLKGAVETYTHLLAA 417 (446)
Q Consensus 370 eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~----g~~~eA~~~~~~~l~l 417 (446)
-+...+.++-.. .+..+...+|.++..- .+++.|...|.++..-
T Consensus 457 ~~~~~~~~a~~~----g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~ 504 (552)
T KOG1550|consen 457 RAFSLYSRAAAQ----GNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQ 504 (552)
T ss_pred HHHHHHHHHHhc----cCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHh
Confidence 444445444322 3445555566555432 2366666666666554
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00077 Score=41.72 Aligned_cols=31 Identities=19% Similarity=0.341 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013299 353 KGWLLMARILSAQKRYEDAETILNAALDQTG 383 (446)
Q Consensus 353 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 383 (446)
.+|..+|.++..+|++++|+.+|+++++.+|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4556666666666666666666666666655
|
... |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.071 Score=48.61 Aligned_cols=50 Identities=16% Similarity=0.157 Sum_probs=25.0
Q ss_pred HHcCCHHHHHHHHHHHHhhcCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHH
Q 013299 328 AEQRKLNAAHYYAKMLLKLEGGSN-----LKGWLLMARILSAQKRYEDAETILNA 377 (446)
Q Consensus 328 ~~~~~~~~A~~~~~~al~l~P~~~-----~~~~~~la~~~~~~g~~~eA~~~~~~ 377 (446)
.+..+.++|++.|++++.+-..+. .+.+-..+.++.+.++|+||-..+.+
T Consensus 121 lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lK 175 (308)
T KOG1585|consen 121 LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLK 175 (308)
T ss_pred hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHH
Confidence 344556666666666655433221 12233345555566666666555544
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.21 Score=53.47 Aligned_cols=266 Identities=17% Similarity=0.073 Sum_probs=156.6
Q ss_pred ccccCCCcHHHHHHHHHHHHHHHHhhcCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHhhCCCCC-----CcHHHHHHHHH
Q 013299 130 SSFVPRNNIEEAILLLMILLRKVALKRIEWDP-SILDHLSFAFSIAGDLSSLATQIEELLPGII-----NRKERYHILAL 203 (446)
Q Consensus 130 ~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~-~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~lg~ 203 (446)
..+...|...+||.- +....+|.-. +.....|.-+...++..-- ...++.-| .+|......+.
T Consensus 355 ~w~~~~g~~~eAI~h-------AlaA~d~~~aa~lle~~~~~L~~~~~lsll----~~~~~~lP~~~l~~~P~Lvll~aW 423 (894)
T COG2909 355 EWFAEHGLPSEAIDH-------ALAAGDPEMAADLLEQLEWQLFNGSELSLL----LAWLKALPAELLASTPRLVLLQAW 423 (894)
T ss_pred HHHHhCCChHHHHHH-------HHhCCCHHHHHHHHHhhhhhhhcccchHHH----HHHHHhCCHHHHhhCchHHHHHHH
Confidence 356677788888763 2233333211 2222333333333333222 22222222 24455566677
Q ss_pred HHHHCCChHHHHHHHHHHhcCCCCCCChH------HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHh
Q 013299 204 CYYGAGEDLVALNLLRTLLSGSEDPKCLP------ALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLL 277 (446)
Q Consensus 204 ~~~~~g~~~eA~~~~~~al~~~~~P~~~~------a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~l 277 (446)
......++.+|..++.++...-..|++.. .+..+.++.....|++++|++..+.++...|++.......+...+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 88889999999999888773112332211 111222233334689999999999999988776443344455555
Q ss_pred hchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhh----CCCCHHHH--HHHHHHHHHcC--CHHHHHHHHHHH----Hh
Q 013299 278 GISLSAQSKVAITDFDRATRQAKALQALVSAARST----NMRDLSIL--YRLSLEYAEQR--KLNAAHYYAKML----LK 345 (446)
Q Consensus 278 g~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~----~P~~~~a~--~~lg~~~~~~~--~~~~A~~~~~~a----l~ 345 (446)
|.+..- .|++++|+.+.+.+. +. +--...+| +..+.++..+| .+++.+..+... +.
T Consensus 504 ~~a~~~-----------~G~~~~Al~~~~~a~-~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~ 571 (894)
T COG2909 504 GEAAHI-----------RGELTQALALMQQAE-QMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLE 571 (894)
T ss_pred hHHHHH-----------hchHHHHHHHHHHHH-HHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Confidence 555433 467899999988888 66 33333444 34477888888 344444444443 22
Q ss_pred hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh----cCCCCcH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Q 013299 346 LEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQ----TGKWEQG-ELLRTKAKVQLVQGQLKGAVETYTHLLAALQ 419 (446)
Q Consensus 346 l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~----~p~~~~~-~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~ 419 (446)
..|-+. ......+.++...-+++.+.....+.++. .|.+-.. -+...++.+....|+.++|.........+..
T Consensus 572 q~~~~~-f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~ 649 (894)
T COG2909 572 QKPRHE-FLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLL 649 (894)
T ss_pred hcccch-hHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 344442 44555566666666677777766666644 2310122 2234789999999999999999998888764
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0079 Score=46.68 Aligned_cols=80 Identities=19% Similarity=0.149 Sum_probs=66.9
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 013299 336 AHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLL 415 (446)
Q Consensus 336 A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l 415 (446)
.+..++++++.+|++ ..+.+.+|..+...|++++|++.+-.+++.+|.|++..+.-.+-.++...|.-+.-...|++-|
T Consensus 7 ~~~al~~~~a~~P~D-~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 7 DIAALEAALAANPDD-LDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp HHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred cHHHHHHHHHcCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 456789999999999 6999999999999999999999999999999977778888888899999999888888887765
Q ss_pred H
Q 013299 416 A 416 (446)
Q Consensus 416 ~ 416 (446)
.
T Consensus 86 ~ 86 (90)
T PF14561_consen 86 A 86 (90)
T ss_dssp H
T ss_pred H
Confidence 4
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.018 Score=49.04 Aligned_cols=61 Identities=23% Similarity=0.197 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 013299 318 SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAAL 379 (446)
Q Consensus 318 ~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al 379 (446)
.++..++..+...|++++|+..+++++.++|-+ ..+|..+-.++..+|++.+|+..|++..
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~-E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYD-EEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 556678888899999999999999999999999 5999999999999999999999998775
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.047 Score=52.30 Aligned_cols=188 Identities=15% Similarity=-0.014 Sum_probs=127.8
Q ss_pred CCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH--
Q 013299 134 PRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIA----GDLSSLATQIEELLPGIINRKERYHILALCYYG-- 207 (446)
Q Consensus 134 ~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~----~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-- 207 (446)
....+..++..+... . . -.++.+...++..+... .+..+|...|+.+. +.+++.+.++||.+|..
T Consensus 53 ~~~~~~~a~~~~~~a----~-~--~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~ 123 (292)
T COG0790 53 YPPDYAKALKSYEKA----A-E--LGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGR 123 (292)
T ss_pred ccccHHHHHHHHHHh----h-h--cCChHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCC
Confidence 445677776654211 1 1 23446777888887754 36889999999555 45789999999999998
Q ss_pred --CCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcC---C-C--CHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhc
Q 013299 208 --AGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEY---P-D--LAEEGATFASRALECLGDGCDQMESTANCLLGI 279 (446)
Q Consensus 208 --~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~---~-~--~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~ 279 (446)
..++.+|...|+++.+ .-++.-..+.+.++..+..- . - ....|..+|.++-... ...+.+.+|.
T Consensus 124 gv~~d~~~A~~~~~~Aa~-~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~-------~~~a~~~lg~ 195 (292)
T COG0790 124 GVPLDLVKALKYYEKAAK-LGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG-------NPDAQLLLGR 195 (292)
T ss_pred CcccCHHHHHHHHHHHHH-cCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc-------CHHHHHHHHH
Confidence 4589999999999993 11332112255555554332 0 1 2337888898888743 2568888998
Q ss_pred hhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---------------CHHHHHHHHHHHH
Q 013299 280 SLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQR---------------KLNAAHYYAKMLL 344 (446)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~---------------~~~~A~~~~~~al 344 (446)
+|..- .-. ..+.++|+..|.++. +... ..+++.++ ++...| +...|...+.++.
T Consensus 196 ~y~~G-~Gv------~~d~~~A~~wy~~Aa-~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~ 264 (292)
T COG0790 196 MYEKG-LGV------PRDLKKAFRWYKKAA-EQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKAC 264 (292)
T ss_pred HHHcC-CCC------CcCHHHHHHHHHHHH-HCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHH
Confidence 87543 100 135789999999999 7777 99999999 666666 6677777777776
Q ss_pred hhcCC
Q 013299 345 KLEGG 349 (446)
Q Consensus 345 ~l~P~ 349 (446)
...+.
T Consensus 265 ~~~~~ 269 (292)
T COG0790 265 ELGFD 269 (292)
T ss_pred HcCCh
Confidence 65554
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.11 Score=52.51 Aligned_cols=219 Identities=12% Similarity=0.048 Sum_probs=149.2
Q ss_pred HHHhhCCCCCCcHHHHHHHHHHHHHCCC--------------hHHHHHHHHHHhcCCCCCCChHHHHHHHHHH--hcCCC
Q 013299 183 QIEELLPGIINRKERYHILALCYYGAGE--------------DLVALNLLRTLLSGSEDPKCLPALLIASKIC--GEYPD 246 (446)
Q Consensus 183 ~~~~al~~~p~~~~~~~~lg~~~~~~g~--------------~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~--~~~~~ 246 (446)
.|++++..-+-.++.|+..+.-+...++ .+++..+|++++. .+.-.+...++.++..- ..+.+
T Consensus 267 ayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~-~l~~~~~~Ly~~~a~~eE~~~~~n 345 (656)
T KOG1914|consen 267 AYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIE-GLLKENKLLYFALADYEESRYDDN 345 (656)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhHHHhcccc
Confidence 4677777777888889888777777776 7899999999994 33333443333322210 01122
Q ss_pred CHHHHHHHHHHHHHHcCCCcchhhhHHHHHhh-chhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 013299 247 LAEEGATFASRALECLGDGCDQMESTANCLLG-ISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSL 325 (446)
Q Consensus 247 ~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg-~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~ 325 (446)
+.+.-..++++++.....+. ..+|..+= .+. |..-..-|...|.+|- +..-.-.+++..-|.
T Consensus 346 ~~~~~~~~~~~ll~~~~~~~----tLv~~~~mn~ir------------R~eGlkaaR~iF~kaR-~~~r~~hhVfVa~A~ 408 (656)
T KOG1914|consen 346 KEKKVHEIYNKLLKIEDIDL----TLVYCQYMNFIR------------RAEGLKAARKIFKKAR-EDKRTRHHVFVAAAL 408 (656)
T ss_pred hhhhhHHHHHHHHhhhccCC----ceehhHHHHHHH------------HhhhHHHHHHHHHHHh-hccCCcchhhHHHHH
Confidence 45666778888887543332 22222221 111 2233567788888887 543333355555554
Q ss_pred H-HHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh--cCCCCcHHHHHHHHHHHHHhC
Q 013299 326 E-YAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQ--TGKWEQGELLRTKAKVQLVQG 402 (446)
Q Consensus 326 ~-~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~p~~~~~~~~~~~a~~~~~~g 402 (446)
+ |.-+++.+-|...|+-.+.-.|+.+ ..-+.....+...++-..|...|++++.. .|+ ....+|-..-.-...-|
T Consensus 409 mEy~cskD~~~AfrIFeLGLkkf~d~p-~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~-ks~~Iw~r~l~yES~vG 486 (656)
T KOG1914|consen 409 MEYYCSKDKETAFRIFELGLKKFGDSP-EYVLKYLDFLSHLNDDNNARALFERVLTSVLSAD-KSKEIWDRMLEYESNVG 486 (656)
T ss_pred HHHHhcCChhHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHhCcchhHHHHHHHHHhccCChh-hhHHHHHHHHHHHHhcc
Confidence 4 3458999999999999999999986 77777888899999999999999999976 552 34677877777788889
Q ss_pred CHHHHHHHHHHHHHHHhhh
Q 013299 403 QLKGAVETYTHLLAALQVQ 421 (446)
Q Consensus 403 ~~~eA~~~~~~~l~l~~~~ 421 (446)
+....++.=++-....|..
T Consensus 487 dL~si~~lekR~~~af~~~ 505 (656)
T KOG1914|consen 487 DLNSILKLEKRRFTAFPAD 505 (656)
T ss_pred cHHHHHHHHHHHHHhcchh
Confidence 9988888877777776643
|
|
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0032 Score=58.85 Aligned_cols=65 Identities=15% Similarity=0.119 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHH
Q 013299 294 RATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMAR 360 (446)
Q Consensus 294 ~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~ 360 (446)
+.|+.++|...|+-|+ .++|++++++...|......+++-+|-.+|-+|+.++|.+ .+++.+.+.
T Consensus 128 ~~Gk~ekA~~lfeHAl-alaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~n-seALvnR~R 192 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHAL-ALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGN-SEALVNRAR 192 (472)
T ss_pred hccchHHHHHHHHHHH-hcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCc-hHHHhhhhc
Confidence 3477899999999999 9999999999999999998999999999999999999999 588887654
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0019 Score=39.42 Aligned_cols=31 Identities=29% Similarity=0.312 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 013299 319 ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG 349 (446)
Q Consensus 319 a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~ 349 (446)
+++++|.++...|++++|+..|++.+...|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3444444444444444444444444444443
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.073 Score=55.91 Aligned_cols=182 Identities=19% Similarity=0.197 Sum_probs=131.4
Q ss_pred HHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHC-----CChHHHHHHHHHHhcC---CCCCCChHHHHHHHHHHhcC---C
Q 013299 177 LSSLATQIEELLPGIINRKERYHILALCYYGA-----GEDLVALNLLRTLLSG---SEDPKCLPALLIASKICGEY---P 245 (446)
Q Consensus 177 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-----g~~~eA~~~~~~al~~---~~~P~~~~a~~~~~~~~~~~---~ 245 (446)
...|...|+.+.+. ++..+.+.+|.++..- .+.+.|+..|+.+.+. ...-.++.+.+.+|.+++.. .
T Consensus 228 ~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~ 305 (552)
T KOG1550|consen 228 LSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVE 305 (552)
T ss_pred hhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCc
Confidence 56788999988876 5888999999999875 5889999999998720 00111344556667666653 1
Q ss_pred C-CHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 013299 246 D-LAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLS 324 (446)
Q Consensus 246 ~-~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg 324 (446)
. +.+.|+.+|.++-+... +.+.+.+|.++.... ...+...|.++|..|. .-.+..+.+++|
T Consensus 306 ~~d~~~A~~~~~~aA~~g~-------~~a~~~lg~~~~~g~--------~~~d~~~A~~yy~~Aa---~~G~~~A~~~la 367 (552)
T KOG1550|consen 306 KIDYEKALKLYTKAAELGN-------PDAQYLLGVLYETGT--------KERDYRRAFEYYSLAA---KAGHILAIYRLA 367 (552)
T ss_pred cccHHHHHHHHHHHHhcCC-------chHHHHHHHHHHcCC--------ccccHHHHHHHHHHHH---HcCChHHHHHHH
Confidence 2 56789999999998533 358899999987642 0134679999999988 467889999999
Q ss_pred HHHHH----cCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHc-cCHHHHHHHHHHHHhh
Q 013299 325 LEYAE----QRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQ-KRYEDAETILNAALDQ 381 (446)
Q Consensus 325 ~~~~~----~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~-g~~~eA~~~~~~al~~ 381 (446)
.+|.. ..+.+.|..+|+++.+.+ ++ .+...++.++.-- +++..+...+...-+.
T Consensus 368 ~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~-~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~ 426 (552)
T KOG1550|consen 368 LCYELGLGVERNLELAFAYYKKAAEKG--NP-SAAYLLGAFYEYGVGRYDTALALYLYLAEL 426 (552)
T ss_pred HHHHhCCCcCCCHHHHHHHHHHHHHcc--Ch-hhHHHHHHHHHHccccccHHHHHHHHHHHh
Confidence 99875 358999999999999988 33 5555555554333 7777777666544433
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.00048 Score=65.23 Aligned_cols=86 Identities=9% Similarity=0.007 Sum_probs=81.2
Q ss_pred cCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHH
Q 013299 330 QRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVE 409 (446)
Q Consensus 330 ~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~ 409 (446)
.|.+++|+..|-+++.++|.. +..+-..+.++.++++...|+.-|+.|++++| |....+-.++.....+|..++|..
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~-a~l~~kr~sv~lkl~kp~~airD~d~A~ein~--Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPL-AILYAKRASVFLKLKKPNAAIRDCDFAIEINP--DSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred CcchhhhhcccccccccCCch-hhhcccccceeeeccCCchhhhhhhhhhccCc--ccccccchhhHHHHHhhchHHHHH
Confidence 678999999999999999998 59999999999999999999999999999999 888888889999999999999999
Q ss_pred HHHHHHHHH
Q 013299 410 TYTHLLAAL 418 (446)
Q Consensus 410 ~~~~~l~l~ 418 (446)
.++.+.++.
T Consensus 204 dl~~a~kld 212 (377)
T KOG1308|consen 204 DLALACKLD 212 (377)
T ss_pred HHHHHHhcc
Confidence 999998875
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.74 Score=46.77 Aligned_cols=69 Identities=9% Similarity=0.053 Sum_probs=63.6
Q ss_pred hhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhc
Q 013299 154 LKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLS 223 (446)
Q Consensus 154 l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~ 223 (446)
++.+|.|.++|+.|-.-+..+ -+++..+.|++.+..-|..+.+|-......+...+|+.-+.+|.+||.
T Consensus 13 ie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLv 81 (656)
T KOG1914|consen 13 IEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLV 81 (656)
T ss_pred HhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 577899999999887766655 899999999999999999999999999999999999999999999994
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0068 Score=60.09 Aligned_cols=129 Identities=12% Similarity=-0.004 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HhhcCC------CC-HHHHHHHHHHHHHccC
Q 013299 296 TRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKML-LKLEGG------SN-LKGWLLMARILSAQKR 367 (446)
Q Consensus 296 ~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~a-l~l~P~------~~-~~~~~~la~~~~~~g~ 367 (446)
....-+..-.+-++ .+.-+.+.+++-.+..++..|++..|.+.+... +.-.|. -. -..|+++|.|++.+|.
T Consensus 220 ~~Lk~~krevK~vm-n~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~ 298 (696)
T KOG2471|consen 220 RNLKLAKREVKHVM-NIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGC 298 (696)
T ss_pred HHHHHHHHhhhhhh-hhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhh
Confidence 34566667777788 788899999999999999999999999988654 233333 20 1358899999999999
Q ss_pred HHHHHHHHHHHHh---------hcCC-------CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhc
Q 013299 368 YEDAETILNAALD---------QTGK-------WEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTF 425 (446)
Q Consensus 368 ~~eA~~~~~~al~---------~~p~-------~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~~ 425 (446)
|.-+..+|.+|++ +.|. +...++.|+.|..+...|++-.|.++|.+++..+..++.-|
T Consensus 299 y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlW 372 (696)
T KOG2471|consen 299 YQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLW 372 (696)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHH
Confidence 9999999999995 1221 13578899999999999999999999999998876555444
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.068 Score=52.08 Aligned_cols=110 Identities=8% Similarity=-0.158 Sum_probs=79.0
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHhcCC------------HHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHH
Q 013299 151 KVALKRIEWDPSILDHLSFAFSIAGD------------LSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLL 218 (446)
Q Consensus 151 ~~~l~~~p~~~~~~~~lg~~l~~~~~------------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~ 218 (446)
...++.+|.|.++|..+....-..-. .+.-+..|++|++.+|++...+..+-.+.......++.....
T Consensus 9 ~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~w 88 (321)
T PF08424_consen 9 NRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKW 88 (321)
T ss_pred HHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 34467889999999877655443322 355678899999999999999888888888888888888899
Q ss_pred HHHhcCCCCCCChHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHc
Q 013299 219 RTLLSGSEDPKCLPALLIASKICGEYP--DLAEEGATFASRALECL 262 (446)
Q Consensus 219 ~~al~~~~~P~~~~a~~~~~~~~~~~~--~~~~eA~~~~~~al~~~ 262 (446)
++++ ..+|+++..+........... -.+......|.++++.+
T Consensus 89 e~~l--~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L 132 (321)
T PF08424_consen 89 EELL--FKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRAL 132 (321)
T ss_pred HHHH--HHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHH
Confidence 9999 889999887765443333221 23556666666666643
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0035 Score=38.24 Aligned_cols=30 Identities=13% Similarity=0.173 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013299 354 GWLLMARILSAQKRYEDAETILNAALDQTG 383 (446)
Q Consensus 354 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p 383 (446)
+++.+|.++..+|++++|+..++++++..|
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 567777777777788888888888877777
|
|
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.024 Score=57.64 Aligned_cols=123 Identities=16% Similarity=0.048 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHH-H
Q 013299 299 AKALQALVSAARSTNMRDLSILYR--LSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETI-L 375 (446)
Q Consensus 299 ~eAl~~~~~al~~~~P~~~~a~~~--lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~-~ 375 (446)
.-++..+..-+ .++|.+++.+.. +...+...++-..+......++..+|++. .+..+||..+..-|....++.. .
T Consensus 48 ~~~~~a~~~~~-~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~L~~ale~~~~~~~~~~~~~ 125 (620)
T COG3914 48 ALAIYALLLGI-AINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENC-PAVQNLAAALELDGLQFLALADIS 125 (620)
T ss_pred hHHHHHHHccC-ccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccc-hHHHHHHHHHHHhhhHHHHHHHHH
Confidence 34666777777 788898887543 47777778888888999999999999985 9999999888777776655544 4
Q ss_pred HHHHhhcCCCCcHHHHHHH------HHHHHHhCCHHHHHHHHHHHHHHHhhhhhhc
Q 013299 376 NAALDQTGKWEQGELLRTK------AKVQLVQGQLKGAVETYTHLLAALQVQTKTF 425 (446)
Q Consensus 376 ~~al~~~p~~~~~~~~~~~------a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~~ 425 (446)
+.+....| ++......+ +..+..+|+..++.....++.++.|++....
T Consensus 126 ~~a~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~ 179 (620)
T COG3914 126 EIAEWLSP--DNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVL 179 (620)
T ss_pred HHHHhcCc--chHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhH
Confidence 55888888 777777777 8889999999999999999999998775443
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0038 Score=39.33 Aligned_cols=26 Identities=27% Similarity=0.254 Sum_probs=13.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 013299 320 LYRLSLEYAEQRKLNAAHYYAKMLLK 345 (446)
Q Consensus 320 ~~~lg~~~~~~~~~~~A~~~~~~al~ 345 (446)
+.+||.+|..+|++++|+.+|++++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45555555555555555555555443
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0045 Score=38.96 Aligned_cols=25 Identities=32% Similarity=0.323 Sum_probs=11.9
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHH
Q 013299 355 WLLMARILSAQKRYEDAETILNAAL 379 (446)
Q Consensus 355 ~~~la~~~~~~g~~~eA~~~~~~al 379 (446)
|.+||.++..+|+|++|+.+|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4445555555555555555555533
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.11 Score=45.82 Aligned_cols=85 Identities=22% Similarity=0.137 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHH
Q 013299 295 ATRQAKALQALVSAARSTNMRDLS----ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYED 370 (446)
Q Consensus 295 ~~~~~eAl~~~~~al~~~~P~~~~----a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~e 370 (446)
.+++++|+..++.++ -.|.|.. +-.+||.+..++|.+|+|+..+..... +...+..-...|.++..+|+-++
T Consensus 102 ~~~~d~A~aqL~~~l--~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~elrGDill~kg~k~~ 177 (207)
T COG2976 102 ANNLDKAEAQLKQAL--AQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAELRGDILLAKGDKQE 177 (207)
T ss_pred hccHHHHHHHHHHHH--ccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHHHhhhHHHHcCchHH
Confidence 356777777777777 3444433 335788888889999999887765422 22112345567899999999999
Q ss_pred HHHHHHHHHhhcC
Q 013299 371 AETILNAALDQTG 383 (446)
Q Consensus 371 A~~~~~~al~~~p 383 (446)
|...|++++...+
T Consensus 178 Ar~ay~kAl~~~~ 190 (207)
T COG2976 178 ARAAYEKALESDA 190 (207)
T ss_pred HHHHHHHHHHccC
Confidence 9999999988766
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=96.64 E-value=1.1 Score=47.02 Aligned_cols=76 Identities=18% Similarity=0.305 Sum_probs=38.3
Q ss_pred HHHHHHhhhhcccChHHHHHHHHHHHHHHHhhh-cC-CCCCCCCccccHH---HHHHHHHHHhHHHHHHhCChHHHHHHH
Q 013299 12 AIFLKAKCLQGLGRFKEAAQSCKVILDIVESSF-AE-GFPENLGADCKLQ---ETLNRAVELLPELWKLADAPRETIMSY 86 (446)
Q Consensus 12 ~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~-~~-~~~~~~~~~~~l~---~~~~~a~~~l~~~~~~~g~~~eA~~~y 86 (446)
.++..-.|+...|+..+|.-. ..++++.+... .- |+-..+. +.. ..+++-+...-.+++.+...++|+.+|
T Consensus 492 nl~iaercfaai~dvak~r~l-hd~~eiadeas~~~ggdgt~fy---kvra~lail~kkfk~ae~ifleqn~te~aigmy 567 (1636)
T KOG3616|consen 492 NLFIAERCFAAIGDVAKARFL-HDILEIADEASIEIGGDGTDFY---KVRAMLAILEKKFKEAEMIFLEQNATEEAIGMY 567 (1636)
T ss_pred cchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHhhCCCCchHH---HHHHHHHHHHhhhhHHHHHHHhcccHHHHHHHH
Confidence 345556677777776665432 33344432221 00 1111110 111 122333333346788899999999998
Q ss_pred HHHhC
Q 013299 87 RRALL 91 (446)
Q Consensus 87 ~~al~ 91 (446)
+..-+
T Consensus 568 ~~lhk 572 (1636)
T KOG3616|consen 568 QELHK 572 (1636)
T ss_pred HHHHh
Confidence 87544
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.012 Score=40.58 Aligned_cols=38 Identities=24% Similarity=0.332 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHH
Q 013299 319 ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLL 357 (446)
Q Consensus 319 a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~ 357 (446)
.+|.+|..+++.|+|++|..+++.+++++|++. .+...
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~-Qa~~L 40 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNR-QAQSL 40 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-H-HHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcH-HHHHH
Confidence 455556666666666666666666666666652 44443
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.03 Score=44.73 Aligned_cols=107 Identities=16% Similarity=0.160 Sum_probs=73.7
Q ss_pred HHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhch
Q 013299 201 LALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGIS 280 (446)
Q Consensus 201 lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~ 280 (446)
++.-+++.|++-+|+++.+..+ ..++++...++. ...+| --+++.+-...+|+ ...-
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i--~~h~~~~~~~~l-----h~~QG-----~if~~lA~~ten~d-----~k~~------ 58 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLI--SRHGEDESSWLL-----HRLQG-----TIFYKLAKKTENPD-----VKFR------ 58 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHH--HHccCCCchHHH-----HHHHh-----HHHHHHHHhccCch-----HHHH------
Confidence 4667788999999999999999 778777654321 11112 12333343322332 1222
Q ss_pred hHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 013299 281 LSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLE 347 (446)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~ 347 (446)
.+--++++|.+++ .+.|+.+..++.+|.-+....-|+++..-.+++|.+.
T Consensus 59 ----------------yLl~sve~~s~a~-~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 59 ----------------YLLGSVECFSRAV-ELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSVT 108 (111)
T ss_pred ----------------HHHHhHHHHHHHh-ccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence 2345888999999 9999999999999988777778889999888888753
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.11 Score=51.32 Aligned_cols=103 Identities=15% Similarity=0.138 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC-CC--CcHHHHHH
Q 013299 318 SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG-SNLKGWLLMARILSAQKRYEDAETILNAALDQTG-KW--EQGELLRT 393 (446)
Q Consensus 318 ~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~--~~~~~~~~ 393 (446)
.+++.....+.+.|-+..|++.++-.+.+||. ||..+...+=....+.++|+=-+..++....... +| .-+..-|.
T Consensus 104 lal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S 183 (360)
T PF04910_consen 104 LALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFS 183 (360)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHH
Confidence 34455566777888888888888888888888 6644455555555666777777777766554211 00 01245667
Q ss_pred HHHHHHHhCCH---------------HHHHHHHHHHHHHHhh
Q 013299 394 KAKVQLVQGQL---------------KGAVETYTHLLAALQV 420 (446)
Q Consensus 394 ~a~~~~~~g~~---------------~eA~~~~~~~l~l~~~ 420 (446)
.+.++...++. ++|-+.+.+++...|.
T Consensus 184 ~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 184 IALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred HHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 77788888887 8899999999888875
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.48 Score=47.46 Aligned_cols=218 Identities=15% Similarity=0.122 Sum_probs=143.3
Q ss_pred cCCHHHHHHHHHhhCCC------CCCcHH--------HHHHHHHHHHHCCChHHHHHHHHHHhc-CCCCCC-------Ch
Q 013299 174 AGDLSSLATQIEELLPG------IINRKE--------RYHILALCYYGAGEDLVALNLLRTLLS-GSEDPK-------CL 231 (446)
Q Consensus 174 ~~~~~~A~~~~~~al~~------~p~~~~--------~~~~lg~~~~~~g~~~eA~~~~~~al~-~~~~P~-------~~ 231 (446)
.|-+++|..+-+++|.. .|.... ..-++..|-.-.|++.+|+..+..+.. ....|. .+
T Consensus 288 ~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~ 367 (629)
T KOG2300|consen 288 AGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEA 367 (629)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHH
Confidence 35556666665555533 121222 233455666668999999988776551 034555 23
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHh
Q 013299 232 PALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARS 311 (446)
Q Consensus 232 ~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~ 311 (446)
..++.+|..| -.-+.++.|...|..+++.... ..+.+.+..++++.|...++ +...|+ +++.
T Consensus 368 ~ih~LlGlys-~sv~~~enAe~hf~~a~k~t~~--~dl~a~~nlnlAi~YL~~~~--------------~ed~y~-~ld~ 429 (629)
T KOG2300|consen 368 QIHMLLGLYS-HSVNCYENAEFHFIEATKLTES--IDLQAFCNLNLAISYLRIGD--------------AEDLYK-ALDL 429 (629)
T ss_pred HHHHHHhhHh-hhcchHHHHHHHHHHHHHhhhH--HHHHHHHHHhHHHHHHHhcc--------------HHHHHH-HHHh
Confidence 3445555444 4468999999999999996543 33566777888999876542 233333 3325
Q ss_pred hCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC------HHHHHHHHHHHHHccCHHHHHHHH
Q 013299 312 TNMRD----------LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN------LKGWLLMARILSAQKRYEDAETIL 375 (446)
Q Consensus 312 ~~P~~----------~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~------~~~~~~la~~~~~~g~~~eA~~~~ 375 (446)
+.|.| ..++|-.|...+.++++.||....++.++.. +.. +-.+..||.+..-.|+..|+...+
T Consensus 430 i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma-naed~~rL~a~~LvLLs~v~lslgn~~es~nmv 508 (629)
T KOG2300|consen 430 IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA-NAEDLNRLTACSLVLLSHVFLSLGNTVESRNMV 508 (629)
T ss_pred cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc-chhhHHHHHHHHHHHHHHHHHHhcchHHHHhcc
Confidence 66764 3466788999999999999999999999876 210 134557888999999999999999
Q ss_pred HHHHhhc---CCCCcHHHHHH---HHHHHHHhCC--HHHHHHHHH
Q 013299 376 NAALDQT---GKWEQGELLRT---KAKVQLVQGQ--LKGAVETYT 412 (446)
Q Consensus 376 ~~al~~~---p~~~~~~~~~~---~a~~~~~~g~--~~eA~~~~~ 412 (446)
.-++.+. | |.+..+|. +-.++...|+ -++.-+.|+
T Consensus 509 rpamqlAkKi~--Di~vqLws~si~~~L~~a~g~~~~~~e~e~~~ 551 (629)
T KOG2300|consen 509 RPAMQLAKKIP--DIPVQLWSSSILTDLYQALGEKGNEMENEAFR 551 (629)
T ss_pred chHHHHHhcCC--CchHHHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 8888654 5 65555553 3456777787 555555554
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.87 Score=45.35 Aligned_cols=200 Identities=15% Similarity=0.012 Sum_probs=108.5
Q ss_pred HHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHC-----C------ChHHHHHHHHHHhcCCCCCCCh---HHH
Q 013299 169 FAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGA-----G------EDLVALNLLRTLLSGSEDPKCL---PAL 234 (446)
Q Consensus 169 ~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-----g------~~~eA~~~~~~al~~~~~P~~~---~a~ 234 (446)
..-.+.++..+|-+++.-...++|+.. ..-.+..+-... + +...=+..++..= ..|-|.- .-+
T Consensus 306 s~~Vk~~~T~~a~q~l~lL~~ldp~~s-vs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~q--s~DiDrqQLvh~L 382 (549)
T PF07079_consen 306 SFKVKQVQTEEAKQYLALLKILDPRIS-VSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQ--SYDIDRQQLVHYL 382 (549)
T ss_pred HHHHHHHhHHHHHHHHHHHHhcCCcch-hhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHH--hhcccHHHHHHHH
Confidence 334467788888888888888888776 322221111100 0 0111122222222 2222221 122
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCC
Q 013299 235 LIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNM 314 (446)
Q Consensus 235 ~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P 314 (446)
+..+.-+.+..+.-+.|+..++.+++..+ .+......+....-..|.+.-... ...++=..+.+++...- . .+.-
T Consensus 383 ~~~Ak~lW~~g~~dekalnLLk~il~ft~-yD~ec~n~v~~fvKq~Y~qaLs~~--~~~rLlkLe~fi~e~gl-~-~i~i 457 (549)
T PF07079_consen 383 VFGAKHLWEIGQCDEKALNLLKLILQFTN-YDIECENIVFLFVKQAYKQALSMH--AIPRLLKLEDFITEVGL-T-PITI 457 (549)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHhcCC-C-cccc
Confidence 33444455555558899999999998543 332222222222222332210000 00011111222221110 0 1223
Q ss_pred CCHHHHHHHHH--HHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 013299 315 RDLSILYRLSL--EYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAA 378 (446)
Q Consensus 315 ~~~~a~~~lg~--~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~a 378 (446)
.+.+.-+.|+. -++.+|+|.++.-+..=..+++| ++ .++..+|.+++..++|+||+.++...
T Consensus 458 ~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~-~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 458 SEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SP-QAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred cHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cH-HHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 45566666643 45679999999999999999999 54 99999999999999999999998643
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.68 Score=44.07 Aligned_cols=125 Identities=15% Similarity=-0.009 Sum_probs=84.0
Q ss_pred cCCCcHHHHHHHHHHHHHHHHh-hcCCCCH----HHHHHHHHHHHhcC-CHHHHHHHHHhhCCC----C---CCcH----
Q 013299 133 VPRNNIEEAILLLMILLRKVAL-KRIEWDP----SILDHLSFAFSIAG-DLSSLATQIEELLPG----I---INRK---- 195 (446)
Q Consensus 133 ~~~~~~~eA~~~l~~~~~~~~l-~~~p~~~----~~~~~lg~~l~~~~-~~~~A~~~~~~al~~----~---p~~~---- 195 (446)
..+|+++-|..++.++ +... ...|+.. ..+++.|..+...+ +++.|+..++++.++ . ...+
T Consensus 4 ~~~~~~~~A~~~~~K~--~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~e 81 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKA--KDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSE 81 (278)
T ss_pred hhhCCHHHHHHHHHHh--hhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHH
Confidence 3567888888776443 1111 3345433 46778898888999 999999888888766 1 2222
Q ss_pred ---HHHHHHHHHHHHCCChH---HHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc
Q 013299 196 ---ERYHILALCYYGAGEDL---VALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECL 262 (446)
Q Consensus 196 ---~~~~~lg~~~~~~g~~~---eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~ 262 (446)
.....|+.++...+.++ +|...++.+- ...|+.+..+.....++.. .++.+++.+.+.+++...
T Consensus 82 lr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~--~e~~~~~~~~~L~l~il~~-~~~~~~~~~~L~~mi~~~ 151 (278)
T PF08631_consen 82 LRLSILRLLANAYLEWDTYESVEKALNALRLLE--SEYGNKPEVFLLKLEILLK-SFDEEEYEEILMRMIRSV 151 (278)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH--HhCCCCcHHHHHHHHHHhc-cCChhHHHHHHHHHHHhc
Confidence 24556788888877655 4555666666 6778888877666666555 677788888888888754
|
It is also involved in sporulation []. |
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.01 Score=40.93 Aligned_cols=46 Identities=15% Similarity=0.063 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHH
Q 013299 353 KGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLV 400 (446)
Q Consensus 353 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~ 400 (446)
++++.+|..+.++|+|++|..+++.+|+..| +|..+...+..+..+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP--~N~Qa~~L~~~i~~~ 47 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEP--DNRQAQSLKELIEDK 47 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--S-HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCC--CcHHHHHHHHHHHHH
Confidence 5778899999999999999999999999999 898888777666543
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.024 Score=53.48 Aligned_cols=76 Identities=16% Similarity=0.069 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHH
Q 013299 319 ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKV 397 (446)
Q Consensus 319 a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~ 397 (446)
.+.++=.+|.+.++++.|+.+.++.+.++|+++ .-|.-.|.++..+|.+..|..-++..++.-| +++.+-..+..+
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp-~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P--~dp~a~~ik~ql 258 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDP-YEIRDRGLIYAQLDCEHVALSDLSYFVEQCP--EDPISEMIRAQI 258 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC--CchhHHHHHHHH
Confidence 345778888999999999999999999999995 8888999999999999999999999999999 777766554443
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.98 Score=44.98 Aligned_cols=50 Identities=12% Similarity=0.010 Sum_probs=44.9
Q ss_pred HHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHH
Q 013299 360 RILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYT 412 (446)
Q Consensus 360 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~ 412 (446)
.-++.+|+|.++.-+..=..+..| .+.++-.+|.++....++++|+.++.
T Consensus 470 EyLysqgey~kc~~ys~WL~~iaP---S~~~~RLlGl~l~e~k~Y~eA~~~l~ 519 (549)
T PF07079_consen 470 EYLYSQGEYHKCYLYSSWLTKIAP---SPQAYRLLGLCLMENKRYQEAWEYLQ 519 (549)
T ss_pred HHHHhcccHHHHHHHHHHHHHhCC---cHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 447789999999988888888999 78999999999999999999999987
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.26 Score=47.98 Aligned_cols=124 Identities=15% Similarity=0.038 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH---ccCHHHHHH
Q 013299 297 RQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSA---QKRYEDAET 373 (446)
Q Consensus 297 ~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~---~g~~~eA~~ 373 (446)
..+..+..|++|+ +.+|++...+..+=.+..+..+.++-.+..++++..+|++. ..|..+-..... .-.+++...
T Consensus 46 ~~E~klsilerAL-~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~-~LW~~yL~~~q~~~~~f~v~~~~~ 123 (321)
T PF08424_consen 46 LAERKLSILERAL-KHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSP-ELWREYLDFRQSNFASFTVSDVRD 123 (321)
T ss_pred HHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCh-HHHHHHHHHHHHHhccCcHHHHHH
Confidence 4578889999999 99999999888777777788899999999999999999984 888754333222 224667778
Q ss_pred HHHHHHhhcCCC----------------CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhh
Q 013299 374 ILNAALDQTGKW----------------EQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQT 422 (446)
Q Consensus 374 ~~~~al~~~p~~----------------~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~ 422 (446)
.|.++++.-... .-..++..++..+.+.|-.+.|+..++.+++++=..+
T Consensus 124 ~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~P 188 (321)
T PF08424_consen 124 VYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFFRP 188 (321)
T ss_pred HHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcCCc
Confidence 887777432100 0134456778889999999999999999999974333
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.0041 Score=36.80 Aligned_cols=32 Identities=28% Similarity=0.285 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCC
Q 013299 196 ERYHILALCYYGAGEDLVALNLLRTLLSGSEDPK 229 (446)
Q Consensus 196 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~ 229 (446)
.+|+.+|.++...|++++|+..|++++ +.+|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~--~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKAL--ELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHH--ccCCC
Confidence 456777777777777777777777777 66665
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.48 E-value=1.1 Score=44.92 Aligned_cols=120 Identities=17% Similarity=0.021 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHHHHhh---CCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCH--HHHHHHHHHH
Q 013299 295 ATRQAKALQALVSAARST---NMR-------DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNL--KGWLLMARIL 362 (446)
Q Consensus 295 ~~~~~eAl~~~~~al~~~---~P~-------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~--~~~~~la~~~ 362 (446)
.|++.+|++....+. .. -|. .+..++-+|.-..--|-++.|+..|..|+++-..-.. -+-.++|.+|
T Consensus 336 ~~~~~~al~~i~dm~-~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~Y 414 (629)
T KOG2300|consen 336 RGDYVEALEEIVDMK-NWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISY 414 (629)
T ss_pred hCCHHHHHHHHHHHH-HHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHH
Confidence 467777877666655 43 344 4567788888777889999999999999887644212 2345789999
Q ss_pred HHccCHHHHHHHHHHHHhhcCCCC--------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 013299 363 SAQKRYEDAETILNAALDQTGKWE--------QGELLRTKAKVQLVQGQLKGAVETYTHLLAAL 418 (446)
Q Consensus 363 ~~~g~~~eA~~~~~~al~~~p~~~--------~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~ 418 (446)
...|+-++--+..+. +.|.+. ...++|..|.....++++.||....++.|+..
T Consensus 415 L~~~~~ed~y~~ld~---i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 415 LRIGDAEDLYKALDL---IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred HHhccHHHHHHHHHh---cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 998876654444433 345110 14567888888999999999999999999886
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.66 Score=45.39 Aligned_cols=113 Identities=15% Similarity=0.026 Sum_probs=87.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC----CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhc-CC---
Q 013299 313 NMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG----SNLKGWLLMARILSAQKRYEDAETILNAALDQT-GK--- 384 (446)
Q Consensus 313 ~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~----~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~--- 384 (446)
.......|...+.+..+.|+++-|...+.++...++. .+ .+.+..+.++...|+..+|+..++..+... .+
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~-~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~ 220 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLP-RVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNID 220 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCc-chHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccc
Confidence 4566778899999999999999999999999887632 33 677778999999999999999998888711 10
Q ss_pred ----------------------------CCcHHHHHHHHHHHHHh------CCHHHHHHHHHHHHHHHhhhhhhcc
Q 013299 385 ----------------------------WEQGELLRTKAKVQLVQ------GQLKGAVETYTHLLAALQVQTKTFS 426 (446)
Q Consensus 385 ----------------------------~~~~~~~~~~a~~~~~~------g~~~eA~~~~~~~l~l~~~~~~~~~ 426 (446)
.....++..+|.-.... +..++++..|++++++.|.....+-
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~ 296 (352)
T PF02259_consen 221 SISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWH 296 (352)
T ss_pred cccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHH
Confidence 01245566777777777 8899999999999999887666543
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.025 Score=46.62 Aligned_cols=82 Identities=15% Similarity=0.123 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHh-hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHH
Q 013299 317 LSILYRLSLEYAEQR---KLNAAHYYAKMLLK-LEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLR 392 (446)
Q Consensus 317 ~~a~~~lg~~~~~~~---~~~~A~~~~~~al~-l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~ 392 (446)
.+..+++++++.... +..+.+.++...++ -.|+..-++.+.|+..+.+.|+|+.++.+++..++..| +|..+.-
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~--~n~Qa~~ 109 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEP--NNRQALE 109 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCC--CcHHHHH
Confidence 567888988888754 56678889999886 56665457888999999999999999999999999999 7777766
Q ss_pred HHHHHHHH
Q 013299 393 TKAKVQLV 400 (446)
Q Consensus 393 ~~a~~~~~ 400 (446)
.+-.+..+
T Consensus 110 Lk~~ied~ 117 (149)
T KOG3364|consen 110 LKETIEDK 117 (149)
T ss_pred HHHHHHHH
Confidence 65554443
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.059 Score=46.21 Aligned_cols=109 Identities=14% Similarity=-0.038 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHH
Q 013299 294 RATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAET 373 (446)
Q Consensus 294 ~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~ 373 (446)
+.+..+++...+...- .+.|+.++.-..-|+++...|++.+|+..++....-.|..+ .+--.++.++..+|+.+ +.
T Consensus 22 ~~~~~~D~e~lL~ALr-vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p-~~kALlA~CL~~~~D~~--Wr 97 (160)
T PF09613_consen 22 RLGDPDDAEALLDALR-VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFP-YAKALLALCLYALGDPS--WR 97 (160)
T ss_pred ccCChHHHHHHHHHHH-HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCh-HHHHHHHHHHHHcCChH--HH
Confidence 3457788888888887 89999999999999999999999999999999888888885 88888999999888865 33
Q ss_pred H-HHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHH
Q 013299 374 I-LNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVET 410 (446)
Q Consensus 374 ~-~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~ 410 (446)
. -+.+++..| ++.+.. +...+....+...|...
T Consensus 98 ~~A~evle~~~---d~~a~~-Lv~~Ll~~~~~~~a~~~ 131 (160)
T PF09613_consen 98 RYADEVLESGA---DPDARA-LVRALLARADLEPAHEA 131 (160)
T ss_pred HHHHHHHhcCC---ChHHHH-HHHHHHHhccccchhhh
Confidence 3 344555554 344443 33444445555555443
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.0052 Score=36.35 Aligned_cols=30 Identities=13% Similarity=0.141 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013299 354 GWLLMARILSAQKRYEDAETILNAALDQTG 383 (446)
Q Consensus 354 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p 383 (446)
+|..+|.++..+|++++|+.+++++++.+|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 444455555555555555555555554444
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.0066 Score=39.19 Aligned_cols=40 Identities=25% Similarity=0.324 Sum_probs=28.0
Q ss_pred HHHHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCC
Q 013299 10 LEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFP 49 (446)
Q Consensus 10 ~~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~ 49 (446)
+.++.+.|.+|..+|++++|+..++++++..++.+..++|
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hp 41 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHP 41 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhccccc
Confidence 5678899999999999999999999999987766544333
|
|
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.012 Score=55.01 Aligned_cols=82 Identities=20% Similarity=0.169 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 013299 298 QAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNA 377 (446)
Q Consensus 298 ~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~ 377 (446)
..||+..++.|. -....|+.++|...|..|++++|+++ +++.-+|.+....++.-+|-.+|-+
T Consensus 113 ~kEA~~Al~~A~----------------~~~~~Gk~ekA~~lfeHAlalaP~~p-~~L~e~G~f~E~~~~iv~ADq~Y~~ 175 (472)
T KOG3824|consen 113 VKEAILALKAAG----------------RSRKDGKLEKAMTLFEHALALAPTNP-QILIEMGQFREMHNEIVEADQCYVK 175 (472)
T ss_pred hHHHHHHHHHHH----------------HHHhccchHHHHHHHHHHHhcCCCCH-HHHHHHhHHHHhhhhhHhhhhhhhe
Confidence 356666666655 34668999999999999999999996 9999999999999999999999999
Q ss_pred HHhhcCCCCcHHHHHHHHHHH
Q 013299 378 ALDQTGKWEQGELLRTKAKVQ 398 (446)
Q Consensus 378 al~~~p~~~~~~~~~~~a~~~ 398 (446)
|+...| .|.+++.+++...
T Consensus 176 ALtisP--~nseALvnR~RT~ 194 (472)
T KOG3824|consen 176 ALTISP--GNSEALVNRARTT 194 (472)
T ss_pred eeeeCC--CchHHHhhhhccc
Confidence 999999 8999998876543
|
|
| >KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.19 Score=49.25 Aligned_cols=100 Identities=9% Similarity=0.072 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccC----HH
Q 013299 296 TRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQR--KLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKR----YE 369 (446)
Q Consensus 296 ~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~--~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~----~~ 369 (446)
...++-+.....++ +.+|++..+|+.+..++.+.+ ++..=+..+++++++||.+ ..+|...-.+.....+ ..
T Consensus 89 ~~ld~eL~~~~~~L-~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RN-fh~W~YRRfV~~~~~~~~~~~~ 166 (421)
T KOG0529|consen 89 ALLDEELKYVESAL-KVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRN-FHAWHYRRFVVEQAERSRNLEK 166 (421)
T ss_pred HhhHHHHHHHHHHH-HhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCccc-ccchHHHHHHHHHHhcccccch
Confidence 34678889999999 999999999999999999876 4788999999999999999 5999988777665544 35
Q ss_pred HHHHHHHHHHhhcCCCCcHHHHHHHHHHHH
Q 013299 370 DAETILNAALDQTGKWEQGELLRTKAKVQL 399 (446)
Q Consensus 370 eA~~~~~~al~~~p~~~~~~~~~~~a~~~~ 399 (446)
+=+++.++++..++ .|..+|.++..++.
T Consensus 167 ~El~ftt~~I~~nf--SNYsaWhyRs~lL~ 194 (421)
T KOG0529|consen 167 EELEFTTKLINDNF--SNYSAWHYRSLLLS 194 (421)
T ss_pred hHHHHHHHHHhccc--hhhhHHHHHHHHHH
Confidence 66889999999899 89999999887775
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.12 Score=44.34 Aligned_cols=84 Identities=12% Similarity=-0.059 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHH
Q 013299 319 ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQ 398 (446)
Q Consensus 319 a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~ 398 (446)
.+..+..+-...++.+++...+...-.+.|..+ +.-..-|+++...|++.+|+..++...+..| ..+.+--.++.|+
T Consensus 12 gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~-e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~--~~p~~kALlA~CL 88 (160)
T PF09613_consen 12 GLIEVLSVALRLGDPDDAEALLDALRVLRPEFP-ELDLFDGWLHIVRGDWDDALRLLRELEERAP--GFPYAKALLALCL 88 (160)
T ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCch-HHHHHHHHHHHHhCCHHHHHHHHHHHhccCC--CChHHHHHHHHHH
Confidence 344445555667899999999999999999995 9999999999999999999999999988888 7777777888888
Q ss_pred HHhCCHH
Q 013299 399 LVQGQLK 405 (446)
Q Consensus 399 ~~~g~~~ 405 (446)
..+|+++
T Consensus 89 ~~~~D~~ 95 (160)
T PF09613_consen 89 YALGDPS 95 (160)
T ss_pred HHcCChH
Confidence 8888753
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.24 Score=49.02 Aligned_cols=162 Identities=16% Similarity=0.041 Sum_probs=102.5
Q ss_pred HhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhC---------CC-----C------------CCcHH---HHHHHHH
Q 013299 153 ALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELL---------PG-----I------------INRKE---RYHILAL 203 (446)
Q Consensus 153 ~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al---------~~-----~------------p~~~~---~~~~lg~ 203 (446)
++..+|...+++..++.++..+|+++.|.+..++|+ .. + +.|-. +.+....
T Consensus 32 ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~ 111 (360)
T PF04910_consen 32 LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQ 111 (360)
T ss_pred HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHH
Confidence 468899999999999999999999999998888884 11 1 22222 4555678
Q ss_pred HHHHCCChHHHHHHHHHHhcCCCCCC-ChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhH
Q 013299 204 CYYGAGEDLVALNLLRTLLSGSEDPK-CLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLS 282 (446)
Q Consensus 204 ~~~~~g~~~eA~~~~~~al~~~~~P~-~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~ 282 (446)
.+.+.|-+..|++..+-.+ .+||. ||...++....+..+.++++==+..++.........--...+..-+..+.++.
T Consensus 112 ~L~~RG~~rTAlE~~KlLl--sLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~ 189 (360)
T PF04910_consen 112 SLGRRGCWRTALEWCKLLL--SLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYF 189 (360)
T ss_pred HHHhcCcHHHHHHHHHHHH--hcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHH
Confidence 8899999999999999999 99999 88766555555555567776566666654431010000001112233333443
Q ss_pred hhhhh----hhchHHHHHHHHHHHHHHHHHHHhhCCCCH
Q 013299 283 AQSKV----AITDFDRATRQAKALQALVSAARSTNMRDL 317 (446)
Q Consensus 283 ~~~~~----~~~~~~~~~~~~eAl~~~~~al~~~~P~~~ 317 (446)
..++. ......+.+..++|-..+++|+ ...|.-.
T Consensus 190 ~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai-~~fP~vl 227 (360)
T PF04910_consen 190 RLEKEESSQSSAQSGRSENSESADEALQKAI-LRFPWVL 227 (360)
T ss_pred HhcCccccccccccccccchhHHHHHHHHHH-HHhHHHH
Confidence 33321 0001112233478888888888 6665533
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.14 E-value=2.7 Score=45.98 Aligned_cols=210 Identities=11% Similarity=0.021 Sum_probs=118.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHH
Q 013299 158 EWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIA 237 (446)
Q Consensus 158 p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~ 237 (446)
-+.|++|..+|.+..+.|...+|++.|-+| ++|..|.....+-.+.|.|++=+..+.-|-+....|.--..+.+
T Consensus 1101 ~n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~- 1174 (1666)
T KOG0985|consen 1101 CNEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIF- 1174 (1666)
T ss_pred hCChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHH-
Confidence 467888999999988889989998888654 56777778888888888998888888777742234543222221
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCH
Q 013299 238 SKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDL 317 (446)
Q Consensus 238 ~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~ 317 (446)
++.+.++..|-.++. ..|+. +.. -..|.-.+. .+.|+.|.-+|..+
T Consensus 1175 ---AyAkt~rl~elE~fi------~gpN~----A~i-~~vGdrcf~-----------~~~y~aAkl~y~~v--------- 1220 (1666)
T KOG0985|consen 1175 ---AYAKTNRLTELEEFI------AGPNV----ANI-QQVGDRCFE-----------EKMYEAAKLLYSNV--------- 1220 (1666)
T ss_pred ---HHHHhchHHHHHHHh------cCCCc----hhH-HHHhHHHhh-----------hhhhHHHHHHHHHh---------
Confidence 223344543333322 22321 111 122221111 13444444444332
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC-------------------------CCHHHHHHHHHHHHHccCHHHHH
Q 013299 318 SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG-------------------------SNLKGWLLMARILSAQKRYEDAE 372 (446)
Q Consensus 318 ~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~-------------------------~~~~~~~~la~~~~~~g~~~eA~ 372 (446)
.-|-.|+..+...|+|..|....++|-....- + ++-+..+-..|...|-|+|-+
T Consensus 1221 SN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivh-adeLeeli~~Yq~rGyFeElI 1299 (1666)
T KOG0985|consen 1221 SNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVH-ADELEELIEYYQDRGYFEELI 1299 (1666)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEe-hHhHHHHHHHHHhcCcHHHHH
Confidence 23556677777777777777777666332210 1 122233445577778888888
Q ss_pred HHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHH
Q 013299 373 TILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETY 411 (446)
Q Consensus 373 ~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~ 411 (446)
..++.++.+.- -+-..+--+|.+| ..=+++.-.+++
T Consensus 1300 sl~Ea~LGLER--AHMgmfTELaiLY-skykp~km~EHl 1335 (1666)
T KOG0985|consen 1300 SLLEAGLGLER--AHMGMFTELAILY-SKYKPEKMMEHL 1335 (1666)
T ss_pred HHHHhhhchhH--HHHHHHHHHHHHH-HhcCHHHHHHHH
Confidence 88888887754 3333333344433 333455444443
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.03 Score=52.75 Aligned_cols=72 Identities=21% Similarity=0.090 Sum_probs=65.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHH
Q 013299 164 LDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIA 237 (446)
Q Consensus 164 ~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~ 237 (446)
..++-.++.+.++++.|+.+.++.+.++|+++.-+--.|.+|.++|.+..|..-++.-+ ..-|+++.+-...
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl--~~~P~dp~a~~ik 255 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFV--EQCPEDPISEMIR 255 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHH--HhCCCchhHHHHH
Confidence 34667788899999999999999999999999999999999999999999999999999 8999999876543
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.18 Score=40.73 Aligned_cols=85 Identities=20% Similarity=0.074 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHHHhhCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------hcCCCCHHHH
Q 013299 295 ATRQAKALQALVSAARSTNMR------------DLSILYRLSLEYAEQRKLNAAHYYAKMLLK-------LEGGSNLKGW 355 (446)
Q Consensus 295 ~~~~~eAl~~~~~al~~~~P~------------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~-------l~P~~~~~~~ 355 (446)
.+.+++|...+++|. +..-. |+-.+-.|+-++...|+|++++....++|. ++.+. ...|
T Consensus 22 ~g~~~eAa~s~r~AM-~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qde-GklW 99 (144)
T PF12968_consen 22 DGAYEEAAASCRKAM-EVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDE-GKLW 99 (144)
T ss_dssp HT-HHHHHHHHHHHH-HHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTH-HHHH
T ss_pred hhhHHHHHHHHHHHH-HHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccccc-chhH
Confidence 467899999999998 75422 334566788889999999998877777664 55554 2444
Q ss_pred ----HHHHHHHHHccCHHHHHHHHHHHHhh
Q 013299 356 ----LLMARILSAQKRYEDAETILNAALDQ 381 (446)
Q Consensus 356 ----~~la~~~~~~g~~~eA~~~~~~al~~ 381 (446)
++.|..+..+|+.++|+..|+.+-+.
T Consensus 100 IaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 100 IAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 47889999999999999999988753
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.0079 Score=60.81 Aligned_cols=99 Identities=16% Similarity=0.077 Sum_probs=86.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCC
Q 013299 324 SLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQ 403 (446)
Q Consensus 324 g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~ 403 (446)
|.-+..+|+.-.|+.++.+|+-+.|........+||.++...|-.-+|-..+.+++.++. ..+..++.+|..++.+.+
T Consensus 614 glywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~--sepl~~~~~g~~~l~l~~ 691 (886)
T KOG4507|consen 614 GLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINS--SEPLTFLSLGNAYLALKN 691 (886)
T ss_pred cceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcc--cCchHHHhcchhHHHHhh
Confidence 444556899999999999999999976436788999999999999999999999999986 677889999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhh
Q 013299 404 LKGAVETYTHLLAALQVQTKT 424 (446)
Q Consensus 404 ~~eA~~~~~~~l~l~~~~~~~ 424 (446)
.+.|++.++.++++.|+..+-
T Consensus 692 i~~a~~~~~~a~~~~~~~~~~ 712 (886)
T KOG4507|consen 692 ISGALEAFRQALKLTTKCPEC 712 (886)
T ss_pred hHHHHHHHHHHHhcCCCChhh
Confidence 999999999999998876543
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.0095 Score=53.58 Aligned_cols=61 Identities=20% Similarity=0.097 Sum_probs=55.9
Q ss_pred HHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChH
Q 013299 170 AFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLP 232 (446)
Q Consensus 170 ~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~ 232 (446)
.+.+.++.+.|.+.|.+++.+.|+....|+.+|......|+++.|...|++++ +++|++..
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L--~ldp~D~~ 64 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVL--ELDPEDHG 64 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHH--cCCccccc
Confidence 45677899999999999999999999999999999999999999999999999 89998754
|
|
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=95.91 E-value=1.3 Score=41.79 Aligned_cols=138 Identities=9% Similarity=-0.089 Sum_probs=74.0
Q ss_pred HHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHh---------------cCCCCCCChHHHHHHHHHHhc
Q 013299 179 SLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLL---------------SGSEDPKCLPALLIASKICGE 243 (446)
Q Consensus 179 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al---------------~~~~~P~~~~a~~~~~~~~~~ 243 (446)
.|+.+- +.-...-++++.|..+|..|++.|++.+|..+|-.+- . .-.|.....+...+-+.+.
T Consensus 75 ~ai~WS-~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~-~~~~~e~dlfi~RaVL~yL 152 (260)
T PF04190_consen 75 AAIKWS-KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWST-KGYPSEADLFIARAVLQYL 152 (260)
T ss_dssp HHHHHH-HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHH-HTSS--HHHHHHHHHHHHH
T ss_pred HHHHHH-ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHH-hcCCcchhHHHHHHHHHHH
Confidence 444444 4444556788899999999999999988887753311 1 3456666666655555555
Q ss_pred CCCCHHHHHHHHHHHHHH----cC---------CCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHH
Q 013299 244 YPDLAEEGATFASRALEC----LG---------DGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAAR 310 (446)
Q Consensus 244 ~~~~~~eA~~~~~~al~~----~~---------~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~ 310 (446)
-.++...|...+..-++. .| +...++.-..++.+-.|-.. ....+..-.+.|+..+
T Consensus 153 ~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~~----------~~~~F~~L~~~Y~~~L- 221 (260)
T PF04190_consen 153 CLGNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCERD----------NLPLFKKLCEKYKPSL- 221 (260)
T ss_dssp HTTBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHHT-----------HHHHHHHHHHTHH---
T ss_pred HhcCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHHHHHHHhcC----------cHHHHHHHHHHhCccc-
Confidence 567888888776666654 11 11111222233333322211 1234555556667777
Q ss_pred hhCCCCHHHHHHHHHHHHH
Q 013299 311 STNMRDLSILYRLSLEYAE 329 (446)
Q Consensus 311 ~~~P~~~~a~~~lg~~~~~ 329 (446)
+.+|.-...+..+|..|..
T Consensus 222 ~rd~~~~~~L~~IG~~yFg 240 (260)
T PF04190_consen 222 KRDPSFKEYLDKIGQLYFG 240 (260)
T ss_dssp -HHHHTHHHHHHHHHHHH-
T ss_pred cccHHHHHHHHHHHHHHCC
Confidence 6777777777777777765
|
; PDB: 3LKU_E 2WPV_G. |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.018 Score=51.89 Aligned_cols=53 Identities=15% Similarity=0.045 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Q 013299 297 RQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS 350 (446)
Q Consensus 297 ~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~ 350 (446)
+.+.|.+.|.+++ ++.|+...-|+.+|....+.|+++.|...|++.++++|++
T Consensus 10 D~~aaaely~qal-~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 10 DAEAAAELYNQAL-ELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred ChHHHHHHHHHHh-hcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 3444444455555 4555555555555544444455555555555555554443
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.74 Score=39.97 Aligned_cols=62 Identities=11% Similarity=-0.020 Sum_probs=41.6
Q ss_pred HHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHhCC
Q 013299 14 FLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRALLP 92 (446)
Q Consensus 14 ~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~al~~ 92 (446)
|..++-+-+.|+-++|...|..+-+.. .. .+ =.-+..+.+.+..+.|+..+|+..|..+-..
T Consensus 62 flaAL~lA~~~k~d~Alaaf~~lektg--------~g---~Y------pvLA~mr~at~~a~kgdta~AV~aFdeia~d 123 (221)
T COG4649 62 FLAALKLAQENKTDDALAAFTDLEKTG--------YG---SY------PVLARMRAATLLAQKGDTAAAVAAFDEIAAD 123 (221)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHhcC--------CC---cc------hHHHHHHHHHHHhhcccHHHHHHHHHHHhcc
Confidence 455666667777777777666544321 10 00 1125566778889999999999999998776
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.57 E-value=3.4 Score=45.31 Aligned_cols=286 Identities=14% Similarity=0.122 Sum_probs=173.3
Q ss_pred HHHHHhCChHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCcc--------cc---ccCccccCCCcHH
Q 013299 71 ELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNL--------RS---QMGSSFVPRNNIE 139 (446)
Q Consensus 71 ~~~~~~g~~~eA~~~y~~al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~--------~~---~~~~~~~~~~~~~ 139 (446)
..++-.+-..|=|+.+++++-.|+.. +++ .++-.+++.......+..+ .+ ..+.+.+..+-+|
T Consensus 992 kAfMtadLp~eLIELLEKIvL~~S~F-se~-----~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyE 1065 (1666)
T KOG0985|consen 992 KAFMTADLPNELIELLEKIVLDNSVF-SEN-----RNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYE 1065 (1666)
T ss_pred HHHHhcCCcHHHHHHHHHHhcCCccc-ccc-----hhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHH
Confidence 35677788888899999987663222 121 1222222222111111000 01 1233455566677
Q ss_pred HHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHH
Q 013299 140 EAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLR 219 (446)
Q Consensus 140 eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~ 219 (446)
||...+.+ ..-+..+.. ......+..++|.+.-++. +.++.|..+|.+..+.|+..+|+..|-
T Consensus 1066 EAF~ifkk---------f~~n~~A~~---VLie~i~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~dAieSyi 1128 (1666)
T KOG0985|consen 1066 EAFAIFKK---------FDMNVSAIQ---VLIENIGSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVKDAIESYI 1128 (1666)
T ss_pred HHHHHHHH---------hcccHHHHH---HHHHHhhhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchHHHHHHHH
Confidence 77665422 122222221 2233456677777666654 468999999999999999999999998
Q ss_pred HHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHH
Q 013299 220 TLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQA 299 (446)
Q Consensus 220 ~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~ 299 (446)
++= ||.+. ...-.++ .+.|.+++-+.++.-|-+...... +-..|-.+|.+. ++..
T Consensus 1129 kad----Dps~y---~eVi~~a-~~~~~~edLv~yL~MaRkk~~E~~------id~eLi~AyAkt-----------~rl~ 1183 (1666)
T KOG0985|consen 1129 KAD----DPSNY---LEVIDVA-SRTGKYEDLVKYLLMARKKVREPY------IDSELIFAYAKT-----------NRLT 1183 (1666)
T ss_pred hcC----CcHHH---HHHHHHH-HhcCcHHHHHHHHHHHHHhhcCcc------chHHHHHHHHHh-----------chHH
Confidence 844 67654 3333343 346899999999988877554321 112222233322 2222
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 013299 300 KALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAAL 379 (446)
Q Consensus 300 eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al 379 (446)
.++.-+ ..|++++. -..|.-+++.|.|+.|.-+|.- ..-|-.|+..+..+|+|+.|++.-++|-
T Consensus 1184 ----elE~fi--~gpN~A~i-~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRKAn 1247 (1666)
T KOG0985|consen 1184 ----ELEEFI--AGPNVANI-QQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARKAN 1247 (1666)
T ss_pred ----HHHHHh--cCCCchhH-HHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 223333 56776654 4678888999999999888853 3667889999999999999999888774
Q ss_pred hhcCCC--------C----------------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhh
Q 013299 380 DQTGKW--------E----------------QGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQ 421 (446)
Q Consensus 380 ~~~p~~--------~----------------~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~ 421 (446)
...- | | +.+=+--+...|...|-|+|-+..++.+|.+-.-+
T Consensus 1248 s~kt-WK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAH 1312 (1666)
T KOG0985|consen 1248 STKT-WKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAH 1312 (1666)
T ss_pred chhH-HHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHH
Confidence 3211 1 0 11222344566788899999999999888775443
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.23 Score=41.93 Aligned_cols=73 Identities=16% Similarity=0.032 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHH
Q 013299 295 ATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYE 369 (446)
Q Consensus 295 ~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~ 369 (446)
.+..+++...+...- -+.|+.+++-..-|.++...|++++|+..++....-.|..+ .+--.++.++..+|+.+
T Consensus 23 ~~d~~D~e~lLdALr-vLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p-~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 23 SADPYDAQAMLDALR-VLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPP-YGKALLALCLNAKGDAE 95 (153)
T ss_pred cCCHHHHHHHHHHHH-HhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCch-HHHHHHHHHHHhcCChH
Confidence 455667777776666 77888888888888888888888888888888777666654 66667777777777654
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.40 E-value=1.6 Score=37.91 Aligned_cols=43 Identities=14% Similarity=0.105 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Q 013299 318 SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARIL 362 (446)
Q Consensus 318 ~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~ 362 (446)
.+.-.||..-.+.|++.+|.+.|..... +.+.| ....+.+.+.
T Consensus 168 sArEALglAa~kagd~a~A~~~F~qia~-Da~ap-rnirqRAq~m 210 (221)
T COG4649 168 SAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAP-RNIRQRAQIM 210 (221)
T ss_pred HHHHHHhHHHHhccchHHHHHHHHHHHc-cccCc-HHHHHHHHHH
Confidence 3444566666666666666666666544 44433 4444555444
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.08 Score=53.88 Aligned_cols=101 Identities=15% Similarity=0.012 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHH
Q 013299 295 ATRQAKALQALVSAARSTNMRDLS-ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAET 373 (446)
Q Consensus 295 ~~~~~eAl~~~~~al~~~~P~~~~-a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~ 373 (446)
.|....|+.++..|+ -..|.... .+.+|+.++...|..-+|-..+.+++.++-..| -.++.+|..+..+.+.+.|++
T Consensus 620 ~gn~~~a~~cl~~a~-~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sep-l~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 620 VGNSTFAIACLQRAL-NLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEP-LTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred cCCcHHHHHHHHHHh-ccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCc-hHHHhcchhHHHHhhhHHHHH
Confidence 366789999999999 89988665 467999999999999999999999999997776 888999999999999999999
Q ss_pred HHHHHHhhcCCCCcHHHHHHHHHHHH
Q 013299 374 ILNAALDQTGKWEQGELLRTKAKVQL 399 (446)
Q Consensus 374 ~~~~al~~~p~~~~~~~~~~~a~~~~ 399 (446)
.++.|++++| .++++...+-.+-.
T Consensus 698 ~~~~a~~~~~--~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 698 AFRQALKLTT--KCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHhcCC--CChhhHHHHHHHHH
Confidence 9999999999 78777665544433
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.18 Score=50.57 Aligned_cols=90 Identities=10% Similarity=0.088 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccC-HHHHHHHHHH
Q 013299 299 AKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKR-YEDAETILNA 377 (446)
Q Consensus 299 ~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~-~~eA~~~~~~ 377 (446)
..-+..|+.|+ ..-|.|+..|.+......+.+.+.+--..|.+++...|+++ ..|..-|.=.+.-+. .+.|.+.+.+
T Consensus 88 ~rIv~lyr~at-~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~-dLWI~aA~wefe~n~ni~saRalflr 165 (568)
T KOG2396|consen 88 NRIVFLYRRAT-NRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNP-DLWIYAAKWEFEINLNIESARALFLR 165 (568)
T ss_pred HHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCc-hhHHhhhhhHHhhccchHHHHHHHHH
Confidence 34566788888 88888888888776666666668888888888888888885 888877776666666 7888888888
Q ss_pred HHhhcCCCCcHHHHH
Q 013299 378 ALDQTGKWEQGELLR 392 (446)
Q Consensus 378 al~~~p~~~~~~~~~ 392 (446)
+|+.+| +++.+|.
T Consensus 166 gLR~np--dsp~Lw~ 178 (568)
T KOG2396|consen 166 GLRFNP--DSPKLWK 178 (568)
T ss_pred HhhcCC--CChHHHH
Confidence 888888 7766653
|
|
| >KOG3783 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.89 Score=46.23 Aligned_cols=237 Identities=16% Similarity=0.047 Sum_probs=119.5
Q ss_pred hhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHH----HHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCC
Q 013299 154 LKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKE----RYHILALCYYGAGEDLVALNLLRTLLSGSEDPK 229 (446)
Q Consensus 154 l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~----~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~ 229 (446)
....|.++....+-+..+...|+.+.|+..++..++ +.--. -++.+|.++..+.+|..|-..+.... .++-=
T Consensus 260 ~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~--desdW 335 (546)
T KOG3783|consen 260 RKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLR--DESDW 335 (546)
T ss_pred HHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH--hhhhh
Confidence 456688888888888888888888888888888887 22222 34567888888888999998888887 33332
Q ss_pred ChHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHH
Q 013299 230 CLPALLIASKICGEY--------PDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKA 301 (446)
Q Consensus 230 ~~~a~~~~~~~~~~~--------~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA 301 (446)
.--.|.+.++.|+.+ .++.+.|-.+.+.+.+.........+...+. ..++
T Consensus 336 S~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~----------------------~RKv 393 (546)
T KOG3783|consen 336 SHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFI----------------------VRKV 393 (546)
T ss_pred hHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHH----------------------HHHH
Confidence 222333444444432 2233333333333222211000000000000 0111
Q ss_pred HHHHHHHHHhhCCCCHHHH--HHHHHHHHH--cCCHHHHH--HHHHHHHhh-cCCCCHHHHHHHHHHHHHccCHHHHHHH
Q 013299 302 LQALVSAARSTNMRDLSIL--YRLSLEYAE--QRKLNAAH--YYAKMLLKL-EGGSNLKGWLLMARILSAQKRYEDAETI 374 (446)
Q Consensus 302 l~~~~~al~~~~P~~~~a~--~~lg~~~~~--~~~~~~A~--~~~~~al~l-~P~~~~~~~~~la~~~~~~g~~~eA~~~ 374 (446)
.+ |.+-. .++|..+.+. +-+.+++-. ....++.+ ..-.+.-.. ++|+..--+..+|.++..+|+...|..+
T Consensus 394 er-f~~~~-~~~~~~~la~P~~El~Y~Wngf~~~s~~~l~k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~ 471 (546)
T KOG3783|consen 394 ER-FVKRG-PLNASILLASPYYELAYFWNGFSRMSKNELEKMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKC 471 (546)
T ss_pred HH-Hhccc-cccccccccchHHHHHHHHhhcccCChhhHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 11 11111 1122222221 233333221 11111111 111111122 3443112345667888888888888877
Q ss_pred HHHHHhhcC-----CCCcHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHH
Q 013299 375 LNAALDQTG-----KWEQGELLRTKAKVQLVQGQ-LKGAVETYTHLLAAL 418 (446)
Q Consensus 375 ~~~al~~~p-----~~~~~~~~~~~a~~~~~~g~-~~eA~~~~~~~l~l~ 418 (446)
+...++..- -|-.+-++|-+|.++..+|. +.++.+.+.+|-+..
T Consensus 472 f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~ 521 (546)
T KOG3783|consen 472 FKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYA 521 (546)
T ss_pred HHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhc
Confidence 777763211 12346677778888877777 777777777665544
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.05 Score=34.88 Aligned_cols=28 Identities=21% Similarity=0.232 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 013299 319 ILYRLSLEYAEQRKLNAAHYYAKMLLKL 346 (446)
Q Consensus 319 a~~~lg~~~~~~~~~~~A~~~~~~al~l 346 (446)
++.+||.+|..+|++++|+.++++++.+
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 4455555555555555555555555443
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.13 Score=51.62 Aligned_cols=84 Identities=12% Similarity=-0.027 Sum_probs=73.5
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCC-hHHHHHHHHHHhcCCCCC
Q 013299 150 RKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGE-DLVALNLLRTLLSGSEDP 228 (446)
Q Consensus 150 ~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~eA~~~~~~al~~~~~P 228 (446)
+..++.+.+.|+..|.....-..+.+.+.+--..|.+++..+|++++.|..-|.-.+..+. .+.|...|.++| +.+|
T Consensus 94 yr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgL--R~np 171 (568)
T KOG2396|consen 94 YRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGL--RFNP 171 (568)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHh--hcCC
Confidence 4566777899999998877666667779999999999999999999999999998888887 889999999999 9999
Q ss_pred CChHHHH
Q 013299 229 KCLPALL 235 (446)
Q Consensus 229 ~~~~a~~ 235 (446)
+++..+.
T Consensus 172 dsp~Lw~ 178 (568)
T KOG2396|consen 172 DSPKLWK 178 (568)
T ss_pred CChHHHH
Confidence 9998764
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.19 Score=45.82 Aligned_cols=65 Identities=14% Similarity=0.135 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHccCHH-------HHHHHHHHHHhhc--CC--CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 013299 353 KGWLLMARILSAQKRYE-------DAETILNAALDQT--GK--WEQGELLRTKAKVQLVQGQLKGAVETYTHLLAA 417 (446)
Q Consensus 353 ~~~~~la~~~~~~g~~~-------eA~~~~~~al~~~--p~--~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l 417 (446)
..+..+||++..+|+.+ .|+..|+++++.. |. -+...+.+.+|.+..+.|++++|...|.+++..
T Consensus 119 ~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 119 GLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 34555666666666633 3333444444322 10 022456666777777777777777777776654
|
|
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.05 E-value=3.5 Score=42.53 Aligned_cols=133 Identities=11% Similarity=-0.109 Sum_probs=83.1
Q ss_pred cCCHHHHHHHHHhhCCCCCCcHHHHHHH--HHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHH
Q 013299 174 AGDLSSLATQIEELLPGIINRKERYHIL--ALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEG 251 (446)
Q Consensus 174 ~~~~~~A~~~~~~al~~~p~~~~~~~~l--g~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA 251 (446)
.|...-++..+..-+.++|.+++.+... ...+...++...+...+..++ ..+|++..++.+++...-....
T Consensus 44 ~~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~L~~ale~~~~----- 116 (620)
T COG3914 44 EGLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPL--SVNPENCPAVQNLAAALELDGL----- 116 (620)
T ss_pred cCchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhH--hcCcccchHHHHHHHHHHHhhh-----
Confidence 3444456666666677777777664433 555666677767777777777 6777776666555433211111
Q ss_pred HHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHH------HH
Q 013299 252 ATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRL------SL 325 (446)
Q Consensus 252 ~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~l------g~ 325 (446)
...-+...-+.+. +..|+|.+....+ |.
T Consensus 117 ---------------------------------------------~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~ 150 (620)
T COG3914 117 ---------------------------------------------QFLALADISEIAE-WLSPDNAEFLGHLIRFYQLGR 150 (620)
T ss_pred ---------------------------------------------HHHHHHHHHHHHH-hcCcchHHHHhhHHHHHHHHH
Confidence 1222333334466 6777777766655 77
Q ss_pred HHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHH
Q 013299 326 EYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMAR 360 (446)
Q Consensus 326 ~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~ 360 (446)
.....|+..++.....+++.+.|+++ .....+..
T Consensus 151 ~~~~l~~~~~~~~~l~~~~d~~p~~~-~~~~~~~~ 184 (620)
T COG3914 151 YLKLLGRTAEAELALERAVDLLPKYP-RVLGALMT 184 (620)
T ss_pred HHHHhccHHHHHHHHHHHHHhhhhhh-hhHhHHHH
Confidence 77778888999999999999998874 55444444
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.15 Score=51.34 Aligned_cols=86 Identities=16% Similarity=0.060 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHH
Q 013299 296 TRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQ---RKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAE 372 (446)
Q Consensus 296 ~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~---~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~ 372 (446)
.....|+..|.+++ ..-|+....+.+.+.++++. |+.-.|+..+-.|++++|.. ..+|+.|+.++..++++.+|+
T Consensus 388 ~~~~~~i~~~s~a~-q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~-~kah~~la~aL~el~r~~eal 465 (758)
T KOG1310|consen 388 SIVSGAISHYSRAI-QYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSI-QKAHFRLARALNELTRYLEAL 465 (758)
T ss_pred HHHHHHHHHHHHHh-hhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHH-HHHHHHHHHHHHHHhhHHHhh
Confidence 35678999999999 99999999999999888875 57888999999999999998 699999999999999999999
Q ss_pred HHHHHHHhhcC
Q 013299 373 TILNAALDQTG 383 (446)
Q Consensus 373 ~~~~~al~~~p 383 (446)
.....+...+|
T Consensus 466 ~~~~alq~~~P 476 (758)
T KOG1310|consen 466 SCHWALQMSFP 476 (758)
T ss_pred hhHHHHhhcCc
Confidence 99888877788
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.12 Score=51.51 Aligned_cols=126 Identities=15% Similarity=0.089 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHH
Q 013299 296 TRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETIL 375 (446)
Q Consensus 296 ~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~ 375 (446)
|+.-.|-.-...++ +..|.+|......+.+....|+|+.|...+.-+-.+-..-. .+..-+-.-++.+||+++|...-
T Consensus 303 gd~~aas~~~~~~l-r~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~-~~~~~~~r~~~~l~r~~~a~s~a 380 (831)
T PRK15180 303 GDIIAASQQLFAAL-RNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTD-STLRCRLRSLHGLARWREALSTA 380 (831)
T ss_pred cCHHHHHHHHHHHH-HhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCc-hHHHHHHHhhhchhhHHHHHHHH
Confidence 55667777888899 89999999999999999999999999998877655433332 55555667788999999999999
Q ss_pred HHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhc
Q 013299 376 NAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTF 425 (446)
Q Consensus 376 ~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~~ 425 (446)
+-.+...- +++++.-.-+......|-+|++.-.|++++.++|..+.+|
T Consensus 381 ~~~l~~ei--e~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~ 428 (831)
T PRK15180 381 EMMLSNEI--EDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGW 428 (831)
T ss_pred HHHhcccc--CChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccc
Confidence 88886554 5667776667777888999999999999999998755544
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.38 Score=43.83 Aligned_cols=88 Identities=15% Similarity=0.084 Sum_probs=55.5
Q ss_pred CCcHHHHHHHHHHHHHHHHhhcCCCC--HHHHHHHHHHHHhcCCH-------HHHHHHHHhhCCCCC------CcHHHHH
Q 013299 135 RNNIEEAILLLMILLRKVALKRIEWD--PSILDHLSFAFSIAGDL-------SSLATQIEELLPGII------NRKERYH 199 (446)
Q Consensus 135 ~~~~~eA~~~l~~~~~~~~l~~~p~~--~~~~~~lg~~l~~~~~~-------~~A~~~~~~al~~~p------~~~~~~~ 199 (446)
.-.+++|+..+..++.-..+...+.. +..+..++.++...|+. ..|.+.|++++.... +.....|
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y 169 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY 169 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence 34578888877666443333332332 34556778888888874 445555666654332 2245667
Q ss_pred HHHHHHHHCCChHHHHHHHHHHh
Q 013299 200 ILALCYYGAGEDLVALNLLRTLL 222 (446)
Q Consensus 200 ~lg~~~~~~g~~~eA~~~~~~al 222 (446)
.+|.+..+.|++++|...|.+++
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi 192 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVI 192 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHH
Confidence 77888888888888888888887
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.35 Score=38.67 Aligned_cols=98 Identities=16% Similarity=0.021 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHH
Q 013299 293 DRATRQAKALQALVSAARSTNMRDLSIL---YRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYE 369 (446)
Q Consensus 293 ~~~~~~~eAl~~~~~al~~~~P~~~~a~---~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~ 369 (446)
.+.|++-+|++..+..+ ..++++...| ..-|.++.++.. ..-||+ ....+.+|
T Consensus 7 ~~rGnhiKAL~iied~i-~~h~~~~~~~~lh~~QG~if~~lA~-----------~ten~d--~k~~yLl~---------- 62 (111)
T PF04781_consen 7 FARGNHIKALEIIEDLI-SRHGEDESSWLLHRLQGTIFYKLAK-----------KTENPD--VKFRYLLG---------- 62 (111)
T ss_pred HHccCHHHHHHHHHHHH-HHccCCCchHHHHHHHhHHHHHHHH-----------hccCch--HHHHHHHH----------
Confidence 45677888888888888 7887777543 333444432211 112333 23333333
Q ss_pred HHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 013299 370 DAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAA 417 (446)
Q Consensus 370 eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l 417 (446)
+++.+.++..+.| +.+..++.+|.-+....-|++++.-.+++|.+
T Consensus 63 -sve~~s~a~~Lsp--~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 63 -SVECFSRAVELSP--DSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred -hHHHHHHHhccCh--hHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 4667777777777 66666677666655555666666666666655
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=94.71 E-value=4.2 Score=43.42 Aligned_cols=55 Identities=20% Similarity=0.088 Sum_probs=44.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhCCC---CCC------cHHHHHHHHHHHHHCCChHHHHHHHH
Q 013299 165 DHLSFAFSIAGDLSSLATQIEELLPG---IIN------RKERYHILALCYYGAGEDLVALNLLR 219 (446)
Q Consensus 165 ~~lg~~l~~~~~~~~A~~~~~~al~~---~p~------~~~~~~~lg~~~~~~g~~~eA~~~~~ 219 (446)
...+....-.+++..|....+.+... .|. .+-.++-.|..+...|+.+.|+..|.
T Consensus 365 ~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 365 FYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 35677777889998898887766544 232 47789999999999999999999998
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.16 Score=42.82 Aligned_cols=75 Identities=17% Similarity=0.099 Sum_probs=64.1
Q ss_pred HHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHH
Q 013299 328 AEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLK 405 (446)
Q Consensus 328 ~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~ 405 (446)
...++.+++...+...--+.|+.+ +.-..-|+++...|++.||+..++...+..| ..+-.--.++.|+..+|+.+
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~-e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~--~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLK-ELDMFDGWLLIARGNYDEAARILRELLSSAG--APPYGKALLALCLNAKGDAE 95 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCcc-ccchhHHHHHHHcCCHHHHHHHHHhhhccCC--CchHHHHHHHHHHHhcCChH
Confidence 348899999999999999999995 9999999999999999999999999988877 55666667777777777653
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.12 Score=52.14 Aligned_cols=105 Identities=10% Similarity=-0.093 Sum_probs=83.8
Q ss_pred cCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHc---cCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHH
Q 013299 330 QRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQ---KRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKG 406 (446)
Q Consensus 330 ~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~---g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~e 406 (446)
.+....|+..|.+++.--|+. ...+.+.+.++++. |+.-.|+.-+..|++++| ....+||.++.++.+.+++.+
T Consensus 387 ~~~~~~~i~~~s~a~q~~~~~-~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~--s~~kah~~la~aL~el~r~~e 463 (758)
T KOG1310|consen 387 ESIVSGAISHYSRAIQYVPDA-IYLLENRAAALMKRKWRGDSYLALRDCHVALRLNP--SIQKAHFRLARALNELTRYLE 463 (758)
T ss_pred hHHHHHHHHHHHHHhhhccch-hHHHHhHHHHHHhhhccccHHHHHHhHHhhccCCh--HHHHHHHHHHHHHHHHhhHHH
Confidence 456778999999999999998 59999999999886 455577778889999999 889999999999999999999
Q ss_pred HHHHHHHHHHHHhh----hhhhccCCcchhhHHhh
Q 013299 407 AVETYTHLLAALQV----QTKTFSSDKRFYKVYFM 437 (446)
Q Consensus 407 A~~~~~~~l~l~~~----~~~~~~~~~~~~~~~~~ 437 (446)
|+++...+....|- +-.+-..+.+.+.+.|.
T Consensus 464 al~~~~alq~~~Ptd~a~~~~v~~l~rDi~aa~~~ 498 (758)
T KOG1310|consen 464 ALSCHWALQMSFPTDVARQNFVLCLPRDISAALFS 498 (758)
T ss_pred hhhhHHHHhhcCchhhhhhhhhhccccchHHHhcc
Confidence 99998877777772 22233344555555443
|
|
| >KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.74 Score=45.27 Aligned_cols=169 Identities=14% Similarity=0.035 Sum_probs=112.3
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHhc------------CCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCC--hHHHHH
Q 013299 151 KVALKRIEWDPSILDHLSFAFSIA------------GDLSSLATQIEELLPGIINRKERYHILALCYYGAGE--DLVALN 216 (446)
Q Consensus 151 ~~~l~~~p~~~~~~~~lg~~l~~~------------~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--~~eA~~ 216 (446)
..++..+|+...+|+..-.++... .-.++-+.....+++.+|+.-.+|+.+-.++.+.+. +..=++
T Consensus 53 ~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~ 132 (421)
T KOG0529|consen 53 SELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQ 132 (421)
T ss_pred HHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHH
Confidence 456788888888887544433322 134555677888999999999999999999998775 477889
Q ss_pred HHHHHhcCCCCCCChHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhch-H
Q 013299 217 LLRTLLSGSEDPKCLPALLIASKIC---GEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITD-F 292 (446)
Q Consensus 217 ~~~~al~~~~~P~~~~a~~~~~~~~---~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~-~ 292 (446)
..++++ +.||.|..++.+.--++ -...+...+=+.+.+++|..... ...+|.+....+...-...... .
T Consensus 133 lcek~L--~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfS-----NYsaWhyRs~lL~~l~~~~~~g~~ 205 (421)
T KOG0529|consen 133 LCEKAL--KQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFS-----NYSAWHYRSLLLSTLHPKEADGNF 205 (421)
T ss_pred HHHHHH--hcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccch-----hhhHHHHHHHHHHHhccccccCcc
Confidence 999999 89999988875432222 22222356677888888884222 2457777766554221100000 0
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 013299 293 DRATRQAKALQALVSAARSTNMRDLSILYRLSLEY 327 (446)
Q Consensus 293 ~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~ 327 (446)
.-......-++....|+ -.||+|+.+|++.=+.+
T Consensus 206 ~~~~~l~sEle~v~sai-FTdp~DqS~WfY~rWLl 239 (421)
T KOG0529|consen 206 MPKELLQSELEMVHSAI-FTDPEDQSCWFYHRWLL 239 (421)
T ss_pred CCHHHHHHHHHHHHHHH-hcCccccceeeehHHhh
Confidence 01234567788889999 99999999997644443
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.61 Score=41.16 Aligned_cols=99 Identities=19% Similarity=0.101 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHH----H
Q 013299 317 LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEG--GSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGE----L 390 (446)
Q Consensus 317 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P--~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~----~ 390 (446)
..++..+|..|.+.|++++|++.|.++..-.. ++-...+.++-.+-...|++.....++.++-..-.+.++.+ +
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 46788999999999999999999999876432 22235667778888889999999999999976533112322 3
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH
Q 013299 391 LRTKAKVQLVQGQLKGAVETYTHLL 415 (446)
Q Consensus 391 ~~~~a~~~~~~g~~~eA~~~~~~~l 415 (446)
....|...+..|+|.+|-+.|-.++
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccC
Confidence 3455777788899999888876553
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.35 Score=40.03 Aligned_cols=61 Identities=15% Similarity=0.174 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHh-hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHH
Q 013299 295 ATRQAKALQALVSAARS-TNMR-DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLL 357 (446)
Q Consensus 295 ~~~~~eAl~~~~~al~~-~~P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~ 357 (446)
..+..+.+.+++..+ + -+|. .-+.+|+|+..+++.++|+.|+.+++..++.+|+++ ++.-.
T Consensus 48 ~~dv~~GI~iLe~l~-~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~-Qa~~L 110 (149)
T KOG3364|consen 48 TEDVQEGIVILEDLL-KSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNR-QALEL 110 (149)
T ss_pred hHHHHHhHHHHHHHh-hhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH-HHHHH
Confidence 356789999999999 7 4444 357889999999999999999999999999999995 66554
|
|
| >PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [] | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.18 Score=31.66 Aligned_cols=32 Identities=22% Similarity=0.341 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHH--HHHHHhhcCC
Q 013299 318 SILYRLSLEYAEQRKLNAAHYY--AKMLLKLEGG 349 (446)
Q Consensus 318 ~a~~~lg~~~~~~~~~~~A~~~--~~~al~l~P~ 349 (446)
+.++.+|..+..+|++++|+.. |+-+..++|.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 4455666666666666666666 3355555554
|
; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=93.92 E-value=6 Score=37.60 Aligned_cols=133 Identities=17% Similarity=0.046 Sum_probs=83.6
Q ss_pred HHhCChHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCC-cHHHHHHHHHHHHHH-
Q 013299 74 KLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRN-NIEEAILLLMILLRK- 151 (446)
Q Consensus 74 ~~~g~~~eA~~~y~~al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~-~~~eA~~~l~~~~~~- 151 (446)
..+|+++.|..+|.|+=......+|+... .++..+..-| ......+ ++++|+..+..++.-
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~----~La~~~yn~G-------------~~l~~~~~~~~~a~~wL~~a~~~l 66 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAE----ELARVCYNIG-------------KSLLSKKDKYEEAVKWLQRAYDIL 66 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHH----HHHHHHHHHH-------------HHHHHcCCChHHHHHHHHHHHHHH
Confidence 57999999999999986652234565432 3333322211 1122344 788998887655210
Q ss_pred ----HHhhcCCCC----HHHHHHHHHHHHhcCCHH---HHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHH
Q 013299 152 ----VALKRIEWD----PSILDHLSFAFSIAGDLS---SLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRT 220 (446)
Q Consensus 152 ----~~l~~~p~~----~~~~~~lg~~l~~~~~~~---~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~ 220 (446)
......|+- ..++..++.++...+.++ +|....+.+-.-.|+.+..+.---.++...++.+++...+.+
T Consensus 67 ~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~ 146 (278)
T PF08631_consen 67 EKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMR 146 (278)
T ss_pred HhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHH
Confidence 011122222 235567888888877664 566666777777788888775544555558999999999999
Q ss_pred Hhc
Q 013299 221 LLS 223 (446)
Q Consensus 221 al~ 223 (446)
.+.
T Consensus 147 mi~ 149 (278)
T PF08631_consen 147 MIR 149 (278)
T ss_pred HHH
Confidence 993
|
It is also involved in sporulation []. |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=93.91 E-value=10 Score=40.40 Aligned_cols=314 Identities=11% Similarity=0.006 Sum_probs=171.8
Q ss_pred hHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHhhcCC
Q 013299 79 PRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIE 158 (446)
Q Consensus 79 ~~eA~~~y~~al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p 158 (446)
..-||..++-+++ .+.+.|.....+..++|..|+.. -.++++|...+.++. .+...+
T Consensus 37 I~~ai~CL~~~~~-~~~l~p~~ea~~~l~la~iL~~e-------------------T~n~~~Ae~~L~k~~---~l~~~~ 93 (608)
T PF10345_consen 37 IATAIKCLEAVLK-QFKLSPRQEARVRLRLASILLEE-------------------TENLDLAETYLEKAI---LLCERH 93 (608)
T ss_pred HHHHHHHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHH-------------------cCCHHHHHHHHHHHH---Hhcccc
Confidence 3557777777775 34556766666677788776643 346888887764321 122225
Q ss_pred CCHH----HHHHHHHHHHhcCCHHHHHHHHHhhCCCCCC----cHHHHHHHH--HHHHHCCChHHHHHHHHHHhcCCCCC
Q 013299 159 WDPS----ILDHLSFAFSIAGDLSSLATQIEELLPGIIN----RKERYHILA--LCYYGAGEDLVALNLLRTLLSGSEDP 228 (446)
Q Consensus 159 ~~~~----~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~----~~~~~~~lg--~~~~~~g~~~eA~~~~~~al~~~~~P 228 (446)
+..+ +.+.++.++.+.+... |...++++|+..-+ .....+.+- ......+++..|+..++........+
T Consensus 94 ~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~ 172 (608)
T PF10345_consen 94 RLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQR 172 (608)
T ss_pred chHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhc
Confidence 4443 3346778888888777 99999998876544 222223332 22223379999999999988312224
Q ss_pred CChHHHH----HHHHHHhcCCCCHHHHHHHHHHHHHHcC-----CCcchhhhHHHHHh-hch-hHhhhhhhhchHHHHHH
Q 013299 229 KCLPALL----IASKICGEYPDLAEEGATFASRALECLG-----DGCDQMESTANCLL-GIS-LSAQSKVAITDFDRATR 297 (446)
Q Consensus 229 ~~~~a~~----~~~~~~~~~~~~~~eA~~~~~~al~~~~-----~~~~~~~~~a~~~l-g~~-~~~~~~~~~~~~~~~~~ 297 (446)
+++.+.. ..+.+ ....+..+++++..++++.... ++.....-.++..+ -.+ ....+.... -....+.
T Consensus 173 ~d~~~~v~~~l~~~~l-~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~-~~~~L~~ 250 (608)
T PF10345_consen 173 GDPAVFVLASLSEALL-HLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKN-SKQKLKQ 250 (608)
T ss_pred CCHHHHHHHHHHHHHH-HhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHH
Confidence 5555432 22333 3345667788888887754322 11110111222222 221 111111000 0011122
Q ss_pred HHHHHHHHHHHH--H--------hhC-------CCC-H-----------H--HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 013299 298 QAKALQALVSAA--R--------STN-------MRD-L-----------S--ILYRLSLEYAEQRKLNAAHYYAKMLLKL 346 (446)
Q Consensus 298 ~~eAl~~~~~al--~--------~~~-------P~~-~-----------~--a~~~lg~~~~~~~~~~~A~~~~~~al~l 346 (446)
+.+-+....... . .++ ++. + - +++--|......+..+.|.+++.++++.
T Consensus 251 lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~ 330 (608)
T PF10345_consen 251 LQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQ 330 (608)
T ss_pred HHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHH
Confidence 222222222110 0 000 000 1 1 1223355566667777888888777663
Q ss_pred cCC-------C---C---------------HHHHHHHHHHHHHccCHHHHHHHHHHHHhh---cCC----CCcHHHHHHH
Q 013299 347 EGG-------S---N---------------LKGWLLMARILSAQKRYEDAETILNAALDQ---TGK----WEQGELLRTK 394 (446)
Q Consensus 347 ~P~-------~---~---------------~~~~~~la~~~~~~g~~~eA~~~~~~al~~---~p~----~~~~~~~~~~ 394 (446)
--+ . + .......+++....+++..|...++.+... .|. .-.+.+++..
T Consensus 331 i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~ 410 (608)
T PF10345_consen 331 IEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLL 410 (608)
T ss_pred HHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHH
Confidence 211 0 0 012335677888899999999988877754 230 0137788999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHH
Q 013299 395 AKVQLVQGQLKGAVETYTHLLAAL 418 (446)
Q Consensus 395 a~~~~~~g~~~eA~~~~~~~l~l~ 418 (446)
|......|+.+.|+..|.+..-.-
T Consensus 411 gl~~q~~g~l~~A~~~y~~~~~~~ 434 (608)
T PF10345_consen 411 GLYYQSTGDLEAALYQYQKPRFLL 434 (608)
T ss_pred HHHHHHcCCHHHHHHHHhhhHHhh
Confidence 999999999999999998555333
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.84 E-value=9.3 Score=39.57 Aligned_cols=185 Identities=15% Similarity=0.008 Sum_probs=131.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHH
Q 013299 162 SILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKIC 241 (446)
Q Consensus 162 ~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~ 241 (446)
..|..-...-...|+++...-.|++++---..+.+.|...+.-....|+..-|-..+..+.+ -.-|+.+..++..+.++
T Consensus 298 ~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~-i~~k~~~~i~L~~a~f~ 376 (577)
T KOG1258|consen 298 KNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACK-IHVKKTPIIHLLEARFE 376 (577)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhh-hcCCCCcHHHHHHHHHH
Confidence 45555566667889999999999999999999999999999999999999999999999884 45677888888777775
Q ss_pred hcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHH--HHHHHHHhhCCCCHHH
Q 013299 242 GEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQ--ALVSAARSTNMRDLSI 319 (446)
Q Consensus 242 ~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~--~~~~al~~~~P~~~~a 319 (446)
+..|+++.|...+++..+.. |+. .-......+.-+ +.|..+.+-. .+.+.+ ...-.+...
T Consensus 377 -e~~~n~~~A~~~lq~i~~e~-pg~---v~~~l~~~~~e~------------r~~~~~~~~~~~~l~s~~-~~~~~~~~i 438 (577)
T KOG1258|consen 377 -ESNGNFDDAKVILQRIESEY-PGL---VEVVLRKINWER------------RKGNLEDANYKNELYSSI-YEGKENNGI 438 (577)
T ss_pred -HhhccHHHHHHHHHHHHhhC-Cch---hhhHHHHHhHHH------------HhcchhhhhHHHHHHHHh-cccccCcch
Confidence 44689999999999999876 331 112222223222 3344454441 222222 233333333
Q ss_pred H----HHHHH-HHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcc
Q 013299 320 L----YRLSL-EYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQK 366 (446)
Q Consensus 320 ~----~~lg~-~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g 366 (446)
+ ...+. .+.-.++.+.|...+.+++...|++ ...|..+-.+...++
T Consensus 439 ~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~-k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 439 LEKLYVKFARLRYKIREDADLARIILLEANDILPDC-KVLYLELIRFELIQP 489 (577)
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCcc-HHHHHHHHHHHHhCC
Confidence 3 23333 2345789999999999999999999 588887777766665
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=93.68 E-value=11 Score=45.19 Aligned_cols=236 Identities=11% Similarity=0.047 Sum_probs=136.0
Q ss_pred HHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHH
Q 013299 170 AFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAE 249 (446)
Q Consensus 170 ~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~ 249 (446)
.+...|++..|..||+++++.+|+....+...-...+..|.+...+...+-.. ...++...-++..+--.-.+.++++
T Consensus 1458 ~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~--~~~se~~~~~~s~~~eaaW~l~qwD 1535 (2382)
T KOG0890|consen 1458 EHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLI--INRSEEVDELNSLGVEAAWRLSQWD 1535 (2382)
T ss_pred HHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchh--hccCHHHHHHHHHHHHHHhhhcchh
Confidence 44567899999999999999999988888887788888888888888888777 4555555544444333333444444
Q ss_pred HHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhh-ch--H---------------HHHHHHHHH----------
Q 013299 250 EGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAI-TD--F---------------DRATRQAKA---------- 301 (446)
Q Consensus 250 eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~-~~--~---------------~~~~~~~eA---------- 301 (446)
.-..+.. ..+.+... +. .+|.+.....+... .. . ...+-+..+
T Consensus 1536 ~~e~~l~------~~n~e~w~--~~-~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l 1606 (2382)
T KOG0890|consen 1536 LLESYLS------DRNIEYWS--VE-SIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLL 1606 (2382)
T ss_pred hhhhhhh------cccccchh--HH-HHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHH
Confidence 4333321 00000000 00 01111111000000 00 0 000001111
Q ss_pred --HHHHHHHHHhhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHh-h--cCCC---CHHHHHHHHHHHHHccCH
Q 013299 302 --LQALVSAARSTNMRDL-----SILYRLSLEYAEQRKLNAAHYYAKMLLK-L--EGGS---NLKGWLLMARILSAQKRY 368 (446)
Q Consensus 302 --l~~~~~al~~~~P~~~-----~a~~~lg~~~~~~~~~~~A~~~~~~al~-l--~P~~---~~~~~~~la~~~~~~g~~ 368 (446)
+....+.+....|++- +-|-+....=....+..+-+-.+++++- + +|+. -.++|...|.+-...|++
T Consensus 1607 ~el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~ 1686 (2382)
T KOG0890|consen 1607 LELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHL 1686 (2382)
T ss_pred HHHHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccH
Confidence 1111112201112211 2222333222222335555556666532 2 4332 147999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Q 013299 369 EDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQV 420 (446)
Q Consensus 369 ~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~ 420 (446)
+-|-.++-+|.+..+ +.++.-+|+.+..+|+-..|+..+++.++.+..
T Consensus 1687 q~A~nall~A~e~r~----~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1687 QRAQNALLNAKESRL----PEIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred HHHHHHHHhhhhccc----chHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 999999988887655 478888999999999999999999999988754
|
|
| >KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.53 E-value=1 Score=50.32 Aligned_cols=124 Identities=15% Similarity=0.065 Sum_probs=91.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc-----CCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCC--
Q 013299 314 MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLE-----GGSN--LKGWLLMARILSAQKRYEDAETILNAALDQTGK-- 384 (446)
Q Consensus 314 P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~-----P~~~--~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-- 384 (446)
|+....+.+++......+....|+..+.++..+. |++| +....+++.++...++++.|+.+.+.|++.+-+
T Consensus 1012 ~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~ 1091 (1236)
T KOG1839|consen 1012 PNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVL 1091 (1236)
T ss_pred HHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhc
Confidence 5556667777777777778888888888776652 4443 234567888888888999999999988875421
Q ss_pred ----CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhccCCcchhhHHhh
Q 013299 385 ----WEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKVYFM 437 (446)
Q Consensus 385 ----~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~ 437 (446)
-.....+..++.+...+|++..|+...+....+.+.+....-.+.+.|.-+.+
T Consensus 1092 g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~~qlg~~hsrt~~S~~~~~ 1148 (1236)
T KOG1839|consen 1092 GPKELETALSYHALARLFESMKDFRNALEHEKVTYGIYKEQLGPDHSRTKESSEWLN 1148 (1236)
T ss_pred CccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHhhCCCcccchhhHHHHH
Confidence 02456677788888888999999999998899888887777777777665544
|
|
| >COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription] | Back alignment and domain information |
|---|
Probab=93.22 E-value=4.4 Score=39.00 Aligned_cols=37 Identities=16% Similarity=0.143 Sum_probs=25.7
Q ss_pred HhhhhcccChHHHHHHHHHHHHHHHhhhc-CCCCCCCC
Q 013299 17 AKCLQGLGRFKEAAQSCKVILDIVESSFA-EGFPENLG 53 (446)
Q Consensus 17 g~~~~~~g~~eeA~~~~~~~l~~~~~~~~-~~~~~~~~ 53 (446)
|-..-..+.++-|++.+..+.-..-+.+| +|.|.+..
T Consensus 20 a~L~r~~rd~dlAEEa~~dA~~~Ale~WPr~G~P~~Pa 57 (415)
T COG4941 20 AALARYLRDLDLAEEALQDAFAAALERWPRAGPPRNPA 57 (415)
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHHhCcccCCCCChH
Confidence 34455677888888888887766666777 55666543
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=93.20 E-value=0.13 Score=29.59 Aligned_cols=24 Identities=29% Similarity=0.218 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHH
Q 013299 196 ERYHILALCYYGAGEDLVALNLLR 219 (446)
Q Consensus 196 ~~~~~lg~~~~~~g~~~eA~~~~~ 219 (446)
.+++.||.++...|++++|+..++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 345666666666666666666654
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription] | Back alignment and domain information |
|---|
Probab=93.18 E-value=8.4 Score=37.13 Aligned_cols=123 Identities=14% Similarity=0.009 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHH
Q 013299 296 TRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQ-----RKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYED 370 (446)
Q Consensus 296 ~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~-----~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~e 370 (446)
+..++++..+.+++....|.-....-.++-++... -++..=..+|.-...+.|+ | .+-.|.+..+....-.+.
T Consensus 270 ~lI~eg~all~rA~~~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apS-P-vV~LNRAVAla~~~Gp~a 347 (415)
T COG4941 270 ALIDEGLALLDRALASRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPS-P-VVTLNRAVALAMREGPAA 347 (415)
T ss_pred HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCC-C-eEeehHHHHHHHhhhHHh
Confidence 45789999999998334477667777777777653 4677777778877788887 5 677778888877777888
Q ss_pred HHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Q 013299 371 AETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQV 420 (446)
Q Consensus 371 A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~ 420 (446)
++..++......--.++...+-.+|.++.+.|+.++|.+.|++++++.++
T Consensus 348 gLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~ 397 (415)
T COG4941 348 GLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARN 397 (415)
T ss_pred HHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCC
Confidence 88888877654110145667788999999999999999999999999753
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.98 E-value=5.7 Score=41.87 Aligned_cols=185 Identities=15% Similarity=0.014 Sum_probs=95.7
Q ss_pred HHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHh---------cCCCC
Q 013299 177 LSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICG---------EYPDL 247 (446)
Q Consensus 177 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~---------~~~~~ 247 (446)
.++|++..+ +..+|..|-.|+..-...-.++-|+..|-++- . -|.-- ..-.++.+.. ...|+
T Consensus 679 ledA~qfiE-----dnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~--d-Y~Gik-~vkrl~~i~s~~~q~aei~~~~g~ 749 (1189)
T KOG2041|consen 679 LEDAIQFIE-----DNPHPRLWRLLAEYALFKLALDTAEHAFVRCG--D-YAGIK-LVKRLRTIHSKEQQRAEISAFYGE 749 (1189)
T ss_pred hHHHHHHHh-----cCCchHHHHHHHHHHHHHHhhhhHhhhhhhhc--c-ccchh-HHHHhhhhhhHHHHhHhHhhhhcc
Confidence 455555544 33467888888888777777778887777655 1 12110 0000111111 11367
Q ss_pred HHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCC---HHHHHHHH
Q 013299 248 AEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRD---LSILYRLS 324 (446)
Q Consensus 248 ~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~---~~a~~~lg 324 (446)
++||...|-.+=+. + +....+.. .|++-.-.+.++..- -+-+| -.++.++|
T Consensus 750 feeaek~yld~drr---D---LAielr~k------------------lgDwfrV~qL~r~g~--~d~dD~~~e~A~r~ig 803 (1189)
T KOG2041|consen 750 FEEAEKLYLDADRR---D---LAIELRKK------------------LGDWFRVYQLIRNGG--SDDDDEGKEDAFRNIG 803 (1189)
T ss_pred hhHhhhhhhccchh---h---hhHHHHHh------------------hhhHHHHHHHHHccC--CCcchHHHHHHHHHHH
Confidence 77777776322110 0 00111111 233333333333211 12222 35777888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCH
Q 013299 325 LEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQL 404 (446)
Q Consensus 325 ~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~ 404 (446)
..++.+..+++|.++|.+.-.. .++..++.....|++-. .....-| ++...+-.+|..+...|.-
T Consensus 804 ~~fa~~~~We~A~~yY~~~~~~---------e~~~ecly~le~f~~LE----~la~~Lp--e~s~llp~~a~mf~svGMC 868 (1189)
T KOG2041|consen 804 ETFAEMMEWEEAAKYYSYCGDT---------ENQIECLYRLELFGELE----VLARTLP--EDSELLPVMADMFTSVGMC 868 (1189)
T ss_pred HHHHHHHHHHHHHHHHHhccch---------HhHHHHHHHHHhhhhHH----HHHHhcC--cccchHHHHHHHHHhhchH
Confidence 8888888888888888765221 12344455556666532 2223335 5556666666666666666
Q ss_pred HHHHHHH
Q 013299 405 KGAVETY 411 (446)
Q Consensus 405 ~eA~~~~ 411 (446)
++|+++|
T Consensus 869 ~qAV~a~ 875 (1189)
T KOG2041|consen 869 DQAVEAY 875 (1189)
T ss_pred HHHHHHH
Confidence 6666655
|
|
| >COG2912 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.96 E-value=0.7 Score=43.15 Aligned_cols=73 Identities=15% Similarity=0.007 Sum_probs=58.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHH
Q 013299 321 YRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAK 396 (446)
Q Consensus 321 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~ 396 (446)
.++=..+.+.++++.|....++.+.++|+++ .-+.-.|.+|..+|.+.-|+..++..++.-| +.+.+-..++.
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp-~eirDrGliY~ql~c~~vAl~dl~~~~~~~P--~~~~a~~ir~~ 257 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLNPEDP-YEIRDRGLIYAQLGCYHVALEDLSYFVEHCP--DDPIAEMIRAQ 257 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhCCCCh-hhccCcHHHHHhcCCchhhHHHHHHHHHhCC--CchHHHHHHHH
Confidence 3555667778889999999999999999885 7888889999999999999999998888888 66665554443
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=92.84 E-value=0.75 Score=35.84 Aligned_cols=53 Identities=19% Similarity=0.139 Sum_probs=27.0
Q ss_pred HcCCHHHHHHHHHHHHhhcCCCC--------HHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 013299 329 EQRKLNAAHYYAKMLLKLEGGSN--------LKGWLLMARILSAQKRYEDAETILNAALDQ 381 (446)
Q Consensus 329 ~~~~~~~A~~~~~~al~l~P~~~--------~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 381 (446)
+.|++.+|++.+.+.+....... ..++.++|.++...|++++|+..+++|+++
T Consensus 10 ~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 10 RSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 45666666655555554433221 123444555555555555555555555544
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.71 E-value=12 Score=37.58 Aligned_cols=241 Identities=10% Similarity=0.005 Sum_probs=143.4
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCC
Q 013299 151 KVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKC 230 (446)
Q Consensus 151 ~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~ 230 (446)
+.++.-.|-.+++|+.-..-+...++-+.|+...++++.-.|. .+..++.++-..++-++-..+|+++++ .+..+.
T Consensus 292 ~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q-~L~r~y 367 (660)
T COG5107 292 NQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQ-DLKRKY 367 (660)
T ss_pred HHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHH-HHHHHH
Confidence 4555666788888888888888888888888888888776665 667778877777776666677777762 110000
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHh-hchhHhhhhhhhchHHHHHHHHHHHHHHHHHH
Q 013299 231 LPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLL-GISLSAQSKVAITDFDRATRQAKALQALVSAA 309 (446)
Q Consensus 231 ~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~l-g~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al 309 (446)
. ..-+...-...|+++-.-+++-+-+.. ...+|+.+ -.+. |..-.+.|...|-++-
T Consensus 368 s---~~~s~~~s~~D~N~e~~~Ell~kr~~k--------~t~v~C~~~N~v~------------r~~Gl~aaR~~F~k~r 424 (660)
T COG5107 368 S---MGESESASKVDNNFEYSKELLLKRINK--------LTFVFCVHLNYVL------------RKRGLEAARKLFIKLR 424 (660)
T ss_pred h---hhhhhhhccccCCccccHHHHHHHHhh--------hhhHHHHHHHHHH------------HHhhHHHHHHHHHHHh
Confidence 0 000000011112221111111100000 01222211 1111 2223566777787776
Q ss_pred HhhCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcH
Q 013299 310 RSTNMRDLSILYRLSLE-YAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQG 388 (446)
Q Consensus 310 ~~~~P~~~~a~~~lg~~-~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 388 (446)
+..=-..+++..-|.+ +.-+|++..|-..|+-.+.-.|+++ ......-..+...++-+.|.+.|++++..-.+..-.
T Consensus 425 -k~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~-~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k 502 (660)
T COG5107 425 -KEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDST-LYKEKYLLFLIRINDEENARALFETSVERLEKTQLK 502 (660)
T ss_pred -ccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCch-HHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhh
Confidence 4442344444443433 4457899999999999999999974 555556667778899999999999888654311124
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Q 013299 389 ELLRTKAKVQLVQGQLKGAVETYTHLLAALQV 420 (446)
Q Consensus 389 ~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~ 420 (446)
.+|-.+-.....-|+...+...=++..++.|+
T Consensus 503 ~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 503 RIYDKMIEYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HHHHHHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence 55666666677788888888777777777664
|
|
| >COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.69 E-value=0.17 Score=47.77 Aligned_cols=78 Identities=9% Similarity=0.009 Sum_probs=69.2
Q ss_pred cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHH-HHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHH
Q 013299 156 RIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHI-LALCYYGAGEDLVALNLLRTLLSGSEDPKCLPAL 234 (446)
Q Consensus 156 ~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~-lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~ 234 (446)
+-|.|+..|.....-..+.|-+.+--..|-++++.+|.+++.|.. -+.-+...++++.+...|.++| +.||++|..|
T Consensus 102 kff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~gl--R~N~~~p~iw 179 (435)
T COG5191 102 KFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGL--RMNSRSPRIW 179 (435)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhh--ccCCCCchHH
Confidence 458999999988877778888889999999999999999999977 5566778899999999999999 9999999877
Q ss_pred H
Q 013299 235 L 235 (446)
Q Consensus 235 ~ 235 (446)
.
T Consensus 180 ~ 180 (435)
T COG5191 180 I 180 (435)
T ss_pred H
Confidence 5
|
|
| >COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.65 E-value=0.18 Score=47.65 Aligned_cols=85 Identities=11% Similarity=0.072 Sum_probs=66.9
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHH-HHHHHHHccCHHHHHHHHHHHHhhc
Q 013299 304 ALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLL-MARILSAQKRYEDAETILNAALDQT 382 (446)
Q Consensus 304 ~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~-la~~~~~~g~~~eA~~~~~~al~~~ 382 (446)
.|.++. -.-|+|+..|...+.-....|.+.+--..|.++++..|.+ ++.|.. -+.=+...++++.+.+.+.++++.+
T Consensus 95 ~~~R~t-nkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~n-vdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N 172 (435)
T COG5191 95 ELYRST-NKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLN-VDLWIYCCAFELFEIANIESSRAMFLKGLRMN 172 (435)
T ss_pred eeehhh-hcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-ceeeeeeccchhhhhccHHHHHHHHHhhhccC
Confidence 445555 5778888888777666666778888888899999999988 588876 4556677888888999999999998
Q ss_pred CCCCcHHHHH
Q 013299 383 GKWEQGELLR 392 (446)
Q Consensus 383 p~~~~~~~~~ 392 (446)
| +++.+|+
T Consensus 173 ~--~~p~iw~ 180 (435)
T COG5191 173 S--RSPRIWI 180 (435)
T ss_pred C--CCchHHH
Confidence 8 7777775
|
|
| >PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [] | Back alignment and domain information |
|---|
Probab=92.58 E-value=0.19 Score=31.55 Aligned_cols=34 Identities=24% Similarity=0.202 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHH--HHhcCCCCCCC
Q 013299 195 KERYHILALCYYGAGEDLVALNLLR--TLLSGSEDPKC 230 (446)
Q Consensus 195 ~~~~~~lg~~~~~~g~~~eA~~~~~--~al~~~~~P~~ 230 (446)
++.|+.+|-.+...|++++|+..|+ -+. .++|.|
T Consensus 1 ~e~~y~~a~~~y~~~ky~~A~~~~~y~~l~--~ld~~n 36 (36)
T PF07720_consen 1 PEYLYGLAYNFYQKGKYDEAIHFFQYAFLC--ALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--HHTTT-
T ss_pred CcHHHHHHHHHHHHhhHHHHHHHHHHHHHH--HhcccC
Confidence 3567888888888899999988844 555 456543
|
; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A. |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=92.54 E-value=1.1 Score=45.00 Aligned_cols=111 Identities=18% Similarity=0.126 Sum_probs=83.3
Q ss_pred HHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCCh
Q 013299 152 VALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCL 231 (446)
Q Consensus 152 ~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~ 231 (446)
.++...|.+|......+.+....|.|+.+.+.+.-+-.+-..-..+..-+-..+..+||+++|...-+-.+ .-.-+++
T Consensus 314 ~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l--~~eie~~ 391 (831)
T PRK15180 314 AALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMML--SNEIEDE 391 (831)
T ss_pred HHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHh--ccccCCh
Confidence 56788899999999999999999999999988765544433334444445566778999999999999988 5555566
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC
Q 013299 232 PALLIASKICGEYPDLAEEGATFASRALECLGDG 265 (446)
Q Consensus 232 ~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~ 265 (446)
++....++. -..++-++++..+.++++.+.+|.
T Consensus 392 ei~~iaa~s-a~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 392 EVLTVAAGS-ADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred hheeeeccc-HHHHhHHHHHHHHHHHHhccCChh
Confidence 654433332 345788999999999999965553
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.54 E-value=15 Score=38.18 Aligned_cols=252 Identities=11% Similarity=-0.044 Sum_probs=151.3
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH-CCChHHHHHHHHHHhcCCCCC
Q 013299 150 RKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYG-AGEDLVALNLLRTLLSGSEDP 228 (446)
Q Consensus 150 ~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~eA~~~~~~al~~~~~P 228 (446)
+...+...|-.-..|-..+..-.+.|..+.++..|++++..-|-+.+.|..+-..... .|+.+.=...|++|+ ...-
T Consensus 68 y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~--~~vG 145 (577)
T KOG1258|consen 68 YDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAK--SYVG 145 (577)
T ss_pred HHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHH--Hhcc
Confidence 4667888899888999999999999999999999999999999999999887555444 466666667888888 4443
Q ss_pred CChH---HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhh-----------------------------------
Q 013299 229 KCLP---ALLIASKICGEYPDLAEEGATFASRALECLGDGCDQME----------------------------------- 270 (446)
Q Consensus 229 ~~~~---a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~----------------------------------- 270 (446)
.+.. .|-.....- ...+....-...|+|.++ .|...-...
T Consensus 146 ~dF~S~~lWdkyie~e-n~qks~k~v~~iyeRile-iP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~ 223 (577)
T KOG1258|consen 146 LDFLSDPLWDKYIEFE-NGQKSWKRVANIYERILE-IPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKI 223 (577)
T ss_pred cchhccHHHHHHHHHH-hccccHHHHHHHHHHHHh-hhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhc
Confidence 3321 111111111 123344444455555554 221100000
Q ss_pred ------------------------hHHHHHhhchhH-------hhhhh--hhc---------------------------
Q 013299 271 ------------------------STANCLLGISLS-------AQSKV--AIT--------------------------- 290 (446)
Q Consensus 271 ------------------------~~a~~~lg~~~~-------~~~~~--~~~--------------------------- 290 (446)
......++.... ..... ...
T Consensus 224 ~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~y 303 (577)
T KOG1258|consen 224 THSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYY 303 (577)
T ss_pred ccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHH
Confidence 000000000000 00000 000
Q ss_pred --hHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc-CCCCHHHHHHHHHHHHHccC
Q 013299 291 --DFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLE-GGSNLKGWLLMARILSAQKR 367 (446)
Q Consensus 291 --~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~-P~~~~~~~~~la~~~~~~g~ 367 (446)
...+.|.+....-.|++++ .--....+.|.+.+.-....|+.+-|-..+.++.++. |+.+ ..+..-+.+-...|+
T Consensus 304 Ldf~i~~g~~~~~~~l~ercl-i~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~-~i~L~~a~f~e~~~n 381 (577)
T KOG1258|consen 304 LDFEITLGDFSRVFILFERCL-IPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTP-IIHLLEARFEESNGN 381 (577)
T ss_pred hhhhhhcccHHHHHHHHHHHH-hHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCc-HHHHHHHHHHHhhcc
Confidence 0123456666666777777 6666666777777766666777777777777776654 3433 555566666666777
Q ss_pred HHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHH
Q 013299 368 YEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVE 409 (446)
Q Consensus 368 ~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~ 409 (446)
++.|...+++..+..| +...+-.........+|..+.+..
T Consensus 382 ~~~A~~~lq~i~~e~p--g~v~~~l~~~~~e~r~~~~~~~~~ 421 (577)
T KOG1258|consen 382 FDDAKVILQRIESEYP--GLVEVVLRKINWERRKGNLEDANY 421 (577)
T ss_pred HHHHHHHHHHHHhhCC--chhhhHHHHHhHHHHhcchhhhhH
Confidence 7777777777776667 666666667777777777777764
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=92.21 E-value=0.19 Score=28.91 Aligned_cols=22 Identities=14% Similarity=0.002 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHH
Q 013299 319 ILYRLSLEYAEQRKLNAAHYYA 340 (446)
Q Consensus 319 a~~~lg~~~~~~~~~~~A~~~~ 340 (446)
+++.+|.++..+|++++|+..+
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 3444555555555555555444
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.20 E-value=12 Score=36.16 Aligned_cols=57 Identities=11% Similarity=0.134 Sum_probs=38.4
Q ss_pred HHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 013299 200 ILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALEC 261 (446)
Q Consensus 200 ~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~ 261 (446)
..-..-++..+..+-++.-..++ ++||+...++..++. +..--..+|...++++++.
T Consensus 189 eIMQ~AWRERnp~~RI~~A~~AL--eIN~eCA~AyvLLAE---EEa~Ti~~AE~l~k~ALka 245 (556)
T KOG3807|consen 189 EIMQKAWRERNPPARIKAAYQAL--EINNECATAYVLLAE---EEATTIVDAERLFKQALKA 245 (556)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHH--hcCchhhhHHHhhhh---hhhhhHHHHHHHHHHHHHH
Confidence 33344456666677778888888 888888888876542 2233456778888888774
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.00 E-value=13 Score=37.46 Aligned_cols=209 Identities=14% Similarity=0.016 Sum_probs=128.6
Q ss_pred HHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 013299 182 TQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALEC 261 (446)
Q Consensus 182 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~ 261 (446)
=.|++++.--|-.++.|+-...-+...++-+.|+...++++ ...|. ..+.+ ..|+.-.++.++--.+|++.++.
T Consensus 289 y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~--~~sps---L~~~l-se~yel~nd~e~v~~~fdk~~q~ 362 (660)
T COG5107 289 YIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGI--EMSPS---LTMFL-SEYYELVNDEEAVYGCFDKCTQD 362 (660)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcc--cCCCc---hheeH-HHHHhhcccHHHHhhhHHHHHHH
Confidence 35788888889999999999999999999999999999999 67775 33333 34566555555555667766653
Q ss_pred cCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013299 262 LGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAK 341 (446)
Q Consensus 262 ~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~ 341 (446)
+.. - +..|..-...+ ..|.++..-+.+-+-. + .-.-+|.-+-..-.+..-++.|...|-
T Consensus 363 L~r--------~-ys~~~s~~~s~--------~D~N~e~~~Ell~kr~---~-k~t~v~C~~~N~v~r~~Gl~aaR~~F~ 421 (660)
T COG5107 363 LKR--------K-YSMGESESASK--------VDNNFEYSKELLLKRI---N-KLTFVFCVHLNYVLRKRGLEAARKLFI 421 (660)
T ss_pred HHH--------H-Hhhhhhhhhcc--------ccCCccccHHHHHHHH---h-hhhhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 211 0 00111000000 0111211112221111 1 222333322222334455788888998
Q ss_pred HHHhhcCCCCHHHHHHHHHH-HHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Q 013299 342 MLLKLEGGSNLKGWLLMARI-LSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQV 420 (446)
Q Consensus 342 ~al~l~P~~~~~~~~~la~~-~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~ 420 (446)
++-+..=... .++..-|.+ +..+|++.-|-.+++-.+...| |.+..-+-.-..+...|+-..|...|+++++...+
T Consensus 422 k~rk~~~~~h-~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~--d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~ 498 (660)
T COG5107 422 KLRKEGIVGH-HVYIYCAFIEYYATGDRATAYNIFELGLLKFP--DSTLYKEKYLLFLIRINDEENARALFETSVERLEK 498 (660)
T ss_pred HHhccCCCCc-ceeeeHHHHHHHhcCCcchHHHHHHHHHHhCC--CchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHH
Confidence 8866541221 444444444 5678999999999999999999 66655555556778899999999999977765544
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=91.96 E-value=1 Score=40.17 Aligned_cols=73 Identities=21% Similarity=0.243 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC---CHHHHHHHHHHHHHccCHHHHH
Q 013299 299 AKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS---NLKGWLLMARILSAQKRYEDAE 372 (446)
Q Consensus 299 ~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~---~~~~~~~la~~~~~~g~~~eA~ 372 (446)
++|...|-++-+.-.=++++..+.||..|. ..+.++|+..+.+++++.+.+ ..+.+..|+.++..+|+++.|-
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 466666665542223467888888887666 778888999999998886543 1377788888888888888774
|
|
| >PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.90 E-value=0.37 Score=30.65 Aligned_cols=33 Identities=15% Similarity=0.271 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhh
Q 013299 389 ELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQ 421 (446)
Q Consensus 389 ~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~ 421 (446)
+++..+|.+-...++|++|++.|+++|++..+.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l 34 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEEL 34 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 356677888888888888888888888876543
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat []. |
| >PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ] | Back alignment and domain information |
|---|
Probab=91.50 E-value=0.85 Score=43.07 Aligned_cols=62 Identities=13% Similarity=-0.052 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q 013299 301 ALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSA 364 (446)
Q Consensus 301 Al~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~ 364 (446)
|..+|.+|+ .+.|++...++.||.+....|+.=+|+-+|-|++...--.+ .+..++..++.+
T Consensus 1 A~~~Y~~A~-~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~-~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAI-RLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFP-SARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHH-HH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--H-HHHHHHHHHHHH
T ss_pred CHHHHHHHH-HhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcH-HHHHHHHHHHHH
Confidence 566777777 77777777777777777777777777777777765544443 666666666555
|
This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B. |
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=91.47 E-value=1.1 Score=34.91 Aligned_cols=63 Identities=13% Similarity=0.090 Sum_probs=49.3
Q ss_pred HHccCHHHHHHHHHHHHhhcCCCC-------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhc
Q 013299 363 SAQKRYEDAETILNAALDQTGKWE-------QGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTF 425 (446)
Q Consensus 363 ~~~g~~~eA~~~~~~al~~~p~~~-------~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~~ 425 (446)
...|+|.+|++.+.+..+...... ...+..++|.+....|++++|+..+++++++.++..+..
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~ 78 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRR 78 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHH
Confidence 467999999988888876543111 135677899999999999999999999999998765543
|
|
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=91.32 E-value=2.1 Score=47.45 Aligned_cols=129 Identities=14% Similarity=0.050 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHc----C---CHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 013299 294 RATRQAKALQALVSAARSTNMRD---LSILYRLSLEYAEQ----R---KLNAAHYYAKMLLKLEGGSNLKGWLLMARILS 363 (446)
Q Consensus 294 ~~~~~~eAl~~~~~al~~~~P~~---~~a~~~lg~~~~~~----~---~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~ 363 (446)
..+.|+.|+..|+++. .--|.- .++.+.+|..+.++ | .+++|+..|++.- -.|.-| --|...|.+|.
T Consensus 487 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~ 563 (932)
T PRK13184 487 AEKLYDQALIFYRRIR-ESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAP-LEYLGKALVYQ 563 (932)
T ss_pred hhHHHHHHHHHHHHHh-hcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCc-hHHHhHHHHHH
Confidence 3578999999999999 888875 46889999888754 3 5778888887753 356655 67888999999
Q ss_pred HccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHHHhhhhhhccC
Q 013299 364 AQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQ-----GQLKGAVETYTHLLAALQVQTKTFSS 427 (446)
Q Consensus 364 ~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~-----g~~~eA~~~~~~~l~l~~~~~~~~~~ 427 (446)
.+|+|+|-++++.-|++..| .++.+-..+-.+-.++ .+-..|....--++.+.|+.......
T Consensus 564 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (932)
T PRK13184 564 RLGEYNEEIKSLLLALKRYS--QHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKISSREE 630 (932)
T ss_pred HhhhHHHHHHHHHHHHHhcC--CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccchHH
Confidence 99999999999999999999 7765544333322222 22345555555566666665444433
|
|
| >KOG4814 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.27 E-value=3.4 Score=43.04 Aligned_cols=99 Identities=11% Similarity=0.035 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHH
Q 013299 319 ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN-----LKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRT 393 (446)
Q Consensus 319 a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~-----~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~ 393 (446)
++.+-|.-+.+..+|..+++.|...+.--|.+. +....+++.+|..+.+.|.|.++++.|-+.+| .++...+.
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~--~~~l~q~~ 433 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDR--QSPLCQLL 433 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcc--ccHHHHHH
Confidence 345666677778888888888888877666541 24566778888888888888888888888888 77777777
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHh
Q 013299 394 KAKVQLVQGQLKGAVETYTHLLAALQ 419 (446)
Q Consensus 394 ~a~~~~~~g~~~eA~~~~~~~l~l~~ 419 (446)
.-.+....|.-++|+.+..+......
T Consensus 434 ~~~~~~~E~~Se~AL~~~~~~~s~~~ 459 (872)
T KOG4814|consen 434 MLQSFLAEDKSEEALTCLQKIKSSED 459 (872)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhhhc
Confidence 77777777888888888777766543
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=90.84 E-value=28 Score=37.98 Aligned_cols=243 Identities=14% Similarity=0.029 Sum_probs=138.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCC--c-------HHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCC
Q 013299 160 DPSILDHLSFAFSIAGDLSSLATQIEELLPGIIN--R-------KERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKC 230 (446)
Q Consensus 160 ~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~--~-------~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~ 230 (446)
.|..-...+..+....++.+|..+..++-..-|. . .+..--.|.+....|+.++|+...+.++ ..-|.+
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al--~~L~~~ 491 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLAL--VQLPEA 491 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH--Hhcccc
Confidence 4445556677777788888888777666544333 1 1222235778888999999999999999 555554
Q ss_pred hH-----HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcc-hhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHH
Q 013299 231 LP-----ALLIASKICGEYPDLAEEGATFASRALECLGDGCD-QMESTANCLLGISLSAQSKVAITDFDRATRQAKALQA 304 (446)
Q Consensus 231 ~~-----a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~-~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~ 304 (446)
.. +....+.+ ..-.|++++|..+...+.+.....+. .+...+......++..+|.. .+++....
T Consensus 492 ~~~~r~~~~sv~~~a-~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~---------~~a~~~~~ 561 (894)
T COG2909 492 AYRSRIVALSVLGEA-AHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQV---------ARAEQEKA 561 (894)
T ss_pred cchhhhhhhhhhhHH-HHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHH---------HHHHHHHH
Confidence 32 22222222 23368899999998888775322211 11122222334444444411 23333333
Q ss_pred HHHHH---HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC------CHHHHHHHHHHHHHccCHHHHHHHH
Q 013299 305 LVSAA---RSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS------NLKGWLLMARILSAQKRYEDAETIL 375 (446)
Q Consensus 305 ~~~al---~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~------~~~~~~~la~~~~~~g~~~eA~~~~ 375 (446)
|...- -...|-+.....-.+.++...-+++.+.....+.+++.-.. ...+.+.|+.+....|++++|...+
T Consensus 562 ~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l 641 (894)
T COG2909 562 FNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQL 641 (894)
T ss_pred HHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 33322 03344444444444444444444888888888877764321 1112347899999999999999998
Q ss_pred HHHHhhcCCCC---cHHH--HHHHHHHHHHhCCHHHHHHHHHHH
Q 013299 376 NAALDQTGKWE---QGEL--LRTKAKVQLVQGQLKGAVETYTHL 414 (446)
Q Consensus 376 ~~al~~~p~~~---~~~~--~~~~a~~~~~~g~~~eA~~~~~~~ 414 (446)
+....+--.++ +..+ +......-..+|+..+|.....+.
T Consensus 642 ~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 642 DELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred HHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence 88776532111 1111 222333446778888887776653
|
|
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=90.80 E-value=5.1 Score=44.55 Aligned_cols=130 Identities=16% Similarity=0.056 Sum_probs=96.6
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 013299 245 PDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLS 324 (446)
Q Consensus 245 ~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg 324 (446)
.+.++.|+..|+|.....|...+. ..|.+.+|+.+..++.+... ...+++|+..|++.. --|.-|--+...|
T Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 559 (932)
T PRK13184 488 EKLYDQALIFYRRIRESFPGRKEG--YEAQFRLGITLLEKASEQGD----PRDFTQALSEFSYLH--GGVGAPLEYLGKA 559 (932)
T ss_pred hHHHHHHHHHHHHHhhcCCCcccc--hHHHHHhhHHHHHHHHhcCC----hHHHHHHHHHHHHhc--CCCCCchHHHhHH
Confidence 357899999999999977765443 46889999998887764322 136899999999766 4677787888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHc-----cCHHHHHHHHHHHHhhcC
Q 013299 325 LEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQ-----KRYEDAETILNAALDQTG 383 (446)
Q Consensus 325 ~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~-----g~~~eA~~~~~~al~~~p 383 (446)
.+|.++|+++|=+++|.-|++--|++| ..-...-.+-.++ .+-..|+...--++..-|
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (932)
T PRK13184 560 LVYQRLGEYNEEIKSLLLALKRYSQHP-EISRLRDHLVYRLHESLYKHRREALVFMLLALWIAP 622 (932)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhcCCCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 999999999999999999999999997 5433332222222 334566666667777777
|
|
| >PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ] | Back alignment and domain information |
|---|
Probab=90.77 E-value=0.79 Score=43.26 Aligned_cols=62 Identities=16% Similarity=-0.002 Sum_probs=52.0
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHH
Q 013299 336 AHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLV 400 (446)
Q Consensus 336 A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~ 400 (446)
|+.+|.+|+.+.|++. ..|+.+|.+....|+.=+|+-+|-+++-..- ..+.+..++..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G-~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~--Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNG-NPYNQLAVLASYQGDDLDAVYYYIRSLAVRI--PFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBS-HHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB----HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCC-CcccchhhhhccccchHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHH
Confidence 7899999999999995 9999999999999999999999999996543 367888888888877
|
This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B. |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.76 E-value=14 Score=34.53 Aligned_cols=208 Identities=14% Similarity=0.192 Sum_probs=119.3
Q ss_pred cCCHHHHHHHHHhhCCCCCCcHH----HHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHH
Q 013299 174 AGDLSSLATQIEELLPGIINRKE----RYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAE 249 (446)
Q Consensus 174 ~~~~~~A~~~~~~al~~~p~~~~----~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~ 249 (446)
..++++|+..|++++++.|...+ +.-++..+.+++|+|++-...|.+.+ .+. .+.+. .+..+
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL----------TYI-kSAVT---rNySE 105 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL----------TYI-KSAVT---RNYSE 105 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH----------HHH-HHHHh---ccccH
Confidence 34889999999999999887765 45556778888888988888888888 122 11121 12222
Q ss_pred HHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHH----HHHH
Q 013299 250 EGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILY----RLSL 325 (446)
Q Consensus 250 eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~----~lg~ 325 (446)
..+...--.+.. + -+.+.. +.-|+..+..++.| .|-..|+ .||.
T Consensus 106 KsIN~IlDyiSt---------S---~~m~LL--------------Q~FYeTTL~ALkdA------KNeRLWFKTNtKLgk 153 (440)
T KOG1464|consen 106 KSINSILDYIST---------S---KNMDLL--------------QEFYETTLDALKDA------KNERLWFKTNTKLGK 153 (440)
T ss_pred HHHHHHHHHHhh---------h---hhhHHH--------------HHHHHHHHHHHHhh------hcceeeeeccchHhh
Confidence 222222111110 0 001100 11233333333332 3334443 7888
Q ss_pred HHHHcCCHHHHHHHHHHH---HhhcCC-CC-------HHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHH-
Q 013299 326 EYAEQRKLNAAHYYAKML---LKLEGG-SN-------LKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRT- 393 (446)
Q Consensus 326 ~~~~~~~~~~A~~~~~~a---l~l~P~-~~-------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~- 393 (446)
++...+.+..-.+.+++. ..-+.. ++ .+.+..--.+|..+++-+.--..|++++....--.++.+.-.
T Consensus 154 l~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvI 233 (440)
T KOG1464|consen 154 LYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVI 233 (440)
T ss_pred hheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHH
Confidence 888887776655555443 332211 10 234444456788888888888889999976421014444332
Q ss_pred ---HHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhccCCcch
Q 013299 394 ---KAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRF 431 (446)
Q Consensus 394 ---~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~~~~~~~~ 431 (446)
-|...++.|++++|-..|=.+++ +++..|.+.+-
T Consensus 234 RECGGKMHlreg~fe~AhTDFFEAFK----NYDEsGspRRt 270 (440)
T KOG1464|consen 234 RECGGKMHLREGEFEKAHTDFFEAFK----NYDESGSPRRT 270 (440)
T ss_pred HHcCCccccccchHHHHHhHHHHHHh----cccccCCcchh
Confidence 25667888999999888876664 55666665553
|
|
| >COG2912 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.35 E-value=1.3 Score=41.39 Aligned_cols=69 Identities=22% Similarity=0.036 Sum_probs=59.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHH
Q 013299 166 HLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLI 236 (446)
Q Consensus 166 ~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~ 236 (446)
++-.++.+.++++.|..+-++.+.++|.++.-+.-.|.+|.+.|.+.-|+..++..+ ..-|+++.+-..
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~--~~~P~~~~a~~i 254 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFV--EHCPDDPIAEMI 254 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHH--HhCCCchHHHHH
Confidence 455677788899999999999999999999999999999999999999999999988 778888776543
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=90.14 E-value=22 Score=36.26 Aligned_cols=128 Identities=14% Similarity=0.032 Sum_probs=67.5
Q ss_pred CCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhh
Q 013299 208 AGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKV 287 (446)
Q Consensus 208 ~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~ 287 (446)
.|+++++....+..- +-|.-|.-+.....-++++.|..+.|+... . + +...+.|+.-
T Consensus 274 ~~d~~~v~~~i~~~~---ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~-------~-D-----~~~rFeLAl~------- 330 (443)
T PF04053_consen 274 RGDFEEVLRMIAASN---LLPNIPKDQGQSIARFLEKKGYPELALQFV-------T-D-----PDHRFELALQ------- 330 (443)
T ss_dssp TT-HHH-----HHHH---TGGG--HHHHHHHHHHHHHTT-HHHHHHHS-------S-------HHHHHHHHHH-------
T ss_pred cCChhhhhhhhhhhh---hcccCChhHHHHHHHHHHHCCCHHHHHhhc-------C-C-----hHHHhHHHHh-------
Confidence 567777766665221 234333333333333455566665554432 2 1 2233444332
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccC
Q 013299 288 AITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKR 367 (446)
Q Consensus 288 ~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~ 367 (446)
.|+++.|.+.. ...+++..|-.||.....+|+++-|+.+|+++ .-+..|..++...|+
T Consensus 331 -------lg~L~~A~~~a------~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~---------~d~~~L~lLy~~~g~ 388 (443)
T PF04053_consen 331 -------LGNLDIALEIA------KELDDPEKWKQLGDEALRQGNIELAEECYQKA---------KDFSGLLLLYSSTGD 388 (443)
T ss_dssp -------CT-HHHHHHHC------CCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHC---------T-HHHHHHHHHHCT-
T ss_pred -------cCCHHHHHHHH------HhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhh---------cCccccHHHHHHhCC
Confidence 24556655442 33458889999999999999999999999886 123346677778888
Q ss_pred HHHHHHHHHHHHh
Q 013299 368 YEDAETILNAALD 380 (446)
Q Consensus 368 ~~eA~~~~~~al~ 380 (446)
-+.=....+.|..
T Consensus 389 ~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 389 REKLSKLAKIAEE 401 (443)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7554444444443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.84 E-value=1.4 Score=41.64 Aligned_cols=60 Identities=22% Similarity=0.237 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHh
Q 013299 163 ILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLL 222 (446)
Q Consensus 163 ~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al 222 (446)
++..++..+...|+++.+++.+++.+..+|-+...|..+-..|+..|+...|+..|++.-
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 344445555555555555555555555555555555555555555555555555555443
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.61 E-value=2.6 Score=39.92 Aligned_cols=64 Identities=13% Similarity=0.067 Sum_probs=48.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 013299 316 DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALD 380 (446)
Q Consensus 316 ~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 380 (446)
...++..++..+...|+++.++..+++.+.++|-+. ..|..+-.++...|+...|+..|++.-.
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E-~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDE-PAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccch-HHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 356677777777777888888888888888888773 7777777788888888888887776654
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=89.37 E-value=4.5 Score=30.27 Aligned_cols=60 Identities=13% Similarity=0.112 Sum_probs=35.6
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhcCCCCcH---HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Q 013299 358 MARILSAQKRYEDAETILNAALDQTGKWEQG---ELLRTKAKVQLVQGQLKGAVETYTHLLAALQ 419 (446)
Q Consensus 358 la~~~~~~g~~~eA~~~~~~al~~~p~~~~~---~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~ 419 (446)
-|.=++.+.+.++|+..++++++..+ +.. .++-.+..++...|++.+.++.--+-+++..
T Consensus 12 ~GlkLY~~~~~~~Al~~W~~aL~k~~--~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~ 74 (80)
T PF10579_consen 12 KGLKLYHQNETQQALQKWRKALEKIT--DREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAE 74 (80)
T ss_pred HHHHHhccchHHHHHHHHHHHHhhcC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666777777777776655 332 3333445566777777777766666666543
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.35 E-value=33 Score=36.52 Aligned_cols=184 Identities=14% Similarity=0.014 Sum_probs=103.7
Q ss_pred HHHHhhhhcccChHHHHHHHHHH------HHHHHh---------hhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCC
Q 013299 14 FLKAKCLQGLGRFKEAAQSCKVI------LDIVES---------SFAEGFPENLGADCKLQETLNRAVELLPELWKLADA 78 (446)
Q Consensus 14 ~~~g~~~~~~g~~eeA~~~~~~~------l~~~~~---------~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~ 78 (446)
..+|..----|+||||++.|-.+ |+..-+ ...+|..+. -.+..+.|+...|..+...-.
T Consensus 738 ~q~aei~~~~g~feeaek~yld~drrDLAielr~klgDwfrV~qL~r~g~~d~------dD~~~e~A~r~ig~~fa~~~~ 811 (1189)
T KOG2041|consen 738 QQRAEISAFYGEFEEAEKLYLDADRRDLAIELRKKLGDWFRVYQLIRNGGSDD------DDEGKEDAFRNIGETFAEMME 811 (1189)
T ss_pred HHhHhHhhhhcchhHhhhhhhccchhhhhHHHHHhhhhHHHHHHHHHccCCCc------chHHHHHHHHHHHHHHHHHHH
Confidence 34555555668999999988663 222111 112332221 123356788888888888888
Q ss_pred hHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHhhcCC
Q 013299 79 PRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIE 158 (446)
Q Consensus 79 ~~eA~~~y~~al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p 158 (446)
+++|.++|...-.. + +..+.+.+ .+.+++- +......|
T Consensus 812 We~A~~yY~~~~~~------e-------~~~ecly~--------------------le~f~~L---------E~la~~Lp 849 (1189)
T KOG2041|consen 812 WEEAAKYYSYCGDT------E-------NQIECLYR--------------------LELFGEL---------EVLARTLP 849 (1189)
T ss_pred HHHHHHHHHhccch------H-------hHHHHHHH--------------------HHhhhhH---------HHHHHhcC
Confidence 88888888876443 1 11122111 1112221 22234459
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHH
Q 013299 159 WDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIAS 238 (446)
Q Consensus 159 ~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~ 238 (446)
++...+--+|..+...|.-++|+++|-+--. |..+ -.....++++.+|.+.-++-- -|.-- .++..-
T Consensus 850 e~s~llp~~a~mf~svGMC~qAV~a~Lr~s~--pkaA------v~tCv~LnQW~~avelaq~~~----l~qv~-tliak~ 916 (1189)
T KOG2041|consen 850 EDSELLPVMADMFTSVGMCDQAVEAYLRRSL--PKAA------VHTCVELNQWGEAVELAQRFQ----LPQVQ-TLIAKQ 916 (1189)
T ss_pred cccchHHHHHHHHHhhchHHHHHHHHHhccC--cHHH------HHHHHHHHHHHHHHHHHHhcc----chhHH-HHHHHH
Confidence 9999999999999999999999988854321 2111 112335566777777665522 23211 111111
Q ss_pred HHHhcCCCCHHHHHHHHHHH
Q 013299 239 KICGEYPDLAEEGATFASRA 258 (446)
Q Consensus 239 ~~~~~~~~~~~eA~~~~~~a 258 (446)
...+...++.-+|++.++++
T Consensus 917 aaqll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 917 AAQLLADANHMEAIEKDRKA 936 (1189)
T ss_pred HHHHHhhcchHHHHHHhhhc
Confidence 11223356777888877776
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=89.19 E-value=6.1 Score=35.35 Aligned_cols=100 Identities=14% Similarity=0.032 Sum_probs=63.6
Q ss_pred HHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchH
Q 013299 213 VALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDF 292 (446)
Q Consensus 213 eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~ 292 (446)
+.+..+.+-+ .+.++|...++. ..+.|+ ++|...|-++-. .+ ....+...+.|+..|.+.
T Consensus 95 ~~l~~L~~~t---k~S~dP~llYy~----Wsr~~d-~~A~~~fL~~E~-~~---~l~t~elq~aLAtyY~kr-------- 154 (203)
T PF11207_consen 95 QELERLQEET---KNSQDPYLLYYH----WSRFGD-QEALRRFLQLEG-TP---ELETAELQYALATYYTKR-------- 154 (203)
T ss_pred HHHHHHHHHH---ccCCCccHHHHH----hhccCc-HHHHHHHHHHcC-CC---CCCCHHHHHHHHHHHHcc--------
Confidence 4444555555 344555554432 122233 455555443322 11 222367778888887653
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHcCCHHHHH
Q 013299 293 DRATRQAKALQALVSAARSTNMR----DLSILYRLSLEYAEQRKLNAAH 337 (446)
Q Consensus 293 ~~~~~~~eAl~~~~~al~~~~P~----~~~a~~~lg~~~~~~~~~~~A~ 337 (446)
+.++|+..+-+++ ++.+. |++++..|+.++..+|+++.|=
T Consensus 155 ----D~~Kt~~ll~~~L-~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 155 ----DPEKTIQLLLRAL-ELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred ----CHHHHHHHHHHHH-HhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 5689999999999 87644 5999999999999999999873
|
|
| >KOG4814 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.73 E-value=8.2 Score=40.32 Aligned_cols=87 Identities=17% Similarity=0.109 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcc
Q 013299 293 DRATRQAKALQALVSAARSTNMRDL------SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQK 366 (446)
Q Consensus 293 ~~~~~~~eAl~~~~~al~~~~P~~~------~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g 366 (446)
.+..+|..+++.|...+ .--|+|- ...-+++.+|....++|.|.++++.|-+.+|.++ -.....-.+....|
T Consensus 365 F~~~~Y~~s~~~y~~Sl-~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~-l~q~~~~~~~~~E~ 442 (872)
T KOG4814|consen 365 FKMEKYVVSIRFYKLSL-KDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSP-LCQLLMLQSFLAED 442 (872)
T ss_pred HHHHHHHHHHHHHHHHH-HhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccH-HHHHHHHHHHHHhc
Confidence 45678999999999999 8888764 3456889999999999999999999999999985 77777777778889
Q ss_pred CHHHHHHHHHHHHhh
Q 013299 367 RYEDAETILNAALDQ 381 (446)
Q Consensus 367 ~~~eA~~~~~~al~~ 381 (446)
.-++|+.+..+....
T Consensus 443 ~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 443 KSEEALTCLQKIKSS 457 (872)
T ss_pred chHHHHHHHHHHHhh
Confidence 999999998877654
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=88.69 E-value=2.4 Score=31.72 Aligned_cols=59 Identities=10% Similarity=0.061 Sum_probs=43.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHH---HHHHHccCHHHHHHHHHHHHhh
Q 013299 322 RLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMA---RILSAQKRYEDAETILNAALDQ 381 (446)
Q Consensus 322 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la---~~~~~~g~~~eA~~~~~~al~~ 381 (446)
.-|.-++.+++.++|+...++++...++.+ ..|..+| .++...|+|.+.+++--+=+++
T Consensus 11 e~GlkLY~~~~~~~Al~~W~~aL~k~~~~~-~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 11 EKGLKLYHQNETQQALQKWRKALEKITDRE-DRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhhcCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335556678888999999999999888864 6666655 4577788888888876554443
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=88.59 E-value=3.8 Score=36.12 Aligned_cols=14 Identities=7% Similarity=0.088 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHH
Q 013299 296 TRQAKALQALVSAA 309 (446)
Q Consensus 296 ~~~~eAl~~~~~al 309 (446)
++|.+|...|-.++
T Consensus 127 r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 127 RDFKEAAELFLDSL 140 (177)
T ss_pred chHHHHHHHHHccC
Confidence 45677777776555
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.45 E-value=22 Score=33.37 Aligned_cols=50 Identities=14% Similarity=0.118 Sum_probs=33.8
Q ss_pred CCCcHHHHHHHHHHHHHHHHhhcCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHhhC
Q 013299 134 PRNNIEEAILLLMILLRKVALKRIEWDPS----ILDHLSFAFSIAGDLSSLATQIEELL 188 (446)
Q Consensus 134 ~~~~~~eA~~~l~~~~~~~~l~~~p~~~~----~~~~lg~~l~~~~~~~~A~~~~~~al 188 (446)
...+.++|+..+ +.+++..|+-.+ ++-..-.+..+.+++++-.+.|.+.+
T Consensus 39 ~e~~p~~Al~sF-----~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL 92 (440)
T KOG1464|consen 39 KEDEPKEALSSF-----QKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL 92 (440)
T ss_pred cccCHHHHHHHH-----HHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 455788888765 556776665433 44455567778888888888777665
|
|
| >PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=88.41 E-value=0.82 Score=29.05 Aligned_cols=27 Identities=22% Similarity=0.267 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHh
Q 013299 354 GWLLMARILSAQKRYEDAETILNAALD 380 (446)
Q Consensus 354 ~~~~la~~~~~~g~~~eA~~~~~~al~ 380 (446)
++..||.+-...++|++|+.-|+++++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344444444445555555555544444
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat []. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.23 E-value=9.7 Score=39.88 Aligned_cols=84 Identities=12% Similarity=-0.115 Sum_probs=41.7
Q ss_pred cccCCCcHHHHHHHHHH-----HHHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHH
Q 013299 131 SFVPRNNIEEAILLLMI-----LLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCY 205 (446)
Q Consensus 131 ~~~~~~~~~eA~~~l~~-----~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 205 (446)
.++..|+.++|+..... .+.+..-+.+-.+.+.+..++.-+.+...+.-|.+.|.+.-+. -.+-.++
T Consensus 712 mLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~--------ksiVqlH 783 (1081)
T KOG1538|consen 712 MLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL--------KSLVQLH 783 (1081)
T ss_pred HhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH--------HHHhhhe
Confidence 34455666666653210 0112222223334445555555555556666666666554332 1234455
Q ss_pred HHCCChHHHHHHHHHHh
Q 013299 206 YGAGEDLVALNLLRTLL 222 (446)
Q Consensus 206 ~~~g~~~eA~~~~~~al 222 (446)
...+++++|...-++-=
T Consensus 784 ve~~~W~eAFalAe~hP 800 (1081)
T KOG1538|consen 784 VETQRWDEAFALAEKHP 800 (1081)
T ss_pred eecccchHhHhhhhhCc
Confidence 56677777766655543
|
|
| >KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.44 E-value=5.8 Score=42.12 Aligned_cols=179 Identities=14% Similarity=0.125 Sum_probs=114.5
Q ss_pred cHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChH--------HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC
Q 013299 194 RKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLP--------ALLIASKICGEYPDLAEEGATFASRALECLGDG 265 (446)
Q Consensus 194 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~--------a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~ 265 (446)
.++...++-..|....+|+.-+...+..- .-|+... .++..+----...|+.+.|+...-.+++...+.
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk---~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~v 276 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLK---RIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPV 276 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHH---hCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCC
Confidence 46778888889999999998888776644 3453221 122211111235677888888888888865443
Q ss_pred cchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHH
Q 013299 266 CDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQR-KLNAAHYYAKMLL 344 (446)
Q Consensus 266 ~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~-~~~~A~~~~~~al 344 (446)
.+..+...|.+|..+ +..+.++-.+..+.|+++|++|- +..|.-..-. |++.++...| .++..+++=.-.+
T Consensus 277 ----apDm~Cl~GRIYKDm--F~~S~ytDa~s~~~a~~WyrkaF-eveP~~~sGI-N~atLL~aaG~~Fens~Elq~Igm 348 (1226)
T KOG4279|consen 277 ----APDMYCLCGRIYKDM--FIASNYTDAESLNHAIEWYRKAF-EVEPLEYSGI-NLATLLRAAGEHFENSLELQQIGM 348 (1226)
T ss_pred ----CCceeeeechhhhhh--hhccCCcchhhHHHHHHHHHHHh-ccCchhhccc-cHHHHHHHhhhhccchHHHHHHHH
Confidence 356788889988654 33444555677899999999999 9999854333 4555555444 5666665555555
Q ss_pred hhcC-----CC--CHHHHHHHHHHHH---HccCHHHHHHHHHHHHhhcC
Q 013299 345 KLEG-----GS--NLKGWLLMARILS---AQKRYEDAETILNAALDQTG 383 (446)
Q Consensus 345 ~l~P-----~~--~~~~~~~la~~~~---~~g~~~eA~~~~~~al~~~p 383 (446)
.++. .. ....|+..|..+. ..++|..|+..-+...++.|
T Consensus 349 kLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~ 397 (1226)
T KOG4279|consen 349 KLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKP 397 (1226)
T ss_pred HHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCC
Confidence 5542 11 0122333333322 34789999999999999988
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=85.89 E-value=55 Score=35.24 Aligned_cols=115 Identities=12% Similarity=0.026 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHH
Q 013299 297 RQAKALQALVSAARSTNMRDLS----ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAE 372 (446)
Q Consensus 297 ~~~eAl~~~~~al~~~~P~~~~----a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~ 372 (446)
+.+.|...+.+.. ...+-+.+ ++..+|.-....+..++|...+..+.....+. ..+.-...+-...++++.+.
T Consensus 256 d~~~A~~~~~~~~-~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~--~~~e~r~r~Al~~~dw~~~~ 332 (644)
T PRK11619 256 DAENARLMIPSLV-RAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQST--SLLERRVRMALGTGDRRGLN 332 (644)
T ss_pred CHHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCc--HHHHHHHHHHHHccCHHHHH
Confidence 4577888887765 45543332 33455555554433677888887765433332 33333334444788998887
Q ss_pred HHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 013299 373 TILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLA 416 (446)
Q Consensus 373 ~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~ 416 (446)
.++...-.... .....+|=+|..+...|+.++|...|+++..
T Consensus 333 ~~i~~L~~~~~--~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 333 TWLARLPMEAK--EKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHhcCHhhc--cCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 77776433222 4567777788998889999999999999744
|
|
| >PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ] | Back alignment and domain information |
|---|
Probab=85.19 E-value=21 Score=33.05 Aligned_cols=175 Identities=15% Similarity=0.108 Sum_probs=80.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHH-HHHHHHHHHHH-CCChHHHHHHHHHHhcCCCCCC--ChHHHHHHHH
Q 013299 164 LDHLSFAFSIAGDLSSLATQIEELLPGIINRKE-RYHILALCYYG-AGEDLVALNLLRTLLSGSEDPK--CLPALLIASK 239 (446)
Q Consensus 164 ~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~-~~~~lg~~~~~-~g~~~eA~~~~~~al~~~~~P~--~~~a~~~~~~ 239 (446)
+..++.+..+.|++++.+.+.++++..+|+-.. -..-|..+|-. .|....+...+.... ..... +....- ...
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e--~~~~~~~~~~~~~-~i~ 80 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIE--QKEENKGNEKQVK-LIK 80 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHTTTTHHHHH-HHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHh--hhhcccchhHHHH-HHH
Confidence 345777888889999999999998888665433 33334444432 355555555554443 11111 111110 110
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHcCC----CcchhhhHHHH--HhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHh--
Q 013299 240 ICGEYPDLAEEGATFASRALECLGD----GCDQMESTANC--LLGISLSAQSKVAITDFDRATRQAKALQALVSAARS-- 311 (446)
Q Consensus 240 ~~~~~~~~~~eA~~~~~~al~~~~~----~~~~~~~~a~~--~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~-- 311 (446)
-+.. .-.++=...+..++..+.. ......+.+++ ..|..|....... ....+..-.++|..+|++|+ +
T Consensus 81 ~yk~--kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~-~~~~~~~~~~~a~~aY~~A~-~~a 156 (236)
T PF00244_consen 81 DYKK--KIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFD-SGDEKKEAAEKALEAYEEAL-EIA 156 (236)
T ss_dssp HHHH--HHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCT-THHHHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHH--HHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccc-cchhhHHHHHHHHHhhhhHH-HHH
Confidence 0000 0112223334444443211 10011122222 2355554443322 11123334466777777666 4
Q ss_pred ---hCCCCHHHH---HHHHHHHHH-cCCHHHHHHHHHHHHh
Q 013299 312 ---TNMRDLSIL---YRLSLEYAE-QRKLNAAHYYAKMLLK 345 (446)
Q Consensus 312 ---~~P~~~~a~---~~lg~~~~~-~~~~~~A~~~~~~al~ 345 (446)
+.|.||--+ .|.+..|+. .|+.++|+...++|+.
T Consensus 157 ~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 157 KKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred hcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 456666422 344444443 6777777777666654
|
There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A .... |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.03 E-value=51 Score=34.86 Aligned_cols=89 Identities=9% Similarity=0.060 Sum_probs=42.9
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHH
Q 013299 311 STNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGEL 390 (446)
Q Consensus 311 ~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 390 (446)
+++-.+.+.+..++.-+.....+.-|-+.|++.=.+ . .+..++...++++||...-++--+.-| +.
T Consensus 741 kld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~------k---siVqlHve~~~W~eAFalAe~hPe~~~-----dV 806 (1081)
T KOG1538|consen 741 KLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL------K---SLVQLHVETQRWDEAFALAEKHPEFKD-----DV 806 (1081)
T ss_pred hcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH------H---HHhhheeecccchHhHhhhhhCccccc-----cc
Confidence 455555555555555555555555555555443110 0 123344455666666665554444333 23
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHH
Q 013299 391 LRTKAKVQLVQGQLKGAVETYTH 413 (446)
Q Consensus 391 ~~~~a~~~~~~g~~~eA~~~~~~ 413 (446)
|+-.|.-+.+..+|+||-+.|.+
T Consensus 807 y~pyaqwLAE~DrFeEAqkAfhk 829 (1081)
T KOG1538|consen 807 YMPYAQWLAENDRFEEAQKAFHK 829 (1081)
T ss_pred cchHHHHhhhhhhHHHHHHHHHH
Confidence 44444444455555555555543
|
|
| >KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.30 E-value=4.7 Score=45.40 Aligned_cols=119 Identities=14% Similarity=-0.037 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc-------CCCCHHHHHHHHHHHHHccCHHHH
Q 013299 299 AKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLE-------GGSNLKGWLLMARILSAQKRYEDA 371 (446)
Q Consensus 299 ~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~-------P~~~~~~~~~la~~~~~~g~~~eA 371 (446)
.+++..+....+.++|..+..+..|+.++.+.+++++|+....+|+-+. +.+....+.+++...+..+....|
T Consensus 955 ~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~a 1034 (1236)
T KOG1839|consen 955 PESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGA 1034 (1236)
T ss_pred hhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccch
Confidence 3455588766657899999999999999999999999999988886653 222246788899888999999999
Q ss_pred HHHHHHHHhh--------cCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Q 013299 372 ETILNAALDQ--------TGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQ 419 (446)
Q Consensus 372 ~~~~~~al~~--------~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~ 419 (446)
+..+.++..+ .| .-.....+++.++...++++.|+...+.+++...
T Consensus 1035 l~~~~ra~~l~~Ls~ge~hP--~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~ 1088 (1236)
T KOG1839|consen 1035 LKSLNRALKLKLLSSGEDHP--PTALSFINLELLLLGVEEADTALRYLESALAKNK 1088 (1236)
T ss_pred hhhHHHHHHhhccccCCCCC--chhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 9999988865 24 3445567888999999999999999999999553
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.71 E-value=4.3 Score=38.33 Aligned_cols=53 Identities=13% Similarity=0.048 Sum_probs=30.5
Q ss_pred HHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHH
Q 013299 168 SFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRT 220 (446)
Q Consensus 168 g~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~ 220 (446)
+..+...|.+.+|++..+++++++|=+...|..|-.+|...|+--+|...|++
T Consensus 286 a~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyer 338 (361)
T COG3947 286 ARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYER 338 (361)
T ss_pred HHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHH
Confidence 44455555666666666666666666655555555555555655555555544
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.38 E-value=4.3 Score=38.31 Aligned_cols=57 Identities=18% Similarity=-0.007 Sum_probs=47.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 013299 321 YRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAA 378 (446)
Q Consensus 321 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~a 378 (446)
...+..|...|.+.+|+++.+++++++|-+ .+.|..+-.++...|+--+|...|++-
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~-e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLS-EQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhh-hHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 455667788899999999999999999988 488999999999999877777776654
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=83.19 E-value=25 Score=29.15 Aligned_cols=47 Identities=15% Similarity=-0.022 Sum_probs=32.7
Q ss_pred HhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHH
Q 013299 172 SIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLR 219 (446)
Q Consensus 172 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~ 219 (446)
...+.+...+..++.++..++.++..+..+..+|...+ ..+.+..++
T Consensus 18 ~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~ 64 (140)
T smart00299 18 EKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLD 64 (140)
T ss_pred HhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHH
Confidence 34567788888888888887777888888888877543 344445544
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=83.07 E-value=4.5 Score=27.00 Aligned_cols=39 Identities=23% Similarity=0.281 Sum_probs=29.7
Q ss_pred cHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChH
Q 013299 194 RKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLP 232 (446)
Q Consensus 194 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~ 232 (446)
+...|..+-..+.+.|++++|.+.|++..+....|+...
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~T 40 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYT 40 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHH
Confidence 455777888888889999999999988885456776543
|
|
| >smart00386 HAT HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Probab=82.37 E-value=1.7 Score=25.56 Aligned_cols=28 Identities=18% Similarity=0.083 Sum_probs=16.8
Q ss_pred CHHHHHHHHHhhCCCCCCcHHHHHHHHH
Q 013299 176 DLSSLATQIEELLPGIINRKERYHILAL 203 (446)
Q Consensus 176 ~~~~A~~~~~~al~~~p~~~~~~~~lg~ 203 (446)
+.+.+...|++++...|.+++.|..++.
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 4555666666666666666666655543
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. |
| >KOG2422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.37 E-value=67 Score=33.49 Aligned_cols=34 Identities=15% Similarity=0.046 Sum_probs=28.4
Q ss_pred CCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHh
Q 013299 189 PGIINRKERYHILALCYYGAGEDLVALNLLRTLL 222 (446)
Q Consensus 189 ~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al 222 (446)
.-+|-+.+...+++.+...+|+.+-|-..++++|
T Consensus 278 ~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~L 311 (665)
T KOG2422|consen 278 ISSPYHVDSLLQVADIFRFQGDREMAADLIERGL 311 (665)
T ss_pred ccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 3468888899999999999999988888877776
|
|
| >PRK12798 chemotaxis protein; Reviewed | Back alignment and domain information |
|---|
Probab=82.16 E-value=58 Score=32.61 Aligned_cols=58 Identities=21% Similarity=0.187 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHH
Q 013299 319 ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN---LKGWLLMARILSAQKRYEDAETILN 376 (446)
Q Consensus 319 a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~---~~~~~~la~~~~~~g~~~eA~~~~~ 376 (446)
+|..++..-...|+.+-|.-.-.+|+.+.+... ..+....+....-..++++|+..+.
T Consensus 259 lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~ 319 (421)
T PRK12798 259 LYLRIARAALIDGKTELARFASERALKLADPDSADAARARLYRGAALVASDDAESALEELS 319 (421)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHh
Confidence 444455555556666666666666666543211 1223333333333444555554444
|
|
| >PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=81.87 E-value=16 Score=32.49 Aligned_cols=47 Identities=9% Similarity=-0.045 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Q 013299 370 DAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQ 419 (446)
Q Consensus 370 eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~ 419 (446)
..+++.++.+...| ++..+.+++.++...|+.++|....+++..+.|
T Consensus 129 ~~~~~a~~~l~~~P---~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 129 AYIEWAERLLRRRP---DPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHhCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 33444555555555 445555555556666666666555555555555
|
This domain is found in bacteria. This presumed domain is about 200 amino acids in length. |
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=80.46 E-value=2.8 Score=27.61 Aligned_cols=24 Identities=29% Similarity=0.249 Sum_probs=22.2
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHh
Q 013299 199 HILALCYYGAGEDLVALNLLRTLL 222 (446)
Q Consensus 199 ~~lg~~~~~~g~~~eA~~~~~~al 222 (446)
+.||.+|+.+|+++.|...+++++
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHH
Confidence 678999999999999999999999
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [] | Back alignment and domain information |
|---|
Probab=80.01 E-value=9.6 Score=38.14 Aligned_cols=57 Identities=14% Similarity=0.110 Sum_probs=46.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhC--------CCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHh
Q 013299 166 HLSFAFSIAGDLSSLATQIEELL--------PGIINRKERYHILALCYYGAGEDLVALNLLRTLL 222 (446)
Q Consensus 166 ~lg~~l~~~~~~~~A~~~~~~al--------~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al 222 (446)
.|.++++..|+|..|+..++-.= ...+-+...+|..|.+|+-++||.+|+..|...|
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45578888999999998876431 1224456789999999999999999999999998
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.9 bits (139), Expect = 4e-09
Identities = 74/475 (15%), Positives = 140/475 (29%), Gaps = 149/475 (31%)
Query: 60 ETLNRAVELLPELWKLADAPR-ETIMSYRRALL---P-----------C--WNLDAET-- 100
+ L ++ + + R + + R+ALL P + +
Sbjct: 117 DRLYNDNQVFAKY----NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL 172
Query: 101 TAKLQK--EFAIFLLYCGGETCP---------------PNLRSQMGSSFVPRNNIEEAIL 143
+ K+Q +F IF L P PN S+ S + I
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232
Query: 144 LLMILLRKVALKR-------IEWDPSILDHLSFAFSIAGDLSS--LATQIEELLPGIINR 194
L LL+ + + + + AF +LS L T + + ++
Sbjct: 233 ELRRLLKSKPYENCLLVLLNV-QNAKAWN----AF----NLSCKILLTTRFKQVTDFLSA 283
Query: 195 KERYHI-LALCYYGAGEDLVALNLLRTLLSGSEDPKCLPA-------LLIASKICGEYPD 246
HI L D +LL L P+ LP ++ I E
Sbjct: 284 ATTTHISLDHHSMTLTPDE-VKSLLLKYL--DCRPQDLPREVLTTNPRRLS--IIAES-- 336
Query: 247 LAEEGATFASRALECLGD-----GCDQMESTANCLLGISLSAQS---------KVAITDF 292
+ + AT+ D CD++ + + SL+ ++++ F
Sbjct: 337 IRDGLATW---------DNWKHVNCDKLTTI----IESSLNVLEPAEYRKMFDRLSV--F 381
Query: 293 DRATR-QAKALQAL-VSAARSTNMRDLSILYRLSLEYAEQRKLNAAHY----YAKMLLKL 346
+ L + +S M ++ L++ SL E++ + Y ++ +KL
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL--VEKQPKESTISIPSIYLELKVKL 439
Query: 347 EGGSNLKGWLLMARIL---SAQKRYEDAETILNAA-----------LDQTGKWEQGELLR 392
E L I+ + K ++ + I L E+ L R
Sbjct: 440 ENEYALH-----RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR 494
Query: 393 T--------KAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKVYFMRK 439
+ K++ A + + L +FYK Y
Sbjct: 495 MVFLDFRFLEQKIRHD-STAWNASGSILNTL-----------QQLKFYKPYICDN 537
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 51.1 bits (122), Expect = 3e-07
Identities = 43/301 (14%), Positives = 81/301 (26%), Gaps = 25/301 (8%)
Query: 135 RNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLS------SLATQIEELL 188
N +EA L + L ++ L G+L+ Q+
Sbjct: 27 DGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH 86
Query: 189 PGIINRKERYHILALCYYGAGEDLVALNLLRTLL------SGSEDPKCLPALLIASKICG 242
+ + G A + P + I +++
Sbjct: 87 DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLW 146
Query: 243 EYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKAL 302
+ L +E A +E L Q + +L A+ D D A Q L
Sbjct: 147 AWARL-DEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARG-----DLDNARSQLNRL 200
Query: 303 QALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN---LKGWLLMA 359
+ L+ + + + + + AA + + K E +N W +A
Sbjct: 201 ENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 260
Query: 360 RILSAQKRYEDAETILNAALDQT----GKWEQGELLRTKAKVQLVQGQLKGAVETYTHLL 415
R +E AE +L + + L ++ G+ A L
Sbjct: 261 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320
Query: 416 A 416
Sbjct: 321 K 321
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 2e-06
Identities = 43/217 (19%), Positives = 65/217 (29%), Gaps = 35/217 (16%)
Query: 198 YHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPD-LAEEGATFAS 256
LA Y G+ A LL + C ++ L G T
Sbjct: 120 AFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPF 179
Query: 257 RALECLG------DGCDQMESTANCLLGISLSAQSKV--AITDFDRATRQ----AKALQA 304
R E DG ++E++ L G + S A + A +A
Sbjct: 180 RKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQ 239
Query: 305 LVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKG---------- 354
LVS T + ++ L L Y+ K +AA + +LKL S+
Sbjct: 240 LVSNHLLTADEEWDLV--LKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSS 297
Query: 355 ----------WLLMARILSAQKRYEDAETILNAALDQ 381
L A L + R+ D I L+
Sbjct: 298 INGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEI 334
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 45.1 bits (106), Expect = 2e-05
Identities = 44/236 (18%), Positives = 73/236 (30%), Gaps = 24/236 (10%)
Query: 184 IEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGE 243
++E+ P + + A + L +S S D LL+A+ I
Sbjct: 54 LDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFY 113
Query: 244 YPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQ 303
+ AL L G L ++++ Q + + D A ++ K +Q
Sbjct: 114 DQNPDA--------ALRTLHQGDS--------LECMAMTVQILLKLDRLDLARKELKKMQ 157
Query: 304 ALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILS 363
A T + + KL A+Y + + L A
Sbjct: 158 DQDEDATLTQLATAWVSLAA-----GGEKLQDAYYIFQEMADKCS-PTLLLLNGQAACHM 211
Query: 364 AQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQ 419
AQ R+E AE +L ALD+ E L + G+ Y L
Sbjct: 212 AQGRWEAAEGVLQEALDKDSG--HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 6e-04
Identities = 24/168 (14%), Positives = 52/168 (30%), Gaps = 16/168 (9%)
Query: 277 LGISLSAQSKV--AITDFDRATR-QAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKL 333
G L Q K+ A DF + + + + ++ ++ L +L
Sbjct: 100 RGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDY 159
Query: 334 NAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRT 393
AA + +L++ + + L A + A + L AA E
Sbjct: 160 TAAIAFLDKILEV-CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNT--EAFYK 216
Query: 394 KAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKVYFMRKRV 441
+ + G + ++ L+ D+ + + K+V
Sbjct: 217 ISTLYYQLGDHELSLSEVRE---CLK-------LDQDHKRCFAHYKQV 254
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 446 | |||
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 100.0 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 100.0 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 100.0 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 100.0 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 100.0 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 100.0 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.98 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.98 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.98 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.97 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.97 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.97 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.97 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.97 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.97 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.97 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.97 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.97 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.96 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.96 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.96 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.95 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.95 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.94 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.94 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.94 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.94 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.94 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.94 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.94 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.93 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.93 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.93 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.93 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.93 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.93 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.93 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.93 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.93 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.92 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.92 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.92 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.92 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.92 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.92 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.92 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.91 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.91 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.91 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.91 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.91 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.9 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.9 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.9 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.9 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.9 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.89 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.89 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.89 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.89 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.89 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.88 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.88 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.86 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.86 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.86 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.86 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.85 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.85 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.85 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.85 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.84 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.84 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.84 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.84 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.84 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.84 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.84 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.83 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.83 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.82 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.82 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.81 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.81 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.81 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.81 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.8 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.8 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.8 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.8 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.8 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.8 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.8 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.79 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.77 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.77 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.77 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.75 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.75 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.75 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.75 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.74 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.74 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.74 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.74 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.73 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.73 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.73 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.72 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.71 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.69 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.69 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.69 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.68 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.68 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.67 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.67 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.67 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.67 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.67 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.65 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.65 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.63 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.63 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.63 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.62 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.62 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.62 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.62 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.62 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.61 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.61 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.61 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.6 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.6 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.6 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.6 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.59 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.59 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.59 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.59 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.57 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.57 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.57 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.57 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.57 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.55 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.55 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.54 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.54 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.54 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.54 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.54 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.53 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.53 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.52 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.52 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.51 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.51 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.51 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.5 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.5 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.49 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.49 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.48 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.48 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.48 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.47 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.46 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.46 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.44 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.44 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.44 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.43 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.43 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.42 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.42 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.41 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 99.41 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.41 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.39 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 99.33 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.31 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 99.31 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 99.3 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.28 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.27 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 99.26 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.23 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 99.21 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 99.17 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 99.12 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 99.11 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 99.11 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 99.09 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.07 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 99.06 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 99.06 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 99.02 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 99.01 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.01 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 99.0 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.99 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.95 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.9 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 98.89 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.81 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 98.51 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 98.47 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.47 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.46 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 98.45 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 98.34 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 98.33 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 98.28 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 97.98 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 97.78 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 97.77 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 97.77 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 97.65 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 97.57 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 97.55 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 97.29 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 97.22 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 97.11 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 97.07 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 96.11 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 95.94 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 95.57 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 95.56 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 95.53 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 95.15 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 94.96 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 94.95 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 94.9 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 93.82 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 93.74 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 93.16 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 92.99 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 92.62 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 91.81 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 91.34 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 90.91 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 90.78 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 89.05 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 88.29 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 87.91 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 87.47 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 87.08 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 86.38 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 85.03 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 84.76 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 83.24 |
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-39 Score=320.14 Aligned_cols=351 Identities=17% Similarity=0.116 Sum_probs=291.0
Q ss_pred HHHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHh
Q 013299 11 EAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRAL 90 (446)
Q Consensus 11 ~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~al 90 (446)
.++...|.++...|++++|+..++++++. .|.. ..++..+|.++.+.|++++|+..|++++
T Consensus 34 ~~~~~l~~~~~~~~~~~~a~~~~~~a~~~--------~p~~-----------~~~~~~lg~~~~~~g~~~~A~~~~~~al 94 (388)
T 1w3b_A 34 GVLLLLSSIHFQCRRLDRSAHFSTLAIKQ--------NPLL-----------AEAYSNLGNVYKERGQLQEAIEHYRHAL 94 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCc-----------hHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34555666666666666666666666654 2332 2456667777777777777777777777
Q ss_pred CCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Q 013299 91 LPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFA 170 (446)
Q Consensus 91 ~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~ 170 (446)
+. +|++... ...++.. +...|++++|+..+ +.+++.+|+++.++..+|.+
T Consensus 95 ~~----~p~~~~~-~~~l~~~--------------------~~~~g~~~~A~~~~-----~~al~~~p~~~~~~~~l~~~ 144 (388)
T 1w3b_A 95 RL----KPDFIDG-YINLAAA--------------------LVAAGDMEGAVQAY-----VSALQYNPDLYCVRSDLGNL 144 (388)
T ss_dssp HH----CTTCHHH-HHHHHHH--------------------HHHHSCSSHHHHHH-----HHHHHHCTTCTHHHHHHHHH
T ss_pred Hc----CcchHHH-HHHHHHH--------------------HHHcCCHHHHHHHH-----HHHHHhCCCcHHHHHHHHHH
Confidence 76 4443221 2333333 33456788888876 55677889999999999999
Q ss_pred HHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHH
Q 013299 171 FSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEE 250 (446)
Q Consensus 171 l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~e 250 (446)
+...|++++|++.|++++..+|+++.+|+++|.++...|++++|+..|++++ .++|+++.++..+|.++ ...|++++
T Consensus 145 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al--~~~p~~~~~~~~lg~~~-~~~~~~~~ 221 (388)
T 1w3b_A 145 LKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAV--TLDPNFLDAYINLGNVL-KEARIFDR 221 (388)
T ss_dssp HHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHH-HTTTCTTH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--hcCCCcHHHHHHHHHHH-HHcCCHHH
Confidence 9999999999999999999999999999999999999999999999999999 89999999988887664 45789999
Q ss_pred HHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 013299 251 GATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQ 330 (446)
Q Consensus 251 A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~ 330 (446)
|+..++++++..|.+ ..++..+|.++... |++++|+..|++++ +++|+++.+++++|.++...
T Consensus 222 A~~~~~~al~~~p~~-----~~~~~~l~~~~~~~-----------g~~~~A~~~~~~al-~~~p~~~~~~~~l~~~~~~~ 284 (388)
T 1w3b_A 222 AVAAYLRALSLSPNH-----AVVHGNLACVYYEQ-----------GLIDLAIDTYRRAI-ELQPHFPDAYCNLANALKEK 284 (388)
T ss_dssp HHHHHHHHHHHCTTC-----HHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HTCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCcCC-----HHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-hhCCCCHHHHHHHHHHHHHc
Confidence 999999999965443 56888899988664 57899999999999 99999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHH
Q 013299 331 RKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVET 410 (446)
Q Consensus 331 ~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~ 410 (446)
|++++|+..|+++++++|++ ..+|..+|.++..+|++++|+..++++++.+| ++..+++.+|.++...|++++|+..
T Consensus 285 g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~ 361 (388)
T 1w3b_A 285 GSVAEAEDCYNTALRLCPTH-ADSLNNLANIKREQGNIEEAVRLYRKALEVFP--EFAAAHSNLASVLQQQGKLQEALMH 361 (388)
T ss_dssp SCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCT--TCHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCccc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999999999 59999999999999999999999999999999 8999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhccCCcchhhHHhhhhcccc
Q 013299 411 YTHLLAALQVQTKTFSSDKRFYKVYFMRKRVST 443 (446)
Q Consensus 411 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (446)
|++++++. |.+..+|++++.+..
T Consensus 362 ~~~a~~~~----------p~~~~a~~~lg~~~~ 384 (388)
T 1w3b_A 362 YKEAIRIS----------PTFADAYSNMGNTLK 384 (388)
T ss_dssp HHHHHTTC----------TTCHHHHHHHHHHHH
T ss_pred HHHHHhhC----------CCCHHHHHhHHHHHH
Confidence 99999875 667788888877653
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-39 Score=316.72 Aligned_cols=334 Identities=17% Similarity=0.079 Sum_probs=299.5
Q ss_pred HHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHhCCCC
Q 013299 15 LKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRALLPCW 94 (446)
Q Consensus 15 ~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~al~~~~ 94 (446)
..|..+...|++++|++.|.++++. .|++ ..++..+|.++.+.|++++|+..++++++.
T Consensus 4 ~~a~~~~~~g~~~~A~~~~~~~~~~--------~p~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~-- 62 (388)
T 1w3b_A 4 ELAHREYQAGDFEAAERHCMQLWRQ--------EPDN-----------TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ-- 62 (388)
T ss_dssp THHHHHHHHTCHHHHHHHHHHHHHH--------CTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred hHHHHHHHCCCHHHHHHHHHHHHHh--------CCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--
Confidence 4688899999999999999999987 4553 246778889999999999999999999998
Q ss_pred CCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhc
Q 013299 95 NLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIA 174 (446)
Q Consensus 95 ~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~ 174 (446)
+|.+.. ....++.. +...|++++|+..+ +.++...|+++.++..+|.++...
T Consensus 63 --~p~~~~-~~~~lg~~--------------------~~~~g~~~~A~~~~-----~~al~~~p~~~~~~~~l~~~~~~~ 114 (388)
T 1w3b_A 63 --NPLLAE-AYSNLGNV--------------------YKERGQLQEAIEHY-----RHALRLKPDFIDGYINLAAALVAA 114 (388)
T ss_dssp --CTTCHH-HHHHHHHH--------------------HHHHTCHHHHHHHH-----HHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred --CCCchH-HHHHHHHH--------------------HHHCCCHHHHHHHH-----HHHHHcCcchHHHHHHHHHHHHHc
Confidence 554432 23444443 33467899999986 556788899999999999999999
Q ss_pred CCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHH
Q 013299 175 GDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATF 254 (446)
Q Consensus 175 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~ 254 (446)
|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++ ..+|+++.++..+|.++ ...|++++|+.+
T Consensus 115 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al--~~~p~~~~~~~~l~~~~-~~~g~~~~A~~~ 191 (388)
T 1w3b_A 115 GDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI--ETQPNFAVAWSNLGCVF-NAQGEIWLAIHH 191 (388)
T ss_dssp SCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHH-HTTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH--HhCCCCHHHHHHHHHHH-HHcCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999 89999999998887664 557999999999
Q ss_pred HHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 013299 255 ASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLN 334 (446)
Q Consensus 255 ~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~ 334 (446)
|+++++..|.. ..++..+|.++... +++++|+..|++++ .++|+++.+++++|.++..+|+++
T Consensus 192 ~~~al~~~p~~-----~~~~~~lg~~~~~~-----------~~~~~A~~~~~~al-~~~p~~~~~~~~l~~~~~~~g~~~ 254 (388)
T 1w3b_A 192 FEKAVTLDPNF-----LDAYINLGNVLKEA-----------RIFDRAVAAYLRAL-SLSPNHAVVHGNLACVYYEQGLID 254 (388)
T ss_dssp HHHHHHHCTTC-----HHHHHHHHHHHHTT-----------TCTTHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhcCCCc-----HHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-hhCcCCHHHHHHHHHHHHHcCCHH
Confidence 99999965443 57899999998765 56899999999999 999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 013299 335 AAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHL 414 (446)
Q Consensus 335 ~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~ 414 (446)
+|+..|+++++++|++ ..+|.++|.++...|++++|+..++++++..| ++..++..+|.++...|++++|+..|+++
T Consensus 255 ~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 331 (388)
T 1w3b_A 255 LAIDTYRRAIELQPHF-PDAYCNLANALKEKGSVAEAEDCYNTALRLCP--THADSLNNLANIKREQGNIEEAVRLYRKA 331 (388)
T ss_dssp HHHHHHHHHHHTCSSC-HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc--ccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999999999 49999999999999999999999999999999 89999999999999999999999999999
Q ss_pred HHHHhh
Q 013299 415 LAALQV 420 (446)
Q Consensus 415 l~l~~~ 420 (446)
+++.|+
T Consensus 332 l~~~p~ 337 (388)
T 1w3b_A 332 LEVFPE 337 (388)
T ss_dssp TTSCTT
T ss_pred HhcCCC
Confidence 988654
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-35 Score=298.88 Aligned_cols=269 Identities=11% Similarity=0.043 Sum_probs=239.7
Q ss_pred CCCcHHHHHHHHHHHHH--HHHhhcC-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHH
Q 013299 134 PRNNIEEAILLLMILLR--KVALKRI-------EWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALC 204 (446)
Q Consensus 134 ~~~~~~eA~~~l~~~~~--~~~l~~~-------p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 204 (446)
..|++++|+..+..++. +..+... |.++.++..+|.++...|++++|+..|++++..+|+ +.+|+.+|.+
T Consensus 201 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~ 279 (514)
T 2gw1_A 201 SPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALI 279 (514)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHH
Confidence 47899999988733211 0001123 455779999999999999999999999999999999 9999999999
Q ss_pred HHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhh
Q 013299 205 YYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQ 284 (446)
Q Consensus 205 ~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~ 284 (446)
+...|++++|+..|++++ ..+|+++.++..++.++.. .|++++|+.+++++++..|.+ ..++..+|.++...
T Consensus 280 ~~~~~~~~~A~~~~~~~~--~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~ 351 (514)
T 2gw1_A 280 MADRNDSTEYYNYFDKAL--KLDSNNSSVYYHRGQMNFI-LQNYDQAGKDFDKAKELDPEN-----IFPYIQLACLAYRE 351 (514)
T ss_dssp HHTSSCCTTGGGHHHHHH--TTCTTCTHHHHHHHHHHHH-TTCTTHHHHHHHHHHHTCSSC-----SHHHHHHHHHTTTT
T ss_pred HHHCCCHHHHHHHHHHHh--hcCcCCHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHhChhh-----HHHHHHHHHHHHHc
Confidence 999999999999999999 8999999999888877655 789999999999999965443 46888999988765
Q ss_pred hhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHH------HHHHH
Q 013299 285 SKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLK------GWLLM 358 (446)
Q Consensus 285 ~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~------~~~~l 358 (446)
|++++|+..|++++ +.+|+++.+++.+|.++...|++++|+..|++++.++|+++ . +|..+
T Consensus 352 -----------~~~~~A~~~~~~~~-~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~l 418 (514)
T 2gw1_A 352 -----------NKFDDCETLFSEAK-RKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLD-GIYVGIAPLVGK 418 (514)
T ss_dssp -----------TCHHHHHHHHHHHH-HHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSS-SCSSCSHHHHHH
T ss_pred -----------CCHHHHHHHHHHHH-HHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc-hHHHHHHHHHHH
Confidence 56899999999999 99999999999999999999999999999999999999984 5 99999
Q ss_pred HHHHHH---ccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhcc
Q 013299 359 ARILSA---QKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFS 426 (446)
Q Consensus 359 a~~~~~---~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~~~ 426 (446)
|.++.. .|++++|+.+++++++.+| ++..+++.+|.++...|++++|+..|++++++.|++.+.+.
T Consensus 419 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 487 (514)
T 2gw1_A 419 ATLLTRNPTVENFIEATNLLEKASKLDP--RSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQ 487 (514)
T ss_dssp HHHHHTSCCTTHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHH
T ss_pred HHHHhhhhhcCCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHH
Confidence 999999 9999999999999999999 89999999999999999999999999999999987766543
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-34 Score=293.98 Aligned_cols=367 Identities=10% Similarity=0.030 Sum_probs=293.7
Q ss_pred HHHHHHHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHH
Q 013299 7 SLLLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSY 86 (446)
Q Consensus 7 ~~~~~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y 86 (446)
.-.+++++.+|.++...|++++|+..|+++++. .|.+ ..++..+|.+|...|++++|+..|
T Consensus 22 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~-----------~~~~~~la~~~~~~g~~~~A~~~~ 82 (537)
T 3fp2_A 22 QAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIEL--------DPNE-----------PVFYSNISACYISTGDLEKVIEFT 82 (537)
T ss_dssp HHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHH--------CTTC-----------HHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh--------CCCC-----------cHHHHHHHHHHHHcCCHHHHHHHH
Confidence 346889999999999999999999999999987 4543 257778889999999999999999
Q ss_pred HHHhCCCCCCChHHHHHHHHHHHHHHhhhcCC-----------CCCCccc------------------------------
Q 013299 87 RRALLPCWNLDAETTAKLQKEFAIFLLYCGGE-----------TCPPNLR------------------------------ 125 (446)
Q Consensus 87 ~~al~~~~~~~~~~~~~l~~~~a~~ll~~~~~-----------~~~~~~~------------------------------ 125 (446)
+++++. +|.+... ...++..+...+.. ..|....
T Consensus 83 ~~al~~----~p~~~~~-~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~ 157 (537)
T 3fp2_A 83 TKALEI----KPDHSKA-LLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRG 157 (537)
T ss_dssp HHHHHH----CTTCHHH-HHHHHHHHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHhc----CCchHHH-HHHHHHHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCcccc
Confidence 999998 5544322 12222222211110 0000000
Q ss_pred ----------------------------------------cccCcccc--------CCCcHHHHHHHHHHHHHHHHhhcC
Q 013299 126 ----------------------------------------SQMGSSFV--------PRNNIEEAILLLMILLRKVALKRI 157 (446)
Q Consensus 126 ----------------------------------------~~~~~~~~--------~~~~~~eA~~~l~~~~~~~~l~~~ 157 (446)
..+...+. ..+++++|+..+ +.++...
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~-----~~~l~~~ 232 (537)
T 3fp2_A 158 SQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMY-----HSLLSAN 232 (537)
T ss_dssp -CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHH-----HHHHC--
T ss_pred ccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH-----HHHHHHC
Confidence 00000000 012556666654 5677888
Q ss_pred CCCHH-------HHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCC
Q 013299 158 EWDPS-------ILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKC 230 (446)
Q Consensus 158 p~~~~-------~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~ 230 (446)
|++++ ++..+|.++...|++++|+..|++++..+|+ +.+|+.+|.++...|++++|+..|++++ ..+|++
T Consensus 233 p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~ 309 (537)
T 3fp2_A 233 TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAV--DLNPEY 309 (537)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHH--HHCTTC
T ss_pred CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHh--ccCCCC
Confidence 99876 5778889999999999999999999999999 9999999999999999999999999999 899999
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHH
Q 013299 231 LPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAAR 310 (446)
Q Consensus 231 ~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~ 310 (446)
+.++..+|.++.. .|++++|+..++++++..|.+ ..++..+|.++... |++++|+..|++++
T Consensus 310 ~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~~~~-----~~~~~~la~~~~~~-----------g~~~~A~~~~~~~~- 371 (537)
T 3fp2_A 310 PPTYYHRGQMYFI-LQDYKNAKEDFQKAQSLNPEN-----VYPYIQLACLLYKQ-----------GKFTESEAFFNETK- 371 (537)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTC-----SHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-
Confidence 9999988877654 789999999999999965544 46889999998665 57899999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC-----HHHHHHHHHHHHHc----------cCHHHHHHHH
Q 013299 311 STNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN-----LKGWLLMARILSAQ----------KRYEDAETIL 375 (446)
Q Consensus 311 ~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~-----~~~~~~la~~~~~~----------g~~~eA~~~~ 375 (446)
+.+|+++.+++.+|.++...|++++|+..|++++.++|+++ ...+..+|.++..+ |++++|+.++
T Consensus 372 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~ 451 (537)
T 3fp2_A 372 LKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLL 451 (537)
T ss_dssp HHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHH
T ss_pred HhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHH
Confidence 99999999999999999999999999999999999998763 12356678999999 9999999999
Q ss_pred HHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhc
Q 013299 376 NAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTF 425 (446)
Q Consensus 376 ~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~~ 425 (446)
+++++.+| ++..+++.+|.++..+|++++|++.|++++++.|...+..
T Consensus 452 ~~a~~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 499 (537)
T 3fp2_A 452 TKACELDP--RSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKL 499 (537)
T ss_dssp HHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHH
T ss_pred HHHHHhCC--CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHH
Confidence 99999999 8999999999999999999999999999999998766553
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-33 Score=271.00 Aligned_cols=306 Identities=12% Similarity=0.063 Sum_probs=170.6
Q ss_pred HHHHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHH
Q 013299 10 LEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRA 89 (446)
Q Consensus 10 ~~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~a 89 (446)
.+.++..|.++...|++++|+..|+++++. .|.+ ..++..+|.++...|++++|+..|+++
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--------~p~~-----------~~~~~~~a~~~~~~~~~~~A~~~~~~~ 63 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDG--------DPDN-----------YIAYYRRATVFLAMGKSKAALPDLTKV 63 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------Cccc-----------HHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 467778888888888888888888888876 3432 246667778888888888888888887
Q ss_pred hCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHH
Q 013299 90 LLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSF 169 (446)
Q Consensus 90 l~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~ 169 (446)
++. + |+++.++..+|.
T Consensus 64 ~~~----~------------------------------------------------------------~~~~~~~~~l~~ 79 (359)
T 3ieg_A 64 IAL----K------------------------------------------------------------MDFTAARLQRGH 79 (359)
T ss_dssp HHH----C------------------------------------------------------------TTCHHHHHHHHH
T ss_pred HHh----C------------------------------------------------------------CCcchHHHHHHH
Confidence 776 3 333344444445
Q ss_pred HHHhcCCHHHHHHHHHhhCCCCC---CcHHHHHHH------------HHHHHHCCChHHHHHHHHHHhcCCCCCCChHHH
Q 013299 170 AFSIAGDLSSLATQIEELLPGII---NRKERYHIL------------ALCYYGAGEDLVALNLLRTLLSGSEDPKCLPAL 234 (446)
Q Consensus 170 ~l~~~~~~~~A~~~~~~al~~~p---~~~~~~~~l------------g~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~ 234 (446)
++...|++++|+..|+++++.+| +++.++..+ |.++...|++++|+..|++++ ..+|+++.++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~ 157 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKIL--EVCVWDAELR 157 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH--HhCCCchHHH
Confidence 55555555555555555555555 444444444 345555555555555555555 4555555544
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCC
Q 013299 235 LIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNM 314 (446)
Q Consensus 235 ~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P 314 (446)
..++.++.. .|++++|+..++++++..|.+ ..++..+|.++... |++++|+..|++++ +.+|
T Consensus 158 ~~~~~~~~~-~~~~~~A~~~~~~~~~~~~~~-----~~~~~~la~~~~~~-----------~~~~~A~~~~~~a~-~~~~ 219 (359)
T 3ieg_A 158 ELRAECFIK-EGEPRKAISDLKAASKLKSDN-----TEAFYKISTLYYQL-----------GDHELSLSEVRECL-KLDQ 219 (359)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHHTTCSCC-----HHHHHHHHHHHHHH-----------TCHHHHHHHHHHHH-HHCT
T ss_pred HHHHHHHHH-CCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-hhCc
Confidence 444443322 345555555555555532222 33444555544332 33455555555555 5555
Q ss_pred CCHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHhhcCCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHH
Q 013299 315 RDLSILY------------RLSLEYAEQRKLNAAHYYAKMLLKLEGGSNL---KGWLLMARILSAQKRYEDAETILNAAL 379 (446)
Q Consensus 315 ~~~~a~~------------~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~---~~~~~la~~~~~~g~~~eA~~~~~~al 379 (446)
+++.++. .+|.++...|++++|+..+++++..+|+++. .++..+|.++..+|++++|+.++++++
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 299 (359)
T 3ieg_A 220 DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVL 299 (359)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 5555433 2255555555555555555555555555420 123345555555555555555555555
Q ss_pred hhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Q 013299 380 DQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQV 420 (446)
Q Consensus 380 ~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~ 420 (446)
+.+| +++.+++.+|.++...|++++|+..|++++++.|+
T Consensus 300 ~~~~--~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~ 338 (359)
T 3ieg_A 300 QMEP--DNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN 338 (359)
T ss_dssp HHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HhCc--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 5555 55555555555555555555555555555555543
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-34 Score=290.58 Aligned_cols=371 Identities=15% Similarity=0.060 Sum_probs=276.9
Q ss_pred HHHHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCC-CCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHH
Q 013299 10 LEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEG-FPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRR 88 (446)
Q Consensus 10 ~~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~-~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~ 88 (446)
+..++..|.++..+|++++|++.|++++++..+..+.. +|. ...++..+|.+|..+|++++|+.+|++
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~-----------~~~~~~nla~~y~~~g~~~~A~~~~~k 119 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIR-----------SLVTWGNYAWVYYHMGRLSDVQIYVDK 119 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTT-----------THHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchH-----------HHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 45677899999999999999999999999865433221 232 234667889999999999999999999
Q ss_pred HhCCCC----CCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHH
Q 013299 89 ALLPCW----NLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSIL 164 (446)
Q Consensus 89 al~~~~----~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~ 164 (446)
++++.+ ...+.. ..+....+..++. ...+++++|+..+ +.+++.+|++++++
T Consensus 120 a~~i~~~~~~~~~~~~-~~~~~~~g~~~~~------------------~~~~~y~~A~~~~-----~kal~~~p~~~~~~ 175 (472)
T 4g1t_A 120 VKHVCEKFSSPYRIES-PELDCEEGWTRLK------------------CGGNQNERAKVCF-----EKALEKKPKNPEFT 175 (472)
T ss_dssp HHHHHHHSCCSSCCCC-HHHHHHHHHHHHH------------------HCTTHHHHHHHHH-----HHHHHHSTTCHHHH
T ss_pred HHHHhHhcccccchhh-HHHHHHHHHHHHH------------------HccccHHHHHHHH-----HHHHHhCCCCHHHH
Confidence 998711 011111 1122333333222 2346799999986 66788899999999
Q ss_pred HHHHHHHH---hcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHC----CChHHHHHHHHHHhcCCCCCCChHHHHHH
Q 013299 165 DHLSFAFS---IAGDLSSLATQIEELLPGIINRKERYHILALCYYGA----GEDLVALNLLRTLLSGSEDPKCLPALLIA 237 (446)
Q Consensus 165 ~~lg~~l~---~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~----g~~~eA~~~~~~al~~~~~P~~~~a~~~~ 237 (446)
..+|.++. ..++.++|++.|+++++++|+++.++..+|..+... |++++|+..|++++ ..+|+++.++..+
T Consensus 176 ~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al--~~~~~~~~~~~~l 253 (472)
T 4g1t_A 176 SGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEAL--EKAPGVTDVLRSA 253 (472)
T ss_dssp HHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHH--HHCSSCHHHHHHH
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH--HhCccHHHHHHHH
Confidence 99998855 457889999999999999999999999999887664 67889999999999 8999999999988
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhc--------hHHHHHHHHHHHHHHHHHH
Q 013299 238 SKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAIT--------DFDRATRQAKALQALVSAA 309 (446)
Q Consensus 238 ~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~--------~~~~~~~~~eAl~~~~~al 309 (446)
|.++. ..|++++|+..++++++..|.+ +.++..+|.+|..++..... .....+.+++|+..|++++
T Consensus 254 g~~~~-~~~~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 327 (472)
T 4g1t_A 254 AKFYR-RKDEPDKAIELLKKALEYIPNN-----AYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKAD 327 (472)
T ss_dssp HHHHH-HTTCHHHHHHHHHHHHHHSTTC-----HHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HcCchHHHHHHHHHHHHhCCCh-----HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 77654 5799999999999999965543 67899999998766543211 1123466899999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCH--HHHHHHHHH-HHHccCHHHHHHHHHHHHhhcCC--
Q 013299 310 RSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNL--KGWLLMARI-LSAQKRYEDAETILNAALDQTGK-- 384 (446)
Q Consensus 310 ~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~--~~~~~la~~-~~~~g~~~eA~~~~~~al~~~p~-- 384 (446)
+++|+++.+++.+|.++...|++++|+.+|++++.++|++.. ..+..+|.+ +..+|++++|+..|+++++++|+
T Consensus 328 -~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~ 406 (472)
T 4g1t_A 328 -EANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSR 406 (472)
T ss_dssp -HHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCH
T ss_pred -hcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccH
Confidence 999999999999999999999999999999999999987521 235666655 45789999999999999876541
Q ss_pred --------------------CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhh
Q 013299 385 --------------------WEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKT 424 (446)
Q Consensus 385 --------------------~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~ 424 (446)
++++.+++++|.++..+|++++|+++|+++|++.|..+++
T Consensus 407 ~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a 466 (472)
T 4g1t_A 407 EKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSA 466 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-------------------
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcH
Confidence 0567789999999999999999999999999998766544
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-33 Score=280.89 Aligned_cols=342 Identities=15% Similarity=0.098 Sum_probs=291.5
Q ss_pred HHHHHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHH
Q 013299 9 LLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRR 88 (446)
Q Consensus 9 ~~~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~ 88 (446)
..+.++..|.++...|++++|+..|+++++. .|.+ ..++..+|.++...|++++|+..|++
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--------~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~ 85 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDG--------DPDN-----------YIAYYRRATVFLAMGKSKAALPDLTK 85 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCcc-----------HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3678999999999999999999999999986 3442 35778889999999999999999999
Q ss_pred HhCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHhhcCCCCH---HHHH
Q 013299 89 ALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDP---SILD 165 (446)
Q Consensus 89 al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~---~~~~ 165 (446)
+++. +|.+.. ....++.. +...|++++|+..+ +.++...|+++ .++.
T Consensus 86 al~~----~p~~~~-~~~~l~~~--------------------~~~~g~~~~A~~~~-----~~~~~~~~~~~~~~~~~~ 135 (450)
T 2y4t_A 86 VIQL----KMDFTA-ARLQRGHL--------------------LLKQGKLDEAEDDF-----KKVLKSNPSENEEKEAQS 135 (450)
T ss_dssp HHHH----CTTCHH-HHHHHHHH--------------------HHHTTCHHHHHHHH-----HHHHTSCCCHHHHHHHHH
T ss_pred HHhc----CCCcHH-HHHHHHHH--------------------HHHcCCHHHHHHHH-----HHHHhcCCCChhhHHHHH
Confidence 9998 554432 23344443 44578899999886 56678889988 7776
Q ss_pred HH------------HHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHH
Q 013299 166 HL------------SFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPA 233 (446)
Q Consensus 166 ~l------------g~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a 233 (446)
.+ |.++...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|++++ ..+|+++.+
T Consensus 136 ~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~ 213 (450)
T 2y4t_A 136 QLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAAS--KLKNDNTEA 213 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHH--HHHCSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHH--HhCCCCHHH
Confidence 55 6679999999999999999999999999999999999999999999999999999 899999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHh------------hchhHhhhhhhhchHHHHHHHHHH
Q 013299 234 LLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLL------------GISLSAQSKVAITDFDRATRQAKA 301 (446)
Q Consensus 234 ~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~l------------g~~~~~~~~~~~~~~~~~~~~~eA 301 (446)
+..++.++.. .|++++|+.+++++++..|.+ ..++..+ |.++.. .|++++|
T Consensus 214 ~~~l~~~~~~-~g~~~~A~~~~~~~~~~~p~~-----~~~~~~~~~~~~~~~~~~~~~~~~~-----------~g~~~~A 276 (450)
T 2y4t_A 214 FYKISTLYYQ-LGDHELSLSEVRECLKLDQDH-----KRCFAHYKQVKKLNKLIESAEELIR-----------DGRYTDA 276 (450)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHHHHHHHHHHHHH-----------HTCHHHH
T ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCh-----HHHHHHHHHHHHHHHHHHHHHHHHH-----------cCCHHHH
Confidence 9988877655 799999999999999965544 2333333 555543 4679999
Q ss_pred HHHHHHHHHhhCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 013299 302 LQALVSAARSTNMRDLS----ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNA 377 (446)
Q Consensus 302 l~~~~~al~~~~P~~~~----a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~ 377 (446)
+..|++++ +++|+++. +++.+|.++...|++++|+..+++++.++|++ ..+|..+|.++..+|++++|+.++++
T Consensus 277 ~~~~~~~l-~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~~l~~~~~~~~~~~~A~~~~~~ 354 (450)
T 2y4t_A 277 TSKYESVM-KTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDN-VNALKDRAEAYLIEEMYDEAIQDYET 354 (450)
T ss_dssp HHHHHHHH-HHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHH-hcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 99999999 99999965 78999999999999999999999999999999 59999999999999999999999999
Q ss_pred HHhhcCCCCcHHHHHHHHHH------------HHHhC-----CHHHHHHHHHH-HHHHHhhhh
Q 013299 378 ALDQTGKWEQGELLRTKAKV------------QLVQG-----QLKGAVETYTH-LLAALQVQT 422 (446)
Q Consensus 378 al~~~p~~~~~~~~~~~a~~------------~~~~g-----~~~eA~~~~~~-~l~l~~~~~ 422 (446)
+++++| ++..++..++.+ +...| +.+++.+.|++ +++..|+..
T Consensus 355 al~~~p--~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~ 415 (450)
T 2y4t_A 355 AQEHNE--NDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNF 415 (450)
T ss_dssp HHTTSS--SCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGC
T ss_pred HHHhCc--chHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCC
Confidence 999999 899999999955 33445 66788999997 777777654
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-33 Score=291.03 Aligned_cols=364 Identities=14% Similarity=0.048 Sum_probs=305.3
Q ss_pred HHHHHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHH---------------------------HH
Q 013299 9 LLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQ---------------------------ET 61 (446)
Q Consensus 9 ~~~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~---------------------------~~ 61 (446)
...+|+.+|.++.+.|++++|++.|+++++. .|........+. ..
T Consensus 199 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 270 (597)
T 2xpi_A 199 EASMCYLRGQVYTNLSNFDRAKECYKEALMV--------DAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAF 270 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHH
Confidence 4678999999999999999999999999986 333221100000 00
Q ss_pred HHHHHHHhHHHHHHhCChHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHH
Q 013299 62 LNRAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEA 141 (446)
Q Consensus 62 ~~~a~~~l~~~~~~~g~~~eA~~~y~~al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA 141 (446)
....+..++..|.+.|++++|+..|+++++.+ .++. ....++. .+...|++++|
T Consensus 271 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~----~~~~l~~--------------------~~~~~g~~~~A 324 (597)
T 2xpi_A 271 LRSLYMLKLNKTSHEDELRRAEDYLSSINGLE--KSSD----LLLCKAD--------------------TLFVRSRFIDV 324 (597)
T ss_dssp HHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGG--GCHH----HHHHHHH--------------------HHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHhhcCC--chHH----HHHHHHH--------------------HHHHhcCHHHH
Confidence 01112223556778999999999999999862 1221 1233333 34457889999
Q ss_pred HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 013299 142 ILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTL 221 (446)
Q Consensus 142 ~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~a 221 (446)
+..+ +.++...|++..++..++.++...|++++|+..|++++..+|+++.+|+.+|.+|...|++++|+..|+++
T Consensus 325 ~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 399 (597)
T 2xpi_A 325 LAIT-----TKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKS 399 (597)
T ss_dssp HHHH-----HHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHH-----HHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 9986 55677889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHH
Q 013299 222 LSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKA 301 (446)
Q Consensus 222 l~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA 301 (446)
+ ..+|+++.++..++.++.. .|++++|+..|+++++..|++ ..++..+|.+|... |++++|
T Consensus 400 ~--~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~-----------g~~~~A 460 (597)
T 2xpi_A 400 S--TMDPQFGPAWIGFAHSFAI-EGEHDQAISAYTTAARLFQGT-----HLPYLFLGMQHMQL-----------GNILLA 460 (597)
T ss_dssp H--HHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHTTTTC-----SHHHHHHHHHHHHH-----------TCHHHH
T ss_pred H--HhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCccc-----hHHHHHHHHHHHHc-----------CCHHHH
Confidence 9 8999999999988877554 799999999999999965443 56888999988654 578999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------cCCCCHHHHHHHHHHHHHccCHHHHHHHH
Q 013299 302 LQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKL------EGGSNLKGWLLMARILSAQKRYEDAETIL 375 (446)
Q Consensus 302 l~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l------~P~~~~~~~~~la~~~~~~g~~~eA~~~~ 375 (446)
+..|++++ +.+|+++.+++.+|.++...|++++|+..|++++.+ +|++...+|..+|.++...|++++|+.++
T Consensus 461 ~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~ 539 (597)
T 2xpi_A 461 NEYLQSSY-ALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDAL 539 (597)
T ss_dssp HHHHHHHH-HHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHH-HhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 99999999 999999999999999999999999999999999999 55531379999999999999999999999
Q ss_pred HHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhccCCcchhhHHhhhhcccc
Q 013299 376 NAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKVYFMRKRVST 443 (446)
Q Consensus 376 ~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (446)
+++++..| ++..++..+|.++...|++++|++.|++++++. |+...++.+.++++.
T Consensus 540 ~~~~~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~----------p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 540 NQGLLLST--NDANVHTAIALVYLHKKIPGLAITHLHESLAIS----------PNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHSS--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------TTCHHHHHHHHHTTC
T ss_pred HHHHHhCC--CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC----------CCChHHHHHHHHHHh
Confidence 99999999 899999999999999999999999999999996 555667777776654
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-32 Score=270.99 Aligned_cols=310 Identities=12% Similarity=0.057 Sum_probs=273.0
Q ss_pred HHHHHHHhHHHHHHhCChHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHH
Q 013299 62 LNRAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEA 141 (446)
Q Consensus 62 ~~~a~~~l~~~~~~~g~~~eA~~~y~~al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA 141 (446)
...++..+|..+.+.|++++|+..|+++++. +|.+.. ....++.. +...|++++|
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~----~p~~~~-~~~~l~~~--------------------~~~~g~~~~A 79 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDG----DPDNYI-AYYRRATV--------------------FLAMGKSKAA 79 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHH-HHHHHHHH--------------------HHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCccHH-HHHHHHHH--------------------HHHCCCHHHH
Confidence 3467788899999999999999999999998 554422 23344443 3446789999
Q ss_pred HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcH---HHHHHH------------HHHHH
Q 013299 142 ILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRK---ERYHIL------------ALCYY 206 (446)
Q Consensus 142 ~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l------------g~~~~ 206 (446)
+..+ +.++...|+++.++..+|.++...|++++|+..|++++..+|+++ .+|..+ |.++.
T Consensus 80 ~~~~-----~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 154 (450)
T 2y4t_A 80 LPDL-----TKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAF 154 (450)
T ss_dssp HHHH-----HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-----HHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9886 566788899999999999999999999999999999999999999 887766 66699
Q ss_pred HCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhh
Q 013299 207 GAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSK 286 (446)
Q Consensus 207 ~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~ 286 (446)
..|++++|+..|++++ ..+|+++.++..++.++.. .|++++|+..++++++..|.+ ..++..+|.++...
T Consensus 155 ~~~~~~~A~~~~~~~~--~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~-- 224 (450)
T 2y4t_A 155 GSGDYTAAIAFLDKIL--EVCVWDAELRELRAECFIK-EGEPRKAISDLKAASKLKNDN-----TEAFYKISTLYYQL-- 224 (450)
T ss_dssp HHTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHH-TTCGGGGHHHHHHHHHHHCSC-----HHHHHHHHHHHHHT--
T ss_pred HcCCHHHHHHHHHHHH--HhCCCChHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHc--
Confidence 9999999999999999 8999999999988877554 789999999999999965544 57899999998665
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHhhcCCCC---
Q 013299 287 VAITDFDRATRQAKALQALVSAARSTNMRDLSILYRL------------SLEYAEQRKLNAAHYYAKMLLKLEGGSN--- 351 (446)
Q Consensus 287 ~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~l------------g~~~~~~~~~~~A~~~~~~al~l~P~~~--- 351 (446)
|++++|+..|++++ .++|+++.++..+ |.++...|++++|+..|++++.++|+++
T Consensus 225 ---------g~~~~A~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 294 (450)
T 2y4t_A 225 ---------GDHELSLSEVRECL-KLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYT 294 (450)
T ss_dssp ---------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHH
T ss_pred ---------CCHHHHHHHHHHHH-HhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHH
Confidence 57899999999999 9999999998777 9999999999999999999999999973
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhh
Q 013299 352 LKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTK 423 (446)
Q Consensus 352 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~ 423 (446)
..++..+|.++...|++++|+..++++++.+| +++.+|+.+|.++...|++++|+..|++++++.|++..
T Consensus 295 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 364 (450)
T 2y4t_A 295 VRSKERICHCFSKDEKPVEAIRVCSEVLQMEP--DNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQ 364 (450)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHH
Confidence 13788999999999999999999999999999 89999999999999999999999999999999876543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-33 Score=271.41 Aligned_cols=310 Identities=14% Similarity=0.056 Sum_probs=250.3
Q ss_pred HHHHhHHHHHHhCChHHHHH-HHHHHhCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHH
Q 013299 65 AVELLPELWKLADAPRETIM-SYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAIL 143 (446)
Q Consensus 65 a~~~l~~~~~~~g~~~eA~~-~y~~al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~ 143 (446)
.....+.++...|++++|+. .|++++...+. +|.........++. .+...|++++|+.
T Consensus 27 ~~~~~~~~~~~~~~~~~a~~~~~~~a~~~~~~-~~~~~~~~~~~~~~--------------------~~~~~g~~~~A~~ 85 (368)
T 1fch_A 27 MAKRDAEAHPWLSDYDDLTSATYDKGYQFEEE-NPLRDHPQPFEEGL--------------------RRLQEGDLPNAVL 85 (368)
T ss_dssp -------------------CHHHHCCCCCCSS-CTTTTCSSHHHHHH--------------------HHHHTTCHHHHHH
T ss_pred HHcCCchhhHHHHHHHHHHhhhhhHHHhcCCC-CcccchHHHHHHHH--------------------HHHHCCCHHHHHH
Confidence 33334456778899999999 99999988221 11000000122333 3445788999999
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhc
Q 013299 144 LLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLS 223 (446)
Q Consensus 144 ~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~ 223 (446)
.+ +.++...|.++.++..+|.++...|++++|+..|+++++++|+++.+|+.+|.++...|++++|+..|++++
T Consensus 86 ~~-----~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 159 (368)
T 1fch_A 86 LF-----EAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWL- 159 (368)
T ss_dssp HH-----HHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-
T ss_pred HH-----HHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-
Confidence 86 566788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChHHHHHH---------------HHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhh
Q 013299 224 GSEDPKCLPALLIA---------------SKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVA 288 (446)
Q Consensus 224 ~~~~P~~~~a~~~~---------------~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~ 288 (446)
..+|++..++... .+.++ ..|++++|+.+++++++..|... ...++..+|.++...
T Consensus 160 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~---~~~~~~~l~~~~~~~---- 230 (368)
T 1fch_A 160 -RYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSI---DPDVQCGLGVLFNLS---- 230 (368)
T ss_dssp -HTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSC---CHHHHHHHHHHHHHT----
T ss_pred -HhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcc---cHHHHHHHHHHHHHc----
Confidence 8999988766421 23334 57899999999999999655421 257889999998664
Q ss_pred hchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCH
Q 013299 289 ITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRY 368 (446)
Q Consensus 289 ~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~ 368 (446)
|++++|+..|++++ +++|+++.+++++|.++...|++++|+..|++++.++|++ ..+|..+|.++..+|++
T Consensus 231 -------g~~~~A~~~~~~al-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~l~~~~~~~g~~ 301 (368)
T 1fch_A 231 -------GEYDKAVDCFTAAL-SVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGY-IRSRYNLGISCINLGAH 301 (368)
T ss_dssp -------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCH
T ss_pred -------CCHHHHHHHHHHHH-HhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHCCCH
Confidence 57899999999999 9999999999999999999999999999999999999999 59999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCc-----------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhh
Q 013299 369 EDAETILNAALDQTGKWEQ-----------GELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQ 421 (446)
Q Consensus 369 ~eA~~~~~~al~~~p~~~~-----------~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~ 421 (446)
++|+.+++++++..| ++ ..+|..+|.++..+|++++|...++++++..++.
T Consensus 302 ~~A~~~~~~al~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~ 363 (368)
T 1fch_A 302 REAVEHFLEALNMQR--KSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTM 363 (368)
T ss_dssp HHHHHHHHHHHHHHH--TC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCC--CCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHHHHh
Confidence 999999999999999 66 8999999999999999999999999999987644
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-31 Score=279.76 Aligned_cols=373 Identities=12% Similarity=0.018 Sum_probs=305.5
Q ss_pred HHHHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHH
Q 013299 10 LEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRA 89 (446)
Q Consensus 10 ~~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~a 89 (446)
...|...+..+...|++++|+..|+++++.. |+. ..+..++.+|...|++++|+..|+++
T Consensus 84 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--------p~~------------~~~~~l~~~~~~~g~~~~A~~~~~~~ 143 (597)
T 2xpi_A 84 EDYLRLWRHDALMQQQYKCAAFVGEKVLDIT--------GNP------------NDAFWLAQVYCCTGDYARAKCLLTKE 143 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------CCH------------HHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHccCchHHHHHHHHHHhhC--------CCc------------hHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 4567888999999999999999999999752 431 24566889999999999999999999
Q ss_pred hCCCCCCChHHHHHHHHHHHHHHhhhcCC---------CCCCc-------------------cc--cccCccccCCCcHH
Q 013299 90 LLPCWNLDAETTAKLQKEFAIFLLYCGGE---------TCPPN-------------------LR--SQMGSSFVPRNNIE 139 (446)
Q Consensus 90 l~~~~~~~~~~~~~l~~~~a~~ll~~~~~---------~~~~~-------------------~~--~~~~~~~~~~~~~~ 139 (446)
+..++ ++.. ...++..+...+.. ..|.. .. ..++..|...|+++
T Consensus 144 ~~~~~--~~~~----~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 217 (597)
T 2xpi_A 144 DLYNR--SSAC----RYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFD 217 (597)
T ss_dssp CGGGT--CHHH----HHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred hcccc--chhH----HHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHH
Confidence 77622 3321 22333333322211 01111 11 24456788899999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCHHHHHHHHH--------------------------------------HHHhcCCHHHHH
Q 013299 140 EAILLLMILLRKVALKRIEWDPSILDHLSF--------------------------------------AFSIAGDLSSLA 181 (446)
Q Consensus 140 eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~--------------------------------------~l~~~~~~~~A~ 181 (446)
+|+..+ +.++...|+++.++..++. .+.+.|++++|+
T Consensus 218 ~A~~~~-----~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 292 (597)
T 2xpi_A 218 RAKECY-----KEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAE 292 (597)
T ss_dssp HHHHHH-----HHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHH
T ss_pred HHHHHH-----HHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHH
Confidence 999986 5566788999988877654 344678999999
Q ss_pred HHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 013299 182 TQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALEC 261 (446)
Q Consensus 182 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~ 261 (446)
+.|++++.. |.++.+|+.+|.++...|++++|+..|++++ ..+|++..++..++.++. ..|++++|+..++++++.
T Consensus 293 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~ 368 (597)
T 2xpi_A 293 DYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKIL--EIDPYNLDVYPLHLASLH-ESGEKNKLYLISNDLVDR 368 (597)
T ss_dssp HHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCCTTHHHHHHHHH-HHTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HcCcccHHHHHHHHHHHH-HhCCHHHHHHHHHHHHhh
Confidence 999999988 8899999999999999999999999999999 889999988887777655 478999999999999986
Q ss_pred cCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013299 262 LGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAK 341 (446)
Q Consensus 262 ~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~ 341 (446)
.|++ ..++..+|.+|... |++++|+..|++++ +++|+++.+|+.+|.++...|++++|+..|+
T Consensus 369 ~~~~-----~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 431 (597)
T 2xpi_A 369 HPEK-----AVTWLAVGIYYLCV-----------NKISEARRYFSKSS-TMDPQFGPAWIGFAHSFAIEGEHDQAISAYT 431 (597)
T ss_dssp CTTS-----HHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred Cccc-----HHHHHHHHHHHHHh-----------ccHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5443 57888899988665 57899999999999 9999999999999999999999999999999
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhh
Q 013299 342 MLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQ 421 (446)
Q Consensus 342 ~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~ 421 (446)
+++.++|++. .+|..+|.++...|++++|+.+|+++++..| +++.++..+|.++...|++++|++.|++++++.|+.
T Consensus 432 ~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 508 (597)
T 2xpi_A 432 TAARLFQGTH-LPYLFLGMQHMQLGNILLANEYLQSSYALFQ--YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKT 508 (597)
T ss_dssp HHHHTTTTCS-HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHhCccch-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcc
Confidence 9999999995 9999999999999999999999999999999 899999999999999999999999999999997642
Q ss_pred hhhccCCcch-hhHHhhhhcc
Q 013299 422 TKTFSSDKRF-YKVYFMRKRV 441 (446)
Q Consensus 422 ~~~~~~~~~~-~~~~~~~~~~ 441 (446)
+.+|.. ..+|+....+
T Consensus 509 ----~~~p~~~~~~~~~l~~~ 525 (597)
T 2xpi_A 509 ----QSNEKPWAATWANLGHA 525 (597)
T ss_dssp ----CCCSGGGHHHHHHHHHH
T ss_pred ----ccchhhHHHHHHHHHHH
Confidence 334442 4555555444
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-31 Score=253.59 Aligned_cols=288 Identities=13% Similarity=0.024 Sum_probs=247.3
Q ss_pred HHHhHHHHHHhCChHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHH
Q 013299 66 VELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLL 145 (446)
Q Consensus 66 ~~~l~~~~~~~g~~~eA~~~y~~al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l 145 (446)
+..++..+...|++++|+..|+++++. +|.+... ...++.. +...|++++|+..+
T Consensus 25 ~~~~a~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~-~~~~~~~--------------------~~~~~~~~~A~~~~ 79 (330)
T 3hym_B 25 VVSLAERHYYNCDFKMCYKLTSVVMEK----DPFHASC-LPVHIGT--------------------LVELNKANELFYLS 79 (330)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCTTT-HHHHHHH--------------------HHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCChhh-HHHHHHH--------------------HHHhhhHHHHHHHH
Confidence 445567888899999999999999988 4433211 1222222 22356788998876
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcC
Q 013299 146 MILLRKVALKRIEWDPSILDHLSFAFSIAG-DLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSG 224 (446)
Q Consensus 146 ~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~ 224 (446)
+.++...|+++.++..+|.++...| ++++|+..|++++..+|+++.+|+.+|.++...|++++|+..|++++
T Consensus 80 -----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~-- 152 (330)
T 3hym_B 80 -----HKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAA-- 152 (330)
T ss_dssp -----HHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHH--
T ss_pred -----HHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHH--
Confidence 5567788999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHH
Q 013299 225 SEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQA 304 (446)
Q Consensus 225 ~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~ 304 (446)
..+|++..++..++.++.. .|++++|+.+++++++..|.+ ..++..+|.++... |++++|+..
T Consensus 153 ~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~~~~-----~~~~~~l~~~~~~~-----------~~~~~A~~~ 215 (330)
T 3hym_B 153 QLMKGCHLPMLYIGLEYGL-TNNSKLAERFFSQALSIAPED-----PFVMHEVGVVAFQN-----------GEWKTAEKW 215 (330)
T ss_dssp HHTTTCSHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCTTC-----HHHHHHHHHHHHHT-----------TCHHHHHHH
T ss_pred HhccccHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhCCCC-----hHHHHHHHHHHHHc-----------ccHHHHHHH
Confidence 8999999988888776554 789999999999999965443 57889999998664 578999999
Q ss_pred HHHHHHhhC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHH
Q 013299 305 LVSAARSTN---------MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETIL 375 (446)
Q Consensus 305 ~~~al~~~~---------P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~ 375 (446)
|++++ ++. |.++.+++++|.++...|++++|+..|++++.++|+++ .+|..+|.++..+|++++|+.++
T Consensus 216 ~~~a~-~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~ 293 (330)
T 3hym_B 216 FLDAL-EKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNA-STYSAIGYIHSLMGNFENAVDYF 293 (330)
T ss_dssp HHHHH-HHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCS-HHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHH-HHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccch-HHHHHHHHHHHHhccHHHHHHHH
Confidence 99999 887 78889999999999999999999999999999999995 99999999999999999999999
Q ss_pred HHHHhhcCCCCcHHHHHHHHHHH-HHhCCHHH
Q 013299 376 NAALDQTGKWEQGELLRTKAKVQ-LVQGQLKG 406 (446)
Q Consensus 376 ~~al~~~p~~~~~~~~~~~a~~~-~~~g~~~e 406 (446)
+++++.+| ++..++..++.++ ...|+.+.
T Consensus 294 ~~al~~~p--~~~~~~~~l~~~~~~~~g~~~a 323 (330)
T 3hym_B 294 HTALGLRR--DDTFSVTMLGHCIEMYIGDSEA 323 (330)
T ss_dssp HTTTTTCS--CCHHHHHHHHHHHHTTTTC---
T ss_pred HHHHccCC--CchHHHHHHHHHHHHHhCchhc
Confidence 99999999 8999999999988 56666543
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.1e-30 Score=250.98 Aligned_cols=273 Identities=11% Similarity=0.034 Sum_probs=247.0
Q ss_pred cccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCC-
Q 013299 131 SFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAG- 209 (446)
Q Consensus 131 ~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g- 209 (446)
.+...|++++|+..+ +.++...|.++.++..++.++...|++++|+..++++++.+|+++.+|+.+|.++...|
T Consensus 31 ~~~~~g~~~~A~~~~-----~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 105 (330)
T 3hym_B 31 RHYYNCDFKMCYKLT-----SVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGH 105 (330)
T ss_dssp HHHHTTCHHHHHHHH-----HHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCS
T ss_pred HHHHcCCHHHHHHHH-----HHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhh
Confidence 344568999999886 56778899999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhh
Q 013299 210 EDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAI 289 (446)
Q Consensus 210 ~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~ 289 (446)
++++|+..|++++ ..+|+++.++..+|.++.. .|++++|+..++++++..|.+ ..++..+|.++...
T Consensus 106 ~~~~A~~~~~~a~--~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~~~~-----~~~~~~l~~~~~~~----- 172 (330)
T 3hym_B 106 KNEHARRYLSKAT--TLEKTYGPAWIAYGHSFAV-ESEHDQAMAAYFTAAQLMKGC-----HLPMLYIGLEYGLT----- 172 (330)
T ss_dssp CHHHHHHHHHHHH--TTCTTCTHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHTTTC-----SHHHHHHHHHHHHT-----
T ss_pred hHHHHHHHHHHHH--HhCCccHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcccc-----HHHHHHHHHHHHHH-----
Confidence 9999999999999 8999999999988877554 789999999999999976554 46788899988664
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc---------CCCCHHHHHHHHH
Q 013299 290 TDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLE---------GGSNLKGWLLMAR 360 (446)
Q Consensus 290 ~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~---------P~~~~~~~~~la~ 360 (446)
|++++|+..|++++ +.+|+++.+++.+|.++...|++++|+..+++++.+. |..+ .+|..+|.
T Consensus 173 ------~~~~~A~~~~~~al-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~la~ 244 (330)
T 3hym_B 173 ------NNSKLAERFFSQAL-SIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWE-PLLNNLGH 244 (330)
T ss_dssp ------TCHHHHHHHHHHHH-TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCC-HHHHHHHH
T ss_pred ------hhHHHHHHHHHHHH-HhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHH-HHHHHHHH
Confidence 57899999999999 9999999999999999999999999999999999997 6664 89999999
Q ss_pred HHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhccCCcchhhHHhhhhc
Q 013299 361 ILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKVYFMRKR 440 (446)
Q Consensus 361 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 440 (446)
++..+|++++|+.+++++++.+| ++..+++.+|.++..+|++++|++.|++++++.| ....++..+++
T Consensus 245 ~~~~~g~~~~A~~~~~~a~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p----------~~~~~~~~l~~ 312 (330)
T 3hym_B 245 VCRKLKKYAEALDYHRQALVLIP--QNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR----------DDTFSVTMLGH 312 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST--TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS----------CCHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhhCc--cchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC----------CchHHHHHHHH
Confidence 99999999999999999999999 8999999999999999999999999999999864 44455555554
Q ss_pred c
Q 013299 441 V 441 (446)
Q Consensus 441 ~ 441 (446)
+
T Consensus 313 ~ 313 (330)
T 3hym_B 313 C 313 (330)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.98 E-value=6.7e-29 Score=240.93 Aligned_cols=311 Identities=14% Similarity=0.104 Sum_probs=210.5
Q ss_pred HHHHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHH
Q 013299 10 LEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRA 89 (446)
Q Consensus 10 ~~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~a 89 (446)
.++++.+|.++..+|++++|+..|+++++. .|.. ..++..+|.++...|++++|+..|+++
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~~ 97 (359)
T 3ieg_A 37 YIAYYRRATVFLAMGKSKAALPDLTKVIAL--------KMDF-----------TAARLQRGHLLLKQGKLDEAEDDFKKV 97 (359)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCc-----------chHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 568999999999999999999999999987 3442 257788999999999999999999999
Q ss_pred hCCCCCCCh---HHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHH
Q 013299 90 LLPCWNLDA---ETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDH 166 (446)
Q Consensus 90 l~~~~~~~~---~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~ 166 (446)
++. +| .+... ...++....... ....+..+...|++++|+..+ +.++...|.++.++..
T Consensus 98 ~~~----~~~~~~~~~~-~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~A~~~~-----~~~~~~~~~~~~~~~~ 159 (359)
T 3ieg_A 98 LKS----NPSEQEEKEA-ESQLVKADEMQR--------LRSQALDAFDGADYTAAITFL-----DKILEVCVWDAELREL 159 (359)
T ss_dssp HTS----CCCHHHHHHH-HHHHHHHHHHHH--------HHHHHHHHHHTTCHHHHHHHH-----HHHHHHCTTCHHHHHH
T ss_pred Hhc----CCcccChHHH-HHHHHHHHHHHH--------HHHHHHHHHHccCHHHHHHHH-----HHHHHhCCCchHHHHH
Confidence 998 66 44321 111111000000 000011223344455554443 2333444555555555
Q ss_pred HHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCC
Q 013299 167 LSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPD 246 (446)
Q Consensus 167 lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~ 246 (446)
+|.++...|++++|+..|++++..+|+++.+|+.+|.++...|++++|+..|++++ ..+|+++.++.....+.
T Consensus 160 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~--~~~~~~~~~~~~~~~~~----- 232 (359)
T 3ieg_A 160 RAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECL--KLDQDHKRCFAHYKQVK----- 232 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHH-----
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--hhCccchHHHHHHHHHH-----
Confidence 55555555555555555555555555555555555555555555555555555555 44555444332211110
Q ss_pred CHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHH----HHHH
Q 013299 247 LAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLS----ILYR 322 (446)
Q Consensus 247 ~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~----a~~~ 322 (446)
.......+|.++.. .|++++|+..|++++ +.+|+++. ++..
T Consensus 233 -----------------------~~~~~~~~a~~~~~-----------~~~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~ 277 (359)
T 3ieg_A 233 -----------------------KLNKLIESAEELIR-----------DGRYTDATSKYESVM-KTEPSVAEYTVRSKER 277 (359)
T ss_dssp -----------------------HHHHHHHHHHHHHH-----------TTCHHHHHHHHHHHH-HHCCSSHHHHHHHHHH
T ss_pred -----------------------HHHHHHHHHHHHHH-----------cCCHHHHHHHHHHHH-hcCCCchHHHHHHHHH
Confidence 01123344555544 467899999999999 99999985 4667
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhC
Q 013299 323 LSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQG 402 (446)
Q Consensus 323 lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g 402 (446)
+|.++...|++++|+..|++++.++|++ ..+|..+|.++..+|++++|+.+|+++++.+| ++..++..++.+...++
T Consensus 278 la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 278 ICHCFSKDEKPVEAIRICSEVLQMEPDN-VNALKDRAEAYLIEEMYDEAIQDYEAAQEHNE--NDQQIREGLEKAQRLLK 354 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT--TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CChHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 59999999999999999999999999999999 88998888888776554
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.5e-29 Score=258.50 Aligned_cols=238 Identities=13% Similarity=0.019 Sum_probs=217.2
Q ss_pred cCccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH
Q 013299 128 MGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYG 207 (446)
Q Consensus 128 ~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 207 (446)
++..+...|++++|+..+ +.++...|. +.++..+|.++...|++++|+..|++++..+|+++.+|+.+|.++..
T Consensus 243 ~~~~~~~~~~~~~A~~~~-----~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 316 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDI-----KKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFI 316 (514)
T ss_dssp HHHHHHHSSCHHHHHHHH-----HHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHH-----HHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHH
Confidence 345677889999999876 556778899 99999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhh
Q 013299 208 AGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKV 287 (446)
Q Consensus 208 ~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~ 287 (446)
.|++++|+..|++++ ..+|+++.++..++.++ ...|++++|+..++++++..|.+ ..++..+|.++...
T Consensus 317 ~~~~~~A~~~~~~~~--~~~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~la~~~~~~--- 385 (514)
T 2gw1_A 317 LQNYDQAGKDFDKAK--ELDPENIFPYIQLACLA-YRENKFDDCETLFSEAKRKFPEA-----PEVPNFFAEILTDK--- 385 (514)
T ss_dssp TTCTTHHHHHHHHHH--HTCSSCSHHHHHHHHHT-TTTTCHHHHHHHHHHHHHHSTTC-----SHHHHHHHHHHHHT---
T ss_pred hCCHHHHHHHHHHHH--HhChhhHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHcccC-----HHHHHHHHHHHHHC---
Confidence 999999999999999 89999999998887664 55799999999999999965544 46888999998665
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHH---cCCHHHHHHHHHHHHhhcCCCCHHHHHHH
Q 013299 288 AITDFDRATRQAKALQALVSAARSTNMRDLS------ILYRLSLEYAE---QRKLNAAHYYAKMLLKLEGGSNLKGWLLM 358 (446)
Q Consensus 288 ~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~------a~~~lg~~~~~---~~~~~~A~~~~~~al~l~P~~~~~~~~~l 358 (446)
|++++|+..|++++ +++|+++. +++.+|.++.. .|++++|+..|++++.++|++ ..+|..+
T Consensus 386 --------~~~~~A~~~~~~a~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~l 455 (514)
T 2gw1_A 386 --------NDFDKALKQYDLAI-ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRS-EQAKIGL 455 (514)
T ss_dssp --------TCHHHHHHHHHHHH-HHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTC-HHHHHHH
T ss_pred --------CCHHHHHHHHHHHH-HhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCccc-HHHHHHH
Confidence 57899999999999 99999966 99999999999 999999999999999999999 5999999
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHH
Q 013299 359 ARILSAQKRYEDAETILNAALDQTGKWEQGELLRTK 394 (446)
Q Consensus 359 a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~ 394 (446)
|.++..+|++++|+.+++++++.+| ++..++..+
T Consensus 456 a~~~~~~g~~~~A~~~~~~a~~~~~--~~~~~~~~~ 489 (514)
T 2gw1_A 456 AQMKLQQEDIDEAITLFEESADLAR--TMEEKLQAI 489 (514)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCS--SHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhcc--ccHHHHHHH
Confidence 9999999999999999999999999 888887765
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-31 Score=264.80 Aligned_cols=248 Identities=11% Similarity=0.044 Sum_probs=225.7
Q ss_pred hhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCC-hHHHHHHHHHHhcCCCCCCChH
Q 013299 154 LKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGE-DLVALNLLRTLLSGSEDPKCLP 232 (446)
Q Consensus 154 l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~eA~~~~~~al~~~~~P~~~~ 232 (446)
+..+|+++++|..+|.++...|++++|++.|++++.++|++..+|+++|.++..+|+ +++|+..|+++| .++|+++.
T Consensus 90 i~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al--~l~P~~~~ 167 (382)
T 2h6f_A 90 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAII--EEQPKNYQ 167 (382)
T ss_dssp ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH--HHCTTCHH
T ss_pred hhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHH--HHCCCCHH
Confidence 567799999999999999999999999999999999999999999999999999997 999999999999 89999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhh
Q 013299 233 ALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARST 312 (446)
Q Consensus 233 a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~ 312 (446)
+++.+|.++. ..|++++|+.+|+++|+..|.+ ..+|+++|.++... |++++|+.+|++++ ++
T Consensus 168 a~~~~g~~~~-~~g~~~eAl~~~~kal~ldP~~-----~~a~~~lg~~~~~~-----------g~~~eAl~~~~~al-~l 229 (382)
T 2h6f_A 168 VWHHRRVLVE-WLRDPSQELEFIADILNQDAKN-----YHAWQHRQWVIQEF-----------KLWDNELQYVDQLL-KE 229 (382)
T ss_dssp HHHHHHHHHH-HHTCCTTHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHH-----------TCCTTHHHHHHHHH-HH
T ss_pred HHHHHHHHHH-HccCHHHHHHHHHHHHHhCccC-----HHHHHHHHHHHHHc-----------CChHHHHHHHHHHH-Hh
Confidence 9999887755 4789999999999999965544 68999999999765 56899999999999 99
Q ss_pred CCCCHHHHHHHHHHHHH-cCCHHHH-----HHHHHHHHhhcCCCCHHHHHHHHHHHHHcc--CHHHHHHHHHHHHhhcCC
Q 013299 313 NMRDLSILYRLSLEYAE-QRKLNAA-----HYYAKMLLKLEGGSNLKGWLLMARILSAQK--RYEDAETILNAALDQTGK 384 (446)
Q Consensus 313 ~P~~~~a~~~lg~~~~~-~~~~~~A-----~~~~~~al~l~P~~~~~~~~~la~~~~~~g--~~~eA~~~~~~al~~~p~ 384 (446)
+|+++.+|+++|.++.. .|.+++| +.+|++|+.++|++ ..+|+++|.++..+| ++++|+..++++ +.+|
T Consensus 230 ~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~-~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p- 306 (382)
T 2h6f_A 230 DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHN-ESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSH- 306 (382)
T ss_dssp CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTC-
T ss_pred CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHccCccchHHHHHHHHHh-ccCC-
Confidence 99999999999999999 5665888 59999999999999 599999999999988 799999999998 8899
Q ss_pred CCcHHHHHHHHHHHHHhC---------CHHHHHHHHHHH-HHHHhhhhhhc
Q 013299 385 WEQGELLRTKAKVQLVQG---------QLKGAVETYTHL-LAALQVQTKTF 425 (446)
Q Consensus 385 ~~~~~~~~~~a~~~~~~g---------~~~eA~~~~~~~-l~l~~~~~~~~ 425 (446)
++..++..+|.++..+| .+++|++.|+++ ++++|...+.|
T Consensus 307 -~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w 356 (382)
T 2h6f_A 307 -SSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYW 356 (382)
T ss_dssp -CCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred -CCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHH
Confidence 89999999999999985 359999999999 89876555444
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.7e-30 Score=258.87 Aligned_cols=372 Identities=12% Similarity=0.014 Sum_probs=281.2
Q ss_pred HHhhhh--cccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHhCCC
Q 013299 16 KAKCLQ--GLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRALLPC 93 (446)
Q Consensus 16 ~g~~~~--~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~al~~~ 93 (446)
.-.|++ .+++.+.++..++..|...... .+... ....+..+|.++..+|++++|+..|++++++.
T Consensus 15 ~l~chf~w~l~~~~~~l~~~e~~~~~~~~~----~~~~~---------~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~ 81 (472)
T 4g1t_A 15 QLKCHFTWNLMEGENSLDDFEDKVFYRTEF----QNREF---------KATMCNLLAYLKHLKGQNEAALECLRKAEELI 81 (472)
T ss_dssp TSCSTTTSCTTTTCCCHHHHHHHHHHHTTS----CC------------CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhhChHHHhHHHHHHHHHHHHHHHHHHHHh----CCChh---------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 335665 5677777888777766542111 11111 12467789999999999999999999999861
Q ss_pred -----CCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHH--HHHh-hcCCCCHHHHH
Q 013299 94 -----WNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLR--KVAL-KRIEWDPSILD 165 (446)
Q Consensus 94 -----~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~--~~~l-~~~p~~~~~~~ 165 (446)
...+|.... ...++| .+|..+|++++|+..+..+.. .... ...+..+.++.
T Consensus 82 ~~~~~~~~~~~~~~-~~~nla--------------------~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~ 140 (472)
T 4g1t_A 82 QQEHADQAEIRSLV-TWGNYA--------------------WVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDC 140 (472)
T ss_dssp HHHSGGGCTTTTHH-HHHHHH--------------------HHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHH
T ss_pred HhcCccccchHHHH-HHHHHH--------------------HHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHH
Confidence 011221111 122233 345668899999988743311 1000 12346788999
Q ss_pred HHHHHHHhc--CCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH---CCChHHHHHHHHHHhcCCCCCCChHHHHHHHHH
Q 013299 166 HLSFAFSIA--GDLSSLATQIEELLPGIINRKERYHILALCYYG---AGEDLVALNLLRTLLSGSEDPKCLPALLIASKI 240 (446)
Q Consensus 166 ~lg~~l~~~--~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~---~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~ 240 (446)
.+|.++... +++++|+++|++++.++|++++++..+|.++.. .|++++|+..|++++ .++|+++.++..++..
T Consensus 141 ~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al--~l~p~~~~~~~~l~~~ 218 (472)
T 4g1t_A 141 EEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAI--RLNPDNQYLKVLLALK 218 (472)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHH--HHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHh--hcCCcchHHHHHHHHH
Confidence 999888765 479999999999999999999999999998654 578899999999999 8999999988766644
Q ss_pred H---hcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCH
Q 013299 241 C---GEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDL 317 (446)
Q Consensus 241 ~---~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~ 317 (446)
+ ....+++++|+.++++++...|.. ..++..+|.+|... |++++|+..|++++ +.+|+++
T Consensus 219 ~~~~~~~~~~~~~a~~~~~~al~~~~~~-----~~~~~~lg~~~~~~-----------~~~~~A~~~~~~al-~~~p~~~ 281 (472)
T 4g1t_A 219 LHKMREEGEEEGEGEKLVEEALEKAPGV-----TDVLRSAAKFYRRK-----------DEPDKAIELLKKAL-EYIPNNA 281 (472)
T ss_dssp HHHCC------CHHHHHHHHHHHHCSSC-----HHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHSTTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHhCccH-----HHHHHHHHHHHHHc-----------CchHHHHHHHHHHH-HhCCChH
Confidence 3 234567889999999999965543 57889999999765 57899999999999 9999999
Q ss_pred HHHHHHHHHHHHc-------------------CCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 013299 318 SILYRLSLEYAEQ-------------------RKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAA 378 (446)
Q Consensus 318 ~a~~~lg~~~~~~-------------------~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~a 378 (446)
.+++++|.+|..+ +.+++|+..|++++.++|++. .++..+|.++..+|++++|+.+|+++
T Consensus 282 ~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~lg~~~~~~~~~~~A~~~~~ka 360 (472)
T 4g1t_A 282 YLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLF-RVCSILASLHALADQYEEAEYYFQKE 360 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTC-CCHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchh-hhhhhHHHHHHHhccHHHHHHHHHHH
Confidence 9999999998643 457899999999999999995 99999999999999999999999999
Q ss_pred HhhcCCCCcH---HHHHHHHHH-HHHhCCHHHHHHHHHHHHHHHhhhhhh--------------ccCCcchhhHHhhhhc
Q 013299 379 LDQTGKWEQG---ELLRTKAKV-QLVQGQLKGAVETYTHLLAALQVQTKT--------------FSSDKRFYKVYFMRKR 440 (446)
Q Consensus 379 l~~~p~~~~~---~~~~~~a~~-~~~~g~~~eA~~~~~~~l~l~~~~~~~--------------~~~~~~~~~~~~~~~~ 440 (446)
++..| ++. .+++.+|.+ +...|++++|+..|++++++.|+.... ...+|+...+|++++.
T Consensus 361 L~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~ 438 (472)
T 4g1t_A 361 FSKEL--TPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAF 438 (472)
T ss_dssp HHSCC--CHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHH
T ss_pred HhcCC--CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 99988 443 346667764 457899999999999999998875432 3457888888888887
Q ss_pred ccc
Q 013299 441 VST 443 (446)
Q Consensus 441 ~~~ 443 (446)
|+.
T Consensus 439 ~~~ 441 (472)
T 4g1t_A 439 LQE 441 (472)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.9e-30 Score=251.83 Aligned_cols=284 Identities=13% Similarity=0.073 Sum_probs=232.6
Q ss_pred CCcHHHHHH-HHHHHHHHHHhhcCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCC
Q 013299 135 RNNIEEAIL-LLMILLRKVALKRIEWD----PSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAG 209 (446)
Q Consensus 135 ~~~~~eA~~-~l~~~~~~~~l~~~p~~----~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 209 (446)
.+++++|+. .+ +.++...|.+ ...++.+|.++...|++++|+..|+++++.+|+++.+|+.+|.++...|
T Consensus 38 ~~~~~~a~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 38 LSDYDDLTSATY-----DKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp --------CHHH-----HCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhh-----hHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCc
Confidence 456777776 54 3445666765 4678999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhh-----------hHHHHHhh
Q 013299 210 EDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQME-----------STANCLLG 278 (446)
Q Consensus 210 ~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~-----------~~a~~~lg 278 (446)
++++|+..|++++ .++|+++.++..++.++.. .|++++|+..++++++..|.+..... ...+..+|
T Consensus 113 ~~~~A~~~~~~al--~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (368)
T 1fch_A 113 QELLAISALRRCL--ELKPDNQTALMALAVSFTN-ESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILG 189 (368)
T ss_dssp CHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTH
T ss_pred CHHHHHHHHHHHH--hcCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHH
Confidence 9999999999999 8999999999988877554 79999999999999996554322110 00011344
Q ss_pred chhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHH
Q 013299 279 ISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMR--DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWL 356 (446)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~--~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~ 356 (446)
.++ ..|++++|+..|++++ +++|+ ++.+++.+|.++...|++++|+..|++++.++|++ ..+|.
T Consensus 190 ~~~------------~~~~~~~A~~~~~~a~-~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~ 255 (368)
T 1fch_A 190 SLL------------SDSLFLEVKELFLAAV-RLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND-YLLWN 255 (368)
T ss_dssp HHH------------HHHHHHHHHHHHHHHH-HHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHH
T ss_pred HHh------------hcccHHHHHHHHHHHH-HhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC-HHHHH
Confidence 443 3478999999999999 99999 89999999999999999999999999999999999 59999
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhccC-CcchhhHH
Q 013299 357 LMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSS-DKRFYKVY 435 (446)
Q Consensus 357 ~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~~~~-~~~~~~~~ 435 (446)
.+|.++..+|++++|+.+++++++.+| ++..+++.+|.++...|++++|+..|++++++.|+.....+. .+....++
T Consensus 256 ~l~~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 333 (368)
T 1fch_A 256 KLGATLANGNQSEEAVAAYRRALELQP--GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIW 333 (368)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHH
Confidence 999999999999999999999999999 899999999999999999999999999999999986443322 34445566
Q ss_pred hhhhccc
Q 013299 436 FMRKRVS 442 (446)
Q Consensus 436 ~~~~~~~ 442 (446)
...+.+.
T Consensus 334 ~~l~~~~ 340 (368)
T 1fch_A 334 STLRLAL 340 (368)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655543
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.97 E-value=7e-30 Score=245.16 Aligned_cols=267 Identities=15% Similarity=0.052 Sum_probs=240.3
Q ss_pred ccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCC
Q 013299 130 SSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAG 209 (446)
Q Consensus 130 ~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 209 (446)
..+...|++++|+..+ +.++...|+++.++..+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|
T Consensus 29 ~~~~~~~~~~~A~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~ 103 (327)
T 3cv0_A 29 LSMLKLANLAEAALAF-----EAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 103 (327)
T ss_dssp HHHHHTTCHHHHHHHH-----HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHhccHHHHHHHH-----HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcC
Confidence 3455678999999886 56678889999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhcCCCCCCChHHHHHH--------------HHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHH
Q 013299 210 EDLVALNLLRTLLSGSEDPKCLPALLIA--------------SKICGEYPDLAEEGATFASRALECLGDGCDQMESTANC 275 (446)
Q Consensus 210 ~~~eA~~~~~~al~~~~~P~~~~a~~~~--------------~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~ 275 (446)
++++|+..|++++ ..+|++...+... +..++...|++++|+.+++++++..|.+ ..++.
T Consensus 104 ~~~~A~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~ 176 (327)
T 3cv0_A 104 NANAALASLRAWL--LSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPND-----AQLHA 176 (327)
T ss_dssp CHHHHHHHHHHHH--HTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTC-----HHHHH
T ss_pred CHHHHHHHHHHHH--HhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCC-----HHHHH
Confidence 9999999999999 8999988776654 3313566789999999999999965543 57889
Q ss_pred HhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHH
Q 013299 276 LLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGW 355 (446)
Q Consensus 276 ~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 355 (446)
.+|.++... |++++|+..|++++ +.+|+++.+++.+|.++...|++++|+..|++++.++|++ ..+|
T Consensus 177 ~la~~~~~~-----------~~~~~A~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~ 243 (327)
T 3cv0_A 177 SLGVLYNLS-----------NNYDSAAANLRRAV-ELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGY-VRVM 243 (327)
T ss_dssp HHHHHHHHT-----------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHH
T ss_pred HHHHHHHHh-----------ccHHHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-HHHH
Confidence 999998664 57899999999999 9999999999999999999999999999999999999999 5999
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhhcCCCC------------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhh
Q 013299 356 LLMARILSAQKRYEDAETILNAALDQTGKWE------------QGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTK 423 (446)
Q Consensus 356 ~~la~~~~~~g~~~eA~~~~~~al~~~p~~~------------~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~ 423 (446)
..+|.++..+|++++|+.+++++++..| + +..++..+|.++..+|++++|...++++++..|+..+
T Consensus 244 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 321 (327)
T 3cv0_A 244 YNMAVSYSNMSQYDLAAKQLVRAIYMQV--GGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKEFG 321 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHT--TSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHHTT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC--ccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchhhh
Confidence 9999999999999999999999999999 7 7899999999999999999999999999999987654
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.97 E-value=5.9e-29 Score=255.90 Aligned_cols=308 Identities=13% Similarity=0.094 Sum_probs=238.6
Q ss_pred HHHHHHHhHHHHHHhCChHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHH
Q 013299 62 LNRAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEA 141 (446)
Q Consensus 62 ~~~a~~~l~~~~~~~g~~~eA~~~y~~al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA 141 (446)
...++..+|..+...|++++|+..|+++++. +|.+.. ....++.. +...|++++|
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~----~p~~~~-~~~~la~~--------------------~~~~g~~~~A 78 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIEL----DPNEPV-FYSNISAC--------------------YISTGDLEKV 78 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHH----CTTCHH-HHHHHHHH--------------------HHHHTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhh----CCCCcH-HHHHHHHH--------------------HHHcCCHHHH
Confidence 4578888999999999999999999999998 555432 23444444 3346789999
Q ss_pred HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHH----------------------
Q 013299 142 ILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYH---------------------- 199 (446)
Q Consensus 142 ~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~---------------------- 199 (446)
+..+ +.++..+|+++.++..+|.++...|++++|+..|+ ++..+|+....+.
T Consensus 79 ~~~~-----~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~ 152 (537)
T 3fp2_A 79 IEFT-----TKALEIKPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSK 152 (537)
T ss_dssp HHHH-----HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHH-----HHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9986 56778899999999999999999999999999995 7777777655331
Q ss_pred ----------------------------------------------HHHHH--------HHHCCChHHHHHHHHHHhcCC
Q 013299 200 ----------------------------------------------ILALC--------YYGAGEDLVALNLLRTLLSGS 225 (446)
Q Consensus 200 ----------------------------------------------~lg~~--------~~~~g~~~eA~~~~~~al~~~ 225 (446)
.++.+ ....|++++|+..|++++ .
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l--~ 230 (537)
T 3fp2_A 153 DEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLL--S 230 (537)
T ss_dssp ------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHH--C
T ss_pred CccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH--H
Confidence 11111 222357888999999999 8
Q ss_pred CCCCChHH-------HHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHH
Q 013299 226 EDPKCLPA-------LLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQ 298 (446)
Q Consensus 226 ~~P~~~~a-------~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~ 298 (446)
.+|+++.+ +..+|.+ +...|++++|+.+++++++..|. ..++..+|.++... |++
T Consensus 231 ~~p~~~~~~~~~~~~~~~~g~~-~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~l~~~~~~~-----------~~~ 292 (537)
T 3fp2_A 231 ANTVDDPLRENAALALCYTGIF-HFLKNNLLDAQVLLQESINLHPT------PNSYIFLALTLADK-----------ENS 292 (537)
T ss_dssp --CCCHHHHHHHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCCC------HHHHHHHHHHTCCS-----------SCC
T ss_pred HCCCcchhhHHHHHHHHHHHHH-HHhcccHHHHHHHHHHHHhcCCC------chHHHHHHHHHHHh-----------cCH
Confidence 89988663 4444444 44468889999999999985432 45788888887654 467
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 013299 299 AKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAA 378 (446)
Q Consensus 299 ~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~a 378 (446)
++|+..|++++ +.+|+++.+++.+|.++...|++++|+..|++++.++|+++ .+|..+|.++..+|++++|+.+++++
T Consensus 293 ~~A~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~~ 370 (537)
T 3fp2_A 293 QEFFKFFQKAV-DLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENV-YPYIQLACLLYKQGKFTESEAFFNET 370 (537)
T ss_dssp HHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCS-HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-ccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88999999999 89999999999999999999999999999999999999885 88999999999999999999999999
Q ss_pred HhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhh
Q 013299 379 LDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKT 424 (446)
Q Consensus 379 l~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~ 424 (446)
++.+| +++.++..+|.++...|++++|+..|++++++.|.....
T Consensus 371 ~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 414 (537)
T 3fp2_A 371 KLKFP--TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKI 414 (537)
T ss_dssp HHHCT--TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHhCC--CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhh
Confidence 99988 788888899999999999999999999999888765443
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.5e-30 Score=250.01 Aligned_cols=247 Identities=14% Similarity=0.049 Sum_probs=214.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHH
Q 013299 160 DPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASK 239 (446)
Q Consensus 160 ~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~ 239 (446)
+...++.+|.++...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|++++ .++|+++.++..+|.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al--~~~p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCL--ELQPNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH--hcCCCCHHHHHHHHH
Confidence 445699999999999999999999999999999999999999999999999999999999999 899999999998887
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHcCCCcchh-----hhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCC
Q 013299 240 ICGEYPDLAEEGATFASRALECLGDGCDQM-----ESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNM 314 (446)
Q Consensus 240 ~~~~~~~~~~eA~~~~~~al~~~~~~~~~~-----~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P 314 (446)
++. ..|++++|+.+++++++..|.+.... ....+..+|.++.. .|++++|+..|++++ +++|
T Consensus 142 ~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~-----------~g~~~~A~~~~~~al-~~~p 208 (365)
T 4eqf_A 142 SYT-NTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVD-----------SSVLEGVKELYLEAA-HQNG 208 (365)
T ss_dssp HHH-HTTCHHHHHHHHHHHHHHCHHHHCC-------------------C-----------CHHHHHHHHHHHHHH-HHSC
T ss_pred HHH-ccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhh-----------hhhHHHHHHHHHHHH-HhCc
Confidence 755 47999999999999999644321110 01223344666655 467999999999999 9999
Q ss_pred C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHH
Q 013299 315 R--DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLR 392 (446)
Q Consensus 315 ~--~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~ 392 (446)
+ ++.+++++|.++..+|++++|+..|++++.++|++ ..+|..+|.++..+|++++|+.+|+++++.+| ++..+++
T Consensus 209 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~ 285 (365)
T 4eqf_A 209 DMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPED-YSLWNRLGATLANGDRSEEAVEAYTRALEIQP--GFIRSRY 285 (365)
T ss_dssp SSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHH
T ss_pred CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CchHHHH
Confidence 9 99999999999999999999999999999999999 59999999999999999999999999999999 8999999
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhh
Q 013299 393 TKAKVQLVQGQLKGAVETYTHLLAALQVQTKT 424 (446)
Q Consensus 393 ~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~ 424 (446)
++|.++..+|++++|+..|++++++.|+....
T Consensus 286 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 317 (365)
T 4eqf_A 286 NLGISCINLGAYREAVSNFLTALSLQRKSRNQ 317 (365)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccCCC
Confidence 99999999999999999999999999875543
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-29 Score=231.90 Aligned_cols=211 Identities=19% Similarity=0.108 Sum_probs=176.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHH
Q 013299 158 EWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIA 237 (446)
Q Consensus 158 p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~ 237 (446)
|.+++++..+|.++...|++++|+..|+++++.+|+++.+|+++|.++...|++++|+..|++++ +++|+++.++..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al--~~~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLV--ARTPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhCCCcHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999 8999999999888
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCH
Q 013299 238 SKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDL 317 (446)
Q Consensus 238 ~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~ 317 (446)
|.++... + . .... .. ...|++++|+..|++++ +++|+++
T Consensus 80 g~~~~~~-~------------~--~~~~--------------~~-----------~~~g~~~~A~~~~~~al-~~~P~~~ 118 (217)
T 2pl2_A 80 SEAYVAL-Y------------R--QAED--------------RE-----------RGKGYLEQALSVLKDAE-RVNPRYA 118 (217)
T ss_dssp HHHHHHH-H------------H--TCSS--------------HH-----------HHHHHHHHHHHHHHHHH-HHCTTCH
T ss_pred HHHHHHh-h------------h--hhhh--------------hc-----------ccccCHHHHHHHHHHHH-HhCcccH
Confidence 7765431 0 0 0000 00 12367999999999999 9999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHH
Q 013299 318 SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKV 397 (446)
Q Consensus 318 ~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~ 397 (446)
.+++++|.++..+|++++|+..|+++++++ ++ ..+|.++|.++..+|++++|+..|+++++.+| +++.+++.+|.+
T Consensus 119 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P--~~~~~~~~la~~ 194 (217)
T 2pl2_A 119 PLHLQRGLVYALLGERDKAEASLKQALALE-DT-PEIRSALAELYLSMGRLDEALAQYAKALEQAP--KDLDLRVRYASA 194 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST--TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CChHHHHHHHHH
Confidence 999999999999999999999999999999 88 59999999999999999999999999999999 999999999999
Q ss_pred HHHhCCHHHHHHHHHHHH
Q 013299 398 QLVQGQLKGAVETYTHLL 415 (446)
Q Consensus 398 ~~~~g~~~eA~~~~~~~l 415 (446)
+..+|++++|++.|+++-
T Consensus 195 ~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 195 LLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HTC---------------
T ss_pred HHHccCHHHHHHHHHHHh
Confidence 999999999999998763
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-30 Score=254.33 Aligned_cols=265 Identities=15% Similarity=0.100 Sum_probs=230.5
Q ss_pred cccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCC
Q 013299 131 SFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGE 210 (446)
Q Consensus 131 ~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 210 (446)
.+...|++++|+..+ +.++...|+++.++..+|.++...|++++|+..|+++++++|+++.+|+.+|.++...|+
T Consensus 74 ~~~~~g~~~~A~~~~-----~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 148 (365)
T 4eqf_A 74 KRLKEGDLPVTILFM-----EAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSH 148 (365)
T ss_dssp HHHHHTCHHHHHHHH-----HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHCCCHHHHHHHH-----HHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcccc
Confidence 445578899999986 566788999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCCCCCCChHHHHHH---------HHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchh
Q 013299 211 DLVALNLLRTLLSGSEDPKCLPALLIA---------SKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISL 281 (446)
Q Consensus 211 ~~eA~~~~~~al~~~~~P~~~~a~~~~---------~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~ 281 (446)
+++|+..|++++ .++|++..++... .+.++...|++++|+.+++++++..|... .+.+++.+|.++
T Consensus 149 ~~~A~~~~~~al--~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~~~l~~~~ 223 (365)
T 4eqf_A 149 QQDACEALKNWI--KQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMI---DPDLQTGLGVLF 223 (365)
T ss_dssp HHHHHHHHHHHH--HHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSC---CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCcc---CHHHHHHHHHHH
Confidence 999999999999 8999877665443 13345668999999999999999755421 257889999998
Q ss_pred HhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Q 013299 282 SAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARI 361 (446)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~ 361 (446)
... |++++|+..|++++ +++|+++.+++++|.++...|++++|+..|+++++++|++ ..+|.++|.+
T Consensus 224 ~~~-----------g~~~~A~~~~~~al-~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~ 290 (365)
T 4eqf_A 224 HLS-----------GEFNRAIDAFNAAL-TVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGF-IRSRYNLGIS 290 (365)
T ss_dssp HHH-----------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHH
T ss_pred HHC-----------CCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-hHHHHHHHHH
Confidence 664 57899999999999 9999999999999999999999999999999999999999 5999999999
Q ss_pred HHHccCHHHHHHHHHHHHhhcCCCC----------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 013299 362 LSAQKRYEDAETILNAALDQTGKWE----------QGELLRTKAKVQLVQGQLKGAVETYTHLLAAL 418 (446)
Q Consensus 362 ~~~~g~~~eA~~~~~~al~~~p~~~----------~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~ 418 (446)
+..+|++++|+.++++++++.|+.. +..+|..++.++..+|+.+.+....++.++..
T Consensus 291 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~~~ 357 (365)
T 4eqf_A 291 CINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLDVL 357 (365)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCCGGG
T ss_pred HHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHHHH
Confidence 9999999999999999999998311 36789999999999999999999888766554
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-29 Score=249.11 Aligned_cols=232 Identities=9% Similarity=-0.026 Sum_probs=186.3
Q ss_pred HHhhcCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCC
Q 013299 152 VALKRIEWDPSILDHLSFAFSIAGD-LSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKC 230 (446)
Q Consensus 152 ~~l~~~p~~~~~~~~lg~~l~~~~~-~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~ 230 (446)
.++..+|+++.+|+++|.++...|+ +++|+.+|++++.++|+++.+|+++|.++..+|++++|+..|+++| .++|++
T Consensus 122 ~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal--~ldP~~ 199 (382)
T 2h6f_A 122 DAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADIL--NQDAKN 199 (382)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHH--HHCTTC
T ss_pred HHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH--HhCccC
Confidence 3444557777788888888888886 8888888888888888888888888888888888888888888888 788888
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHH
Q 013299 231 LPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAAR 310 (446)
Q Consensus 231 ~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~ 310 (446)
+.++..+|.++. ..|++++|+.+|+++|+..|.+ ..+|+++|.++...+... .....++++.+|++++
T Consensus 200 ~~a~~~lg~~~~-~~g~~~eAl~~~~~al~l~P~~-----~~a~~~lg~~l~~l~~~~-----~eA~~~~el~~~~~Al- 267 (382)
T 2h6f_A 200 YHAWQHRQWVIQ-EFKLWDNELQYVDQLLKEDVRN-----NSVWNQRYFVISNTTGYN-----DRAVLEREVQYTLEMI- 267 (382)
T ss_dssp HHHHHHHHHHHH-HHTCCTTHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTTCSC-----SHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHH-HcCChHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhcCcc-----hHHHHHHHHHHHHHHH-
Confidence 888887776544 4677888888888888854443 567888888876622100 0001234479999999
Q ss_pred hhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcc--------C-HHHHHHHHHHH-
Q 013299 311 STNMRDLSILYRLSLEYAEQR--KLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQK--------R-YEDAETILNAA- 378 (446)
Q Consensus 311 ~~~P~~~~a~~~lg~~~~~~~--~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g--------~-~~eA~~~~~~a- 378 (446)
+++|++..+|+++|.++...| ++++|+..++++ .++|++ ..++..+|.++..+| + +++|+.+|+++
T Consensus 268 ~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~-~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~ 345 (382)
T 2h6f_A 268 KLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSS-PYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILA 345 (382)
T ss_dssp HHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCC-HHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCC-HHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHH
Confidence 999999999999999999988 799999999998 999999 599999999999985 3 69999999999
Q ss_pred HhhcCCCCcHHHHHHHHHHHHHh
Q 013299 379 LDQTGKWEQGELLRTKAKVQLVQ 401 (446)
Q Consensus 379 l~~~p~~~~~~~~~~~a~~~~~~ 401 (446)
++++| .....|..++..+..+
T Consensus 346 ~~~DP--~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 346 KEKDT--IRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HTTCG--GGHHHHHHHHHHHHHH
T ss_pred HHhCc--hhHHHHHHHHHHHHHH
Confidence 99999 8999999988877654
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4.2e-27 Score=225.72 Aligned_cols=239 Identities=15% Similarity=0.041 Sum_probs=215.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHH
Q 013299 160 DPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASK 239 (446)
Q Consensus 160 ~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~ 239 (446)
++..++.+|..+...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|++++ ..+|+++.++..++.
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~--~~~~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHAR--MLDPKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--hcCcCCHHHHHHHHH
Confidence 456778999999999999999999999999999999999999999999999999999999999 899999999988887
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHh--------------hc-hhHhhhhhhhchHHHHHHHHHHHHH
Q 013299 240 ICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLL--------------GI-SLSAQSKVAITDFDRATRQAKALQA 304 (446)
Q Consensus 240 ~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~l--------------g~-~~~~~~~~~~~~~~~~~~~~eAl~~ 304 (446)
++. ..|++++|+..++++++..|... ..+..+ |. ++.. .|++++|+..
T Consensus 98 ~~~-~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~A~~~ 160 (327)
T 3cv0_A 98 SHT-NEHNANAALASLRAWLLSQPQYE-----QLGSVNLQADVDIDDLNVQSEDFFFAA-----------PNEYRECRTL 160 (327)
T ss_dssp HHH-HTTCHHHHHHHHHHHHHTSTTTT-----TC--------------------CCTTS-----------HHHHHHHHHH
T ss_pred HHH-HcCCHHHHHHHHHHHHHhCCccH-----HHHHHHhHHHHHHHHHHHHHHhHHHHH-----------cccHHHHHHH
Confidence 755 47899999999999999654432 233333 43 3433 4679999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCC
Q 013299 305 LVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGK 384 (446)
Q Consensus 305 ~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~ 384 (446)
+++++ +.+|+++.+++.+|.++...|++++|+..+++++.++|++ ..+|..+|.++...|++++|+.+++++++..|
T Consensus 161 ~~~~~-~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~- 237 (327)
T 3cv0_A 161 LHAAL-EMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDD-AQLWNKLGATLANGNRPQEALDAYNRALDINP- 237 (327)
T ss_dssp HHHHH-HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-
T ss_pred HHHHH-hhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-
Confidence 99999 9999999999999999999999999999999999999999 59999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhh
Q 013299 385 WEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQ 421 (446)
Q Consensus 385 ~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~ 421 (446)
++..+++.+|.++...|++++|+..|++++++.|..
T Consensus 238 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 273 (327)
T 3cv0_A 238 -GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGG 273 (327)
T ss_dssp -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS
T ss_pred -CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 899999999999999999999999999999999874
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-27 Score=219.65 Aligned_cols=247 Identities=12% Similarity=0.020 Sum_probs=218.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCC-------h
Q 013299 159 WDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKC-------L 231 (446)
Q Consensus 159 ~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~-------~ 231 (446)
..++++..+|.++...|++++|+..|+++++.+ +++.+|+.+|.++...|++++|+..|++++ ..+|++ +
T Consensus 3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~~~~~~~~~ 79 (258)
T 3uq3_A 3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAV--EQGREMRADYKVIS 79 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHTTCCHHHHH
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHH--HhCcccccchHHHH
Confidence 346788999999999999999999999999999 999999999999999999999999999999 888877 6
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHh
Q 013299 232 PALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARS 311 (446)
Q Consensus 232 ~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~ 311 (446)
.++..+|.++. ..|++++|+.+++++++..+. .. ++ ...+++++|+..+++++ .
T Consensus 80 ~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~------~~-------~~-----------~~~~~~~~a~~~~~~~~-~ 133 (258)
T 3uq3_A 80 KSFARIGNAYH-KLGDLKKTIEYYQKSLTEHRT------AD-------IL-----------TKLRNAEKELKKAEAEA-Y 133 (258)
T ss_dssp HHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCCC------HH-------HH-----------HHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHH-HcccHHHHHHHHHHHHhcCch------hH-------HH-----------HHHhHHHHHHHHHHHHH-H
Confidence 77887776655 579999999999999995432 12 22 22467899999999999 9
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHH
Q 013299 312 TNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELL 391 (446)
Q Consensus 312 ~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 391 (446)
.+|+++.+++.+|.++...|++++|+..|++++.++|++ ..+|..+|.++..+|++++|+.+++++++.+| +++.++
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~ 210 (258)
T 3uq3_A 134 VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED-ARGYSNRAAALAKLMSFPEAIADCNKAIEKDP--NFVRAY 210 (258)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHH
T ss_pred cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCccc-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH--HHHHHH
Confidence 999999999999999999999999999999999999999 59999999999999999999999999999999 899999
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhccCCcchhhHHhhhhcc
Q 013299 392 RTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKVYFMRKRV 441 (446)
Q Consensus 392 ~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 441 (446)
+.+|.++..+|++++|+..|++++++.|+.. ..|.-..++....++
T Consensus 211 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~----~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 211 IRKATAQIAVKEYASALETLDAARTKDAEVN----NGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH----TTTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhChhhc----CCCchHHHHHHHHHh
Confidence 9999999999999999999999999996542 234444455444443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-27 Score=224.61 Aligned_cols=242 Identities=15% Similarity=0.086 Sum_probs=211.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChH----HHH
Q 013299 160 DPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLP----ALL 235 (446)
Q Consensus 160 ~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~----a~~ 235 (446)
+++++...|.++...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|++++ . .|+++. ++.
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~--~-~~~~~~~~~~~~~ 78 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYF--S-KVNATKAKSADFE 78 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHH--T-TSCTTTCCHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH--h-ccCchhHHHHHHH
Confidence 456788999999999999999999999999999999999999999999999999999999999 6 444443 366
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCC
Q 013299 236 IASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMR 315 (446)
Q Consensus 236 ~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~ 315 (446)
.+|.++ ...|++++|+.+++++++..|.+ ..++..+|.++... |++++|+..|++++ +++|+
T Consensus 79 ~lg~~~-~~~~~~~~A~~~~~~a~~~~~~~-----~~~~~~l~~~~~~~-----------~~~~~A~~~~~~al-~~~~~ 140 (272)
T 3u4t_A 79 YYGKIL-MKKGQDSLAIQQYQAAVDRDTTR-----LDMYGQIGSYFYNK-----------GNFPLAIQYMEKQI-RPTTT 140 (272)
T ss_dssp HHHHHH-HHTTCHHHHHHHHHHHHHHSTTC-----THHHHHHHHHHHHT-----------TCHHHHHHHHGGGC-CSSCC
T ss_pred HHHHHH-HHcccHHHHHHHHHHHHhcCccc-----HHHHHHHHHHHHHc-----------cCHHHHHHHHHHHh-hcCCC
Confidence 666665 45799999999999999965544 57899999999765 57899999999999 99999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccC---HHHHHHHHHHHHhhc---CCCC---
Q 013299 316 DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKR---YEDAETILNAALDQT---GKWE--- 386 (446)
Q Consensus 316 ~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~---~~eA~~~~~~al~~~---p~~~--- 386 (446)
++.+++++|......+++++|+..|+++++++|++ ..++..+|.++..+|+ +++|+..++++++.. | +
T Consensus 141 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~ 217 (272)
T 3u4t_A 141 DPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNI-YIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGG--AKYK 217 (272)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGG--GGGH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc-hHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhccc--ccch
Confidence 99999999955555679999999999999999999 5999999999999999 999999999999876 5 3
Q ss_pred --cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhc
Q 013299 387 --QGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTF 425 (446)
Q Consensus 387 --~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~~ 425 (446)
...++..+|.++...|++++|++.|++++++.|++..+.
T Consensus 218 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 258 (272)
T 3u4t_A 218 DELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAI 258 (272)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHH
Confidence 237889999999999999999999999999987765544
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.95 E-value=6.3e-26 Score=216.92 Aligned_cols=277 Identities=10% Similarity=0.042 Sum_probs=223.0
Q ss_pred HHHhCChHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHH
Q 013299 73 WKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKV 152 (446)
Q Consensus 73 ~~~~g~~~eA~~~y~~al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~ 152 (446)
.+..|++.+|+..++++... +|++......-++. .|+.+|++++|+..+ +
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~----~p~~~~e~~~~l~r--------------------~yi~~g~~~~al~~~-----~- 58 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPS----SPERDVERDVFLYR--------------------AYLAQRKYGVVLDEI-----K- 58 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCC----SHHHHHHHHHHHHH--------------------HHHHTTCHHHHHHHS-----C-
T ss_pred HHHHHHHHHHHHHHHhcccC----CchhhHHHHHHHHH--------------------HHHHCCCHHHHHHHh-----c-
Confidence 47799999999999998887 77653211122222 355678899998653 1
Q ss_pred HhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCC--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCC
Q 013299 153 ALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPG--IINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKC 230 (446)
Q Consensus 153 ~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~ 230 (446)
...|.+..++..++..+...|+.++|++.+++++.. +|+++.+++.+|.++...|++++|+..|++ |++
T Consensus 59 --~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~~~ 129 (291)
T 3mkr_A 59 --PSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------GDS 129 (291)
T ss_dssp --TTSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------CCS
T ss_pred --ccCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------CCC
Confidence 224556678888999999999999999999998865 699999999999999999999999998875 788
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHH
Q 013299 231 LPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAAR 310 (446)
Q Consensus 231 ~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~ 310 (446)
+.++..++.++.. .|++++|+..++++++..|++ ....++.++.... ...|++++|+..|++++
T Consensus 130 ~~~~~~l~~~~~~-~g~~~~A~~~l~~~~~~~p~~-------~~~~l~~a~~~l~-------~~~~~~~eA~~~~~~~l- 193 (291)
T 3mkr_A 130 LECMAMTVQILLK-LDRLDLARKELKKMQDQDEDA-------TLTQLATAWVSLA-------AGGEKLQDAYYIFQEMA- 193 (291)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHH-------HCTTHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHH-CCCHHHHHHHHHHHHhhCcCc-------HHHHHHHHHHHHH-------hCchHHHHHHHHHHHHH-
Confidence 9999888877554 799999999999999964332 1223332222111 01367999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHH-HHHHHHHHHhhcCCCCcHH
Q 013299 311 STNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYED-AETILNAALDQTGKWEQGE 389 (446)
Q Consensus 311 ~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~e-A~~~~~~al~~~p~~~~~~ 389 (446)
+.+|+++.+++++|.++..+|++++|+..|+++++++|++ ..+|.++|.++..+|++++ +..+++++++++| +++.
T Consensus 194 ~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~-~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P--~~~~ 270 (291)
T 3mkr_A 194 DKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGH-PETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR--SHPF 270 (291)
T ss_dssp HHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT--TCHH
T ss_pred HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--CChH
Confidence 9999999999999999999999999999999999999999 4999999999999999987 5689999999999 8877
Q ss_pred HHHHHHHHHHHhCCHHHHHHHH
Q 013299 390 LLRTKAKVQLVQGQLKGAVETY 411 (446)
Q Consensus 390 ~~~~~a~~~~~~g~~~eA~~~~ 411 (446)
+. .+..+.+.|+++...|
T Consensus 271 ~~----d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 271 IK----EYRAKENDFDRLVLQY 288 (291)
T ss_dssp HH----HHHHHHHHHHHHHHHH
T ss_pred HH----HHHHHHHHHHHHHHHc
Confidence 54 3455677777777666
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.8e-24 Score=216.83 Aligned_cols=346 Identities=12% Similarity=0.029 Sum_probs=250.3
Q ss_pred HHHHHHHHhhhhc----ccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHH----hCChHH
Q 013299 10 LEAIFLKAKCLQG----LGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKL----ADAPRE 81 (446)
Q Consensus 10 ~~~~~~~g~~~~~----~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~----~g~~~e 81 (446)
.++++..|.+|.. .+++++|+..|+++++.. . ..+...+|.+|.. .+++++
T Consensus 39 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~-------~--------------~~a~~~Lg~~y~~g~g~~~~~~~ 97 (490)
T 2xm6_A 39 AKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG-------Y--------------TPAEYVLGLRYMNGEGVPQDYAQ 97 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-------C--------------HHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC-------C--------------HHHHHHHHHHHHcCCCCCCCHHH
Confidence 6778888888888 888888888888887531 1 2366667777777 777777
Q ss_pred HHHHHHHHhCCCCCCChHHHHHHHHHHHHHHhhhcC-CCC-------------C--CccccccCccccC----CCcHHHH
Q 013299 82 TIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGG-ETC-------------P--PNLRSQMGSSFVP----RNNIEEA 141 (446)
Q Consensus 82 A~~~y~~al~~~~~~~~~~~~~l~~~~a~~ll~~~~-~~~-------------~--~~~~~~~~~~~~~----~~~~~eA 141 (446)
|+.+|+++++.. ++. ....++.++..+.. ... . +.....++.+|.. .+++++|
T Consensus 98 A~~~~~~a~~~~---~~~----a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A 170 (490)
T 2xm6_A 98 AVIWYKKAALKG---LPQ----AQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMA 170 (490)
T ss_dssp HHHHHHHHHHTT---CHH----HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHCC---CHH----HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 777777777651 221 13445555444211 100 0 0000112222322 5577777
Q ss_pred HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH----CCChHH
Q 013299 142 ILLLMILLRKVALKRIEWDPSILDHLSFAFSI----AGDLSSLATQIEELLPGIINRKERYHILALCYYG----AGEDLV 213 (446)
Q Consensus 142 ~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~e 213 (446)
+..+. .+.. ..++.+++.+|.++.. .+++++|+.+|+++++. +++.+++.+|.++.. .+++++
T Consensus 171 ~~~~~-----~a~~--~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~ 241 (490)
T 2xm6_A 171 REWYS-----KAAE--QGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQ 241 (490)
T ss_dssp HHHHH-----HHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHH-----HHHH--CCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHH
Confidence 77652 2233 3577888888888887 78888888888888764 567788888888886 778888
Q ss_pred HHHHHHHHhcCCCCCCChHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhc
Q 013299 214 ALNLLRTLLSGSEDPKCLPALLIASKICGE---YPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAIT 290 (446)
Q Consensus 214 A~~~~~~al~~~~~P~~~~a~~~~~~~~~~---~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~ 290 (446)
|+..|++++ .. +++.+++.++.++.. ..++.++|+.+|+++++. .+ +.+++.+|.+|......
T Consensus 242 A~~~~~~a~--~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~-----~~a~~~Lg~~y~~~~~g--- 307 (490)
T 2xm6_A 242 SRVLFSQSA--EQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GN-----SDGQYYLAHLYDKGAEG--- 307 (490)
T ss_dssp HHHHHHHHH--TT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TC-----HHHHHHHHHHHHHCBTT---
T ss_pred HHHHHHHHH--HC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CC-----HHHHHHHHHHHHcCCCC---
Confidence 888888888 33 556677766666543 146788888888888763 11 45777888777542000
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH---
Q 013299 291 DFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQR---KLNAAHYYAKMLLKLEGGSNLKGWLLMARILSA--- 364 (446)
Q Consensus 291 ~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~---~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~--- 364 (446)
..+++++|+.+|++++ +. +++.+++++|.++...| ++++|+.+|+++++. ++ ..+++++|.++..
T Consensus 308 ---~~~~~~~A~~~~~~a~-~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~-~~a~~~Lg~~y~~g~g 378 (490)
T 2xm6_A 308 ---VAKNREQAISWYTKSA-EQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GE-KAAQFNLGNALLQGKG 378 (490)
T ss_dssp ---BCCCHHHHHHHHHHHH-HT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TC-HHHHHHHHHHHHHTSS
T ss_pred ---CcCCHHHHHHHHHHHH-hc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CC-HHHHHHHHHHHHcCCC
Confidence 0146899999999999 75 67899999999999876 899999999999887 56 4999999999999
Q ss_pred -ccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHh
Q 013299 365 -QKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLV----QGQLKGAVETYTHLLAALQ 419 (446)
Q Consensus 365 -~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~----~g~~~eA~~~~~~~l~l~~ 419 (446)
.+++++|+.+|+++++. +++.+++++|.++.. .+++++|+..|+++++..|
T Consensus 379 ~~~~~~~A~~~~~~A~~~----~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 379 VKKDEQQAAIWMRKAAEQ----GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp SCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHhC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 89999999999999874 467899999999999 8999999999999999983
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-26 Score=217.42 Aligned_cols=243 Identities=12% Similarity=0.055 Sum_probs=209.7
Q ss_pred cccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHH----HHHHHHHHHH
Q 013299 131 SFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKE----RYHILALCYY 206 (446)
Q Consensus 131 ~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~----~~~~lg~~~~ 206 (446)
.+...|++++|+..+ +.++...|+++.++..+|.++...|++++|+..|++++. .|+++. +|+.+|.++.
T Consensus 12 ~~~~~~~~~~A~~~~-----~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 12 FLFKNNNYAEAIEVF-----NKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHTTTCHHHHHHHH-----HHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHH-----HHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHH
Confidence 455678999999986 567788999999999999999999999999999999999 555544 4999999999
Q ss_pred HCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhh-chhHhhh
Q 013299 207 GAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLG-ISLSAQS 285 (446)
Q Consensus 207 ~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg-~~~~~~~ 285 (446)
..|++++|+..|++++ ..+|+++.++..+|.++.. .|++++|+.+++++++. .|.. ..+++.+| .+|..
T Consensus 86 ~~~~~~~A~~~~~~a~--~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~-~~~~----~~~~~~l~~~~~~~-- 155 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAV--DRDTTRLDMYGQIGSYFYN-KGNFPLAIQYMEKQIRP-TTTD----PKVFYELGQAYYYN-- 155 (272)
T ss_dssp HTTCHHHHHHHHHHHH--HHSTTCTHHHHHHHHHHHH-TTCHHHHHHHHGGGCCS-SCCC----HHHHHHHHHHHHHT--
T ss_pred HcccHHHHHHHHHHHH--hcCcccHHHHHHHHHHHHH-ccCHHHHHHHHHHHhhc-CCCc----HHHHHHHHHHHHHH--
Confidence 9999999999999999 8999999999988877655 79999999999999995 3332 67899999 77654
Q ss_pred hhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhc---CCC----CHHHH
Q 013299 286 KVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRK---LNAAHYYAKMLLKLE---GGS----NLKGW 355 (446)
Q Consensus 286 ~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~---~~~A~~~~~~al~l~---P~~----~~~~~ 355 (446)
+++++|+..|++++ +++|+++.+++.+|.++...|+ +++|+..|++++++. |+. -..++
T Consensus 156 ----------~~~~~A~~~~~~a~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 224 (272)
T 3u4t_A 156 ----------KEYVKADSSFVKVL-ELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEAN 224 (272)
T ss_dssp ----------TCHHHHHHHHHHHH-HHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHHH-HhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHH
Confidence 36899999999999 9999999999999999999999 999999999999987 541 02689
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhC
Q 013299 356 LLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQG 402 (446)
Q Consensus 356 ~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g 402 (446)
..+|.++..+|++++|+.+++++++++| ++..++-.++.+....+
T Consensus 225 ~~l~~~~~~~~~~~~A~~~~~~al~~~p--~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 225 EYIAYYYTINRDKVKADAAWKNILALDP--TNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHC-------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCc--cHHHHHHHhhhhhcccc
Confidence 9999999999999999999999999999 89999888777665443
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-23 Score=214.91 Aligned_cols=310 Identities=13% Similarity=0.039 Sum_probs=232.4
Q ss_pred HHHHHhHHHHHH----hCChHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHhhhcC-CCC---------------CCc
Q 013299 64 RAVELLPELWKL----ADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGG-ETC---------------PPN 123 (446)
Q Consensus 64 ~a~~~l~~~~~~----~g~~~eA~~~y~~al~~~~~~~~~~~~~l~~~~a~~ll~~~~-~~~---------------~~~ 123 (446)
.+...+|.+|.. .+++++|+.+|+++++.. ++. ....++.++..+.. ... .+.
T Consensus 40 ~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~----a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~ 112 (490)
T 2xm6_A 40 KAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTP----AEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQ 112 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH----HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHH----HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHH
Confidence 577888999999 999999999999999872 222 24566776665311 110 000
Q ss_pred cccccCccccC----CCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHhhCCCCCCcH
Q 013299 124 LRSQMGSSFVP----RNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSI----AGDLSSLATQIEELLPGIINRK 195 (446)
Q Consensus 124 ~~~~~~~~~~~----~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~----~~~~~~A~~~~~~al~~~p~~~ 195 (446)
....++.+|.. .+++++|+..+. .+.. +.++.++..+|.++.. .+++++|++.|+++++. +++
T Consensus 113 a~~~Lg~~y~~g~g~~~~~~~A~~~~~-----~a~~--~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~ 183 (490)
T 2xm6_A 113 AQQNLGVMYHEGNGVKVDKAESVKWFR-----LAAE--QGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNV 183 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHH-----HHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHH-----HHHH--CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCH
Confidence 00223334443 567778877652 2222 4677888888888877 77888888888888765 578
Q ss_pred HHHHHHHHHHHH----CCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHcCCCcch
Q 013299 196 ERYHILALCYYG----AGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGE---YPDLAEEGATFASRALECLGDGCDQ 268 (446)
Q Consensus 196 ~~~~~lg~~~~~----~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~---~~~~~~eA~~~~~~al~~~~~~~~~ 268 (446)
.+++.||.+|.. .+++++|+..|++++ . ++++.+++.++.++.. ..+++++|+.+|+++++. . +
T Consensus 184 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~--~--~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~-~--- 254 (490)
T 2xm6_A 184 WSCNQLGYMYSRGLGVERNDAISAQWYRKSA--T--SGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ-G-N--- 254 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH--H--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT-T-C---
T ss_pred HHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH--H--CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C-C---
Confidence 888888888887 788888888888888 3 3566777777766554 256788888888888773 1 1
Q ss_pred hhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHH
Q 013299 269 MESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQ-----RKLNAAHYYAKML 343 (446)
Q Consensus 269 ~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~-----~~~~~A~~~~~~a 343 (446)
+.+++.+|.+|..-. ...+++++|+.+|++++ +. +++.+++.+|.++... +++++|+..|+++
T Consensus 255 --~~a~~~lg~~y~~g~-------~~~~d~~~A~~~~~~a~-~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a 322 (490)
T 2xm6_A 255 --SIAQFRLGYILEQGL-------AGAKEPLKALEWYRKSA-EQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKS 322 (490)
T ss_dssp --HHHHHHHHHHHHHTT-------TSSCCHHHHHHHHHHHH-TT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHCCC-------CCCCCHHHHHHHHHHHH-Hc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHH
Confidence 457777887775410 00246899999999999 65 7889999999999998 9999999999999
Q ss_pred HhhcCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHH----hCCHHHHHHHHHHHHH
Q 013299 344 LKLEGGSNLKGWLLMARILSAQK---RYEDAETILNAALDQTGKWEQGELLRTKAKVQLV----QGQLKGAVETYTHLLA 416 (446)
Q Consensus 344 l~l~P~~~~~~~~~la~~~~~~g---~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~----~g~~~eA~~~~~~~l~ 416 (446)
++. ++ ..++.++|.++...| ++++|+.+|+++++. +++.+++++|.++.. .+++++|+..|+++++
T Consensus 323 ~~~--~~-~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~ 395 (490)
T 2xm6_A 323 AEQ--GD-ATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE 395 (490)
T ss_dssp HHT--TC-HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred Hhc--CC-HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh
Confidence 876 45 489999999999866 899999999999975 467899999999999 8999999999999987
Q ss_pred H
Q 013299 417 A 417 (446)
Q Consensus 417 l 417 (446)
.
T Consensus 396 ~ 396 (490)
T 2xm6_A 396 Q 396 (490)
T ss_dssp T
T ss_pred C
Confidence 5
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=6e-26 Score=210.08 Aligned_cols=208 Identities=14% Similarity=0.079 Sum_probs=184.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCc-------HHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCCh
Q 013299 159 WDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINR-------KERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCL 231 (446)
Q Consensus 159 ~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~ 231 (446)
.++.++..+|.++...|++++|+..|++++.++|++ +.+|+.+|.++...|++++|+..|++++ .++|+ .
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~--~~~~~-~ 112 (258)
T 3uq3_A 36 KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSL--TEHRT-A 112 (258)
T ss_dssp CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCCC-H
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH--hcCch-h
Confidence 446678889999999999999999999999998887 7999999999999999999999999999 78887 2
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHh
Q 013299 232 PALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARS 311 (446)
Q Consensus 232 ~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~ 311 (446)
..+ ...|++++|+..+++++.. .|. ...++..+|.++... |++++|+..|++++ +
T Consensus 113 ~~~--------~~~~~~~~a~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~-----------~~~~~A~~~~~~a~-~ 167 (258)
T 3uq3_A 113 DIL--------TKLRNAEKELKKAEAEAYV-NPE----KAEEARLEGKEYFTK-----------SDWPNAVKAYTEMI-K 167 (258)
T ss_dssp HHH--------HHHHHHHHHHHHHHHHHHC-CHH----HHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-H
T ss_pred HHH--------HHHhHHHHHHHHHHHHHHc-Ccc----hHHHHHHHHHHHHHh-----------cCHHHHHHHHHHHH-h
Confidence 222 2246789999999999994 332 367899999998664 57899999999999 9
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhc------CCC
Q 013299 312 TNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQT------GKW 385 (446)
Q Consensus 312 ~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~------p~~ 385 (446)
.+|+++.+++.+|.++...|++++|+..|++++.++|++ ..+|..+|.++..+|++++|+.+++++++.+ |
T Consensus 168 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p-- 244 (258)
T 3uq3_A 168 RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF-VRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGS-- 244 (258)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTT--
T ss_pred cCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHH-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCC--
Confidence 999999999999999999999999999999999999999 5999999999999999999999999999999 8
Q ss_pred CcHHHHHHHHHH
Q 013299 386 EQGELLRTKAKV 397 (446)
Q Consensus 386 ~~~~~~~~~a~~ 397 (446)
++..++..++.+
T Consensus 245 ~~~~~~~~l~~~ 256 (258)
T 3uq3_A 245 SAREIDQLYYKA 256 (258)
T ss_dssp THHHHHHHHHHT
T ss_pred chHHHHHHHHHh
Confidence 788877776654
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.94 E-value=2e-25 Score=213.44 Aligned_cols=257 Identities=16% Similarity=0.037 Sum_probs=217.7
Q ss_pred CCcHHHHHHHHHHHHHHHHhhcCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHH
Q 013299 135 RNNIEEAILLLMILLRKVALKRIEWD-PSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLV 213 (446)
Q Consensus 135 ~~~~~eA~~~l~~~~~~~~l~~~p~~-~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~e 213 (446)
.|++++|+..+ +.+....|++ .++...++.++...|++++|+..++.. +|.+..++..++..+...|++++
T Consensus 12 ~g~y~~ai~~~-----~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~---~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 12 IGSYQQCINEA-----QRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS---SAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp TTCHHHHHHHH-----HHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT---SCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHH-----HhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc---CChhHHHHHHHHHHHcCCCcHHH
Confidence 67899998764 3444555665 467788999999999999999988763 67788899999999999999999
Q ss_pred HHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHH
Q 013299 214 ALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFD 293 (446)
Q Consensus 214 A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~ 293 (446)
|+..+++++....+|+++.+++.+|.++. ..|++++|+..+++ +++ ..++..+|.++..+
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~-~~g~~~~Al~~l~~-----~~~-----~~~~~~l~~~~~~~--------- 143 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYF-YDQNPDAALRTLHQ-----GDS-----LECMAMTVQILLKL--------- 143 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHH-HTTCHHHHHHHHTT-----CCS-----HHHHHHHHHHHHHT---------
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHH-HCCCHHHHHHHHhC-----CCC-----HHHHHHHHHHHHHC---------
Confidence 99999999831247999999988877755 47999999999987 333 56889999998665
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHH
Q 013299 294 RATRQAKALQALVSAARSTNMRDLSILYRLSLE--YAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDA 371 (446)
Q Consensus 294 ~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~--~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA 371 (446)
|++++|+..|++++ +.+|++.......|++ +...|++++|+..|+++++.+|++ ..+|+++|.++..+|++++|
T Consensus 144 --g~~~~A~~~l~~~~-~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~eA 219 (291)
T 3mkr_A 144 --DRLDLARKELKKMQ-DQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPT-LLLLNGQAACHMAQGRWEAA 219 (291)
T ss_dssp --TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCC-HHHHHHHHHHHHHTTCHHHH
T ss_pred --CCHHHHHHHHHHHH-hhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHcCCHHHH
Confidence 57899999999999 9999997555544433 334589999999999999999999 59999999999999999999
Q ss_pred HHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHH-HHHHHHHHHHHHhhhhhhc
Q 013299 372 ETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKG-AVETYTHLLAALQVQTKTF 425 (446)
Q Consensus 372 ~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~e-A~~~~~~~l~l~~~~~~~~ 425 (446)
+..++++++.+| +++.+++++|.++...|+.++ +.+.+++++++.|+++...
T Consensus 220 ~~~l~~al~~~p--~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~ 272 (291)
T 3mkr_A 220 EGVLQEALDKDS--GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK 272 (291)
T ss_dssp HHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH
Confidence 999999999999 999999999999999999987 4688899999998765543
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.6e-26 Score=207.54 Aligned_cols=169 Identities=20% Similarity=0.119 Sum_probs=127.0
Q ss_pred hhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHC-----------CChHHHHHHHHHHh
Q 013299 154 LKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGA-----------GEDLVALNLLRTLL 222 (446)
Q Consensus 154 l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-----------g~~~eA~~~~~~al 222 (446)
++.+|+++.++..+|.++...|++++|+..|+++++++|+++.+|+++|.++... |++++|+..|++++
T Consensus 32 l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al 111 (217)
T 2pl2_A 32 LKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAE 111 (217)
T ss_dssp HTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHH
Confidence 3445788889999999999999999999999999999999999999999999998 77777777777777
Q ss_pred cCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHH
Q 013299 223 SGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKAL 302 (446)
Q Consensus 223 ~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl 302 (446)
+++|+++.+++.+|. ++.. .|++++|+
T Consensus 112 --~~~P~~~~~~~~lg~----------------------------------------~~~~-----------~g~~~~A~ 138 (217)
T 2pl2_A 112 --RVNPRYAPLHLQRGL----------------------------------------VYAL-----------LGERDKAE 138 (217)
T ss_dssp --HHCTTCHHHHHHHHH----------------------------------------HHHH-----------TTCHHHHH
T ss_pred --HhCcccHHHHHHHHH----------------------------------------HHHH-----------cCChHHHH
Confidence 667776665554443 3322 23567788
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 013299 303 QALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAA 378 (446)
Q Consensus 303 ~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~a 378 (446)
..|++++ +++ +++.+++++|.++..+|++++|+..|+++++++|++ ..++.++|.++..+|++++|+..++++
T Consensus 139 ~~~~~al-~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~-~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 139 ASLKQAL-ALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKD-LDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHH-HHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHTC--------------
T ss_pred HHHHHHH-hcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 8888888 888 888888888888888888888888888888888888 488888888888888888888888765
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.94 E-value=6.5e-23 Score=212.07 Aligned_cols=379 Identities=12% Similarity=-0.002 Sum_probs=275.2
Q ss_pred HHHHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHH
Q 013299 10 LEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRA 89 (446)
Q Consensus 10 ~~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~a 89 (446)
.++|...+.. .+.|++++|...|+++++. .|.+ ...+...+.++.+.|++++|+..|+++
T Consensus 13 ~~~w~~l~~~-~~~~~~~~a~~~~e~al~~--------~P~~-----------~~~w~~~~~~~~~~~~~~~a~~~~~ra 72 (530)
T 2ooe_A 13 LDAWSILIRE-AQNQPIDKARKTYERLVAQ--------FPSS-----------GRFWKLYIEAEIKAKNYDKVEKLFQRC 72 (530)
T ss_dssp HHHHHHHHHH-HHSSCHHHHHHHHHHHHTT--------CTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHhCCHHHHHHHHHHHHHH--------CCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 5677777774 7789999999999999986 4553 246677788899999999999999999
Q ss_pred hCCCCCCChHHHHHHHHHHHHHHhhh-cCCC-------------------CCCccc-c-ccCccccC---------CCcH
Q 013299 90 LLPCWNLDAETTAKLQKEFAIFLLYC-GGET-------------------CPPNLR-S-QMGSSFVP---------RNNI 138 (446)
Q Consensus 90 l~~~~~~~~~~~~~l~~~~a~~ll~~-~~~~-------------------~~~~~~-~-~~~~~~~~---------~~~~ 138 (446)
+.. .|.. . +....+.+.... +... .++... + ....+... +|++
T Consensus 73 l~~----~p~~-~-lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 146 (530)
T 2ooe_A 73 LMK----VLHI-D-LWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRI 146 (530)
T ss_dssp TTT----CCCH-H-HHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHH
T ss_pred Hhc----CCCh-H-HHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHH
Confidence 999 3321 1 222222221111 0000 000000 0 01111111 4566
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCH--HHHHHHHH-----------------------------------------------
Q 013299 139 EEAILLLMILLRKVALKRIEWDP--SILDHLSF----------------------------------------------- 169 (446)
Q Consensus 139 ~eA~~~l~~~~~~~~l~~~p~~~--~~~~~lg~----------------------------------------------- 169 (446)
++|..++ +.++. .|... ..|.....
T Consensus 147 ~~a~~~y-----~~al~-~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p 220 (530)
T 2ooe_A 147 TAVRRVY-----QRGCV-NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPP 220 (530)
T ss_dssp HHHHHHH-----HHHTT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCC
T ss_pred HHHHHHH-----HHHHh-chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCC
Confidence 7777665 45556 46542 22211100
Q ss_pred ----------------HHHh------cCCH----HHHHHHHHhhCCCCCCcHHHHHHHHHHHHH-------CCChH----
Q 013299 170 ----------------AFSI------AGDL----SSLATQIEELLPGIINRKERYHILALCYYG-------AGEDL---- 212 (446)
Q Consensus 170 ----------------~l~~------~~~~----~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-------~g~~~---- 212 (446)
+... .++. .+++..|++++..+|+++++|+.+|..+.. .|+++
T Consensus 221 ~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~ 300 (530)
T 2ooe_A 221 QNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKL 300 (530)
T ss_dssp C--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHH
T ss_pred CCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhh
Confidence 0000 0111 367789999999999999999999999987 79987
Q ss_pred ---HHHHHHHHHhcCC-CCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhh
Q 013299 213 ---VALNLLRTLLSGS-EDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVA 288 (446)
Q Consensus 213 ---eA~~~~~~al~~~-~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~ 288 (446)
+|+..|++++ . .+|+++.+++..+.+.. ..|++++|...|+++++. +|.. ...+|..+|.++..
T Consensus 301 ~~~~A~~~~~~Al--~~~~p~~~~l~~~~~~~~~-~~g~~~~A~~~~~~al~~-~p~~---~~~~~~~~~~~~~~----- 368 (530)
T 2ooe_A 301 FSDEAANIYERAI--STLLKKNMLLYFAYADYEE-SRMKYEKVHSIYNRLLAI-EDID---PTLVYIQYMKFARR----- 368 (530)
T ss_dssp HHHHHHHHHHHHT--TTTCSSCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHS-SSSC---HHHHHHHHHHHHHH-----
T ss_pred hhHHHHHHHHHHH--HHhCcccHHHHHHHHHHHH-hcCCHHHHHHHHHHHhCc-cccC---chHHHHHHHHHHHH-----
Confidence 9999999999 7 79999999988877654 468999999999999994 4432 13578888877644
Q ss_pred hchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccC
Q 013299 289 ITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLE-YAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKR 367 (446)
Q Consensus 289 ~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~-~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~ 367 (446)
.|++++|+..|++|+ +..|.++..+...+.+ +...|++++|...|+++++.+|++ ..+|..++.++..+|+
T Consensus 369 ------~~~~~~A~~~~~~Al-~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~-~~~~~~~~~~~~~~g~ 440 (530)
T 2ooe_A 369 ------AEGIKSGRMIFKKAR-EDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI-PEYVLAYIDYLSHLNE 440 (530)
T ss_dssp ------HHHHHHHHHHHHHHH-TCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHTTTTC
T ss_pred ------hcCHHHHHHHHHHHH-hccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCC-HHHHHHHHHHHHhCCC
Confidence 467899999999999 9999998888877766 346999999999999999999999 5999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCC--CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhccCCcchhhHHhhhhccccCC
Q 013299 368 YEDAETILNAALDQTGKW--EQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKVYFMRKRVSTKK 445 (446)
Q Consensus 368 ~~eA~~~~~~al~~~p~~--~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (446)
+++|..+|++++...|.+ ....+|..........|+.+.+...++++++..|+..+.. .+...-+|-++...-
T Consensus 441 ~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~~~~~~-----~~~~~~~r~~~~~~~ 515 (530)
T 2ooe_A 441 DNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGK-----ETALLVDRYKFMDLY 515 (530)
T ss_dssp HHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHHHHTTC-----HHHHHGGGTCBTTBC
T ss_pred HhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCchhccCc-----hHHHHHHHHHhcccC
Confidence 999999999999987621 1244787888889999999999999999999999654332 233444455555443
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-26 Score=228.17 Aligned_cols=314 Identities=12% Similarity=0.016 Sum_probs=245.8
Q ss_pred HHHHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHH
Q 013299 10 LEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRA 89 (446)
Q Consensus 10 ~~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~a 89 (446)
+.+++.+|.++...|++++|+..|+++++. .|... .....++..+|.++...|++++|+..|+++
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~--------~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 73 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQV--------GTEDL-------KTLSAIYSQLGNAYFYLHDYAKALEYHHHD 73 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCSCH-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhc--------CcccH-------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 456788999999999999999999999987 23321 123467888899999999999999999999
Q ss_pred hCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHH
Q 013299 90 LLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSF 169 (446)
Q Consensus 90 l~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~ 169 (446)
+.. .+. ....|..+.++..+|.
T Consensus 74 l~~----~~~------------------------------------------------------~~~~~~~~~~~~~la~ 95 (406)
T 3sf4_A 74 LTL----ART------------------------------------------------------IGDQLGEAKASGNLGN 95 (406)
T ss_dssp HHH----HHH------------------------------------------------------TTCHHHHHHHHHHHHH
T ss_pred HHH----HHh------------------------------------------------------ccccHHHHHHHHHHHH
Confidence 876 110 0001223556788999
Q ss_pred HHHhcCCHHHHHHHHHhhCCCCCCc------HHHHHHHHHHHHHCCC--------------------hHHHHHHHHHHhc
Q 013299 170 AFSIAGDLSSLATQIEELLPGIINR------KERYHILALCYYGAGE--------------------DLVALNLLRTLLS 223 (446)
Q Consensus 170 ~l~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~--------------------~~eA~~~~~~al~ 223 (446)
++...|++++|+..|++++.+.|.. +.+++.+|.++...|+ +++|+..|++++
T Consensus 96 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al- 174 (406)
T 3sf4_A 96 TLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENL- 174 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHH-
Confidence 9999999999999999998886654 4489999999999999 999999999988
Q ss_pred CCC------CCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCc-chhhhHHHHHhhchhHhhhhhhhchHHHHH
Q 013299 224 GSE------DPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGC-DQMESTANCLLGISLSAQSKVAITDFDRAT 296 (446)
Q Consensus 224 ~~~------~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~-~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~ 296 (446)
.+ .|....++..+|.++. ..|++++|+.+++++++..+... ......++..+|.++... |
T Consensus 175 -~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~-----------g 241 (406)
T 3sf4_A 175 -SLVTALGDRAAQGRAFGNLGNTHY-LLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFL-----------G 241 (406)
T ss_dssp -HHHHHTTCHHHHHHHHHHHHHHHH-HHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-----------T
T ss_pred -HHHHhccCcHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHc-----------C
Confidence 44 3333446666666654 46899999999999998654321 223456888899988664 5
Q ss_pred HHHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC-----HHHHHHHHHHHHHc
Q 013299 297 RQAKALQALVSAARSTNMRD------LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN-----LKGWLLMARILSAQ 365 (446)
Q Consensus 297 ~~~eAl~~~~~al~~~~P~~------~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~-----~~~~~~la~~~~~~ 365 (446)
++++|+..|++++ ++.|+. +.+++.+|.++...|++++|+.+|++++.+.+... ..++..+|.++..+
T Consensus 242 ~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~ 320 (406)
T 3sf4_A 242 EFETASEYYKKTL-LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTAL 320 (406)
T ss_dssp CHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHH-HHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHc
Confidence 7899999999999 998877 78999999999999999999999999999876541 36889999999999
Q ss_pred cCHHHHHHHHHHHHhhcCCC----CcHHHHHHHHHHHHHhCCHHHHHHHH
Q 013299 366 KRYEDAETILNAALDQTGKW----EQGELLRTKAKVQLVQGQLKGAVETY 411 (446)
Q Consensus 366 g~~~eA~~~~~~al~~~p~~----~~~~~~~~~a~~~~~~g~~~eA~~~~ 411 (446)
|++++|+.++++++++.+.. ....++..+|.++...|+...+...+
T Consensus 321 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~ 370 (406)
T 3sf4_A 321 GNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSI 370 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC----
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHHHHH
Confidence 99999999999999874311 34778899999999999885444333
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=2.5e-25 Score=208.31 Aligned_cols=250 Identities=10% Similarity=-0.030 Sum_probs=209.7
Q ss_pred ccccCCCcHHHHHHHHHHHHHHHHhhc----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHH
Q 013299 130 SSFVPRNNIEEAILLLMILLRKVALKR----IEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCY 205 (446)
Q Consensus 130 ~~~~~~~~~~eA~~~l~~~~~~~~l~~----~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 205 (446)
.....++++++|+..+ +.++.. .|.++.++..+|.++...|++++|+..|+++++.+|+++.+|+.+|.++
T Consensus 13 ~~~~~~~~~~~A~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 87 (275)
T 1xnf_A 13 VPLQPTLQQEVILARM-----EQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYL 87 (275)
T ss_dssp CCCCCCHHHHHHHHHH-----HHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred eccCccchHHHHHHHH-----HHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 4556678999999986 445555 3567889999999999999999999999999999999999999999999
Q ss_pred HHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhh
Q 013299 206 YGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQS 285 (446)
Q Consensus 206 ~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~ 285 (446)
...|++++|+..|++++ ..+|+++.++..+|.++.. .|++++|+.+++++++..|.+ ......++.++
T Consensus 88 ~~~~~~~~A~~~~~~al--~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~~-----~~~~~~~~~~~---- 155 (275)
T 1xnf_A 88 TQAGNFDAAYEAFDSVL--ELDPTYNYAHLNRGIALYY-GGRDKLAQDDLLAFYQDDPND-----PFRSLWLYLAE---- 155 (275)
T ss_dssp HHTTCHHHHHHHHHHHH--HHCTTCTHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHH----
T ss_pred HHccCHHHHHHHHHHHH--hcCccccHHHHHHHHHHHH-hccHHHHHHHHHHHHHhCCCC-----hHHHHHHHHHH----
Confidence 99999999999999999 8999999999988877655 799999999999999965544 22333333332
Q ss_pred hhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC---HHHHHHHHHHH
Q 013299 286 KVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN---LKGWLLMARIL 362 (446)
Q Consensus 286 ~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~---~~~~~~la~~~ 362 (446)
..|++++|+..|++++ ...|++...+. ++.++...++.++|+..+++++..+|... ..+|..+|.++
T Consensus 156 --------~~~~~~~A~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 225 (275)
T 1xnf_A 156 --------QKLDEKQAKEVLKQHF-EKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYY 225 (275)
T ss_dssp --------HHHCHHHHHHHHHHHH-HHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHH
T ss_pred --------HhcCHHHHHHHHHHHH-hcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHH
Confidence 2467999999999999 99999977655 77777888999999999999999887430 38899999999
Q ss_pred HHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHH
Q 013299 363 SAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETY 411 (446)
Q Consensus 363 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~ 411 (446)
..+|++++|+.++++++..+| ++.. ..+.++...|++++|++.|
T Consensus 226 ~~~g~~~~A~~~~~~al~~~p--~~~~---~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 226 LSLGDLDSATALFKLAVANNV--HNFV---EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHTTCHHHHHHHHHHHHTTCC--TTCH---HHHHHHHHHHHHHHC----
T ss_pred HHcCCHHHHHHHHHHHHhCCc--hhHH---HHHHHHHHHHHHHhhHHHH
Confidence 999999999999999999999 5544 3477888999999999988
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=4.1e-25 Score=202.99 Aligned_cols=221 Identities=16% Similarity=0.086 Sum_probs=172.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHH
Q 013299 159 WDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIAS 238 (446)
Q Consensus 159 ~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~ 238 (446)
..+..+..+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++ ..+|+++.++..++
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKAL--ELDSSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HcCCcchHHHHHHH
Confidence 3567888999999999999999999999999999999999999999999999999999999999 89999999988887
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHH
Q 013299 239 KICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLS 318 (446)
Q Consensus 239 ~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~ 318 (446)
.++.. .|++++|+.+++++++..+.+ ..++..+|.++... |++++|+..|++++ +.+|+++.
T Consensus 99 ~~~~~-~~~~~~A~~~~~~~~~~~~~~-----~~~~~~~a~~~~~~-----------~~~~~A~~~~~~~~-~~~~~~~~ 160 (243)
T 2q7f_A 99 NVYVV-KEMYKEAKDMFEKALRAGMEN-----GDLFYMLGTVLVKL-----------EQPKLALPYLQRAV-ELNENDTE 160 (243)
T ss_dssp HHHHH-TTCHHHHHHHHHHHHHHTCCS-----HHHHHHHHHHHHHT-----------SCHHHHHHHHHHHH-HHCTTCHH
T ss_pred HHHHH-hccHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHh-----------ccHHHHHHHHHHHH-HhCCccHH
Confidence 77554 688999999999999865443 46788888888654 56889999999999 99999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHH
Q 013299 319 ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQ 398 (446)
Q Consensus 319 a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~ 398 (446)
+++.+|.++...|++++|+..+++++..+|++ ..+|..+|.++..+|++++|+.+++++++.+| ++..++..++.+.
T Consensus 161 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~~~~l~ 237 (243)
T 2q7f_A 161 ARFQFGMCLANEGMLDEALSQFAAVTEQDPGH-ADAFYNAGVTYAYKENREKALEMLDKAIDIQP--DHMLALHAKKLLG 237 (243)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCT--TCHHHHHHHTC--
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHccCHHHHHHHHHHHHccCc--chHHHHHHHHHHH
Confidence 99999999999999999999999999999998 48999999999999999999999999999999 8888888877766
Q ss_pred HHhC
Q 013299 399 LVQG 402 (446)
Q Consensus 399 ~~~g 402 (446)
...|
T Consensus 238 ~~~~ 241 (243)
T 2q7f_A 238 HHHH 241 (243)
T ss_dssp ----
T ss_pred hhcc
Confidence 5444
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.93 E-value=5.9e-25 Score=194.28 Aligned_cols=171 Identities=16% Similarity=0.153 Sum_probs=131.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHH
Q 013299 158 EWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIA 237 (446)
Q Consensus 158 p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~ 237 (446)
.+++.+|+++|.++...|++++|++.|+++++++|+++.+|+.+|.++...|++++|+..+++++ ..+|+++.++...
T Consensus 2 ge~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~~~~ 79 (184)
T 3vtx_A 2 GETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFV--VLDTTSAEAYYIL 79 (184)
T ss_dssp --CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCCCCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH--hcCchhHHHHHHH
Confidence 35667777777777777777777777777777777777777777777777777777777777777 6777776665544
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCH
Q 013299 238 SKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDL 317 (446)
Q Consensus 238 ~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~ 317 (446)
+.++.. .+++++|+..+.+++ .++|+++
T Consensus 80 ~~~~~~---------------------------------------------------~~~~~~a~~~~~~a~-~~~~~~~ 107 (184)
T 3vtx_A 80 GSANFM---------------------------------------------------IDEKQAAIDALQRAI-ALNTVYA 107 (184)
T ss_dssp HHHHHH---------------------------------------------------TTCHHHHHHHHHHHH-HHCTTCH
T ss_pred HHHHHH---------------------------------------------------cCCHHHHHHHHHHHH-HhCccch
Confidence 333211 134567778888888 8888888
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013299 318 SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTG 383 (446)
Q Consensus 318 ~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 383 (446)
.+++.+|.++..+|++++|+..|+++++++|++ ..+|.++|.++..+|++++|+.+|++|++++|
T Consensus 108 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 172 (184)
T 3vtx_A 108 DAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGF-IRAYQSIGLAYEGKGLRDEAVKYFKKALEKEE 172 (184)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHhCCchhHHHHHHHHHHhcchh-hhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCc
Confidence 888888888888888888888888888888888 48888888888888888888888888888888
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.9e-25 Score=224.59 Aligned_cols=223 Identities=13% Similarity=0.075 Sum_probs=192.2
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHH
Q 013299 138 IEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDL-SSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALN 216 (446)
Q Consensus 138 ~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~-~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~ 216 (446)
+++++..+ +......|.++.++..+|.++...|++ ++|+++|+++++++|+++++|+.+|.+|...|++++|+.
T Consensus 84 ~~~al~~l-----~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~ 158 (474)
T 4abn_A 84 MEKTLQQM-----EEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHT 158 (474)
T ss_dssp HHHHHHHH-----HHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHH-----HHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 44555443 345667788899999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHH
Q 013299 217 LLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRAT 296 (446)
Q Consensus 217 ~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~ 296 (446)
.|++++ .++|+ ..++..+|.++..... .. . .++.|
T Consensus 159 ~~~~al--~~~p~-~~~~~~lg~~~~~~~~-----------------~~--------------~-----------~~~~g 193 (474)
T 4abn_A 159 CFSGAL--THCKN-KVSLQNLSMVLRQLQT-----------------DS--------------G-----------DEHSR 193 (474)
T ss_dssp HHHHHH--TTCCC-HHHHHHHHHHHTTCCC-----------------SC--------------H-----------HHHHH
T ss_pred HHHHHH--hhCCC-HHHHHHHHHHHHHhcc-----------------CC--------------h-----------hhhhh
Confidence 999999 88888 5677766655433110 00 0 02346
Q ss_pred HHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHhhcC---CCCHHHHHHHHHHHHHc
Q 013299 297 RQAKALQALVSAARSTNMRDLSILYRLSLEYAEQ--------RKLNAAHYYAKMLLKLEG---GSNLKGWLLMARILSAQ 365 (446)
Q Consensus 297 ~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~--------~~~~~A~~~~~~al~l~P---~~~~~~~~~la~~~~~~ 365 (446)
++++|+..|++++ +++|+++.+|+++|.++..+ |++++|+..|+++++++| ++ ..+|.++|.++..+
T Consensus 194 ~~~~A~~~~~~al-~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~~~~lg~~~~~~ 271 (474)
T 4abn_A 194 HVMDSVRQAKLAV-QMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSN-PDLHLNRATLHKYE 271 (474)
T ss_dssp HHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGC-HHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccC-HHHHHHHHHHHHHc
Confidence 7899999999999 99999999999999999999 999999999999999999 88 59999999999999
Q ss_pred cCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 013299 366 KRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHL 414 (446)
Q Consensus 366 g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~ 414 (446)
|++++|+.+|+++++++| ++..++..++.++...|++++|++.+.++
T Consensus 272 g~~~~A~~~~~~al~l~p--~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 272 ESYGEALEGFSQAAALDP--AWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp TCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999 89999999999999999999999988655
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-25 Score=220.77 Aligned_cols=283 Identities=14% Similarity=0.011 Sum_probs=231.6
Q ss_pred HHHHHhHHHHHHhCChHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHH
Q 013299 64 RAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAIL 143 (446)
Q Consensus 64 ~a~~~l~~~~~~~g~~~eA~~~y~~al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~ 143 (446)
.++...|.++...|++++|+..|+++++. .|.+..
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~----~~~~~~----------------------------------------- 44 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQV----GTEDLK----------------------------------------- 44 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CCSCHH-----------------------------------------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhc----CcccHH-----------------------------------------
Confidence 35667788899999999999999999887 332110
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCC------CCCcHHHHHHHHHHHHHCCChHHHHHH
Q 013299 144 LLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPG------IINRKERYHILALCYYGAGEDLVALNL 217 (446)
Q Consensus 144 ~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~eA~~~ 217 (446)
.-..++..+|.++...|++++|+..|++++.+ .|..+.+++.+|.++...|++++|+..
T Consensus 45 ---------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 109 (406)
T 3sf4_A 45 ---------------TLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVC 109 (406)
T ss_dssp ---------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ---------------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 00245678899999999999999999998776 566688999999999999999999999
Q ss_pred HHHHhcCCCCCCC------hHHHHHHHHHHhcCCCC--------------------HHHHHHHHHHHHHHcCC-Ccchhh
Q 013299 218 LRTLLSGSEDPKC------LPALLIASKICGEYPDL--------------------AEEGATFASRALECLGD-GCDQME 270 (446)
Q Consensus 218 ~~~al~~~~~P~~------~~a~~~~~~~~~~~~~~--------------------~~eA~~~~~~al~~~~~-~~~~~~ 270 (446)
+++++ .+.|+. ..++..+|.++.. .|+ +++|+.+++++++.... .+....
T Consensus 110 ~~~al--~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~ 186 (406)
T 3sf4_A 110 CQRHL--DISRELNDKVGEARALYNLGNVYHA-KGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQ 186 (406)
T ss_dssp HHHHH--HHHHHHTCHHHHHHHHHHHHHHHHH-HHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHH--HHHHhcccccchHHHHHHHHHHHHH-cCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHH
Confidence 99999 676653 3366666666544 688 99999999999886432 122344
Q ss_pred hHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013299 271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLS------ILYRLSLEYAEQRKLNAAHYYAKMLL 344 (446)
Q Consensus 271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~------a~~~lg~~~~~~~~~~~A~~~~~~al 344 (446)
..++..+|.++... |++++|+..|++++ ++.|+... +++++|.++..+|++++|+.++++++
T Consensus 187 ~~~~~~la~~~~~~-----------g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 254 (406)
T 3sf4_A 187 GRAFGNLGNTHYLL-----------GNFRDAVIAHEQRL-LIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 254 (406)
T ss_dssp HHHHHHHHHHHHHH-----------TBHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-----------cCHHHHHHHHHHHH-HHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 67888899988664 57899999999999 98776654 89999999999999999999999999
Q ss_pred hhcCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCC----cHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 013299 345 KLEGGSN-----LKGWLLMARILSAQKRYEDAETILNAALDQTGKWE----QGELLRTKAKVQLVQGQLKGAVETYTHLL 415 (446)
Q Consensus 345 ~l~P~~~-----~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~----~~~~~~~~a~~~~~~g~~~eA~~~~~~~l 415 (446)
.+.|+.. ..++..+|.++..+|++++|+.+++++++..++.. ...++..+|.++..+|++++|+..|++++
T Consensus 255 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 334 (406)
T 3sf4_A 255 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 334 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9987651 26888999999999999999999999998865211 26788999999999999999999999999
Q ss_pred HHHhhh
Q 013299 416 AALQVQ 421 (446)
Q Consensus 416 ~l~~~~ 421 (446)
++.+..
T Consensus 335 ~~~~~~ 340 (406)
T 3sf4_A 335 EISREV 340 (406)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 998653
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.93 E-value=7.8e-26 Score=224.97 Aligned_cols=285 Identities=13% Similarity=-0.009 Sum_probs=216.7
Q ss_pred HHHHHHhHHHHHHhCChHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHH
Q 013299 63 NRAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAI 142 (446)
Q Consensus 63 ~~a~~~l~~~~~~~g~~~eA~~~y~~al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~ 142 (446)
...+..+|..+...|++++|+..|+++++. +|.+...
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~----~~~~~~~--------------------------------------- 84 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQA----GTEDLRT--------------------------------------- 84 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CCSCHHH---------------------------------------
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHh----cccChhH---------------------------------------
Confidence 345566778888888888888888888876 3321100
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCC------CCCcHHHHHHHHHHHHHCCChHHHHH
Q 013299 143 LLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPG------IINRKERYHILALCYYGAGEDLVALN 216 (446)
Q Consensus 143 ~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~eA~~ 216 (446)
-..++..+|.++...|++++|+..|++++.+ .|....+++.+|.++...|++++|+.
T Consensus 85 -----------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 147 (411)
T 4a1s_A 85 -----------------LSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAI 147 (411)
T ss_dssp -----------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred -----------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 0134566777777777777777777777766 56667777778888888888888888
Q ss_pred HHHHHhcCCC------CCCChHHHHHHHHHHhcCCCC-----------------HHHHHHHHHHHHHHcCC-CcchhhhH
Q 013299 217 LLRTLLSGSE------DPKCLPALLIASKICGEYPDL-----------------AEEGATFASRALECLGD-GCDQMEST 272 (446)
Q Consensus 217 ~~~~al~~~~------~P~~~~a~~~~~~~~~~~~~~-----------------~~eA~~~~~~al~~~~~-~~~~~~~~ 272 (446)
.|++++ .+ .|....++..+|.++.. .|+ +++|+.+++++++..+. ........
T Consensus 148 ~~~~al--~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 224 (411)
T 4a1s_A 148 CCERHL--TLARQLGDRLSEGRALYNLGNVYHA-KGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGR 224 (411)
T ss_dssp HHHHHH--HHHHHHTCHHHHHHHHHHHHHHHHH-HHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHH--HHHHHhhchHHHHHHHHHHHHHHHH-cCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 777777 55 44455566666655443 566 77888888887775321 11123456
Q ss_pred HHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 013299 273 ANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLS------ILYRLSLEYAEQRKLNAAHYYAKMLLKL 346 (446)
Q Consensus 273 a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~------a~~~lg~~~~~~~~~~~A~~~~~~al~l 346 (446)
++..+|.++... |++++|+.+|++++ ++.|++.. +++++|.++..+|++++|+.+|++++.+
T Consensus 225 ~~~~la~~~~~~-----------g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 292 (411)
T 4a1s_A 225 ACGNLGNTYYLL-----------GDFQAAIEHHQERL-RIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL 292 (411)
T ss_dssp HHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-----------CChHHHHHHHHHHH-HHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 888899988664 57899999999999 98876544 8999999999999999999999999999
Q ss_pred cCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCC----CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 013299 347 EGGSN-----LKGWLLMARILSAQKRYEDAETILNAALDQTGKW----EQGELLRTKAKVQLVQGQLKGAVETYTHLLAA 417 (446)
Q Consensus 347 ~P~~~-----~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~----~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l 417 (446)
.|+.. ..++..+|.++..+|++++|+.++++++...++. ....+++.+|.++..+|++++|+..|++++++
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 293 AVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 88531 3788999999999999999999999999875510 22568899999999999999999999999999
Q ss_pred Hhhhh
Q 013299 418 LQVQT 422 (446)
Q Consensus 418 ~~~~~ 422 (446)
.+...
T Consensus 373 ~~~~~ 377 (411)
T 4a1s_A 373 AXXXX 377 (411)
T ss_dssp CCHHH
T ss_pred Hhhcc
Confidence 87643
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-23 Score=197.10 Aligned_cols=235 Identities=14% Similarity=0.064 Sum_probs=205.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH----CCChHHHHHHHHHHhcCCCCCCChH
Q 013299 157 IEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYG----AGEDLVALNLLRTLLSGSEDPKCLP 232 (446)
Q Consensus 157 ~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~eA~~~~~~al~~~~~P~~~~ 232 (446)
.|.++.+++.+|.++...|++++|+.+|+++++ |+++.+++++|.++.. .|++++|+..|++++ ..+ ++.
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~--~~~--~~~ 75 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKAC--DLN--YSN 75 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH--HTT--CHH
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHH--HCC--CHH
Confidence 478999999999999999999999999999998 8899999999999999 999999999999999 554 788
Q ss_pred HHHHHHHHHhc---CCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHH
Q 013299 233 ALLIASKICGE---YPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAA 309 (446)
Q Consensus 233 a~~~~~~~~~~---~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al 309 (446)
+++.+|.++.. ..+++++|+.+|+++++. . + +.+++.+|.+|.... ...+++++|+.+|++++
T Consensus 76 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-~-~-----~~a~~~lg~~~~~~~-------~~~~~~~~A~~~~~~a~ 141 (273)
T 1ouv_A 76 GCHLLGNLYYSGQGVSQNTNKALQYYSKACDL-K-Y-----AEGCASLGGIYHDGK-------VVTRDFKKAVEYFTKAC 141 (273)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T-C-----HHHHHHHHHHHHHCS-------SSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc-C-C-----ccHHHHHHHHHHcCC-------CcccCHHHHHHHHHHHH
Confidence 88888877554 168999999999999984 2 2 578999999986500 00246899999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhh
Q 013299 310 RSTNMRDLSILYRLSLEYAE----QRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSA----QKRYEDAETILNAALDQ 381 (446)
Q Consensus 310 ~~~~P~~~~a~~~lg~~~~~----~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~~ 381 (446)
+.+ ++.+++++|.++.. .+++++|+.+|+++++. ++ ..++..+|.++.. .+++++|+.+++++++.
T Consensus 142 -~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~-~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~ 215 (273)
T 1ouv_A 142 -DLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--KD-SPGCFNAGNMYHHGEGATKNFKEALARYSKACEL 215 (273)
T ss_dssp -HTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TC-HHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT
T ss_pred -hcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CC-HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhC
Confidence 876 78999999999999 99999999999999987 45 4899999999999 99999999999999987
Q ss_pred cCCCCcHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHhhh
Q 013299 382 TGKWEQGELLRTKAKVQLV----QGQLKGAVETYTHLLAALQVQ 421 (446)
Q Consensus 382 ~p~~~~~~~~~~~a~~~~~----~g~~~eA~~~~~~~l~l~~~~ 421 (446)
.| ..+++++|.++.. .|++++|++.|++++++.|..
T Consensus 216 ~~----~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 216 EN----GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp TC----HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred CC----HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 55 6789999999999 999999999999999997643
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-23 Score=202.29 Aligned_cols=243 Identities=12% Similarity=-0.003 Sum_probs=149.4
Q ss_pred HHHHHHHHhhCCCCCCcHHHHHHHHHHHHH-------CCCh-------HHHHHHHHHHhcCC-CCCCChHHHHHHHHHHh
Q 013299 178 SSLATQIEELLPGIINRKERYHILALCYYG-------AGED-------LVALNLLRTLLSGS-EDPKCLPALLIASKICG 242 (446)
Q Consensus 178 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-------~g~~-------~eA~~~~~~al~~~-~~P~~~~a~~~~~~~~~ 242 (446)
++|+..|++++..+|+++++|+++|..+.. .|++ ++|+..|++++ . ++|++..++...+.+..
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl--~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAI--STLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHH--TTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHH--HHhCcccHHHHHHHHHHHH
Confidence 344555555555555555555555555442 3443 55555555555 4 45555555554444332
Q ss_pred cCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHH
Q 013299 243 EYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYR 322 (446)
Q Consensus 243 ~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~ 322 (446)
..|++++|...|+++++. +|... ..+|..+|.++.. .|++++|+..|++++ +.+|.++.++..
T Consensus 111 -~~~~~~~A~~~~~~al~~-~p~~~---~~~~~~~~~~~~~-----------~~~~~~A~~~~~~a~-~~~p~~~~~~~~ 173 (308)
T 2ond_A 111 -SRMKYEKVHSIYNRLLAI-EDIDP---TLVYIQYMKFARR-----------AEGIKSGRMIFKKAR-EDARTRHHVYVT 173 (308)
T ss_dssp -HTTCHHHHHHHHHHHHTS-SSSCT---HHHHHHHHHHHHH-----------HHCHHHHHHHHHHHH-TSTTCCTHHHHH
T ss_pred -hcCCHHHHHHHHHHHHhc-cccCc---cHHHHHHHHHHHH-----------hcCHHHHHHHHHHHH-hcCCCCHHHHHH
Confidence 234555555555555552 22210 1145555555433 345777888888888 788877777766
Q ss_pred HHHHHHH-cCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh---cCCCCcHHHHHHHHHHH
Q 013299 323 LSLEYAE-QRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQ---TGKWEQGELLRTKAKVQ 398 (446)
Q Consensus 323 lg~~~~~-~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~---~p~~~~~~~~~~~a~~~ 398 (446)
.+.+... .|++++|+..|+++++++|++ ..+|..+|.++..+|++++|...|++++.. .|+ +...+|...+..+
T Consensus 174 ~a~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~-~~~~l~~~~~~~~ 251 (308)
T 2ond_A 174 AALMEYYCSKDKSVAFKIFELGLKKYGDI-PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE-KSGEIWARFLAFE 251 (308)
T ss_dssp HHHHHHHTSCCHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGG-GCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHH-HHHHHHHHHHHHH
Confidence 6655443 578888888888888888887 488888888888888888888888888874 441 2566777777888
Q ss_pred HHhCCHHHHHHHHHHHHHHHhhhhhhccCCcchhhHHhhhhccccCCC
Q 013299 399 LVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKVYFMRKRVSTKKP 446 (446)
Q Consensus 399 ~~~g~~~eA~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (446)
...|++++|...+++++++.|+..+.. ...+...+-++....|
T Consensus 252 ~~~g~~~~a~~~~~~a~~~~p~~~~~~-----~~~~~~~r~~~l~~~P 294 (308)
T 2ond_A 252 SNIGDLASILKVEKRRFTAFREEYEGK-----ETALLVDRYKFMDLYP 294 (308)
T ss_dssp HHHSCHHHHHHHHHHHHHHTTTTTSSC-----HHHHHHTTTCBTTBCS
T ss_pred HHcCCHHHHHHHHHHHHHHcccccccc-----hHHHHHHHHHhcccCC
Confidence 888888888888888888877644322 2244455555555444
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.93 E-value=4.7e-24 Score=188.49 Aligned_cols=173 Identities=12% Similarity=0.052 Sum_probs=157.4
Q ss_pred CcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhH
Q 013299 193 NRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMEST 272 (446)
Q Consensus 193 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~ 272 (446)
+++.+|+++|.++...|++++|+..|++++ +++|+++.++..+|.++..
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al--~~~p~~~~~~~~la~~~~~----------------------------- 51 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVL--KADPNNVETLLKLGKTYMD----------------------------- 51 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHH-----------------------------
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHH-----------------------------
Confidence 578899999999999999999999999999 8999998877766544322
Q ss_pred HHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCH
Q 013299 273 ANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNL 352 (446)
Q Consensus 273 a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~ 352 (446)
.|++++|+..+++++ ..+|+++.++..+|.++...++++.|+..+.+++.++|++ .
T Consensus 52 ----------------------~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~-~ 107 (184)
T 3vtx_A 52 ----------------------IGLPNDAIESLKKFV-VLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVY-A 107 (184)
T ss_dssp ----------------------TTCHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-H
T ss_pred ----------------------CCCHHHHHHHHHHHH-hcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-h
Confidence 134678889999999 9999999999999999999999999999999999999999 5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhh
Q 013299 353 KGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQT 422 (446)
Q Consensus 353 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~ 422 (446)
.++..+|.++..+|++++|+..|+++++.+| +++.+++++|.++..+|++++|++.|++++++.|++.
T Consensus 108 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 108 DAYYKLGLVYDSMGEHDKAIEAYEKTISIKP--GFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHhCCchhHHHHHHHHHHhcc--hhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCH
Confidence 9999999999999999999999999999999 8999999999999999999999999999999987653
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-23 Score=190.61 Aligned_cols=218 Identities=17% Similarity=0.023 Sum_probs=194.5
Q ss_pred cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHH
Q 013299 156 RIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALL 235 (446)
Q Consensus 156 ~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~ 235 (446)
..|+++.++..+|.++...|++++|++.|++++..+|+++.+|+.+|.++...|++++|+..|++++ ..+|+++.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~--~~~~~~~~~~~ 80 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQAL--SIKPDSAEINN 80 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHH--HhCCCChHHHH
Confidence 4588899999999999999999999999999999999999999999999999999999999999999 89999999988
Q ss_pred HHHHHHhcCC-CCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCC
Q 013299 236 IASKICGEYP-DLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNM 314 (446)
Q Consensus 236 ~~~~~~~~~~-~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P 314 (446)
.++.++. .. |++++|+.+++++++ .+.++ ....++..+|.++... |++++|+..|++++ +.+|
T Consensus 81 ~l~~~~~-~~~~~~~~A~~~~~~~~~-~~~~~--~~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~~~-~~~~ 144 (225)
T 2vq2_A 81 NYGWFLC-GRLNRPAESMAYFDKALA-DPTYP--TPYIANLNKGICSAKQ-----------GQFGLAEAYLKRSL-AAQP 144 (225)
T ss_dssp HHHHHHH-TTTCCHHHHHHHHHHHHT-STTCS--CHHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHST
T ss_pred HHHHHHH-HhcCcHHHHHHHHHHHHc-CcCCc--chHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-HhCC
Confidence 8877654 57 899999999999998 33222 2357888899988664 56899999999999 9999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHH
Q 013299 315 RDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEG-GSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRT 393 (446)
Q Consensus 315 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P-~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~ 393 (446)
+++.+++.+|.++...|++++|+..+++++.++| ++ ..++..++.++...|++++|..+++.+++.+| ++..+...
T Consensus 145 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p--~~~~~~~~ 221 (225)
T 2vq2_A 145 QFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQ-ADDLLLGWKIAKALGNAQAAYEYEAQLQANFP--YSEELQTV 221 (225)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHH
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC--CCHHHHHH
Confidence 9999999999999999999999999999999999 88 48899999999999999999999999999999 78776654
Q ss_pred H
Q 013299 394 K 394 (446)
Q Consensus 394 ~ 394 (446)
+
T Consensus 222 l 222 (225)
T 2vq2_A 222 L 222 (225)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.92 E-value=7.3e-25 Score=209.78 Aligned_cols=281 Identities=14% Similarity=0.012 Sum_probs=203.9
Q ss_pred HHHHhHHHHHHhCChHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHH
Q 013299 65 AVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILL 144 (446)
Q Consensus 65 a~~~l~~~~~~~g~~~eA~~~y~~al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~ 144 (446)
.+...|..+...|++++|+..|+++++. +|.+...
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~----~~~~~~~----------------------------------------- 41 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQV----GTEDLKT----------------------------------------- 41 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH----CCSCHHH-----------------------------------------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhh----CcccHHH-----------------------------------------
Confidence 4556678889999999999999999887 3322100
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCC------CCCcHHHHHHHHHHHHHCCChHHHHHHH
Q 013299 145 LMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPG------IINRKERYHILALCYYGAGEDLVALNLL 218 (446)
Q Consensus 145 l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~eA~~~~ 218 (446)
...++..+|.++...|++++|++.|++++.+ .|..+.++..+|.++...|++++|+..+
T Consensus 42 ---------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 106 (338)
T 3ro2_A 42 ---------------LSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCC 106 (338)
T ss_dssp ---------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ---------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 0224455666666666666666666666555 4445566777777777777777777777
Q ss_pred HHHhcCCCCCCC------hHHHHHHHHHHhcCCCC--------------------HHHHHHHHHHHHHHcCC-Ccchhhh
Q 013299 219 RTLLSGSEDPKC------LPALLIASKICGEYPDL--------------------AEEGATFASRALECLGD-GCDQMES 271 (446)
Q Consensus 219 ~~al~~~~~P~~------~~a~~~~~~~~~~~~~~--------------------~~eA~~~~~~al~~~~~-~~~~~~~ 271 (446)
++++ .+.|+. ..++..++.++.. .|+ +++|+.+++++++.... .+.....
T Consensus 107 ~~al--~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 183 (338)
T 3ro2_A 107 QRHL--DISRELNDKVGEARALYNLGNVYHA-KGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQG 183 (338)
T ss_dssp HHHH--HHHHHTTCHHHHHHHHHHHHHHHHH-HHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHH--HHHHHhcCchHHHHHHHHHHHHHHH-cCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 7766 444432 1244444444333 455 77777777777764321 1122345
Q ss_pred HHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 013299 272 TANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLS------ILYRLSLEYAEQRKLNAAHYYAKMLLK 345 (446)
Q Consensus 272 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~------a~~~lg~~~~~~~~~~~A~~~~~~al~ 345 (446)
.++..+|.++... |++++|+..+++++ ++.|.... +++++|.++...|++++|+..+++++.
T Consensus 184 ~~~~~l~~~~~~~-----------~~~~~A~~~~~~a~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 251 (338)
T 3ro2_A 184 RAFGNLGNTHYLL-----------GNFRDAVIAHEQRL-LIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLL 251 (338)
T ss_dssp HHHHHHHHHHHHH-----------TCHHHHHHHHHHHH-HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-----------CCHHHHHHHHHHHH-HHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6788888888654 57899999999999 88765433 899999999999999999999999999
Q ss_pred hcCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCC----CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 013299 346 LEGGSN-----LKGWLLMARILSAQKRYEDAETILNAALDQTGKW----EQGELLRTKAKVQLVQGQLKGAVETYTHLLA 416 (446)
Q Consensus 346 l~P~~~-----~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~----~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~ 416 (446)
+.|+.. ..++..+|.++..+|++++|+.+++++++..|.. ....++..+|.++...|++++|+..|+++++
T Consensus 252 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 252 LARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 877641 2688899999999999999999999999876511 1256888999999999999999999999999
Q ss_pred HHhh
Q 013299 417 ALQV 420 (446)
Q Consensus 417 l~~~ 420 (446)
+.++
T Consensus 332 ~~~~ 335 (338)
T 3ro2_A 332 ISRE 335 (338)
T ss_dssp C---
T ss_pred HHHh
Confidence 8864
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=5.9e-24 Score=195.21 Aligned_cols=218 Identities=12% Similarity=0.063 Sum_probs=177.3
Q ss_pred cHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHH
Q 013299 194 RKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTA 273 (446)
Q Consensus 194 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a 273 (446)
.+.+|+.+|.++...|++++|+..|++++ ..+|+++.++..++.++.. .|++++|+..++++++..+.+ ..+
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l--~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~~~~-----~~~ 93 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAI--EENKEDAIPYINFANLLSS-VNELERALAFYDKALELDSSA-----ATA 93 (243)
T ss_dssp --------------------CCTTHHHHH--TTCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTC-----HHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHH--HhCcccHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCcc-----hHH
Confidence 45678999999999999999999999999 8999999999988877654 789999999999999965443 578
Q ss_pred HHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHH
Q 013299 274 NCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLK 353 (446)
Q Consensus 274 ~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~ 353 (446)
+..+|.++... |++++|+..|++++ +.+|+++.+++.+|.++...|++++|+..+++++.++|++ ..
T Consensus 94 ~~~la~~~~~~-----------~~~~~A~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~ 160 (243)
T 2q7f_A 94 YYGAGNVYVVK-----------EMYKEAKDMFEKAL-RAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEND-TE 160 (243)
T ss_dssp HHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC-HH
T ss_pred HHHHHHHHHHh-----------ccHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc-HH
Confidence 88999988664 57899999999999 9999999999999999999999999999999999999999 59
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhccCCcchhh
Q 013299 354 GWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYK 433 (446)
Q Consensus 354 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~~~~~~~~~~ 433 (446)
++..+|.++...|++++|+.+++++++..| ++..+++.+|.++...|++++|+..|++++++. |....
T Consensus 161 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~----------p~~~~ 228 (243)
T 2q7f_A 161 ARFQFGMCLANEGMLDEALSQFAAVTEQDP--GHADAFYNAGVTYAYKENREKALEMLDKAIDIQ----------PDHML 228 (243)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC----------TTCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC----------cchHH
Confidence 999999999999999999999999999999 899999999999999999999999999999997 55566
Q ss_pred HHhhhhccccC
Q 013299 434 VYFMRKRVSTK 444 (446)
Q Consensus 434 ~~~~~~~~~~~ 444 (446)
+++.+.++...
T Consensus 229 ~~~~~~~l~~~ 239 (243)
T 2q7f_A 229 ALHAKKLLGHH 239 (243)
T ss_dssp HHHHHTC----
T ss_pred HHHHHHHHHhh
Confidence 66666665543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.92 E-value=8.7e-24 Score=195.76 Aligned_cols=216 Identities=14% Similarity=0.024 Sum_probs=163.3
Q ss_pred cCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHH
Q 013299 156 RIEWD-PSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPAL 234 (446)
Q Consensus 156 ~~p~~-~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~ 234 (446)
.+|.+ +.++..+|.++...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|++++ ..+|+++.++
T Consensus 31 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~--~~~~~~~~~~ 108 (252)
T 2ho1_A 31 KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKAL--ASDSRNARVL 108 (252)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCHHHH
T ss_pred cchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHCcCcHHHH
Confidence 44555 77889999999999999999999999999999999999999999999999999999999999 7889888888
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCC
Q 013299 235 LIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNM 314 (446)
Q Consensus 235 ~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P 314 (446)
..++.++.. .|++++|+.+++++++ .+..+ ....++..+|.++... |++++|+..|++++ +.+|
T Consensus 109 ~~la~~~~~-~g~~~~A~~~~~~~~~-~~~~~--~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~~~-~~~~ 172 (252)
T 2ho1_A 109 NNYGGFLYE-QKRYEEAYQRLLEASQ-DTLYP--ERSRVFENLGLVSLQM-----------KKPAQAKEYFEKSL-RLNR 172 (252)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHTT-CTTCT--THHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHCS
T ss_pred HHHHHHHHH-HhHHHHHHHHHHHHHh-CccCc--ccHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-hcCc
Confidence 777666544 5777777777777776 11111 1245666677666543 45677777777777 7777
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHH
Q 013299 315 RDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLR 392 (446)
Q Consensus 315 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~ 392 (446)
+++.+++.+|.++...|++++|+..+++++..+|++ ..++..++.++...|++++|..+++++++..| ++..++.
T Consensus 173 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~ 247 (252)
T 2ho1_A 173 NQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQN-ARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP--GSLEYQE 247 (252)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TSHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC--CCHHHHH
Confidence 777777777777777777777777777777777776 47777777777777777777777777777777 5655443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.1e-23 Score=193.13 Aligned_cols=212 Identities=19% Similarity=0.109 Sum_probs=193.9
Q ss_pred CCCCCc-HHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcc
Q 013299 189 PGIINR-KERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCD 267 (446)
Q Consensus 189 ~~~p~~-~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~ 267 (446)
..+|.+ +.+|+.+|.++...|++++|+..|++++ ..+|+++.++..++.++.. .|++++|+.+++++++..|.+
T Consensus 30 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al--~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~a~~~~~~~-- 104 (252)
T 2ho1_A 30 DKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKAL--EIDPSSADAHAALAVVFQT-EMEPKLADEEYRKALASDSRN-- 104 (252)
T ss_dssp -CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHH--HHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTC--
T ss_pred ccchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH--hcCCChHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCc--
Confidence 456776 8899999999999999999999999999 8999999999988877655 789999999999999965443
Q ss_pred hhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 013299 268 QMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARS--TNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLK 345 (446)
Q Consensus 268 ~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~--~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~ 345 (446)
..++..+|.++... |++++|+..|++++ . .+|.++.+++.+|.++...|++++|+..+++++.
T Consensus 105 ---~~~~~~la~~~~~~-----------g~~~~A~~~~~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 169 (252)
T 2ho1_A 105 ---ARVLNNYGGFLYEQ-----------KRYEEAYQRLLEAS-QDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLR 169 (252)
T ss_dssp ---HHHHHHHHHHHHHT-----------TCHHHHHHHHHHHT-TCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHH-----------hHHHHHHHHHHHHH-hCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 57889999988664 57899999999999 9 8899999999999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhh
Q 013299 346 LEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTK 423 (446)
Q Consensus 346 l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~ 423 (446)
++|++ ..++..+|.++..+|++++|+.+++++++..| ++..++..++.++...|++++|...+++++++.|++..
T Consensus 170 ~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 244 (252)
T 2ho1_A 170 LNRNQ-PSVALEMADLLYKEREYVPARQYYDLFAQGGG--QNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLE 244 (252)
T ss_dssp HCSCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHH
T ss_pred cCccc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHH
Confidence 99999 59999999999999999999999999999999 89999999999999999999999999999999876544
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=4.8e-24 Score=227.28 Aligned_cols=176 Identities=13% Similarity=0.034 Sum_probs=104.5
Q ss_pred CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhh
Q 013299 191 IINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQME 270 (446)
Q Consensus 191 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~ 270 (446)
.|+++++|++||.++..+|++++|+..|+++| +++|+++.+++.+|.++..
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl--~l~P~~~~a~~nLg~~l~~--------------------------- 55 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKAL--EVFPEFAAAHSNLASVLQQ--------------------------- 55 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCSCCHHHHHHHHHHHHH---------------------------
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHH---------------------------
Confidence 46666666666666666666666666666666 5666665555444333211
Q ss_pred hHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Q 013299 271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS 350 (446)
Q Consensus 271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~ 350 (446)
.|++++|+..|++|+ +++|+++.+++++|.++..+|++++|+..|++|++++|++
T Consensus 56 ------------------------~g~~~eA~~~~~~Al-~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~ 110 (723)
T 4gyw_A 56 ------------------------QGKLQEALMHYKEAI-RISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF 110 (723)
T ss_dssp ------------------------TTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred ------------------------cCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 123455555566666 5666666666666666666666666666666666666665
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhh
Q 013299 351 NLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTK 423 (446)
Q Consensus 351 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~ 423 (446)
..+|.++|.++..+|++++|+..|++|++++| ++..++.++|.++..+|++++|.+.|++++++.|++.+
T Consensus 111 -~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P--~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~~~ 180 (723)
T 4gyw_A 111 -ADAHSNLASIHKDSGNIPEAIASYRTALKLKP--DFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLE 180 (723)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS--CCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhHHh
Confidence 36666666666666666666666666666666 56666666666666666666666666666666655433
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.5e-24 Score=206.04 Aligned_cols=286 Identities=12% Similarity=0.011 Sum_probs=225.3
Q ss_pred HHHHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHH
Q 013299 10 LEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRA 89 (446)
Q Consensus 10 ~~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~a 89 (446)
...++.+|.++...|++++|+..|+++++. .|.+. .....++..+|.++...|++++|+..|+++
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~--------~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 69 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQV--------GTEDL-------KTLSAIYSQLGNAYFYLHDYAKALEYHHHD 69 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCSCH-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhh--------CcccH-------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 567889999999999999999999999987 23321 123467888999999999999999999999
Q ss_pred hCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHH
Q 013299 90 LLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSF 169 (446)
Q Consensus 90 l~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~ 169 (446)
+.. .... ...|..+.++..+|.
T Consensus 70 l~~----~~~~------------------------------------------------------~~~~~~~~~~~~l~~ 91 (338)
T 3ro2_A 70 LTL----ARTI------------------------------------------------------GDQLGEAKASGNLGN 91 (338)
T ss_dssp HHH----HHHH------------------------------------------------------TCHHHHHHHHHHHHH
T ss_pred HHH----hhcc------------------------------------------------------cccHHHHHHHHHHHH
Confidence 886 1100 001223456778888
Q ss_pred HHHhcCCHHHHHHHHHhhCCCCCCc------HHHHHHHHHHHHHCCC--------------------hHHHHHHHHHHhc
Q 013299 170 AFSIAGDLSSLATQIEELLPGIINR------KERYHILALCYYGAGE--------------------DLVALNLLRTLLS 223 (446)
Q Consensus 170 ~l~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~--------------------~~eA~~~~~~al~ 223 (446)
++...|++++|+..|++++++.|.. ..++..+|.++...|+ +++|+..+++++
T Consensus 92 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~- 170 (338)
T 3ro2_A 92 TLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENL- 170 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHH-
Confidence 9999999999999999988775544 3388899999999999 899999998887
Q ss_pred CCC------CCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC-cchhhhHHHHHhhchhHhhhhhhhchHHHHH
Q 013299 224 GSE------DPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDG-CDQMESTANCLLGISLSAQSKVAITDFDRAT 296 (446)
Q Consensus 224 ~~~------~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~-~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~ 296 (446)
.+ .|....++..++.++. ..|++++|+.+++++++..+.. .......++..+|.++... |
T Consensus 171 -~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g 237 (338)
T 3ro2_A 171 -SLVTALGDRAAQGRAFGNLGNTHY-LLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFL-----------G 237 (338)
T ss_dssp -HHHHHHTCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH-----------T
T ss_pred -HHHHhcCCHHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc-----------C
Confidence 44 2333445666666554 4688999999999998864321 1223456888889888654 5
Q ss_pred HHHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC-----HHHHHHHHHHHHHc
Q 013299 297 RQAKALQALVSAARSTNMRD------LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN-----LKGWLLMARILSAQ 365 (446)
Q Consensus 297 ~~~eAl~~~~~al~~~~P~~------~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~-----~~~~~~la~~~~~~ 365 (446)
++++|+..+++++ .+.|+. +.+++.+|.++..+|++++|+.++++++.+.|... ..++..+|.++..+
T Consensus 238 ~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~ 316 (338)
T 3ro2_A 238 EFETASEYYKKTL-LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTAL 316 (338)
T ss_dssp CHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH-HHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHc
Confidence 7899999999999 888776 78999999999999999999999999999876531 24888999999999
Q ss_pred cCHHHHHHHHHHHHhhcC
Q 013299 366 KRYEDAETILNAALDQTG 383 (446)
Q Consensus 366 g~~~eA~~~~~~al~~~p 383 (446)
|++++|+.++++++++.+
T Consensus 317 g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 317 GNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp TCHHHHHHHHHHHHHC--
T ss_pred CChHHHHHHHHHHHHHHH
Confidence 999999999999999877
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.6e-24 Score=228.22 Aligned_cols=173 Identities=14% Similarity=0.039 Sum_probs=154.5
Q ss_pred cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHH
Q 013299 156 RIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALL 235 (446)
Q Consensus 156 ~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~ 235 (446)
..|+++++++++|.++..+|++++|+++|+++++++|+++.+|++||.+|..+|++++|+..|+++| +++|+++.+++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al--~l~P~~~~a~~ 81 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI--RISPTFADAYS 81 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhCCCCHHHHH
Confidence 3599999999999999999999999999999999999999999999999999999999999999999 89999988777
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCC
Q 013299 236 IASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMR 315 (446)
Q Consensus 236 ~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~ 315 (446)
.+|.++.. .|++++|+++|++++ +++|+
T Consensus 82 nLg~~l~~---------------------------------------------------~g~~~~A~~~~~kAl-~l~P~ 109 (723)
T 4gyw_A 82 NMGNTLKE---------------------------------------------------MQDVQGALQCYTRAI-QINPA 109 (723)
T ss_dssp HHHHHHHH---------------------------------------------------TTCHHHHHHHHHHHH-HHCTT
T ss_pred HHHHHHHH---------------------------------------------------cCCHHHHHHHHHHHH-HhCCC
Confidence 66544322 235678888888889 89999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013299 316 DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTG 383 (446)
Q Consensus 316 ~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 383 (446)
++.+++++|.++..+|++++|+..|++|++++|++ ..+|.++|.++..+|++++|+..+++++++.|
T Consensus 110 ~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~-~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 110 FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDF-PDAYCNLAHCLQIVCDWTDYDERMKKLVSIVA 176 (723)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC-HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-hHHHhhhhhHHHhcccHHHHHHHHHHHHHhCh
Confidence 99999999999999999999999999999999998 49999999999999999999999999988776
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.4e-23 Score=189.53 Aligned_cols=216 Identities=12% Similarity=0.082 Sum_probs=177.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCC-CcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHH
Q 013299 158 EWDPSILDHLSFAFSIAGDLSSLATQIEELLPGII-NRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLI 236 (446)
Q Consensus 158 p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~ 236 (446)
|.++++++.+|.++...|++++|+..|+++++++| .++.+++++|.++...|++++|+..|++++ ..+|+++.++..
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al--~~~p~~~~~~~~ 81 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAI--KKNYNLANAYIG 81 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HTTCSHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHH--HhCcchHHHHHH
Confidence 66889999999999999999999999999999999 999999999999999999999999999999 899999999988
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHcCCCcch--hhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCC
Q 013299 237 ASKICGEYPDLAEEGATFASRALECLGDGCDQ--MESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNM 314 (446)
Q Consensus 237 ~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~--~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P 314 (446)
+|.++.. .|++++|+..++++++..|.+... ....++..+|.++ ...|++++|+..|++++ +++|
T Consensus 82 l~~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~-----------~~~~~~~~A~~~~~~al-~~~p 148 (228)
T 4i17_A 82 KSAAYRD-MKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKF-----------QQAGNIEKAEENYKHAT-DVTS 148 (228)
T ss_dssp HHHHHHH-TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH-----------HHTTCHHHHHHHHHHHT-TSSC
T ss_pred HHHHHHH-cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHH-----------HHhccHHHHHHHHHHHH-hcCC
Confidence 8877554 689999999999999965544211 1124566666666 35788999999999999 9999
Q ss_pred C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHH
Q 013299 315 R--DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLR 392 (446)
Q Consensus 315 ~--~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~ 392 (446)
+ ++.+++++|.++..+| ...++++..+.+.++ ..+ .+......+.|++|+.+++++++++| ++..+..
T Consensus 149 ~~~~~~~~~~l~~~~~~~~-----~~~~~~a~~~~~~~~-~~~--~~~~~~~~~~~~~A~~~~~~a~~l~p--~~~~~~~ 218 (228)
T 4i17_A 149 KKWKTDALYSLGVLFYNNG-----ADVLRKATPLASSNK-EKY--ASEKAKADAAFKKAVDYLGEAVTLSP--NRTEIKQ 218 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----HHHHHHHGGGTTTCH-HHH--HHHHHHHHHHHHHHHHHHHHHHHHCT--TCHHHHH
T ss_pred CcccHHHHHHHHHHHHHHH-----HHHHHHHHhcccCCH-HHH--HHHHHHHHHHHHHHHHHHHHHhhcCC--CCHHHHH
Confidence 9 8899999999987554 455677778877762 443 34556677889999999999999999 8888877
Q ss_pred HHHHHH
Q 013299 393 TKAKVQ 398 (446)
Q Consensus 393 ~~a~~~ 398 (446)
.++.+.
T Consensus 219 ~l~~i~ 224 (228)
T 4i17_A 219 MQDQVK 224 (228)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776654
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.4e-22 Score=181.74 Aligned_cols=213 Identities=18% Similarity=0.106 Sum_probs=191.1
Q ss_pred CCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh
Q 013299 190 GIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQM 269 (446)
Q Consensus 190 ~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~ 269 (446)
.+|+++.+|+.+|.++...|++++|+..|++++ ..+|+++.++..++.++.. .|++++|+.+++++++..|.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~~~~---- 75 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDAL--KSDPKNELAWLVRAEIYQY-LKVNDKAQESFRQALSIKPDS---- 75 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTC----
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH--HhCccchHHHHHHHHHHHH-cCChHHHHHHHHHHHHhCCCC----
Confidence 468899999999999999999999999999999 8999999999888877654 789999999999999965543
Q ss_pred hhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 013299 270 ESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARS--TNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLE 347 (446)
Q Consensus 270 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~--~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~ 347 (446)
..++..+|.++...+ |++++|+..|++++ + .+|+++.+++.+|.++...|++++|+..+++++..+
T Consensus 76 -~~~~~~l~~~~~~~~----------~~~~~A~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 143 (225)
T 2vq2_A 76 -AEINNNYGWFLCGRL----------NRPAESMAYFDKAL-ADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ 143 (225)
T ss_dssp -HHHHHHHHHHHHTTT----------CCHHHHHHHHHHHH-TSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred -hHHHHHHHHHHHHhc----------CcHHHHHHHHHHHH-cCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 568889999886640 46899999999999 9 778889999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhh
Q 013299 348 GGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTK 423 (446)
Q Consensus 348 P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~ 423 (446)
|++ ..++..+|.++..+|++++|+.+++++++..|. ++...+..++.++...|+.++|...++.++++.|++..
T Consensus 144 ~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 217 (225)
T 2vq2_A 144 PQF-PPAFKELARTKMLAGQLGDADYYFKKYQSRVEV-LQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEE 217 (225)
T ss_dssp TTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred CCC-chHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHH
Confidence 999 599999999999999999999999999999882 36778888999999999999999999999999876544
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-23 Score=209.37 Aligned_cols=275 Identities=13% Similarity=-0.018 Sum_probs=220.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcH----HHHHHHHHHHHHCCChHHHHHHHHHHhcCCC------CC
Q 013299 159 WDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRK----ERYHILALCYYGAGEDLVALNLLRTLLSGSE------DP 228 (446)
Q Consensus 159 ~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~------~P 228 (446)
.....+..+|..+...|++++|+..|+++++.+|+++ .+|+.+|.++...|++++|+..|++++ .+ +|
T Consensus 46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al--~~~~~~~~~~ 123 (411)
T 4a1s_A 46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDL--TLAKSMNDRL 123 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH--HHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH--HHHHHccCch
Confidence 3445677899999999999999999999999999987 589999999999999999999999999 65 56
Q ss_pred CChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC-CcchhhhHHHHHhhchhHhhhhh------hhchHHHHHHHHHH
Q 013299 229 KCLPALLIASKICGEYPDLAEEGATFASRALECLGD-GCDQMESTANCLLGISLSAQSKV------AITDFDRATRQAKA 301 (446)
Q Consensus 229 ~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~-~~~~~~~~a~~~lg~~~~~~~~~------~~~~~~~~~~~~eA 301 (446)
....++..+|.++. ..|++++|+.+++++++..+. .+......++..+|.++...++. ..........+++|
T Consensus 124 ~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A 202 (411)
T 4a1s_A 124 GEAKSSGNLGNTLK-VMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRA 202 (411)
T ss_dssp HHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHH
Confidence 67777887777655 478999999999999986432 11234467889999999776430 00000112238999
Q ss_pred HHHHHHHHHhhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHH------HHHHHHHHHHHccCHH
Q 013299 302 LQALVSAARSTN------MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLK------GWLLMARILSAQKRYE 369 (446)
Q Consensus 302 l~~~~~al~~~~------P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~------~~~~la~~~~~~g~~~ 369 (446)
+..|++++ ++. |....+++++|.++..+|++++|+.++++++.+.|+.. . ++..+|.++..+|+++
T Consensus 203 ~~~~~~al-~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~ 280 (411)
T 4a1s_A 203 VEFYQENL-KLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG-DRAAERRANSNLGNSHIFLGQFE 280 (411)
T ss_dssp HHHHHHHH-HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHCcCHH
Confidence 99999998 764 44556899999999999999999999999999988652 3 8999999999999999
Q ss_pred HHHHHHHHHHhhcCCCC----cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhccCCcchhhHHhhhhccc
Q 013299 370 DAETILNAALDQTGKWE----QGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKVYFMRKRVS 442 (446)
Q Consensus 370 eA~~~~~~al~~~p~~~----~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (446)
+|+.++++++...|+.. ...++..+|.++..+|++++|+..|++++++.+...+ .+....+|+..++++
T Consensus 281 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~la~~~ 353 (411)
T 4a1s_A 281 DAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD----RIGEARACWSLGNAH 353 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC----hHHHHHHHHHHHHHH
Confidence 99999999998876211 2678899999999999999999999999999876532 233444555555443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=2.9e-23 Score=194.22 Aligned_cols=231 Identities=15% Similarity=0.046 Sum_probs=200.7
Q ss_pred HHHhcCCHHHHHHHHHhhCCC----CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCC
Q 013299 170 AFSIAGDLSSLATQIEELLPG----IINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYP 245 (446)
Q Consensus 170 ~l~~~~~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~ 245 (446)
.+...|++++|+..|+++++. +|+++.+|+.+|.++...|++++|+..|++++ ..+|+++.++..+|.++.. .
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al--~~~~~~~~~~~~la~~~~~-~ 90 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQAL--AIRPDMPEVFNYLGIYLTQ-A 90 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCCCCHHHHHHHHHHHHH-T
T ss_pred ccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHH--HcCCCcHHHHHHHHHHHHH-c
Confidence 344568899999999999998 46778999999999999999999999999999 8999999999988877654 7
Q ss_pred CCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 013299 246 DLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSL 325 (446)
Q Consensus 246 ~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~ 325 (446)
|++++|+.+++++++..|.+ ..++..+|.++... |++++|+..|++++ +++|+++.....++.
T Consensus 91 ~~~~~A~~~~~~al~~~~~~-----~~~~~~la~~~~~~-----------g~~~~A~~~~~~a~-~~~~~~~~~~~~~~~ 153 (275)
T 1xnf_A 91 GNFDAAYEAFDSVLELDPTY-----NYAHLNRGIALYYG-----------GRDKLAQDDLLAFY-QDDPNDPFRSLWLYL 153 (275)
T ss_dssp TCHHHHHHHHHHHHHHCTTC-----THHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCccc-----cHHHHHHHHHHHHh-----------ccHHHHHHHHHHHH-HhCCCChHHHHHHHH
Confidence 89999999999999965544 57899999999765 57899999999999 999999988777775
Q ss_pred HHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCC--CcHHHHHHHHHHHHHhCC
Q 013299 326 EYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKW--EQGELLRTKAKVQLVQGQ 403 (446)
Q Consensus 326 ~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~--~~~~~~~~~a~~~~~~g~ 403 (446)
. ...|++++|+..+++++...|++. ..|. ++.++...+++++|+..+++++...|+. ++..+++.+|.++...|+
T Consensus 154 ~-~~~~~~~~A~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 230 (275)
T 1xnf_A 154 A-EQKLDEKQAKEVLKQHFEKSDKEQ-WGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGD 230 (275)
T ss_dssp H-HHHHCHHHHHHHHHHHHHHSCCCS-THHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred H-HHhcCHHHHHHHHHHHHhcCCcch-HHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCC
Confidence 5 567999999999999999999984 5554 7888888999999999999999877610 236889999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhh
Q 013299 404 LKGAVETYTHLLAALQVQTK 423 (446)
Q Consensus 404 ~~eA~~~~~~~l~l~~~~~~ 423 (446)
+++|+..|++++++.|++..
T Consensus 231 ~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 231 LDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp HHHHHHHHHHHHTTCCTTCH
T ss_pred HHHHHHHHHHHHhCCchhHH
Confidence 99999999999999875533
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.90 E-value=2.5e-22 Score=193.14 Aligned_cols=224 Identities=9% Similarity=-0.016 Sum_probs=190.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHh-------cCCH-------HHHHHHHHhhCC-CCCCcHHHHHHHHH
Q 013299 139 EEAILLLMILLRKVALKRIEWDPSILDHLSFAFSI-------AGDL-------SSLATQIEELLP-GIINRKERYHILAL 203 (446)
Q Consensus 139 ~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~-------~~~~-------~~A~~~~~~al~-~~p~~~~~~~~lg~ 203 (446)
++|+..+ +.++..+|.++++|..+|..+.. .|++ ++|+..|++|+. ++|+++.+|+.+|.
T Consensus 33 ~~a~~~~-----~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~ 107 (308)
T 2ond_A 33 KRVMFAY-----EQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYAD 107 (308)
T ss_dssp HHHHHHH-----HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 5666654 56677889999999999999874 5886 999999999999 79999999999999
Q ss_pred HHHHCCChHHHHHHHHHHhcCCCCCCChH-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhH
Q 013299 204 CYYGAGEDLVALNLLRTLLSGSEDPKCLP-ALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLS 282 (446)
Q Consensus 204 ~~~~~g~~~eA~~~~~~al~~~~~P~~~~-a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~ 282 (446)
++...|++++|+..|++++ +++|+++. ++...+.++. ..|++++|+..|+++++..|+. ..++...+....
T Consensus 108 ~~~~~~~~~~A~~~~~~al--~~~p~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~-----~~~~~~~a~~~~ 179 (308)
T 2ond_A 108 YEESRMKYEKVHSIYNRLL--AIEDIDPTLVYIQYMKFAR-RAEGIKSGRMIFKKAREDARTR-----HHVYVTAALMEY 179 (308)
T ss_dssp HHHHTTCHHHHHHHHHHHH--TSSSSCTHHHHHHHHHHHH-HHHCHHHHHHHHHHHHTSTTCC-----THHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHH--hccccCccHHHHHHHHHHH-HhcCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHH
Confidence 9999999999999999999 89999987 8887776654 4689999999999999954432 334443332211
Q ss_pred hhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---cCCCCHHHHHHHH
Q 013299 283 AQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKL---EGGSNLKGWLLMA 359 (446)
Q Consensus 283 ~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l---~P~~~~~~~~~la 359 (446)
. ..|++++|+..|++++ +.+|+++.+|..+|.++...|++++|+..|++++.. +|+.....|..++
T Consensus 180 ~----------~~~~~~~A~~~~~~al-~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~ 248 (308)
T 2ond_A 180 Y----------CSKDKSVAFKIFELGL-KKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFL 248 (308)
T ss_dssp H----------TSCCHHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHH
T ss_pred H----------HcCCHHHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 1 1367899999999999 999999999999999999999999999999999995 6642258999999
Q ss_pred HHHHHccCHHHHHHHHHHHHhhcCCCCcH
Q 013299 360 RILSAQKRYEDAETILNAALDQTGKWEQG 388 (446)
Q Consensus 360 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 388 (446)
.++...|++++|..+++++++..| ++.
T Consensus 249 ~~~~~~g~~~~a~~~~~~a~~~~p--~~~ 275 (308)
T 2ond_A 249 AFESNIGDLASILKVEKRRFTAFR--EEY 275 (308)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHTT--TTT
T ss_pred HHHHHcCCHHHHHHHHHHHHHHcc--ccc
Confidence 999999999999999999999999 543
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-21 Score=184.32 Aligned_cols=206 Identities=14% Similarity=0.077 Sum_probs=160.7
Q ss_pred CCCHHHHHHHHHHHHh----cCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH----CCChHHHHHHHHHHhcCCCCCC
Q 013299 158 EWDPSILDHLSFAFSI----AGDLSSLATQIEELLPGIINRKERYHILALCYYG----AGEDLVALNLLRTLLSGSEDPK 229 (446)
Q Consensus 158 p~~~~~~~~lg~~l~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~eA~~~~~~al~~~~~P~ 229 (446)
|.++.+++.+|.++.. .+++++|+..|+++++.+ ++.+++++|.++.. .|++++|+..|++++ .. +
T Consensus 35 ~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~--~~--~ 108 (273)
T 1ouv_A 35 LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKAC--DL--K 108 (273)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH--HT--T
T ss_pred CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHH--Hc--C
Confidence 4445566777777777 888888888888888764 78888888888888 888888888888888 44 4
Q ss_pred ChHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHH
Q 013299 230 CLPALLIASKICGEY---PDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALV 306 (446)
Q Consensus 230 ~~~a~~~~~~~~~~~---~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~ 306 (446)
++.+++.+|.++... .+++++|+.+|+++++. .+ ..+++.+|.+|.... ...+++++|+.+|+
T Consensus 109 ~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~~------~~a~~~lg~~~~~~~-------~~~~~~~~A~~~~~ 174 (273)
T 1ouv_A 109 YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-ND------GDGCTILGSLYDAGR-------GTPKDLKKALASYD 174 (273)
T ss_dssp CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-TC------HHHHHHHHHHHHHTS-------SSCCCHHHHHHHHH
T ss_pred CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-Cc------HHHHHHHHHHHHcCC-------CCCCCHHHHHHHHH
Confidence 777777777665441 57788888888888873 21 457778888775410 00246899999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHH
Q 013299 307 SAARSTNMRDLSILYRLSLEYAE----QRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSA----QKRYEDAETILNAA 378 (446)
Q Consensus 307 ~al~~~~P~~~~a~~~lg~~~~~----~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~----~g~~~eA~~~~~~a 378 (446)
+++ +. +++.+++++|.++.. .+++++|+.+|+++++.+| + .++..+|.++.. .+++++|+.+|+++
T Consensus 175 ~a~-~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~-~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a 248 (273)
T 1ouv_A 175 KAC-DL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--G-GGCFNLGAMQYNGEGVTRNEKQAIENFKKG 248 (273)
T ss_dssp HHH-HT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--H-HHHHHHHHHHHTTSSSSCCSTTHHHHHHHH
T ss_pred HHH-HC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--H-HHHHHHHHHHHcCCCcccCHHHHHHHHHHH
Confidence 999 76 568999999999999 9999999999999998865 3 889999999999 99999999999999
Q ss_pred HhhcCCCCcHHHH
Q 013299 379 LDQTGKWEQGELL 391 (446)
Q Consensus 379 l~~~p~~~~~~~~ 391 (446)
++..| ++...+
T Consensus 249 ~~~~~--~~a~~~ 259 (273)
T 1ouv_A 249 CKLGA--KGACDI 259 (273)
T ss_dssp HHHTC--HHHHHH
T ss_pred HHcCC--HHHHHH
Confidence 99988 554433
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.3e-22 Score=203.38 Aligned_cols=226 Identities=12% Similarity=-0.013 Sum_probs=190.2
Q ss_pred HhCChHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcH-HHHHHHHHHHHHHHH
Q 013299 75 LADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNI-EEAILLLMILLRKVA 153 (446)
Q Consensus 75 ~~g~~~eA~~~y~~al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~-~eA~~~l~~~~~~~~ 153 (446)
..+++++|+..+.+++.. +|.+.. ....+|.. +...|++ ++|+..+ +.+
T Consensus 80 ~~~~~~~al~~l~~~~~~----~~~~a~-~~~~lg~~--------------------~~~~g~~~~~A~~~~-----~~a 129 (474)
T 4abn_A 80 VQEEMEKTLQQMEEVLGS----AQVEAQ-ALMLKGKA--------------------LNVTPDYSPEAEVLL-----SKA 129 (474)
T ss_dssp HHHHHHHHHHHHHHHHTT----CCCCHH-HHHHHHHH--------------------HTSSSSCCHHHHHHH-----HHH
T ss_pred HHHHHHHHHHHHHHHhcc----CchhHH-HHHHHHHH--------------------HHhccccHHHHHHHH-----HHH
Confidence 355688899999988887 443322 23344433 4456788 9999886 566
Q ss_pred hhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHC---------CChHHHHHHHHHHhcC
Q 013299 154 LKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGA---------GEDLVALNLLRTLLSG 224 (446)
Q Consensus 154 l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~---------g~~~eA~~~~~~al~~ 224 (446)
++.+|+++++|..+|.++...|++++|+++|+++++++|+ +.+|+++|.++... |++++|+..|++++
T Consensus 130 l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al-- 206 (474)
T 4abn_A 130 VKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAV-- 206 (474)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHH--
T ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHH--
Confidence 7889999999999999999999999999999999999999 79999999999999 99999999999999
Q ss_pred CCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHH
Q 013299 225 SEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQA 304 (446)
Q Consensus 225 ~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~ 304 (446)
.++|+++.+++.+|.++... ++..|. ..+++++|+..
T Consensus 207 ~~~p~~~~~~~~lg~~~~~~-----------------------------~~~~~~--------------~~g~~~~A~~~ 243 (474)
T 4abn_A 207 QMDVLDGRSWYILGNAYLSL-----------------------------YFNTGQ--------------NPKISQQALSA 243 (474)
T ss_dssp HHCTTCHHHHHHHHHHHHHH-----------------------------HHHTTC--------------CHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHH-----------------------------HHhhcc--------------ccchHHHHHHH
Confidence 89999998888776554321 111111 02678999999
Q ss_pred HHHHHHhhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 013299 305 LVSAARSTNM---RDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAA 378 (446)
Q Consensus 305 ~~~al~~~~P---~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~a 378 (446)
|++++ +++| +++.+++++|.++..+|++++|+..|+++++++|++ ..+|..++.++..+|++++|+..+.+.
T Consensus 244 ~~~al-~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~-~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 244 YAQAE-KVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAW-PEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHH-HHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHH-HhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999 9999 999999999999999999999999999999999999 599999999999999999999876543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.5e-20 Score=194.21 Aligned_cols=314 Identities=12% Similarity=0.022 Sum_probs=206.5
Q ss_pred HHHHhHHHHHHhCChHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHH
Q 013299 65 AVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILL 144 (446)
Q Consensus 65 a~~~l~~~~~~~g~~~eA~~~y~~al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~ 144 (446)
++..++. +.+.|++++|...|+++++. .|.+.. +...++.++.. .|++++|..+
T Consensus 15 ~w~~l~~-~~~~~~~~~a~~~~e~al~~----~P~~~~-~w~~~~~~~~~--------------------~~~~~~a~~~ 68 (530)
T 2ooe_A 15 AWSILIR-EAQNQPIDKARKTYERLVAQ----FPSSGR-FWKLYIEAEIK--------------------AKNYDKVEKL 68 (530)
T ss_dssp HHHHHHH-HHHSSCHHHHHHHHHHHHTT----CTTCHH-HHHHHHHHHHH--------------------TTCHHHHHHH
T ss_pred HHHHHHH-HHHhCCHHHHHHHHHHHHHH----CCCCHH-HHHHHHHHHHh--------------------cCCHHHHHHH
Confidence 4555555 36799999999999999999 665432 34445544332 4566777666
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHH-HHHhcCCHHHHHH----HHHhhCC---CCCCcHHHHHHHHHHHHH---------
Q 013299 145 LMILLRKVALKRIEWDPSILDHLSF-AFSIAGDLSSLAT----QIEELLP---GIINRKERYHILALCYYG--------- 207 (446)
Q Consensus 145 l~~~~~~~~l~~~p~~~~~~~~lg~-~l~~~~~~~~A~~----~~~~al~---~~p~~~~~~~~lg~~~~~--------- 207 (446)
+ +.++...| +.+.|...+. .....|++++|.+ .|++++. .+|++...|..++.....
T Consensus 69 ~-----~ral~~~p-~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~ 142 (530)
T 2ooe_A 69 F-----QRCLMKVL-HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAE 142 (530)
T ss_dssp H-----HHHTTTCC-CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTH
T ss_pred H-----HHHHhcCC-ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHH
Confidence 4 45566666 5666666653 3344566555543 6666543 456666777766666554
Q ss_pred CCChHHHHHHHHHHhcCCCCCCChHHHHHH--------------------------------------------------
Q 013299 208 AGEDLVALNLLRTLLSGSEDPKCLPALLIA-------------------------------------------------- 237 (446)
Q Consensus 208 ~g~~~eA~~~~~~al~~~~~P~~~~a~~~~-------------------------------------------------- 237 (446)
.|++++|..+|++++ . .|.+....++.
T Consensus 143 ~~~~~~a~~~y~~al--~-~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~ 219 (530)
T 2ooe_A 143 NQRITAVRRVYQRGC--V-NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVP 219 (530)
T ss_dssp HHHHHHHHHHHHHHT--T-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCC
T ss_pred HhHHHHHHHHHHHHH--h-chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCC
Confidence 566777777777777 5 45432111100
Q ss_pred ---------------HHHHhcC-----CCC----HHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHH
Q 013299 238 ---------------SKICGEY-----PDL----AEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFD 293 (446)
Q Consensus 238 ---------------~~~~~~~-----~~~----~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~ 293 (446)
..+.+.. .++ .+.++..|++++...|.+ +.+|+.+|..+....... .
T Consensus 220 p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~-----~~~w~~~~~~~~~~~~~~----~ 290 (530)
T 2ooe_A 220 PQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHH-----PDIWYEAAQYLEQSSKLL----A 290 (530)
T ss_dssp CC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHHHHH----H
T ss_pred CCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhchhh----h
Confidence 0000000 011 135667777887755443 567777777765310000 0
Q ss_pred HHHHHH-------HHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHc
Q 013299 294 RATRQA-------KALQALVSAARS-TNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQ 365 (446)
Q Consensus 294 ~~~~~~-------eAl~~~~~al~~-~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~ 365 (446)
..|+++ +|+..|++|+ + ++|+++.+|+.+|.++...|++++|...|+++++++|+++..+|..+|.++..+
T Consensus 291 ~~g~~~~a~~~~~~A~~~~~~Al-~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 369 (530)
T 2ooe_A 291 EKGDMNNAKLFSDEAANIYERAI-STLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRA 369 (530)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHT-TTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHH
T ss_pred hccchhhhhhhhHHHHHHHHHHH-HHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHh
Confidence 023443 8899999999 8 789999999999999999999999999999999998887325899999888888
Q ss_pred cCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHHhhhhhhc
Q 013299 366 KRYEDAETILNAALDQTGKWEQGELLRTKAKV-QLVQGQLKGAVETYTHLLAALQVQTKTF 425 (446)
Q Consensus 366 g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~-~~~~g~~~eA~~~~~~~l~l~~~~~~~~ 425 (446)
|++++|..+|++|++..| .....+...+.+ +...|++++|...|+++++..|++...+
T Consensus 370 ~~~~~A~~~~~~Al~~~~--~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~ 428 (530)
T 2ooe_A 370 EGIKSGRMIFKKAREDAR--TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYV 428 (530)
T ss_dssp HHHHHHHHHHHHHHTCTT--CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cCHHHHHHHHHHHHhccC--CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHH
Confidence 888888888888888877 566666655554 3358888888888888888887665544
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.3e-22 Score=204.09 Aligned_cols=227 Identities=11% Similarity=-0.023 Sum_probs=183.5
Q ss_pred CCCHHHHHHHHHHHHhcCC----HHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCC---ChHHHHHHHHHHhcCCCCCCC
Q 013299 158 EWDPSILDHLSFAFSIAGD----LSSLATQIEELLPGIINRKERYHILALCYYGAG---EDLVALNLLRTLLSGSEDPKC 230 (446)
Q Consensus 158 p~~~~~~~~lg~~l~~~~~----~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g---~~~eA~~~~~~al~~~~~P~~ 230 (446)
+.++.+++.+|.++...+. .+++...++.+...+|. ++++||.+|...| ++++|+..|++++ ...|..
T Consensus 138 ~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa--~~g~~~ 212 (452)
T 3e4b_A 138 AGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDI---CYVELATVYQKKQQPEQQAELLKQMEAGV--SRGTVT 212 (452)
T ss_dssp HTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HTTCSC
T ss_pred CCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHH--HCCCHH
Confidence 4567888888988888884 45555667777777665 9999999999999 9999999999999 788888
Q ss_pred hHHHHHHHHHHhcCC----CCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHH
Q 013299 231 LPALLIASKICGEYP----DLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALV 306 (446)
Q Consensus 231 ~~a~~~~~~~~~~~~----~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~ 306 (446)
...++.+|.++ ... +++++|+.+|+++. +.+ +.+++.+|.+|.... ..+++++|+.+|+
T Consensus 213 a~~~~~Lg~~y-~~g~~~~~d~~~A~~~~~~aa---~g~-----~~a~~~Lg~~~~~~~--------~~~d~~~A~~~~~ 275 (452)
T 3e4b_A 213 AQRVDSVARVL-GDATLGTPDEKTAQALLEKIA---PGY-----PASWVSLAQLLYDFP--------ELGDVEQMMKYLD 275 (452)
T ss_dssp HHHHHHHHHHH-TCGGGSSCCHHHHHHHHHHHG---GGS-----THHHHHHHHHHHHSG--------GGCCHHHHHHHHH
T ss_pred HHHHHHHHHHH-hCCCCCCCCHHHHHHHHHHHc---CCC-----HHHHHHHHHHHHhCC--------CCCCHHHHHHHHH
Confidence 88767777665 333 68899999999987 333 568899998843211 1357899999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHH
Q 013299 307 SAARSTNMRDLSILYRLSLEYAEQR-----KLNAAHYYAKMLLKLEGGSNLKGWLLMARILSA----QKRYEDAETILNA 377 (446)
Q Consensus 307 ~al~~~~P~~~~a~~~lg~~~~~~~-----~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~----~g~~~eA~~~~~~ 377 (446)
+++ +. +++.++++||.+|. .| ++++|+.+|++|. |++ ..+++++|.++.. ..++++|+.+|++
T Consensus 276 ~Aa-~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~-~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 347 (452)
T 3e4b_A 276 NGR-AA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GRE-VAADYYLGQIYRRGYLGKVYPQKALDHLLT 347 (452)
T ss_dssp HHH-HT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTC-HHHHHHHHHHHHTTTTSSCCHHHHHHHHHH
T ss_pred HHH-HC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCC-HHHHHHHHHHHHCCCCCCcCHHHHHHHHHH
Confidence 998 54 58999999999988 55 9999999999998 888 4999999998877 4499999999999
Q ss_pred HHhhcCCCCcHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHH
Q 013299 378 ALDQTGKWEQGELLRTKAKVQLV----QGQLKGAVETYTHLLAAL 418 (446)
Q Consensus 378 al~~~p~~~~~~~~~~~a~~~~~----~g~~~eA~~~~~~~l~l~ 418 (446)
+.+ + +++.+++++|.++.. ..++++|+.+|+++.+.-
T Consensus 348 Aa~--~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 348 AAR--N--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp HHT--T--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HHh--h--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 986 3 466788999998874 458999999999987653
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.4e-23 Score=196.91 Aligned_cols=247 Identities=15% Similarity=0.063 Sum_probs=194.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCC--------CCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCC--
Q 013299 157 IEWDPSILDHLSFAFSIAGDLSSLATQIEELLP--------GIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSE-- 226 (446)
Q Consensus 157 ~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~--------~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~-- 226 (446)
.|..+.++..+|.++...|++++|+..|+++++ .+|....+++.+|.++...|++++|+..|++++ ..
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al--~~~~ 100 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDAL--AIRE 100 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH--HHHH
Confidence 467788999999999999999999999999999 478889999999999999999999999999999 55
Q ss_pred ------CCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC---CcchhhhHHHHHhhchhHhhhhhhhchHHHHHH
Q 013299 227 ------DPKCLPALLIASKICGEYPDLAEEGATFASRALECLGD---GCDQMESTANCLLGISLSAQSKVAITDFDRATR 297 (446)
Q Consensus 227 ------~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~---~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~ 297 (446)
+|....++..++.++ ...|++++|+.+++++++.... ........++..+|.++... |+
T Consensus 101 ~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~-----------~~ 168 (311)
T 3nf1_A 101 KTLGKDHPAVAATLNNLAVLY-GKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQ-----------GK 168 (311)
T ss_dssp HHHCTTCHHHHHHHHHHHHHH-HTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTT-----------TC
T ss_pred HHhCCCChHHHHHHHHHHHHH-HHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc-----------CC
Confidence 355566777777664 5579999999999999986410 11123467888999998765 56
Q ss_pred HHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC---------CC-----HHHH
Q 013299 298 QAKALQALVSAARST--------NMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG---------SN-----LKGW 355 (446)
Q Consensus 298 ~~eAl~~~~~al~~~--------~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~---------~~-----~~~~ 355 (446)
+++|+..|++++ ++ +|..+.+++.+|.++..+|++++|+..+++++.+.|+ .. ...+
T Consensus 169 ~~~A~~~~~~a~-~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (311)
T 3nf1_A 169 YEEVEYYYQRAL-EIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEER 247 (311)
T ss_dssp HHHHHHHHHHHH-HHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHH
Confidence 899999999999 88 7888889999999999999999999999999986443 21 1233
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Q 013299 356 LLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQV 420 (446)
Q Consensus 356 ~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~ 420 (446)
..++..+...+++.+|+.++++++...| +...+++.+|.++..+|++++|++.|++++++.|+
T Consensus 248 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 248 EECKGKQKDGTSFGEYGGWYKACKVDSP--TVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHC-------CCSCCCC---------CH--HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHhcCchhhHHHHHHHHHHHhhcCCCCc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 3444555566777788889999998888 88999999999999999999999999999999864
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.89 E-value=7.7e-23 Score=217.98 Aligned_cols=191 Identities=9% Similarity=-0.077 Sum_probs=129.9
Q ss_pred hcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhC--------CCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCC
Q 013299 155 KRIEWDPSILDHLSFAFSIAGDLSSLATQIEELL--------PGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSE 226 (446)
Q Consensus 155 ~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al--------~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~ 226 (446)
..+|+++.++...| ...|++++|++.|++++ +.+|+++++|+.+|.++...|++++|+..|++++ +.
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al--~~ 462 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLA--ER 462 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHH--HH
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHh--cc
Confidence 45688888888777 77899999999999999 8899999999999999999999999999999999 88
Q ss_pred CCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHH
Q 013299 227 DPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALV 306 (446)
Q Consensus 227 ~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~ 306 (446)
+|++..+++.+|.+++. .|++++|+..|+++++..|.+ ..+++++|.++... |++++ +..|+
T Consensus 463 ~p~~~~a~~~lg~~~~~-~g~~~~A~~~~~~al~l~P~~-----~~~~~~lg~~~~~~-----------g~~~~-~~~~~ 524 (681)
T 2pzi_A 463 VGWRWRLVWYRAVAELL-TGDYDSATKHFTEVLDTFPGE-----LAPKLALAATAELA-----------GNTDE-HKFYQ 524 (681)
T ss_dssp HCCCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHSTTC-----SHHHHHHHHHHHHH-----------TCCCT-TCHHH
T ss_pred CcchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCC-----hHHHHHHHHHHHHc-----------CChHH-HHHHH
Confidence 99998888777665443 466666666666666643332 34555666655443 34555 66666
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHH
Q 013299 307 SAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYED 370 (446)
Q Consensus 307 ~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~e 370 (446)
+++ +++|+++.+++++|.++..+|++++|+..|+++++++|++ ..+|.++|.++...++.++
T Consensus 525 ~al-~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~-~~a~~~~~~~~~~~~~~~~ 586 (681)
T 2pzi_A 525 TVW-STNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHF-TTARLTSAVTLLSGRSTSE 586 (681)
T ss_dssp HHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTH-HHHHHHHHHHTC-------
T ss_pred HHH-HhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCccc-HHHHHHHHHHHHccCCCCC
Confidence 666 6666666666666666666666666666666666666665 3666666666555555333
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.4e-22 Score=198.81 Aligned_cols=240 Identities=10% Similarity=0.021 Sum_probs=201.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhCCC------CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCC------
Q 013299 163 ILDHLSFAFSIAGDLSSLATQIEELLPG------IINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKC------ 230 (446)
Q Consensus 163 ~~~~lg~~l~~~~~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~------ 230 (446)
.++.+|..+...|++++|+..|++++++ .+..+.+++.+|.++...|++++|+..+++++ .+.++.
T Consensus 105 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al--~~~~~~~~~~~~ 182 (383)
T 3ulq_A 105 FNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAY--EIYKEHEAYNIR 182 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHTCSTTHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHhCccchHH
Confidence 4456999999999999999999999987 33356899999999999999999999999999 664433
Q ss_pred -hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC-cchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHH
Q 013299 231 -LPALLIASKICGEYPDLAEEGATFASRALECLGDG-CDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSA 308 (446)
Q Consensus 231 -~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~-~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~a 308 (446)
..++..+|.++ ...|++++|+.+++++++..+.. +......++.++|.+|..+ |++++|+.+|+++
T Consensus 183 ~~~~~~~lg~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~-----------g~~~~A~~~~~~a 250 (383)
T 3ulq_A 183 LLQCHSLFATNF-LDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQ-----------SQYEDAIPYFKRA 250 (383)
T ss_dssp HHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-----------TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHC-----------CCHHHHHHHHHHH
Confidence 34566666654 45799999999999999865432 2344567899999999765 5789999999999
Q ss_pred HHh-----hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc-----CCCCHHHHHHHHHHHHHccC---HHHHHHH
Q 013299 309 ARS-----TN-MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLE-----GGSNLKGWLLMARILSAQKR---YEDAETI 374 (446)
Q Consensus 309 l~~-----~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~-----P~~~~~~~~~la~~~~~~g~---~~eA~~~ 374 (446)
+ + .+ |..+.+++++|.++..+|++++|+.++++++.+. |.. ...+..+|.++...|+ +++|+..
T Consensus 251 l-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~al~~ 328 (383)
T 3ulq_A 251 I-AVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIY-LSEFEFLKSLYLSGPDEEAIQGFFDF 328 (383)
T ss_dssp H-HHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH-HHHHHHHHHHHTSSCCHHHHHHHHHH
T ss_pred H-HHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 9 8 57 8889999999999999999999999999999985 333 2346789999999999 8888888
Q ss_pred HHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhh
Q 013299 375 LNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQ 421 (446)
Q Consensus 375 ~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~ 421 (446)
+++. ...| +...++..+|.++..+|++++|+..|++++++.++-
T Consensus 329 ~~~~-~~~~--~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~i 372 (383)
T 3ulq_A 329 LESK-MLYA--DLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLI 372 (383)
T ss_dssp HHHT-TCHH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTSC
T ss_pred HHHC-cCHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence 8877 3445 567789999999999999999999999999998653
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.5e-21 Score=182.60 Aligned_cols=208 Identities=13% Similarity=0.043 Sum_probs=153.6
Q ss_pred hcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCc---HHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCCh
Q 013299 155 KRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINR---KERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCL 231 (446)
Q Consensus 155 ~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~ 231 (446)
...|.+++.++.+|..+...|++++|+..|+++++.+|++ +.+++.+|.+++..|++++|+..|++++ ..+|+++
T Consensus 9 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l--~~~p~~~ 86 (261)
T 3qky_A 9 RLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFI--QIYQIDP 86 (261)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCT
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHH--HHCCCCc
Confidence 3456677777777777777777777777777777777777 6777777777777777777777777777 6666543
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHh
Q 013299 232 PALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARS 311 (446)
Q Consensus 232 ~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~ 311 (446)
. ...+++.+|.++...+... ....|++++|+..|++++ +
T Consensus 87 ~-------------------------------------~~~a~~~lg~~~~~~~~~~---~~~~~~~~~A~~~~~~~l-~ 125 (261)
T 3qky_A 87 R-------------------------------------VPQAEYERAMCYYKLSPPY---ELDQTDTRKAIEAFQLFI-D 125 (261)
T ss_dssp T-------------------------------------HHHHHHHHHHHHHHHCCCT---TSCCHHHHHHHHHHHHHH-H
T ss_pred h-------------------------------------hHHHHHHHHHHHHHhcccc---cccchhHHHHHHHHHHHH-H
Confidence 2 1234444555543300000 001367999999999999 9
Q ss_pred hCCCCHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC--HHHHHHHHHHHHHc-------
Q 013299 312 TNMRDLSIL-----------------YRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN--LKGWLLMARILSAQ------- 365 (446)
Q Consensus 312 ~~P~~~~a~-----------------~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~--~~~~~~la~~~~~~------- 365 (446)
.+|+++.+. +.+|.++..+|++++|+..|++++...|+++ ..++..+|.++..+
T Consensus 126 ~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~ 205 (261)
T 3qky_A 126 RYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRA 205 (261)
T ss_dssp HCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGG
T ss_pred HCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhh
Confidence 999997776 8899999999999999999999999999852 36899999999977
Q ss_pred ---cCHHHHHHHHHHHHhhcCCCCc---HHHHHHHHHHHHHhCCHHHH
Q 013299 366 ---KRYEDAETILNAALDQTGKWEQ---GELLRTKAKVQLVQGQLKGA 407 (446)
Q Consensus 366 ---g~~~eA~~~~~~al~~~p~~~~---~~~~~~~a~~~~~~g~~~eA 407 (446)
|++++|+..|+++++.+| ++ ..+...++.++..+|+++++
T Consensus 206 ~~~~~~~~A~~~~~~~~~~~p--~~~~~~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 206 RQPERYRRAVELYERLLQIFP--DSPLLRTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp GHHHHHHHHHHHHHHHHHHCT--TCTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cccchHHHHHHHHHHHHHHCC--CChHHHHHHHHHHHHHHHHHHhhhh
Confidence 999999999999999999 66 34555666676666666544
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.89 E-value=7.8e-22 Score=180.46 Aligned_cols=202 Identities=9% Similarity=-0.003 Sum_probs=171.9
Q ss_pred CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCC-CChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh
Q 013299 191 IINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDP-KCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQM 269 (446)
Q Consensus 191 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P-~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~ 269 (446)
.+.+++.|+.+|.+++..|++++|+..|++++ .++| .+..+++.+|.+ +...|++++|+.+++++++.. |+
T Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al--~~~~~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~al~~~-p~---- 74 (228)
T 4i17_A 3 QTTDPNQLKNEGNDALNAKNYAVAFEKYSEYL--KLTNNQDSVTAYNCGVC-ADNIKKYKEAADYFDIAIKKN-YN---- 74 (228)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHTTTCCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHTT-CS----
T ss_pred cccCHHHHHHHHHHHHHccCHHHHHHHHHHHH--hccCCCCcHHHHHHHHH-HHHhhcHHHHHHHHHHHHHhC-cc----
Confidence 35678999999999999999999999999999 8998 888888876655 455799999999999999954 43
Q ss_pred hhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHH
Q 013299 270 ESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDL-------SILYRLSLEYAEQRKLNAAHYYAKM 342 (446)
Q Consensus 270 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~-------~a~~~lg~~~~~~~~~~~A~~~~~~ 342 (446)
...++..+|.++... |++++|+..|++++ +++|+++ .+++++|.++..+|++++|+..|++
T Consensus 75 ~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~al-~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~ 142 (228)
T 4i17_A 75 LANAYIGKSAAYRDM-----------KNNQEYIATLTEGI-KAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKH 142 (228)
T ss_dssp HHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHc-----------ccHHHHHHHHHHHH-HHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHH
Confidence 267899999999765 57899999999999 9999999 6799999999999999999999999
Q ss_pred HHhhcCC--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Q 013299 343 LLKLEGG--SNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQV 420 (446)
Q Consensus 343 al~l~P~--~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~ 420 (446)
+++++|+ + ..+|.++|.++..+|+ ..++++..+.+ .+... ..+......|.+++|+..|++++++.|+
T Consensus 143 al~~~p~~~~-~~~~~~l~~~~~~~~~-----~~~~~a~~~~~--~~~~~--~~~~~~~~~~~~~~A~~~~~~a~~l~p~ 212 (228)
T 4i17_A 143 ATDVTSKKWK-TDALYSLGVLFYNNGA-----DVLRKATPLAS--SNKEK--YASEKAKADAAFKKAVDYLGEAVTLSPN 212 (228)
T ss_dssp HTTSSCHHHH-HHHHHHHHHHHHHHHH-----HHHHHHGGGTT--TCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHhcCCCccc-HHHHHHHHHHHHHHHH-----HHHHHHHhccc--CCHHH--HHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 9999999 8 5999999999977654 45677777777 44333 3455667788899999999999999865
Q ss_pred hh
Q 013299 421 QT 422 (446)
Q Consensus 421 ~~ 422 (446)
+.
T Consensus 213 ~~ 214 (228)
T 4i17_A 213 RT 214 (228)
T ss_dssp CH
T ss_pred CH
Confidence 54
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.88 E-value=3e-21 Score=184.74 Aligned_cols=230 Identities=10% Similarity=-0.040 Sum_probs=197.2
Q ss_pred hcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCC--ChHHHHHHHHHHhcCCCCCCChHHHHHHHHHH----hcC--
Q 013299 173 IAGDLSSLATQIEELLPGIINRKERYHILALCYYGAG--EDLVALNLLRTLLSGSEDPKCLPALLIASKIC----GEY-- 244 (446)
Q Consensus 173 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~----~~~-- 244 (446)
.....++|+.+++++|.++|++..+|+..|.++...| ++++++..+.++| ..+|++..++...+.+. ...
T Consensus 45 ~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L--~~nPk~y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 45 AEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIA--LDNEKNYQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHH--HHCTTCCHHHHHHHHHHHHHHHHTTT
T ss_pred cCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHH--HHCcccHHHHHHHHHHHHHHHHhccc
Confidence 3344578999999999999999999999999999999 9999999999999 89999999998877665 222
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHH--HHHHHHHHHHHhhCCCCHHHHHH
Q 013299 245 PDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQA--KALQALVSAARSTNMRDLSILYR 322 (446)
Q Consensus 245 ~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~--eAl~~~~~al~~~~P~~~~a~~~ 322 (446)
.+++++++.+++++++..|.+ ..+|.+.|.++...+ .++ ++++.+.+++ +.||.|..+|.+
T Consensus 123 ~~~~~~EL~~~~~~l~~~pkn-----y~aW~~R~~vl~~l~-----------~~~~~~EL~~~~~~i-~~d~~N~sAW~~ 185 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSDPKN-----HHVWSYRKWLVDTFD-----------LHNDAKELSFVDKVI-DTDLKNNSAWSH 185 (306)
T ss_dssp CCCTHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTT-----------CTTCHHHHHHHHHHH-HHCTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhc-----------ccChHHHHHHHHHHH-HhCCCCHHHHHH
Confidence 167899999999999965554 678999998886543 455 8999999999 999999999999
Q ss_pred HHHHHHHcCC------HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHH-HHHHHHHHHhhc---CCCCcHHHHH
Q 013299 323 LSLEYAEQRK------LNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYED-AETILNAALDQT---GKWEQGELLR 392 (446)
Q Consensus 323 lg~~~~~~~~------~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~e-A~~~~~~al~~~---p~~~~~~~~~ 392 (446)
.+.++...++ +++++.++++++.++|++ ..+|+.++.++...|+..+ ....+++++.+. | .++.++.
T Consensus 186 R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n-~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~--~s~~al~ 262 (306)
T 3dra_A 186 RFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQN-PSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQV--TSSFALE 262 (306)
T ss_dssp HHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSC-HHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEE--SCHHHHH
T ss_pred HHHHHHhccccchhhhHHHHHHHHHHHHHhCCCC-ccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCC--CCHHHHH
Confidence 9999998887 999999999999999999 5999999999999999555 556888888776 7 7889999
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHH-HHhhhhhh
Q 013299 393 TKAKVQLVQGQLKGAVETYTHLLA-ALQVQTKT 424 (446)
Q Consensus 393 ~~a~~~~~~g~~~eA~~~~~~~l~-l~~~~~~~ 424 (446)
.++.++.+.|+.++|+++|+.+.+ ++|-..+.
T Consensus 263 ~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~y 295 (306)
T 3dra_A 263 TLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNF 295 (306)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHHHHccCCHHHHHHHHHHHHhccChHHHHH
Confidence 999999999999999999999987 67654443
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-21 Score=199.18 Aligned_cols=366 Identities=15% Similarity=0.054 Sum_probs=247.4
Q ss_pred HHHHhhhhcccChHHHHHHHHHHHHHHHhhh---------cCCCC---CCCCccc-cHHHHHHHHHHHhHHHHHHhC---
Q 013299 14 FLKAKCLQGLGRFKEAAQSCKVILDIVESSF---------AEGFP---ENLGADC-KLQETLNRAVELLPELWKLAD--- 77 (446)
Q Consensus 14 ~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~---------~~~~~---~~~~~~~-~l~~~~~~a~~~l~~~~~~~g--- 77 (446)
...|..+.+.|++++|++.|+++++...... ..+.+ .....++ +..+....+...+|.++...|
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~ 86 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGAT 86 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC----------------------------CHHHHHHHHHTC--CC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCC
Confidence 3467777888888888888888765421000 01111 0000000 000012345566777565555
Q ss_pred --ChHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHhhhcCCCCC---------------CccccccCccccCCCcHHH
Q 013299 78 --APRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCP---------------PNLRSQMGSSFVPRNNIEE 140 (446)
Q Consensus 78 --~~~eA~~~y~~al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~---------------~~~~~~~~~~~~~~~~~~e 140 (446)
++++|+.+|+++++.. +++ ....++.++..+...... +...+.++.+|...+.+++
T Consensus 87 ~~~~~~A~~~~~~Aa~~g-~~~------A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 87 EAEHHEAESLLKKAFANG-EGN------TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp HHHHHHHHHHHHHHHHTT-CSS------CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGG
T ss_pred CcCHHHHHHHHHHHHHCC-CHH------HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCccc
Confidence 7788888888888862 111 134566665544321110 0000122233333333333
Q ss_pred HHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHC----CChHH
Q 013299 141 AILLLMILLRKVALKRIEWDPSILDHLSFAFSIAG---DLSSLATQIEELLPGIINRKERYHILALCYYGA----GEDLV 213 (446)
Q Consensus 141 A~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~---~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~----g~~~e 213 (446)
++..... +.+.+. +.++.+++.+|.++...| ++++|+..|+++.+.+|..+..+++||.+|... +++++
T Consensus 160 ~~~~a~~-~~~~a~---~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~ 235 (452)
T 3e4b_A 160 HLDDVER-ICKAAL---NTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKT 235 (452)
T ss_dssp GHHHHHH-HHHHHT---TTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHH
T ss_pred CHHHHHH-HHHHHH---cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHH
Confidence 3322111 123333 345569999999999999 999999999999999999999999999999766 79999
Q ss_pred HHHHHHHHhcCCCCCCChHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhch
Q 013299 214 ALNLLRTLLSGSEDPKCLPALLIASKICG--EYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITD 291 (446)
Q Consensus 214 A~~~~~~al~~~~~P~~~~a~~~~~~~~~--~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~ 291 (446)
|+..|+++. |+++.+++.+|.+++ ...+++++|+.+|+++++. . + +.+++.+|.+|.. |.-.
T Consensus 236 A~~~~~~aa-----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g-~-----~~A~~~Lg~~y~~-G~g~--- 299 (452)
T 3e4b_A 236 AQALLEKIA-----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D-Q-----PRAELLLGKLYYE-GKWV--- 299 (452)
T ss_dssp HHHHHHHHG-----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T-C-----HHHHHHHHHHHHH-CSSS---
T ss_pred HHHHHHHHc-----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C-C-----HHHHHHHHHHHHc-CCCC---
Confidence 999999965 889999999988755 5578999999999999973 2 2 6799999999863 2100
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH---
Q 013299 292 FDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAE----QRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSA--- 364 (446)
Q Consensus 292 ~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~----~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~--- 364 (446)
..++++|+.+|++++ |+++.++++||.+|.. ..++++|+..|++|.+ ++++ .+.+++|.++..
T Consensus 300 ---~~d~~~A~~~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~-~A~~~Lg~~y~~G~g 369 (452)
T 3e4b_A 300 ---PADAKAAEAHFEKAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQN-SADFAIAQLFSQGKG 369 (452)
T ss_dssp ---CCCHHHHHHHHHTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCT-THHHHHHHHHHSCTT
T ss_pred ---CCCHHHHHHHHHHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChH-HHHHHHHHHHHhCCC
Confidence 126899999999865 9999999999999887 4499999999999977 5664 899999999985
Q ss_pred -ccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHH--HhCCHHHHHHHHHHHHHHHhh
Q 013299 365 -QKRYEDAETILNAALDQTGKWEQGELLRTKAKVQL--VQGQLKGAVETYTHLLAALQV 420 (446)
Q Consensus 365 -~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~--~~g~~~eA~~~~~~~l~l~~~ 420 (446)
.+++++|..+|++|.+..+ ..+...++.+.. ..++..+|....++...-.+.
T Consensus 370 ~~~d~~~A~~~~~~A~~~g~----~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~~~~ 424 (452)
T 3e4b_A 370 TKPDPLNAYVFSQLAKAQDT----PEANDLATQLEAPLTPAQRAEGQRLVQQELAARGT 424 (452)
T ss_dssp BCCCHHHHHHHHHHHHTTCC----HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCC----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccc
Confidence 5689999999999998644 455566666543 334566777777766665443
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.86 E-value=9.8e-21 Score=187.04 Aligned_cols=242 Identities=14% Similarity=0.056 Sum_probs=201.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhCCCC------CCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCC------
Q 013299 163 ILDHLSFAFSIAGDLSSLATQIEELLPGI------INRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKC------ 230 (446)
Q Consensus 163 ~~~~lg~~l~~~~~~~~A~~~~~~al~~~------p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~------ 230 (446)
.++.+|..+...|++++|+..|++++++. |..+.+++++|.++...|++++|+..+++++ .+.|+.
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al--~~~~~~~~~~~~ 180 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQAL--DIYQNHPLYSIR 180 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHTSTTCHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH--HHHHhCCCchhh
Confidence 56788999999999999999999999873 3456799999999999999999999999999 554432
Q ss_pred -hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC-CcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHH
Q 013299 231 -LPALLIASKICGEYPDLAEEGATFASRALECLGD-GCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSA 308 (446)
Q Consensus 231 -~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~-~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~a 308 (446)
..++..+|.++ ...|++++|+.+++++++..+. .+......++.++|.+|..+ |++++|+.+|+++
T Consensus 181 ~~~~~~~lg~~y-~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~-----------~~~~~A~~~~~~a 248 (378)
T 3q15_A 181 TIQSLFVIAGNY-DDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRS-----------GDDQMAVEHFQKA 248 (378)
T ss_dssp HHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-----------TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC-----------CCHHHHHHHHHHH
Confidence 33455666554 5579999999999999996432 22334577899999999764 5789999999999
Q ss_pred HHh-----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC-----CCCHHHHHHHHHHHHHccC---HHHHHHHH
Q 013299 309 ARS-----TNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEG-----GSNLKGWLLMARILSAQKR---YEDAETIL 375 (446)
Q Consensus 309 l~~-----~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P-----~~~~~~~~~la~~~~~~g~---~~eA~~~~ 375 (446)
+ + .+|..+.+++++|.++..+|++++|+.++++++.+.+ .. ...+..++.++...|+ +.+|+.++
T Consensus 249 l-~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~l~~ly~~~~~~~~~~~al~~~ 326 (378)
T 3q15_A 249 A-KVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFY-KELFLFLQAVYKETVDERKIHDLLSYF 326 (378)
T ss_dssp H-HHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCH-HHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred H-HHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 9 9 8899999999999999999999999999999999854 33 2456778888888888 88888888
Q ss_pred HHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhh
Q 013299 376 NAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTK 423 (446)
Q Consensus 376 ~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~ 423 (446)
++. ...| +...++..+|.++...|++++|+..|++++++.++-.+
T Consensus 327 ~~~-~~~~--~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~ 371 (378)
T 3q15_A 327 EKK-NLHA--YIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILK 371 (378)
T ss_dssp HHT-TCHH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhC-CChh--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhc
Confidence 873 3344 56778889999999999999999999999999876544
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-20 Score=176.62 Aligned_cols=205 Identities=13% Similarity=0.027 Sum_probs=171.1
Q ss_pred cccCccccCCCcHHHHHHHHHHHHHHHHhhcCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCc---HHHHH
Q 013299 126 SQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWD---PSILDHLSFAFSIAGDLSSLATQIEELLPGIINR---KERYH 199 (446)
Q Consensus 126 ~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~---~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~---~~~~~ 199 (446)
+..+..+...|++++|+..+ +.++...|++ +.+++.+|.++...|++++|+..|+++++..|++ +.+++
T Consensus 19 ~~~a~~~~~~g~~~~A~~~~-----~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 19 FERAMEFYNQGKYDRAIEYF-----KAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHH-----HHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHH-----HHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 45677889999999999986 6678899999 8999999999999999999999999999998754 67899
Q ss_pred HHHHHHHH--------CCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhh
Q 013299 200 ILALCYYG--------AGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMES 271 (446)
Q Consensus 200 ~lg~~~~~--------~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~ 271 (446)
.+|.++.. .|++++|+..|++++ ..+|+++.+......+ ..... ...
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l--~~~p~~~~~~~a~~~~---------------~~~~~--------~~~ 148 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFI--DRYPNHELVDDATQKI---------------RELRA--------KLA 148 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHH--HHCTTCTTHHHHHHHH---------------HHHHH--------HHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHH--HHCcCchhHHHHHHHH---------------HHHHH--------HHH
Confidence 99999999 999999999999999 8999988765432221 11111 124
Q ss_pred HHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHc----------CCHHHHHH
Q 013299 272 TANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMR---DLSILYRLSLEYAEQ----------RKLNAAHY 338 (446)
Q Consensus 272 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~---~~~a~~~lg~~~~~~----------~~~~~A~~ 338 (446)
..++.+|.+|... |++++|+..|++++ +.+|+ .+.+++.+|.++..+ |++++|+.
T Consensus 149 ~~~~~la~~~~~~-----------g~~~~A~~~~~~~l-~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~ 216 (261)
T 3qky_A 149 RKQYEAARLYERR-----------ELYEAAAVTYEAVF-DAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVE 216 (261)
T ss_dssp HHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-----------cCHHHHHHHHHHHH-HHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHH
Confidence 5678899988664 57899999999999 99999 567999999999977 99999999
Q ss_pred HHHHHHhhcCCCC--HHHHHHHHHHHHHccCHHHHH
Q 013299 339 YAKMLLKLEGGSN--LKGWLLMARILSAQKRYEDAE 372 (446)
Q Consensus 339 ~~~~al~l~P~~~--~~~~~~la~~~~~~g~~~eA~ 372 (446)
.|+++++..|+++ ..+...++.++..+++++++.
T Consensus 217 ~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 217 LYERLLQIFPDSPLLRTAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp HHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhhhh
Confidence 9999999999984 145667777777777776543
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.1e-20 Score=176.23 Aligned_cols=238 Identities=13% Similarity=0.064 Sum_probs=206.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHhhCCCCCCcHHHHHHHHHHH----HHC---
Q 013299 138 IEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAG--DLSSLATQIEELLPGIINRKERYHILALCY----YGA--- 208 (446)
Q Consensus 138 ~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~--~~~~A~~~~~~al~~~p~~~~~~~~lg~~~----~~~--- 208 (446)
.++|+.+. +.++..+|++..+|+..|.++...| +++++++++++++..+|++..+|+..+.++ ...
T Consensus 49 s~~aL~~t-----~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 49 SERALHIT-----ELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp SHHHHHHH-----HHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTC
T ss_pred CHHHHHHH-----HHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhcccc
Confidence 35777764 6788999999999999999999999 999999999999999999999999999999 777
Q ss_pred CChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHH--HHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhh
Q 013299 209 GEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAE--EGATFASRALECLGDGCDQMESTANCLLGISLSAQSK 286 (446)
Q Consensus 209 g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~--eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~ 286 (446)
+++++++..+.+++ ..+|++..++...+.++ ...+.++ +++.+++++++..+.+ ..+|.+.+.++...+.
T Consensus 124 ~~~~~EL~~~~~~l--~~~pkny~aW~~R~~vl-~~l~~~~~~~EL~~~~~~i~~d~~N-----~sAW~~R~~ll~~l~~ 195 (306)
T 3dra_A 124 FDPYREFDILEAML--SSDPKNHHVWSYRKWLV-DTFDLHNDAKELSFVDKVIDTDLKN-----NSAWSHRFFLLFSKKH 195 (306)
T ss_dssp CCTHHHHHHHHHHH--HHCTTCHHHHHHHHHHH-HHTTCTTCHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHSSGG
T ss_pred CCHHHHHHHHHHHH--HhCCCCHHHHHHHHHHH-HHhcccChHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHhccc
Confidence 89999999999999 89999999999887664 4467777 9999999999965544 5799999988866542
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhhc---CCCCHHHHHHHHHHH
Q 013299 287 VAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNA-AHYYAKMLLKLE---GGSNLKGWLLMARIL 362 (446)
Q Consensus 287 ~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~-A~~~~~~al~l~---P~~~~~~~~~la~~~ 362 (446)
.. ....++++++++++++ .++|+|..+|++++.++...|+..+ ....+.+++.++ |.+ ..++..++.++
T Consensus 196 ~~-----~~~~~~eEl~~~~~aI-~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~al~~la~~~ 268 (306)
T 3dra_A 196 LA-----TDNTIDEELNYVKDKI-VKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTS-SFALETLAKIY 268 (306)
T ss_dssp GC-----CHHHHHHHHHHHHHHH-HHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESC-HHHHHHHHHHH
T ss_pred cc-----hhhhHHHHHHHHHHHH-HhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCC-HHHHHHHHHHH
Confidence 10 1124899999999999 9999999999999999999998555 556888888887 888 49999999999
Q ss_pred HHccCHHHHHHHHHHHHh-hcCCCCcHHHHHHHHHH
Q 013299 363 SAQKRYEDAETILNAALD-QTGKWEQGELLRTKAKV 397 (446)
Q Consensus 363 ~~~g~~~eA~~~~~~al~-~~p~~~~~~~~~~~a~~ 397 (446)
..+|+.++|+.+|+.+.+ .+| -....|..++..
T Consensus 269 ~~~~~~~~A~~~~~~l~~~~Dp--ir~~yW~~~~~~ 302 (306)
T 3dra_A 269 TQQKKYNESRTVYDLLKSKYNP--IRSNFWDYQISK 302 (306)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCG--GGHHHHHHHHHT
T ss_pred HccCCHHHHHHHHHHHHhccCh--HHHHHHHHHHhh
Confidence 999999999999999997 799 888888887654
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.9e-21 Score=174.91 Aligned_cols=168 Identities=17% Similarity=0.049 Sum_probs=111.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHH----------------HHHHHHHCCChHHHHHHHHHHhc
Q 013299 160 DPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHI----------------LALCYYGAGEDLVALNLLRTLLS 223 (446)
Q Consensus 160 ~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~----------------lg~~~~~~g~~~eA~~~~~~al~ 223 (446)
+++.+...|..+...|++++|+..|++++..+|+++++|+. +|.++...|++++|+..|++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al- 81 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL- 81 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH-
Confidence 45667778888888888888888888888888888888888 7777777777777777777777
Q ss_pred CCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHH
Q 013299 224 GSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQ 303 (446)
Q Consensus 224 ~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~ 303 (446)
+++|+++.+++.+|.++.. . |++++|+.
T Consensus 82 -~~~p~~~~~~~~lg~~~~~-~--------------------------------------------------g~~~~A~~ 109 (208)
T 3urz_A 82 -QKAPNNVDCLEACAEMQVC-R--------------------------------------------------GQEKDALR 109 (208)
T ss_dssp -HHCTTCHHHHHHHHHHHHH-H--------------------------------------------------TCHHHHHH
T ss_pred -HHCCCCHHHHHHHHHHHHH-c--------------------------------------------------CCHHHHHH
Confidence 6777776666655544322 2 34566666
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 013299 304 ALVSAARSTNMRDLSILYRLSLEYAEQR--KLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQ 381 (446)
Q Consensus 304 ~~~~al~~~~P~~~~a~~~lg~~~~~~~--~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 381 (446)
+|++++ +++|+++.+++++|.++..+| +.+.+...+++++..+|. ..+++.+|.++..+|+|++|+.+|++++++
T Consensus 110 ~~~~al-~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 110 MYEKIL-QLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM--QYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHH-HHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH--HHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHH-HcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch--hHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 666666 666666666666666665544 334455566665443332 135566666666666666666666666666
Q ss_pred cC
Q 013299 382 TG 383 (446)
Q Consensus 382 ~p 383 (446)
+|
T Consensus 187 ~P 188 (208)
T 3urz_A 187 FP 188 (208)
T ss_dssp SC
T ss_pred CC
Confidence 66
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.4e-19 Score=158.01 Aligned_cols=170 Identities=14% Similarity=0.095 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHH
Q 013299 195 KERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTAN 274 (446)
Q Consensus 195 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~ 274 (446)
...++.+|.++...|++++|+..|++++ ..+|+++.++..++.++..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~~~~~~~~~~------------------------------- 54 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVY--DADAFDVDVALHLGIAYVK------------------------------- 54 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTC--CTTSCCHHHHHHHHHHHHH-------------------------------
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHH--HhCccChHHHHHHHHHHHH-------------------------------
Confidence 4566667777777777777777777777 6666665544443333211
Q ss_pred HHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHH
Q 013299 275 CLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKG 354 (446)
Q Consensus 275 ~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~ 354 (446)
.|++++|+..+++++ +.+|+++.+++.+|.++...|++++|+..+++++..+|++ ..+
T Consensus 55 --------------------~~~~~~A~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~ 112 (186)
T 3as5_A 55 --------------------TGAVDRGTELLERSL-ADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN-FNV 112 (186)
T ss_dssp --------------------TTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHH
T ss_pred --------------------cCCHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHh-HHH
Confidence 123456666666666 6666666666666666666666666666666666666666 366
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhh
Q 013299 355 WLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQ 421 (446)
Q Consensus 355 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~ 421 (446)
+..+|.++...|++++|+.+++++++..| ++..+++.+|.++...|++++|+..+++++++.|+.
T Consensus 113 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 177 (186)
T 3as5_A 113 RFRLGVALDNLGRFDEAIDSFKIALGLRP--NEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGA 177 (186)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHhcCc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 66666666666666666666666666666 566666666666666666666666666666666543
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.7e-21 Score=185.14 Aligned_cols=265 Identities=14% Similarity=0.082 Sum_probs=161.7
Q ss_pred HHHHHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHH
Q 013299 9 LLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRR 88 (446)
Q Consensus 9 ~~~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~ 88 (446)
.+++++..|.++...|++++|+..++++++..++......| ....++..+|.+|...|++++|+..|++
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~-----------~~~~~~~~la~~~~~~g~~~~A~~~~~~ 94 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHP-----------DVATMLNILALVYRDQNKYKDAANLLND 94 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSH-----------HHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCH-----------HHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 46789999999999999999999999999976554211111 2356788899999999999999999999
Q ss_pred HhCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHH
Q 013299 89 ALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLS 168 (446)
Q Consensus 89 al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg 168 (446)
++.. .... .-...|....++..+|
T Consensus 95 al~~----~~~~----------------------------------------------------~~~~~~~~~~~~~~l~ 118 (311)
T 3nf1_A 95 ALAI----REKT----------------------------------------------------LGKDHPAVAATLNNLA 118 (311)
T ss_dssp HHHH----HHHH----------------------------------------------------HCTTCHHHHHHHHHHH
T ss_pred HHHH----HHHH----------------------------------------------------hCCCChHHHHHHHHHH
Confidence 9886 1000 0001123344566777
Q ss_pred HHHHhcCCHHHHHHHHHhhCCC--------CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCC--------CCCChH
Q 013299 169 FAFSIAGDLSSLATQIEELLPG--------IINRKERYHILALCYYGAGEDLVALNLLRTLLSGSE--------DPKCLP 232 (446)
Q Consensus 169 ~~l~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~--------~P~~~~ 232 (446)
.++...|++++|+..|++++++ .|....+++.+|.++...|++++|+..|++++ .. +|..+.
T Consensus 119 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~--~~~~~~~~~~~~~~~~ 196 (311)
T 3nf1_A 119 VLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL--EIYQTKLGPDDPNVAK 196 (311)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH--HHHHHTSCTTCHHHHH
T ss_pred HHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHhCCCCHHHHH
Confidence 7777777777777777777765 25566677777777777777777777777777 44 455555
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC----cchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHH
Q 013299 233 ALLIASKICGEYPDLAEEGATFASRALECLGDG----CDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSA 308 (446)
Q Consensus 233 a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~----~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~a 308 (446)
++..++.++.. .|++++|+.+++++++..+.. ........+...+......+. ....+.+.+|+..++++
T Consensus 197 ~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~a~~~~~~~ 270 (311)
T 3nf1_A 197 TKNNLASCYLK-QGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGK-----QKDGTSFGEYGGWYKAC 270 (311)
T ss_dssp HHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC------------CCSCCCC------
T ss_pred HHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCc-----hhhHHHHHHHHHHHhhc
Confidence 56656555443 577777777777777642110 000001122222222111110 01123345566666666
Q ss_pred HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 013299 309 ARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG 349 (446)
Q Consensus 309 l~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~ 349 (446)
+ ..+|.++.+++.+|.++..+|++++|+.+|++++++.|+
T Consensus 271 ~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 271 K-VDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp ----CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred C-CCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 6 666777777777777777777777777777777776664
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-20 Score=170.81 Aligned_cols=186 Identities=11% Similarity=0.042 Sum_probs=155.9
Q ss_pred cHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHH
Q 013299 194 RKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTA 273 (446)
Q Consensus 194 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a 273 (446)
+++.++..|..+...|++++|+..|++++ ..+|+++.+++..+. ... ....+..
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al--~~~p~~~~~~~~~~~------~~~------------------~~~~~~~ 56 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTI--ALNIDRTEMYYWTNV------DKN------------------SEISSKL 56 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCHHHHHHHHHHHS------CTT------------------SHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHH--HhCCCChHHHHHhhh------cch------------------hhhhHHH
Confidence 57788999999999999999999999999 899999988765321 110 0112345
Q ss_pred HHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHH
Q 013299 274 NCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLK 353 (446)
Q Consensus 274 ~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~ 353 (446)
.+.+|.++... |++++|+..|++++ +++|+++.+++++|.++..+|++++|+..|+++++++|++ ..
T Consensus 57 ~~~lg~~~~~~-----------g~~~~A~~~~~~al-~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~-~~ 123 (208)
T 3urz_A 57 ATELALAYKKN-----------RNYDKAYLFYKELL-QKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN-LA 123 (208)
T ss_dssp HHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HH
T ss_pred HHHHHHHHHHC-----------CCHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-HH
Confidence 66789888664 57899999999999 9999999999999999999999999999999999999999 59
Q ss_pred HHHHHHHHHHHccC--HHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhh
Q 013299 354 GWLLMARILSAQKR--YEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQ 421 (446)
Q Consensus 354 ~~~~la~~~~~~g~--~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~ 421 (446)
+|+++|.++..+|+ .+.+...+++++...| ...+++.+|.++...|++++|+..|++++++.|+.
T Consensus 124 a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 124 ANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK---MQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC---CCCH---HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc---hhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 99999999988765 4567788888865443 34578899999999999999999999999999974
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.85 E-value=3.3e-19 Score=175.17 Aligned_cols=284 Identities=13% Similarity=-0.021 Sum_probs=206.4
Q ss_pred HHHHHHhHHHHHHhCChHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHH
Q 013299 63 NRAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAI 142 (446)
Q Consensus 63 ~~a~~~l~~~~~~~g~~~eA~~~y~~al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~ 142 (446)
..+....|.++...|++++|+..+++++...+..++..
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------------------------------------------ 51 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYS------------------------------------------ 51 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHH------------------------------------------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhH------------------------------------------
Confidence 45566778888999999999999999988721111100
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcH------HHHHHHHHHHHHCCChHHHHH
Q 013299 143 LLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRK------ERYHILALCYYGAGEDLVALN 216 (446)
Q Consensus 143 ~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~------~~~~~lg~~~~~~g~~~eA~~ 216 (446)
-..++..+|.++...|++++|+..+++++.+.|... .++.++|.++...|++++|+.
T Consensus 52 -----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~ 114 (373)
T 1hz4_A 52 -----------------RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWE 114 (373)
T ss_dssp -----------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred -----------------HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 012345677777788888888888888877654432 336778888888888888888
Q ss_pred HHHHHhcCCCC--------CCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhh
Q 013299 217 LLRTLLSGSED--------PKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVA 288 (446)
Q Consensus 217 ~~~~al~~~~~--------P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~ 288 (446)
.|++++ .+. |....++..++.+++. .|++++|+.+++++++..+.........++..+|.++...
T Consensus 115 ~~~~al--~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~---- 187 (373)
T 1hz4_A 115 TQEKAF--QLINEQHLEQLPMHEFLVRIRAQLLWA-WARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLAR---- 187 (373)
T ss_dssp HHHHHH--HHHHHTTCTTSTHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHH----
T ss_pred HHHHHH--HHHHHhccccCcHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHc----
Confidence 888888 443 2233445556655544 6888888888888888655432222346777888887554
Q ss_pred hchHHHHHHHHHHHHHHHHHHHhhCC--CCHHHHH-----HHHHHHHHcCCHHHHHHHHHHHHhhcCCCC---HHHHHHH
Q 013299 289 ITDFDRATRQAKALQALVSAARSTNM--RDLSILY-----RLSLEYAEQRKLNAAHYYAKMLLKLEGGSN---LKGWLLM 358 (446)
Q Consensus 289 ~~~~~~~~~~~eAl~~~~~al~~~~P--~~~~a~~-----~lg~~~~~~~~~~~A~~~~~~al~l~P~~~---~~~~~~l 358 (446)
|++++|+..+++++ .+.+ +++..+. .++.++...|++++|...+++++...|..+ ...+..+
T Consensus 188 -------g~~~~A~~~l~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~l 259 (373)
T 1hz4_A 188 -------GDLDNARSQLNRLE-NLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 259 (373)
T ss_dssp -------TCHHHHHHHHHHHH-HHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred -------CCHHHHHHHHHHHH-HHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHH
Confidence 67899999999999 7733 3322221 344557899999999999999998877531 1367889
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhcCCCC----cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Q 013299 359 ARILSAQKRYEDAETILNAALDQTGKWE----QGELLRTKAKVQLVQGQLKGAVETYTHLLAALQV 420 (446)
Q Consensus 359 a~~~~~~g~~~eA~~~~~~al~~~p~~~----~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~ 420 (446)
|.++..+|++++|+..+++++...+... ...++..+|.++...|++++|...+++++.+.+.
T Consensus 260 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~ 325 (373)
T 1hz4_A 260 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR 325 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999987754101 2357888999999999999999999999999864
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.84 E-value=8.9e-21 Score=166.81 Aligned_cols=170 Identities=16% Similarity=0.071 Sum_probs=143.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHH
Q 013299 157 IEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLI 236 (446)
Q Consensus 157 ~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~ 236 (446)
+|...+.+..+|..+...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|++++ ..+| ++..+..
T Consensus 2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~--~~~p-~~~~~~~ 78 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIP--LEYQ-DNSYKSL 78 (176)
T ss_dssp ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCC--GGGC-CHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhh--hccC-ChHHHHH
Confidence 455667788999999999999999999999999999999999999999999999999999999999 8899 7754432
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCC
Q 013299 237 ASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRD 316 (446)
Q Consensus 237 ~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~ 316 (446)
.+.+.+. . .+...+|+..|++++ +++|++
T Consensus 79 ~~~~~~~----------------~----------------------------------~~~~~~a~~~~~~al-~~~P~~ 107 (176)
T 2r5s_A 79 IAKLELH----------------Q----------------------------------QAAESPELKRLEQEL-AANPDN 107 (176)
T ss_dssp HHHHHHH----------------H----------------------------------HHTSCHHHHHHHHHH-HHSTTC
T ss_pred HHHHHHH----------------h----------------------------------hcccchHHHHHHHHH-HhCCCC
Confidence 2211100 0 001235788999999 999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 013299 317 LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN-LKGWLLMARILSAQKRYEDAETILNAALD 380 (446)
Q Consensus 317 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~-~~~~~~la~~~~~~g~~~eA~~~~~~al~ 380 (446)
+.+++++|.++...|++++|+..|+++++++|+.. ..+|.++|.++..+|++++|+..|++++.
T Consensus 108 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 108 FELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 99999999999999999999999999999999752 26999999999999999999999999985
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-20 Score=180.06 Aligned_cols=216 Identities=14% Similarity=0.004 Sum_probs=152.9
Q ss_pred CHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCC------ChHHHHHHHHHHhcCCCCHH
Q 013299 176 DLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPK------CLPALLIASKICGEYPDLAE 249 (446)
Q Consensus 176 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~------~~~a~~~~~~~~~~~~~~~~ 249 (446)
++++|+++|+++ |.+|...|++++|+..|++++ .+.+. ...++..+|.+ +...|+++
T Consensus 32 ~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al--~~~~~~~~~~~~a~~~~~lg~~-~~~~g~~~ 94 (292)
T 1qqe_A 32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAA--DYQKKAGNEDEAGNTYVEAYKC-FKSGGNSV 94 (292)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHH--HHHHHTTCHHHHHHHHHHHHHH-HHHTTCHH
T ss_pred cHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHH--HHHHHhCCHHHHHHHHHHHHHH-HHHCCCHH
Confidence 366666666665 556666677777777777666 44321 13344444443 34456677
Q ss_pred HHHHHHHHHHHHcCCC-cchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCC------HHHHHH
Q 013299 250 EGATFASRALECLGDG-CDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRD------LSILYR 322 (446)
Q Consensus 250 eA~~~~~~al~~~~~~-~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~------~~a~~~ 322 (446)
+|+.+|+++++..+.. .......++..+|.+|... .|++++|+.+|++++ ++.|++ ..++.+
T Consensus 95 ~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~----------lg~~~~A~~~~~~Al-~~~~~~~~~~~~~~~~~~ 163 (292)
T 1qqe_A 95 NAVDSLENAIQIFTHRGQFRRGANFKFELGEILEND----------LHDYAKAIDCYELAG-EWYAQDQSVALSNKCFIK 163 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT----------TCCHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh----------hcCHHHHHHHHHHHH-HHHHhCCChHHHHHHHHH
Confidence 7777777776654321 1112356788899888652 157899999999999 999865 578999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhcCCCCH------HHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHH-----H
Q 013299 323 LSLEYAEQRKLNAAHYYAKMLLKLEGGSNL------KGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGEL-----L 391 (446)
Q Consensus 323 lg~~~~~~~~~~~A~~~~~~al~l~P~~~~------~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~-----~ 391 (446)
+|.++..+|++++|+.+|++++.+.|+++. .++.++|.++..+|++++|+.+|+++++++| +.... +
T Consensus 164 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p--~~~~~~~~~~l 241 (292)
T 1qqe_A 164 CADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDP--NFADSRESNFL 241 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCCCcHHHHHH
Confidence 999999999999999999999999998741 1688999999999999999999999999999 54432 3
Q ss_pred HHHHHHHH--HhCCHHHHHHHHHHHHHHHhhh
Q 013299 392 RTKAKVQL--VQGQLKGAVETYTHLLAALQVQ 421 (446)
Q Consensus 392 ~~~a~~~~--~~g~~~eA~~~~~~~l~l~~~~ 421 (446)
..++..+. ..+++++|+..|++++.+.|.+
T Consensus 242 ~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 242 KSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp HHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 34444443 4678999999999888877644
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.9e-19 Score=157.17 Aligned_cols=169 Identities=16% Similarity=0.134 Sum_probs=143.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHH
Q 013299 160 DPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASK 239 (446)
Q Consensus 160 ~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~ 239 (446)
...++..+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..+++++ ..+|+++.++..++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~~~~a~ 84 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSL--ADAPDNVKVATVLGL 84 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHH--hcCCCCHHHHHHHHH
Confidence 356788999999999999999999999999999999999999999999999999999999999 788888766654443
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHH
Q 013299 240 ICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSI 319 (446)
Q Consensus 240 ~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a 319 (446)
++.. .|++++|+..|++++ +.+|+++.+
T Consensus 85 ~~~~---------------------------------------------------~~~~~~A~~~~~~~~-~~~~~~~~~ 112 (186)
T 3as5_A 85 TYVQ---------------------------------------------------VQKYDLAVPLLIKVA-EANPINFNV 112 (186)
T ss_dssp HHHH---------------------------------------------------HTCHHHHHHHHHHHH-HHCTTCHHH
T ss_pred HHHH---------------------------------------------------hcCHHHHHHHHHHHH-hcCcHhHHH
Confidence 3221 234677888888888 888888888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013299 320 LYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTG 383 (446)
Q Consensus 320 ~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 383 (446)
++.+|.++...|++++|+..+++++..+|++ ..++..+|.++..+|++++|+.+++++++..|
T Consensus 113 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 175 (186)
T 3as5_A 113 RFRLGVALDNLGRFDEAIDSFKIALGLRPNE-GKVHRAIAFSYEQMGRHEEALPHFKKANELDE 175 (186)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHhcCccc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 8888888888888888888888888888887 48888888888888888888888888888877
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=4.6e-21 Score=164.49 Aligned_cols=140 Identities=11% Similarity=0.023 Sum_probs=95.0
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHH
Q 013299 244 YPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRL 323 (446)
Q Consensus 244 ~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~l 323 (446)
..|++++|+..+++++...|. .+.+++.+|.+|... |++++|+..|++++ +++|+++.+|+++
T Consensus 9 ~~~~~e~ai~~~~~a~~~~p~-----~~~~~~~la~~y~~~-----------~~~~~A~~~~~~al-~~~p~~~~a~~~l 71 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPSPRQ-----KSIKGFYFAKLYYEA-----------KEYDLAKKYICTYI-NVQERDPKAHRFL 71 (150)
T ss_dssp CHHHHHHHHHHHHHHSCSHHH-----HHTTHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHCTTCHHHHHHH
T ss_pred HcChHHHHHHHHHHhcccCcc-----cHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-HhCCCCHHHHHHH
Confidence 344445555555544442111 133455555555443 45677777777777 7778777788888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHH-HHHHHhhcCCCCcHHHHHHHHHHHHHhC
Q 013299 324 SLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETI-LNAALDQTGKWEQGELLRTKAKVQLVQG 402 (446)
Q Consensus 324 g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~-~~~al~~~p~~~~~~~~~~~a~~~~~~g 402 (446)
|.++..+|++++|+..|+++++++|++ ..+|.++|.++..+|++++|... +++|++++| +++.++..++.++..+|
T Consensus 72 g~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P--~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 72 GLLYELEENTDKAVECYRRSVELNPTQ-KDLVLKIAELLCKNDVTDGRAKYWVERAAKLFP--GSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHST--TCHHHHHHHHHHHHTCC
T ss_pred HHHHHHcCchHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCc--CCHHHHHHHHHHHHHhC
Confidence 888777788888888888888888877 47777788777777777766554 477777777 77777777777777766
Q ss_pred C
Q 013299 403 Q 403 (446)
Q Consensus 403 ~ 403 (446)
+
T Consensus 149 ~ 149 (150)
T 4ga2_A 149 E 149 (150)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.84 E-value=8.2e-20 Score=180.53 Aligned_cols=234 Identities=10% Similarity=-0.033 Sum_probs=186.5
Q ss_pred cccCCCcHHHHHHHHHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCC-------CcHHHHHH
Q 013299 131 SFVPRNNIEEAILLLMILLRKVALKRIEW---DPSILDHLSFAFSIAGDLSSLATQIEELLPGII-------NRKERYHI 200 (446)
Q Consensus 131 ~~~~~~~~~eA~~~l~~~~~~~~l~~~p~---~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p-------~~~~~~~~ 200 (446)
.+...|++++|+..+..++. .....|+ .+.++..+|.++...|++++|+..|++++++.+ ....++++
T Consensus 112 ~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 189 (383)
T 3ulq_A 112 YELDQREYLSAIKFFKKAES--KLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHT--TGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHH--HHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 34567899999998743321 1122343 457999999999999999999999999998743 34568999
Q ss_pred HHHHHHHCCChHHHHHHHHHHhcCCCCCCCh------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcc-hhhhHH
Q 013299 201 LALCYYGAGEDLVALNLLRTLLSGSEDPKCL------PALLIASKICGEYPDLAEEGATFASRALECLGDGCD-QMESTA 273 (446)
Q Consensus 201 lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~------~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~-~~~~~a 273 (446)
+|.++...|++++|+..|++++ .+.|+.. .++..+|.++ ...|++++|+.+++++++....... +....+
T Consensus 190 lg~~~~~~g~~~~A~~~~~~al--~~~~~~~~~~~~~~~~~~lg~~y-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 266 (383)
T 3ulq_A 190 FATNFLDLKQYEDAISHFQKAY--SMAEAEKQPQLMGRTLYNIGLCK-NSQSQYEDAIPYFKRAIAVFEESNILPSLPQA 266 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH--HHHHHTTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHH--HHHHHcCChHHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHhhccchhHHHH
Confidence 9999999999999999999999 6655432 3566666665 4579999999999999995432111 334788
Q ss_pred HHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhh-----CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHh
Q 013299 274 NCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARST-----NMRDLSILYRLSLEYAEQRK---LNAAHYYAKMLLK 345 (446)
Q Consensus 274 ~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~-----~P~~~~a~~~lg~~~~~~~~---~~~A~~~~~~al~ 345 (446)
+..+|.++... |++++|+..|++++ ++ +|.....+..+|.++...|+ +++|+..+++. .
T Consensus 267 ~~~l~~~~~~~-----------g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~ 333 (383)
T 3ulq_A 267 YFLITQIHYKL-----------GKIDKAHEYHSKGM-AYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-M 333 (383)
T ss_dssp HHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-T
T ss_pred HHHHHHHHHHC-----------CCHHHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-c
Confidence 99999999765 57899999999999 88 45555556789999999999 89999999887 4
Q ss_pred hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013299 346 LEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTG 383 (446)
Q Consensus 346 l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 383 (446)
..|.. ..++..+|.++..+|++++|+.+++++++...
T Consensus 334 ~~~~~-~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 334 LYADL-EDFAIDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp CHHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred CHHHH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 45555 47899999999999999999999999998765
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.3e-20 Score=198.93 Aligned_cols=175 Identities=14% Similarity=0.022 Sum_probs=154.5
Q ss_pred cCCCcHHHHHHHHHHHHHHHHh--------hcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHH
Q 013299 133 VPRNNIEEAILLLMILLRKVAL--------KRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALC 204 (446)
Q Consensus 133 ~~~~~~~eA~~~l~~~~~~~~l--------~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 204 (446)
...+++++|+..+ +.++ ..+|++++++..+|.++...|++++|++.|+++++.+|+++.+|+++|.+
T Consensus 402 ~~~~~~~~A~~~~-----~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~ 476 (681)
T 2pzi_A 402 TVLSQPVQTLDSL-----RAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVA 476 (681)
T ss_dssp TTTCCHHHHHHHH-----HHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred ccccCHHHHHHHH-----HHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHH
Confidence 4578899999876 4556 78899999999999999999999999999999999999999999999999
Q ss_pred HHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhh
Q 013299 205 YYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQ 284 (446)
Q Consensus 205 ~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~ 284 (446)
+...|++++|+..|++++ +++|+++.+++.+|.++.. .|++++ +.+|+++++..|.+ ..+++++|.++...
T Consensus 477 ~~~~g~~~~A~~~~~~al--~l~P~~~~~~~~lg~~~~~-~g~~~~-~~~~~~al~~~P~~-----~~a~~~lg~~~~~~ 547 (681)
T 2pzi_A 477 ELLTGDYDSATKHFTEVL--DTFPGELAPKLALAATAEL-AGNTDE-HKFYQTVWSTNDGV-----ISAAFGLARARSAE 547 (681)
T ss_dssp HHHHTCHHHHHHHHHHHH--HHSTTCSHHHHHHHHHHHH-HTCCCT-TCHHHHHHHHCTTC-----HHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHH--HhCCCChHHHHHHHHHHHH-cCChHH-HHHHHHHHHhCCch-----HHHHHHHHHHHHHc
Confidence 999999999999999999 8999999999988877554 789999 99999999965544 57999999999765
Q ss_pred hhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 013299 285 SKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKL 333 (446)
Q Consensus 285 ~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~ 333 (446)
|++++|+..|++++ +++|+++.+++++|.++...++.
T Consensus 548 -----------g~~~~A~~~~~~al-~l~P~~~~a~~~~~~~~~~~~~~ 584 (681)
T 2pzi_A 548 -----------GDRVGAVRTLDEVP-PTSRHFTTARLTSAVTLLSGRST 584 (681)
T ss_dssp -----------TCHHHHHHHHHTSC-TTSTTHHHHHHHHHHHTC-----
T ss_pred -----------CCHHHHHHHHHhhc-ccCcccHHHHHHHHHHHHccCCC
Confidence 57899999999999 99999999999999999877663
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=9.2e-21 Score=162.58 Aligned_cols=136 Identities=9% Similarity=0.123 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHH
Q 013299 295 ATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETI 374 (446)
Q Consensus 295 ~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~ 374 (446)
.+++++|+..+++++ ..+|+++.+++++|.+|..+|++++|+.+|+++++++|++ ..+|.++|.++..+|++++|+.+
T Consensus 10 ~~~~e~ai~~~~~a~-~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~-~~a~~~lg~~~~~~~~~~~A~~~ 87 (150)
T 4ga2_A 10 KADVERYIASVQGST-PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD-PKAHRFLGLLYELEENTDKAVEC 87 (150)
T ss_dssp HHHHHHHHHHHHHHS-CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cChHHHHHHHHHHhc-ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCchHHHHHH
Confidence 367899999999999 9999999999999999999999999999999999999999 59999999999999999999999
Q ss_pred HHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHH-HHHHHHHhhhhhhccCCcchhhHHhhhhccccC
Q 013299 375 LNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETY-THLLAALQVQTKTFSSDKRFYKVYFMRKRVSTK 444 (446)
Q Consensus 375 ~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~-~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (446)
|+++++++| +++.+++.+|.++..+|++++|.+.| ++++++. |+.+.+|..++++...
T Consensus 88 ~~~al~~~p--~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~----------P~~~~~~~l~~~ll~~ 146 (150)
T 4ga2_A 88 YRRSVELNP--TQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF----------PGSPAVYKLKEQLLDC 146 (150)
T ss_dssp HHHHHHHCT--TCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS----------TTCHHHHHHHHHHHHT
T ss_pred HHHHHHhCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC----------cCCHHHHHHHHHHHHH
Confidence 999999999 89999999999999999999888765 9999997 5666778888777654
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=2.4e-20 Score=177.98 Aligned_cols=212 Identities=7% Similarity=-0.045 Sum_probs=166.3
Q ss_pred HHHHHHhcCCHHHHHHHHHhhCCCCC------CcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCC------hHHH
Q 013299 167 LSFAFSIAGDLSSLATQIEELLPGII------NRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKC------LPAL 234 (446)
Q Consensus 167 lg~~l~~~~~~~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~------~~a~ 234 (446)
.|.++...|++++|+++|++++.+.+ ..+.+|.++|.+|...|++++|+..|++++ .+.|+. ..++
T Consensus 43 a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al--~l~~~~g~~~~~a~~~ 120 (292)
T 1qqe_A 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAI--QIFTHRGQFRRGANFK 120 (292)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHTTCHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH--HHHHHcCCHHHHHHHH
Confidence 36788899999999999999998743 226799999999999999999999999999 777753 3456
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCc-chhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhC
Q 013299 235 LIASKICGEYPDLAEEGATFASRALECLGDGC-DQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTN 313 (446)
Q Consensus 235 ~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~-~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~ 313 (446)
..+|.++....|++++|+.+|+++++..+... ......++..+|.++... |++++|+..|++++ ++.
T Consensus 121 ~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~-----------g~~~~A~~~~~~al-~~~ 188 (292)
T 1qqe_A 121 FELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALD-----------GQYIEASDIYSKLI-KSS 188 (292)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HTT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHh-----------CCHHHHHHHHHHHH-HHH
Confidence 66776654434999999999999999765332 122356788899998664 57999999999999 999
Q ss_pred CCCHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHH-----HHHHHHHHH--HccCHHHHHHHHHHHH
Q 013299 314 MRDLS-------ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKG-----WLLMARILS--AQKRYEDAETILNAAL 379 (446)
Q Consensus 314 P~~~~-------a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~-----~~~la~~~~--~~g~~~eA~~~~~~al 379 (446)
|++.. +++++|.++..+|++++|+.+|++++.++|+.. .+ +..++..+. ..+++++|+..|++++
T Consensus 189 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 189 MGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFA-DSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp SSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred hcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC-CcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 98764 678999999999999999999999999999873 43 344555553 4678999999999999
Q ss_pred hhcCCCCcHHHHHHHH
Q 013299 380 DQTGKWEQGELLRTKA 395 (446)
Q Consensus 380 ~~~p~~~~~~~~~~~a 395 (446)
.++| .+..++...-
T Consensus 268 ~l~~--~~~~~~~~~k 281 (292)
T 1qqe_A 268 RLDK--WKITILNKIK 281 (292)
T ss_dssp CCCH--HHHHHHHHHH
T ss_pred ccHH--HHHHHHHHHH
Confidence 9999 6655555443
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.83 E-value=9.2e-19 Score=171.98 Aligned_cols=293 Identities=15% Similarity=0.042 Sum_probs=217.2
Q ss_pred hHHHHHHHHHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHH
Q 013299 4 HAISLLLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETI 83 (446)
Q Consensus 4 ~~~~~~~~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~ 83 (446)
+...+-.+++..+|..+...|++++|+..++++++.. |... ......++..+|.++...|++++|+
T Consensus 8 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--------~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~ 73 (373)
T 1hz4_A 8 REDTMHAEFNALRAQVAINDGNPDEAERLAKLALEEL--------PPGW------FYSRIVATSVLGEVLHCKGELTRSL 73 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--------CTTC------HHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--------CCCc------hhHHHHHHHHHHHHHHhcCcHHHHH
Confidence 4455668889999999999999999999999999852 2110 0113356778899999999999999
Q ss_pred HHHHHHhCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHH
Q 013299 84 MSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSI 163 (446)
Q Consensus 84 ~~y~~al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~ 163 (446)
..|++++.. .+.. +... ....+
T Consensus 74 ~~~~~al~~----~~~~-----------------------------------~~~~-------------------~~~~~ 95 (373)
T 1hz4_A 74 ALMQQTEQM----ARQH-----------------------------------DVWH-------------------YALWS 95 (373)
T ss_dssp HHHHHHHHH----HHHT-----------------------------------TCHH-------------------HHHHH
T ss_pred HHHHHHHHH----HHhc-----------------------------------CcHH-------------------HHHHH
Confidence 999999987 2211 0000 00234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhCCCC--------CCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCC-----
Q 013299 164 LDHLSFAFSIAGDLSSLATQIEELLPGI--------INRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKC----- 230 (446)
Q Consensus 164 ~~~lg~~l~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~----- 230 (446)
+..+|.++...|++++|+..|++++++. |....++.++|.++...|++++|+..+++++ ...|..
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al--~~~~~~~~~~~ 173 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGI--EVLSSYQPQQQ 173 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHTTTSCGGGG
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHhhccCcHHH
Confidence 5678888888899999999888888764 4456678889999999999999999999988 565542
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHH--HhhchhHhhhhhhhchHHHHHHHHHHHHHHHHH
Q 013299 231 LPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANC--LLGISLSAQSKVAITDFDRATRQAKALQALVSA 308 (446)
Q Consensus 231 ~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~--~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~a 308 (446)
..++..++.++.. .|++++|+.+++++++..+.........+.. .++.++. ..|++++|...++++
T Consensus 174 ~~~~~~la~~~~~-~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~g~~~~A~~~~~~a 241 (373)
T 1hz4_A 174 LQCLAMLIQCSLA-RGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQ-----------MTGDKAAAANWLRHT 241 (373)
T ss_dssp HHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-----------HTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHH-----------HCCCHHHHHHHHHhC
Confidence 3345556665444 6889999999999988643321111111111 1222232 246789999999999
Q ss_pred HHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC-----CHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 013299 309 ARSTNMRD----LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS-----NLKGWLLMARILSAQKRYEDAETILNAAL 379 (446)
Q Consensus 309 l~~~~P~~----~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~-----~~~~~~~la~~~~~~g~~~eA~~~~~~al 379 (446)
+ ...|.+ ..++..+|.++...|++++|+..+++++...+.. ...++..+|.++..+|++++|...+++++
T Consensus 242 ~-~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 242 A-KPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp C-CCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred C-CCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9 888764 3467899999999999999999999999886542 12478889999999999999999999999
Q ss_pred hhcC
Q 013299 380 DQTG 383 (446)
Q Consensus 380 ~~~p 383 (446)
...+
T Consensus 321 ~~~~ 324 (373)
T 1hz4_A 321 KLAN 324 (373)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8876
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.2e-18 Score=165.98 Aligned_cols=229 Identities=13% Similarity=0.012 Sum_probs=178.0
Q ss_pred HhcCCH-HHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCC----------hHHHHHHHHHHhcCCCCCCChHHHHHHHHH
Q 013299 172 SIAGDL-SSLATQIEELLPGIINRKERYHILALCYYGAGE----------DLVALNLLRTLLSGSEDPKCLPALLIASKI 240 (446)
Q Consensus 172 ~~~~~~-~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~----------~~eA~~~~~~al~~~~~P~~~~a~~~~~~~ 240 (446)
...|.+ ++|++++++++.++|++..+|+..+.++...|+ +++++..+..++ ..+|++..++...+.+
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L--~~~PKny~aW~hR~wl 117 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCL--RVNPKSYGTWHHRCWL 117 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH--HHCTTCHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHH--HhCCCCHHHHHHHHHH
Confidence 345555 478888888999999999999888888887776 678888888888 7889988888877766
Q ss_pred HhcCCC--CHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHH
Q 013299 241 CGEYPD--LAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLS 318 (446)
Q Consensus 241 ~~~~~~--~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~ 318 (446)
+.. .+ .+++++.++.++++..|.+ ..+|.+.+.+....+. .++++++++.+++ +.+|.|..
T Consensus 118 L~~-l~~~~~~~EL~~~~k~l~~dprN-----y~AW~~R~~vl~~l~~----------~~~eel~~~~~~I-~~~p~N~S 180 (331)
T 3dss_A 118 LSR-LPEPNWARELELCARFLEADERN-----FHCWDYRRFVAAQAAV----------APAEELAFTDSLI-TRNFSNYS 180 (331)
T ss_dssp HHH-CSSCCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTTC----------CHHHHHHHHHHHH-HHCSCCHH
T ss_pred Hhc-cCcccHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhCc----------CHHHHHHHHHHHH-HHCCCCHH
Confidence 443 45 4788888899988865544 5788888887755431 1578999999999 99999999
Q ss_pred HHHHHHHHHHHc--------------CCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHc-----------cCHHHHHH
Q 013299 319 ILYRLSLEYAEQ--------------RKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQ-----------KRYEDAET 373 (446)
Q Consensus 319 a~~~lg~~~~~~--------------~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~-----------g~~~eA~~ 373 (446)
+|.+++.++... +.+++++.++.+++.++|++ ..+|+.+..++... +.+++++.
T Consensus 181 AW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d-~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~ 259 (331)
T 3dss_A 181 SWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPND-QSAWFYHRWLLGAGSGRCELSVEKSTVLQSELE 259 (331)
T ss_dssp HHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhccCccccchHHHHHHHHHHH
Confidence 999999888876 56889999999999999998 58998776666655 56889999
Q ss_pred HHHHHHhhcCCCCcHHHHHHHHHHHH---HhCCHHHHHHHHHHHHHHHhhhh
Q 013299 374 ILNAALDQTGKWEQGELLRTKAKVQL---VQGQLKGAVETYTHLLAALQVQT 422 (446)
Q Consensus 374 ~~~~al~~~p~~~~~~~~~~~a~~~~---~~g~~~eA~~~~~~~l~l~~~~~ 422 (446)
+++++++..| ++.-.+..++.+.. ..|..++....+.++++++|...
T Consensus 260 ~~~elle~~p--d~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~ 309 (331)
T 3dss_A 260 SCKELQELEP--ENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRA 309 (331)
T ss_dssp HHHHHHHHCT--TCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHhhCc--ccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchh
Confidence 9999999999 77444433333322 35778888999999999987643
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.82 E-value=4.5e-20 Score=172.37 Aligned_cols=208 Identities=17% Similarity=0.108 Sum_probs=146.7
Q ss_pred CCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCC--------CCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc-
Q 013299 192 INRKERYHILALCYYGAGEDLVALNLLRTLLSGSE--------DPKCLPALLIASKICGEYPDLAEEGATFASRALECL- 262 (446)
Q Consensus 192 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~--------~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~- 262 (446)
|..+.+++.+|.++...|++++|+..|++++ .+ +|....++..+|.++ ...|++++|+.+++++++..
T Consensus 40 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al--~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~~ 116 (283)
T 3edt_B 40 PDVATMLNILALVYRDQNKYKEAAHLLNDAL--AIREKTLGKDHPAVAATLNNLAVLY-GKRGKYKEAEPLCKRALEIRE 116 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHHTCTTCHHHHHHHHHHHHHH-HTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHH--HHHHHHcCCcchHHHHHHHHHHHHH-HHhccHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666666666666 33 233344455554443 33566666666666666542
Q ss_pred ---CCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcC
Q 013299 263 ---GDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARST--------NMRDLSILYRLSLEYAEQR 331 (446)
Q Consensus 263 ---~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~--------~P~~~~a~~~lg~~~~~~~ 331 (446)
.++ .+....++..+|.++... |++++|+..|++++ ++ +|....++.++|.++..+|
T Consensus 117 ~~~~~~-~~~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~~la~~~~~~g 183 (283)
T 3edt_B 117 KVLGKF-HPDVAKQLNNLALLCQNQ-----------GKAEEVEYYYRRAL-EIYATRLGPDDPNVAKTKNNLASCYLKQG 183 (283)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHHHTT-----------TCHHHHHHHHHHHH-HHHHHHSCTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHcCCC-ChHHHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-HHHHHhcCCCCHHHHHHHHHHHHHHHHcC
Confidence 111 123467888899988765 56899999999999 98 7888899999999999999
Q ss_pred CHHHHHHHHHHHHhh---------cCCCCHHHHHHHHHHHHHccCHH------HHHHHHHHHHhhcCCCCcHHHHHHHHH
Q 013299 332 KLNAAHYYAKMLLKL---------EGGSNLKGWLLMARILSAQKRYE------DAETILNAALDQTGKWEQGELLRTKAK 396 (446)
Q Consensus 332 ~~~~A~~~~~~al~l---------~P~~~~~~~~~la~~~~~~g~~~------eA~~~~~~al~~~p~~~~~~~~~~~a~ 396 (446)
++++|+.++++++.+ .|... ..|..++......+.+. ++..+++......| +...++..+|.
T Consensus 184 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~la~ 260 (283)
T 3edt_B 184 KYQDAETLYKEILTRAHEKEFGSVNGDNK-PIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSP--TVNTTLRSLGA 260 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSSSCCSSCC-CHHHHHHHHHHTTCCCCC------------CCCCCCH--HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCcchhHH-HHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHH
Confidence 999999999999987 45553 78888888777655544 44444444433445 67888999999
Q ss_pred HHHHhCCHHHHHHHHHHHHHHH
Q 013299 397 VQLVQGQLKGAVETYTHLLAAL 418 (446)
Q Consensus 397 ~~~~~g~~~eA~~~~~~~l~l~ 418 (446)
++..+|++++|+..|++++++.
T Consensus 261 ~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 261 LYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHcCCHHHHHHHHHHHHHhh
Confidence 9999999999999999999864
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.81 E-value=4.5e-19 Score=162.33 Aligned_cols=206 Identities=10% Similarity=-0.041 Sum_probs=146.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcH---HHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChH---H
Q 013299 160 DPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRK---ERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLP---A 233 (446)
Q Consensus 160 ~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~---a 233 (446)
++.+++.+|..+...|++++|+..|+++++..|+++ .+++.+|.++...|++++|+..|++++ +.+|+++. +
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l--~~~P~~~~~~~a 80 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFI--RLNPTHPNIDYV 80 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH--HHCcCCCcHHHH
Confidence 567889999999999999999999999999888774 799999999999999999999999999 89999875 5
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhC
Q 013299 234 LLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTN 313 (446)
Q Consensus 234 ~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~ 313 (446)
++.+|.+++. .+. .. ...+..++..+.. .|++++|+..|++++ +.+
T Consensus 81 ~~~~g~~~~~-~~~-----~~----------------~~~~~~~~~~~~~-----------~~~~~~A~~~~~~~l-~~~ 126 (225)
T 2yhc_A 81 MYMRGLTNMA-LDD-----SA----------------LQGFFGVDRSDRD-----------PQQARAAFSDFSKLV-RGY 126 (225)
T ss_dssp HHHHHHHHHH-HHC-----------------------------------C-----------CHHHHHHHHHHHHHH-TTC
T ss_pred HHHHHHHHHh-hhh-----hh----------------hhhhhccchhhcC-----------cHHHHHHHHHHHHHH-HHC
Confidence 5655554432 110 00 1122333433322 357899999999999 999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcH---HH
Q 013299 314 MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQG---EL 390 (446)
Q Consensus 314 P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~---~~ 390 (446)
|+++.++..+..+.. +.+.. ......+|.++..+|++++|+..|+++++.+| +++ .+
T Consensus 127 P~~~~a~~a~~~l~~-----------------~~~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p--~~~~~~~a 186 (225)
T 2yhc_A 127 PNSQYTTDATKRLVF-----------------LKDRL-AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYP--DTQATRDA 186 (225)
T ss_dssp TTCTTHHHHHHHHHH-----------------HHHHH-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST--TSHHHHHH
T ss_pred cCChhHHHHHHHHHH-----------------HHHHH-HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCc--CCCccHHH
Confidence 999876543222111 11111 24455677888888888888888888888877 543 66
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHhhh
Q 013299 391 LRTKAKVQLVQGQLKGAVETYTHLLAALQVQ 421 (446)
Q Consensus 391 ~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~ 421 (446)
++.+|.++.++|++++|++.++++....|+.
T Consensus 187 ~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 187 LPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 7888888888888888888888777665543
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=3.1e-19 Score=169.94 Aligned_cols=171 Identities=13% Similarity=0.063 Sum_probs=148.3
Q ss_pred hcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHH
Q 013299 155 KRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPAL 234 (446)
Q Consensus 155 ~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~ 234 (446)
...|.+++.+..+|..+...|++++|++.|+++++.+|+++++++.||.++...|++++|+..|++++ ..+|+.....
T Consensus 111 ~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~--~~~p~~~~~~ 188 (287)
T 3qou_A 111 XVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIP--LQDQDTRYQG 188 (287)
T ss_dssp HHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSC--GGGCSHHHHH
T ss_pred HHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCc--hhhcchHHHH
Confidence 33499999999999999999999999999999999999999999999999999999999999999999 8899543222
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCC
Q 013299 235 LIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNM 314 (446)
Q Consensus 235 ~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P 314 (446)
+ .+.+. +. ..++.++|+..|++++ +.+|
T Consensus 189 ~-~~~~~---------------------------------------l~-----------~~~~~~~a~~~l~~al-~~~P 216 (287)
T 3qou_A 189 L-VAQIE---------------------------------------LL-----------XQAADTPEIQQLQQQV-AENP 216 (287)
T ss_dssp H-HHHHH---------------------------------------HH-----------HHHTSCHHHHHHHHHH-HHCT
T ss_pred H-HHHHH---------------------------------------HH-----------hhcccCccHHHHHHHH-hcCC
Confidence 2 11111 10 1133467899999999 9999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 013299 315 RDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS--NLKGWLLMARILSAQKRYEDAETILNAALD 380 (446)
Q Consensus 315 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~--~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 380 (446)
+++.+++++|.++...|++++|+..|+++++++|++ + .++.+++.++..+|+.++|+..|++++.
T Consensus 217 ~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~-~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 217 EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADG-QTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGG-HHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccc-hHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 999999999999999999999999999999999987 5 8999999999999999999999999885
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.81 E-value=6.1e-20 Score=157.69 Aligned_cols=120 Identities=10% Similarity=0.113 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 013299 298 QAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNA 377 (446)
Q Consensus 298 ~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~ 377 (446)
+-.+-..+++++ +++|+++.+++.+|.++..+|++++|+..|++++.++|++ ..+|.++|.++..+|+|++|+.+|++
T Consensus 18 ~~~~~~~l~~al-~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~-~~~~~~lg~~~~~~g~~~~Ai~~~~~ 95 (151)
T 3gyz_A 18 AINSGATLKDIN-AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN-VDYIMGLAAIYQIKEQFQQAADLYAV 95 (151)
T ss_dssp HHHTSCCTGGGC-CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHCCCCHHHHh-CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 344556788999 9999999999999999999999999999999999999999 59999999999999999999999999
Q ss_pred HHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhh
Q 013299 378 ALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQ 421 (446)
Q Consensus 378 al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~ 421 (446)
+++++| +++.+|+++|.++..+|++++|+..|++++++.|+.
T Consensus 96 al~l~P--~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 96 AFALGK--NDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HHHHSS--SCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHhhCC--CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence 999999 899999999999999999999999999999998754
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.81 E-value=8.2e-19 Score=160.61 Aligned_cols=193 Identities=11% Similarity=-0.059 Sum_probs=130.2
Q ss_pred cHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCCh---HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhh
Q 013299 194 RKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCL---PALLIASKICGEYPDLAEEGATFASRALECLGDGCDQME 270 (446)
Q Consensus 194 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~---~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~ 270 (446)
.+..++.+|..++..|++++|+..|++++ ...|+++ .+++.+|.+++. .|++++|+..|+++++..|.+. ..
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~--~~~p~~~~~~~a~~~lg~~~~~-~~~~~~A~~~~~~~l~~~P~~~--~~ 77 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALD--NRYPFGPYSQQVQLDLIYAYYK-NADLPLAQAAIDRFIRLNPTHP--NI 77 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHH--HHCTTSTTHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCT--TH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhCCCChHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHCcCCC--cH
Confidence 56789999999999999999999999999 7888865 566766665544 6788888888888888655442 22
Q ss_pred hHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Q 013299 271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS 350 (446)
Q Consensus 271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~ 350 (446)
..+++.+|.++...+ +.....++.++.++..+|++++|+..|+++++..|++
T Consensus 78 ~~a~~~~g~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~ 129 (225)
T 2yhc_A 78 DYVMYMRGLTNMALD----------------------------DSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNS 129 (225)
T ss_dssp HHHHHHHHHHHHHHH----------------------------C--------------CCHHHHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHHHHHHhhh----------------------------hhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCC
Confidence 457777887775432 1112234456666667889999999999999999998
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhccCCcc
Q 013299 351 NLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKR 430 (446)
Q Consensus 351 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~~~~~~~ 430 (446)
+ .++..+..+.. +.+ ......+.+|.++...|++++|+..|+++++..|+.+.....-..
T Consensus 130 ~-~a~~a~~~l~~-----------------~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 189 (225)
T 2yhc_A 130 Q-YTTDATKRLVF-----------------LKD--RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPL 189 (225)
T ss_dssp T-THHHHHHHHHH-----------------HHH--HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHH
T ss_pred h-hHHHHHHHHHH-----------------HHH--HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHH
Confidence 5 65543322111 111 223445788999999999999999999999999987654433444
Q ss_pred hhhHHhhhh
Q 013299 431 FYKVYFMRK 439 (446)
Q Consensus 431 ~~~~~~~~~ 439 (446)
.-.+|+..+
T Consensus 190 l~~~~~~~g 198 (225)
T 2yhc_A 190 MENAYRQMQ 198 (225)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHcC
Confidence 444444443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.5e-17 Score=160.20 Aligned_cols=238 Identities=13% Similarity=0.009 Sum_probs=193.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHC
Q 013299 139 EEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGD----------LSSLATQIEELLPGIINRKERYHILALCYYGA 208 (446)
Q Consensus 139 ~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 208 (446)
++|+.+. +.++..+|++..+|+..+.++...+. +++++.+++.++..+|.+..+|+..+.++...
T Consensus 47 ~eaL~~t-----~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l 121 (331)
T 3dss_A 47 ESVLELT-----SQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL 121 (331)
T ss_dssp HHHHHHH-----HHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHH-----HHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcc
Confidence 4777764 77889999999999999999988776 68999999999999999999999999999999
Q ss_pred CC--hHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhh
Q 013299 209 GE--DLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDL-AEEGATFASRALECLGDGCDQMESTANCLLGISLSAQS 285 (446)
Q Consensus 209 g~--~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~-~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~ 285 (446)
|+ +++++..+.+++ ..+|.|..++...+.++.. .+. .++++.+++++|+..|.+ ..+|.++|.++....
T Consensus 122 ~~~~~~~EL~~~~k~l--~~dprNy~AW~~R~~vl~~-l~~~~~eel~~~~~~I~~~p~N-----~SAW~~R~~ll~~l~ 193 (331)
T 3dss_A 122 PEPNWARELELCARFL--EADERNFHCWDYRRFVAAQ-AAVAPAEELAFTDSLITRNFSN-----YSSWHYRSCLLPQLH 193 (331)
T ss_dssp SSCCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHCSCC-----HHHHHHHHHHHHHHS
T ss_pred CcccHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHCCCC-----HHHHHHHHHHHHHhh
Confidence 95 899999999999 8999999999988766544 566 699999999999965554 578999998876542
Q ss_pred hhhhch---HHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHhhcCCCC
Q 013299 286 KVAITD---FDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQ-----------RKLNAAHYYAKMLLKLEGGSN 351 (446)
Q Consensus 286 ~~~~~~---~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~-----------~~~~~A~~~~~~al~l~P~~~ 351 (446)
...... ....+.++++++++.+++ .++|+|..+|+++..++... +.++++++.++++++++|++
T Consensus 194 ~~~~~~~~~~~~~~~~~eEle~~~~ai-~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~- 271 (331)
T 3dss_A 194 PQPDSGPQGRLPENVLLKELELVQNAF-FTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN- 271 (331)
T ss_dssp CCC------CCCHHHHHHHHHHHHHHH-HHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-
T ss_pred hccccccccccchHHHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-
Confidence 110000 001257899999999999 99999999998777676655 46899999999999999997
Q ss_pred HHHHHHHHHHHH-----HccCHHHHHHHHHHHHhhcCCCCcHHHHHHHH
Q 013299 352 LKGWLLMARILS-----AQKRYEDAETILNAALDQTGKWEQGELLRTKA 395 (446)
Q Consensus 352 ~~~~~~la~~~~-----~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a 395 (446)
.|..++.++. ..|..++...++.+.++++| ....-|..++
T Consensus 272 --~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp--~r~~~y~d~~ 316 (331)
T 3dss_A 272 --KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP--MRAAYLDDLR 316 (331)
T ss_dssp --HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCG--GGHHHHHHHH
T ss_pred --chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCc--chhhHHHHHH
Confidence 3555554432 35788999999999999999 6655554443
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.6e-18 Score=167.58 Aligned_cols=248 Identities=10% Similarity=-0.048 Sum_probs=189.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCC-ChHHHHHHHHHHhcCCCCCCChHHHHH
Q 013299 158 EWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAG-EDLVALNLLRTLLSGSEDPKCLPALLI 236 (446)
Q Consensus 158 p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~eA~~~~~~al~~~~~P~~~~a~~~ 236 (446)
|+..+++..+..++...+..++|++.++++|.++|++..+|+..+.++...| ++++++..++++| ..+|++..++..
T Consensus 51 ~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L--~~nPKny~aW~h 128 (349)
T 3q7a_A 51 EEYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFA--VQNLKSYQVWHH 128 (349)
T ss_dssp HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH--HTTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHH--HhCCCcHHHHHH
Confidence 3445566666666666677788888888888888888888888888888888 4888888888888 788888888887
Q ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCC
Q 013299 237 ASKICGEYPD-LAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMR 315 (446)
Q Consensus 237 ~~~~~~~~~~-~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~ 315 (446)
.+.+.....+ ..++++.+++++++..|.+ ..+|.+.+.++...+...... .....++++.+.+++ +.+|.
T Consensus 129 R~wlL~~l~~~~~~~EL~~~~k~L~~dpkN-----y~AW~~R~wvl~~l~~~~~~~---~~~~~eELe~~~k~I-~~dp~ 199 (349)
T 3q7a_A 129 RLLLLDRISPQDPVSEIEYIHGSLLPDPKN-----YHTWAYLHWLYSHFSTLGRIS---EAQWGSELDWCNEML-RVDGR 199 (349)
T ss_dssp HHHHHHHHCCSCCHHHHHHHHHHTSSCTTC-----HHHHHHHHHHHHHHHHTTCCC---HHHHHHHHHHHHHHH-HHCTT
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhccccccc---hhhHHHHHHHHHHHH-HhCCC
Confidence 7666544325 7788888888888854443 578888888776554321100 122459999999999 99999
Q ss_pred CHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCH--------------------
Q 013299 316 DLSILYRLSLEYAEQRK-------LNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRY-------------------- 368 (446)
Q Consensus 316 ~~~a~~~lg~~~~~~~~-------~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~-------------------- 368 (446)
|..+|++++.++...++ +++++.++++++.++|++ ..+|+.+..++...|+-
T Consensus 200 N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n-~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (349)
T 3q7a_A 200 NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHN-VSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDI 278 (349)
T ss_dssp CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCCSGGGHHHHGGGTC-------
T ss_pred CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhcCCCcccccccccccccccccccc
Confidence 99999999999999887 899999999999999999 59999999999888774
Q ss_pred HHHHHHHHHHHhhc------CCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHH-HHHh
Q 013299 369 EDAETILNAALDQT------GKWEQGELLRTKAKVQLVQGQLKGAVETYTHLL-AALQ 419 (446)
Q Consensus 369 ~eA~~~~~~al~~~------p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l-~l~~ 419 (446)
.+-...+...+... + ..+.++..++.++.+.|+.++|+++|+.+. +.+|
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~--~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dp 334 (349)
T 3q7a_A 279 ETVEAFGFPMPSDPLPEDTPL--PVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQ 334 (349)
T ss_dssp -------CCCCC-CCCSSCCS--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCG
T ss_pred hhHHHHHHHHHhcccccccCC--CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhCh
Confidence 33333333333322 3 567889999999999999999999999876 4444
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.3e-19 Score=157.76 Aligned_cols=171 Identities=18% Similarity=0.038 Sum_probs=133.5
Q ss_pred CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhh
Q 013299 191 IINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQME 270 (446)
Q Consensus 191 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~ 270 (446)
+|...+.++.+|..+...|++++|+..|++++ ..+|+++.+++.+|.++.. .
T Consensus 2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al--~~~P~~~~a~~~la~~~~~-~------------------------- 53 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLS--DELQSRGDVKLAKADCLLE-T------------------------- 53 (176)
T ss_dssp ----CTTHHHHHHHHHHTTCHHHHHHHHHTSC--HHHHTSHHHHHHHHHHHHH-T-------------------------
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHCCCcHHHHHHHHHHHHH-C-------------------------
Confidence 34555667788888888888888888888888 7788887777666554332 2
Q ss_pred hHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhcCC
Q 013299 271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYA-EQRKLNAAHYYAKMLLKLEGG 349 (446)
Q Consensus 271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~-~~~~~~~A~~~~~~al~l~P~ 349 (446)
|++++|+..|++++ +.+| ++..+..++.+.. ..++..+|+..++++++++|+
T Consensus 54 -------------------------g~~~~A~~~~~~a~-~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~ 106 (176)
T 2r5s_A 54 -------------------------KQFELAQELLATIP-LEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPD 106 (176)
T ss_dssp -------------------------TCHHHHHHHHTTCC-GGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTT
T ss_pred -------------------------CCHHHHHHHHHHhh-hccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCC
Confidence 34566777777777 7777 7766655554432 333445689999999999999
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 013299 350 SNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAA 417 (446)
Q Consensus 350 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l 417 (446)
+ ..+|+.+|.++..+|++++|+..|+++++.+|++.+..++.++|.++..+|+.++|+..|+++|..
T Consensus 107 ~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 107 N-FELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLYS 173 (176)
T ss_dssp C-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred C-HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 9 599999999999999999999999999999993334679999999999999999999999999874
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.80 E-value=8.3e-20 Score=170.56 Aligned_cols=251 Identities=15% Similarity=0.087 Sum_probs=164.8
Q ss_pred hcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHhCCCCCCChHH
Q 013299 21 QGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRALLPCWNLDAET 100 (446)
Q Consensus 21 ~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~al~~~~~~~~~~ 100 (446)
...|++++|+..|+++++...+......|. ...++..+|.+|...|++++|+..|+++++. ....
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----~~~~ 76 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPD-----------VATMLNILALVYRDQNKYKEAAHLLNDALAI----REKT 76 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHH-----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----HHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHH-----------HHHHHHHHHHHHHHcccHHHHHHHHHHHHHH----HHHH
Confidence 467899999999999999876654222222 3568888999999999999999999999886 1000
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHH
Q 013299 101 TAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSL 180 (446)
Q Consensus 101 ~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A 180 (446)
.-...|..+.++..+|.++...|++++|
T Consensus 77 ----------------------------------------------------~~~~~~~~~~~~~~l~~~~~~~g~~~~A 104 (283)
T 3edt_B 77 ----------------------------------------------------LGKDHPAVAATLNNLAVLYGKRGKYKEA 104 (283)
T ss_dssp ----------------------------------------------------TCTTCHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred ----------------------------------------------------cCCcchHHHHHHHHHHHHHHHhccHHHH
Confidence 0011133455677788888888888888
Q ss_pred HHHHHhhCCC--------CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCC--------CCCChHHHHHHHHHHhcC
Q 013299 181 ATQIEELLPG--------IINRKERYHILALCYYGAGEDLVALNLLRTLLSGSE--------DPKCLPALLIASKICGEY 244 (446)
Q Consensus 181 ~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~--------~P~~~~a~~~~~~~~~~~ 244 (446)
++.|++++.+ +|....+++++|.++...|++++|+..|++++ .. +|....++..+|.++..
T Consensus 105 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al--~~~~~~~~~~~~~~~~~~~~la~~~~~- 181 (283)
T 3edt_B 105 EPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRAL--EIYATRLGPDDPNVAKTKNNLASCYLK- 181 (283)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH--HHHHHHSCTTCHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHhcCCCCHHHHHHHHHHHHHHHH-
Confidence 8888888876 56777788888888888888888888888888 55 55556666666666544
Q ss_pred CCCHHHHHHHHHHHHHHcCCC----cchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHH
Q 013299 245 PDLAEEGATFASRALECLGDG----CDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSIL 320 (446)
Q Consensus 245 ~~~~~eA~~~~~~al~~~~~~----~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~ 320 (446)
.|++++|+.+++++++..+.. ........+..++..+...+.. .....+.++...++.+. ...|..+.++
T Consensus 182 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 255 (283)
T 3edt_B 182 QGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKR-----RDSAPYGEYGSWYKACK-VDSPTVNTTL 255 (283)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCC-----CC------------CCC-CCCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCch-----hHHHHHHHHHHHHHhcC-CCCHHHHHHH
Confidence 578888888888888752210 0011123344444433222111 11223556666666666 6667777788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 013299 321 YRLSLEYAEQRKLNAAHYYAKMLLKLE 347 (446)
Q Consensus 321 ~~lg~~~~~~~~~~~A~~~~~~al~l~ 347 (446)
..+|.++..+|++++|+.+|++++++.
T Consensus 256 ~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 256 RSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 888888888888888888888887653
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.80 E-value=7.3e-19 Score=146.09 Aligned_cols=113 Identities=12% Similarity=-0.027 Sum_probs=105.3
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCC
Q 013299 307 SAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWE 386 (446)
Q Consensus 307 ~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~ 386 (446)
++. .+||+.++++.++|..+.+.|++++|+..|+++++++|++ ..+|.++|.++..+|++++|+..|+++++++| +
T Consensus 4 r~a-~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--~ 79 (126)
T 4gco_A 4 RLA-YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPEN-AILYSNRAACLTKLMEFQRALDDCDTCIRLDS--K 79 (126)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--T
T ss_pred HHH-HHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh--h
Confidence 456 7999999999999999999999999999999999999999 59999999999999999999999999999999 8
Q ss_pred cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhh
Q 013299 387 QGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTK 423 (446)
Q Consensus 387 ~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~ 423 (446)
++.+|+++|.++..+|++++|++.|++++++.|++.+
T Consensus 80 ~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~ 116 (126)
T 4gco_A 80 FIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEE 116 (126)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred hhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHH
Confidence 9999999999999999999999999999999755443
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.4e-18 Score=165.38 Aligned_cols=169 Identities=15% Similarity=-0.011 Sum_probs=152.2
Q ss_pred CCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhh
Q 013299 192 INRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMES 271 (446)
Q Consensus 192 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~ 271 (446)
|++++.++.+|..+...|++++|+..|++++ ..+|+++.+++.+|.++.. .
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al--~~~P~~~~a~~~la~~~~~-~-------------------------- 164 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAW--QLSNQNGEIGLLLAETLIA-L-------------------------- 164 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHTTSCHHHHHHHHHHHHH-T--------------------------
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHH--HhCCcchhHHHHHHHHHHH-C--------------------------
Confidence 8899999999999999999999999999999 8999999888776655433 2
Q ss_pred HHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Q 013299 272 TANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN 351 (446)
Q Consensus 272 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~ 351 (446)
|++++|+..|++++ ..+|++...+...+..+...++.++|+..|++++.++|++
T Consensus 165 ------------------------g~~~~A~~~l~~~~-~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~- 218 (287)
T 3qou_A 165 ------------------------NRSEDAEAVLXTIP-LQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPED- 218 (287)
T ss_dssp ------------------------TCHHHHHHHHTTSC-GGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTC-
T ss_pred ------------------------CCHHHHHHHHHhCc-hhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCcc-
Confidence 34677777888888 8888777777788888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCc--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 013299 352 LKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQ--GELLRTKAKVQLVQGQLKGAVETYTHLLAA 417 (446)
Q Consensus 352 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~--~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l 417 (446)
..+++++|.++..+|++++|+..|+++++.+| ++ ..++.+++.++...|+.++|+..|++++..
T Consensus 219 ~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p--~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 219 AALATQLALQLHQVGRNEEALELLFGHLRXDL--TAADGQTRXTFQEILAALGTGDALASXYRRQLYA 284 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhccc--ccccchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 59999999999999999999999999999999 65 899999999999999999999999999875
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-18 Score=171.99 Aligned_cols=253 Identities=9% Similarity=0.002 Sum_probs=174.2
Q ss_pred HHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHhC
Q 013299 12 AIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRALL 91 (446)
Q Consensus 12 ~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~al~ 91 (446)
.++.+|..+...|++++|+..|+++++..... ++ ......++..+|.+|...|++++|+..|++++.
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~-----~~--------~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~ 169 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFV-----SD--------DIEKAEFHFKVAEAYYHMKQTHVSMYHILQALD 169 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC-----CC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhC-----CC--------hHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 57789999999999999999999998764321 11 112456788899999999999999999999988
Q ss_pred CCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Q 013299 92 PCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAF 171 (446)
Q Consensus 92 ~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l 171 (446)
. .+.. +.+. +..+.++..+|.++
T Consensus 170 ~----~~~~-----------------------------------~~~~------------------~~~~~~~~~lg~~y 192 (378)
T 3q15_A 170 I----YQNH-----------------------------------PLYS------------------IRTIQSLFVIAGNY 192 (378)
T ss_dssp H----HHTS-----------------------------------TTCH------------------HHHHHHHHHHHHHH
T ss_pred H----HHhC-----------------------------------CCch------------------hhHHHHHHHHHHHH
Confidence 6 1110 0000 11234667888888
Q ss_pred HhcCCHHHHHHHHHhhCCCCC------CcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCC-----CCCCChHHHHHHHHH
Q 013299 172 SIAGDLSSLATQIEELLPGII------NRKERYHILALCYYGAGEDLVALNLLRTLLSGS-----EDPKCLPALLIASKI 240 (446)
Q Consensus 172 ~~~~~~~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-----~~P~~~~a~~~~~~~ 240 (446)
...|++++|++.|++++++.+ ....+++++|.++...|++++|+..|++++ . .+|..+.++..+|.+
T Consensus 193 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al--~~~~~~~~~~~~~~~~~la~~ 270 (378)
T 3q15_A 193 DDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAA--KVSREKVPDLLPKVLFGLSWT 270 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH--HHHHHHCGGGHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH--HHHHhhCChhHHHHHHHHHHH
Confidence 888888888888888887532 234578888888888888888988888888 7 778777777777776
Q ss_pred HhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHH
Q 013299 241 CGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSIL 320 (446)
Q Consensus 241 ~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~ 320 (446)
+.. .|++++|+.+++++++..+..........+..++..+...+. ...+.+|+..+++ . ...|....++
T Consensus 271 ~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~--------~~~~~~al~~~~~-~-~~~~~~~~~~ 339 (378)
T 3q15_A 271 LCK-AGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVD--------ERKIHDLLSYFEK-K-NLHAYIEACA 339 (378)
T ss_dssp HHH-TTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCC--------HHHHHHHHHHHHH-T-TCHHHHHHHH
T ss_pred HHH-CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCc--------HHHHHHHHHHHHh-C-CChhHHHHHH
Confidence 554 688888888888888865432211122233444444433321 0235666666665 2 3445555666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 013299 321 YRLSLEYAEQRKLNAAHYYAKMLLKLE 347 (446)
Q Consensus 321 ~~lg~~~~~~~~~~~A~~~~~~al~l~ 347 (446)
..+|.++...|++++|+.+|++++.+.
T Consensus 340 ~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 340 RSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 777777777777777777777776654
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.79 E-value=9.6e-20 Score=170.86 Aligned_cols=219 Identities=12% Similarity=-0.015 Sum_probs=180.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHH-------HHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHH
Q 013299 165 DHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHIL-------ALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIA 237 (446)
Q Consensus 165 ~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~l-------g~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~ 237 (446)
+..|..+ ..+++.+|.+.|.+++.++|+.+++|..+ +.++...++..+++..+++++ .+.|+...+++.+
T Consensus 11 ~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l--~l~p~~l~a~~~~ 87 (282)
T 4f3v_A 11 FESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSV--QISMSTLNARIAI 87 (282)
T ss_dssp HHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTT--TCCGGGGCCEEEC
T ss_pred HHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHh--cCChhhhhhhhcc
Confidence 3445555 68999999999999999999999999999 899999999999999999999 9999987765542
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCH
Q 013299 238 SKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDL 317 (446)
Q Consensus 238 ~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~ 317 (446)
++++ |+. . .+-. ....++..++.++.. .|++++|.+.|+.++ ..+|++.
T Consensus 88 ~g~y----~~~-----------~-~~v~---~r~dl~LayA~~L~~-----------~g~y~eA~~~l~~~~-~~~p~~~ 136 (282)
T 4f3v_A 88 GGLY----GDI-----------T-YPVT---SPLAITMGFAACEAA-----------QGNYADAMEALEAAP-VAGSEHL 136 (282)
T ss_dssp CTTT----CCC-----------E-EECS---SHHHHHHHHHHHHHH-----------HTCHHHHHHHHTSSC-CTTCHHH
T ss_pred CCcc----ccc-----------c-cccC---CHhHHHHHHHHHHHH-----------CCCHHHHHHHHHHHH-hcCCchH
Confidence 2221 000 0 1110 123455666666654 467999999999999 9999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhc-CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhc--CCCC-cHHHHHH
Q 013299 318 SILYRLSLEYAEQRKLNAAHYYAKMLLKLE-GGSNLKGWLLMARILSAQKRYEDAETILNAALDQT--GKWE-QGELLRT 393 (446)
Q Consensus 318 ~a~~~lg~~~~~~~~~~~A~~~~~~al~l~-P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--p~~~-~~~~~~~ 393 (446)
++|.+|.++.+.+++++|+.+|++++... |.....+++++|.++..+|++++|+.+|++++... | . ..+++++
T Consensus 137 -~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P--~~~~da~~~ 213 (282)
T 4f3v_A 137 -VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGE--ACARAIAWY 213 (282)
T ss_dssp -HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTT--TTHHHHHHH
T ss_pred -HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCc--cccHHHHHH
Confidence 99999999999999999999999887753 22112589999999999999999999999999654 6 4 7789999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHhh
Q 013299 394 KAKVQLVQGQLKGAVETYTHLLAALQV 420 (446)
Q Consensus 394 ~a~~~~~~g~~~eA~~~~~~~l~l~~~ 420 (446)
+|.++..+|+.++|...|+++++..|+
T Consensus 214 ~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 214 LAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 999999999999999999999999876
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.77 E-value=6e-18 Score=140.52 Aligned_cols=114 Identities=12% Similarity=0.090 Sum_probs=107.2
Q ss_pred hhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 013299 270 ESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG 349 (446)
Q Consensus 270 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~ 349 (446)
.+.++..+|..+... |++++|+..|++++ +++|+++.+++++|.++..+|++++|+..|+++++++|+
T Consensus 12 ~a~~~~~~G~~~~~~-----------g~~~~A~~~~~~al-~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 79 (126)
T 4gco_A 12 LAQEEKNKGNEYFKK-----------GDYPTAMRHYNEAV-KRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK 79 (126)
T ss_dssp HHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-HhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh
Confidence 467888999998765 57899999999999 999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHH
Q 013299 350 SNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQ 398 (446)
Q Consensus 350 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~ 398 (446)
+ ..+|.++|.++..+|++++|+..|+++++++| ++.+++..++.++
T Consensus 80 ~-~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P--~~~~a~~~l~~~l 125 (126)
T 4gco_A 80 F-IKGYIRKAACLVAMREWSKAQRAYEDALQVDP--SNEEAREGVRNCL 125 (126)
T ss_dssp C-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHC
T ss_pred h-hHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCc--CCHHHHHHHHHhc
Confidence 9 59999999999999999999999999999999 8999999888764
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.77 E-value=4.8e-16 Score=169.88 Aligned_cols=307 Identities=11% Similarity=0.035 Sum_probs=223.7
Q ss_pred HHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHH------------HHHHHH--------HhHHHHH
Q 013299 15 LKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQET------------LNRAVE--------LLPELWK 74 (446)
Q Consensus 15 ~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~------------~~~a~~--------~l~~~~~ 74 (446)
-..++|...|.+.+|++.+++++-. |..+..+..+.-. ...... ..|.++.
T Consensus 990 ~~vKaf~~aglp~EaieLLEKivl~---------~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai 1060 (1630)
T 1xi4_A 990 VTVKAFMTADLPNELIELLEKIVLD---------NSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAI 1060 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHcC---------CCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHH
Confidence 3566777999999999999998832 2111100011100 111122 2478999
Q ss_pred HhCChHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHh
Q 013299 75 LADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVAL 154 (446)
Q Consensus 75 ~~g~~~eA~~~y~~al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~~l 154 (446)
+.|.++||+.+|+++-.. + . ... .++ ...+++++|+..+ +
T Consensus 1061 ~lglyEEAf~IYkKa~~~----~-~-------A~~-VLi-------------------e~i~nldrAiE~A-----e--- 1100 (1630)
T 1xi4_A 1061 SNELFEEAFAIFRKFDVN----T-S-------AVQ-VLI-------------------EHIGNLDRAYEFA-----E--- 1100 (1630)
T ss_pred hCCCHHHHHHHHHHcCCH----H-H-------HHH-HHH-------------------HHHhhHHHHHHHH-----H---
Confidence 999999999999998432 1 1 011 111 1235688888753 2
Q ss_pred hcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCC-hHH
Q 013299 155 KRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKC-LPA 233 (446)
Q Consensus 155 ~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~-~~a 233 (446)
..+++.+|+.+|.++...|++++|+.+|.++ ++++.|..+|.++.+.|++++|++.|..|+ +..|+. ...
T Consensus 1101 --rvn~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mAr--k~~~e~~Idt 1171 (1630)
T 1xi4_A 1101 --RCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMAR--KKARESYVET 1171 (1630)
T ss_pred --hcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHH--hhcccccccH
Confidence 2578999999999999999999999999886 889999999999999999999999999999 566542 222
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhC
Q 013299 234 LLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTN 313 (446)
Q Consensus 234 ~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~ 313 (446)
. ++ .++.+.+++++ ++.| +. .++ ...+..+|..+... |++++|+.+|.++
T Consensus 1172 ~--La-faYAKl~rlee-le~f---I~--~~n-----~ad~~~iGd~le~e-----------g~YeeA~~~Y~kA----- 1221 (1630)
T 1xi4_A 1172 E--LI-FALAKTNRLAE-LEEF---IN--GPN-----NAHIQQVGDRCYDE-----------KMYDAAKLLYNNV----- 1221 (1630)
T ss_pred H--HH-HHHHhhcCHHH-HHHH---Hh--CCC-----HHHHHHHHHHHHhc-----------CCHHHHHHHHHhh-----
Confidence 2 33 34555677764 4333 32 222 34566788888664 5789999999875
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHH
Q 013299 314 MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRT 393 (446)
Q Consensus 314 P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~ 393 (446)
..|..+|.++..+|++++|++.+++| .+ ..+|...+.+....|+|..|..+... +..+| +-+..
T Consensus 1222 ----~ny~rLA~tLvkLge~q~AIEaarKA-----~n-~~aWkev~~acve~~Ef~LA~~cgl~-Iiv~~-----deLee 1285 (1630)
T 1xi4_A 1222 ----SNFGRLASTLVHLGEYQAAVDGARKA-----NS-TRTWKEVCFACVDGKEFRLAQMCGLH-IVVHA-----DELEE 1285 (1630)
T ss_pred ----hHHHHHHHHHHHhCCHHHHHHHHHHh-----CC-HHHHHHHHHHHhhhhHHHHHHHHHHh-hhcCH-----HHHHH
Confidence 36889999999999999999999999 44 38899899998899999999887764 54555 44447
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhc
Q 013299 394 KAKVQLVQGQLKGAVETYTHLLAALQVQTKTF 425 (446)
Q Consensus 394 ~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~~ 425 (446)
++..+...|.+++|+..|+++|.+.+.+...|
T Consensus 1286 li~yYe~~G~feEAI~LlE~aL~LeraH~gmf 1317 (1630)
T 1xi4_A 1286 LINYYQDRGYFEELITMLEAALGLERAHMGMF 1317 (1630)
T ss_pred HHHHHHHcCCHHHHHHHHHHHhccChhHhHHH
Confidence 78888899999999999999988877665555
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=6.1e-18 Score=176.23 Aligned_cols=164 Identities=14% Similarity=0.060 Sum_probs=86.2
Q ss_pred cCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHH
Q 013299 174 AGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGAT 253 (446)
Q Consensus 174 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~ 253 (446)
.|++++|++.|+++++.+|+++.+|+.+|.++...|++++|+..|++++ .++|+++.++..+|.++.. .|++++|+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al--~~~p~~~~~~~~lg~~~~~-~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGL--ALHPGHPEAVARLGRVRWT-QQRHAEAAV 78 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHH--TTSTTCHHHHHHHHHHHHH-TTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHH-CCCHHHHHH
Confidence 4788999999999999999999999999999999999999999999999 8999988877766655433 345544444
Q ss_pred HHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---
Q 013299 254 FASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQ--- 330 (446)
Q Consensus 254 ~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~--- 330 (446)
+++++++..|.+ ..+++.+|.++... |++++|+..|++++ +++|+++.+++++|.++..+
T Consensus 79 ~~~~al~~~p~~-----~~~~~~la~~~~~~-----------g~~~~A~~~~~~al-~~~p~~~~~~~~l~~~~~~~~~~ 141 (568)
T 2vsy_A 79 LLQQASDAAPEH-----PGIALWLGHALEDA-----------GQAEAAAAAYTRAH-QLLPEEPYITAQLLNWRRRLCDW 141 (568)
T ss_dssp HHHHHHHHCTTC-----HHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhcCCCC-----HHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHhhcc
Confidence 444444432221 23444444444332 23445555555555 45555555555555555554
Q ss_pred CCHHHHHHHHHHHHhhcCCCCHHHHHHH
Q 013299 331 RKLNAAHYYAKMLLKLEGGSNLKGWLLM 358 (446)
Q Consensus 331 ~~~~~A~~~~~~al~l~P~~~~~~~~~l 358 (446)
|++++|+..++++++.+|++. ..+..+
T Consensus 142 g~~~~A~~~~~~al~~~p~~~-~~~~~l 168 (568)
T 2vsy_A 142 RALDVLSAQVRAAVAQGVGAV-EPFAFL 168 (568)
T ss_dssp TTHHHHHHHHHHHHHHTCCCS-CHHHHT
T ss_pred ccHHHHHHHHHHHHhcCCccc-ChHHHh
Confidence 555555555555555555442 444433
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=8.9e-18 Score=143.56 Aligned_cols=117 Identities=15% Similarity=0.073 Sum_probs=112.1
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhc
Q 013299 303 QALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQT 382 (446)
Q Consensus 303 ~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 382 (446)
..|++++ .++|+++.+++.+|.++...|++++|+..|++++.++|++ ..+|+++|.++..+|++++|+.+|++++.++
T Consensus 8 ~~~~~al-~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 8 GTIAMLN-EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYD-SRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp CSHHHHT-TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hhHHHHH-cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCccc-HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 4688999 9999999999999999999999999999999999999999 5999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhh
Q 013299 383 GKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTK 423 (446)
Q Consensus 383 p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~ 423 (446)
| +++.+++++|.++..+|++++|++.|++++++.|++++
T Consensus 86 p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 124 (148)
T 2vgx_A 86 I--XEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPE 124 (148)
T ss_dssp T--TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGG
T ss_pred C--CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCc
Confidence 9 89999999999999999999999999999999986543
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.75 E-value=5.8e-17 Score=147.06 Aligned_cols=190 Identities=16% Similarity=0.075 Sum_probs=147.4
Q ss_pred HHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCC----CHHHHHH
Q 013299 178 SSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPD----LAEEGAT 253 (446)
Q Consensus 178 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~----~~~eA~~ 253 (446)
.+|++.|+++.+. +++.+++.||.++...+++++|+..|++++ +++++.+++.+|.++.. + ++++|+.
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~----~~g~~~a~~~lg~~y~~--~g~~~~~~~A~~ 74 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAA----AQGDGDALALLAQLKIR--NPQQADYPQARQ 74 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHH----HTTCHHHHHHHHHHTTS--STTSCCHHHHHH
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHc--CCCCCCHHHHHH
Confidence 3566777777764 678888888888888888888888888888 34677888877766544 4 7888888
Q ss_pred HHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHH--
Q 013299 254 FASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNM--RDLSILYRLSLEYAE-- 329 (446)
Q Consensus 254 ~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P--~~~~a~~~lg~~~~~-- 329 (446)
+|+++++. .+ +.+++.+|.+|..-.. ..+++++|+.+|++++ +..| +++.++++||.+|..
T Consensus 75 ~~~~A~~~--g~-----~~a~~~Lg~~y~~g~g-------~~~d~~~A~~~~~~A~-~~~~~~~~~~a~~~Lg~~y~~g~ 139 (212)
T 3rjv_A 75 LAEKAVEA--GS-----KSGEIVLARVLVNRQA-------GATDVAHAITLLQDAA-RDSESDAAVDAQMLLGLIYASGV 139 (212)
T ss_dssp HHHHHHHT--TC-----HHHHHHHHHHHTCGGG-------SSCCHHHHHHHHHHHT-SSTTSHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHC--CC-----HHHHHHHHHHHHcCCC-------CccCHHHHHHHHHHHH-HcCCCcchHHHHHHHHHHHHcCC
Confidence 88888762 22 5678888887754110 0246899999999999 9988 469999999999999
Q ss_pred --cCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHc-c-----CHHHHHHHHHHHHhhcCCCCcHHHHHHHHH
Q 013299 330 --QRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQ-K-----RYEDAETILNAALDQTGKWEQGELLRTKAK 396 (446)
Q Consensus 330 --~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~-g-----~~~eA~~~~~~al~~~p~~~~~~~~~~~a~ 396 (446)
.+++++|+.+|++|+++ |+++ .++++||.++... | ++++|+.+|++|++..+ ..+...++.
T Consensus 140 g~~~d~~~A~~~~~~A~~~-~~~~-~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~----~~A~~~l~~ 208 (212)
T 3rjv_A 140 HGPEDDVKASEYFKGSSSL-SRTG-YAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF----DTGCEEFDR 208 (212)
T ss_dssp SSSCCHHHHHHHHHHHHHT-SCTT-HHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC----HHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHc-CCCH-HHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC----HHHHHHHHH
Confidence 88999999999999998 6775 8999999999865 3 89999999999998744 344444443
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.4e-19 Score=176.38 Aligned_cols=159 Identities=15% Similarity=0.017 Sum_probs=131.4
Q ss_pred CCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCC---------
Q 013299 246 DLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRD--------- 316 (446)
Q Consensus 246 ~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~--------- 316 (446)
+.+++|+..++++++..+ ..+.++..+|.++... +++++|+..|++++ +++|++
T Consensus 127 ~~~~~A~~~~~~a~~~~p-----~~a~~~~~~g~~~~~~-----------g~~~~A~~~y~~Al-~~~p~~~~~~~~~~~ 189 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKL-----EQSTIVKERGTVYFKE-----------GKYKQALLQYKKIV-SWLEYESSFSNEEAQ 189 (336)
T ss_dssp EEEECCCCGGGCCHHHHH-----HHHHHHHHHHHHHHHH-----------TCHHHHHHHHHHHH-HHTTTCCCCCSHHHH
T ss_pred eecccccchhcCCHHHHH-----HHHHHHHHHHHHHHHC-----------CCHHHHHHHHHHHH-HHhhccccCChHHHH
Confidence 344555555555554321 1245667777776543 45777777777777 777777
Q ss_pred ------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHH
Q 013299 317 ------LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGEL 390 (446)
Q Consensus 317 ------~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 390 (446)
+.+++++|.++..+|++++|+..|+++++++|++ ..+|+++|.++..+|++++|+.+|+++++++| ++..+
T Consensus 190 ~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P--~~~~a 266 (336)
T 1p5q_A 190 KAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNN-EKGLSRRGEAHLAVNDFELARADFQKVLQLYP--NNKAA 266 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS--SCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC--CCHHH
Confidence 6999999999999999999999999999999999 59999999999999999999999999999999 89999
Q ss_pred HHHHHHHHHHhCCHHHH-HHHHHHHHHHHhhhhhh
Q 013299 391 LRTKAKVQLVQGQLKGA-VETYTHLLAALQVQTKT 424 (446)
Q Consensus 391 ~~~~a~~~~~~g~~~eA-~~~~~~~l~l~~~~~~~ 424 (446)
+..++.++..+|++++| ...|+++++.....++.
T Consensus 267 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 301 (336)
T 1p5q_A 267 KTQLAVCQQRIRRQLAREKKLYANMFERLAEEENK 301 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 99999999999999999 66889998877665544
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.5e-17 Score=157.88 Aligned_cols=199 Identities=13% Similarity=-0.018 Sum_probs=165.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHH
Q 013299 158 EWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIA 237 (446)
Q Consensus 158 p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~ 237 (446)
|.++.++..+|.++...|++++|+..|++++..+|+++.+|+++|.++...|++++|+..|++++ .++|+++.+++.+
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al--~~~p~~~~~~~~l 78 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRAL--ELDGQSVKAHFFL 78 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT--TSCTTCHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HhCCCCHHHHHHH
Confidence 67888999999999999999999999999999999999999999999999999999999999999 9999999999988
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCH
Q 013299 238 SKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDL 317 (446)
Q Consensus 238 ~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~ 317 (446)
|.++. ..|++++|+..|+++++..|.+...+...++..+ ...++........ ...|.++
T Consensus 79 g~~~~-~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~-~~~~~~~ 137 (281)
T 2c2l_A 79 GQCQL-EMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL-------------------RIAKKKRWNSIEE-RRIHQES 137 (281)
T ss_dssp HHHHH-HTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH-------------------HHHHHHHHHHHHH-TCCCCCC
T ss_pred HHHHH-HcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH-------------------HHHHHHHHHHHHH-HHHhhhH
Confidence 87755 5799999999999999975543221111222111 1234444555666 7889999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHc-cCHHHHHHHHHHHHhhc
Q 013299 318 SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQ-KRYEDAETILNAALDQT 382 (446)
Q Consensus 318 ~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~-g~~~eA~~~~~~al~~~ 382 (446)
.+...++.++ .|++++|+..++++++++|++ ......++.++... +++++|...|.++.+..
T Consensus 138 ~i~~~l~~l~--~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~ 200 (281)
T 2c2l_A 138 ELHSYLTRLI--AAERERELEECQRNHEGHEDD-GHIRAQQACIEAKHDKYMADMDELFSQVDEKR 200 (281)
T ss_dssp HHHHHHHHHH--HHHHHHHHTTTSGGGTTTSCH-HHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTT
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHhhhccccch-hhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 9999888875 699999999999999999998 47777888777776 77999999999887643
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=2.5e-16 Score=152.26 Aligned_cols=239 Identities=9% Similarity=0.000 Sum_probs=191.8
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHC-C-ChHHH
Q 013299 138 IEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAG-DLSSLATQIEELLPGIINRKERYHILALCYYGA-G-EDLVA 214 (446)
Q Consensus 138 ~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-g-~~~eA 214 (446)
.++|+.++ +.++..+|++..+|+..+.++...| .++++++.+++++..+|++..+|+..+.++... + +++++
T Consensus 70 se~AL~lt-----~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 70 SERALELT-----EIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp SHHHHHHH-----HHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHH
T ss_pred CHHHHHHH-----HHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHH
Confidence 45677664 6788999999999999999999999 599999999999999999999999999999998 8 99999
Q ss_pred HHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHH--------HHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhh
Q 013299 215 LNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAE--------EGATFASRALECLGDGCDQMESTANCLLGISLSAQSK 286 (446)
Q Consensus 215 ~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~--------eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~ 286 (446)
+..+.+++ ..+|+|..++...+.+. ...+.++ +++++++++|+..+.+ ..+|.+.|.++...+.
T Consensus 145 L~~~~k~L--~~dpkNy~AW~~R~wvl-~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N-----~SAW~~R~~lL~~l~~ 216 (349)
T 3q7a_A 145 IEYIHGSL--LPDPKNYHTWAYLHWLY-SHFSTLGRISEAQWGSELDWCNEMLRVDGRN-----NSAWGWRWYLRVSRPG 216 (349)
T ss_dssp HHHHHHHT--SSCTTCHHHHHHHHHHH-HHHHHTTCCCHHHHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHTTSTT
T ss_pred HHHHHHHH--HhCCCCHHHHHHHHHHH-HHhccccccchhhHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHhccc
Confidence 99999999 99999999998776554 3344555 9999999999965544 5799999998876543
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHhh
Q 013299 287 VAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKL--------------------NAAHYYAKMLLKL 346 (446)
Q Consensus 287 ~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~--------------------~~A~~~~~~al~l 346 (446)
... ....++++++++++++ .++|+|..+|+++..++...|+- .+-...+...+..
T Consensus 217 ~~~----~~~~~~eELe~~~~aI-~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (349)
T 3q7a_A 217 AET----SSRSLQDELIYILKSI-HLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSD 291 (349)
T ss_dssp CCC----CHHHHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-
T ss_pred ccc----chHHHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhc
Confidence 100 1234789999999999 99999999999999998887753 3334444444433
Q ss_pred c------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH-hhcCCCCcHHHHHHHHHH
Q 013299 347 E------GGSNLKGWLLMARILSAQKRYEDAETILNAAL-DQTGKWEQGELLRTKAKV 397 (446)
Q Consensus 347 ~------P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al-~~~p~~~~~~~~~~~a~~ 397 (446)
. +.+ ..++..++.++..+|+.++|+.+|+... +.+| -....|..++..
T Consensus 292 ~~~~~~~~~s-~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dp--ir~~yw~~~~~~ 346 (349)
T 3q7a_A 292 PLPEDTPLPV-PLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQ--MRAGYWEFRRRE 346 (349)
T ss_dssp CCCSSCCSCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCG--GGHHHHHHHHHH
T ss_pred ccccccCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhCh--HHHHHHHHHHHh
Confidence 3 456 4899999999999999999999999987 6688 666777666543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.74 E-value=9.8e-16 Score=167.46 Aligned_cols=302 Identities=12% Similarity=0.030 Sum_probs=219.2
Q ss_pred HHHHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHH
Q 013299 10 LEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRA 89 (446)
Q Consensus 10 ~~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~a 89 (446)
.++|++.|+++...|+++||+..|.++ ++| .++..++.++.+.|++++|+.+|..+
T Consensus 1105 p~vWsqLAKAql~~G~~kEAIdsYiKA----------dD~--------------say~eVa~~~~~lGkyEEAIeyL~mA 1160 (1630)
T 1xi4_A 1105 PAVWSQLAKAQLQKGMVKEAIDSYIKA----------DDP--------------SSYMEVVQAANTSGNWEELVKYLQMA 1160 (1630)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhc----------CCh--------------HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 578899999999999999999998663 122 24556778899999999999999998
Q ss_pred hCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHH
Q 013299 90 LLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSF 169 (446)
Q Consensus 90 l~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~ 169 (446)
.+. +++.. +...++.. |...+++++ +..+ + ..| +...+..+|.
T Consensus 1161 rk~----~~e~~--Idt~Lafa--------------------YAKl~rlee-le~f--------I-~~~-n~ad~~~iGd 1203 (1630)
T 1xi4_A 1161 RKK----ARESY--VETELIFA--------------------LAKTNRLAE-LEEF--------I-NGP-NNAHIQQVGD 1203 (1630)
T ss_pred Hhh----ccccc--ccHHHHHH--------------------HHhhcCHHH-HHHH--------H-hCC-CHHHHHHHHH
Confidence 887 21110 01112222 223355553 3322 1 224 4456668999
Q ss_pred HHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHH
Q 013299 170 AFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAE 249 (446)
Q Consensus 170 ~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~ 249 (446)
.+...|++++|+.+|.++ ..|..+|.+|...|++++|+..+++|. ++.+|...+..|.. .+++.
T Consensus 1204 ~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~-------n~~aWkev~~acve-~~Ef~ 1267 (1630)
T 1xi4_A 1204 RCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVCFACVD-GKEFR 1267 (1630)
T ss_pred HHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhC-------CHHHHHHHHHHHhh-hhHHH
Confidence 999999999999999985 578899999999999999999999976 23566666666655 56777
Q ss_pred HHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 013299 250 EGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAE 329 (446)
Q Consensus 250 eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~ 329 (446)
.|..+... +... +.-+..++..|. +.|.+++|+..+++++ .++|.+...+..||.++.+
T Consensus 1268 LA~~cgl~-Iiv~--------~deLeeli~yYe-----------~~G~feEAI~LlE~aL-~LeraH~gmftELaiLyaK 1326 (1630)
T 1xi4_A 1268 LAQMCGLH-IVVH--------ADELEELINYYQ-----------DRGYFEELITMLEAAL-GLERAHMGMFTELAILYSK 1326 (1630)
T ss_pred HHHHHHHh-hhcC--------HHHHHHHHHHHH-----------HcCCHHHHHHHHHHHh-ccChhHhHHHHHHHHHHHh
Confidence 77777653 2211 223334555553 4577999999999999 9999999999889888876
Q ss_pred --cCCHHHHHHHHHHHHhhcC-----CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh------------cCCCCcHHH
Q 013299 330 --QRKLNAAHYYAKMLLKLEG-----GSNLKGWLLMARILSAQKRYEDAETILNAALDQ------------TGKWEQGEL 390 (446)
Q Consensus 330 --~~~~~~A~~~~~~al~l~P-----~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~------------~p~~~~~~~ 390 (446)
-+++-++++.|...+.+.| ++ ...|..+..+|.+.|+|+.|+..+-..... .+ .++++
T Consensus 1327 y~peklmEhlk~f~~rini~k~~r~~e~-~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv--~n~el 1403 (1630)
T 1xi4_A 1327 FKPQKMREHLELFWSRVNIPKVLRAAEQ-AHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKV--ANVEL 1403 (1630)
T ss_pred CCHHHHHHHHHHHHHhcccchHhHHHHH-HHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhccc--ccHHH
Confidence 4689999999999988887 66 488999999999999999999544333222 34 68899
Q ss_pred HHHHHHHHHHhC---------------CHHHHHHHHH
Q 013299 391 LRTKAKVQLVQG---------------QLKGAVETYT 412 (446)
Q Consensus 391 ~~~~a~~~~~~g---------------~~~eA~~~~~ 412 (446)
++.-...+...+ +++.++..++
T Consensus 1404 yykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1404 YYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred HHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence 988888888666 6666666655
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-17 Score=143.31 Aligned_cols=103 Identities=8% Similarity=0.025 Sum_probs=87.7
Q ss_pred hHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Q 013299 271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS 350 (446)
Q Consensus 271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~ 350 (446)
..+++.+|.++... |++++|+..|++++ .++|+++.+|+++|.++..+|++++|+..|+++++++|++
T Consensus 36 ~~~~~~lg~~~~~~-----------g~~~eA~~~~~~al-~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~ 103 (151)
T 3gyz_A 36 MDDIYSYAYDFYNK-----------GRIEEAEVFFRFLC-IYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND 103 (151)
T ss_dssp HHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC
Confidence 45566666666543 46788999999999 8999999999999999999999999999999999999998
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcH
Q 013299 351 NLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQG 388 (446)
Q Consensus 351 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 388 (446)
+ .+|+++|.++..+|++++|+.+|++++++.| +..
T Consensus 104 ~-~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~--~~~ 138 (151)
T 3gyz_A 104 Y-TPVFHTGQCQLRLKAPLKAKECFELVIQHSN--DEK 138 (151)
T ss_dssp C-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC--CHH
T ss_pred c-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CHH
Confidence 5 9999999999999999999999999999988 543
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.4e-17 Score=140.85 Aligned_cols=118 Identities=18% Similarity=0.115 Sum_probs=109.5
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhc
Q 013299 303 QALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQT 382 (446)
Q Consensus 303 ~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 382 (446)
..|++++ .++|+++.+++.+|.++...|++++|+..|++++.++|++ ..+|..+|.++..+|++++|+.+|++++.++
T Consensus 5 ~~l~~al-~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 82 (142)
T 2xcb_A 5 GTLAMLR-GLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYD-ARYFLGLGACRQSLGLYEQALQSYSYGALMD 82 (142)
T ss_dssp ----CCT-TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhHHHHH-cCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCcc-HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 4788899 9999999999999999999999999999999999999999 5999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhh
Q 013299 383 GKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKT 424 (446)
Q Consensus 383 p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~ 424 (446)
| +++.+++++|.++..+|++++|+..|++++++.|++++.
T Consensus 83 p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 122 (142)
T 2xcb_A 83 I--NEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAH 122 (142)
T ss_dssp T--TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGG
T ss_pred C--CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcch
Confidence 9 899999999999999999999999999999999865443
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=5e-17 Score=169.31 Aligned_cols=156 Identities=10% Similarity=-0.099 Sum_probs=124.7
Q ss_pred CCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 013299 246 DLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSL 325 (446)
Q Consensus 246 ~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~ 325 (446)
|++++|+..++++++..|.+ ..+++.+|.++... |++++|+..|++++ +++|+++.+++++|.
T Consensus 3 g~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~~~-----------g~~~~A~~~~~~al-~~~p~~~~~~~~lg~ 65 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQD-----FVAWLMLADAELGM-----------GDTTAGEMAVQRGL-ALHPGHPEAVARLGR 65 (568)
T ss_dssp ------------------CC-----HHHHHHHHHHHHHH-----------TCHHHHHHHHHHHH-TTSTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-HhCCCCHHHHHHHHH
Confidence 55667777777777743332 46777788777554 56899999999999 999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHh---C
Q 013299 326 EYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQ---G 402 (446)
Q Consensus 326 ~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~---g 402 (446)
++..+|++++|+..|+++++++|++ ..+|.++|.++..+|++++|+.+++++++.+| ++..+++++|.++..+ |
T Consensus 66 ~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~~g 142 (568)
T 2vsy_A 66 VRWTQQRHAEAAVLLQQASDAAPEH-PGIALWLGHALEDAGQAEAAAAAYTRAHQLLP--EEPYITAQLLNWRRRLCDWR 142 (568)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999999 59999999999999999999999999999999 8899999999999999 9
Q ss_pred CHHHHHHHHHHHHHHHhhh
Q 013299 403 QLKGAVETYTHLLAALQVQ 421 (446)
Q Consensus 403 ~~~eA~~~~~~~l~l~~~~ 421 (446)
++++|++.|+++++..|..
T Consensus 143 ~~~~A~~~~~~al~~~p~~ 161 (568)
T 2vsy_A 143 ALDVLSAQVRAAVAQGVGA 161 (568)
T ss_dssp THHHHHHHHHHHHHHTCCC
T ss_pred cHHHHHHHHHHHHhcCCcc
Confidence 9999999999999998764
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.73 E-value=6.1e-17 Score=155.40 Aligned_cols=228 Identities=13% Similarity=0.040 Sum_probs=165.5
Q ss_pred CCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHH
Q 013299 135 RNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSI-AGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLV 213 (446)
Q Consensus 135 ~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~-~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~e 213 (446)
.|++++|..++. .+.+..+.. +.. .+++++|+..|+++ |.+|...|++++
T Consensus 4 ~~~~~eA~~~~~-----~a~k~~~~~----------~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~ 54 (307)
T 2ifu_A 4 AQKISEAHEHIA-----KAEKYLKTS----------FMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQ 54 (307)
T ss_dssp HHHHHHHHHHHH-----HHHHHHCCC----------SSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHH
T ss_pred cchHHHHHHHHH-----HHHHHcccc----------ccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHH
Confidence 457788887653 233333321 112 57888888888765 678888899999
Q ss_pred HHHHHHHHhcCCCCCCC------hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC-cchhhhHHHHHhhchhHhhhh
Q 013299 214 ALNLLRTLLSGSEDPKC------LPALLIASKICGEYPDLAEEGATFASRALECLGDG-CDQMESTANCLLGISLSAQSK 286 (446)
Q Consensus 214 A~~~~~~al~~~~~P~~------~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~-~~~~~~~a~~~lg~~~~~~~~ 286 (446)
|+..|++++ .+.|.. ..++..+|. ++...|++++|+.+|+++++..... +......++..+|.+|..
T Consensus 55 A~~~~~~al--~~~~~~~~~~~~a~~~~~lg~-~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~--- 128 (307)
T 2ifu_A 55 AKDAYLQEA--EAHANNRSLFHAAKAFEQAGM-MLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP--- 128 (307)
T ss_dssp HHHHHHHHH--HHHHHTTCHHHHHHHHHHHHH-HHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHH--HHHHHcCCHHHHHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc---
Confidence 999999988 665432 234444444 4555788999999999998864321 122346778889988854
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC-----HHHH
Q 013299 287 VAITDFDRATRQAKALQALVSAARSTNMRD------LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN-----LKGW 355 (446)
Q Consensus 287 ~~~~~~~~~~~~~eAl~~~~~al~~~~P~~------~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~-----~~~~ 355 (446)
|++++|+.+|++++ ++.|.+ ..++.++|.++..+|++++|+.+|++++.+.|++. ..++
T Consensus 129 ---------g~~~~A~~~~~~Al-~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 198 (307)
T 2ifu_A 129 ---------LDLSKAVHLYQQAA-AVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKC 198 (307)
T ss_dssp ---------TCHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ---------CCHHHHHHHHHHHH-HHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHH
Confidence 46899999999999 998765 67899999999999999999999999999987652 2478
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhhcCCCCc---HHHHHHHHHHHHHhCCHHHHHH
Q 013299 356 LLMARILSAQKRYEDAETILNAALDQTGKWEQ---GELLRTKAKVQLVQGQLKGAVE 409 (446)
Q Consensus 356 ~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~---~~~~~~~a~~~~~~g~~~eA~~ 409 (446)
..+|.++..+|++++|+.+|++++ .+|.... ...+..++..+ ..|+.+....
T Consensus 199 ~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 199 IAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 889999999999999999999999 9983211 12233444444 5677654444
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.73 E-value=3.5e-18 Score=169.06 Aligned_cols=302 Identities=11% Similarity=0.007 Sum_probs=160.7
Q ss_pred HHHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHh
Q 013299 11 EAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRAL 90 (446)
Q Consensus 11 ~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~al 90 (446)
++|..+|.++.+.|++++|++.|.++- +|. ++...+..+...|++++|+.+++.++
T Consensus 33 ~vWs~La~A~l~~g~~~eAIdsfika~----------D~~--------------~y~~V~~~ae~~g~~EeAi~yl~~ar 88 (449)
T 1b89_A 33 AVWSQLAKAQLQKGMVKEAIDSYIKAD----------DPS--------------SYMEVVQAANTSGNWEELVKYLQMAR 88 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcCC----------CHH--------------HHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 578889999999999999999986531 222 23334456777899999999888888
Q ss_pred CCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Q 013299 91 LPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFA 170 (446)
Q Consensus 91 ~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~ 170 (446)
+. .++. .+. ..+...|...|+++++...+ ..| +..+|..+|..
T Consensus 89 k~----~~~~--~i~--------------------~~Li~~Y~Klg~l~e~e~f~----------~~p-n~~a~~~IGd~ 131 (449)
T 1b89_A 89 KK----ARES--YVE--------------------TELIFALAKTNRLAELEEFI----------NGP-NNAHIQQVGDR 131 (449)
T ss_dssp ----------------------------------------------CHHHHTTTT----------TCC------------
T ss_pred Hh----Cccc--hhH--------------------HHHHHHHHHhCCHHHHHHHH----------cCC-cHHHHHHHHHH
Confidence 75 1110 011 12223455677888876542 224 44699999999
Q ss_pred HHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHH
Q 013299 171 FSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEE 250 (446)
Q Consensus 171 l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~e 250 (446)
+...|++++|..+|.++ ..|..||.++.++|+|++|+..|+++. ++..|......|.. .|+++.
T Consensus 132 ~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA~-------~~~~Wk~v~~aCv~-~~ef~l 195 (449)
T 1b89_A 132 CYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVCFACVD-GKEFRL 195 (449)
T ss_dssp -----CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHHT-------CHHHHHHHHHHHHH-TTCHHH
T ss_pred HHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHcC-------CchhHHHHHHHHHH-cCcHHH
Confidence 99999999999999977 478899999999999999999999974 46667666667766 688988
Q ss_pred HHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-
Q 013299 251 GATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAE- 329 (446)
Q Consensus 251 A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~- 329 (446)
|..+....+ .++ .-...+..+|. +.|++++|+..+++++ .++|.+..++..||.+|.+
T Consensus 196 A~~~~l~L~----~~a-----d~l~~lv~~Ye-----------k~G~~eEai~lLe~aL-~le~ah~~~ftel~il~~ky 254 (449)
T 1b89_A 196 AQMCGLHIV----VHA-----DELEELINYYQ-----------DRGYFEELITMLEAAL-GLERAHMGMFTELAILYSKF 254 (449)
T ss_dssp HHHTTTTTT----TCH-----HHHHHHHHHHH-----------HTTCHHHHHHHHHHHT-TSTTCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHH----hCH-----hhHHHHHHHHH-----------HCCCHHHHHHHHHHHh-CCcHHHHHHHHHHHHHHHhc
Confidence 876665422 111 11122344443 4578999999999999 9999999999999999886
Q ss_pred -cCCHHHHHHHHHHHHhhcC-----CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh------------cCCCCcHHHH
Q 013299 330 -QRKLNAAHYYAKMLLKLEG-----GSNLKGWLLMARILSAQKRYEDAETILNAALDQ------------TGKWEQGELL 391 (446)
Q Consensus 330 -~~~~~~A~~~~~~al~l~P-----~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~------------~p~~~~~~~~ 391 (446)
.+++.++++.|...+.+.| +++ ..|..+..+|...++|+.|+..+-..... .+ .|.+++
T Consensus 255 ~p~k~~ehl~~~~~~ini~k~~~~~~~~-~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv--~n~ely 331 (449)
T 1b89_A 255 KPQKMREHLELFWSRVNIPKVLRAAEQA-HLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKV--ANVELY 331 (449)
T ss_dssp CHHHHHHHHHHHSTTSCHHHHHHHHHTT-TCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHC--SSTHHH
T ss_pred CHHHHHHHHHHHHHHhcCcHHHHHHHHH-HHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhch--hHHHHH
Confidence 5689999999999999999 774 89999999999999999999877655433 45 678888
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHH
Q 013299 392 RTKAKVQLVQGQLKGAVETYTHLL 415 (446)
Q Consensus 392 ~~~a~~~~~~g~~~eA~~~~~~~l 415 (446)
+.....+. +....++..+..++
T Consensus 332 Ykai~fyl--~~~p~~l~~ll~~l 353 (449)
T 1b89_A 332 YRAIQFYL--EFKPLLLNDLLMVL 353 (449)
T ss_dssp HHHHHHHH--HHCGGGHHHHHHHH
T ss_pred HHHHHHHH--hcCHHHHHHHHHHH
Confidence 87766666 44556666666666
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.3e-17 Score=156.45 Aligned_cols=198 Identities=13% Similarity=0.006 Sum_probs=159.4
Q ss_pred CCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHH-------HHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHH-------
Q 013299 135 RNNIEEAILLLMILLRKVALKRIEWDPSILDHL-------SFAFSIAGDLSSLATQIEELLPGIINRKERYHI------- 200 (446)
Q Consensus 135 ~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~l-------g~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~------- 200 (446)
.++.++|...| ..++..+|+.+++|..+ +.++...+++.+++..+++++.+.|+...++++
T Consensus 19 ~~d~~~A~~~F-----~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~ 93 (282)
T 4f3v_A 19 PMSEARSLDLF-----TEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGD 93 (282)
T ss_dssp TTCHHHHHHHH-----HHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCC
T ss_pred CCCHHHHHHHH-----HHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccc
Confidence 46788998876 66788999999999999 899999999999999999999999888777666
Q ss_pred --------------HHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCc
Q 013299 201 --------------LALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGC 266 (446)
Q Consensus 201 --------------lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~ 266 (446)
++.+|...|+|++|...|+.++ ...|+++ +.+..+.+++. .+++++|+.++++++. .++
T Consensus 94 ~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~--~~~p~~~-~~~~~a~l~~~-~~r~~dA~~~l~~a~~-~~d-- 166 (282)
T 4f3v_A 94 ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAP--VAGSEHL-VAWMKAVVYGA-AERWTDVIDQVKSAGK-WPD-- 166 (282)
T ss_dssp CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSC--CTTCHHH-HHHHHHHHHHH-TTCHHHHHHHHTTGGG-CSC--
T ss_pred cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHH--hcCCchH-HHHHHHHHHHH-cCCHHHHHHHHHHhhc-cCC--
Confidence 8899999999999999999999 8899988 77777766655 6888999999987766 221
Q ss_pred chhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013299 267 DQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTN--MR-DLSILYRLSLEYAEQRKLNAAHYYAKML 343 (446)
Q Consensus 267 ~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~--P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~a 343 (446)
+.....+++++|.++.. +|++++|+.+|++++ ... |. .+++++++|.++..+|+.++|...|+++
T Consensus 167 ~~~~~~a~~~LG~al~~-----------LG~~~eAl~~l~~a~-~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a 234 (282)
T 4f3v_A 167 KFLAGAAGVAHGVAAAN-----------LALFTEAERRLTEAN-DSPAGEACARAIAWYLAMARRSQGNESAAVALLEWL 234 (282)
T ss_dssp HHHHHHHHHHHHHHHHH-----------TTCHHHHHHHHHHHH-TSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHH-----------CCCHHHHHHHHHHHh-cCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 11224578888888754 356788888888887 554 55 6678888888888888888888888888
Q ss_pred HhhcCCCCHHHHHHH
Q 013299 344 LKLEGGSNLKGWLLM 358 (446)
Q Consensus 344 l~l~P~~~~~~~~~l 358 (446)
+..+|+ + .++..|
T Consensus 235 ~a~~P~-~-~~~~aL 247 (282)
T 4f3v_A 235 QTTHPE-P-KVAAAL 247 (282)
T ss_dssp HHHSCC-H-HHHHHH
T ss_pred HhcCCc-H-HHHHHH
Confidence 888887 5 665554
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.6e-17 Score=159.51 Aligned_cols=207 Identities=13% Similarity=0.021 Sum_probs=166.0
Q ss_pred cCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH-CCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHH
Q 013299 174 AGDLSSLATQIEELLPGIINRKERYHILALCYYG-AGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGA 252 (446)
Q Consensus 174 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~ 252 (446)
.|++++|.+.++++.+..+.. ++. .+++++|+..|.++. . ++...|++++|+
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~----------~~~~~~~~~~A~~~~~~a~--~---------------~~~~~g~~~~A~ 56 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTS----------FMKWKPDYDSAASEYAKAA--V---------------AFKNAKQLEQAK 56 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCC----------SSSCSCCHHHHHHHHHHHH--H---------------HHHHTTCHHHHH
T ss_pred cchHHHHHHHHHHHHHHcccc----------ccCCCCCHHHHHHHHHHHH--H---------------HHHHcCCHHHHH
Confidence 467889999998887766542 122 588999999999876 1 233468999999
Q ss_pred HHHHHHHHHcCCC-cchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCC--C----HHHHHHHHH
Q 013299 253 TFASRALECLGDG-CDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMR--D----LSILYRLSL 325 (446)
Q Consensus 253 ~~~~~al~~~~~~-~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~--~----~~a~~~lg~ 325 (446)
.+|.++++..+.. +......++..+|.+|..+ |++++|+.+|++++ ++.+. + ..++.++|.
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~-----------g~~~~A~~~~~~Al-~l~~~~g~~~~~a~~~~~lg~ 124 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDL-----------QRMPEAVQYIEKAS-VMYVENGTPDTAAMALDRAGK 124 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-----------TCGGGGHHHHHHHH-HHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-----------CCHHHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHH
Confidence 9999999965321 1223466888899988664 56899999999999 88543 2 468899999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhcCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCc----HHHHHHHHH
Q 013299 326 EYAEQRKLNAAHYYAKMLLKLEGGSN-----LKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQ----GELLRTKAK 396 (446)
Q Consensus 326 ~~~~~~~~~~A~~~~~~al~l~P~~~-----~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~----~~~~~~~a~ 396 (446)
+|.. |++++|+.+|++|+.+.|... ..++.++|.++..+|+|++|+.+|++++++.|+... ...+..+|.
T Consensus 125 ~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~ 203 (307)
T 2ifu_A 125 LMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVL 203 (307)
T ss_dssp HHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Confidence 9998 999999999999999987541 368999999999999999999999999998762111 347888999
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHhhh
Q 013299 397 VQLVQGQLKGAVETYTHLLAALQVQ 421 (446)
Q Consensus 397 ~~~~~g~~~eA~~~~~~~l~l~~~~ 421 (446)
++..+|++++|+..|++++ +.|..
T Consensus 204 ~~~~~g~~~~A~~~~~~al-~~p~~ 227 (307)
T 2ifu_A 204 VQLHRADYVAAQKCVRESY-SIPGF 227 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHT-TSTTS
T ss_pred HHHHcCCHHHHHHHHHHHh-CCCCC
Confidence 9999999999999999999 87753
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.69 E-value=1.1e-15 Score=125.59 Aligned_cols=134 Identities=22% Similarity=0.232 Sum_probs=125.1
Q ss_pred HHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Q 013299 272 TANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN 351 (446)
Q Consensus 272 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~ 351 (446)
.+++.+|.++... |++++|+..|++++ +.+|+++.+++.+|.++...|++++|+..+++++..+|++
T Consensus 2 ~~~~~l~~~~~~~-----------~~~~~A~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~- 68 (136)
T 2fo7_A 2 EAWYNLGNAYYKQ-----------GDYDEAIEYYQKAL-ELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS- 68 (136)
T ss_dssp HHHHHHHHHHHHH-----------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-
T ss_pred cHHHHHHHHHHHc-----------CcHHHHHHHHHHHH-HcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc-
Confidence 3577788877554 57899999999999 9999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Q 013299 352 LKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQV 420 (446)
Q Consensus 352 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~ 420 (446)
..+|..+|.++...|++++|+.+++++++..| ++..+++.+|.++...|++++|+..+++++++.|.
T Consensus 69 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 69 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 59999999999999999999999999999999 88999999999999999999999999999998764
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=5.3e-17 Score=138.70 Aligned_cols=116 Identities=15% Similarity=0.021 Sum_probs=82.6
Q ss_pred HHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 013299 182 TQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALEC 261 (446)
Q Consensus 182 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~ 261 (446)
..|++++.++|+++.+++.+|.++...|++++|+..|++++ ..+|+++.+++.+|.++.
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al--~~~p~~~~~~~~lg~~~~------------------- 66 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALC--VLDHYDSRFFLGLGACRQ------------------- 66 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHH-------------------
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHH--HcCcccHHHHHHHHHHHH-------------------
Confidence 45677777777777777777777777777777777777777 677776665554433321
Q ss_pred cCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013299 262 LGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAK 341 (446)
Q Consensus 262 ~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~ 341 (446)
. .|++++|+.+|++++ +++|+++.+++++|.++..+|++++|+..|+
T Consensus 67 ---------------------~-----------~g~~~~A~~~~~~al-~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 113 (148)
T 2vgx_A 67 ---------------------A-----------MGQYDLAIHSYSYGA-VMDIXEPRFPFHAAECLLQXGELAEAESGLF 113 (148)
T ss_dssp ---------------------H-----------TTCHHHHHHHHHHHH-HHSTTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ---------------------H-----------HhhHHHHHHHHHHHH-hcCCCCchHHHHHHHHHHHcCCHHHHHHHHH
Confidence 1 134667777777777 7777777777888888777888888888888
Q ss_pred HHHhhcCCCC
Q 013299 342 MLLKLEGGSN 351 (446)
Q Consensus 342 ~al~l~P~~~ 351 (446)
++++++|+++
T Consensus 114 ~al~~~p~~~ 123 (148)
T 2vgx_A 114 LAQELIANXP 123 (148)
T ss_dssp HHHHHHTTCG
T ss_pred HHHHHCcCCC
Confidence 8887777764
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.69 E-value=4.3e-16 Score=133.04 Aligned_cols=105 Identities=10% Similarity=0.110 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC-------CCHH-----HHHHHHHHHHHccCHHHHHHHHHHHHhh---
Q 013299 317 LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG-------SNLK-----GWLLMARILSAQKRYEDAETILNAALDQ--- 381 (446)
Q Consensus 317 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~-------~~~~-----~~~~la~~~~~~g~~~eA~~~~~~al~~--- 381 (446)
+..+.++|..+...|++++|+..|++|++++|+ + .. +|.++|.++..+|+|++|+..|++||++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~-~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFD-HAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCC-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhh-hccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 466789999999999999999999999999999 4 23 9999999999999999999999999999
Q ss_pred ----cCCCCcHHHH----HHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhh
Q 013299 382 ----TGKWEQGELL----RTKAKVQLVQGQLKGAVETYTHLLAALQVQTKT 424 (446)
Q Consensus 382 ----~p~~~~~~~~----~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~ 424 (446)
+| ++..+| +++|.++..+|++++|+++|++++++.|++...
T Consensus 90 ~~e~~p--d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 90 RGELNQ--DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HCCTTS--THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred cccCCC--chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 99 999999 999999999999999999999999999875443
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.68 E-value=3.5e-18 Score=166.42 Aligned_cols=200 Identities=11% Similarity=-0.001 Sum_probs=160.4
Q ss_pred CCcHHHHHHHHHHHHHHH----HhhcCCCCHHHHHHHHHHHH------------hcCCHHHHHHHHHhhCCCCCCcHHHH
Q 013299 135 RNNIEEAILLLMILLRKV----ALKRIEWDPSILDHLSFAFS------------IAGDLSSLATQIEELLPGIINRKERY 198 (446)
Q Consensus 135 ~~~~~eA~~~l~~~~~~~----~l~~~p~~~~~~~~lg~~l~------------~~~~~~~A~~~~~~al~~~p~~~~~~ 198 (446)
.+.+++|+..+ .. .+...|+. +|...|.... ..+++++|++.|++++..+|+++.+|
T Consensus 78 ~~~~e~al~~~-----~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~ 150 (336)
T 1p5q_A 78 PYGLERAIQRM-----EKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIV 150 (336)
T ss_dssp CHHHHHHHTTC-----CTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHH
T ss_pred chHHHHHHhcC-----CCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHH
Confidence 34567776643 22 34556665 5555565443 45677888889999999999999999
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhh
Q 013299 199 HILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLG 278 (446)
Q Consensus 199 ~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg 278 (446)
+++|.+++..|++++|+..|++++ .++|++... .. +++ .+. ......+++++|
T Consensus 151 ~~~g~~~~~~g~~~~A~~~y~~Al--~~~p~~~~~-----------~~--~~~-------~~~-----~~~~~~~~~nla 203 (336)
T 1p5q_A 151 KERGTVYFKEGKYKQALLQYKKIV--SWLEYESSF-----------SN--EEA-------QKA-----QALRLASHLNLA 203 (336)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHH--HHTTTCCCC-----------CS--HHH-------HHH-----HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH--HHhhccccC-----------Ch--HHH-------HHH-----HHHHHHHHHHHH
Confidence 999999999999999999999999 889987531 00 111 110 012356889999
Q ss_pred chhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHH
Q 013299 279 ISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLM 358 (446)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~l 358 (446)
.++... |++++|+..|++++ +++|+++.+++++|.++..+|++++|+..|+++++++|++ ..++..+
T Consensus 204 ~~~~~~-----------g~~~~A~~~~~~al-~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~-~~a~~~l 270 (336)
T 1p5q_A 204 MCHLKL-----------QAFSAAIESCNKAL-ELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN-KAAKTQL 270 (336)
T ss_dssp HHHHHT-----------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC-HHHHHHH
T ss_pred HHHHHc-----------CCHHHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC-HHHHHHH
Confidence 999765 57899999999999 9999999999999999999999999999999999999999 5999999
Q ss_pred HHHHHHccCHHHH-HHHHHHHHhh
Q 013299 359 ARILSAQKRYEDA-ETILNAALDQ 381 (446)
Q Consensus 359 a~~~~~~g~~~eA-~~~~~~al~~ 381 (446)
+.++..+|++++| ...|++++..
T Consensus 271 ~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 271 AVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 4577777754
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.68 E-value=6.3e-16 Score=127.39 Aligned_cols=121 Identities=13% Similarity=0.029 Sum_probs=105.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHH
Q 013299 314 MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRT 393 (446)
Q Consensus 314 P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~ 393 (446)
|.++..++.+|..+...|++++|+..|++++.++|++ ..+|.++|.++..+|++++|+..++++++++| +++.+++.
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~ 77 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED-ARGYSNRAAALAKLMSFPEAIADCNKAIEKDP--NFVRAYIR 77 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--CcHHHHHH
Confidence 5567889999999999999999999999999999999 59999999999999999999999999999999 89999999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhccCCcchhhHHhhhhcc
Q 013299 394 KAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKVYFMRKRV 441 (446)
Q Consensus 394 ~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 441 (446)
+|.++..+|++++|+..|++++++.|+.. ..|....+.....++
T Consensus 78 lg~~~~~~~~~~~A~~~~~~al~~~p~~~----~~p~~~~~~~~l~~~ 121 (126)
T 3upv_A 78 KATAQIAVKEYASALETLDAARTKDAEVN----NGSSAREIDQLYYKA 121 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHH----TTTTHHHHHHHHHHH
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHhCcccC----CchhHHHHHHHHHHH
Confidence 99999999999999999999999996543 224444444444443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.67 E-value=2.4e-15 Score=129.02 Aligned_cols=135 Identities=13% Similarity=0.032 Sum_probs=123.0
Q ss_pred hHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Q 013299 271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS 350 (446)
Q Consensus 271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~ 350 (446)
+..++.+|.++... |++++|+..|++++ +++|+++.+++++|.++...|++++|+..+++++.++|++
T Consensus 13 ~~~~~~~a~~~~~~-----------~~~~~A~~~~~~al-~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~ 80 (166)
T 1a17_A 13 AEELKTQANDYFKA-----------KDYENAIKFYSQAI-ELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY 80 (166)
T ss_dssp HHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHc-----------cCHHHHHHHHHHHH-HhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 56778888887654 57899999999999 9999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHH--HHHHHHHhCCHHHHHHHHHHHHHHHhh
Q 013299 351 NLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRT--KAKVQLVQGQLKGAVETYTHLLAALQV 420 (446)
Q Consensus 351 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~--~a~~~~~~g~~~eA~~~~~~~l~l~~~ 420 (446)
..+|..+|.++..+|++++|+.+++++++.+| ++..++.. ++..+...|++++|++.+.++.++.+.
T Consensus 81 -~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 149 (166)
T 1a17_A 81 -IKGYYRRAASNMALGKFRAALRDYETVVKVKP--HDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDS 149 (166)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHhcc
Confidence 59999999999999999999999999999999 78888744 555588999999999999999988765
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.67 E-value=2.9e-16 Score=132.78 Aligned_cols=125 Identities=16% Similarity=0.006 Sum_probs=85.1
Q ss_pred HHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 013299 182 TQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALEC 261 (446)
Q Consensus 182 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~ 261 (446)
..|++++.++|+++.+++.+|.++...|++++|+..|++++ ..+|+++.+++.+|.++..
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al--~~~p~~~~~~~~lg~~~~~------------------ 64 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALC--MLDHYDARYFLGLGACRQS------------------ 64 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHH------------------
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHH--HhCCccHHHHHHHHHHHHH------------------
Confidence 45677777777777777777777777777777777777777 6777766655544433211
Q ss_pred cCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013299 262 LGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAK 341 (446)
Q Consensus 262 ~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~ 341 (446)
.|++++|+.+|++++ .++|+++.+++++|.++..+|++++|+..|+
T Consensus 65 ---------------------------------~g~~~~A~~~~~~al-~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 110 (142)
T 2xcb_A 65 ---------------------------------LGLYEQALQSYSYGA-LMDINEPRFPFHAAECHLQLGDLDGAESGFY 110 (142)
T ss_dssp ---------------------------------TTCHHHHHHHHHHHH-HHCTTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ---------------------------------HhhHHHHHHHHHHHH-hcCCCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 134677777777777 7788888888888888888888888888888
Q ss_pred HHHhhcCCCCHHHHHHHHHH
Q 013299 342 MLLKLEGGSNLKGWLLMARI 361 (446)
Q Consensus 342 ~al~l~P~~~~~~~~~la~~ 361 (446)
+++.++|+++ ..+.....+
T Consensus 111 ~al~~~p~~~-~~~~~~~~~ 129 (142)
T 2xcb_A 111 SARALAAAQP-AHEALAARA 129 (142)
T ss_dssp HHHHHHHTCG-GGHHHHHHH
T ss_pred HHHHhCCCCc-chHHHHHHH
Confidence 8888887764 554444333
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.5e-15 Score=137.63 Aligned_cols=180 Identities=9% Similarity=-0.065 Sum_probs=154.8
Q ss_pred HHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhch
Q 013299 212 LVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITD 291 (446)
Q Consensus 212 ~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~ 291 (446)
.+|+..|+++. . .+++.+++.+|.++.. .+++++|+.+|+++++. .+ +.+++.+|.+|...+.
T Consensus 3 ~eA~~~~~~aa--~--~g~~~a~~~lg~~~~~-~~~~~~A~~~~~~a~~~--g~-----~~a~~~lg~~y~~~g~----- 65 (212)
T 3rjv_A 3 TEPGSQYQQQA--E--AGDRRAQYYLADTWVS-SGDYQKAEYWAQKAAAQ--GD-----GDALALLAQLKIRNPQ----- 65 (212)
T ss_dssp -CTTHHHHHHH--H--TTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHT--TC-----HHHHHHHHHHTTSSTT-----
T ss_pred chHHHHHHHHH--H--CCCHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHc--CC-----HHHHHHHHHHHHcCCC-----
Confidence 47889999999 3 4889999988887665 68999999999999983 22 5789999999876211
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHH-
Q 013299 292 FDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAE----QRKLNAAHYYAKMLLKLEG--GSNLKGWLLMARILSA- 364 (446)
Q Consensus 292 ~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~----~~~~~~A~~~~~~al~l~P--~~~~~~~~~la~~~~~- 364 (446)
..++++|+.+|++++ + ++++.++++||.+|.. .+++++|+.+|++|+...| ++ ..++++||.++..
T Consensus 66 ---~~~~~~A~~~~~~A~-~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~-~~a~~~Lg~~y~~g 138 (212)
T 3rjv_A 66 ---QADYPQARQLAEKAV-E--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAA-VDAQMLLGLIYASG 138 (212)
T ss_dssp ---SCCHHHHHHHHHHHH-H--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHH-HHHHHHHHHHHHHT
T ss_pred ---CCCHHHHHHHHHHHH-H--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcch-HHHHHHHHHHHHcC
Confidence 125899999999998 5 6899999999999998 8999999999999999988 45 4999999999999
Q ss_pred ---ccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHh-C-----CHHHHHHHHHHHHHHH
Q 013299 365 ---QKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQ-G-----QLKGAVETYTHLLAAL 418 (446)
Q Consensus 365 ---~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~-g-----~~~eA~~~~~~~l~l~ 418 (446)
.+++++|+.+|+++++. | +++.+++++|.++... | ++++|+..|+++.+.-
T Consensus 139 ~g~~~d~~~A~~~~~~A~~~-~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 139 VHGPEDDVKASEYFKGSSSL-S--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp SSSSCCHHHHHHHHHHHHHT-S--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHc-C--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 89999999999999998 5 5778999999999764 3 8999999999999874
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1e-15 Score=159.17 Aligned_cols=195 Identities=10% Similarity=0.005 Sum_probs=167.8
Q ss_pred HHhcCCH-HHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCC----------hHHHHHHHHHHhcCCCCCCChHHHHHHHH
Q 013299 171 FSIAGDL-SSLATQIEELLPGIINRKERYHILALCYYGAGE----------DLVALNLLRTLLSGSEDPKCLPALLIASK 239 (446)
Q Consensus 171 l~~~~~~-~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~----------~~eA~~~~~~al~~~~~P~~~~a~~~~~~ 239 (446)
+...|++ ++|++.+++++.++|++..+|+..+.++...|+ +++|+..+++++ ..+|++..+|...+.
T Consensus 38 ~~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l--~~~pK~y~aW~hR~w 115 (567)
T 1dce_A 38 KRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCL--RVNPKSYGTWHHRCW 115 (567)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH--HHCTTCHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHH--HhCCCCHHHHHHHHH
Confidence 3445544 788999999999999999999999999999998 899999999999 889999888877655
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHH
Q 013299 240 ICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSI 319 (446)
Q Consensus 240 ~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a 319 (446)
++. ..+. .+++++++.+.+++ ++||+|..+
T Consensus 116 ~l~-~l~~------------------------------------------------~~~~~el~~~~k~l-~~d~~N~~a 145 (567)
T 1dce_A 116 LLS-RLPE------------------------------------------------PNWARELELCARFL-EADERNFHC 145 (567)
T ss_dssp HHH-TCSS------------------------------------------------CCHHHHHHHHHHHH-HHCTTCHHH
T ss_pred HHH-Hccc------------------------------------------------ccHHHHHHHHHHHH-hhccccccH
Confidence 432 1210 02578999999999 999999999
Q ss_pred HHHHHHHHHHcC-CHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHc--------------cCHHHHHHHHHHHHhhcCC
Q 013299 320 LYRLSLEYAEQR-KLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQ--------------KRYEDAETILNAALDQTGK 384 (446)
Q Consensus 320 ~~~lg~~~~~~~-~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~--------------g~~~eA~~~~~~al~~~p~ 384 (446)
|++.|.++...| .++++++++.++++.+|.+ ..+|++++.++..+ +++++|++++++|+..+|
T Consensus 146 W~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n-~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P- 223 (567)
T 1dce_A 146 WDYRRFVAAQAAVAPAEELAFTDSLITRNFSN-YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDP- 223 (567)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCC-HHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCS-
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHCCCC-ccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCC-
Confidence 999999999999 9999999999999999999 59999999999885 778999999999999999
Q ss_pred CCcHHHHHHHHHHHHHhCCHHH------------HHHHHHHHHHHHhh
Q 013299 385 WEQGELLRTKAKVQLVQGQLKG------------AVETYTHLLAALQV 420 (446)
Q Consensus 385 ~~~~~~~~~~a~~~~~~g~~~e------------A~~~~~~~l~l~~~ 420 (446)
++..+|++++.++...|++++ |+..|.+++.+.|.
T Consensus 224 -~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~~ 270 (567)
T 1dce_A 224 -NDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSR 270 (567)
T ss_dssp -SCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEECTTBT
T ss_pred -CCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEeccceecccc
Confidence 899999999999999998766 56667777776654
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.67 E-value=4.4e-16 Score=136.27 Aligned_cols=123 Identities=15% Similarity=0.150 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHH-HHHccCH--HHH
Q 013299 295 ATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARI-LSAQKRY--EDA 371 (446)
Q Consensus 295 ~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~-~~~~g~~--~eA 371 (446)
.+++++|+..|++++ +.+|+++.+++.+|.++...|++++|+..|++++.++|++ ..+|..+|.+ +...|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al-~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKI-RANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN-AELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHH-HHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHhcCCcchHHH
Confidence 467899999999999 9999999999999999999999999999999999999999 5999999999 8899999 999
Q ss_pred HHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhh
Q 013299 372 ETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQ 421 (446)
Q Consensus 372 ~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~ 421 (446)
+.+++++++.+| ++..+++.+|.++...|++++|+..|++++++.|.+
T Consensus 101 ~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 101 RAMIDKALALDS--NEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHhCC--CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 999999999999 899999999999999999999999999999998764
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.65 E-value=2.9e-16 Score=148.88 Aligned_cols=198 Identities=10% Similarity=0.010 Sum_probs=157.3
Q ss_pred CCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhh
Q 013299 192 INRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMES 271 (446)
Q Consensus 192 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~ 271 (446)
|+++.+++.+|.++...|++++|+..|++++ ..+|+++.++..+|.++. ..|++++|+..++++++..|.+ .
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al--~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~p~~-----~ 72 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAI--TRNPLVAVYYTNRALCYL-KMQQPEQALADCRRALELDGQS-----V 72 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHTTSCTTC-----H
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhCCccHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCC-----H
Confidence 6788999999999999999999999999999 899999999988877655 4789999999999999954433 6
Q ss_pred HHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Q 013299 272 TANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN 351 (446)
Q Consensus 272 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~ 351 (446)
.+++.+|.++... |++++|+..|++++ +++|+++..+........ +..++...........|.++
T Consensus 73 ~~~~~lg~~~~~~-----------g~~~~A~~~~~~al-~l~p~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 137 (281)
T 2c2l_A 73 KAHFFLGQCQLEM-----------ESYDEAIANLQRAY-SLAKEQRLNFGDDIPSAL---RIAKKKRWNSIEERRIHQES 137 (281)
T ss_dssp HHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHHHHTTCCCCSHHHHHH---HHHHHHHHHHHHHTCCCCCC
T ss_pred HHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-HhCccchhhHHHHHHHHH---HHHHHHHHHHHHHHHHhhhH
Confidence 7899999998664 57899999999999 999987544333322222 23333444444456677775
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHH
Q 013299 352 LKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQ-GQLKGAVETYTHLLAA 417 (446)
Q Consensus 352 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~-g~~~eA~~~~~~~l~l 417 (446)
.....++.++ .|++++|+..++++++.+| ++......++.++... +++++|.+.|+++.+.
T Consensus 138 -~i~~~l~~l~--~~~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 138 -ELHSYLTRLI--AAERERELEECQRNHEGHE--DDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp -HHHHHHHHHH--HHHHHHHHTTTSGGGTTTS--CHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred -HHHHHHHHHH--HHHHHHHHHHHHhhhcccc--chhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 8888887765 7999999999999999999 8888877777777666 7788899988887653
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.3e-15 Score=123.02 Aligned_cols=115 Identities=15% Similarity=0.075 Sum_probs=105.9
Q ss_pred hHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Q 013299 271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS 350 (446)
Q Consensus 271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~ 350 (446)
+..+..+|..+... |++++|+..|++++ +++|+++.+++++|.++..+|++++|+..|+++++++|++
T Consensus 4 a~~~~~~g~~~~~~-----------~~~~~A~~~~~~al-~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 71 (126)
T 3upv_A 4 AEEARLEGKEYFTK-----------SDWPNAVKAYTEMI-KRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF 71 (126)
T ss_dssp HHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHh-----------cCHHHHHHHHHHHH-HhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 56788888888654 57899999999999 9999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhc------CCCCcHHHHHHHHHHHHH
Q 013299 351 NLKGWLLMARILSAQKRYEDAETILNAALDQT------GKWEQGELLRTKAKVQLV 400 (446)
Q Consensus 351 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~------p~~~~~~~~~~~a~~~~~ 400 (446)
..+|..+|.++..+|++++|+..++++++++ | ++..++..++.+...
T Consensus 72 -~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p--~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 72 -VRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGS--SAREIDQLYYKASQQ 124 (126)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTT--THHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCch--hHHHHHHHHHHHHHh
Confidence 5999999999999999999999999999999 8 888888888776654
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.2e-15 Score=129.30 Aligned_cols=106 Identities=14% Similarity=-0.019 Sum_probs=73.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHH
Q 013299 313 NMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLR 392 (446)
Q Consensus 313 ~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~ 392 (446)
+|.++.+++.+|.++...|++++|+..|++++.++|++ ..+|.++|.++..+|+|++|+.+|+++++++| ++..+|+
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~ 83 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPAN-PIYLSNRAAAYSASGQHEKAAEDAELATVVDP--KYSKAWS 83 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CCHHHHH
Confidence 45556666777777777777777777777777777776 36777777777777777777777777777777 6667777
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHhhh
Q 013299 393 TKAKVQLVQGQLKGAVETYTHLLAALQVQ 421 (446)
Q Consensus 393 ~~a~~~~~~g~~~eA~~~~~~~l~l~~~~ 421 (446)
++|.++..+|++++|+..|++++++.|++
T Consensus 84 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 112 (164)
T 3sz7_A 84 RLGLARFDMADYKGAKEAYEKGIEAEGNG 112 (164)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCc
Confidence 77777777777777777777777766543
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1.1e-14 Score=119.37 Aligned_cols=133 Identities=21% Similarity=0.262 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHH
Q 013299 196 ERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANC 275 (446)
Q Consensus 196 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~ 275 (446)
++|+.+|.++...|++++|+..|++++ ..+|+++.++..++
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~~~~a------------------------------------- 42 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKAL--ELDPRSAEAWYNLG------------------------------------- 42 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHH--HHCTTCHHHHHHHH-------------------------------------
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHH--HcCCcchhHHHHHH-------------------------------------
Confidence 456777777777777777777777777 56666554443332
Q ss_pred HhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHH
Q 013299 276 LLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGW 355 (446)
Q Consensus 276 ~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 355 (446)
.++.. .+++++|+..|++++ ..+|+++.+++.+|.++...|++++|+..+++++...|++ ..++
T Consensus 43 ---~~~~~-----------~~~~~~A~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~ 106 (136)
T 2fo7_A 43 ---NAYYK-----------QGDYDEAIEYYQKAL-ELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS-AEAW 106 (136)
T ss_dssp ---HHHHH-----------HTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC-HHHH
T ss_pred ---HHHHH-----------hcCHHHHHHHHHHHH-HHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-hHHH
Confidence 22221 234677777777788 7888888888888888888888888888888888888877 4788
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013299 356 LLMARILSAQKRYEDAETILNAALDQTG 383 (446)
Q Consensus 356 ~~la~~~~~~g~~~eA~~~~~~al~~~p 383 (446)
..+|.++...|++++|+.++++++..+|
T Consensus 107 ~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 107 YNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 8888888888888888888888887777
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.6e-15 Score=125.86 Aligned_cols=104 Identities=13% Similarity=0.117 Sum_probs=92.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCC-----cHH
Q 013299 315 RDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWE-----QGE 389 (446)
Q Consensus 315 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~-----~~~ 389 (446)
+.+.++.++|.++..+|++++|+.+|++|++++|++ ..+|.++|.++..+|+|++|+..++++++++|+.. ...
T Consensus 6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~-~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~ 84 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSN-ITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAK 84 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHH
Confidence 445678899999999999999999999999999999 59999999999999999999999999999987211 145
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Q 013299 390 LLRTKAKVQLVQGQLKGAVETYTHLLAALQ 419 (446)
Q Consensus 390 ~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~ 419 (446)
+++++|.++..+|++++|++.|++++++.|
T Consensus 85 ~~~~lg~~~~~~~~~~~A~~~~~kal~~~~ 114 (127)
T 4gcn_A 85 AMSRAGNAFQKQNDLSLAVQWFHRSLSEFR 114 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 788999999999999999999999999875
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.4e-14 Score=136.09 Aligned_cols=182 Identities=13% Similarity=0.095 Sum_probs=135.3
Q ss_pred CCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhh
Q 013299 192 INRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMES 271 (446)
Q Consensus 192 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~ 271 (446)
|.....+...+..+...|++++|+..+++++ ...|........ .
T Consensus 72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l--~~~~~~~~~~~~----------------------------------~ 115 (293)
T 2qfc_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNEL--KKEEYHPEFQQF----------------------------------L 115 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HTCCCCHHHHHH----------------------------------H
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHh--ccccCChhHHHH----------------------------------H
Confidence 3445566777888889999999999999999 666654432110 1
Q ss_pred HHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHH-
Q 013299 272 TANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRD------LSILYRLSLEYAEQRKLNAAHYYAKMLL- 344 (446)
Q Consensus 272 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~------~~a~~~lg~~~~~~~~~~~A~~~~~~al- 344 (446)
..++.+|.++... |++++|+..|++++ ++.+.. ..+++++|.+|..+|++++|+.+|++|+
T Consensus 116 ~~~~~~~~~~~~~-----------~~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~ 183 (293)
T 2qfc_A 116 QWQYYVAAYVLKK-----------VDYEYCILELKKLL-NQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILK 183 (293)
T ss_dssp HHHHHHHHHHHTS-----------SCHHHHHHHHHHHH-TTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-----------CCHHHHHHHHHHHH-HHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1223344444332 35677788888777 765544 5688999999999999999999999999
Q ss_pred --hhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCC----cHHHHHHHHHHHHHhCCHHHH-HHHHHHH
Q 013299 345 --KLEGGSN---LKGWLLMARILSAQKRYEDAETILNAALDQTGKWE----QGELLRTKAKVQLVQGQLKGA-VETYTHL 414 (446)
Q Consensus 345 --~l~P~~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~----~~~~~~~~a~~~~~~g~~~eA-~~~~~~~ 414 (446)
...|+++ ..++.++|.++..+|+|++|+.+++++++..++.+ ...+++++|.++..+|++++| ...|+++
T Consensus 184 ~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 184 QLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 4455531 15888999999999999999999999998754101 278899999999999999999 7789999
Q ss_pred HHHHhhh
Q 013299 415 LAALQVQ 421 (446)
Q Consensus 415 l~l~~~~ 421 (446)
+.+....
T Consensus 264 l~~~~~~ 270 (293)
T 2qfc_A 264 SFFFDIL 270 (293)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9987543
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.62 E-value=5.3e-15 Score=132.89 Aligned_cols=132 Identities=14% Similarity=0.076 Sum_probs=119.5
Q ss_pred HHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Q 013299 272 TANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN 351 (446)
Q Consensus 272 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~ 351 (446)
..++.+|.++... |++++|+..|++++ . | ++.+++++|.++...|++++|+..|++++.++|++
T Consensus 7 ~~~~~~g~~~~~~-----------~~~~~A~~~~~~a~-~--~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~- 70 (213)
T 1hh8_A 7 ISLWNEGVLAADK-----------KDWKGALDAFSAVQ-D--P-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL- 70 (213)
T ss_dssp HHHHHHHHHHHHT-----------TCHHHHHHHHHTSS-S--C-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-
T ss_pred HHHHHHHHHHHHh-----------CCHHHHHHHHHHHc-C--C-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-
Confidence 4566777777554 57899999999876 3 3 78999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcH----------------HHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 013299 352 LKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQG----------------ELLRTKAKVQLVQGQLKGAVETYTHLL 415 (446)
Q Consensus 352 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~----------------~~~~~~a~~~~~~g~~~eA~~~~~~~l 415 (446)
..+|.++|.++..+|++++|+.+++++++..| ++. .+++++|.++..+|++++|++.|++++
T Consensus 71 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 71 AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLR--GNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTT--TCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC--CccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 59999999999999999999999999999888 544 999999999999999999999999999
Q ss_pred HHHhhh
Q 013299 416 AALQVQ 421 (446)
Q Consensus 416 ~l~~~~ 421 (446)
++.|+.
T Consensus 149 ~~~p~~ 154 (213)
T 1hh8_A 149 SMKSEP 154 (213)
T ss_dssp TTCCSG
T ss_pred HcCccc
Confidence 998864
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.62 E-value=6.1e-15 Score=122.32 Aligned_cols=102 Identities=14% Similarity=0.100 Sum_probs=93.9
Q ss_pred hhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 013299 270 ESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG 349 (446)
Q Consensus 270 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~ 349 (446)
.+.++..+|.++..+ |++++|+.+|++|+ +++|+++.+++++|.+|..+|++++|+..|+++++++|+
T Consensus 7 ~A~a~~~lG~~~~~~-----------~~~~~A~~~y~~Al-~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~ 74 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQ-----------KDFEKAHVHYDKAI-ELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRE 74 (127)
T ss_dssp HHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-HhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcc
Confidence 366788999998765 57999999999999 999999999999999999999999999999999999998
Q ss_pred CC------HHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013299 350 SN------LKGWLLMARILSAQKRYEDAETILNAALDQTG 383 (446)
Q Consensus 350 ~~------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 383 (446)
+. +.++..+|.++..+|++++|+.+|++++...|
T Consensus 75 ~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~ 114 (127)
T 4gcn_A 75 TRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFR 114 (127)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred cchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 63 24788999999999999999999999999988
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=4.1e-15 Score=126.71 Aligned_cols=93 Identities=15% Similarity=0.097 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhcCCCCHHHHHHHHHH
Q 013299 292 FDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKL----------NAAHYYAKMLLKLEGGSNLKGWLLMARI 361 (446)
Q Consensus 292 ~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~----------~~A~~~~~~al~l~P~~~~~~~~~la~~ 361 (446)
.++.+++++|+..+++++ +++|+++++|+++|.++...+++ ++|+..|++|++++|++ ..+|+++|.+
T Consensus 12 ~~r~~~feeA~~~~~~Ai-~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~-~~A~~~LG~a 89 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTY-KSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK-DEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCc-HHHHHHHHHH
Confidence 367789999999999999 99999999999999999998875 59999999999999999 5999999999
Q ss_pred HHHcc-----------CHHHHHHHHHHHHhhcCCCCcH
Q 013299 362 LSAQK-----------RYEDAETILNAALDQTGKWEQG 388 (446)
Q Consensus 362 ~~~~g-----------~~~eA~~~~~~al~~~p~~~~~ 388 (446)
|..+| ++++|+.+|++|++++| ++.
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P--~~~ 125 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP--DNT 125 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT--TCH
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHHhCC--CCH
Confidence 99885 89999999999999999 764
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=3.9e-15 Score=122.47 Aligned_cols=101 Identities=12% Similarity=-0.000 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHH
Q 013299 319 ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQ 398 (446)
Q Consensus 319 a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~ 398 (446)
.++.+|.++...|++++|+..|+++++++|++ ..+|+.+|.++..+|++++|+..|+++++++| ++..+++.+|.++
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~-~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P--~~~~~~~~la~~~ 95 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPER-EEAWRSLGLTQAENEKDGLAIIALNHARMLDP--KDIAVHAALAVSH 95 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHH
Confidence 46788888888888888888888888888888 48888888888888888888888888888888 7888888888888
Q ss_pred HHhCCHHHHHHHHHHHHHHHhhhh
Q 013299 399 LVQGQLKGAVETYTHLLAALQVQT 422 (446)
Q Consensus 399 ~~~g~~~eA~~~~~~~l~l~~~~~ 422 (446)
...|++++|+..|++++++.|++.
T Consensus 96 ~~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC------
T ss_pred HHcCCHHHHHHHHHHHHHhCcCCC
Confidence 888888888888888888877543
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.5e-14 Score=120.27 Aligned_cols=108 Identities=13% Similarity=-0.051 Sum_probs=102.4
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHH
Q 013299 311 STNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGEL 390 (446)
Q Consensus 311 ~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 390 (446)
..+|.++.+++.+|.++...|++++|+..|++++.++|++ ..+|.++|.++..+|++++|+.+++++++.+| +++.+
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~ 79 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV-AVYYTNRALCYLKMQQPEQALADCRRALELDG--QSVKA 79 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHH
T ss_pred CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc--hhHHH
Confidence 4678999999999999999999999999999999999999 59999999999999999999999999999999 89999
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHhhh
Q 013299 391 LRTKAKVQLVQGQLKGAVETYTHLLAALQVQ 421 (446)
Q Consensus 391 ~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~ 421 (446)
++.+|.++...|++++|+..|++++++.|++
T Consensus 80 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 110 (137)
T 3q49_B 80 HFFLGQCQLEMESYDEAIANLQRAYSLAKEQ 110 (137)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHChhH
Confidence 9999999999999999999999999999874
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.7e-14 Score=149.91 Aligned_cols=168 Identities=10% Similarity=-0.031 Sum_probs=133.2
Q ss_pred CHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 013299 247 LAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLE 326 (446)
Q Consensus 247 ~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~ 326 (446)
..++|+..++++++..|.+ ..+|+..|.++...++... .......+++++..+++++ +.+|+++.+|++.+++
T Consensus 44 ~~eeal~~~~~~l~~nP~~-----~taW~~R~~~l~~l~~~~~-~~~~~~~~~~eL~~~~~~l-~~~pK~y~aW~hR~w~ 116 (567)
T 1dce_A 44 LDESVLELTSQILGANPDF-----ATLWNCRREVLQHLETEKS-PEESAALVKAELGFLESCL-RVNPKSYGTWHHRCWL 116 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHH-HHCTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCchh-----HHHHHHHHHHHHhcccccc-hhhhhhhHHHHHHHHHHHH-HhCCCCHHHHHHHHHH
Confidence 3345555555555533222 3455555555543322000 0011234899999999999 9999999999999999
Q ss_pred HHHcC--CHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHh--
Q 013299 327 YAEQR--KLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQK-RYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQ-- 401 (446)
Q Consensus 327 ~~~~~--~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g-~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~-- 401 (446)
+...+ ++++|+..+.++++++|.+ ..+|...++++...| .+++++++++++++.+| .+..+|.+++.++...
T Consensus 117 l~~l~~~~~~~el~~~~k~l~~d~~N-~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p--~n~saW~~r~~ll~~l~~ 193 (567)
T 1dce_A 117 LSRLPEPNWARELELCARFLEADERN-FHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF--SNYSSWHYRSCLLPQLHP 193 (567)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC--CCHHHHHHHHHHHHHHSC
T ss_pred HHHcccccHHHHHHHHHHHHhhcccc-ccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC--CCccHHHHHHHHHHhhcc
Confidence 99999 7799999999999999999 699999999999999 89999999999999999 8999999999999885
Q ss_pred ------------CCHHHHHHHHHHHHHHHhhhhhh
Q 013299 402 ------------GQLKGAVETYTHLLAALQVQTKT 424 (446)
Q Consensus 402 ------------g~~~eA~~~~~~~l~l~~~~~~~ 424 (446)
++++++++.+.+++.+.|++..+
T Consensus 194 ~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~sa 228 (567)
T 1dce_A 194 QPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSA 228 (567)
T ss_dssp CCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHH
T ss_pred cccccccccccHHHHHHHHHHHHHHHhhCCCCccH
Confidence 66899999999999998654433
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.61 E-value=7.3e-15 Score=127.01 Aligned_cols=114 Identities=16% Similarity=0.122 Sum_probs=104.3
Q ss_pred hhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 013299 270 ESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG 349 (446)
Q Consensus 270 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~ 349 (446)
.+.+++.+|.++... |++++|+..|++++ +++|+++.+++++|.++..+|++++|+..|++++.++|+
T Consensus 10 ~a~~~~~~g~~~~~~-----------g~~~~A~~~~~~al-~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 77 (164)
T 3sz7_A 10 ESDKLKSEGNAAMAR-----------KEYSKAIDLYTQAL-SIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK 77 (164)
T ss_dssp HHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-HhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 467888899888664 57899999999999 999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHH
Q 013299 350 SNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQ 398 (446)
Q Consensus 350 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~ 398 (446)
+ ..+|+++|.++..+|++++|+.+|+++++++| ++..+++.++...
T Consensus 78 ~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~~~l~~ 123 (164)
T 3sz7_A 78 Y-SKAWSRLGLARFDMADYKGAKEAYEKGIEAEG--NGGSDAMKRGLET 123 (164)
T ss_dssp C-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHS--SSCCHHHHHHHHH
T ss_pred C-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CchHHHHHHHHHH
Confidence 9 59999999999999999999999999999999 7777777665543
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=8.6e-16 Score=137.22 Aligned_cols=96 Identities=14% Similarity=0.052 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHH
Q 013299 318 SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKV 397 (446)
Q Consensus 318 ~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~ 397 (446)
.+++++|.++..+|++++|+.+|++++.++|++ ..+++.+|.++..+|++++|+.+|+++++++| ++..++..++.+
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~l~~~ 165 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNN-VKALYKLGVANMYFGFLEEAKENLYKAASLNP--NNLDIRNSYELC 165 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST--TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC--CcHHHHHHHHHH
Confidence 788999999999999999999999999999999 59999999999999999999999999999999 899999999999
Q ss_pred HHHhCCHHHHH-HHHHHHHH
Q 013299 398 QLVQGQLKGAV-ETYTHLLA 416 (446)
Q Consensus 398 ~~~~g~~~eA~-~~~~~~l~ 416 (446)
+...|+.+++. ..|.+.+.
T Consensus 166 ~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 166 VNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHHHHHHC-----------
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 99998888877 55555544
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.60 E-value=2.1e-14 Score=128.90 Aligned_cols=165 Identities=10% Similarity=0.006 Sum_probs=131.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHH
Q 013299 162 SILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKIC 241 (446)
Q Consensus 162 ~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~ 241 (446)
..++.+|.++...|++++|+..|++++ +| ++.+|+++|.++...|++++|+..|++++ ..+|+++.+++.+|.++
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al--~~~~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSI--NRDKHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhCccchHHHHHHHHHH
Confidence 346789999999999999999999997 33 78999999999999999999999999999 89999999988887765
Q ss_pred hcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHH
Q 013299 242 GEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILY 321 (446)
Q Consensus 242 ~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~ 321 (446)
.. .|++++|+.+|+++++..|.+.. ..+. ...+ ..+|.++.+++
T Consensus 82 ~~-~~~~~~A~~~~~~al~~~~~~~~-----------~~~~-----------------------~~~~-~~~~~~~~~~~ 125 (213)
T 1hh8_A 82 YQ-TEKYDLAIKDLKEALIQLRGNQL-----------IDYK-----------------------ILGL-QFKLFACEVLY 125 (213)
T ss_dssp HH-TTCHHHHHHHHHHHHHTTTTCSE-----------EECG-----------------------GGTB-CCEEEHHHHHH
T ss_pred HH-cccHHHHHHHHHHHHHhCCCccH-----------HHHH-----------------------Hhcc-ccCccchHHHH
Confidence 54 68888888888888885544321 0011 1122 56677789999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 013299 322 RLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALD 380 (446)
Q Consensus 322 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 380 (446)
++|.++..+|++++|+..|++++.++|++. . ++.++|+..+.+...
T Consensus 126 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-~------------~~~~~a~~~~~~~~~ 171 (213)
T 1hh8_A 126 NIAFMYAKKEEWKKAEEQLALATSMKSEPR-H------------SKIDKAMECVWKQKL 171 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCSGG-G------------GHHHHHHHHHHTTCC
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHcCcccc-c------------chHHHHHHHHHhccc
Confidence 999999999999999999999999999863 2 455566666655443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.4e-14 Score=119.23 Aligned_cols=120 Identities=18% Similarity=0.125 Sum_probs=109.4
Q ss_pred hhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC
Q 013299 269 MESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEG 348 (446)
Q Consensus 269 ~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P 348 (446)
....+++.+|.++... +++++|+..|++++ +.+|+++.+++.+|.++...|++++|+..+++++.++|
T Consensus 14 ~~~~~~~~~~~~~~~~-----------~~~~~A~~~~~~al-~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 81 (133)
T 2lni_A 14 DLALMVKNKGNECFQK-----------GDYPQAMKHYTEAI-KRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP 81 (133)
T ss_dssp CHHHHHHHHHHHHHHT-----------TCSHHHHHHHHHHH-TTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT
T ss_pred ccHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-HcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 3467888899888654 56899999999999 99999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCC
Q 013299 349 GSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQ 403 (446)
Q Consensus 349 ~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~ 403 (446)
++ ..+|..+|.++..+|++++|+.+++++++.+| ++..++..++.++..+|+
T Consensus 82 ~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 82 TF-IKGYTRKAAALEAMKDYTKAMDVYQKALDLDS--SCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp TC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCG--GGTHHHHHHHHHHHHHTC
T ss_pred Cc-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCC--CchHHHHHHHHHHHHhcC
Confidence 98 59999999999999999999999999999999 888999999999988774
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.60 E-value=7.1e-16 Score=152.63 Aligned_cols=291 Identities=14% Similarity=0.059 Sum_probs=136.5
Q ss_pred hhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHhCCCCCCC
Q 013299 18 KCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRALLPCWNLD 97 (446)
Q Consensus 18 ~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~al~~~~~~~ 97 (446)
..+...|++++|.+.++++ . +|+ ++..+|.++.+.|++++|+..|.++- +
T Consensus 11 ~ll~~~~~ld~A~~fae~~-~---------~~~--------------vWs~La~A~l~~g~~~eAIdsfika~------D 60 (449)
T 1b89_A 11 VLIEHIGNLDRAYEFAERC-N---------EPA--------------VWSQLAKAQLQKGMVKEAIDSYIKAD------D 60 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHccCHHHHHHHHHhC-C---------ChH--------------HHHHHHHHHHHcCCHHHHHHHHHcCC------C
Confidence 3456788888888887765 1 233 55677889999999999999997741 3
Q ss_pred hHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCH
Q 013299 98 AETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDL 177 (446)
Q Consensus 98 ~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~ 177 (446)
|.... ..+..+...|++++|+..+ +.+.+. ..++.+...++.++.+.|++
T Consensus 61 ~~~y~------------------------~V~~~ae~~g~~EeAi~yl-----~~ark~-~~~~~i~~~Li~~Y~Klg~l 110 (449)
T 1b89_A 61 PSSYM------------------------EVVQAANTSGNWEELVKYL-----QMARKK-ARESYVETELIFALAKTNRL 110 (449)
T ss_dssp ------------------------------------------------------------------------------CH
T ss_pred HHHHH------------------------HHHHHHHhCCCHHHHHHHH-----HHHHHh-CccchhHHHHHHHHHHhCCH
Confidence 32211 1122344578899999865 333333 33477888999999999999
Q ss_pred HHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 013299 178 SSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASR 257 (446)
Q Consensus 178 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~ 257 (446)
+++.+.++. | +..+|..+|..+...|+|++|...|.++- .+..++ .|+.++|++++|++.+++
T Consensus 111 ~e~e~f~~~-----p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a~----------n~~~LA-~~L~~Lg~yq~AVea~~K 173 (449)
T 1b89_A 111 AELEEFING-----P-NNAHIQQVGDRCYDEKMYDAAKLLYNNVS----------NFGRLA-STLVHLGEYQAAVDGARK 173 (449)
T ss_dssp HHHTTTTTC-----C-----------------CTTTHHHHHHHTT----------CHHHHH-HHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcC-----C-cHHHHHHHHHHHHHcCCHHHHHHHHHHhh----------hHHHHH-HHHHHhccHHHHHHHHHH
Confidence 999887752 4 44699999999999999999999999863 233344 456678999999999999
Q ss_pred HHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 013299 258 ALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAH 337 (446)
Q Consensus 258 al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~ 337 (446)
+.. ...|...+.++... |+++.|..+... + ..+|++ ...+...|...|++++|+
T Consensus 174 A~~----------~~~Wk~v~~aCv~~-----------~ef~lA~~~~l~-L-~~~ad~---l~~lv~~Yek~G~~eEai 227 (449)
T 1b89_A 174 ANS----------TRTWKEVCFACVDG-----------KEFRLAQMCGLH-I-VVHADE---LEELINYYQDRGYFEELI 227 (449)
T ss_dssp HTC----------HHHHHHHHHHHHHT-----------TCHHHHHHTTTT-T-TTCHHH---HHHHHHHHHHTTCHHHHH
T ss_pred cCC----------chhHHHHHHHHHHc-----------CcHHHHHHHHHH-H-HhCHhh---HHHHHHHHHHCCCHHHHH
Confidence 921 45677766666443 568899887775 5 466655 446888999999999999
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHH--ccCHHHHHHHHHHHHhhcCC---CCcHHHHHHHHHHHHHhCCHHHHHHHHH
Q 013299 338 YYAKMLLKLEGGSNLKGWLLMARILSA--QKRYEDAETILNAALDQTGK---WEQGELLRTKAKVQLVQGQLKGAVETYT 412 (446)
Q Consensus 338 ~~~~~al~l~P~~~~~~~~~la~~~~~--~g~~~eA~~~~~~al~~~p~---~~~~~~~~~~a~~~~~~g~~~eA~~~~~ 412 (446)
.++++++.++|.+ ...|..+|.++.+ .|+..+++..|...+.+.|- -++...|..+..++...|+++.|+...-
T Consensus 228 ~lLe~aL~le~ah-~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~ 306 (449)
T 1b89_A 228 TMLEAALGLERAH-MGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMM 306 (449)
T ss_dssp HHHHHHTTSTTCC-HHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhCCcHHH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 9999999999999 6999999998866 46788888888766655430 0245678889999999999999987543
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.59 E-value=3.8e-14 Score=134.71 Aligned_cols=176 Identities=13% Similarity=0.061 Sum_probs=129.4
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHH
Q 013299 197 RYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCL 276 (446)
Q Consensus 197 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~ 276 (446)
.+...+..+...|++++|+..+++++ ...|.++..... ...+..
T Consensus 77 ~l~~~i~~~~~~~~y~~a~~~~~~~l--~~~~~~~~~~~~----------------------------------~~~~~~ 120 (293)
T 3u3w_A 77 QFKDQVIMLCKQKRYKEIYNKVWNEL--KKEEYHPEFQQF----------------------------------LQWQYY 120 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH--TTCCCCHHHHHH----------------------------------HHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHh--ccccCChHHHHH----------------------------------HHHHHH
Confidence 34445778888999999999999999 667766542110 001122
Q ss_pred hhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----
Q 013299 277 LGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRD------LSILYRLSLEYAEQRKLNAAHYYAKMLLKL---- 346 (446)
Q Consensus 277 lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~------~~a~~~lg~~~~~~~~~~~A~~~~~~al~l---- 346 (446)
+|.++... +++++|+..|++++ .+.+.. ..+++++|.+|..+|++++|+.+|++++..
T Consensus 121 l~~~~~~~-----------~~~~~Ai~~~~~al-~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 188 (293)
T 3u3w_A 121 VAAYVLKK-----------VDYEYCILELKKLL-NQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL 188 (293)
T ss_dssp HHHHHTTS-----------SCHHHHHHHHHHHH-HTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHcc-----------cCHHHHHHHHHHHH-HHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Confidence 33333221 24566666677666 654332 347899999999999999999999999953
Q ss_pred ---cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCC----CcHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHH
Q 013299 347 ---EGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKW----EQGELLRTKAKVQLVQGQ-LKGAVETYTHLLAAL 418 (446)
Q Consensus 347 ---~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~----~~~~~~~~~a~~~~~~g~-~~eA~~~~~~~l~l~ 418 (446)
.|.. ..++.++|.++..+|+|++|+.++++++++.++. .-..+++++|.++..+|+ +++|++.|++++.+.
T Consensus 189 ~~~~~~~-~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 189 HDNEEFD-VKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp SCCHHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred ccchhHH-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 2222 3588999999999999999999999999876521 127899999999999995 799999999999998
Q ss_pred hhh
Q 013299 419 QVQ 421 (446)
Q Consensus 419 ~~~ 421 (446)
+..
T Consensus 268 ~~~ 270 (293)
T 3u3w_A 268 DIL 270 (293)
T ss_dssp HHT
T ss_pred HHh
Confidence 743
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=1.2e-15 Score=136.27 Aligned_cols=181 Identities=10% Similarity=-0.069 Sum_probs=129.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHH
Q 013299 160 DPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASK 239 (446)
Q Consensus 160 ~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~ 239 (446)
.+....+.+......|+++++.+.++......+..+..+..+|.+++..|++++|+..|++++ .+.|+++.....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al--~~~~~~~~~~~~--- 77 (198)
T 2fbn_A 3 SSHHHHHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEAL--DFFIHTEEWDDQ--- 77 (198)
T ss_dssp -------------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HTTTTCTTCCCH---
T ss_pred CcccccchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHhcccccchh---
Confidence 344556677777788888888888887777777788899999999999999999999999999 888887631100
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHH
Q 013299 240 ICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSI 319 (446)
Q Consensus 240 ~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a 319 (446)
......+.+ ...++..+|.++... +++++|+..+++++ +++|+++.+
T Consensus 78 -----------~~~~~~~~~----------~~~~~~~la~~~~~~-----------~~~~~A~~~~~~al-~~~p~~~~~ 124 (198)
T 2fbn_A 78 -----------ILLDKKKNI----------EISCNLNLATCYNKN-----------KDYPKAIDHASKVL-KIDKNNVKA 124 (198)
T ss_dssp -----------HHHHHHHHH----------HHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHSTTCHHH
T ss_pred -----------hHHHHHHHH----------HHHHHHHHHHHHHHh-----------cCHHHHHHHHHHHH-HhCcccHHH
Confidence 001111111 246788899998664 57899999999999 999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHH-HHHHHHH
Q 013299 320 LYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAE-TILNAAL 379 (446)
Q Consensus 320 ~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~-~~~~~al 379 (446)
++++|.++..+|++++|+..|++++.++|++ ..++..++.++..+++++++. ..+.+.+
T Consensus 125 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 125 LYKLGVANMYFGFLEEAKENLYKAASLNPNN-LDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999 599999999999999888876 3344433
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=3.4e-14 Score=116.15 Aligned_cols=120 Identities=13% Similarity=0.029 Sum_probs=111.2
Q ss_pred hhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 013299 270 ESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG 349 (446)
Q Consensus 270 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~ 349 (446)
...+++.+|.++... +++++|+..|++++ ..+|+++.+++.+|.++...|++++|+..+++++.++|+
T Consensus 11 ~~~~~~~~~~~~~~~-----------~~~~~A~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 78 (131)
T 2vyi_A 11 EAERLKTEGNEQMKV-----------ENFEAAVHFYGKAI-ELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA 78 (131)
T ss_dssp HHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHHHHHHHHc-----------cCHHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc
Confidence 356778888887654 57899999999999 999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCH
Q 013299 350 SNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQL 404 (446)
Q Consensus 350 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~ 404 (446)
+ ..+|..+|.++..+|++++|+.+++++++.+| ++..++..+|.++...|++
T Consensus 79 ~-~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 79 Y-SKAYGRMGLALSSLNKHVEAVAYYKKALELDP--DNETYKSNLKIAELKLREA 130 (131)
T ss_dssp C-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHHTTC
T ss_pred C-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCc--cchHHHHHHHHHHHHHhcC
Confidence 9 59999999999999999999999999999999 8999999999999998875
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=9.1e-15 Score=120.23 Aligned_cols=101 Identities=17% Similarity=0.024 Sum_probs=88.9
Q ss_pred HHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCH
Q 013299 273 ANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNL 352 (446)
Q Consensus 273 a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~ 352 (446)
.++.+|.++... |++++|+..|++++ +++|+++.+|+.+|.++..+|++++|+..|+++++++|++ .
T Consensus 19 ~~~~~g~~~~~~-----------g~~~~A~~~~~~al-~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~-~ 85 (121)
T 1hxi_A 19 NPMEEGLSMLKL-----------ANLAEAALAFEAVC-QKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD-I 85 (121)
T ss_dssp CHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-H
T ss_pred hHHHHHHHHHHc-----------CCHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-H
Confidence 456777777554 57899999999999 9999999999999999999999999999999999999999 5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcH
Q 013299 353 KGWLLMARILSAQKRYEDAETILNAALDQTGKWEQG 388 (446)
Q Consensus 353 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 388 (446)
.+|..+|.++..+|++++|+.+++++++.+| ++.
T Consensus 86 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~P--~~~ 119 (121)
T 1hxi_A 86 AVHAALAVSHTNEHNANAALASLRAWLLSQP--QYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--CCC
Confidence 9999999999999999999999999999999 554
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.57 E-value=8.8e-15 Score=124.93 Aligned_cols=104 Identities=15% Similarity=0.025 Sum_probs=94.0
Q ss_pred hHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCC-------CHH-----HHHHHHHHHHHcCCHHHHHH
Q 013299 271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMR-------DLS-----ILYRLSLEYAEQRKLNAAHY 338 (446)
Q Consensus 271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~-------~~~-----a~~~lg~~~~~~~~~~~A~~ 338 (446)
+..+...|..+... |++++|+..|++|+ +++|+ +.. +|+++|.++..+|++++|+.
T Consensus 11 a~~~~~~G~~l~~~-----------g~~eeAi~~Y~kAL-~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~ 78 (159)
T 2hr2_A 11 AYLALSDAQRQLVA-----------GEYDEAAANCRRAM-EISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALH 78 (159)
T ss_dssp HHHHHHHHHHHHHH-----------TCHHHHHHHHHHHH-HHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHC-----------CCHHHHHHHHHHHH-hhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHH
Confidence 45677788887654 67999999999999 99999 544 99999999999999999999
Q ss_pred HHHHHHhh-------cCCCCHHHH----HHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHH
Q 013299 339 YAKMLLKL-------EGGSNLKGW----LLMARILSAQKRYEDAETILNAALDQTGKWEQGE 389 (446)
Q Consensus 339 ~~~~al~l-------~P~~~~~~~----~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~ 389 (446)
.|++|+++ +|++ ..+| +++|.++..+|++++|+..|+++++++| ++..
T Consensus 79 ~~~kAL~l~n~~~e~~pd~-~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p--~d~~ 137 (159)
T 2hr2_A 79 SADKALHYFNRRGELNQDE-GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE--ERKG 137 (159)
T ss_dssp HHHHHHHHHHHHCCTTSTH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--HCCS
T ss_pred HHHHHHHhhhccccCCCch-HHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCC--CcHH
Confidence 99999999 9999 5999 9999999999999999999999999999 5543
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.7e-14 Score=126.07 Aligned_cols=126 Identities=15% Similarity=0.112 Sum_probs=106.5
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHH
Q 013299 244 YPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRL 323 (446)
Q Consensus 244 ~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~l 323 (446)
..|++++|+..++++++..|.+ ..+++.+|.++... |++++|+..|++++ +++|+++.+++.+
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~~~-----------~~~~~A~~~~~~al-~~~p~~~~~~~~l 84 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQN-----SEQWALLGEYYLWQ-----------NDYSNSLLAYRQAL-QLRGENAELYAAL 84 (177)
T ss_dssp -----CCCCHHHHHHHHHCCSC-----HHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHHCSCHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-HcCCCCHHHHHHH
Confidence 3567788888888888854433 56788888888654 56899999999999 9999999999999
Q ss_pred HHH-HHHcCCH--HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHH
Q 013299 324 SLE-YAEQRKL--NAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGE 389 (446)
Q Consensus 324 g~~-~~~~~~~--~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~ 389 (446)
|.+ +...|++ ++|+..|++++.++|++ ..+|..+|.++..+|++++|+.+++++++.+| ++..
T Consensus 85 a~~l~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~ 150 (177)
T 2e2e_A 85 ATVLYYQASQHMTAQTRAMIDKALALDSNE-ITALMLLASDAFMQANYAQAIELWQKVMDLNS--PRIN 150 (177)
T ss_dssp HHHHHHHTTTCCCHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC--TTSC
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC--CCcc
Confidence 999 7789998 99999999999999999 59999999999999999999999999999999 5544
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.57 E-value=9.5e-14 Score=131.92 Aligned_cols=177 Identities=7% Similarity=-0.049 Sum_probs=134.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcH------HHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCCh
Q 013299 158 EWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRK------ERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCL 231 (446)
Q Consensus 158 p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~------~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~ 231 (446)
|.....+...+..+...|++++|++.|+++++..|... ..++.+|.++...|++++|+..|++++ ...++..
T Consensus 72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al--~~~~~~~ 149 (293)
T 2qfc_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLL--NQQLTGI 149 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH--TTCCCSS
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH--HHHhcCC
Confidence 44556677888999999999999999999999887765 346778889999999999999999999 6655431
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHh
Q 013299 232 PALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARS 311 (446)
Q Consensus 232 ~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~ 311 (446)
... ....+++.+|.+|..+ |++++|+.+|++++ +
T Consensus 150 ~~~----------------------------------~~~~~~~~lg~~y~~~-----------~~~~~A~~~~~kal-~ 183 (293)
T 2qfc_A 150 DVY----------------------------------QNLYIENAIANIYAEN-----------GYLKKGIDLFEQIL-K 183 (293)
T ss_dssp CTT----------------------------------HHHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-H
T ss_pred chH----------------------------------HHHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-H
Confidence 100 0123455566666443 34666666666666 4
Q ss_pred h---CCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC-----CHHHHHHHHHHHHHccCHHHH-HHHHHHH
Q 013299 312 T---NMRDL----SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS-----NLKGWLLMARILSAQKRYEDA-ETILNAA 378 (446)
Q Consensus 312 ~---~P~~~----~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~-----~~~~~~~la~~~~~~g~~~eA-~~~~~~a 378 (446)
+ .|++. .+++++|.+|..+|++++|+.++++++.+.++. -..++.++|.++..+|++++| ..++++|
T Consensus 184 ~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 184 QLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 3 34433 688999999999999999999999999887541 037899999999999999999 7889999
Q ss_pred Hhhc
Q 013299 379 LDQT 382 (446)
Q Consensus 379 l~~~ 382 (446)
+.+.
T Consensus 264 l~~~ 267 (293)
T 2qfc_A 264 SFFF 267 (293)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.57 E-value=2e-16 Score=160.58 Aligned_cols=165 Identities=12% Similarity=0.039 Sum_probs=118.7
Q ss_pred CCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHH
Q 013299 175 GDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATF 254 (446)
Q Consensus 175 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~ 254 (446)
+++++|++.|++++..+|+.+.+|+++|.+++..|+|++|+..|++++ .++|++... . .++..
T Consensus 248 ~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al--~~~p~~~~~------------~-~~~~~-- 310 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIV--SWLEMEYGL------------S-EKESK-- 310 (457)
T ss_dssp EEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHHTTCCSC------------C-HHHHH--
T ss_pred hhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH--HHhcccccC------------C-hHHHH--
Confidence 455667777777777777777777777877777777888888887777 677766431 0 00000
Q ss_pred HHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 013299 255 ASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLN 334 (446)
Q Consensus 255 ~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~ 334 (446)
.+. .....+++++|.||... +++++|+.+|++++ +++|+++.+++++|.+|..+|+++
T Consensus 311 ---~~~-------~~~~~~~~nla~~~~~~-----------g~~~~A~~~~~~al-~~~p~~~~a~~~~g~a~~~~g~~~ 368 (457)
T 1kt0_A 311 ---ASE-------SFLLAAFLNLAMCYLKL-----------REYTKAVECCDKAL-GLDSANEKGLYRRGEAQLLMNEFE 368 (457)
T ss_dssp ---HHH-------HHHHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHSTTCHHHHHHHHHHHHHTTCHH
T ss_pred ---HHH-------HHHHHHHHHHHHHHHHh-----------cCHHHHHHHHHHHH-hcCCccHHHHHHHHHHHHHccCHH
Confidence 000 12356788888888654 56889999999999 899999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHH-HHHHH
Q 013299 335 AAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETI-LNAAL 379 (446)
Q Consensus 335 ~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~-~~~al 379 (446)
+|+..|++|++++|++. .++..++.++..+|++++|... +.+.+
T Consensus 369 ~A~~~~~~al~l~P~~~-~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 369 SAKGDFEKVLEVNPQNK-AARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999884 8888999999988888887743 44443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.57 E-value=9.6e-14 Score=118.94 Aligned_cols=133 Identities=15% Similarity=0.059 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHH
Q 013299 195 KERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTAN 274 (446)
Q Consensus 195 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~ 274 (446)
+..|+.+|.++...|++++|+..|++++ ..+|+++.++..+|
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al--~~~~~~~~~~~~~a------------------------------------ 54 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAI--ELNPSNAIYYGNRS------------------------------------ 54 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHSTTCHHHHHHHH------------------------------------
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHH--HhCCCChHHHHHHH------------------------------------
Confidence 4567777777777777777777777777 66776655444333
Q ss_pred HHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHH
Q 013299 275 CLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKG 354 (446)
Q Consensus 275 ~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~ 354 (446)
.++.. .|++++|+..|++++ +++|+++.+++.+|.++..+|++++|+..|++++.++|++ ..+
T Consensus 55 ----~~~~~-----------~~~~~~A~~~~~~a~-~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~ 117 (166)
T 1a17_A 55 ----LAYLR-----------TECYGYALGDATRAI-ELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD-KDA 117 (166)
T ss_dssp ----HHHHH-----------TTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHH
T ss_pred ----HHHHH-----------cCCHHHHHHHHHHHH-HhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC-HHH
Confidence 33322 235678888888888 8888888999999999999999999999999999999988 477
Q ss_pred HHHHHHH--HHHccCHHHHHHHHHHHHhhc
Q 013299 355 WLLMARI--LSAQKRYEDAETILNAALDQT 382 (446)
Q Consensus 355 ~~~la~~--~~~~g~~~eA~~~~~~al~~~ 382 (446)
+..++.+ +..+|++++|+..++++....
T Consensus 118 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 147 (166)
T 1a17_A 118 KMKYQECNKIVKQKAFERAIAGDEHKRSVV 147 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccchHHHh
Confidence 7554444 778889999998888876553
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.4e-14 Score=123.41 Aligned_cols=117 Identities=20% Similarity=0.140 Sum_probs=102.8
Q ss_pred hHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhh------------------CCCCHHHHHHHHHHHHHcCC
Q 013299 271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARST------------------NMRDLSILYRLSLEYAEQRK 332 (446)
Q Consensus 271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~------------------~P~~~~a~~~lg~~~~~~~~ 332 (446)
+..+...|..+... |++++|+..|++++ .+ +|.++.+++++|.++..+|+
T Consensus 11 a~~~~~~G~~~~~~-----------~~~~~A~~~y~~al-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~ 78 (162)
T 3rkv_A 11 VEALRQKGNELFVQ-----------KDYKEAIDAYRDAL-TRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGD 78 (162)
T ss_dssp HHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-HHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 55677788888664 57899999999999 99 77888999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcH-HHHHHHHHHHHHhC
Q 013299 333 LNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQG-ELLRTKAKVQLVQG 402 (446)
Q Consensus 333 ~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~-~~~~~~a~~~~~~g 402 (446)
+++|+..+++++.++|++ ..+|+.+|.++..+|++++|+..|+++++++| ++. .+...++.+....+
T Consensus 79 ~~~A~~~~~~al~~~p~~-~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p--~~~~~~~~~l~~~~~~~~ 146 (162)
T 3rkv_A 79 LHEAEETSSEVLKREETN-EKALFRRAKARIAAWKLDEAEEDLKLLLRNHP--AAASVVAREMKIVTERRA 146 (162)
T ss_dssp HHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCG--GGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcc-hHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHHH
Confidence 999999999999999999 59999999999999999999999999999999 777 55666666554443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.55 E-value=5.1e-14 Score=117.11 Aligned_cols=116 Identities=16% Similarity=0.113 Sum_probs=103.6
Q ss_pred hHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Q 013299 271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS 350 (446)
Q Consensus 271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~ 350 (446)
+..++.+|.++... |++++|+..|++++ .++|+++.+++++|.++..+|++++|+..|++++.++|++
T Consensus 9 ~~~~~~~g~~~~~~-----------~~~~~A~~~~~~al-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 76 (137)
T 3q49_B 9 AQELKEQGNRLFVG-----------RKYPEAAACYGRAI-TRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS 76 (137)
T ss_dssp HHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHh-----------CcHHHHHHHHHHHH-hhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh
Confidence 67888999988664 57899999999999 9999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCC-----cHHHHHHHHHHHHHh
Q 013299 351 NLKGWLLMARILSAQKRYEDAETILNAALDQTGKWE-----QGELLRTKAKVQLVQ 401 (446)
Q Consensus 351 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~-----~~~~~~~~a~~~~~~ 401 (446)
..+|..+|.++..+|++++|+.+++++++..| + +..+...+..+....
T Consensus 77 -~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~l~~~~~~~ 129 (137)
T 3q49_B 77 -VKAHFFLGQCQLEMESYDEAIANLQRAYSLAK--EQRLNFGDDIPSALRIAKKKR 129 (137)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--HTTCCCTTHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHCh--hHHHHHHHHHHHHHHHHHHHH
Confidence 59999999999999999999999999999998 5 556665555554443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.1e-14 Score=115.80 Aligned_cols=106 Identities=14% Similarity=0.115 Sum_probs=101.1
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCC--cHH
Q 013299 312 TNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWE--QGE 389 (446)
Q Consensus 312 ~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~--~~~ 389 (446)
++|+++.+++.+|.++...|++++|+..|++++.++|++ ..+|..+|.++..+|++++|+.+++++++..| + +..
T Consensus 1 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~ 77 (112)
T 2kck_A 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEE-SKYWLMKGKALYNLERYEEAVDCYNYVINVIE--DEYNKD 77 (112)
T ss_dssp CCCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSC--CTTCHH
T ss_pred CCCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc--ccchHH
Confidence 479999999999999999999999999999999999999 59999999999999999999999999999999 8 899
Q ss_pred HHHHHHHHHHHh-CCHHHHHHHHHHHHHHHhh
Q 013299 390 LLRTKAKVQLVQ-GQLKGAVETYTHLLAALQV 420 (446)
Q Consensus 390 ~~~~~a~~~~~~-g~~~eA~~~~~~~l~l~~~ 420 (446)
+++.+|.++... |++++|++.+++++...|.
T Consensus 78 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 78 VWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 999999999999 9999999999999988764
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.54 E-value=2.7e-13 Score=109.67 Aligned_cols=117 Identities=20% Similarity=0.241 Sum_probs=106.1
Q ss_pred hHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Q 013299 271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS 350 (446)
Q Consensus 271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~ 350 (446)
..+++.+|.++... +++++|+..|++++ ..+|+++.+++.+|.++...|++++|+..+++++.++|++
T Consensus 9 ~~~~~~~~~~~~~~-----------~~~~~A~~~~~~~~-~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 76 (125)
T 1na0_A 9 AEAWYNLGNAYYKQ-----------GDYDEAIEYYQKAL-ELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 76 (125)
T ss_dssp HHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-HHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc
Confidence 56778888887554 56899999999999 9999999999999999999999999999999999999998
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhC
Q 013299 351 NLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQG 402 (446)
Q Consensus 351 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g 402 (446)
..+|..+|.++...|++++|+.+++++++.+| ++..++..++.++...|
T Consensus 77 -~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 77 -AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--NNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHhcc
Confidence 59999999999999999999999999999999 88999999999887765
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=8.2e-14 Score=114.55 Aligned_cols=108 Identities=11% Similarity=-0.069 Sum_probs=102.7
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHH
Q 013299 311 STNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGEL 390 (446)
Q Consensus 311 ~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 390 (446)
...|.++.+++.+|.++...|++++|+..|++++.++|++ ..+|..+|.++..+|++++|+.+++++++.+| ++..+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~ 86 (133)
T 2lni_A 10 HMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD-AKLYSNRAACYTKLLEFQLALKDCEECIQLEP--TFIKG 86 (133)
T ss_dssp CSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTC-HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT--TCHHH
T ss_pred CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--CchHH
Confidence 3568889999999999999999999999999999999999 59999999999999999999999999999999 89999
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHhhh
Q 013299 391 LRTKAKVQLVQGQLKGAVETYTHLLAALQVQ 421 (446)
Q Consensus 391 ~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~ 421 (446)
++.+|.++...|++++|+..|++++++.|.+
T Consensus 87 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 117 (133)
T 2lni_A 87 YTRKAAALEAMKDYTKAMDVYQKALDLDSSC 117 (133)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhCCCc
Confidence 9999999999999999999999999997654
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.54 E-value=7.3e-14 Score=120.39 Aligned_cols=104 Identities=16% Similarity=0.111 Sum_probs=98.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------------------cCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 013299 316 DLSILYRLSLEYAEQRKLNAAHYYAKMLLKL------------------EGGSNLKGWLLMARILSAQKRYEDAETILNA 377 (446)
Q Consensus 316 ~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l------------------~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~ 377 (446)
.+..+..+|..+...|++++|+..|++++.+ +|.+ ..+|.++|.++..+|+|++|+..+++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~nla~~~~~~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKN-IPLYANMSQCYLNIGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTH-HHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHH-HHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 3567889999999999999999999999999 7887 58999999999999999999999999
Q ss_pred HHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhh
Q 013299 378 ALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQT 422 (446)
Q Consensus 378 al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~ 422 (446)
+++++| +++.+++.+|.++..+|++++|+..|++++++.|++.
T Consensus 89 al~~~p--~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 89 VLKREE--TNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHHHST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHhcCC--cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 999999 8999999999999999999999999999999998765
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.54 E-value=5e-15 Score=120.66 Aligned_cols=96 Identities=15% Similarity=0.072 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHH
Q 013299 295 ATRQAKALQALVSAARST---NMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDA 371 (446)
Q Consensus 295 ~~~~~eAl~~~~~al~~~---~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA 371 (446)
.|++++|+..|++++ ++ +|+++.+++++|.++..+|++++|+..|+++++++|++ ..++.++|.++..+|++++|
T Consensus 3 ~g~~~~A~~~~~~al-~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAI-ASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH-QALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHHH-SSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCHHHH
T ss_pred CCcHHHHHHHHHHHH-HcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-hHHHHHHHHHHHHcCCHHHH
Confidence 467899999999999 99 69999999999999999999999999999999999999 59999999999999999999
Q ss_pred HHHHHHHHhhcCCCCcHHHHHHH
Q 013299 372 ETILNAALDQTGKWEQGELLRTK 394 (446)
Q Consensus 372 ~~~~~~al~~~p~~~~~~~~~~~ 394 (446)
+.+++++++..| +++.+....
T Consensus 81 ~~~~~~al~~~p--~~~~~~~~~ 101 (117)
T 3k9i_A 81 VELLLKIIAETS--DDETIQSYK 101 (117)
T ss_dssp HHHHHHHHHHHC--CCHHHHHTH
T ss_pred HHHHHHHHHhCC--CcHHHHHHH
Confidence 999999999999 777765443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=2.5e-13 Score=108.83 Aligned_cols=113 Identities=17% Similarity=0.113 Sum_probs=101.9
Q ss_pred hHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Q 013299 271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS 350 (446)
Q Consensus 271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~ 350 (446)
+..++.+|.++... |++++|+..|++++ ..+|+++.+++.+|.++...|++++|+..+++++.++|++
T Consensus 4 ~~~~~~~~~~~~~~-----------~~~~~A~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 71 (118)
T 1elw_A 4 VNELKEKGNKALSV-----------GNIDDALQCYSEAI-KLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW 71 (118)
T ss_dssp HHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHc-----------ccHHHHHHHHHHHH-HHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCccc
Confidence 45677788877554 57899999999999 9999999999999999999999999999999999999998
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHH
Q 013299 351 NLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQ 398 (446)
Q Consensus 351 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~ 398 (446)
..++..+|.++..+|++++|+.+++++++.+| ++..++..++.+.
T Consensus 72 -~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~ 116 (118)
T 1elw_A 72 -GKGYSRKAAALEFLNRFEEAKRTYEEGLKHEA--NNPQLKEGLQNME 116 (118)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT--TCHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC--CCHHHHHHHHHhh
Confidence 59999999999999999999999999999999 8888888887764
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.53 E-value=7.9e-15 Score=148.76 Aligned_cols=152 Identities=12% Similarity=0.024 Sum_probs=122.7
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCC--------
Q 013299 245 PDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRD-------- 316 (446)
Q Consensus 245 ~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~-------- 316 (446)
.+++++|+..++++++..+ ..+.++..+|.++... +++++|+..|++|+ +++|++
T Consensus 247 l~~~~~A~~~~~~~~~~~~-----~~a~~~~~~G~~~~~~-----------g~~~~A~~~y~~Al-~~~p~~~~~~~~~~ 309 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKEKL-----EQAAIVKEKGTVYFKG-----------GKYMQAVIQYGKIV-SWLEMEYGLSEKES 309 (457)
T ss_dssp EEEEECCCCGGGSCHHHHH-----HHHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHHTTCCSCCHHHH
T ss_pred hhhcccCcchhhcCHHHHH-----HHHHHHHHHHHHHHhC-----------CCHHHHHHHHHHHH-HHhcccccCChHHH
Confidence 3445566666665555322 1356777788877654 56788888888888 888888
Q ss_pred -------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHH
Q 013299 317 -------LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGE 389 (446)
Q Consensus 317 -------~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~ 389 (446)
..+++++|.++..+|++++|+.+|++++.++|++ ..+|+++|.++..+|+|++|+..|+++++++| ++..
T Consensus 310 ~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P--~~~~ 386 (457)
T 1kt0_A 310 KASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSAN-EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP--QNKA 386 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------C
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CCHH
Confidence 7999999999999999999999999999999999 59999999999999999999999999999999 8999
Q ss_pred HHHHHHHHHHHhCCHHHHHH-HHHHHHH
Q 013299 390 LLRTKAKVQLVQGQLKGAVE-TYTHLLA 416 (446)
Q Consensus 390 ~~~~~a~~~~~~g~~~eA~~-~~~~~l~ 416 (446)
++..++.++..+|++++|.. .|++.+.
T Consensus 387 a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 387 ARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999998875 3454443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.52 E-value=3.4e-15 Score=152.26 Aligned_cols=138 Identities=12% Similarity=0.006 Sum_probs=119.7
Q ss_pred hHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Q 013299 271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS 350 (446)
Q Consensus 271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~ 350 (446)
+.++..+|.++... |++++|+..|++++ +++|+++.+++++|.++..+|++++|+..|++|++++|++
T Consensus 6 a~~~~~lg~~~~~~-----------g~~~~A~~~~~~Al-~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 73 (477)
T 1wao_1 6 AEELKTQANDYFKA-----------KDYENAIKFYSQAI-ELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY 73 (477)
T ss_dssp HTTSSSSSSSTTTT-----------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHHh-----------CCHHHHHHHHHHHH-HhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence 34566677777654 57899999999999 9999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHH--HHHhCCHHHHHHHHH-----------HHHHH
Q 013299 351 NLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKV--QLVQGQLKGAVETYT-----------HLLAA 417 (446)
Q Consensus 351 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~--~~~~g~~~eA~~~~~-----------~~l~l 417 (446)
..+|.++|.++..+|++++|+..++++++.+| ++..++..++.+ +..+|++++|++.++ +++++
T Consensus 74 -~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~ 150 (477)
T 1wao_1 74 -IKGYYRRAASNMALGKFRAALRDYETVVKVKP--HDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTI 150 (477)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST--TCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCC
T ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccc
Confidence 59999999999999999999999999999999 888889989888 899999999999999 77776
Q ss_pred Hhhhhh
Q 013299 418 LQVQTK 423 (446)
Q Consensus 418 ~~~~~~ 423 (446)
.|....
T Consensus 151 ~~~~~~ 156 (477)
T 1wao_1 151 EDEYSG 156 (477)
T ss_dssp CTTCCS
T ss_pred cccccc
Confidence 665433
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=1.9e-13 Score=109.59 Aligned_cols=114 Identities=12% Similarity=0.000 Sum_probs=103.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHH
Q 013299 316 DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKA 395 (446)
Q Consensus 316 ~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a 395 (446)
.+.+++.+|.++...|++++|+..|++++..+|++ ..+|..+|.++..+|++++|+.+++++++..| +++.+++.+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a 79 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHN-HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP--DWGKGYSRKA 79 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc--ccHHHHHHHH
Confidence 46789999999999999999999999999999999 59999999999999999999999999999999 8999999999
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHhhhhhhccCCcchhhHHhhhhccc
Q 013299 396 KVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKVYFMRKRVS 442 (446)
Q Consensus 396 ~~~~~~g~~~eA~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (446)
.++...|++++|+..|++++++.| ....+++..+++.
T Consensus 80 ~~~~~~~~~~~A~~~~~~~~~~~~----------~~~~~~~~l~~~~ 116 (118)
T 1elw_A 80 AALEFLNRFEEAKRTYEEGLKHEA----------NNPQLKEGLQNME 116 (118)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCT----------TCHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHcCC----------CCHHHHHHHHHhh
Confidence 999999999999999999999864 4445555555543
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.51 E-value=4.3e-13 Score=108.50 Aligned_cols=107 Identities=20% Similarity=0.264 Sum_probs=97.8
Q ss_pred hhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHH
Q 013299 311 STNMRD-LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGE 389 (446)
Q Consensus 311 ~~~P~~-~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~ 389 (446)
..+|.+ +.+++.+|.++...|++++|+..|++++..+|++ ..+|..+|.++...|++++|+.+++++++..| ++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~ 78 (125)
T 1na0_A 2 AMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--NNAE 78 (125)
T ss_dssp -----CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHH
T ss_pred CCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC--ccHH
Confidence 467777 8899999999999999999999999999999998 59999999999999999999999999999999 8999
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Q 013299 390 LLRTKAKVQLVQGQLKGAVETYTHLLAALQV 420 (446)
Q Consensus 390 ~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~ 420 (446)
+++.+|.++...|++++|+..|++++++.|.
T Consensus 79 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 109 (125)
T 1na0_A 79 AWYNLGNAYYKQGDYDEAIEYYQKALELDPN 109 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999998743
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.51 E-value=4.1e-13 Score=127.47 Aligned_cols=169 Identities=10% Similarity=0.002 Sum_probs=118.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhCCCCCCcHH------HHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCCh------HH
Q 013299 166 HLSFAFSIAGDLSSLATQIEELLPGIINRKE------RYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCL------PA 233 (446)
Q Consensus 166 ~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~------~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~------~a 233 (446)
.....+...|++++|+..|++++...+..++ .++.+|.++...|++++|+..|++++ .+.++.. .+
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al--~~~~~~~~~~~~~~~ 157 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLL--NQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH--HTCCCCSCTTHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHH--HHhcccccHHHHHHH
Confidence 3467788999999999999999998887776 33458999999999999999999999 5544322 24
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhC
Q 013299 234 LLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTN 313 (446)
Q Consensus 234 ~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~ 313 (446)
+..+|.+ +...|++++|+.+|+++++..... - ...
T Consensus 158 ~~~lg~~-y~~~g~~~~A~~~~~~al~~~~~~-------------------------------------------~-~~~ 192 (293)
T 3u3w_A 158 ENAIANI-YAENGYLKKGIDLFEQILKQLEAL-------------------------------------------H-DNE 192 (293)
T ss_dssp HHHHHHH-HHHTTCHHHHHHHHHHHHHHHHHS-------------------------------------------S-CCH
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHHHHhc-------------------------------------------c-cch
Confidence 5666655 455789999999999998742110 0 111
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC-----HHHHHHHHHHHHHccC-HHHHHHHHHHHHhh
Q 013299 314 MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN-----LKGWLLMARILSAQKR-YEDAETILNAALDQ 381 (446)
Q Consensus 314 P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~-----~~~~~~la~~~~~~g~-~~eA~~~~~~al~~ 381 (446)
|..+.+++++|.+|..+|++++|+.++++++.+.++.. +.++.++|.++..+|+ +++|+.+|++|+.+
T Consensus 193 ~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 193 EFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 22245666777777777777777777777776654320 2567777777777773 57777777777654
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=1.6e-13 Score=111.98 Aligned_cols=108 Identities=13% Similarity=-0.011 Sum_probs=102.1
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHH
Q 013299 311 STNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGEL 390 (446)
Q Consensus 311 ~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 390 (446)
+.+|+++.+++.+|.++...|++++|+..|++++.++|++ ..+|..+|.++..+|++++|+.+++++++..| ++..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~ 82 (131)
T 2vyi_A 6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN-AVYFCNRAAAYSKLGNYAGAVQDCERAICIDP--AYSKA 82 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHH
T ss_pred hcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc--cCHHH
Confidence 4567888999999999999999999999999999999999 59999999999999999999999999999999 89999
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHhhh
Q 013299 391 LRTKAKVQLVQGQLKGAVETYTHLLAALQVQ 421 (446)
Q Consensus 391 ~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~ 421 (446)
++.+|.++...|++++|+..|++++++.|++
T Consensus 83 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 113 (131)
T 2vyi_A 83 YGRMGLALSSLNKHVEAVAYYKKALELDPDN 113 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCccc
Confidence 9999999999999999999999999997644
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.5e-13 Score=111.61 Aligned_cols=116 Identities=14% Similarity=0.095 Sum_probs=91.8
Q ss_pred HHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 013299 273 ANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDL---SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG 349 (446)
Q Consensus 273 a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~---~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~ 349 (446)
+++.+|.++... |++++|+..|++++ +.+|+++ .+++.+|.++..+|++++|+..|++++..+|+
T Consensus 4 ~~~~~a~~~~~~-----------~~~~~A~~~~~~~~-~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~ 71 (129)
T 2xev_A 4 TAYNVAFDALKN-----------GKYDDASQLFLSFL-ELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT 71 (129)
T ss_dssp CHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHh-----------CCHHHHHHHHHHHH-HHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 455666666543 56888999999999 8888888 78888999998899999999999999988888
Q ss_pred C---CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCC
Q 013299 350 S---NLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQ 403 (446)
Q Consensus 350 ~---~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~ 403 (446)
+ + .+++.+|.++..+|++++|+.++++++..+| ++..+...+..+....++
T Consensus 72 ~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~a~~~l~~l~~~ 125 (129)
T 2xev_A 72 HDKAA-GGLLKLGLSQYGEGKNTEAQQTLQQVATQYP--GSDAARVAQERLQSIRLG 125 (129)
T ss_dssp STTHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TSHHHHHHHHHHHHHC--
T ss_pred CcccH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC--CChHHHHHHHHHHHHHhh
Confidence 7 5 7788889999999999999999999988888 777766665555544443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.3e-13 Score=113.18 Aligned_cols=108 Identities=16% Similarity=0.078 Sum_probs=100.4
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCc
Q 013299 311 STNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS---NLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQ 387 (446)
Q Consensus 311 ~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~---~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~ 387 (446)
..+|+++..++.+|..+...|++++|+..|++++.++|++ . .+|..+|.++..+|++++|+.+++++++.+| ++
T Consensus 22 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~ 98 (148)
T 2dba_A 22 TPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQA-VLHRNRAACHLKLEDYDKAETEASKAIEKDG--GD 98 (148)
T ss_dssp CTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS--CC
T ss_pred ccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHH-HHHHHHHHHHHHHccHHHHHHHHHHHHhhCc--cC
Confidence 5678999999999999999999999999999999999986 4 8899999999999999999999999999999 88
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhh
Q 013299 388 GELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQ 421 (446)
Q Consensus 388 ~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~ 421 (446)
..+++.+|.++..+|++++|+..|++++++.|++
T Consensus 99 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 132 (148)
T 2dba_A 99 VKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKN 132 (148)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 9999999999999999999999999999997543
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.6e-13 Score=111.51 Aligned_cols=105 Identities=12% Similarity=0.103 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCH--HHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCc---HHHH
Q 013299 317 LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNL--KGWLLMARILSAQKRYEDAETILNAALDQTGKWEQ---GELL 391 (446)
Q Consensus 317 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~--~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~---~~~~ 391 (446)
+.+++.+|.++...|++++|+..|++++..+|+++. .+++.+|.++..+|++++|+.+++++++.+| ++ +.++
T Consensus 2 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~~ 79 (129)
T 2xev_A 2 ARTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYP--THDKAAGGL 79 (129)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TSTTHHHHH
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCC--CCcccHHHH
Confidence 346889999999999999999999999999999831 6999999999999999999999999999999 77 8999
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhh
Q 013299 392 RTKAKVQLVQGQLKGAVETYTHLLAALQVQTK 423 (446)
Q Consensus 392 ~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~ 423 (446)
+.+|.++..+|++++|+..|+++++..|+...
T Consensus 80 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 111 (129)
T 2xev_A 80 LKLGLSQYGEGKNTEAQQTLQQVATQYPGSDA 111 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCChH
Confidence 99999999999999999999999999875543
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.6e-14 Score=140.62 Aligned_cols=154 Identities=9% Similarity=0.032 Sum_probs=90.9
Q ss_pred CCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhh
Q 013299 192 INRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMES 271 (446)
Q Consensus 192 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~ 271 (446)
+.....|+.+|.+++..|+|++|+..|++++ .++|++.. +...++.+++...+ ..
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al--~~~p~~~~---------~~~~~~~~~~~~~l--------------~~ 230 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAI--AYMGDDFM---------FQLYGKYQDMALAV--------------KN 230 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHH--HHSCHHHH---------HTCCHHHHHHHHHH--------------HT
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH--HHhccchh---------hhhcccHHHHHHHH--------------HH
Confidence 4456778999999999999999999999999 78887642 22334444443322 12
Q ss_pred HHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Q 013299 272 TANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN 351 (446)
Q Consensus 272 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~ 351 (446)
.+++++|.+|... +++++|+..|++++ +++|+++.+++++|.++..+|++++|+..|+++++++|+++
T Consensus 231 ~~~~nla~~~~~~-----------g~~~~A~~~~~~al-~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~ 298 (338)
T 2if4_A 231 PCHLNIAACLIKL-----------KRYDEAIGHCNIVL-TEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDK 298 (338)
T ss_dssp HHHHHHHHHHHTT-----------TCCHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------
T ss_pred HHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCH
Confidence 4778888888664 46788888888888 88888888888888888888888888888888888888884
Q ss_pred HHHHHHHHHHH-HHccCHHHHHHHHHHHHhhcC
Q 013299 352 LKGWLLMARIL-SAQKRYEDAETILNAALDQTG 383 (446)
Q Consensus 352 ~~~~~~la~~~-~~~g~~~eA~~~~~~al~~~p 383 (446)
.++..++.+. ...+..+++...|.+++...|
T Consensus 299 -~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p 330 (338)
T 2if4_A 299 -AIRRELRALAEQEKALYQKQKEMYKGIFKGKD 330 (338)
T ss_dssp ---------------------------------
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 8888888874 445667788888888888888
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.3e-13 Score=120.75 Aligned_cols=161 Identities=11% Similarity=-0.009 Sum_probs=116.4
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHh------hCCCCHH
Q 013299 245 PDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARS------TNMRDLS 318 (446)
Q Consensus 245 ~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~------~~P~~~~ 318 (446)
.|++++|...++.+.. .+. ....++..+|.++... |++++|+..|++++ + ..|..+.
T Consensus 5 ~g~~~~A~~~~~~~~~-~~~----~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~al-~~~~~~~~~~~~~~ 67 (203)
T 3gw4_A 5 AHDYALAERQAQALLA-HPA----TASGARFMLGYVYAFM-----------DRFDEARASFQALQ-QQAQKSGDHTAEHR 67 (203)
T ss_dssp --CHHHHHHHHHHHHT-STT----THHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHHHTTCCHHHHHH
T ss_pred cccHHHHHHHHHHhcC-ChH----HHHHHHHHHHHHHHHh-----------CcHHHHHHHHHHHH-HHHHHcCCcHHHHH
Confidence 3556666654333322 111 1245666666666543 45677777777777 6 4455677
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh---cCCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCc----H
Q 013299 319 ILYRLSLEYAEQRKLNAAHYYAKMLLKL---EGGS---NLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQ----G 388 (446)
Q Consensus 319 a~~~lg~~~~~~~~~~~A~~~~~~al~l---~P~~---~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~----~ 388 (446)
+++++|.++..+|++++|+.++++++.+ .|++ ...++.++|.++..+|++++|+.++++++...+..++ .
T Consensus 68 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 147 (203)
T 3gw4_A 68 ALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIA 147 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHH
Confidence 8899999999999999999999999998 3422 1357889999999999999999999999976431122 3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhh
Q 013299 389 ELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQT 422 (446)
Q Consensus 389 ~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~ 422 (446)
.++.++|.++...|++++|+..+++++++.+...
T Consensus 148 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 181 (203)
T 3gw4_A 148 CAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELE 181 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcC
Confidence 4468899999999999999999999999986543
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.48 E-value=7.6e-13 Score=125.56 Aligned_cols=191 Identities=15% Similarity=-0.003 Sum_probs=147.4
Q ss_pred HHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCC--CChHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 013299 180 LATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDP--KCLPALLIASKICGEYPDLAEEGATFASR 257 (446)
Q Consensus 180 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P--~~~~a~~~~~~~~~~~~~~~~eA~~~~~~ 257 (446)
|+..+++.+...+....+++.+|.++...|++++|+..+.++| ..+| ++.+++...+.+++. .|+.+.|.+.+++
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i--~~~~~~~~lea~~l~vqi~L~-~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGI--DNDEAEGTTELLLLAIEVALL-NNNVSTASTIFDN 161 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH--TSSCSTTHHHHHHHHHHHHHH-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHh--ccCCCcCcHHHHHHHHHHHHH-CCCHHHHHHHHHH
Confidence 6788888888876777778899999999999999999999999 7776 788888777777655 6899999999998
Q ss_pred HHHHcCCCcchhhhHHHHHhhch--hHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCH
Q 013299 258 ALECLGDGCDQMESTANCLLGIS--LSAQSKVAITDFDRATRQAKALQALVSAARSTNMR--DLSILYRLSLEYAEQRKL 333 (446)
Q Consensus 258 al~~~~~~~~~~~~~a~~~lg~~--~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~--~~~a~~~lg~~~~~~~~~ 333 (446)
+.+. +|+...........+..+ ....| .+++.+|+..|+++. ...|+ .+..+++ ++..+|++
T Consensus 162 ~~~~-~~d~~~~~d~~l~~Laea~v~l~~g---------~~~~q~A~~~f~El~-~~~p~~~~~~lLln---~~~~~g~~ 227 (310)
T 3mv2_B 162 YTNA-IEDTVSGDNEMILNLAESYIKFATN---------KETATSNFYYYEELS-QTFPTWKTQLGLLN---LHLQQRNI 227 (310)
T ss_dssp HHHH-SCHHHHHHHHHHHHHHHHHHHHHHT---------CSTTTHHHHHHHHHH-TTSCSHHHHHHHHH---HHHHHTCH
T ss_pred HHhc-CccccccchHHHHHHHHHHHHHHhC---------CccHHHHHHHHHHHH-HhCCCcccHHHHHH---HHHHcCCH
Confidence 8774 441000001233333333 22211 126889999999999 88887 4556666 88999999
Q ss_pred HHHHHHHHHHHhh----------cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHH
Q 013299 334 NAAHYYAKMLLKL----------EGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLR 392 (446)
Q Consensus 334 ~~A~~~~~~al~l----------~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~ 392 (446)
++|...+++++++ +|+++ .++.++..+...+|+ +|..+++++.+..| +++.+.-
T Consensus 228 ~eAe~~L~~l~~~~p~~~~k~~~~p~~~-~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P--~hp~i~d 291 (310)
T 3mv2_B 228 AEAQGIVELLLSDYYSVEQKENAVLYKP-TFLANQITLALMQGL--DTEDLTNQLVKLDH--EHAFIKH 291 (310)
T ss_dssp HHHHHHHHHHHSHHHHTTTCHHHHSSHH-HHHHHHHHHHHHTTC--TTHHHHHHHHHTTC--CCHHHHH
T ss_pred HHHHHHHHHHHHhcccccccccCCCCCH-HHHHHHHHHHHHhCh--HHHHHHHHHHHhCC--CChHHHH
Confidence 9999999998887 58884 999899888888998 89999999999999 7776543
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.48 E-value=3.2e-14 Score=138.45 Aligned_cols=137 Identities=12% Similarity=0.087 Sum_probs=89.9
Q ss_pred hHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCH-----------------HHHHHHHHHHHHcCCH
Q 013299 271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDL-----------------SILYRLSLEYAEQRKL 333 (446)
Q Consensus 271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~-----------------~a~~~lg~~~~~~~~~ 333 (446)
+..+..+|.++... +++++|+..|++++ .++|++. .+++++|.++..+|++
T Consensus 179 a~~~~~~g~~~~~~-----------g~~~~A~~~y~~Al-~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~ 246 (338)
T 2if4_A 179 ADRRKMDGNSLFKE-----------EKLEEAMQQYEMAI-AYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRY 246 (338)
T ss_dssp HHHHHHHHHHTCSS-----------SCCHHHHHHHHHHH-HHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHhc-----------CCHHHHHHHHHHHH-HHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 45677888887664 56899999999999 9999988 4999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHH-HHHhCCHHHHHHHHH
Q 013299 334 NAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKV-QLVQGQLKGAVETYT 412 (446)
Q Consensus 334 ~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~-~~~~g~~~eA~~~~~ 412 (446)
++|+.+|++++.++|++ ..+|+++|.++..+|++++|+.+|+++++++| ++..++..++.+ ....+..+++...|+
T Consensus 247 ~~A~~~~~~al~~~p~~-~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p--~~~~a~~~L~~l~~~~~~~~~~a~~~~~ 323 (338)
T 2if4_A 247 DEAIGHCNIVLTEEEKN-PKALFRRGKAKAELGQMDSARDDFRKAQKYAP--DDKAIRRELRALAEQEKALYQKQKEMYK 323 (338)
T ss_dssp HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------------
T ss_pred HHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 59999999999999999999999999999999 899999999988 556678889999999
Q ss_pred HHHHHHhhhh
Q 013299 413 HLLAALQVQT 422 (446)
Q Consensus 413 ~~l~l~~~~~ 422 (446)
+++...|++.
T Consensus 324 ~~l~~~p~~~ 333 (338)
T 2if4_A 324 GIFKGKDEGG 333 (338)
T ss_dssp ----------
T ss_pred HhhCCCCCCC
Confidence 9999988654
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.47 E-value=3.4e-15 Score=152.24 Aligned_cols=128 Identities=13% Similarity=0.068 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHH--HHHccCHHHHHH
Q 013299 296 TRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARI--LSAQKRYEDAET 373 (446)
Q Consensus 296 ~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~--~~~~g~~~eA~~ 373 (446)
+++++|+..|++++ +++|+++.+++++|.++..+|++++|+..|+++++++|+++ .++..++.+ +..+|++++|+.
T Consensus 54 g~~~~A~~~~~~al-~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~g~~~~A~~ 131 (477)
T 1wao_1 54 ECYGYALGDATRAI-ELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK-DAKMKYQECNKIVKQKAFERAIA 131 (477)
T ss_dssp TCHHHHHHHHHHHH-HSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCT-THHHHHHHHHHHHHHHHHCCC--
T ss_pred cCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHHHHHHHHhc
Confidence 45677777888888 78888888888888888888888888888888888888774 777777777 777788888888
Q ss_pred HHH-----------HHHhhcCCCC---------cHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHhhhhhhc
Q 013299 374 ILN-----------AALDQTGKWE---------QGELLRTKAKVQLVQGQ--LKGAVETYTHLLAALQVQTKTF 425 (446)
Q Consensus 374 ~~~-----------~al~~~p~~~---------~~~~~~~~a~~~~~~g~--~~eA~~~~~~~l~l~~~~~~~~ 425 (446)
.++ +++...|++. .......+...+...+. .++....+.++.++....+...
T Consensus 132 ~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~itl~~l~~lie~l~~~~~l~e~~v~~L~~~a~eil~~e~~~~ 205 (477)
T 1wao_1 132 GDEHKRSVVDSLDIESMTIEDEYSGPKLEDGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSKLSTLV 205 (477)
T ss_dssp ----CCSTTTCCTTSSCCCCTTCCSCCCGGGSCCHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHTSCSEE
T ss_pred cccccchhHhhhhhhhccccccccccccccccccHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHccCCCeE
Confidence 887 7776666310 01111122222333333 3455567788888776655443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=7.3e-13 Score=111.04 Aligned_cols=115 Identities=13% Similarity=0.034 Sum_probs=105.0
Q ss_pred hHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 013299 271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRD---LSILYRLSLEYAEQRKLNAAHYYAKMLLKLE 347 (446)
Q Consensus 271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~---~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~ 347 (446)
...++.+|.++... +++++|+..|++++ +++|++ +.+++++|.++...|++++|+..+++++.++
T Consensus 28 ~~~~~~~a~~~~~~-----------~~~~~A~~~~~~a~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 95 (148)
T 2dba_A 28 VEQLRKEGNELFKC-----------GDYGGALAAYTQAL-GLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD 95 (148)
T ss_dssp HHHHHHHHHHHHTT-----------TCHHHHHHHHHHHH-TSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh-----------CCHHHHHHHHHHHH-HHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC
Confidence 56788888887654 57899999999999 999998 8999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHH
Q 013299 348 GGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLV 400 (446)
Q Consensus 348 P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~ 400 (446)
|++ ..+|..+|.++..+|++++|+.+++++++.+| ++..++..++.+...
T Consensus 96 ~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 96 GGD-VKALYRRSQALEKLGRLDQAVLDLQRCVSLEP--KNKVFQEALRNISGP 145 (148)
T ss_dssp SCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS--SCHHHHHHHHHHHCS
T ss_pred ccC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CcHHHHHHHHHHHhh
Confidence 999 59999999999999999999999999999999 888888887776543
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.46 E-value=1e-12 Score=131.13 Aligned_cols=207 Identities=9% Similarity=-0.008 Sum_probs=128.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHH-----------------HHHHHHHHHHHCCChHHHHHHHHHHhc
Q 013299 161 PSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKE-----------------RYHILALCYYGAGEDLVALNLLRTLLS 223 (446)
Q Consensus 161 ~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~-----------------~~~~lg~~~~~~g~~~eA~~~~~~al~ 223 (446)
|......|..+...|++++|++.|.++++.+|...+ ++.+||.+|...|++++|+..|++++
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~- 82 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHST- 82 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTH-
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-
Confidence 344556677788889999999999999998887653 57889999999999999999999988
Q ss_pred CCCCCCChHHH-----HHHHHHHhcCCCCHHHHHHHHHHHHHHcCC-CcchhhhHHHHHhhchhHhhhhhhhchHHHHHH
Q 013299 224 GSEDPKCLPAL-----LIASKICGEYPDLAEEGATFASRALECLGD-GCDQMESTANCLLGISLSAQSKVAITDFDRATR 297 (446)
Q Consensus 224 ~~~~P~~~~a~-----~~~~~~~~~~~~~~~eA~~~~~~al~~~~~-~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~ 297 (446)
...+....+. ....+.++...|.+++|+.++++++..... ........++..+|.+|... |+
T Consensus 83 -~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-----------g~ 150 (434)
T 4b4t_Q 83 -EYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQK-----------KQ 150 (434)
T ss_dssp -HHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHH-----------TC
T ss_pred -HHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHc-----------cC
Confidence 5555433221 122234455567777777777777764321 11122344555566555443 34
Q ss_pred HHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC--C----HHHHHHHHHHHHHc
Q 013299 298 QAKALQALVSAARST------NMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS--N----LKGWLLMARILSAQ 365 (446)
Q Consensus 298 ~~eAl~~~~~al~~~------~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~--~----~~~~~~la~~~~~~ 365 (446)
+++|+..+++++ .. .|....++..+|.++...|++++|...+++++.+.|.. + ...+..+|.++...
T Consensus 151 ~~~A~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~ 229 (434)
T 4b4t_Q 151 YKDSLALINDLL-REFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCED 229 (434)
T ss_dssp HHHHHHHHHHHH-HHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSS
T ss_pred hHHHHHHHHHHH-HHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHH
Confidence 566666666655 43 23334555666666666666666666666665554321 0 13344555555566
Q ss_pred cCHHHHHHHHHHHHhh
Q 013299 366 KRYEDAETILNAALDQ 381 (446)
Q Consensus 366 g~~~eA~~~~~~al~~ 381 (446)
|+|++|..+|.++++.
T Consensus 230 ~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 230 KDYKTAFSYFFESFES 245 (434)
T ss_dssp SCHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHH
Confidence 6666666666666544
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.44 E-value=9.5e-13 Score=116.72 Aligned_cols=163 Identities=14% Similarity=0.018 Sum_probs=113.7
Q ss_pred HhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHH
Q 013299 172 SIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEG 251 (446)
Q Consensus 172 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA 251 (446)
...|++++|.+.++......+..+.+++.+|.++...|++++|+..|++++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al----------------------------- 53 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQ----------------------------- 53 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----------------------------
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH-----------------------------
Confidence 445666777664443333323556666667777777777777777766666
Q ss_pred HHHHHHHHHHcCC-CcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhh---CCCC----HHHHHHH
Q 013299 252 ATFASRALECLGD-GCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARST---NMRD----LSILYRL 323 (446)
Q Consensus 252 ~~~~~~al~~~~~-~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~---~P~~----~~a~~~l 323 (446)
+.... ........++..+|.++... |++++|+..+++++ ++ .|++ ..+++++
T Consensus 54 --------~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~l 113 (203)
T 3gw4_A 54 --------QQAQKSGDHTAEHRALHQVGMVERMA-----------GNWDAARRCFLEER-ELLASLPEDPLAASANAYEV 113 (203)
T ss_dssp --------HHHHTTCCHHHHHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHHHHSCCCHHHHHHHHHHH
T ss_pred --------HHHHHcCCcHHHHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-HHHHHcCccHHHHHHHHHHH
Confidence 21111 01112356777888887654 56889999999998 87 4433 4678999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhcCC--CC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013299 324 SLEYAEQRKLNAAHYYAKMLLKLEGG--SN---LKGWLLMARILSAQKRYEDAETILNAALDQTG 383 (446)
Q Consensus 324 g~~~~~~~~~~~A~~~~~~al~l~P~--~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 383 (446)
|.++..+|++++|+.++++++.+.+. ++ ..++.++|.++..+|++++|+.++++++++..
T Consensus 114 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 114 ATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA 178 (203)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987543 21 13468999999999999999999999998754
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.44 E-value=8.4e-13 Score=107.83 Aligned_cols=115 Identities=13% Similarity=0.180 Sum_probs=91.8
Q ss_pred hHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Q 013299 271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS 350 (446)
Q Consensus 271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~ 350 (446)
+.+++.+|.++... |++++|+..|++++ ..+|+++.+++++|.++...|++++|+..+++++.+.|++
T Consensus 4 ~~~~~~l~~~~~~~-----------~~~~~A~~~~~~a~-~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 71 (131)
T 1elr_A 4 ALKEKELGNDAYKK-----------KDFDTALKHYDKAK-ELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN 71 (131)
T ss_dssp HHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHh-----------cCHHHHHHHHHHHH-hcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc
Confidence 45677777777553 56788888888888 8888888888888888888888888888888888888765
Q ss_pred -------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHh
Q 013299 351 -------NLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQ 401 (446)
Q Consensus 351 -------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~ 401 (446)
+ .++..+|.++..+|++++|+.+++++++..| +...+..++.+....
T Consensus 72 ~~~~~~~~-~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~l~~~~~~~ 125 (131)
T 1elr_A 72 REDYRQIA-KAYARIGNSYFKEEKYKDAIHFYNKSLAEHR---TPDVLKKCQQAEKIL 125 (131)
T ss_dssp TTCHHHHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHH
T ss_pred chhHHHHH-HHHHHHHHHHHHhccHHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHH
Confidence 4 7888888888888888888888888888877 356666666665443
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.44 E-value=6.5e-13 Score=130.84 Aligned_cols=125 Identities=14% Similarity=0.047 Sum_probs=114.8
Q ss_pred hHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHh----------------hCCCCHHHHHHHHHHHHHcCCHH
Q 013299 271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARS----------------TNMRDLSILYRLSLEYAEQRKLN 334 (446)
Q Consensus 271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~----------------~~P~~~~a~~~lg~~~~~~~~~~ 334 (446)
+..+..+|..+... +++++|+..|++++ + ++|.++.+++++|.++..+|+++
T Consensus 223 a~~~~~~g~~~~~~-----------g~~~~Ai~~y~kAl-~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~ 290 (370)
T 1ihg_A 223 SEDLKNIGNTFFKS-----------QNWEMAIKKYTKVL-RYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQ 290 (370)
T ss_dssp HHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHh-----------cCHHHHHHHHHHHH-HHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHH
Confidence 45677788877654 57899999999999 8 88999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHH
Q 013299 335 AAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVET 410 (446)
Q Consensus 335 ~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~ 410 (446)
+|+.+|+++++++|++ ..+|+.+|.++..+|++++|+..|++|++++| ++..++..++.++..+++.+++...
T Consensus 291 ~A~~~~~~al~~~p~~-~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P--~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 291 GAVDSCLEALEIDPSN-TKALYRRAQGWQGLKEYDQALADLKKAQEIAP--EDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHTTCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCchh-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 59999999999999999999999999999999 8999999999999999988887654
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.43 E-value=8e-13 Score=107.96 Aligned_cols=103 Identities=12% Similarity=0.098 Sum_probs=96.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCc------
Q 013299 314 MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQ------ 387 (446)
Q Consensus 314 P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~------ 387 (446)
|+.+.+++.+|.++...|++++|+..|++++.++|++ ..++..+|.++..+|++++|+.++++++...| ++
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~ 77 (131)
T 1elr_A 1 GKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN-MTYITNQAAVYFEKGDYNKCRELCEKAIEVGR--ENREDYRQ 77 (131)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH--HSTTCHHH
T ss_pred ChHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc-HHHHHHHHHHHHHhccHHHHHHHHHHHHhhcc--ccchhHHH
Confidence 4457889999999999999999999999999999999 59999999999999999999999999999988 55
Q ss_pred -HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Q 013299 388 -GELLRTKAKVQLVQGQLKGAVETYTHLLAALQ 419 (446)
Q Consensus 388 -~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~ 419 (446)
..+++.+|.++...|++++|++.|++++++.|
T Consensus 78 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 110 (131)
T 1elr_A 78 IAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR 110 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 88999999999999999999999999999865
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=2.7e-13 Score=115.51 Aligned_cols=92 Identities=11% Similarity=0.013 Sum_probs=85.2
Q ss_pred HHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCH----------HHHHHHHHHHHhhcCCCCcHHHHHHHHHH
Q 013299 328 AEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRY----------EDAETILNAALDQTGKWEQGELLRTKAKV 397 (446)
Q Consensus 328 ~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~----------~eA~~~~~~al~~~p~~~~~~~~~~~a~~ 397 (446)
.+.+++++|+..++++++++|++ +++|.++|.++..++++ ++|+..|++||+++| ++..+|+++|.+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~-aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP--~~~~A~~~LG~a 89 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLD-ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP--KKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCc--CcHHHHHHHHHH
Confidence 45678999999999999999999 59999999999999886 599999999999999 899999999999
Q ss_pred HHHhC-----------CHHHHHHHHHHHHHHHhhhh
Q 013299 398 QLVQG-----------QLKGAVETYTHLLAALQVQT 422 (446)
Q Consensus 398 ~~~~g-----------~~~eA~~~~~~~l~l~~~~~ 422 (446)
+..+| ++++|+++|++++++.|++.
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 99885 89999999999999998753
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.1e-12 Score=110.97 Aligned_cols=140 Identities=14% Similarity=0.010 Sum_probs=117.9
Q ss_pred hhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHH
Q 013299 269 MESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDL------SILYRLSLEYAEQRKLNAAHYYAKM 342 (446)
Q Consensus 269 ~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~------~a~~~lg~~~~~~~~~~~A~~~~~~ 342 (446)
....++..+|.++... +++++|+..+++++ ++.|+.. .+++++|.++..+|++++|+.++++
T Consensus 7 ~~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 74 (164)
T 3ro3_A 7 AQGRAFGNLGNTHYLL-----------GNFRDAVIAHEQRL-LIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKK 74 (164)
T ss_dssp HHHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-----------cCHHHHHHHHHHHH-HHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3466788889888664 56899999999999 8866433 4889999999999999999999999
Q ss_pred HHhhcCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCC----CcHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 013299 343 LLKLEGGSN-----LKGWLLMARILSAQKRYEDAETILNAALDQTGKW----EQGELLRTKAKVQLVQGQLKGAVETYTH 413 (446)
Q Consensus 343 al~l~P~~~-----~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~----~~~~~~~~~a~~~~~~g~~~eA~~~~~~ 413 (446)
++.+.+... ..++.++|.++..+|++++|+.+++++++..+.. ....++..+|.++...|++++|++.+++
T Consensus 75 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 154 (164)
T 3ro3_A 75 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 154 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999876531 3578899999999999999999999999774310 2356788999999999999999999999
Q ss_pred HHHHHhh
Q 013299 414 LLAALQV 420 (446)
Q Consensus 414 ~l~l~~~ 420 (446)
++++.+.
T Consensus 155 a~~~~~~ 161 (164)
T 3ro3_A 155 HLEISRE 161 (164)
T ss_dssp HHHHHTT
T ss_pred HHHHHHH
Confidence 9999754
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.7e-13 Score=110.27 Aligned_cols=93 Identities=16% Similarity=0.108 Sum_probs=83.6
Q ss_pred HcCCHHHHHHHHHHHHhh---cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHH
Q 013299 329 EQRKLNAAHYYAKMLLKL---EGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLK 405 (446)
Q Consensus 329 ~~~~~~~A~~~~~~al~l---~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~ 405 (446)
.+|++++|+..|++++++ +|++ ..+|.++|.++..+|+|++|+.+++++++.+| +++.+++++|.++...|+++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~-~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~~ 78 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDL-AECYLGLGSTFRTLGEYRKAEAVLANGVKQFP--NHQALRVFYAMVLYNLGRYE 78 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CchHHHHHHHHHHHHcCCHH
Confidence 368999999999999999 6988 59999999999999999999999999999999 89999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhh
Q 013299 406 GAVETYTHLLAALQVQTKT 424 (446)
Q Consensus 406 eA~~~~~~~l~l~~~~~~~ 424 (446)
+|+..|++++++.|+++..
T Consensus 79 ~A~~~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 79 QGVELLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHHHhCCCcHHH
Confidence 9999999999999876543
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.41 E-value=4.8e-12 Score=120.04 Aligned_cols=198 Identities=13% Similarity=-0.029 Sum_probs=152.7
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCC--CcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCC
Q 013299 151 KVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGII--NRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDP 228 (446)
Q Consensus 151 ~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P 228 (446)
+..++..+.+..++..+|.++...|++++|++++.+.+..+| ++.+++..++.++..+||.+.|...+++.. +.+|
T Consensus 90 ~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~--~~~~ 167 (310)
T 3mv2_B 90 ENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT--NAIE 167 (310)
T ss_dssp HHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHSC
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH--hcCc
Confidence 334455466777888999999999999999999999999997 999999999999999999999999999998 7899
Q ss_pred ------CChHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHH
Q 013299 229 ------KCLPALLIASKICG-EYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKA 301 (446)
Q Consensus 229 ------~~~~a~~~~~~~~~-~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA 301 (446)
+.+...+..+.+.+ ...+++.+|...|+++.+.. |+. .....+++ ++. .+|++++|
T Consensus 168 d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~-p~~--~~~~lLln---~~~-----------~~g~~~eA 230 (310)
T 3mv2_B 168 DTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF-PTW--KTQLGLLN---LHL-----------QQRNIAEA 230 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS-CSH--HHHHHHHH---HHH-----------HHTCHHHH
T ss_pred cccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC-CCc--ccHHHHHH---HHH-----------HcCCHHHH
Confidence 33333443343322 23458999999999987743 320 01122222 443 35789999
Q ss_pred HHHHHHHHHhh----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHH
Q 013299 302 LQALVSAARST----------NMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDA 371 (446)
Q Consensus 302 l~~~~~al~~~----------~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA 371 (446)
...++.++ +. +|+|++++.|+..+...+|+ +|.++++++..++|++| -+ .++.+.
T Consensus 231 e~~L~~l~-~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp-~i-----------~d~~~k 295 (310)
T 3mv2_B 231 QGIVELLL-SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHA-FI-----------KHHQEI 295 (310)
T ss_dssp HHHHHHHH-SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCH-HH-----------HHHHHH
T ss_pred HHHHHHHH-HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCCh-HH-----------HHHHHH
Confidence 99999888 77 59999999999988888998 99999999999999996 32 245555
Q ss_pred HHHHHHHHhhc
Q 013299 372 ETILNAALDQT 382 (446)
Q Consensus 372 ~~~~~~al~~~ 382 (446)
...|++++...
T Consensus 296 ~~~Fd~~~~ky 306 (310)
T 3mv2_B 296 DAKFDELVRKY 306 (310)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHHh
Confidence 66666666543
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.1e-12 Score=105.94 Aligned_cols=82 Identities=16% Similarity=0.240 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 013299 300 KALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAAL 379 (446)
Q Consensus 300 eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al 379 (446)
+|+..|++++ +.+|+++.+++++|.++...|++++|+..|++++.++|++ ..+|..+|.++..+|++++|+.+|++++
T Consensus 3 ~a~~~~~~al-~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAML-AQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY-SVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHH-TTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5889999999 9999999999999999999999999999999999999999 5999999999999999999999999999
Q ss_pred hhcC
Q 013299 380 DQTG 383 (446)
Q Consensus 380 ~~~p 383 (446)
+..|
T Consensus 81 ~~~~ 84 (115)
T 2kat_A 81 AAAQ 84 (115)
T ss_dssp HHHH
T ss_pred Hhcc
Confidence 9988
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.41 E-value=7.9e-13 Score=104.95 Aligned_cols=105 Identities=10% Similarity=-0.022 Sum_probs=97.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCC--ChHHH
Q 013299 157 IEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPK--CLPAL 234 (446)
Q Consensus 157 ~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~--~~~a~ 234 (446)
+|+++.++..+|.++...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|++++ ..+|+ ++.++
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~--~~~~~~~~~~~~ 79 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVI--NVIEDEYNKDVW 79 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HTSCCTTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHH--HhCcccchHHHH
Confidence 588999999999999999999999999999999999999999999999999999999999999999 89999 99998
Q ss_pred HHHHHHHhcCC-CCHHHHHHHHHHHHHHcCC
Q 013299 235 LIASKICGEYP-DLAEEGATFASRALECLGD 264 (446)
Q Consensus 235 ~~~~~~~~~~~-~~~~eA~~~~~~al~~~~~ 264 (446)
..++.+ +... |++++|+.++++++...|+
T Consensus 80 ~~l~~~-~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 80 AAKADA-LRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHHHH-HTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHH-HHHHhCCHHHHHHHHHHHhhcccC
Confidence 887766 4568 8999999999999996554
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.39 E-value=1.6e-11 Score=129.49 Aligned_cols=228 Identities=9% Similarity=-0.011 Sum_probs=185.1
Q ss_pred HHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHH-HHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHH
Q 013299 178 SSLATQIEELLPGIINRKERYHILALCYYGAGEDLVAL-NLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFAS 256 (446)
Q Consensus 178 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~-~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~ 256 (446)
......|++++...|.+++.|+..+..+...|+.++|. ..|++|+ ...|++...++..+.+. ...|++++|...|+
T Consensus 326 ~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi--~~~P~s~~Lwl~~a~~e-e~~~~~e~aR~iye 402 (679)
T 4e6h_A 326 ARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQ--QCIPNSAVLAFSLSEQY-ELNTKIPEIETTIL 402 (679)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHH--HHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH--HhCCCCHHHHHHHHHHH-HHhCCHHHHHHHHH
Confidence 45567899999999999999999999999999999997 9999999 88999988777666654 44688999999999
Q ss_pred HHHHHcC----------CCcc-------hhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhh-CCCCHH
Q 013299 257 RALECLG----------DGCD-------QMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARST-NMRDLS 318 (446)
Q Consensus 257 ~al~~~~----------~~~~-------~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~-~P~~~~ 318 (446)
+++...+ |..+ .....+|....... .+.+..+.|...|.+|+ +. .+..+.
T Consensus 403 k~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~e-----------rR~~~l~~AR~vf~~A~-~~~~~~~~~ 470 (679)
T 4e6h_A 403 SCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTM-----------KRIQGLAASRKIFGKCR-RLKKLVTPD 470 (679)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHH-----------HHHHCHHHHHHHHHHHH-HTGGGSCTH
T ss_pred HHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHH-----------HHcCCHHHHHHHHHHHH-HhcCCCChH
Confidence 9998531 1100 00122344443322 24567899999999999 77 555678
Q ss_pred HHHHHHHHHHHcC-CHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCC-CcHHHHHHHHH
Q 013299 319 ILYRLSLEYAEQR-KLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKW-EQGELLRTKAK 396 (446)
Q Consensus 319 a~~~lg~~~~~~~-~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~~~~~a~ 396 (446)
++...|.+....+ +++.|...|+++++..|++ ...|...+..+...|+.+.|..+|++|+...|+. ....+|.....
T Consensus 471 lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~-~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~ 549 (679)
T 4e6h_A 471 IYLENAYIEYHISKDTKTACKVLELGLKYFATD-GEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIF 549 (679)
T ss_dssp HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCc-hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 8887777776655 5999999999999999998 4999999999999999999999999999987721 24677778888
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHhhh
Q 013299 397 VQLVQGQLKGAVETYTHLLAALQVQ 421 (446)
Q Consensus 397 ~~~~~g~~~eA~~~~~~~l~l~~~~ 421 (446)
.....|+.+.+...++++++..|+.
T Consensus 550 fE~~~G~~~~~~~v~~R~~~~~P~~ 574 (679)
T 4e6h_A 550 FESKVGSLNSVRTLEKRFFEKFPEV 574 (679)
T ss_dssp HHHHTCCSHHHHHHHHHHHHHSTTC
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999854
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.33 E-value=8.4e-13 Score=105.23 Aligned_cols=95 Identities=15% Similarity=0.034 Sum_probs=87.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCc------HH
Q 013299 316 DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQ------GE 389 (446)
Q Consensus 316 ~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~------~~ 389 (446)
++.+++.+|.++...|++++|+..|++++.++|++ ..+|.++|.++..+|++++|+..++++++++| ++ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQN-PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTS--TAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCS--STTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--CccHHHHHHH
Confidence 57889999999999999999999999999999999 59999999999999999999999999999999 77 88
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHH
Q 013299 390 LLRTKAKVQLVQGQLKGAVETYTH 413 (446)
Q Consensus 390 ~~~~~a~~~~~~g~~~eA~~~~~~ 413 (446)
+++.+|.++...|++++|+..+++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHHHH
Confidence 999999999999988887766553
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.31 E-value=4.7e-11 Score=125.96 Aligned_cols=217 Identities=7% Similarity=-0.127 Sum_probs=177.6
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCC--
Q 013299 150 RKVALKRIEWDPSILDHLSFAFSIAGDLSSLA-TQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSE-- 226 (446)
Q Consensus 150 ~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~-~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~-- 226 (446)
++.++...|.++++|...+..+...|+.++|. +.|++|+...|.+...|+.++......|++++|..+|++++ ..
T Consensus 332 Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l--~~l~ 409 (679)
T 4e6h_A 332 YMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCI--DRIH 409 (679)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH--HHHH
Confidence 46677888999999999999999999999997 99999999999999999999999999999999999999999 43
Q ss_pred ---------CCC-----------ChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhh
Q 013299 227 ---------DPK-----------CLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSK 286 (446)
Q Consensus 227 ---------~P~-----------~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~ 286 (446)
.|. ...+|+..+.+..+ .+..+.|...|.+|++..++.. ...|...+..-...
T Consensus 410 ~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR-~~~l~~AR~vf~~A~~~~~~~~----~~lyi~~A~lE~~~-- 482 (679)
T 4e6h_A 410 LDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKR-IQGLAASRKIFGKCRRLKKLVT----PDIYLENAYIEYHI-- 482 (679)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHTGGGSC----THHHHHHHHHHHTT--
T ss_pred HHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhcCCCC----hHHHHHHHHHHHHh--
Confidence 253 23356555554433 5678999999999998523221 23444333222111
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC--CCHHHHHHHHHHHHH
Q 013299 287 VAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG--SNLKGWLLMARILSA 364 (446)
Q Consensus 287 ~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~--~~~~~~~~la~~~~~ 364 (446)
.++.+.|...|++++ +..|+++..|...+......|+.+.|...|++|+...|+ .....|.........
T Consensus 483 --------~~d~e~Ar~ife~~L-k~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~ 553 (679)
T 4e6h_A 483 --------SKDTKTACKVLELGL-KYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESK 553 (679)
T ss_dssp --------TSCCHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHH
T ss_pred --------CCCHHHHHHHHHHHH-HHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 123689999999999 999999999998898888999999999999999999884 224788888999999
Q ss_pred ccCHHHHHHHHHHHHhhcCC
Q 013299 365 QKRYEDAETILNAALDQTGK 384 (446)
Q Consensus 365 ~g~~~eA~~~~~~al~~~p~ 384 (446)
.|+.+.+..+.+++++..|+
T Consensus 554 ~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 554 VGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp TCCSHHHHHHHHHHHHHSTT
T ss_pred cCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999994
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=99.31 E-value=8e-12 Score=98.63 Aligned_cols=71 Identities=13% Similarity=0.134 Sum_probs=65.8
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013299 312 TNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTG 383 (446)
Q Consensus 312 ~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 383 (446)
.+|+++.+++.+|.++..+|++++|+..|+++++++|+++ .+|..+|.++..+|++++|+..|++++++.|
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYV-GTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 5799999999999999999999999999999999999995 9999999999999999999999999999877
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=99.30 E-value=2.2e-11 Score=93.20 Aligned_cols=88 Identities=19% Similarity=0.285 Sum_probs=80.7
Q ss_pred hCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHH
Q 013299 312 TNM-RDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGEL 390 (446)
Q Consensus 312 ~~P-~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 390 (446)
++| +++.+++.+|.++...|++++|+..|++++.++|++ ..+|..+|.++..+|++++|+.+++++++.+| ++..+
T Consensus 3 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p--~~~~~ 79 (91)
T 1na3_A 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--NNAEA 79 (91)
T ss_dssp ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHH
T ss_pred CcccccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--CCHHH
Confidence 444 468899999999999999999999999999999999 59999999999999999999999999999999 89999
Q ss_pred HHHHHHHHHHhC
Q 013299 391 LRTKAKVQLVQG 402 (446)
Q Consensus 391 ~~~~a~~~~~~g 402 (446)
+..+|.++..+|
T Consensus 80 ~~~l~~~~~~~g 91 (91)
T 1na3_A 80 KQNLGNAKQKQG 91 (91)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHhcC
Confidence 999999988765
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.28 E-value=1.7e-11 Score=120.72 Aligned_cols=104 Identities=12% Similarity=0.008 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh----------------hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 013299 317 LSILYRLSLEYAEQRKLNAAHYYAKMLLK----------------LEGGSNLKGWLLMARILSAQKRYEDAETILNAALD 380 (446)
Q Consensus 317 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~----------------l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 380 (446)
+..+..+|..+...|++++|+..|++|++ ++|.+ ..+|.++|.++..+|+|++|+.+++++++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~-~~~~~nla~~~~~~g~~~~A~~~~~~al~ 301 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVA-LSCVLNIGACKLKMSDWQGAVDSCLEALE 301 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHH-HHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 45688999999999999999999999999 78888 59999999999999999999999999999
Q ss_pred hcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhh
Q 013299 381 QTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTK 423 (446)
Q Consensus 381 ~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~ 423 (446)
++| ++..+++.+|.++..+|++++|+..|++++++.|++..
T Consensus 302 ~~p--~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~ 342 (370)
T 1ihg_A 302 IDP--SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKA 342 (370)
T ss_dssp TCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred hCc--hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Confidence 999 89999999999999999999999999999999876443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.6e-10 Score=115.02 Aligned_cols=227 Identities=13% Similarity=0.011 Sum_probs=157.3
Q ss_pred HHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHhC
Q 013299 12 AIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRALL 91 (446)
Q Consensus 12 ~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~al~ 91 (446)
+....|..+.+.|+|++|++.|.++++..+.... ...............+.++..+|.+|...|++++|+..|.+++.
T Consensus 6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSS--AAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSS--BSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccch--hHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999999986422110 00000111122334677899999999999999999999999998
Q ss_pred CCCCCChHHHH-HHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHH-HhhcCCCCHHHHHHHHH
Q 013299 92 PCWNLDAETTA-KLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKV-ALKRIEWDPSILDHLSF 169 (446)
Q Consensus 92 ~~~~~~~~~~~-~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~-~l~~~p~~~~~~~~lg~ 169 (446)
..+........ .+...++ .++...|++++|+..+..++... -....+.-..++..+|.
T Consensus 84 ~~~~~~~~~~~~~~~~~l~--------------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 143 (434)
T 4b4t_Q 84 YMMQFAKSKTVKVLKTLIE--------------------KFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLAT 143 (434)
T ss_dssp HHHTSCHHHHHHHHHHHHH--------------------HHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHH
T ss_pred HHHHccchHHHHHHHHHHH--------------------HHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 72111111111 1111111 23445678999988775442211 11222344678899999
Q ss_pred HHHhcCCHHHHHHHHHhhCCC------CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCC---CChH---HHHHH
Q 013299 170 AFSIAGDLSSLATQIEELLPG------IINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDP---KCLP---ALLIA 237 (446)
Q Consensus 170 ~l~~~~~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P---~~~~---a~~~~ 237 (446)
++...|++++|+..+++++.. .|...+++..+|.++...|++++|...|++++ ...| +.+. .....
T Consensus 144 ~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al--~~~~~~~~~~~~~~~~~~~ 221 (434)
T 4b4t_Q 144 LHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAAR--TAANSIYCPTQTVAELDLM 221 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHSCCCHHHHHHHHHH
T ss_pred HHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH--HHhhcCCCchHHHHHHHHH
Confidence 999999999999999988644 45567899999999999999999999999998 4432 2211 22334
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHc
Q 013299 238 SKICGEYPDLAEEGATFASRALECL 262 (446)
Q Consensus 238 ~~~~~~~~~~~~eA~~~~~~al~~~ 262 (446)
.+.++...+++++|..+|.++++..
T Consensus 222 ~g~~~~~~~~y~~A~~~~~~a~~~~ 246 (434)
T 4b4t_Q 222 SGILHCEDKDYKTAFSYFFESFESY 246 (434)
T ss_dssp HHHHTTSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 4556777899999999999998854
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.26 E-value=6e-11 Score=95.63 Aligned_cols=86 Identities=20% Similarity=0.158 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 013299 334 NAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTH 413 (446)
Q Consensus 334 ~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~ 413 (446)
++|+..|+++++++|++ ..+|..+|.++..+|++++|+.+|+++++.+| ++..+++.+|.++..+|++++|+..|++
T Consensus 2 ~~a~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 2 QAITERLEAMLAQGTDN-MLLRFTLGKTYAEHEQFDAALPHLRAALDFDP--TYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CCHHHHHHHHHTTTCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 36889999999999999 59999999999999999999999999999999 8999999999999999999999999999
Q ss_pred HHHHHhhhh
Q 013299 414 LLAALQVQT 422 (446)
Q Consensus 414 ~l~l~~~~~ 422 (446)
++++.|...
T Consensus 79 al~~~~~~~ 87 (115)
T 2kat_A 79 GLAAAQSRG 87 (115)
T ss_dssp HHHHHHHHT
T ss_pred HHHhccccc
Confidence 999998654
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.23 E-value=9.7e-11 Score=98.75 Aligned_cols=141 Identities=13% Similarity=-0.008 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHH
Q 013299 195 KERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTAN 274 (446)
Q Consensus 195 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~ 274 (446)
..+++.+|.++...|++++|+..+++++ ...|+.. +......++
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al--~~~~~~~----------------------------------~~~~~~~~~ 52 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRL--LIAKEFG----------------------------------DKAAERIAY 52 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHHT----------------------------------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHHHHhC----------------------------------CchHHHHHH
Confidence 4566777777777777777777777777 3332110 011123466
Q ss_pred HHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC
Q 013299 275 CLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRD------LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEG 348 (446)
Q Consensus 275 ~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~------~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P 348 (446)
..+|.++... |++++|+..+++++ ++.+.. ..+++++|.++...|++++|+.++++++.+.+
T Consensus 53 ~~l~~~~~~~-----------g~~~~A~~~~~~a~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 120 (164)
T 3ro3_A 53 SNLGNAYIFL-----------GEFETASEYYKKTL-LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 120 (164)
T ss_dssp HHHHHHHHHT-----------TCHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc-----------CCHHHHHHHHHHHH-HHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 6777777554 46788888888888 776543 56889999999999999999999999998753
Q ss_pred CC-----CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013299 349 GS-----NLKGWLLMARILSAQKRYEDAETILNAALDQTG 383 (446)
Q Consensus 349 ~~-----~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 383 (446)
.. ...++..+|.++..+|++++|+.++++++++..
T Consensus 121 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 121 ELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 22 125788999999999999999999999998765
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.21 E-value=5.8e-12 Score=100.25 Aligned_cols=95 Identities=9% Similarity=-0.059 Sum_probs=85.8
Q ss_pred hHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Q 013299 271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS 350 (446)
Q Consensus 271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~ 350 (446)
+.+++.+|.++... |++++|+..|++++ +++|+++.+++++|.++..+|++++|+..|+++++++|++
T Consensus 4 ~~~~~~~g~~~~~~-----------~~~~~A~~~~~~al-~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQ-----------GLYREAVHCYDQLI-TAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHHHHHHHTT-----------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred HHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 56788899888665 57899999999999 9999999999999999999999999999999999999997
Q ss_pred ------CHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 013299 351 ------NLKGWLLMARILSAQKRYEDAETILNAA 378 (446)
Q Consensus 351 ------~~~~~~~la~~~~~~g~~~eA~~~~~~a 378 (446)
. .++..+|.++..+|++++|+..+++.
T Consensus 72 ~~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 72 EHVAIRS-KLQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp TSHHHHH-HHHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred cHHHHHH-HHHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 5 78999999999999998887766543
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.17 E-value=5.9e-11 Score=92.74 Aligned_cols=92 Identities=12% Similarity=0.094 Sum_probs=76.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHH-HHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHH
Q 013299 320 LYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLK-GWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQ 398 (446)
Q Consensus 320 ~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~-~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~ 398 (446)
.+.+|.++...|++++|+..|+++++++|++ .. +|..+|.++..+|++++|+.+|+++++.+| ++..++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~----- 74 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVG-KDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP--DSPALQAR----- 74 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSST-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TSTHHHHH-----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CcHHHHHH-----
Confidence 3577888888999999999999999999988 48 899999999999999999999999999999 77776644
Q ss_pred HHhCCHHHHHHHHHHHHHHHhhhh
Q 013299 399 LVQGQLKGAVETYTHLLAALQVQT 422 (446)
Q Consensus 399 ~~~g~~~eA~~~~~~~l~l~~~~~ 422 (446)
+.+.+++..|++++...|+..
T Consensus 75 ---~~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 75 ---KMVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp ---HHHHHHHHHHCCTTHHHHCCS
T ss_pred ---HHHHHHHHHHHHHhccCcccc
Confidence 567788888888888877543
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=99.12 E-value=2.8e-10 Score=89.64 Aligned_cols=75 Identities=8% Similarity=0.016 Sum_probs=68.3
Q ss_pred hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhh
Q 013299 346 LEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTK 423 (446)
Q Consensus 346 l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~ 423 (446)
.+|++ ..+|+.+|.++..+|++++|+.+|+++++.+| +++.+|+.+|.++...|++++|++.|++++++.|...+
T Consensus 2 ~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~ 76 (100)
T 3ma5_A 2 EDPED-PFTRYALAQEHLKHDNASRALALFEELVETDP--DYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGT 76 (100)
T ss_dssp ---CC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCccC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCc
Confidence 47998 59999999999999999999999999999999 89999999999999999999999999999999886543
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=99.11 E-value=6.1e-10 Score=84.97 Aligned_cols=83 Identities=18% Similarity=0.144 Sum_probs=76.2
Q ss_pred hHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Q 013299 271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS 350 (446)
Q Consensus 271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~ 350 (446)
..+++.+|.++... +++++|+..|++++ +++|+++.+++++|.++...|++++|+..|++++.++|++
T Consensus 9 ~~~~~~la~~~~~~-----------~~~~~A~~~~~~a~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 76 (91)
T 1na3_A 9 AEAWYNLGNAYYKQ-----------GDYDEAIEYYQKAL-ELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 76 (91)
T ss_dssp HHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHc-----------cCHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 56788899888654 57899999999999 9999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcc
Q 013299 351 NLKGWLLMARILSAQK 366 (446)
Q Consensus 351 ~~~~~~~la~~~~~~g 366 (446)
..++.++|.++..+|
T Consensus 77 -~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 77 -AEAKQNLGNAKQKQG 91 (91)
T ss_dssp -HHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHHHhcC
Confidence 599999999987765
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=1.8e-09 Score=100.21 Aligned_cols=88 Identities=16% Similarity=0.083 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH-cc
Q 013299 295 ATRQAKALQALVSAARSTNMR--DLSILYRLSLEYAEQ-----RKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSA-QK 366 (446)
Q Consensus 295 ~~~~~eAl~~~~~al~~~~P~--~~~a~~~lg~~~~~~-----~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~-~g 366 (446)
.+...+|...+++|+ ++||+ +..+|..+|.+|... |+.++|..+|++|++++|+....+++.+|..+.. +|
T Consensus 176 l~~l~~A~a~lerAl-eLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 176 PDTVHAAVMMLERAC-DLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHHHH-HHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTT
T ss_pred HHhHHHHHHHHHHHH-HhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcC
Confidence 456789999999999 99999 777999999999995 9999999999999999997413999999999988 49
Q ss_pred CHHHHHHHHHHHHhhcC
Q 013299 367 RYEDAETILNAALDQTG 383 (446)
Q Consensus 367 ~~~eA~~~~~~al~~~p 383 (446)
++++|..++++|+..+|
T Consensus 255 d~~~a~~~L~kAL~a~p 271 (301)
T 3u64_A 255 NRAGFDEALDRALAIDP 271 (301)
T ss_dssp CHHHHHHHHHHHHHCCG
T ss_pred CHHHHHHHHHHHHcCCC
Confidence 99999999999999887
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=99.09 E-value=2.2e-09 Score=103.57 Aligned_cols=120 Identities=12% Similarity=-0.043 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-------HHHHH-HHHH--HHHhhcCCCCHHHHHHHHHHHHHc
Q 013299 296 TRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRK-------LNAAH-YYAK--MLLKLEGGSNLKGWLLMARILSAQ 365 (446)
Q Consensus 296 ~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~-------~~~A~-~~~~--~al~l~P~~~~~~~~~la~~~~~~ 365 (446)
..+.+|+.+|++|+ +++|+++.++-.++.++..... .-+++ ..++ .++.++|.+ +.++..++.++...
T Consensus 213 ~~~~~A~~l~e~Al-~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~-a~~~~alal~~l~~ 290 (372)
T 3ly7_A 213 KSLNRASELLGEIV-QSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNL-SIIYQIKAVSALVK 290 (372)
T ss_dssp HHHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcC-HHHHHHHHHHHHhC
Confidence 45789999999999 9999999999988888753211 11111 1222 234678888 49999999999999
Q ss_pred cCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Q 013299 366 KRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQV 420 (446)
Q Consensus 366 g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~ 420 (446)
|++++|+..+++|+.++| +...|..+|.++.-.|++++|++.|++++.++|.
T Consensus 291 gd~d~A~~~l~rAl~Ln~---s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~ 342 (372)
T 3ly7_A 291 GKTDESYQAINTGIDLEM---SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG 342 (372)
T ss_dssp TCHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred CCHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 999999999999999998 4678899999999999999999999999999875
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.07 E-value=5.6e-07 Score=91.68 Aligned_cols=357 Identities=10% Similarity=-0.012 Sum_probs=218.9
Q ss_pred HHHHHHHHhhhhcccChHHHHHHHHHHHHHHHhhh----------cCCCCCCCCccccHHHHHHHHHHHhH------HH-
Q 013299 10 LEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSF----------AEGFPENLGADCKLQETLNRAVELLP------EL- 72 (446)
Q Consensus 10 ~~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~----------~~~~~~~~~~~~~l~~~~~~a~~~l~------~~- 72 (446)
+...|.+++..+-.|+++.+...|++++...++.. ..+ +. .-.+...++.|+..+| .+
T Consensus 14 aR~vyer~l~~~P~~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~-~~----~~~i~~~fe~al~~vg~d~~s~~iW 88 (493)
T 2uy1_A 14 PSAIMEHARRLYMSKDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVS-QK----KFKLYEVYEFTLGQFENYWDSYGLY 88 (493)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC---------CTHHHHHHHHHHSTTCTTCHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhC-ch----HHHHHHHHHHHHHHcCCCcccHHHH
Confidence 34556777777777999999999999886421100 000 00 0023344556665433 12
Q ss_pred --HH--------HhCChHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHH
Q 013299 73 --WK--------LADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAI 142 (446)
Q Consensus 73 --~~--------~~g~~~eA~~~y~~al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~ 142 (446)
|. .+|+.+.+-.+|+++|..| +.+...+......+....... . .-.. +-.....+..|.
T Consensus 89 ~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P----~~~~~~lw~~Y~~fE~~~~~~----~-~~~~--~~~~~~~y~~ar 157 (493)
T 2uy1_A 89 KEYIEEEGKIEDEQTRIEKIRNGYMRALQTP----MGSLSELWKDFENFELELNKI----T-GKKI--VGDTLPIFQSSF 157 (493)
T ss_dssp HHHHHHTSSCSSHHHHHHHHHHHHHHHHTSC----CTTHHHHHHHHHHHHHHHCHH----H-HHHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHhchhhhHHHHHHHHHHHHHHhCh----hhhHHHHHHHHHHHHHHhccc----c-HHHH--HHHHhHHHHHHH
Confidence 22 3467788999999999973 222233323332221110000 0 0000 000001122232
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCC---------HHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHH
Q 013299 143 LLLMILLRKVALKRIEWDPSILDHLSFAFSIAGD---------LSSLATQIEELLPGIINRKERYHILALCYYGAGEDLV 213 (446)
Q Consensus 143 ~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~---------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~e 213 (446)
..+... ..... ..+...|...... ..++ .+.....|++++...|.++..|+.++..+...|+.++
T Consensus 158 ~~y~~~--~~~~~--~~s~~~W~~y~~~--E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ 231 (493)
T 2uy1_A 158 QRYQQI--QPLIR--GWSVKNAARLIDL--EMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEK 231 (493)
T ss_dssp HHHHHH--HHHHH--TCSHHHHHHHHHH--HHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHH--HHHHh--hccHHHHHHHHHH--HhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHH
Confidence 222110 01111 1244455443322 2222 3456789999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC--CC------cchhhhHHHHHhhchhHhhh
Q 013299 214 ALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLG--DG------CDQMESTANCLLGISLSAQS 285 (446)
Q Consensus 214 A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~--~~------~~~~~~~a~~~lg~~~~~~~ 285 (446)
|...|++|+ .. |.+...++..+.. ...+ +. ++++.+... .. .......+|.......
T Consensus 232 ar~i~erAi--~~-P~~~~l~~~y~~~--~e~~---~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~---- 296 (493)
T 2uy1_A 232 AKKVVERGI--EM-SDGMFLSLYYGLV--MDEE---AV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYV---- 296 (493)
T ss_dssp HHHHHHHHH--HH-CCSSHHHHHHHHH--TTCT---HH---HHHHHHHTC----------CHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHH--hC-CCcHHHHHHHHhh--cchh---HH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHH----
Confidence 999999999 67 9988766644332 1122 11 333333210 00 0001122333333222
Q ss_pred hhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q 013299 286 KVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQR-KLNAAHYYAKMLLKLEGGSNLKGWLLMARILSA 364 (446)
Q Consensus 286 ~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~-~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~ 364 (446)
.+.+..+.|...|++|. . .+....+|...|.+....+ +.+.|...|+++++..|+.+ ..|...+..+..
T Consensus 297 -------~r~~~~~~AR~i~~~A~-~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~-~~~~~yid~e~~ 366 (493)
T 2uy1_A 297 -------LKKRGLELFRKLFIELG-N-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDST-LLKEEFFLFLLR 366 (493)
T ss_dssp -------HHHHCHHHHHHHHHHHT-T-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHH
T ss_pred -------HHcCCHHHHHHHHHHhh-C-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHH
Confidence 23456889999999984 3 2346777777776666555 69999999999999999985 888888998999
Q ss_pred ccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Q 013299 365 QKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQ 419 (446)
Q Consensus 365 ~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~ 419 (446)
.|+.+.|...|+++ + ....+|..........|+.+.+.+.+++.++-..
T Consensus 367 ~~~~~~aR~l~er~----~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~~~ 415 (493)
T 2uy1_A 367 IGDEENARALFKRL----E--KTSRMWDSMIEYEFMVGSMELFRELVDQKMDAIK 415 (493)
T ss_dssp HTCHHHHHHHHHHS----C--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH----H--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhc
Confidence 99999999999998 4 4677888888888999999999999999998664
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.06 E-value=4.7e-10 Score=114.05 Aligned_cols=146 Identities=12% Similarity=-0.014 Sum_probs=111.8
Q ss_pred HHHHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHH
Q 013299 10 LEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRA 89 (446)
Q Consensus 10 ~~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~a 89 (446)
+.....++..+..+|+|++|+..|+++|++.++.+..++|. ....+..+|.+|..+|++++|+.+|+++
T Consensus 309 a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~-----------~a~~~~nLa~~y~~~g~~~eA~~~~~~a 377 (490)
T 3n71_A 309 SKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLY-----------VLRLLSIASEVLSYLQAYEEASHYARRM 377 (490)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHH-----------HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHH-----------HHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 44566788889999999999999999999987766433343 5678889999999999999999999999
Q ss_pred hCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHH
Q 013299 90 LLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSF 169 (446)
Q Consensus 90 l~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~ 169 (446)
|.+ -- ..+ =...|+-...+++||.
T Consensus 378 L~i----~~-------~~l---------------------------------------------G~~Hp~~a~~l~nLa~ 401 (490)
T 3n71_A 378 VDG----YM-------KLY---------------------------------------------HHNNAQLGMAVMRAGL 401 (490)
T ss_dssp HHH----HH-------HHS---------------------------------------------CTTCHHHHHHHHHHHH
T ss_pred HHH----HH-------HHc---------------------------------------------CCCCHHHHHHHHHHHH
Confidence 986 10 000 0112333446778999
Q ss_pred HHHhcCCHHHHHHHHHhhCCC-----CCCcH---HHHHHHHHHHHHCCChHHHHHHHHHHh
Q 013299 170 AFSIAGDLSSLATQIEELLPG-----IINRK---ERYHILALCYYGAGEDLVALNLLRTLL 222 (446)
Q Consensus 170 ~l~~~~~~~~A~~~~~~al~~-----~p~~~---~~~~~lg~~~~~~g~~~eA~~~~~~al 222 (446)
+|..+|++++|+..|++|+++ .|++| +...+|+.++..+|++++|+..|+++.
T Consensus 402 ~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~ 462 (490)
T 3n71_A 402 TNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMR 462 (490)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998888754 45554 455678888888888888888888766
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.06 E-value=3.1e-10 Score=88.59 Aligned_cols=79 Identities=18% Similarity=0.040 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHH
Q 013299 295 ATRQAKALQALVSAARSTNMRDLS-ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAET 373 (446)
Q Consensus 295 ~~~~~eAl~~~~~al~~~~P~~~~-a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~ 373 (446)
.|++++|+..|++++ +.+|+++. +++++|.++..+|++++|+..|+++++++|+++ .++.. +.+.+++.
T Consensus 13 ~~~~~~A~~~~~~al-~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~--------~~~~~a~~ 82 (99)
T 2kc7_A 13 QGDIENALQALEEFL-QTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSP-ALQAR--------KMVMDILN 82 (99)
T ss_dssp HTCHHHHHHHHHHHH-HHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST-HHHHH--------HHHHHHHH
T ss_pred cCCHHHHHHHHHHHH-HHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH-HHHHH--------HHHHHHHH
Confidence 467899999999999 99999999 999999999999999999999999999999995 87754 78899999
Q ss_pred HHHHHHhhcC
Q 013299 374 ILNAALDQTG 383 (446)
Q Consensus 374 ~~~~al~~~p 383 (446)
.|++++..+|
T Consensus 83 ~~~~~~~~~p 92 (99)
T 2kc7_A 83 FYNKDMYNQL 92 (99)
T ss_dssp HHCCTTHHHH
T ss_pred HHHHHhccCc
Confidence 9999998888
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=99.02 E-value=6.7e-09 Score=100.26 Aligned_cols=157 Identities=11% Similarity=0.012 Sum_probs=109.3
Q ss_pred hCCCCCCcHHHHH--HHHHHHHHCCC---hHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 013299 187 LLPGIINRKERYH--ILALCYYGAGE---DLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALEC 261 (446)
Q Consensus 187 al~~~p~~~~~~~--~lg~~~~~~g~---~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~ 261 (446)
+...-|.++++|- ..|..++..+. ..+|+.+|++|+ +++|+++.++..++..+.. ...
T Consensus 186 ~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al--~lDP~~a~A~A~la~a~~~---------------~~~ 248 (372)
T 3ly7_A 186 LQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIV--QSSPEFTYARAEKALVDIV---------------RHS 248 (372)
T ss_dssp HHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHH---------------HHH
T ss_pred HhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHH---------------Hhc
Confidence 3334455555543 34566555443 367888888888 7888888777654432210 000
Q ss_pred cCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013299 262 LGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAK 341 (446)
Q Consensus 262 ~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~ 341 (446)
..+... ........++.. ..++ ..+|.++.++..+|.++...|++++|+..++
T Consensus 249 ~~~~~~-------------------------~~~~~l~~a~~a-~~a~-~~~~~~a~~~~alal~~l~~gd~d~A~~~l~ 301 (372)
T 3ly7_A 249 QHPLDE-------------------------KQLAALNTEIDN-IVTL-PELNNLSIIYQIKAVSALVKGKTDESYQAIN 301 (372)
T ss_dssp HSCCCH-------------------------HHHHHHHHHHHH-HHTC-GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cCCCch-------------------------hhHHHHHHHHHH-HHhc-ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 111100 001112334442 2456 7889999999999999999999999999999
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHH
Q 013299 342 MLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELL 391 (446)
Q Consensus 342 ~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 391 (446)
+|+.++|+ +.+|..+|.++...|++++|++.|++|+.++| .....+
T Consensus 302 rAl~Ln~s--~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P--~~~t~~ 347 (372)
T 3ly7_A 302 TGIDLEMS--WLNYVLLGKVYEMKGMNREAADAYLTAFNLRP--GANTLY 347 (372)
T ss_dssp HHHHHCCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC--SHHHHH
T ss_pred HHHhcCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--CcChHH
Confidence 99999985 48999999999999999999999999999999 555433
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.01 E-value=7.6e-09 Score=86.59 Aligned_cols=111 Identities=20% Similarity=0.072 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH----ccCHHHH
Q 013299 296 TRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSA----QKRYEDA 371 (446)
Q Consensus 296 ~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~----~g~~~eA 371 (446)
+++++|+.+|+++. +..+..+ . ||.+|...+.+++|+.+|++|... ++ ..+++++|.++.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa-~~g~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~-~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKAC-ELNEMFG--C--LSLVSNSQINKQKLFQYLSKACEL--NS-GNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHH-HTTCTTH--H--HHHHTCTTSCHHHHHHHHHHHHHT--TC-HHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHH-cCCCHhh--h--HHHHHHcCCCHHHHHHHHHHHHcC--CC-HHHHHHHHHHHHcCCCCCccHHHH
Confidence 56899999999999 8874444 4 999999999999999999999886 56 5999999999999 8999999
Q ss_pred HHHHHHHHhhcCCCCcHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHH
Q 013299 372 ETILNAALDQTGKWEQGELLRTKAKVQLV----QGQLKGAVETYTHLLAAL 418 (446)
Q Consensus 372 ~~~~~~al~~~p~~~~~~~~~~~a~~~~~----~g~~~eA~~~~~~~l~l~ 418 (446)
+.+|++|.+. .++.+++++|.++.. .+++++|+..|+++.+.-
T Consensus 81 ~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGL----NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcC----CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 9999999875 478999999999999 999999999999998863
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.01 E-value=3.1e-08 Score=101.05 Aligned_cols=122 Identities=6% Similarity=-0.099 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHH----------------
Q 013299 298 QAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARI---------------- 361 (446)
Q Consensus 298 ~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~---------------- 361 (446)
.+.....|++++ ...|+++..|+..+..+...|+.++|...|++|+.. |.+. ..|...+..
T Consensus 195 ~~Rv~~~ye~al-~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~-~l~~~y~~~~e~~~~~~~l~~~~~~ 271 (493)
T 2uy1_A 195 ESRMHFIHNYIL-DSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGM-FLSLYYGLVMDEEAVYGDLKRKYSM 271 (493)
T ss_dssp HHHHHHHHHHHH-HHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSS-HHHHHHHHHTTCTHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcH-HHHHHHHhhcchhHHHHHHHHHHHh
Confidence 345678999999 999999999999999999999999999999999999 9873 555544432
Q ss_pred ------------------------HHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhC-CHHHHHHHHHHHHH
Q 013299 362 ------------------------LSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQG-QLKGAVETYTHLLA 416 (446)
Q Consensus 362 ------------------------~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g-~~~eA~~~~~~~l~ 416 (446)
+...|..+.|...|++| . .|. ....+|...|.+....| +++.|...|+.+++
T Consensus 272 ~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~-~~~-~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~ 348 (493)
T 2uy1_A 272 GEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G-NEG-VGPHVFIYCAFIEYYATGSRATPYNIFSSGLL 348 (493)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T-TSC-CCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHH
T ss_pred hccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h-CCC-CChHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 23467788899999999 4 442 35667777777777766 59999999999999
Q ss_pred HHhhhhhhc
Q 013299 417 ALQVQTKTF 425 (446)
Q Consensus 417 l~~~~~~~~ 425 (446)
..|+.++.+
T Consensus 349 ~~~~~~~~~ 357 (493)
T 2uy1_A 349 KHPDSTLLK 357 (493)
T ss_dssp HCTTCHHHH
T ss_pred HCCCCHHHH
Confidence 877655443
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=2.4e-09 Score=99.35 Aligned_cols=113 Identities=16% Similarity=0.103 Sum_probs=97.9
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHH---c--C------CHHHHHHHHHHHHhhcCC--CCHHHHHHHHHHHHHc-----cC
Q 013299 306 VSAARSTNMRDLSILYRLSLEYAE---Q--R------KLNAAHYYAKMLLKLEGG--SNLKGWLLMARILSAQ-----KR 367 (446)
Q Consensus 306 ~~al~~~~P~~~~a~~~lg~~~~~---~--~------~~~~A~~~~~~al~l~P~--~~~~~~~~la~~~~~~-----g~ 367 (446)
.+++.+.+|+++++++..|.+... . | ....|..++++|++++|+ + ..+|..+|.+|... |+
T Consensus 141 ~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~-GsA~~~LG~lY~~vPp~~gGd 219 (301)
T 3u64_A 141 HKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQE-GAVWNVLTKFYAAAPESFGGG 219 (301)
T ss_dssp HHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHH-HHHHHHHHHHHHHSCTTTTCC
T ss_pred HHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCccc-CHHHHHHHHHHHhCCCccCCC
Confidence 344437899999999999888754 1 2 357899999999999999 5 37999999999995 99
Q ss_pred HHHHHHHHHHHHhhcCCCCc-HHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHhhh
Q 013299 368 YEDAETILNAALDQTGKWEQ-GELLRTKAKVQLV-QGQLKGAVETYTHLLAALQVQ 421 (446)
Q Consensus 368 ~~eA~~~~~~al~~~p~~~~-~~~~~~~a~~~~~-~g~~~eA~~~~~~~l~l~~~~ 421 (446)
.++|..+|++|++++| +. ...++..|..+.. +|++++|.+.+++++...|..
T Consensus 220 ~ekA~~~ferAL~LnP--~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 220 MEKAHTAFEHLTRYCS--AHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHHHHHHHCC--TTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHHHHHHHHhCC--CCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 9999999999999999 64 9999999999988 599999999999999988753
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.99 E-value=9.7e-09 Score=85.93 Aligned_cols=120 Identities=17% Similarity=0.075 Sum_probs=98.8
Q ss_pred CCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 013299 246 DLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSL 325 (446)
Q Consensus 246 ~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~ 325 (446)
+++++|+.+|+++.+.-++ .+. +|.+|... +..++|+.+|+++. +. .++.++++||.
T Consensus 9 ~d~~~A~~~~~~aa~~g~~-------~a~--lg~~y~~g-----------~~~~~A~~~~~~Aa-~~--g~~~a~~~Lg~ 65 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEM-------FGC--LSLVSNSQ-----------INKQKLFQYLSKAC-EL--NSGNGCRFLGD 65 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCT-------THH--HHHHTCTT-----------SCHHHHHHHHHHHH-HT--TCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCH-------hhh--HHHHHHcC-----------CCHHHHHHHHHHHH-cC--CCHHHHHHHHH
Confidence 3678999999999985322 234 88887653 24567999999999 76 89999999999
Q ss_pred HHHH----cCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhhcCCCCcHHHHHHHH
Q 013299 326 EYAE----QRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSA----QKRYEDAETILNAALDQTGKWEQGELLRTKA 395 (446)
Q Consensus 326 ~~~~----~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a 395 (446)
+|.. .+++++|+.+|++|.+. ++ ..++++||.++.. .+++++|+.+|++|.+.. +..+.++++
T Consensus 66 ~y~~G~g~~~d~~~A~~~~~~Aa~~--g~-~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g----~~~A~~~l~ 136 (138)
T 1klx_A 66 FYENGKYVKKDLRKAAQYYSKACGL--ND-QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG----SEDACGILN 136 (138)
T ss_dssp HHHHCSSSCCCHHHHHHHHHHHHHT--TC-HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHC-
T ss_pred HHHcCCCCCccHHHHHHHHHHHHcC--CC-HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC----CHHHHHHHh
Confidence 9999 89999999999999886 56 4999999999999 999999999999999874 445555544
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.95 E-value=1.9e-09 Score=109.57 Aligned_cols=128 Identities=9% Similarity=-0.014 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHHHHHhh-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----cCCCC--HHHHHHHH
Q 013299 295 ATRQAKALQALVSAARST-----NMRDL---SILYRLSLEYAEQRKLNAAHYYAKMLLKL-----EGGSN--LKGWLLMA 359 (446)
Q Consensus 295 ~~~~~eAl~~~~~al~~~-----~P~~~---~a~~~lg~~~~~~~~~~~A~~~~~~al~l-----~P~~~--~~~~~~la 359 (446)
+|++++|+..+++++ ++ .|+++ .++.+||.+|..+|++++|+.++++++++ -|++| +..+++||
T Consensus 322 qg~~~eA~~l~~~aL-~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 400 (490)
T 3n71_A 322 EGLYHEVVKLCRECL-EKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAG 400 (490)
T ss_dssp TTCHHHHHHHHHHHH-HHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-HHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 467899999999998 74 46665 56789999999999999999999999986 36664 25688999
Q ss_pred HHHHHccCHHHHHHHHHHHHhh-----cCCCCc---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhc
Q 013299 360 RILSAQKRYEDAETILNAALDQ-----TGKWEQ---GELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTF 425 (446)
Q Consensus 360 ~~~~~~g~~~eA~~~~~~al~~-----~p~~~~---~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~~ 425 (446)
.+|..+|+|++|+..+++|+++ -| ++ .+...+++.++.++|++++|...|+++.+-.-++.+.|
T Consensus 401 ~~~~~~G~~~eA~~~~~~Al~i~~~~lG~--~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~~~~~ 472 (490)
T 3n71_A 401 LTNWHAGHIEVGHGMICKAYAILLVTHGP--SHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNNQPMQ 472 (490)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCT--TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 9999999999999999999965 35 44 45567899999999999999999999988664444433
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.90 E-value=9.6e-09 Score=79.76 Aligned_cols=70 Identities=17% Similarity=0.057 Sum_probs=66.6
Q ss_pred CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013299 313 NMRDLSILYRLSLEYAEQRK---LNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTG 383 (446)
Q Consensus 313 ~P~~~~a~~~lg~~~~~~~~---~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 383 (446)
+|+|++++..+|.+++..++ .++|...+++|++++|++ ..+++.+|.+++..|+|++|+.+++++++.+|
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~-~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYN-EAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 79999999999999987665 799999999999999999 59999999999999999999999999999999
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.89 E-value=1.8e-08 Score=84.74 Aligned_cols=100 Identities=11% Similarity=0.029 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhc-C-CCCHHHHHHHHHHHHHccCHHH
Q 013299 296 TRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQR---KLNAAHYYAKMLLKLE-G-GSNLKGWLLMARILSAQKRYED 370 (446)
Q Consensus 296 ~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~---~~~~A~~~~~~al~l~-P-~~~~~~~~~la~~~~~~g~~~e 370 (446)
+....+.+.|.+.+ ..+|.+.++.|++|+++...+ +.++++.+++..++.+ | ++ .++++++|..++++|+|++
T Consensus 12 ~~l~~~~~~y~~e~-~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~-rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 12 EDLLKFEKKFQSEK-AAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQ-RDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHH-HTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHH-HHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHH-ccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccch-HHHHHHHHHHHHHccCHHH
Confidence 35678888999999 999999999999999999988 7779999999999999 8 45 5999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCcHHHHHHHHHHHH
Q 013299 371 AETILNAALDQTGKWEQGELLRTKAKVQL 399 (446)
Q Consensus 371 A~~~~~~al~~~p~~~~~~~~~~~a~~~~ 399 (446)
|..+++++|+..| +|..+...+-.+..
T Consensus 90 A~~y~~~lL~ieP--~n~QA~~Lk~~ie~ 116 (152)
T 1pc2_A 90 ALKYVRGLLQTEP--QNNQAKELERLIDK 116 (152)
T ss_dssp HHHHHHHHHHHCT--TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC--CCHHHHHHHHHHHH
Confidence 9999999999999 88888777655443
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.9e-08 Score=78.12 Aligned_cols=74 Identities=11% Similarity=-0.027 Sum_probs=67.3
Q ss_pred CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChH
Q 013299 157 IEWDPSILDHLSFAFSIAGD---LSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLP 232 (446)
Q Consensus 157 ~p~~~~~~~~lg~~l~~~~~---~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~ 232 (446)
+|++++++..+|.++...++ .++|...++++++++|+++.+++.+|..++..|+|++|+..+++++ ..+|.++.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l--~~~p~~~~ 78 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLL--DSNDPNLD 78 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--TCCCTTCC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--hhCCCCcc
Confidence 58999999999999986665 6999999999999999999999999999999999999999999999 88888554
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.51 E-value=6.6e-07 Score=75.18 Aligned_cols=99 Identities=11% Similarity=-0.011 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhC-C-CCHHHHHHHHHH
Q 013299 249 EEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTN-M-RDLSILYRLSLE 326 (446)
Q Consensus 249 ~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~-P-~~~~a~~~lg~~ 326 (446)
..+...|.+.++..+++ ..+.+.+|.++.... ...+.++++..++.++ +.+ | ++.+++|+||..
T Consensus 15 ~~~~~~y~~e~~~~~~~-----~~~~F~ya~~Lv~S~--------~~~~~~~gI~lLe~ll-~~~~p~~~rd~lY~LAv~ 80 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGSVS-----KSTQFEYAWCLVRSK--------YNDDIRKGIVLLEELL-PKGSKEEQRDYVFYLAVG 80 (152)
T ss_dssp HHHHHHHHHHHHTTCCC-----HHHHHHHHHHHHTCS--------SHHHHHHHHHHHHHHH-HHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCc-----HHHHHHHHHHHHcCC--------CHHHHHHHHHHHHHHH-hcCCccchHHHHHHHHHH
Confidence 34555666666633322 578888888886532 1346789999999999 888 7 679999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Q 013299 327 YAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARIL 362 (446)
Q Consensus 327 ~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~ 362 (446)
+++.|+|++|+.+++++++++|++ ..+......+-
T Consensus 81 ~~kl~~Y~~A~~y~~~lL~ieP~n-~QA~~Lk~~ie 115 (152)
T 1pc2_A 81 NYRLKEYEKALKYVRGLLQTEPQN-NQAKELERLID 115 (152)
T ss_dssp HHHTSCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHH
Confidence 999999999999999999999999 48777655543
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=3.5e-07 Score=91.34 Aligned_cols=93 Identities=13% Similarity=0.135 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHHhh-----CCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhh-----cCCCC--HHHHHHHHH
Q 013299 296 TRQAKALQALVSAARST-----NMRDLS---ILYRLSLEYAEQRKLNAAHYYAKMLLKL-----EGGSN--LKGWLLMAR 360 (446)
Q Consensus 296 ~~~~eAl~~~~~al~~~-----~P~~~~---a~~~lg~~~~~~~~~~~A~~~~~~al~l-----~P~~~--~~~~~~la~ 360 (446)
|++++|+..|++++ ++ .|+++. ++.+||.+|..+|++++|+.++++++++ -|++| +..+++||.
T Consensus 312 g~~~eA~~~~~~~L-~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 312 KSPSELLEICELSQ-EKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp SCHHHHHHHHHHHH-HHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH-HHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 46789999999988 74 577764 5689999999999999999999999876 35553 246889999
Q ss_pred HHHHccCHHHHHHHHHHHHhhc-----CCCCcHHHH
Q 013299 361 ILSAQKRYEDAETILNAALDQT-----GKWEQGELL 391 (446)
Q Consensus 361 ~~~~~g~~~eA~~~~~~al~~~-----p~~~~~~~~ 391 (446)
+|..+|+|++|+..|++|+++. | +++...
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~--~Hp~~~ 424 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEVAHGK--DHPYIS 424 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCT--TCHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHcCC--CChHHH
Confidence 9999999999999999998753 5 665543
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.47 E-value=1.7e-06 Score=68.23 Aligned_cols=77 Identities=8% Similarity=-0.020 Sum_probs=66.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc-------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcH
Q 013299 316 DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLE-------GGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQG 388 (446)
Q Consensus 316 ~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~-------P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 388 (446)
++.-.+.+|..+...|+++.|+..|++|+... +.. ..++..+|.++..+|++++|+.++++++++.| ++.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~-~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P--~~~ 80 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDK-VSVLDYLSYAVYQQGDLDKALLLTKKLLELDP--EHQ 80 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccH-HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC--CCH
Confidence 45667899999999999999999999999874 233 47899999999999999999999999999999 888
Q ss_pred HHHHHHH
Q 013299 389 ELLRTKA 395 (446)
Q Consensus 389 ~~~~~~a 395 (446)
.+..+++
T Consensus 81 ~~~~n~~ 87 (104)
T 2v5f_A 81 RANGNLK 87 (104)
T ss_dssp HHHHHHH
T ss_pred HHHhhHH
Confidence 8877765
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.46 E-value=6.4e-07 Score=70.78 Aligned_cols=76 Identities=21% Similarity=0.108 Sum_probs=68.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhhCCC-------CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChH
Q 013299 160 DPSILDHLSFAFSIAGDLSSLATQIEELLPG-------IINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLP 232 (446)
Q Consensus 160 ~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~-------~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~ 232 (446)
++.-.+.+|..+...|++..|+..|++|++. .+..++++.+||.+++.+|++++|+..+++++ .++|+++.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al--~l~P~~~~ 81 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL--ELDPEHQR 81 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHH--hcCCCCHH
Confidence 4567789999999999999999999999975 35678999999999999999999999999999 89999988
Q ss_pred HHHHH
Q 013299 233 ALLIA 237 (446)
Q Consensus 233 a~~~~ 237 (446)
+..++
T Consensus 82 ~~~n~ 86 (104)
T 2v5f_A 82 ANGNL 86 (104)
T ss_dssp HHHHH
T ss_pred HHhhH
Confidence 76544
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=4.5e-07 Score=90.58 Aligned_cols=92 Identities=7% Similarity=-0.011 Sum_probs=77.5
Q ss_pred HcCCHHHHHHHHHHHHhh-----cCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHhhc-----CC-CCcHHHHHHHH
Q 013299 329 EQRKLNAAHYYAKMLLKL-----EGGSN--LKGWLLMARILSAQKRYEDAETILNAALDQT-----GK-WEQGELLRTKA 395 (446)
Q Consensus 329 ~~~~~~~A~~~~~~al~l-----~P~~~--~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-----p~-~~~~~~~~~~a 395 (446)
..|++++|+.+|++++++ .|+|+ +..+.++|.+|..+|+|++|+.+++++++.. |+ ++-...++++|
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 358999999999999985 46663 2568899999999999999999999999652 30 03356689999
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHhh
Q 013299 396 KVQLVQGQLKGAVETYTHLLAALQV 420 (446)
Q Consensus 396 ~~~~~~g~~~eA~~~~~~~l~l~~~ 420 (446)
.++..+|++++|+..|++++++...
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~ 414 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEV 414 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999854
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=98.34 E-value=5.5e-06 Score=67.07 Aligned_cols=101 Identities=12% Similarity=0.016 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHhhc-CCCCHHHHHHHHHHHHHccCHHHH
Q 013299 296 TRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNA---AHYYAKMLLKLE-GGSNLKGWLLMARILSAQKRYEDA 371 (446)
Q Consensus 296 ~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~---A~~~~~~al~l~-P~~~~~~~~~la~~~~~~g~~~eA 371 (446)
.....+...|.+.+ ..++.+.++.|++|+++...++..+ ++.+++..+..+ |...-++++.+|..++++|+|++|
T Consensus 15 ~~l~~~~~~y~~e~-~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 15 EDLLKFEKKFQSEK-AAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHH-HHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHh-ccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 34667888899999 8899999999999999999887777 999999999987 632258999999999999999999
Q ss_pred HHHHHHHHhhcCCCCcHHHHHHHHHHHH
Q 013299 372 ETILNAALDQTGKWEQGELLRTKAKVQL 399 (446)
Q Consensus 372 ~~~~~~al~~~p~~~~~~~~~~~a~~~~ 399 (446)
..+++..|+..| +|..+...+..+..
T Consensus 94 ~~~~~~lL~~eP--~n~QA~~Lk~~i~~ 119 (126)
T 1nzn_A 94 LKYVRGLLQTEP--QNNQAKELERLIDK 119 (126)
T ss_dssp HHHHHHHHHHCT--TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC--CCHHHHHHHHHHHH
Confidence 999999999999 88888777655543
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=2.9e-06 Score=84.68 Aligned_cols=110 Identities=13% Similarity=0.047 Sum_probs=84.1
Q ss_pred HHHHcCCHHHHHHHHHHHHhh-----cCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHhhc----CCCCc---HHHH
Q 013299 326 EYAEQRKLNAAHYYAKMLLKL-----EGGSN--LKGWLLMARILSAQKRYEDAETILNAALDQT----GKWEQ---GELL 391 (446)
Q Consensus 326 ~~~~~~~~~~A~~~~~~al~l-----~P~~~--~~~~~~la~~~~~~g~~~eA~~~~~~al~~~----p~~~~---~~~~ 391 (446)
-+..+|++++|+..+++++++ .|+|+ +..+.++|.++..+|+|++|+.+++++++.. |. ++ ...+
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~-~Hp~~a~~l 374 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPG-SHPVRGVQV 374 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCS-SCHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCC-CChHHHHHH
Confidence 355689999999999999975 45553 2568899999999999999999999999652 21 33 5568
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhccCCcchhhHHhhh
Q 013299 392 RTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKVYFMR 438 (446)
Q Consensus 392 ~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~ 438 (446)
+++|.++..+|++++|+..|++++++..... ...+|.--.++-+.
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~l--G~~Hp~~~~~~~~l 419 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDIMRVTH--GREHSLIEDLILLL 419 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CTTSHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc--CCCChHHHHHHHHH
Confidence 8999999999999999999999999985422 22345444444443
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=1.3e-06 Score=87.18 Aligned_cols=87 Identities=14% Similarity=0.069 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHHHHhh-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhc-----CCCC--HHHHHHH
Q 013299 294 RATRQAKALQALVSAARST-----NMRDL---SILYRLSLEYAEQRKLNAAHYYAKMLLKLE-----GGSN--LKGWLLM 358 (446)
Q Consensus 294 ~~~~~~eAl~~~~~al~~~-----~P~~~---~a~~~lg~~~~~~~~~~~A~~~~~~al~l~-----P~~~--~~~~~~l 358 (446)
..|++++|+..+++++ ++ .|+++ .++.+||.+|..+|++++|+.++++++.+. |++| +..+++|
T Consensus 299 ~~g~~~~a~~~~~~~L-~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nL 377 (429)
T 3qwp_A 299 AHWKWEQVLAMCQAII-SSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKV 377 (429)
T ss_dssp HTTCHHHHHHHHHHHH-TCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHH-HhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHH
Confidence 3567899999999999 75 46676 467899999999999999999999999763 6664 2468899
Q ss_pred HHHHHHccCHHHHHHHHHHHHhh
Q 013299 359 ARILSAQKRYEDAETILNAALDQ 381 (446)
Q Consensus 359 a~~~~~~g~~~eA~~~~~~al~~ 381 (446)
|.++..+|++++|+..+++|+++
T Consensus 378 a~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 378 GKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999965
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=97.98 E-value=0.0011 Score=67.36 Aligned_cols=116 Identities=8% Similarity=0.002 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--cCCCCHHHHHHHHHHHHHccCHHHHH
Q 013299 296 TRQAKALQALVSAARSTN-MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKL--EGGSNLKGWLLMARILSAQKRYEDAE 372 (446)
Q Consensus 296 ~~~~eAl~~~~~al~~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~~~la~~~~~~g~~~eA~ 372 (446)
+..++|.+.|++.. +.. +-|..++..+-..+.+.|++++|+..|++.... .|+ ...|..+-..+...|+.++|.
T Consensus 84 ~~l~~A~~lf~~M~-~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd--~~tyn~lI~~~~~~g~~~~A~ 160 (501)
T 4g26_A 84 PGLSRGFDIFKQMI-VDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPR--LRSYGPALFGFCRKGDADKAY 160 (501)
T ss_dssp HHHHHHHHHHHHHH-HTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC--HHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHH-HhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc--cceehHHHHHHHHCCCHHHHH
Confidence 45788999999888 543 447889999999999999999999999998764 566 488999999999999999999
Q ss_pred HHHHHHHhh--cCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 013299 373 TILNAALDQ--TGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAA 417 (446)
Q Consensus 373 ~~~~~al~~--~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l 417 (446)
..+++..+. .| +...|..+-..+.+.|+.++|.+.+++.-+.
T Consensus 161 ~l~~~M~~~G~~P---d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 161 EVDAHMVESEVVP---EEPELAALLKVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp HHHHHHHHTTCCC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCC---CHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence 999999865 46 6678888999999999999999999987553
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00077 Score=55.35 Aligned_cols=96 Identities=8% Similarity=0.038 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHH
Q 013299 299 AKALQALVSAARSTNMRDLSILYRLSLEYAEQRKL---NAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETIL 375 (446)
Q Consensus 299 ~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~---~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~ 375 (446)
......|.+-. .++-.+++.|++|+++....+. .+++.+++..+..+|...-++++.+|..+.++|+|++|..++
T Consensus 23 ~~lr~qY~~E~--~~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~ 100 (144)
T 1y8m_A 23 EILRQQVVSEG--GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYV 100 (144)
T ss_dssp HHHHHHHHHTT--STTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHhc--cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHH
Confidence 33444444322 2467899999999999998744 579999999999999654689999999999999999999999
Q ss_pred HHHHhhcCCCCcHHHHHHHHHHH
Q 013299 376 NAALDQTGKWEQGELLRTKAKVQ 398 (446)
Q Consensus 376 ~~al~~~p~~~~~~~~~~~a~~~ 398 (446)
+..|+..| +|..+...+..+.
T Consensus 101 d~lL~~eP--~n~QA~~Lk~~Ie 121 (144)
T 1y8m_A 101 DTLFEHER--NNKQVGALKSMVE 121 (144)
T ss_dssp HHHHHTCC--CCHHHHHHHHHHH
T ss_pred HHHHhcCC--CcHHHHHHHHHHH
Confidence 99999999 8888777665544
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00013 Score=59.08 Aligned_cols=81 Identities=21% Similarity=0.138 Sum_probs=72.8
Q ss_pred hhcCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHhhCCCC-C-CcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCC
Q 013299 154 LKRIEWDPSILDHLSFAFSIAGDLSS---LATQIEELLPGI-I-NRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDP 228 (446)
Q Consensus 154 l~~~p~~~~~~~~lg~~l~~~~~~~~---A~~~~~~al~~~-p-~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P 228 (446)
....+.+.++-+++|.++...++... ++..++..+..+ | ..-+..|.||..+++.|+|++|+..++..| +.+|
T Consensus 28 ~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL--~~eP 105 (126)
T 1nzn_A 28 KAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLL--QTEP 105 (126)
T ss_dssp HHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCT
T ss_pred hccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HhCC
Confidence 45567899999999999999987766 999999999988 5 678999999999999999999999999999 8999
Q ss_pred CChHHHHH
Q 013299 229 KCLPALLI 236 (446)
Q Consensus 229 ~~~~a~~~ 236 (446)
+|..+..+
T Consensus 106 ~n~QA~~L 113 (126)
T 1nzn_A 106 QNNQAKEL 113 (126)
T ss_dssp TCHHHHHH
T ss_pred CCHHHHHH
Confidence 99987654
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00021 Score=58.02 Aligned_cols=83 Identities=6% Similarity=0.014 Sum_probs=71.5
Q ss_pred CHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHH
Q 013299 316 DLSILYRLSLEYAEQRKL---NAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLR 392 (446)
Q Consensus 316 ~~~a~~~lg~~~~~~~~~---~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~ 392 (446)
.+++.|++|+++....+. .+++.++...+..+|...-++++.+|..+.++|+|++|..+++..|+..| +|..+..
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP--~N~QA~~ 116 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER--NNKQVGA 116 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCT--TCHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCC--CCHHHHH
Confidence 679999999999987644 56999999999999965358999999999999999999999999999999 8888877
Q ss_pred HHHHHHHH
Q 013299 393 TKAKVQLV 400 (446)
Q Consensus 393 ~~a~~~~~ 400 (446)
.+..+..+
T Consensus 117 Lk~~Ie~k 124 (134)
T 3o48_A 117 LKSMVEDK 124 (134)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76655543
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=97.65 E-value=0.0041 Score=63.13 Aligned_cols=161 Identities=9% Similarity=-0.052 Sum_probs=101.5
Q ss_pred HHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHc-CCCcchhhh
Q 013299 201 LALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGE--------YPDLAEEGATFASRALECL-GDGCDQMES 271 (446)
Q Consensus 201 lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~--------~~~~~~eA~~~~~~al~~~-~~~~~~~~~ 271 (446)
+-..+.+.|+.++|+..|++.......|+.. .+..+...|.. ..+..++|...|++..+.- .|+ .
T Consensus 32 ~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~-tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd-----~ 105 (501)
T 4g26_A 32 KLDMCSKKGDVLEALRLYDEARRNGVQLSQY-HYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPN-----E 105 (501)
T ss_dssp HHHHTTTSCCHHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCC-----H
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHh-HHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCC-----H
Confidence 3344555666666666666655323445432 23323223221 1223567777777766531 222 2
Q ss_pred HHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--cC
Q 013299 272 TANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTN-MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKL--EG 348 (446)
Q Consensus 272 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l--~P 348 (446)
..|..+-.+|.+ .|+.++|+..|++.. +.. +-|..++..+-..|.+.|+.++|...|++..+. .|
T Consensus 106 ~tyn~lI~~~~~-----------~g~~~~A~~l~~~M~-~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~P 173 (501)
T 4g26_A 106 ATFTNGARLAVA-----------KDDPEMAFDMVKQMK-AFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVP 173 (501)
T ss_dssp HHHHHHHHHHHH-----------HTCHHHHHHHHHHHH-HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHh-----------cCCHHHHHHHHHHHH-HcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 344444444433 356788888888877 543 446777888888888888888888888887664 45
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 013299 349 GSNLKGWLLMARILSAQKRYEDAETILNAALDQ 381 (446)
Q Consensus 349 ~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 381 (446)
+ ...|..+-..+.+.|+.++|..++++.-+.
T Consensus 174 d--~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 174 E--EPELAALLKVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp C--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred C--HHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence 5 377888888888888888888888887653
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00059 Score=56.46 Aligned_cols=107 Identities=13% Similarity=0.025 Sum_probs=89.4
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCH------HHHHHHHHHHHhhcCCCC-------HHHHHHHHHHHHHccCHHHHHHHHHH
Q 013299 311 STNMRDLSILYRLSLEYAEQRKL------NAAHYYAKMLLKLEGGSN-------LKGWLLMARILSAQKRYEDAETILNA 377 (446)
Q Consensus 311 ~~~P~~~~a~~~lg~~~~~~~~~------~~A~~~~~~al~l~P~~~-------~~~~~~la~~~~~~g~~~eA~~~~~~ 377 (446)
-+.|+|++.|......+...|+. +.-+..|++|+..-|-.. ...|...|.. ...++.++|.+.|+.
T Consensus 7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~ 85 (161)
T 4h7y_A 7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQM 85 (161)
T ss_dssp ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHH
T ss_pred eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHH
Confidence 36899999999999998888998 888899999999777521 2456666755 566999999999999
Q ss_pred HHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Q 013299 378 ALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQV 420 (446)
Q Consensus 378 al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~ 420 (446)
+++... ..+.+|...|....++|+.+.|...+.+++.+.|+
T Consensus 86 a~~~hK--kFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 86 ARANCK--KFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HHHHCT--TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHHhH--HHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 999855 67999999999999999999999999999998864
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=97.55 E-value=0.0013 Score=54.37 Aligned_cols=54 Identities=6% Similarity=-0.077 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Q 013299 296 TRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS 350 (446)
Q Consensus 296 ~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~ 350 (446)
++.++|.+.|+.++ .++...+.+|...|..-.++|++..|.+.+.+|+.+.|..
T Consensus 74 ~D~d~aR~vy~~a~-~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 74 QEPDDARDYFQMAR-ANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HCGGGCHHHHHHHH-HHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred cCHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 56678888888888 7888888888888888888888888888888888888874
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0017 Score=54.79 Aligned_cols=27 Identities=22% Similarity=0.046 Sum_probs=24.0
Q ss_pred cHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 013299 387 QGELLRTKAKVQLVQGQLKGAVETYTH 413 (446)
Q Consensus 387 ~~~~~~~~a~~~~~~g~~~eA~~~~~~ 413 (446)
..++.|.++.|+.++|++++|+..++.
T Consensus 121 e~Elkykia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 121 EIEVKYKLAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 458899999999999999999998763
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=97.22 E-value=0.002 Score=52.23 Aligned_cols=82 Identities=12% Similarity=0.104 Sum_probs=66.5
Q ss_pred hHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 013299 271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMR-DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG 349 (446)
Q Consensus 271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~ 349 (446)
..+.+.++.++.... ...+..+++..++..+ +.+|. .-+.+|.||..+++.|+|++|..+.+..++.+|+
T Consensus 40 ~qt~F~yAw~Lv~S~--------~~~d~~~GI~LLe~l~-~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~ 110 (134)
T 3o48_A 40 IQSRFNYAWGLIKST--------DVNDERLGVKILTDIY-KEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 110 (134)
T ss_dssp HHHHHHHHHHHHHSS--------CHHHHHHHHHHHHHHH-HHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred hhhHHHHHHHHHcCC--------CHHHHHHHHHHHHHHH-hcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 456677776664432 1346789999999999 89994 5889999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHH
Q 013299 350 SNLKGWLLMARIL 362 (446)
Q Consensus 350 ~~~~~~~~la~~~ 362 (446)
+. .+......|-
T Consensus 111 N~-QA~~Lk~~Ie 122 (134)
T 3o48_A 111 NK-QVGALKSMVE 122 (134)
T ss_dssp CH-HHHHHHHHHH
T ss_pred CH-HHHHHHHHHH
Confidence 94 8777665554
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0013 Score=55.55 Aligned_cols=100 Identities=12% Similarity=0.033 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCH---------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC---CCC-----------
Q 013299 295 ATRQAKALQALVSAARSTNMRDL---------SILYRLSLEYAEQRKLNAAHYYAKMLLKLEG---GSN----------- 351 (446)
Q Consensus 295 ~~~~~eAl~~~~~al~~~~P~~~---------~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P---~~~----------- 351 (446)
.+.|+-|+-....++ .+..+++ ++++.+|.+++..|+|..|...|++||.+.- .++
T Consensus 33 ~~LY~sA~~La~lLl-Sl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss 111 (167)
T 3ffl_A 33 AGLHSNVRLLSSLLL-TLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSAS 111 (167)
T ss_dssp TTCHHHHHHHHHHHH-HHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---------------
T ss_pred hhhHHHHHHHHHHHH-HhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCC
Confidence 356788888777766 6554444 3889999999999999999999999876532 110
Q ss_pred ----------HHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHH
Q 013299 352 ----------LKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQ 398 (446)
Q Consensus 352 ----------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~ 398 (446)
.+..+.++.|+.++|++++|+..++..-... ..+.+...+|.++
T Consensus 112 ~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~---Rt~kvnm~LakLy 165 (167)
T 3ffl_A 112 TPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQ---RTPKINMLLANLY 165 (167)
T ss_dssp -----CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGG---CCHHHHHHHHHHC
T ss_pred CcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchh---cCHHHHHHHHHHh
Confidence 2578899999999999999999987643221 3567777777765
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0037 Score=51.28 Aligned_cols=82 Identities=13% Similarity=0.124 Sum_probs=66.1
Q ss_pred hHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 013299 271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNM-RDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG 349 (446)
Q Consensus 271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P-~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~ 349 (446)
....|+++.++.... ...+..+++..++..+ ..+| +.-+.+|.||..+++.|+|++|..+++..|+.+|+
T Consensus 39 ~~t~F~YAw~Lv~S~--------~~~di~~GI~LLe~l~-~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~ 109 (144)
T 1y8m_A 39 IQSRFNYAWGLIKST--------DVNDERLGVKILTDIY-KEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 109 (144)
T ss_dssp HHHHHHHHHHHHHSS--------SHHHHHHHHHHHHHHH-HHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHcCC--------CHHHHHHHHHHHHHHH-hcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 556677766664432 2356789999999999 8888 46789999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHH
Q 013299 350 SNLKGWLLMARIL 362 (446)
Q Consensus 350 ~~~~~~~~la~~~ 362 (446)
+. .+......|-
T Consensus 110 n~-QA~~Lk~~Ie 121 (144)
T 1y8m_A 110 NK-QVGALKSMVE 121 (144)
T ss_dssp CH-HHHHHHHHHH
T ss_pred cH-HHHHHHHHHH
Confidence 94 7766655443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.029 Score=59.21 Aligned_cols=113 Identities=12% Similarity=0.012 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhh--------cCCCC---------HHHHHH
Q 013299 298 QAKALQALVSAARSTNMRDLSILYRLSLEYAE---QRKLNAAHYYAKMLLKL--------EGGSN---------LKGWLL 357 (446)
Q Consensus 298 ~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~---~~~~~~A~~~~~~al~l--------~P~~~---------~~~~~~ 357 (446)
++.|+..+++.. +.+|... +++..+.+... ..+--+|+....++++- .+.+. ...+..
T Consensus 265 ~~~a~~~le~L~-~~~p~~~-~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~ 342 (754)
T 4gns_B 265 VDFTIDYLKGLT-KKDPIHD-IYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNI 342 (754)
T ss_dssp HHHHHHHHHHHH-HHCGGGH-HHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-hhCCchh-HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHH
Confidence 578999999999 9999764 34444433322 22345677777777642 22220 123444
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 013299 358 MARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHL 414 (446)
Q Consensus 358 la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~ 414 (446)
-+..+...|+|+-|+.+-++|+...| +.+..|+.++.+|..+|+++.|+-.+...
T Consensus 343 Qa~FLl~K~~~elAL~~Ak~AV~~aP--seF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 343 QTNFLLNRGDYELALGVSNTSTELAL--DSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCS--SCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHhccCcHHHHHHHHHHHHhcCc--hhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 57777889999999999999999999 89999999999999999999999887755
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.94 E-value=0.064 Score=56.65 Aligned_cols=58 Identities=19% Similarity=0.163 Sum_probs=51.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 013299 320 LYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAA 378 (446)
Q Consensus 320 ~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~a 378 (446)
+.--+..+...|+++-|+.+.++|+...|.. ..+|..|+.+|..+|+|+.|+-.+.-+
T Consensus 340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPse-F~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 340 LNIQTNFLLNRGDYELALGVSNTSTELALDS-FESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC-HHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcCchh-hHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3344666777899999999999999999998 799999999999999999999888765
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=95.57 E-value=0.23 Score=48.37 Aligned_cols=63 Identities=14% Similarity=0.031 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 013299 354 GWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAAL 418 (446)
Q Consensus 354 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~ 418 (446)
+...++..+...|++.+|+..+.+++..+| -+-.+|..+-.++...|+..+|++.|+++-+..
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P--~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L 235 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHP--YREPLWTQLITAYYLSDRQSDALGAYRRVKTTL 235 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 444566677788888888888888888888 777788888888888888888888888776654
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=95.56 E-value=0.42 Score=46.44 Aligned_cols=94 Identities=18% Similarity=0.120 Sum_probs=49.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhcC--CC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhc----CCCC-cHHHH
Q 013299 322 RLSLEYAEQRKLNAAHYYAKMLLKLEG--GS---NLKGWLLMARILSAQKRYEDAETILNAALDQT----GKWE-QGELL 391 (446)
Q Consensus 322 ~lg~~~~~~~~~~~A~~~~~~al~l~P--~~---~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~----p~~~-~~~~~ 391 (446)
.||.+|.+.|+|.+|...+.+.+.--. ++ -.+.+..-..+++.+|++..+..++.+|.... |.|. .+.+.
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 566666666666666666665554211 11 12334445555666666666666666665332 2000 12333
Q ss_pred HHHHHHHH-HhCCHHHHHHHHHHHH
Q 013299 392 RTKAKVQL-VQGQLKGAVETYTHLL 415 (446)
Q Consensus 392 ~~~a~~~~-~~g~~~eA~~~~~~~l 415 (446)
..-|.++. ..++|.+|-..|-.++
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHH
Confidence 44455566 5666666666665554
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=95.53 E-value=0.26 Score=41.53 Aligned_cols=101 Identities=11% Similarity=0.048 Sum_probs=77.3
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh--h--cCCC--
Q 013299 312 TNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALD--Q--TGKW-- 385 (446)
Q Consensus 312 ~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~--~--~p~~-- 385 (446)
+-|..++...-++.++.-.|.+..|+-.+.+ + +...+.+..+.++..+++|..|+..++..+. . +|+.
T Consensus 28 L~~~~~eY~lL~~I~LyyngEY~R~Lf~L~~---l---NT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~ 101 (242)
T 3kae_A 28 LLPCKPEYRMLMSIVLYLNGEYTRALFHLHK---L---NTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDA 101 (242)
T ss_dssp HC----CTHHHHHHHHHHTTCHHHHHHHHHT---C---CBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCH
T ss_pred HccCChHHHhhhhhhhhhcchHhHHHHHHHh---c---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccccc
Confidence 5677778888889999999999998876532 2 2357888899999999999999999999992 2 3321
Q ss_pred ---------CcHHH-HHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 013299 386 ---------EQGEL-LRTKAKVQLVQGQLKGAVETYTHLLAAL 418 (446)
Q Consensus 386 ---------~~~~~-~~~~a~~~~~~g~~~eA~~~~~~~l~l~ 418 (446)
.+-+. +..+|.++...|..+||+..|.......
T Consensus 102 ~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~ 144 (242)
T 3kae_A 102 RIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKS 144 (242)
T ss_dssp HHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCc
Confidence 33444 4577999999999999999999887775
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.15 E-value=0.13 Score=51.74 Aligned_cols=83 Identities=11% Similarity=-0.006 Sum_probs=55.3
Q ss_pred HHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHH
Q 013299 275 CLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKG 354 (446)
Q Consensus 275 ~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~ 354 (446)
.....++...|+.+ .....+..|..+|.+|+ .++|++...++.||.+....|+.-+|+-+|-+++......+ .+
T Consensus 149 ~~~hr~l~~LGDL~----RY~~~~~~A~~~Y~~A~-~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~-~a 222 (497)
T 1ya0_A 149 YICQHCLVHLGDIA----RYRNQTSQAESYYRHAA-QLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFP-AA 222 (497)
T ss_dssp HHHHHHHHHHHHHH----HHTTCHHHHHHHHHHHH-HHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCH-HH
T ss_pred HHHHHHHHHcccHH----HHHHHHHHHHHHHHHHH-HhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCCh-hH
Confidence 34444555555432 11234567777788887 77888877778888777777777777777777777666563 77
Q ss_pred HHHHHHHHH
Q 013299 355 WLLMARILS 363 (446)
Q Consensus 355 ~~~la~~~~ 363 (446)
+.++..++.
T Consensus 223 ~~nL~~~f~ 231 (497)
T 1ya0_A 223 STNLQKALS 231 (497)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777766553
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=94.96 E-value=1.9 Score=41.86 Aligned_cols=181 Identities=14% Similarity=-0.024 Sum_probs=108.6
Q ss_pred HHHHHHHhHHHHHHhCChHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHH
Q 013299 62 LNRAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEA 141 (446)
Q Consensus 62 ~~~a~~~l~~~~~~~g~~~eA~~~y~~al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA 141 (446)
-+.++..||.+|.+.|+.++-..........=+.+.-.-++.+.+.+-..+.. . + +..+.-
T Consensus 18 ~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~--~----------------~-~~~~~~ 78 (394)
T 3txn_A 18 KEQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLD--M----------------D-AGTGIE 78 (394)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTT--S----------------C-CCHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhc--C----------------C-CcHHHH
Confidence 36788899999999999999999888876551111211122233333222110 0 1 112222
Q ss_pred HHHHHHHHHHHHhhcCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHhhCC----CCC--CcHHHHHHHHHHHHHCCCh
Q 013299 142 ILLLMILLRKVALKRIEWDPS----ILDHLSFAFSIAGDLSSLATQIEELLP----GII--NRKERYHILALCYYGAGED 211 (446)
Q Consensus 142 ~~~l~~~~~~~~l~~~p~~~~----~~~~lg~~l~~~~~~~~A~~~~~~al~----~~p--~~~~~~~~lg~~~~~~g~~ 211 (446)
+.+.+.++..+- +..-.. .-..+|..|...|++.+|...+.+.++ .+. --.+.+..-..+|...|++
T Consensus 79 ~~~~~~~~~~a~---~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~ 155 (394)
T 3txn_A 79 VQLCKDCIEWAK---QEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNL 155 (394)
T ss_dssp HHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccH
Confidence 333222221111 011111 123789999999999999887776654 221 1235566678889999999
Q ss_pred HHHHHHHHHHhcC--C--CCCCChHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHcCC
Q 013299 212 LVALNLLRTLLSG--S--EDPKCLPALLIASKICGE-YPDLAEEGATFASRALECLGD 264 (446)
Q Consensus 212 ~eA~~~~~~al~~--~--~~P~~~~a~~~~~~~~~~-~~~~~~eA~~~~~~al~~~~~ 264 (446)
..+...|.++.+. . .+|.-...+...+|+++. ..+++.+|-.+|-.+++..+.
T Consensus 156 ~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~ 213 (394)
T 3txn_A 156 PKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDS 213 (394)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccc
Confidence 9999999988621 1 122222233445667777 789999999999999875543
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=94.95 E-value=3 Score=43.03 Aligned_cols=116 Identities=11% Similarity=-0.015 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHHHhhCCCCHHHHH----HHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHH
Q 013299 296 TRQAKALQALVSAARSTNMRDLSILY----RLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDA 371 (446)
Q Consensus 296 ~~~~eAl~~~~~al~~~~P~~~~a~~----~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA 371 (446)
.+.+.|...+.+.. ...+-+..... .+|.-+...+...++...+.++....+++ ...-...+. ....|+++.|
T Consensus 228 ~d~~~A~~~~~~~~-~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~r~-Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLA-QAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQST-SLIERRVRM-ALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHH-HHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCH-HHHHHHHHH-HHHHTCHHHH
T ss_pred cCHHHHHHHHHhhh-hccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCCh-HHHHHHHHH-HHHCCCHHHH
Confidence 35678888888876 54444444333 23333333443667778888766544443 233333344 4467999999
Q ss_pred HHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 013299 372 ETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLA 416 (446)
Q Consensus 372 ~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~ 416 (446)
..++++.-...+ ......|=+|.++...|+.++|...|+++..
T Consensus 305 ~~~~~~l~~~~~--~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAK--EKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGG--GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHcccccc--ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 999987655333 4567778899999999999999999998865
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=94.90 E-value=0.24 Score=45.11 Aligned_cols=119 Identities=14% Similarity=0.011 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHH-HHHHHHccCHHHHHH
Q 013299 295 ATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLM-ARILSAQKRYEDAET 373 (446)
Q Consensus 295 ~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~l-a~~~~~~g~~~eA~~ 373 (446)
.+..++|++.....+ +.+|.|++....|-.++.-.|+++.|..-++.+.+++|+.. ..-..+ ..|. |..
T Consensus 10 ~g~L~~al~~~~~~V-R~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~-~~a~~yr~lI~--------aE~ 79 (273)
T 1zbp_A 10 EGQLQQALELLIEAI-KASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL-PGASQLRHLVK--------AAQ 79 (273)
T ss_dssp TTCHHHHHHHHHHHH-HTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH-HHHHHHHHHHH--------HHH
T ss_pred CCCHHHHHHHHHHHH-HhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh-HHHHHHHHHHH--------HHH
Confidence 356899999999999 99999999999999999999999999999999999999973 332221 1111 111
Q ss_pred HHHHHHh--hcCC----CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhh
Q 013299 374 ILNAALD--QTGK----WEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTK 423 (446)
Q Consensus 374 ~~~~al~--~~p~----~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~ 423 (446)
.=.+.+. ..|. +.........+......|+.++|.+.-.++++..|....
T Consensus 80 ~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 80 ARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp HHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred HHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 1111221 1121 023444556788888999999999999999999876443
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=93.82 E-value=0.98 Score=43.81 Aligned_cols=60 Identities=10% Similarity=-0.120 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 013299 319 ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAAL 379 (446)
Q Consensus 319 a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al 379 (446)
+...++..+...|++++|+..+.+++..+|-+ ..+|..+-.++...|+..+|+..|++.-
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~-E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYR-EPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44456777888999999999999999999998 4899999999999999999999988764
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=93.74 E-value=1.4 Score=37.19 Aligned_cols=100 Identities=17% Similarity=0.188 Sum_probs=72.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCC-----------
Q 013299 157 IEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGS----------- 225 (446)
Q Consensus 157 ~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~----------- 225 (446)
.|..++--..++..+.-.|++.+++-.+.+ -+...+.+.-..||....+|..|+..++..|..+
T Consensus 29 ~~~~~eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~ 103 (242)
T 3kae_A 29 LPCKPEYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARI 103 (242)
T ss_dssp C----CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHH
T ss_pred ccCChHHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccccccc
Confidence 366667777889999999999998877653 3456777888999999999999999999988322
Q ss_pred ----CCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 013299 226 ----EDPKCLPALLIASKICGEYPDLAEEGATFASRALEC 261 (446)
Q Consensus 226 ----~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~ 261 (446)
.||.+-+....+.+..+.+.|..+||+.++.+....
T Consensus 104 ~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~ 143 (242)
T 3kae_A 104 QEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGK 143 (242)
T ss_dssp HTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCC
Confidence 234555544443334455678999999999988775
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.16 E-value=0.28 Score=49.30 Aligned_cols=76 Identities=14% Similarity=0.046 Sum_probs=65.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHH
Q 013299 163 ILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKI 240 (446)
Q Consensus 163 ~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~ 240 (446)
.+..+|.+..-...+..|..+|.+|+.+.|++...|++||.+....|+.-+|+-.|-+++ ....-++.+..++..+
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl--~~~~Pf~~a~~nL~~~ 229 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSI--AVKFPFPAASTNLQKA 229 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHH--SSSBCCHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHH--hcCCCChhHHHHHHHH
Confidence 445788888888899999999999999999999999999999999999999999999999 5555577776655433
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.99 E-value=1.6 Score=37.17 Aligned_cols=97 Identities=12% Similarity=0.032 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHH
Q 013299 294 RATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAET 373 (446)
Q Consensus 294 ~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~ 373 (446)
..|+++.|.+..+ ++ ++...|..||......|+++-|+.+|+++ ++ .. .+..+|...|+-+.-..
T Consensus 17 ~lg~l~~A~e~a~----~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~-----~D-~~---~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 17 EYGNLDAALDEAK----KL--NDSITWERLIQEALAQGNASLAEMIYQTQ-----HS-FD---KLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HTTCHHHHHHHHH----HH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHT-----TC-HH---HHHHHHHHHTCHHHHHH
T ss_pred hcCCHHHHHHHHH----Hh--CCHHHHHHHHHHHHHcCChHHHHHHHHHh-----CC-HH---HHHHHHHHhCCHHHHHH
Confidence 3456666655533 23 56778888888888888888888888776 22 22 24445555666655444
Q ss_pred HHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHH
Q 013299 374 ILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYT 412 (446)
Q Consensus 374 ~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~ 412 (446)
.-+.|... . ++ ..- ..++..+|+++++++.|.
T Consensus 82 la~iA~~~-g--~~-n~a---f~~~l~lGdv~~~i~lL~ 113 (177)
T 3mkq_B 82 MQNIAQTR-E--DF-GSM---LLNTFYNNSTKERSSIFA 113 (177)
T ss_dssp HHHHHHHT-T--CH-HHH---HHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHC-c--cH-HHH---HHHHHHcCCHHHHHHHHH
Confidence 44444332 2 22 111 123344555555555553
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.62 E-value=1.3 Score=48.05 Aligned_cols=91 Identities=12% Similarity=-0.076 Sum_probs=49.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH-----hhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh--cCCCCcHHHHH
Q 013299 320 LYRLSLEYAEQRKLNAAHYYAKMLL-----KLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQ--TGKWEQGELLR 392 (446)
Q Consensus 320 ~~~lg~~~~~~~~~~~A~~~~~~al-----~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~p~~~~~~~~~ 392 (446)
++.+-..|.+.|++++|...|.+.. ...|+ ...|..+-..+.+.|+.++|...|++..+. .| |...|.
T Consensus 130 ynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pd--vvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P---DvvTYn 204 (1134)
T 3spa_A 130 LLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT--LDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP---DLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC---CHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCC--HhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC---cHHHHH
Confidence 4444455556666666666664432 13444 356666666666666666666666665543 34 445555
Q ss_pred HHHHHHHHhCCH-HHHHHHHHHHH
Q 013299 393 TKAKVQLVQGQL-KGAVETYTHLL 415 (446)
Q Consensus 393 ~~a~~~~~~g~~-~eA~~~~~~~l 415 (446)
.+-..+.+.|+. ++|.+.+++..
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~ 228 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMS 228 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHH
Confidence 555555666653 45555555443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=91.81 E-value=2.1 Score=45.09 Aligned_cols=48 Identities=8% Similarity=0.011 Sum_probs=38.6
Q ss_pred HHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHh
Q 013299 170 AFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLL 222 (446)
Q Consensus 170 ~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al 222 (446)
.....|++++|.+..+. .+++..|..+|..+...|+++.|+.+|.++-
T Consensus 661 ~~l~~~~~~~A~~~~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHHTCHHHHHHHHTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhhhcCCHHHHHHHHHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 34567899988887642 3577889999999999999999999999865
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.34 E-value=0.67 Score=45.68 Aligned_cols=119 Identities=16% Similarity=0.051 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHccCHHHHHHH
Q 013299 297 RQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLE--GGSNLKGWLLMARILSAQKRYEDAETI 374 (446)
Q Consensus 297 ~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~--P~~~~~~~~~la~~~~~~g~~~eA~~~ 374 (446)
.+++.+..+++-. ..+..-..++..+|..|.+.|++++|.+.|.++...- +++-...+.....+....+++..+..+
T Consensus 112 ~l~~~~~~~~~~~-~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~ 190 (429)
T 4b4t_R 112 ELNEKIQKLEEDD-EGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEK 190 (429)
T ss_dssp HHHHHHHHHHHCC-SCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHhhc-cccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 3444444444322 2333445688899999999999999999999987754 333346788888888999999999999
Q ss_pred HHHHHhhcCCCCc----HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 013299 375 LNAALDQTGKWEQ----GELLRTKAKVQLVQGQLKGAVETYTHLLA 416 (446)
Q Consensus 375 ~~~al~~~p~~~~----~~~~~~~a~~~~~~g~~~eA~~~~~~~l~ 416 (446)
+.++-....+..+ .......|.++...++|.+|-..|-.++.
T Consensus 191 ~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 191 LEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhc
Confidence 9999755321112 23345667888899999999998877654
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=90.91 E-value=3.6 Score=43.32 Aligned_cols=74 Identities=9% Similarity=-0.066 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--------hcCCCCHHHHHHHHHHHHHcc
Q 013299 295 ATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLK--------LEGGSNLKGWLLMARILSAQK 366 (446)
Q Consensus 295 ~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~--------l~P~~~~~~~~~la~~~~~~g 366 (446)
.|++++|.+..+ ..+++..|-.+|..+.+.++++.|+.+|.++=. ...++ .+.+..++.+....|
T Consensus 665 ~~~~~~A~~~~~------~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~-~~~~~~~~~~a~~~~ 737 (814)
T 3mkq_A 665 VGQLTLARDLLT------DESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNN-KEGLVTLAKDAETTG 737 (814)
T ss_dssp HTCHHHHHHHHT------TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTC-HHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHH------hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCC-HHHHHHHHHHHHHcC
Confidence 356788877642 346789999999999999999999999998621 12233 244445555555555
Q ss_pred CHHHHHHHH
Q 013299 367 RYEDAETIL 375 (446)
Q Consensus 367 ~~~eA~~~~ 375 (446)
++..|...+
T Consensus 738 ~~~~A~~~~ 746 (814)
T 3mkq_A 738 KFNLAFNAY 746 (814)
T ss_dssp CHHHHHHHH
T ss_pred chHHHHHHH
Confidence 555555444
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=90.78 E-value=0.65 Score=42.32 Aligned_cols=57 Identities=12% Similarity=0.038 Sum_probs=51.0
Q ss_pred HHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013299 326 EYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTG 383 (446)
Q Consensus 326 ~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 383 (446)
.+.+.|++++|+......++-+|.+ +.....+-.++.-.|+++.|.+-++.+.+++|
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~d-a~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p 62 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKD-ASLRSSFIELLCIDGDFERADEQLMQSIKLFP 62 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCG
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Confidence 4566789999999999999999998 59999999999999999999999999999999
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=89.05 E-value=12 Score=34.81 Aligned_cols=82 Identities=9% Similarity=-0.038 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----------------hh---cCCCCHHHHHH
Q 013299 297 RQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLL----------------KL---EGGSNLKGWLL 357 (446)
Q Consensus 297 ~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al----------------~l---~P~~~~~~~~~ 357 (446)
-..+|+.+-.+.- ...-.||+.|..+|..+...|++.+|..+|-..- +. .|.. ...+..
T Consensus 115 fi~~ai~WS~~~g-~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e-~dlf~~ 192 (312)
T 2wpv_A 115 VITGMNNWSIKFS-EYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDST-VAEFFS 192 (312)
T ss_dssp HHHHHHHHHHHTS-SCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHH-HHHHHH
T ss_pred HHHHHHHHHhhcC-CCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcch-HHHHHH
Confidence 3456666665544 3345799999999999999999999999884221 11 1221 233334
Q ss_pred HHH-HHHHccCHHHHHHHHHHHHh
Q 013299 358 MAR-ILSAQKRYEDAETILNAALD 380 (446)
Q Consensus 358 la~-~~~~~g~~~eA~~~~~~al~ 380 (446)
.+. .+...|+...|...++...+
T Consensus 193 RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 193 RLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHH
Confidence 443 35677888888888776653
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=88.29 E-value=16 Score=33.96 Aligned_cols=83 Identities=4% Similarity=-0.184 Sum_probs=52.6
Q ss_pred HHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHh---------------cCC---CCCCChHHHHHHHH
Q 013299 178 SSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLL---------------SGS---EDPKCLPALLIASK 239 (446)
Q Consensus 178 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al---------------~~~---~~P~~~~a~~~~~~ 239 (446)
.+|+.+-.+.-...-++|+.|..+|..|+..|++.+|..+|-.+- + . -.|.....+...+-
T Consensus 117 ~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~-~~~~~~~~e~dlf~~RaV 195 (312)
T 2wpv_A 117 TGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLC-QVDDIEDSTVAEFFSRLV 195 (312)
T ss_dssp HHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHH-HTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHH-hcCCCCcchHHHHHHHHH
Confidence 345555544434455789999999999999999999998875211 0 1 23444444444444
Q ss_pred HHhcCCCCHHHHHHHHHHHHHH
Q 013299 240 ICGEYPDLAEEGATFASRALEC 261 (446)
Q Consensus 240 ~~~~~~~~~~eA~~~~~~al~~ 261 (446)
+.+.-.++...|...++...+.
T Consensus 196 L~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 196 FNYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 4444467788888777766544
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=87.91 E-value=18 Score=34.01 Aligned_cols=82 Identities=11% Similarity=-0.047 Sum_probs=48.4
Q ss_pred HHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHh---------------cCCCCCCChHHHHHHHHHHh
Q 013299 178 SSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLL---------------SGSEDPKCLPALLIASKICG 242 (446)
Q Consensus 178 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al---------------~~~~~P~~~~a~~~~~~~~~ 242 (446)
.+|+.+=.+.=...-++++.|..+|..|+..+++.+|..+|--.- + ...|.....+...+-+.+
T Consensus 119 ~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~-~~~~~e~dlfiaRaVL~y 197 (336)
T 3lpz_A 119 KEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYK-QDESHTAPLYCARAVLPY 197 (336)
T ss_dssp HHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHH-TSCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHH-hcCCccHHHHHHHHHHHH
Confidence 344444444333456778888888888888888888877762110 1 222444444444444444
Q ss_pred cCCCCHHHHHHHHHHHHH
Q 013299 243 EYPDLAEEGATFASRALE 260 (446)
Q Consensus 243 ~~~~~~~eA~~~~~~al~ 260 (446)
.-.++...|...++..++
T Consensus 198 L~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 198 LLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHH
Confidence 456777777776555444
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.47 E-value=3.6 Score=44.78 Aligned_cols=95 Identities=11% Similarity=-0.015 Sum_probs=46.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhCCC----CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHH
Q 013299 164 LDHLSFAFSIAGDLSSLATQIEELLPG----IINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASK 239 (446)
Q Consensus 164 ~~~lg~~l~~~~~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~ 239 (446)
|.-+-..+++.|+.++|.+.|++.-.. -.-+..+|+.|-..|.+.|+.++|...|++.......||-...-..+.+
T Consensus 130 ynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~g 209 (1134)
T 3spa_A 130 LLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC 209 (1134)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 444555566666666666666432211 1224455666666666666666666666655533445543322222222
Q ss_pred HHhcCCCC-HHHHHHHHHHHHH
Q 013299 240 ICGEYPDL-AEEGATFASRALE 260 (446)
Q Consensus 240 ~~~~~~~~-~~eA~~~~~~al~ 260 (446)
+| + .|+ .++|...+++..+
T Consensus 210 lc-K-~G~~~e~A~~Ll~EM~~ 229 (1134)
T 3spa_A 210 MG-R-QDQDAGTIERCLEQMSQ 229 (1134)
T ss_dssp HH-H-HTCCHHHHHHHHHHHHH
T ss_pred HH-h-CCCcHHHHHHHHHHHHH
Confidence 22 1 233 3455555555554
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.08 E-value=0.57 Score=46.95 Aligned_cols=142 Identities=10% Similarity=0.095 Sum_probs=57.7
Q ss_pred HHhcCCCCHHHHHHHHHHHH--HHcCC----CcchhhhHHHHHhhchhHhhhhhhhch--HHHHH-HHHHHHHHHHHHHH
Q 013299 240 ICGEYPDLAEEGATFASRAL--ECLGD----GCDQMESTANCLLGISLSAQSKVAITD--FDRAT-RQAKALQALVSAAR 310 (446)
Q Consensus 240 ~~~~~~~~~~eA~~~~~~al--~~~~~----~~~~~~~~a~~~lg~~~~~~~~~~~~~--~~~~~-~~~eAl~~~~~al~ 310 (446)
+++.+.+++++|..+....+ +.+.. .-+.+.+.+|++.+.++...++..... ..... -...=+..++.|.-
T Consensus 144 i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~l 223 (523)
T 4b4t_S 144 LFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASL 223 (523)
T ss_dssp -----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCS
T ss_pred HHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhc
Confidence 34444566666666665554 11211 112345778888887776554321100 00000 00112334444441
Q ss_pred hhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013299 311 STNMRD-LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN------LKGWLLMARILSAQKRYEDAETILNAALDQTG 383 (446)
Q Consensus 311 ~~~P~~-~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 383 (446)
..|+.- +..++-+=..|...+.++.|.....++. .|.+. ...++.+|.++..+++|.+|..++..|+..-|
T Consensus 224 r~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap 301 (523)
T 4b4t_S 224 KHDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAP 301 (523)
T ss_dssp CSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCS
T ss_pred ccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 223333 3344555677888999999999999985 44320 24566789999999999999999999998777
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.38 E-value=0.48 Score=47.46 Aligned_cols=107 Identities=11% Similarity=0.065 Sum_probs=59.1
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHH--------------HHHHH-HhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Q 013299 312 TNMRDLSILYRLSLEYAEQRKLNAAHY--------------YAKML-LKLEGGSNLKGWLLMARILSAQKRYEDAETILN 376 (446)
Q Consensus 312 ~~P~~~~a~~~lg~~~~~~~~~~~A~~--------------~~~~a-l~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~ 376 (446)
+|+=++.+||+.+.++...|+..+... .++.| +..|++..+..|+.+-..|...+.|+.|...+.
T Consensus 176 lD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvs 255 (523)
T 4b4t_S 176 LNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFIS 255 (523)
T ss_dssp ---------------------------CHHHHHHHHTHHHHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHh
Confidence 466678899999999988887766432 22222 223443324678888899999999999999999
Q ss_pred HHHhhcCCC--Cc---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Q 013299 377 AALDQTGKW--EQ---GELLRTKAKVQLVQGQLKGAVETYTHLLAALQV 420 (446)
Q Consensus 377 ~al~~~p~~--~~---~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~ 420 (446)
++. .|.. .+ ...+|..|.+..-+++|.+|.+++..++...|.
T Consensus 256 k~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~ 302 (523)
T 4b4t_S 256 KLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPH 302 (523)
T ss_dssp HHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSC
T ss_pred cCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 984 5521 12 455678899999999999999999999887664
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=85.03 E-value=3.3 Score=46.19 Aligned_cols=104 Identities=15% Similarity=0.064 Sum_probs=79.1
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hcCC--------------------C-CHHHHHHHHHHHH
Q 013299 306 VSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLK-LEGG--------------------S-NLKGWLLMARILS 363 (446)
Q Consensus 306 ~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~-l~P~--------------------~-~~~~~~~la~~~~ 363 (446)
+..+ ..-|.++-.-|-+|.++...|++++|..+|++|-. +.++ + -...|..+..++.
T Consensus 832 ~~l~-~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe 910 (1139)
T 4fhn_B 832 MQLI-GWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLF 910 (1139)
T ss_dssp HHHH-HHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHH
T ss_pred HHHh-hhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHH
Confidence 3345 56788998899999999999999999999998732 1110 0 0145667778888
Q ss_pred HccCHHHHHHHHHHHHhhcCCCCcH----HHHHHHHHHHHHhCCHHHHHHHH
Q 013299 364 AQKRYEDAETILNAALDQTGKWEQG----ELLRTKAKVQLVQGQLKGAVETY 411 (446)
Q Consensus 364 ~~g~~~eA~~~~~~al~~~p~~~~~----~~~~~~a~~~~~~g~~~eA~~~~ 411 (446)
..|-++.++.....|++..+. ++. ..|.++=+.....|+|++|-.+.
T Consensus 911 ~~~~~~~vi~fa~lAi~~~~~-~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL 961 (1139)
T 4fhn_B 911 EESAYIDALEFSLLADASKET-DDEDLSIAITHETLKTACAAGKFDAAHVAL 961 (1139)
T ss_dssp HTSCCHHHHHHHHHHHHHCCS-CCHHHHHHHHHHHHHHHHHHCCSGGGGHHH
T ss_pred HcCCHHHHHHHHHHHHHhccC-CChhhHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 999999999999999987542 222 36777778889999999986555
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.76 E-value=17 Score=30.73 Aligned_cols=56 Identities=21% Similarity=0.190 Sum_probs=44.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHh
Q 013299 159 WDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLL 222 (446)
Q Consensus 159 ~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al 222 (446)
.|++..+.++ ...|+++.|.+..+.. ++..-|..||......|+++-|+.+|+++-
T Consensus 6 ~D~~~rF~LA---L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 6 QDPHIRFDLA---LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp SCHHHHHHHH---HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred CChHHHHHHH---HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 3454444443 4569999998887765 678899999999999999999999999866
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=83.24 E-value=53 Score=36.39 Aligned_cols=59 Identities=12% Similarity=0.019 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHH----HHHHHHHHHHHccCHHHHHHHHH
Q 013299 318 SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLK----GWLLMARILSAQKRYEDAETILN 376 (446)
Q Consensus 318 ~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~----~~~~la~~~~~~g~~~eA~~~~~ 376 (446)
..++.+..++.+.+.++.+++..+.|++..+.++.. .|..+=..+...|+|++|..++-
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~ 962 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALM 962 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 344444555555566666666666666544332111 34444444555566666655553
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 446 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 100.0 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 100.0 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.97 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.97 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.94 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.93 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.9 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.9 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.88 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.88 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.84 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.84 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.74 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.71 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.69 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.69 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.68 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.68 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.68 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.68 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.65 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.64 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.62 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.62 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.61 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.6 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.6 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.6 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.57 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.55 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.54 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.54 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.5 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.5 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.48 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.48 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.47 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.47 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.46 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.46 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.44 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.44 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.44 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.39 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 99.37 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 99.23 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 99.19 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 99.18 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 99.1 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 99.0 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.93 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.91 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 98.52 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 98.41 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 98.37 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 98.35 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 94.8 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 93.79 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 90.84 | |
| d2o02a1 | 230 | zeta isoform {Cow (Bos taurus) [TaxId: 9913]} | 84.74 | |
| d1o9da_ | 236 | 14-3-3-like protein C {Common tobacco (Nicotiana t | 80.75 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.1e-35 Score=288.58 Aligned_cols=354 Identities=16% Similarity=0.100 Sum_probs=296.7
Q ss_pred HHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHhCCC
Q 013299 14 FLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRALLPC 93 (446)
Q Consensus 14 ~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~al~~~ 93 (446)
+..|..+++.|+|++|++.|+++++. .|.+ ..++..+|.+|.+.|++++|+..|+++++.
T Consensus 3 l~la~~~~~~G~~~~A~~~~~~~l~~--------~p~~-----------~~~~~~la~~~~~~~~~~~A~~~~~~al~~- 62 (388)
T d1w3ba_ 3 MELAHREYQAGDFEAAERHCMQLWRQ--------EPDN-----------TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ- 62 (388)
T ss_dssp CTHHHHHHHHTCHHHHHHHHHHHHHH--------CTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 46788999999999999999999987 4553 257888999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHH------------------------
Q 013299 94 WNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILL------------------------ 149 (446)
Q Consensus 94 ~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~------------------------ 149 (446)
+|.+... ...++..+. ..|++++|+..+....
T Consensus 63 ---~p~~~~a-~~~l~~~~~--------------------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (388)
T d1w3ba_ 63 ---NPLLAEA-YSNLGNVYK--------------------ERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDME 118 (388)
T ss_dssp ---CTTCHHH-HHHHHHHHH--------------------HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSS
T ss_pred ---CCCCHHH-HHHHHHHhh--------------------hhcccccccccccccccccccccccccccccccccccccc
Confidence 5554332 344454433 3455666665542220
Q ss_pred -----HHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcC
Q 013299 150 -----RKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSG 224 (446)
Q Consensus 150 -----~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~ 224 (446)
........+.........+......+....+...+.+.+...|+++.++..+|.++...|++++|...+++++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al-- 196 (388)
T d1w3ba_ 119 GAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAV-- 196 (388)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH--
T ss_pred ccccccccccccccccccccccccccccccchhhhhHHHHHHhhccCcchhHHHHhhcccccccCcHHHHHHHHHHHH--
Confidence 0112233455666677777888888888999999999999999999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHH
Q 013299 225 SEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQA 304 (446)
Q Consensus 225 ~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~ 304 (446)
..+|+++.++..+|.++ ...|++++|+..+++++...+.. ...+..+|.++... |++++|+..
T Consensus 197 ~~~p~~~~~~~~l~~~~-~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~-----------~~~~~A~~~ 259 (388)
T d1w3ba_ 197 TLDPNFLDAYINLGNVL-KEARIFDRAVAAYLRALSLSPNH-----AVVHGNLACVYYEQ-----------GLIDLAIDT 259 (388)
T ss_dssp HHCTTCHHHHHHHHHHH-HTTTCTTHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHT-----------TCHHHHHHH
T ss_pred HhCcccHHHHHHHhhhh-hccccHHHHHHHHHHhHHHhhhH-----HHHHHHHHHHHHHC-----------CCHHHHHHH
Confidence 89999999998887765 45789999999999999964433 56788899988654 568999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCC
Q 013299 305 LVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGK 384 (446)
Q Consensus 305 ~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~ 384 (446)
|++++ +++|+++.+++++|.++...|++++|+..+++++...|.+ ..++..+|.++..+|++++|+.+++++++.+|
T Consensus 260 ~~~al-~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p- 336 (388)
T d1w3ba_ 260 YRRAI-ELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH-ADSLNNLANIKREQGNIEEAVRLYRKALEVFP- 336 (388)
T ss_dssp HHHHH-HTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCT-
T ss_pred HHHHH-HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCcc-chhhhHHHHHHHHCCCHHHHHHHHHHHHHhCC-
Confidence 99999 9999999999999999999999999999999999999998 59999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhccCCcchhhHHhhhhccccC
Q 013299 385 WEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKVYFMRKRVSTK 444 (446)
Q Consensus 385 ~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (446)
+++.+++++|.++..+|++++|++.|++++++. |+...+|+++++++.+
T Consensus 337 -~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~----------P~~~~a~~~lg~~~~~ 385 (388)
T d1w3ba_ 337 -EFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS----------PTFADAYSNMGNTLKE 385 (388)
T ss_dssp -TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC----------TTCHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------CCCHHHHHHHHHHHHH
Confidence 899999999999999999999999999999885 5667788888877643
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.5e-35 Score=283.12 Aligned_cols=342 Identities=17% Similarity=0.085 Sum_probs=283.0
Q ss_pred HHHHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHH
Q 013299 10 LEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRA 89 (446)
Q Consensus 10 ~~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~a 89 (446)
.++++.+|.++..+|++++|+..|+++|+. .|.. ..++..+|.+|...|++++|+..|.++
T Consensus 33 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~-----------~~a~~~l~~~~~~~g~~~~A~~~~~~~ 93 (388)
T d1w3ba_ 33 TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ--------NPLL-----------AEAYSNLGNVYKERGQLQEAIEHYRHA 93 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCC-----------HHHHHHHHHHhhhhccccccccccccc
Confidence 578999999999999999999999999987 4553 357888999999999999999999999
Q ss_pred hCCCCCCChHHHHHHHHHHHHHHhhhcCCC------------CCCcc--ccccCccccCCCcHHHHHHHHHHHHHHHHhh
Q 013299 90 LLPCWNLDAETTAKLQKEFAIFLLYCGGET------------CPPNL--RSQMGSSFVPRNNIEEAILLLMILLRKVALK 155 (446)
Q Consensus 90 l~~~~~~~~~~~~~l~~~~a~~ll~~~~~~------------~~~~~--~~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~ 155 (446)
+.. +|...... .............. .+... ...........+....+...+ ...+.
T Consensus 94 ~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 163 (388)
T d1w3ba_ 94 LRL----KPDFIDGY-INLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACY-----LKAIE 163 (388)
T ss_dssp HHH----CTTCHHHH-HHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHH-----HHHHH
T ss_pred ccc----cccccccc-ccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHH-----HHhhc
Confidence 998 33222211 11111111111000 00000 001111222333444444432 44567
Q ss_pred cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHH
Q 013299 156 RIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALL 235 (446)
Q Consensus 156 ~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~ 235 (446)
..|+++.++..+|..+...|++++|+..+++++..+|+++++|..+|.++...|++++|+..|++++ ..+|.++..+.
T Consensus 164 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~~ 241 (388)
T d1w3ba_ 164 TQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRAL--SLSPNHAVVHG 241 (388)
T ss_dssp HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHH--HHCTTCHHHHH
T ss_pred cCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhH--HHhhhHHHHHH
Confidence 7899999999999999999999999999999999999999999999999999999999999999999 89999999988
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCC
Q 013299 236 IASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMR 315 (446)
Q Consensus 236 ~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~ 315 (446)
.+|.++.. .|++++|+..|+++++..|.+ +.++..+|.++... +++++|+..|++++ ...|+
T Consensus 242 ~l~~~~~~-~~~~~~A~~~~~~al~~~p~~-----~~~~~~l~~~~~~~-----------~~~~~A~~~~~~~~-~~~~~ 303 (388)
T d1w3ba_ 242 NLACVYYE-QGLIDLAIDTYRRAIELQPHF-----PDAYCNLANALKEK-----------GSVAEAEDCYNTAL-RLCPT 303 (388)
T ss_dssp HHHHHHHH-TTCHHHHHHHHHHHHHTCSSC-----HHHHHHHHHHHHHH-----------SCHHHHHHHHHHHH-HHCTT
T ss_pred HHHHHHHH-CCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHc-----------CCHHHHHHHHHhhh-ccCCc
Confidence 88877655 689999999999999954443 57899999998664 57899999999999 99999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHH
Q 013299 316 DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKA 395 (446)
Q Consensus 316 ~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a 395 (446)
++.+++.+|.++...|++++|+..|+++++++|++ ..+|.++|.++..+|++++|+.+|++|++++| +++.++.++|
T Consensus 304 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P--~~~~a~~~lg 380 (388)
T d1w3ba_ 304 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF-AAAHSNLASVLQQQGKLQEALMHYKEAIRISP--TFADAYSNMG 380 (388)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTC-HHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT--TCHHHHHHHH
T ss_pred cchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHH
Confidence 99999999999999999999999999999999999 59999999999999999999999999999999 8999999999
Q ss_pred HHHHHhCC
Q 013299 396 KVQLVQGQ 403 (446)
Q Consensus 396 ~~~~~~g~ 403 (446)
.++.++|+
T Consensus 381 ~~~~~~~D 388 (388)
T d1w3ba_ 381 NTLKEMQD 388 (388)
T ss_dssp HHHHHTCC
T ss_pred HHHHHcCC
Confidence 99999986
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=6.6e-30 Score=244.38 Aligned_cols=256 Identities=14% Similarity=0.082 Sum_probs=209.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHH
Q 013299 160 DPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASK 239 (446)
Q Consensus 160 ~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~ 239 (446)
+....+..|..+...|++++|+.+|+++++.+|+++++|+.+|.++...|++++|+..|++++ .++|+++.++..+|.
T Consensus 18 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al--~~~p~~~~~~~~la~ 95 (323)
T d1fcha_ 18 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCL--ELKPDNQTALMALAV 95 (323)
T ss_dssp TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhh--ccccccccccccccc
Confidence 334456889999999999999999999999999999999999999999999999999999999 899999998888776
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHcCCCcchhh----hHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCC
Q 013299 240 ICGEYPDLAEEGATFASRALECLGDGCDQME----STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMR 315 (446)
Q Consensus 240 ~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~----~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~ 315 (446)
++. ..|++++|+..+++++...|....... ......++......+ .....+.+.+|+..|++++ +++|+
T Consensus 96 ~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~a~~~~~~al-~~~p~ 168 (323)
T d1fcha_ 96 SFT-NESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILG-----SLLSDSLFLEVKELFLAAV-RLDPT 168 (323)
T ss_dssp HHH-HTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTH-----HHHHHHHHHHHHHHHHHHH-HHSTT
T ss_pred ccc-ccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHH-----HHHHhhHHHHHHHHHHHHH-HHhhc
Confidence 654 478999999999999985443321110 011111111111110 1134567899999999999 99998
Q ss_pred --CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHH
Q 013299 316 --DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRT 393 (446)
Q Consensus 316 --~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~ 393 (446)
++.+++.+|.++..+|++++|+..|++++..+|++ ..+|..+|.++..+|++++|+.+|+++++.+| +++.+|++
T Consensus 169 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~ 245 (323)
T d1fcha_ 169 SIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND-YLLWNKLGATLANGNQSEEAVAAYRRALELQP--GYIRSRYN 245 (323)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHH
T ss_pred ccccccchhhHHHHHHHHHHhhhhccccccccccccc-ccchhhhhhcccccccchhHHHHHHHHHHHhh--ccHHHHHH
Confidence 47889999999999999999999999999999999 59999999999999999999999999999999 89999999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhccC
Q 013299 394 KAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSS 427 (446)
Q Consensus 394 ~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~~~~ 427 (446)
+|.++..+|++++|+..|++++++.|++......
T Consensus 246 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 279 (323)
T d1fcha_ 246 LGISCINLGAHREAVEHFLEALNMQRKSRGPRGE 279 (323)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHTC------
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhh
Confidence 9999999999999999999999999987665443
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=4.8e-29 Score=238.33 Aligned_cols=261 Identities=15% Similarity=0.084 Sum_probs=220.2
Q ss_pred cccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCC
Q 013299 131 SFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGE 210 (446)
Q Consensus 131 ~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 210 (446)
.+...|++++|+..+ +.+++.+|+++++|..+|.++...|++++|+.+|+++++++|+++..|+.+|.++...|+
T Consensus 28 ~~~~~g~~~~A~~~~-----~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 28 RRLQEGDLPNAVLLF-----EAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHTTCHHHHHHHH-----HHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHcCCHHHHHHHH-----HHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccccccccccccccccccc
Confidence 345678999999986 677899999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCCCCCCChHHHHHHH---------------HHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHH
Q 013299 211 DLVALNLLRTLLSGSEDPKCLPALLIAS---------------KICGEYPDLAEEGATFASRALECLGDGCDQMESTANC 275 (446)
Q Consensus 211 ~~eA~~~~~~al~~~~~P~~~~a~~~~~---------------~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~ 275 (446)
+++|+..+++++ ..+|+......... ..+ ...+.+.+|+..++++++..|... .+.++.
T Consensus 103 ~~~A~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~~~al~~~p~~~---~~~~~~ 176 (323)
T d1fcha_ 103 QRQACEILRDWL--RYTPAYAHLVTPAEEGAGGAGLGPSKRILGSL-LSDSLFLEVKELFLAAVRLDPTSI---DPDVQC 176 (323)
T ss_dssp HHHHHHHHHHHH--HTSTTTGGGCC---------------CTTHHH-HHHHHHHHHHHHHHHHHHHSTTSC---CHHHHH
T ss_pred ccccccchhhHH--HhccchHHHHHhhhhhhhhcccccchhhHHHH-HHhhHHHHHHHHHHHHHHHhhccc---ccccch
Confidence 999999999999 88998654321100 000 112467889999999999654432 256788
Q ss_pred HhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHH
Q 013299 276 LLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGW 355 (446)
Q Consensus 276 ~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 355 (446)
.+|.++... |++++|+..|++++ ..+|+++.+|+++|.++..+|++++|+..|+++++++|++ ..+|
T Consensus 177 ~l~~~~~~~-----------~~~~~A~~~~~~al-~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~ 243 (323)
T d1fcha_ 177 GLGVLFNLS-----------GEYDKAVDCFTAAL-SVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGY-IRSR 243 (323)
T ss_dssp HHHHHHHHT-----------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHH
T ss_pred hhHHHHHHH-----------HHHhhhhccccccc-ccccccccchhhhhhcccccccchhHHHHHHHHHHHhhcc-HHHH
Confidence 899888664 57899999999999 9999999999999999999999999999999999999999 5999
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHH-----------HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 013299 356 LLMARILSAQKRYEDAETILNAALDQTGKWEQGE-----------LLRTKAKVQLVQGQLKGAVETYTHLLAA 417 (446)
Q Consensus 356 ~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~-----------~~~~~a~~~~~~g~~~eA~~~~~~~l~l 417 (446)
.++|.++..+|++++|+.+|++|++++| ++.. +|..++.++..+|+.+.+...-.+.|+.
T Consensus 244 ~~lg~~~~~~g~~~~A~~~~~~al~l~p--~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~~~~~l~~ 314 (323)
T d1fcha_ 244 YNLGISCINLGAHREAVEHFLEALNMQR--KSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLST 314 (323)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHH--TC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCC--cChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCHHH
Confidence 9999999999999999999999999999 5544 4556677777777777666665555543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=1.5e-26 Score=221.45 Aligned_cols=247 Identities=12% Similarity=0.070 Sum_probs=217.1
Q ss_pred hcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCC-hHHHHHHHHHHhcCCCCCCChHH
Q 013299 155 KRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGE-DLVALNLLRTLLSGSEDPKCLPA 233 (446)
Q Consensus 155 ~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~eA~~~~~~al~~~~~P~~~~a 233 (446)
..+|+..+++..+|.++.+.+.+++|+++|++||.++|++..+|+++|.++...|+ +++|+..+++++ ..+|++..+
T Consensus 37 ~~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al--~~~p~~~~a 114 (315)
T d2h6fa1 37 IYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAII--EEQPKNYQV 114 (315)
T ss_dssp CCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH--HHCTTCHHH
T ss_pred ccCHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHH--HHHHhhhhH
Confidence 45688889999999999999999999999999999999999999999999999885 899999999999 899999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhC
Q 013299 234 LLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTN 313 (446)
Q Consensus 234 ~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~ 313 (446)
+...|.++ ...|++++|+..++++++..|.+ ..+|+++|.++... +++++|+..|++++ +++
T Consensus 115 ~~~~~~~~-~~l~~~~eAl~~~~kal~~dp~n-----~~a~~~~~~~~~~~-----------~~~~~Al~~~~~al-~~~ 176 (315)
T d2h6fa1 115 WHHRRVLV-EWLRDPSQELEFIADILNQDAKN-----YHAWQHRQWVIQEF-----------KLWDNELQYVDQLL-KED 176 (315)
T ss_dssp HHHHHHHH-HHHTCCTTHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHH-----------TCCTTHHHHHHHHH-HHC
T ss_pred HHHHhHHH-HhhccHHHHHHHHhhhhhhhhcc-----hHHHHHHHHHHHHH-----------HhhHHHHHHHHHHH-HHC
Confidence 99987665 55799999999999999965554 68999999999664 56899999999999 999
Q ss_pred CCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCc
Q 013299 314 MRDLSILYRLSLEYAEQRK------LNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQ 387 (446)
Q Consensus 314 P~~~~a~~~lg~~~~~~~~------~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~ 387 (446)
|+|..+|+++|.++...++ +++|+..+.+++.++|++ ..+|..++.++... ..+++...+++++++.|+..+
T Consensus 177 p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~-~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~~~~ 254 (315)
T d2h6fa1 177 VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHN-ESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPSHSS 254 (315)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTTCCC
T ss_pred CccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCc-hHHHHHHHHHHHhc-ChHHHHHHHHHHHHhCCCcCC
Confidence 9999999999999988776 689999999999999999 59999999987654 468899999999999985455
Q ss_pred HHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHHhhhhh
Q 013299 388 GELLRTKAKVQLV--QGQLKGAVETYTHLLAALQVQTK 423 (446)
Q Consensus 388 ~~~~~~~a~~~~~--~g~~~eA~~~~~~~l~l~~~~~~ 423 (446)
..++..++.++.. .++.+.+...+.+++++.+...+
T Consensus 255 ~~~~~~l~~~y~~~~~~~~~~~~~~~~ka~~l~~~l~~ 292 (315)
T d2h6fa1 255 PYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAK 292 (315)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 6667777777644 47778899999999998765443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=3.1e-25 Score=212.20 Aligned_cols=211 Identities=9% Similarity=0.006 Sum_probs=192.1
Q ss_pred hCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCc
Q 013299 187 LLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGC 266 (446)
Q Consensus 187 al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~ 266 (446)
.|..+|+..+++..+|.++...+++++|+..++++| .++|++..++...|.++....+++++|+.+++++++..|.+
T Consensus 35 ~I~~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai--~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~- 111 (315)
T d2h6fa1 35 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAI--ELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN- 111 (315)
T ss_dssp EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC-
T ss_pred ccccCHHHHHHHHHHHHHHHhCCchHHHHHHHHHHH--HHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhh-
Confidence 577899999999999999999999999999999999 89999999999998886654456899999999999965544
Q ss_pred chhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 013299 267 DQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKL 346 (446)
Q Consensus 267 ~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l 346 (446)
..+|..+|.++... |++++|+..|++++ +++|++..+|+++|.++...|++++|+..|++++++
T Consensus 112 ----~~a~~~~~~~~~~l-----------~~~~eAl~~~~kal-~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~ 175 (315)
T d2h6fa1 112 ----YQVWHHRRVLVEWL-----------RDPSQELEFIADIL-NQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE 175 (315)
T ss_dssp ----HHHHHHHHHHHHHH-----------TCCTTHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred ----hhHHHHHhHHHHhh-----------ccHHHHHHHHhhhh-hhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 68999999999654 57899999999999 999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHccC------HHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Q 013299 347 EGGSNLKGWLLMARILSAQKR------YEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQV 420 (446)
Q Consensus 347 ~P~~~~~~~~~la~~~~~~g~------~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~ 420 (446)
+|.+ ..+|.++|.++...++ +++|+..+.++++++| ++..+|++++.++... ..+++.+.+++++++.|.
T Consensus 176 ~p~n-~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P--~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~ 251 (315)
T d2h6fa1 176 DVRN-NSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVP--HNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPS 251 (315)
T ss_dssp CTTC-HHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHST--TCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTT
T ss_pred CCcc-HHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCC--CchHHHHHHHHHHHhc-ChHHHHHHHHHHHHhCCC
Confidence 9999 5999999999988776 6899999999999999 8999999999986654 468999999999999875
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.90 E-value=5.2e-25 Score=211.87 Aligned_cols=253 Identities=9% Similarity=-0.090 Sum_probs=187.8
Q ss_pred cHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcC----------CHHHHHHHHHhhCCCCCCcHHHHHHHHHHHH
Q 013299 137 NIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAG----------DLSSLATQIEELLPGIINRKERYHILALCYY 206 (446)
Q Consensus 137 ~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~----------~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 206 (446)
..++|+.++ +.++..+|++.++|+.++.++...+ ++++|+.+|++++..+|+++.+|+.+|.++.
T Consensus 44 ~~~~al~~~-----~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~ 118 (334)
T d1dcea1 44 LDESVLELT-----SQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 118 (334)
T ss_dssp CSHHHHHHH-----HHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred ccHHHHHHH-----HHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHH
Confidence 347888765 6678899999999988777765443 4789999999999999999999999999999
Q ss_pred HCCC--hHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhh
Q 013299 207 GAGE--DLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQ 284 (446)
Q Consensus 207 ~~g~--~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~ 284 (446)
..++ +++|+..+++++ ..+|++..++....+.++...+..++|+.+++++++..|.+ ..+|+++|.++...
T Consensus 119 ~~~~~~~~~a~~~~~~al--~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~-----~~a~~~l~~~~~~~ 191 (334)
T d1dcea1 119 RLPEPNWARELELCARFL--EADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN-----YSSWHYRSCLLPQL 191 (334)
T ss_dssp TCSSCCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCC-----HHHHHHHHHHHHHH
T ss_pred HhccccHHHHHHHHHHHH--hhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCC-----HHHHHHHHHHHHHh
Confidence 8875 789999999999 89999999887667777877899999999999999954443 67899999999776
Q ss_pred hhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q 013299 285 SKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSA 364 (446)
Q Consensus 285 ~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~ 364 (446)
++ +++|+..+++++ .+.|.+...+.. +...+..++|...|.+++..+|++. ..+..+|.++..
T Consensus 192 ~~-----------~~~A~~~~~~~~-~~~~~~~~~~~~----~~~l~~~~~a~~~~~~~l~~~~~~~-~~~~~l~~~~~~ 254 (334)
T d1dcea1 192 HP-----------QPDSGPQGRLPE-NVLLKELELVQN----AFFTDPNDQSAWFYHRWLLGRAEPL-FRCELSVEKSTV 254 (334)
T ss_dssp SC-----------CCCSSSCCSSCH-HHHHHHHHHHHH----HHHHCSSCSHHHHHHHHHHSCCCCS-SSCCCCHHHHHH
T ss_pred cC-----------HHHHHHHHHHhH-HhHHHHHHHHHH----HHHhcchhHHHHHHHHHHHhCcchh-hHHHHHHHHHHH
Confidence 54 455555666666 555555443333 2334555566666666666666663 666666666666
Q ss_pred ccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Q 013299 365 QKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQV 420 (446)
Q Consensus 365 ~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~ 420 (446)
.|++++|+..+.+++..+| ++..+++.+|.++...|++++|++.|+++++++|.
T Consensus 255 ~~~~~~a~~~~~~~~~~~p--~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~ 308 (334)
T d1dcea1 255 LQSELESCKELQELEPENK--WCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM 308 (334)
T ss_dssp HHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGG
T ss_pred HhhHHHHHHHHHHHHhhCc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcc
Confidence 6666666666666666666 56666666666666666666666666666666553
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.90 E-value=3.1e-24 Score=206.35 Aligned_cols=289 Identities=8% Similarity=-0.097 Sum_probs=229.3
Q ss_pred HHHHhHHHHHHhCChHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHH
Q 013299 65 AVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILL 144 (446)
Q Consensus 65 a~~~l~~~~~~~g~~~eA~~~y~~al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~ 144 (446)
+...+.......+..++|+..|+++|+. +|++.... .....++.... ..+..+...+++++|+..
T Consensus 31 ~~~~~~~~~~~~~~~~~al~~~~~~l~~----~P~~~~a~-~~r~~~l~~l~----------~~~~~~~~~~~~~~al~~ 95 (334)
T d1dcea1 31 ATQAVFQKRQAGELDESVLELTSQILGA----NPDFATLW-NCRREVLQHLE----------TEKSPEESAALVKAELGF 95 (334)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHH----CTTCHHHH-HHHHHHHHHHH----------TTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHH----CCCcHHHH-HHHHHHHHHHh----------hhcchHHHHHHHHHHHHH
Confidence 3344444444455569999999999999 66654332 11111111100 112234445667888876
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHhhCCCCCCcHHHHH-HHHHHHHHCCChHHHHHHHHHH
Q 013299 145 LMILLRKVALKRIEWDPSILDHLSFAFSIAGD--LSSLATQIEELLPGIINRKERYH-ILALCYYGAGEDLVALNLLRTL 221 (446)
Q Consensus 145 l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~--~~~A~~~~~~al~~~p~~~~~~~-~lg~~~~~~g~~~eA~~~~~~a 221 (446)
+ +.++..+|+++.+|.++|.++...++ +++|+..+++++..+|.+..+|. .+|.++...|++++|+..++++
T Consensus 96 ~-----~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~ 170 (334)
T d1dcea1 96 L-----ESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSL 170 (334)
T ss_dssp H-----HHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTT
T ss_pred H-----HHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHH
Confidence 5 66788999999999999999998875 89999999999999999999874 6789999999999999999999
Q ss_pred hcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHH
Q 013299 222 LSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKA 301 (446)
Q Consensus 222 l~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA 301 (446)
+ ..+|++..++..+|.++ ...|++++|+..+++++...+.. ....... . ..+..+++
T Consensus 171 i--~~~p~~~~a~~~l~~~~-~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~~----~-----------~l~~~~~a 227 (334)
T d1dcea1 171 I--TRNFSNYSSWHYRSCLL-PQLHPQPDSGPQGRLPENVLLKE-----LELVQNA----F-----------FTDPNDQS 227 (334)
T ss_dssp T--TTTCCCHHHHHHHHHHH-HHHSCCCCSSSCCSSCHHHHHHH-----HHHHHHH----H-----------HHCSSCSH
T ss_pred H--HcCCCCHHHHHHHHHHH-HHhcCHHHHHHHHHHhHHhHHHH-----HHHHHHH----H-----------HhcchhHH
Confidence 9 99999999999887665 44788888888888887754321 1111111 1 12345789
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 013299 302 LQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQ 381 (446)
Q Consensus 302 l~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 381 (446)
...|.+++ ..+|.++.++..+|.++...|++++|+..+.+++..+|++ ..+|..+|.++..+|++++|+.+|++++++
T Consensus 228 ~~~~~~~l-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l 305 (334)
T d1dcea1 228 AWFYHRWL-LGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWC-LLTIILLMRALDPLLYEKETLQYFSTLKAV 305 (334)
T ss_dssp HHHHHHHH-HSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999 9999999999999999999999999999999999999998 599999999999999999999999999999
Q ss_pred cCCCCcHHHHHHHHHHHHH
Q 013299 382 TGKWEQGELLRTKAKVQLV 400 (446)
Q Consensus 382 ~p~~~~~~~~~~~a~~~~~ 400 (446)
+| ++...|..++..+.-
T Consensus 306 dP--~~~~y~~~L~~~~~~ 322 (334)
T d1dcea1 306 DP--MRAAYLDDLRSKFLL 322 (334)
T ss_dssp CG--GGHHHHHHHHHHHHH
T ss_pred Cc--ccHHHHHHHHHHHhH
Confidence 99 889998888877764
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.88 E-value=8.3e-22 Score=181.36 Aligned_cols=176 Identities=13% Similarity=0.023 Sum_probs=127.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHH
Q 013299 157 IEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLI 236 (446)
Q Consensus 157 ~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~ 236 (446)
+|+++.+|+.+|.++...|++++|+.+|+++++++|+++.+|+++|.++..+|++++|+..|++++ ..+|++......
T Consensus 67 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al--~~~p~~~~~~~~ 144 (259)
T d1xnfa_ 67 RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFY--QDDPNDPFRSLW 144 (259)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHH
T ss_pred CCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHH--hhccccHHHHHH
Confidence 477788888899999999999999999999999999999999999999999999999999999999 788888876655
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCC
Q 013299 237 ASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRD 316 (446)
Q Consensus 237 ~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~ 316 (446)
++.. ....+..+.+......... .++... ........+|... ..+..+.+...+.... ...|+.
T Consensus 145 ~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~-~~~~~~ 208 (259)
T d1xnfa_ 145 LYLA-EQKLDEKQAKEVLKQHFEK-SDKEQW-GWNIVEFYLGNIS------------EQTLMERLKADATDNT-SLAEHL 208 (259)
T ss_dssp HHHH-HHHHCHHHHHHHHHHHHHH-SCCCST-HHHHHHHHTTSSC------------HHHHHHHHHHHCCSHH-HHHHHH
T ss_pred HHHH-HHHhhhHHHHHHHHHHhhc-cchhhh-hhhHHHHHHHHHH------------HHHHHHHHHHHHHHhh-hcCccc
Confidence 4433 3333444333333333333 333221 1122233333321 1245677777888888 888888
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Q 013299 317 LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS 350 (446)
Q Consensus 317 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~ 350 (446)
+.+++++|.++..+|++++|+.+|++|+..+|++
T Consensus 209 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 242 (259)
T d1xnfa_ 209 SETNFYLGKYYLSLGDLDSATALFKLAVANNVHN 242 (259)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 8888888888888888888888888888888886
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.88 E-value=5.3e-22 Score=182.73 Aligned_cols=207 Identities=11% Similarity=-0.003 Sum_probs=163.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHH
Q 013299 158 EWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIA 237 (446)
Q Consensus 158 p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~ 237 (446)
|..+.+++.+|.++...|++++|++.|++++.++|+++.+|+++|.++..+|++++|+..|++++ .++|+++.+++.+
T Consensus 34 ~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al--~~~p~~~~a~~~l 111 (259)
T d1xnfa_ 34 DERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVL--ELDPTYNYAHLNR 111 (259)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHH--HHHhhhhhhHHHH
Confidence 34567999999999999999999999999999999999999999999999999999999999999 8999999999988
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCH
Q 013299 238 SKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDL 317 (446)
Q Consensus 238 ~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~ 317 (446)
|.++. ..|++++|+..++++++..|.+ ...+..++.++... +..+.+........ ..++.++
T Consensus 112 g~~~~-~~g~~~~A~~~~~~al~~~p~~-----~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~-~~~~~~~ 173 (259)
T d1xnfa_ 112 GIALY-YGGRDKLAQDDLLAFYQDDPND-----PFRSLWLYLAEQKL-----------DEKQAKEVLKQHFE-KSDKEQW 173 (259)
T ss_dssp HHHHH-HTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHH-----------CHHHHHHHHHHHHH-HSCCCST
T ss_pred HHHHH-HHhhHHHHHHHHHHHHhhcccc-----HHHHHHHHHHHHHh-----------hhHHHHHHHHHHhh-ccchhhh
Confidence 87655 4799999999999999976544 33445555554332 22333334444444 5555554
Q ss_pred HH---HHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcH
Q 013299 318 SI---LYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQG 388 (446)
Q Consensus 318 ~a---~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 388 (446)
.. .+.++. ....+.++.+...+..+..+.|+. ..+|+++|.++..+|++++|+.+|++|+..+| ++.
T Consensus 174 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~ 243 (259)
T d1xnfa_ 174 GWNIVEFYLGN-ISEQTLMERLKADATDNTSLAEHL-SETNFYLGKYYLSLGDLDSATALFKLAVANNV--HNF 243 (259)
T ss_dssp HHHHHHHHTTS-SCHHHHHHHHHHHCCSHHHHHHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC--TTC
T ss_pred hhhHHHHHHHH-HHHHHHHHHHHHHHHHhhhcCccc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC--CCH
Confidence 21 111111 123445777888888888889988 59999999999999999999999999999999 554
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.84 E-value=6e-19 Score=167.36 Aligned_cols=321 Identities=15% Similarity=0.053 Sum_probs=227.5
Q ss_pred hhHHHHHHHHHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHH
Q 013299 3 IHAISLLLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRET 82 (446)
Q Consensus 3 ~~~~~~~~~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA 82 (446)
|+.=.+-++....+|.++...|++++|++.|+++|+.. |.+.. .....++..+|.++...|++++|
T Consensus 5 ~~~~~~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~--------~~~~~------~~~~~a~~~lg~~~~~~g~~~~A 70 (366)
T d1hz4a_ 5 IREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEEL--------PPGWF------YSRIVATSVLGEVLHCKGELTRS 70 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--------CTTCH------HHHHHHHHHHHHHHHHHTCHHHH
T ss_pred ccccchhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--------cCCCc------HHHHHHHHHHHHHHHHCCCHHHH
Confidence 34445668889999999999999999999999999862 33210 11235778899999999999999
Q ss_pred HHHHHHHhCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHH
Q 013299 83 IMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPS 162 (446)
Q Consensus 83 ~~~y~~al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~ 162 (446)
+..|+++++. .+.. +.. +....
T Consensus 71 ~~~~~~a~~~----~~~~-----------------------------------~~~-------------------~~~~~ 92 (366)
T d1hz4a_ 71 LALMQQTEQM----ARQH-----------------------------------DVW-------------------HYALW 92 (366)
T ss_dssp HHHHHHHHHH----HHHT-----------------------------------TCH-------------------HHHHH
T ss_pred HHHHHHHHHH----HHhh-----------------------------------cch-------------------HHHHH
Confidence 9999999987 2211 000 00122
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhCCC--------CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCC----
Q 013299 163 ILDHLSFAFSIAGDLSSLATQIEELLPG--------IINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKC---- 230 (446)
Q Consensus 163 ~~~~lg~~l~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~---- 230 (446)
++..++.++...|++..|...+.+++.+ .+.....+..+|.++...|+++.|...+++++ ...+..
T Consensus 93 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~ 170 (366)
T d1hz4a_ 93 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGI--EVLSSYQPQQ 170 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHTTTSCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHH--HHhhhhhhhh
Confidence 3456677777777888887777777643 23334567788999999999999999998888 444432
Q ss_pred -hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCc--chhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHH
Q 013299 231 -LPALLIASKICGEYPDLAEEGATFASRALECLGDGC--DQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVS 307 (446)
Q Consensus 231 -~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~--~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~ 307 (446)
..++...+..+. ..+...++...+.++........ ......++..+|..+.. .+++++|...+++
T Consensus 171 ~~~~~~~~~~~~~-~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~a~~~~~~ 238 (366)
T d1hz4a_ 171 QLQCLAMLIQCSL-ARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQM-----------TGDKAAAANWLRH 238 (366)
T ss_dssp GHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-----------TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHh-----------cccHHHHHHHHHH
Confidence 223344444433 45778888888888887544321 12234455566666644 3568899999999
Q ss_pred HHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------cCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 013299 308 AARSTNMRD----LSILYRLSLEYAEQRKLNAAHYYAKMLLKL------EGGSNLKGWLLMARILSAQKRYEDAETILNA 377 (446)
Q Consensus 308 al~~~~P~~----~~a~~~lg~~~~~~~~~~~A~~~~~~al~l------~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~ 377 (446)
++ ...|.+ ...+.++|.++...|++++|+..+++++.. .|+. ..++..+|.++..+|++++|+..+++
T Consensus 239 ~~-~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~l~~ 316 (366)
T d1hz4a_ 239 TA-KPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDL-NRNLLLLNQLYWQAGRKSDAQRVLLD 316 (366)
T ss_dssp SC-CCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH-HHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HH-HhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHH-HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99 888765 356778999999999999999999999854 4555 47899999999999999999999999
Q ss_pred HHhhcCCCC-------cHHHHHHHHHHHHHhCCHHHHHHHH
Q 013299 378 ALDQTGKWE-------QGELLRTKAKVQLVQGQLKGAVETY 411 (446)
Q Consensus 378 al~~~p~~~-------~~~~~~~~a~~~~~~g~~~eA~~~~ 411 (446)
|+++.+..+ ....+..+...+...|+.+++....
T Consensus 317 Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~~~ 357 (366)
T d1hz4a_ 317 ALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHR 357 (366)
T ss_dssp HHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHHHH
T ss_pred HHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 998754101 1233444555666778888876653
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.84 E-value=7.6e-20 Score=173.65 Aligned_cols=282 Identities=13% Similarity=-0.033 Sum_probs=216.8
Q ss_pred HHHHHHhHHHHHHhCChHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHH
Q 013299 63 NRAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAI 142 (446)
Q Consensus 63 ~~a~~~l~~~~~~~g~~~eA~~~y~~al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~ 142 (446)
.......+.+++..|++++|+..|+++|.. .|.+.. .
T Consensus 12 ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~----~~~~~~-----------------------------------~---- 48 (366)
T d1hz4a_ 12 AEFNALRAQVAINDGNPDEAERLAKLALEE----LPPGWF-----------------------------------Y---- 48 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----CCTTCH-----------------------------------H----
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhh----CcCCCc-----------------------------------H----
Confidence 344555678899999999999999999988 332100 0
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCc------HHHHHHHHHHHHHCCChHHHHH
Q 013299 143 LLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINR------KERYHILALCYYGAGEDLVALN 216 (446)
Q Consensus 143 ~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~eA~~ 216 (446)
....++..+|.++...|++++|+..|++++.+.|.. ..++..+|.++...|++..|+.
T Consensus 49 ----------------~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 112 (366)
T d1hz4a_ 49 ----------------SRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWE 112 (366)
T ss_dssp ----------------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ----------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 002356778999999999999999999998764433 4578889999999999999999
Q ss_pred HHHHHhcCCCCC-----C---ChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhh
Q 013299 217 LLRTLLSGSEDP-----K---CLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVA 288 (446)
Q Consensus 217 ~~~~al~~~~~P-----~---~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~ 288 (446)
.+.+++ .+.+ . ....+..++.++. ..|+++.+...+.+++...+.........++...+.++...
T Consensus 113 ~~~~al--~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 185 (366)
T d1hz4a_ 113 TQEKAF--QLINEQHLEQLPMHEFLVRIRAQLLW-AWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLAR---- 185 (366)
T ss_dssp HHHHHH--HHHHHTTCTTSTHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHH----
T ss_pred HHHHHH--HHhHhcccchhhHHHHHHHHHHHHHH-HhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhh----
Confidence 999988 3322 1 1223444555544 47899999999999999766544444456666677666543
Q ss_pred hchHHHHHHHHHHHHHHHHHHHhhCC-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC---HHHHHHH
Q 013299 289 ITDFDRATRQAKALQALVSAARSTNM-------RDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN---LKGWLLM 358 (446)
Q Consensus 289 ~~~~~~~~~~~eAl~~~~~al~~~~P-------~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~---~~~~~~l 358 (446)
+.+.++...+.++. .+.+ ....++..+|.++...|++++|...+++++.+.|.++ ...+.++
T Consensus 186 -------~~~~~a~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 257 (366)
T d1hz4a_ 186 -------GDLDNARSQLNRLE-NLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 257 (366)
T ss_dssp -------TCHHHHHHHHHHHH-HHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred -------hhHHHHHHHHHHHH-HHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 34566666666666 5432 3345778889999999999999999999999887653 2467789
Q ss_pred HHHHHHccCHHHHHHHHHHHHhh------cCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Q 013299 359 ARILSAQKRYEDAETILNAALDQ------TGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQV 420 (446)
Q Consensus 359 a~~~~~~g~~~eA~~~~~~al~~------~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~ 420 (446)
|.++..+|++++|+..+++++.. .| +...++..+|.++..+|++++|++.+++++++.+.
T Consensus 258 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~ 323 (366)
T d1hz4a_ 258 ARAQILLGEFEPAEIVLEELNENARSLRLMS--DLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR 323 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhcccCh--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999843 34 56788999999999999999999999999999764
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=1e-19 Score=184.35 Aligned_cols=96 Identities=10% Similarity=-0.021 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Q 013299 297 RQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILN 376 (446)
Q Consensus 297 ~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~ 376 (446)
+.++|+..+++++ ..+|. .++.++|.++...|++++|+.+|++|+.++|+++ .+|++||.++...|++.+|+.+|.
T Consensus 135 ~~~~A~~~~~~al-~~~~~--~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~-~~~~~Lg~~~~~~~~~~~A~~~y~ 210 (497)
T d1ya0a1 135 HTSAIVKPQSSSC-SYICQ--HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNG-QPYNQLAILASSKGDHLTTIFYYC 210 (497)
T ss_dssp --------CCHHH-HHHHH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBS-HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHh-CCCHH--HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCch-HHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3455555555555 44442 3444555555555555555555555555555553 555555555555555555555555
Q ss_pred HHHhhcCCCCcHHHHHHHHHHH
Q 013299 377 AALDQTGKWEQGELLRTKAKVQ 398 (446)
Q Consensus 377 ~al~~~p~~~~~~~~~~~a~~~ 398 (446)
+|+..+| +.+.++.+++.++
T Consensus 211 ral~~~~--~~~~a~~nL~~~~ 230 (497)
T d1ya0a1 211 RSIAVKF--PFPAASTNLQKAL 230 (497)
T ss_dssp HHHSSSB--CCHHHHHHHHHHH
T ss_pred HHHhCCC--CCHHHHHHHHHHH
Confidence 5555554 4555555554444
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=2.2e-18 Score=174.41 Aligned_cols=140 Identities=12% Similarity=-0.023 Sum_probs=65.6
Q ss_pred HHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchh
Q 013299 202 ALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISL 281 (446)
Q Consensus 202 g~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~ 281 (446)
+.+....|.|+.|+..|++++ .++|++..++..+|.. +...++.++|+..+++++... ...++.++|.++
T Consensus 93 ~~l~~a~~~Y~~ai~~l~~~~--~l~~~~~~~~~~lg~~-~~~~~~~~~A~~~~~~al~~~-------~~~~~~~LG~l~ 162 (497)
T d1ya0a1 93 LFLEAASGFYTQLLQELCTVF--NVDLPCRVKSSQLGII-SNKQTHTSAIVKPQSSSCSYI-------CQHCLVHLGDIA 162 (497)
T ss_dssp HHHHHHHHHHHHHHHHHTC----------------------------------CCHHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH--CCChhhHHHHHHhHHH-HHhCCCHHHHHHHHHHHhCCC-------HHHHHHHHHHHH
Confidence 344444555666666666666 5666666655554433 334556666666666665532 134556666665
Q ss_pred HhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Q 013299 282 SAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARI 361 (446)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~ 361 (446)
..+ +++++|+.+|++|+ +++|+++.++++||.++...|++.+|+.+|.+|+.++|.++ .++.+|+.+
T Consensus 163 ~~~-----------~~~~~A~~~y~~A~-~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~-~a~~nL~~~ 229 (497)
T d1ya0a1 163 RYR-----------NQTSQAESYYRHAA-QLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFP-AASTNLQKA 229 (497)
T ss_dssp HHT-----------TCHHHHHHHHHHHH-HHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCH-HHHHHHHHH
T ss_pred HHc-----------ccHHHHHHHHHHHH-HHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCH-HHHHHHHHH
Confidence 443 34666666666666 66666666666666666666666666666666666666663 666666665
Q ss_pred HHH
Q 013299 362 LSA 364 (446)
Q Consensus 362 ~~~ 364 (446)
+..
T Consensus 230 ~~~ 232 (497)
T d1ya0a1 230 LSK 232 (497)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.69 E-value=8.8e-17 Score=150.83 Aligned_cols=206 Identities=7% Similarity=-0.037 Sum_probs=160.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhCCCC------CCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCC------
Q 013299 163 ILDHLSFAFSIAGDLSSLATQIEELLPGI------INRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKC------ 230 (446)
Q Consensus 163 ~~~~lg~~l~~~~~~~~A~~~~~~al~~~------p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~------ 230 (446)
.|...|.++...|++++|+++|++++.+. ++-...|.++|.+|...|++++|+..|++++ .+.++.
T Consensus 39 ~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~--~~~~~~~~~~~~ 116 (290)
T d1qqea_ 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAI--QIFTHRGQFRRG 116 (290)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHTTCHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhh--HHhhhcccchhH
Confidence 45667899999999999999999999862 3445789999999999999999999999999 665554
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC-cchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHH
Q 013299 231 LPALLIASKICGEYPDLAEEGATFASRALECLGDG-CDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAA 309 (446)
Q Consensus 231 ~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~-~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al 309 (446)
..++..++.++....+++++|+.+|+++++..+.. .......++..+|.++... |++++|+..|++++
T Consensus 117 ~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~-----------g~y~~A~~~~~~~~ 185 (290)
T d1qqea_ 117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALD-----------GQYIEASDIYSKLI 185 (290)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHc-----------ChHHHHHHHHHHHH
Confidence 34566677777677899999999999999864332 2234466788889888664 67999999999999
Q ss_pred HhhCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHH-----HHHHHHHHHH--ccCHHHHHHHH
Q 013299 310 RSTNMRDL-------SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKG-----WLLMARILSA--QKRYEDAETIL 375 (446)
Q Consensus 310 ~~~~P~~~-------~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~-----~~~la~~~~~--~g~~~eA~~~~ 375 (446)
...|+++ ..++++|.++...|+++.|...+++++.++|..+ .. ...+...+.. .+++++|+..|
T Consensus 186 -~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~-~sre~~~l~~l~~a~~~~d~e~~~eai~~y 263 (290)
T d1qqea_ 186 -KSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFA-DSRESNFLKSLIDAVNEGDSEQLSEHCKEF 263 (290)
T ss_dssp -HTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----------HHHHHHHHHHHHTTCTTTHHHHHHHH
T ss_pred -HhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcc-chHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 9998875 4567889999999999999999999999999753 43 2334444433 45699999999
Q ss_pred HHHHhhcC
Q 013299 376 NAALDQTG 383 (446)
Q Consensus 376 ~~al~~~p 383 (446)
+++.+++|
T Consensus 264 ~~~~~lD~ 271 (290)
T d1qqea_ 264 DNFMRLDK 271 (290)
T ss_dssp TTSSCCCH
T ss_pred HHHhhcCH
Confidence 98887776
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.69 E-value=2.9e-15 Score=141.44 Aligned_cols=226 Identities=13% Similarity=-0.011 Sum_probs=163.9
Q ss_pred HHHHHHHhhCCCCCCcHHHHHHHHHHHHHC--------------CChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcC
Q 013299 179 SLATQIEELLPGIINRKERYHILALCYYGA--------------GEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEY 244 (446)
Q Consensus 179 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~--------------g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~ 244 (446)
.+...|++|+...|.+++.|+..+..+... +..++|...|+++++ ...|++...+...+.+ ...
T Consensus 34 Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~-~~~p~~~~l~~~ya~~-~~~ 111 (308)
T d2onda1 34 RVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIS-TLLKKNMLLYFAYADY-EES 111 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHT-TTTTTCHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHH-HcCCCCHHHHHHHHHH-HHh
Confidence 344456666666666666666655544322 234666677777772 2356666655554444 334
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 013299 245 PDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLS 324 (446)
Q Consensus 245 ~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg 324 (446)
.|+.++|...|+++++..|.+. ..+|..++.... +.+..++|...|++++ +..|.+...+...|
T Consensus 112 ~~~~~~a~~i~~~~l~~~~~~~----~~~w~~~~~~~~-----------~~~~~~~ar~i~~~al-~~~~~~~~~~~~~a 175 (308)
T d2onda1 112 RMKYEKVHSIYNRLLAIEDIDP----TLVYIQYMKFAR-----------RAEGIKSGRMIFKKAR-EDARTRHHVYVTAA 175 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCT----HHHHHHHHHHHH-----------HHHCHHHHHHHHHHHH-TSTTCCTHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhcCCh----HHHHHHHHHHHH-----------HcCChHHHHHHHHHHH-HhCCCcHHHHHHHH
Confidence 5667777777777776333221 234444444432 2456789999999999 99999999999999
Q ss_pred HHHHH-cCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCC-C-cHHHHHHHHHHHHHh
Q 013299 325 LEYAE-QRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKW-E-QGELLRTKAKVQLVQ 401 (446)
Q Consensus 325 ~~~~~-~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~-~-~~~~~~~~a~~~~~~ 401 (446)
..... .|+.+.|...|++++..+|++ ...|..++..+...|+++.|..+|++|+...|.+ + ...+|..........
T Consensus 176 ~~e~~~~~~~~~a~~i~e~~l~~~p~~-~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~ 254 (308)
T d2onda1 176 LMEYYCSKDKSVAFKIFELGLKKYGDI-PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNI 254 (308)
T ss_dssp HHHHHTSCCHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHc
Confidence 87554 689999999999999999999 5999999999999999999999999999976611 1 245677777888899
Q ss_pred CCHHHHHHHHHHHHHHHhhhhh
Q 013299 402 GQLKGAVETYTHLLAALQVQTK 423 (446)
Q Consensus 402 g~~~eA~~~~~~~l~l~~~~~~ 423 (446)
|+.+.+...++++.++.|...+
T Consensus 255 G~~~~~~~~~~r~~~~~~~~~~ 276 (308)
T d2onda1 255 GDLASILKVEKRRFTAFREEYE 276 (308)
T ss_dssp SCHHHHHHHHHHHHHHTTTTTS
T ss_pred CCHHHHHHHHHHHHHHCccccc
Confidence 9999999999999999986644
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=6.1e-16 Score=131.62 Aligned_cols=127 Identities=14% Similarity=0.038 Sum_probs=108.9
Q ss_pred HHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCH
Q 013299 273 ANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNL 352 (446)
Q Consensus 273 a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~ 352 (446)
.+...|..+.. .|++++|+..|++++ +++|+++.+|+++|.++..+|++++|+..|+++++++|++ .
T Consensus 12 ~l~~~gn~~~~-----------~~~y~~A~~~~~~al-~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~-~ 78 (159)
T d1a17a_ 12 ELKTQANDYFK-----------AKDYENAIKFYSQAI-ELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY-I 78 (159)
T ss_dssp HHHHHHHHHHH-----------TTCHHHHHHHHHHHH-HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-H
T ss_pred HHHHHHHHHHH-----------cCCHHHHHHHhhhcc-ccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccc-h
Confidence 34455666654 467999999999999 9999999999999999999999999999999999999999 5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHH--HHhCCHHHHHHHHHHH
Q 013299 353 KGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQ--LVQGQLKGAVETYTHL 414 (446)
Q Consensus 353 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~--~~~g~~~eA~~~~~~~ 414 (446)
.+|..+|.++..+|++++|+..+++++.++| ++..++..++.+. ...+.+++|+......
T Consensus 79 ~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p--~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~ 140 (159)
T d1a17a_ 79 KGYYRRAASNMALGKFRAALRDYETVVKVKP--HDKDAKMKYQECNKIVKQKAFERAIAGDEHK 140 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHHHHHHHHHHhCcHHH
Confidence 9999999999999999999999999999999 8889888777664 4445566666544333
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=3e-16 Score=126.51 Aligned_cols=100 Identities=18% Similarity=0.164 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHH
Q 013299 295 ATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETI 374 (446)
Q Consensus 295 ~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~ 374 (446)
.|++++|+..|++++ +++|+++.+|+++|.++..+|++++|+..|.+++.++|++ ..+|+++|.++..+|++++|+..
T Consensus 16 ~g~~~eAi~~~~~al-~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~g~~~~~~~~~~~A~~~ 93 (117)
T d1elwa_ 16 VGNIDDALQCYSEAI-KLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW-GKGYSRKAAALEFLNRFEEAKRT 93 (117)
T ss_dssp TTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHH-hcCCcchhhhhcccccccccccccccchhhhhHHHhccch-hhHHHHHHHHHHHccCHHHHHHH
Confidence 467899999999999 9999999999999999999999999999999999999999 59999999999999999999999
Q ss_pred HHHHHhhcCCCCcHHHHHHHHHHH
Q 013299 375 LNAALDQTGKWEQGELLRTKAKVQ 398 (446)
Q Consensus 375 ~~~al~~~p~~~~~~~~~~~a~~~ 398 (446)
|+++++.+| +++.++..++.+.
T Consensus 94 ~~~a~~~~p--~~~~~~~~l~~l~ 115 (117)
T d1elwa_ 94 YEEGLKHEA--NNPQLKEGLQNME 115 (117)
T ss_dssp HHHHHTTCT--TCHHHHHHHHHHH
T ss_pred HHHHHHhCC--CCHHHHHHHHHHh
Confidence 999999999 8999998887764
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=7.9e-16 Score=135.30 Aligned_cols=120 Identities=15% Similarity=0.055 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHH
Q 013299 296 TRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETIL 375 (446)
Q Consensus 296 ~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~ 375 (446)
+++++|++.|. ++.|.++.+|+++|.++..+|++++|+..|++|++++|++ +.+|.++|.++..+|+|++|+..|
T Consensus 19 ~d~~~Al~~~~----~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~-~~a~~~~g~~~~~~g~~~~A~~~~ 93 (192)
T d1hh8a_ 19 KDWKGALDAFS----AVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL-AVAYFQRGMLYYQTEKYDLAIKDL 93 (192)
T ss_dssp TCHHHHHHHHH----TSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHH----hcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhh-hhhHHHHHHHHHhhccHHHHHHHH
Confidence 57899999997 4567789999999999999999999999999999999999 599999999999999999999999
Q ss_pred HHHHhhcCCC--------------CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Q 013299 376 NAALDQTGKW--------------EQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQV 420 (446)
Q Consensus 376 ~~al~~~p~~--------------~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~ 420 (446)
++|+...|.+ ...++++++|.++..+|++++|++.+++++.+.|+
T Consensus 94 ~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~ 152 (192)
T d1hh8a_ 94 KEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 152 (192)
T ss_dssp HHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 9999875521 12578999999999999999999999999998765
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=1.5e-16 Score=139.97 Aligned_cols=165 Identities=10% Similarity=0.011 Sum_probs=129.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcC
Q 013299 165 DHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEY 244 (446)
Q Consensus 165 ~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~ 244 (446)
.+.|..+...|++++|++.|+++ .|.++.+|+++|.++..+|++++|+..|++|| +++|+++.++..+|.++ ..
T Consensus 9 ~~~g~~~~~~~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl--~ldp~~~~a~~~~g~~~-~~ 82 (192)
T d1hh8a_ 9 WNEGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSI--NRDKHLAVAYFQRGMLY-YQ 82 (192)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTS---SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHCCCHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHH--HHhhhhhhhHHHHHHHH-Hh
Confidence 46799999999999999999974 56678999999999999999999999999999 89999999999887665 55
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 013299 245 PDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLS 324 (446)
Q Consensus 245 ~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg 324 (446)
+|++++|+..|++++...+++.. ..+..+|. ...+...++++++|
T Consensus 83 ~g~~~~A~~~~~kAl~~~~~n~~----~~~~~~~~-------------------------------~~~~~~~e~~~n~a 127 (192)
T d1hh8a_ 83 TEKYDLAIKDLKEALIQLRGNQL----IDYKILGL-------------------------------QFKLFACEVLYNIA 127 (192)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSE----EECGGGTB-------------------------------CCEEEHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCccCch----HHHHHhhh-------------------------------hcccchHHHHHHHH
Confidence 79999999999999986554421 11112222 22233457888999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013299 325 LEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTG 383 (446)
Q Consensus 325 ~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 383 (446)
.++..+|++++|++.+++|+.++|+.. .+..+.|+..+.+.....|
T Consensus 128 ~~~~~~~~~~~A~~~l~~A~~~~~~~~-------------~~~~~~Al~~~~~~~~~~~ 173 (192)
T d1hh8a_ 128 FMYAKKEEWKKAEEQLALATSMKSEPR-------------HSKIDKAMECVWKQKLYEP 173 (192)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCCSGG-------------GGHHHHHHHHHHTTCCCCC
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCcc-------------hHHHHHHHHHHHhhhhCCc
Confidence 999999999999999999999998742 2344566666666555544
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=6.5e-16 Score=124.50 Aligned_cols=101 Identities=14% Similarity=0.021 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHH
Q 013299 318 SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKV 397 (446)
Q Consensus 318 ~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~ 397 (446)
.-+...|..+...|++++|+..|++++.++|++ ..+|.++|.++..+|++++|+..++++++++| +++.+|+++|.+
T Consensus 4 ~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~g~~ 80 (117)
T d1elwa_ 4 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHN-HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP--DWGKGYSRKAAA 80 (117)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc-hhhhhcccccccccccccccchhhhhHHHhcc--chhhHHHHHHHH
Confidence 346678999999999999999999999999999 59999999999999999999999999999999 899999999999
Q ss_pred HHHhCCHHHHHHHHHHHHHHHhhh
Q 013299 398 QLVQGQLKGAVETYTHLLAALQVQ 421 (446)
Q Consensus 398 ~~~~g~~~eA~~~~~~~l~l~~~~ 421 (446)
+..+|++++|+..|++++++.|.+
T Consensus 81 ~~~~~~~~~A~~~~~~a~~~~p~~ 104 (117)
T d1elwa_ 81 LEFLNRFEEAKRTYEEGLKHEANN 104 (117)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred HHHccCHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999997644
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.64 E-value=1.2e-15 Score=134.12 Aligned_cols=105 Identities=13% Similarity=-0.053 Sum_probs=72.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHH
Q 013299 316 DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKA 395 (446)
Q Consensus 316 ~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a 395 (446)
+++.+...|..+...|++++|+..|++|+.++|++ +.+|.++|.++..+|+|++|+.+|++|++++| ++..+|+++|
T Consensus 3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~-~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p--~~~~a~~~lg 79 (201)
T d2c2la1 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV-AVYYTNRALCYLKMQQPEQALADCRRALELDG--QSVKAHFFLG 79 (201)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT--TCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCC--CcHHHHHHHH
Confidence 34556666777777777777777777777777776 37777777777777777777777777777777 6677777777
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHhhhhh
Q 013299 396 KVQLVQGQLKGAVETYTHLLAALQVQTK 423 (446)
Q Consensus 396 ~~~~~~g~~~eA~~~~~~~l~l~~~~~~ 423 (446)
.++..+|++++|+..|++++++.|+...
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l~p~~~~ 107 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSLAKEQRL 107 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcccHH
Confidence 7777777777777777777777665443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.62 E-value=1.6e-15 Score=142.09 Aligned_cols=215 Identities=13% Similarity=0.016 Sum_probs=158.3
Q ss_pred CCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCC-----C-CChHHHHHHHHHHhcCCCCH
Q 013299 175 GDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSED-----P-KCLPALLIASKICGEYPDLA 248 (446)
Q Consensus 175 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~-----P-~~~~a~~~~~~~~~~~~~~~ 248 (446)
+++++|.++|.++ |.+|...|++++|+..|++++ .+. | +...++..+| .++...|++
T Consensus 31 ~~~~~Aa~~y~~a--------------a~~y~~~~~~~~A~~~y~kA~--~~~~~~~~~~~~a~~~~~~g-~~y~~~~~~ 93 (290)
T d1qqea_ 31 YKFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAA--DYQKKAGNEDEAGNTYVEAY-KCFKSGGNS 93 (290)
T ss_dssp HHHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHH--HHHHHTTCHHHHHHHHHHHH-HHHHHTTCH
T ss_pred ccHHHHHHHHHHH--------------HHHHHHCcCHHHHHHHHHHHH--HHHHHcCCCHHHHHHHHHHH-HHHHHhCCc
Confidence 3578887777654 899999999999999999999 542 2 2223455555 456678999
Q ss_pred HHHHHHHHHHHHHcCCC-cchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCC------HHHHH
Q 013299 249 EEGATFASRALECLGDG-CDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRD------LSILY 321 (446)
Q Consensus 249 ~eA~~~~~~al~~~~~~-~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~------~~a~~ 321 (446)
++|+.+++++++..+.. .......++..+|.++... .+++++|+..|++++ ++.+.+ ..++.
T Consensus 94 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~----------~~~~~~A~~~~~~A~-~l~~~~~~~~~~~~~~~ 162 (290)
T d1qqea_ 94 VNAVDSLENAIQIFTHRGQFRRGANFKFELGEILEND----------LHDYAKAIDCYELAG-EWYAQDQSVALSNKCFI 162 (290)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT----------TCCHHHHHHHHHHHH-HHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhH----------HHHHHHHHHHHHHHH-HHHHhcCchhhhhhHHH
Confidence 99999999999965432 2223356677777776432 357899999999999 875432 45688
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhcCCCCH------HHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHH-----H
Q 013299 322 RLSLEYAEQRKLNAAHYYAKMLLKLEGGSNL------KGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGE-----L 390 (446)
Q Consensus 322 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~------~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~-----~ 390 (446)
++|.++..+|++++|+..|++++...|..+. ..+...|.++...|+++.|...++++++.+| .... .
T Consensus 163 ~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~--~~~~sre~~~ 240 (290)
T d1qqea_ 163 KCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDP--NFADSRESNF 240 (290)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHH
T ss_pred HHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--CccchHHHHH
Confidence 9999999999999999999999999887631 3467788999999999999999999999988 3322 2
Q ss_pred HHHHHHHHHH--hCCHHHHHHHHHHHHHHHh
Q 013299 391 LRTKAKVQLV--QGQLKGAVETYTHLLAALQ 419 (446)
Q Consensus 391 ~~~~a~~~~~--~g~~~eA~~~~~~~l~l~~ 419 (446)
...+..++.. .+++++|+..|.++..++|
T Consensus 241 l~~l~~a~~~~d~e~~~eai~~y~~~~~lD~ 271 (290)
T d1qqea_ 241 LKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271 (290)
T ss_dssp HHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhhcCH
Confidence 2333334333 4568999999987766653
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.62 E-value=1.8e-15 Score=126.70 Aligned_cols=107 Identities=14% Similarity=0.078 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Q 013299 292 FDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQ----------RKLNAAHYYAKMLLKLEGGSNLKGWLLMARI 361 (446)
Q Consensus 292 ~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~----------~~~~~A~~~~~~al~l~P~~~~~~~~~la~~ 361 (446)
+++.+.+++|+..|++++ +++|+|+++++++|.++... +.+++|+..|++|++++|++ ..+|+++|.+
T Consensus 7 ~~r~~~fe~A~~~~e~al-~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~-~~a~~~lG~~ 84 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTY-KSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK-DEAVWCIGNA 84 (145)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHH-hhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchh-hHHHhhHHHH
Confidence 467789999999999999 99999999999999999854 55689999999999999999 5999999999
Q ss_pred HHHccC-----------HHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhC
Q 013299 362 LSAQKR-----------YEDAETILNAALDQTGKWEQGELLRTKAKVQLVQG 402 (446)
Q Consensus 362 ~~~~g~-----------~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g 402 (446)
+..+|+ |++|+.+|++|++++| ++...+..++.+....+
T Consensus 85 y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P--~~~~~~~~L~~~~ka~~ 134 (145)
T d1zu2a1 85 YTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP--DNTHYLKSLEMTAKAPQ 134 (145)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHTHHH
T ss_pred HHHcccchhhHHHHHHhHHHhhhhhhcccccCC--CHHHHHHHHHHHHHHHH
Confidence 988764 7999999999999999 88888888777654433
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.61 E-value=1.6e-13 Score=125.92 Aligned_cols=229 Identities=14% Similarity=0.065 Sum_probs=184.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH----CCChHHHHHHHHHHhcCCCCCCChHHHH
Q 013299 160 DPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYG----AGEDLVALNLLRTLLSGSEDPKCLPALL 235 (446)
Q Consensus 160 ~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~eA~~~~~~al~~~~~P~~~~a~~ 235 (446)
||.+++.+|..+...+++++|+++|+++.+. ++++++++||.+|.. ..++..|...++.+. .++++.+..
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~----~~~~~~a~~ 74 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKAC----DLNYSNGCH 74 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH----HTTCHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccc----cccccchhh
Confidence 6889999999999999999999999999764 689999999999998 679999999999988 556777777
Q ss_pred HHHHHHhc---CCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhh
Q 013299 236 IASKICGE---YPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARST 312 (446)
Q Consensus 236 ~~~~~~~~---~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~ 312 (446)
.++.+... .....+.|..+++++.+. .+ ..+...+|..+..... .......|+..+.+..
T Consensus 75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~-g~------~~a~~~l~~~~~~~~~-------~~~~~~~a~~~~~~~~--- 137 (265)
T d1ouva_ 75 LLGNLYYSGQGVSQNTNKALQYYSKACDL-KY------AEGCASLGGIYHDGKV-------VTRDFKKAVEYFTKAC--- 137 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TC------HHHHHHHHHHHHHCSS-------SCCCHHHHHHHHHHHH---
T ss_pred ccccccccccccchhhHHHHHHHhhhhhh-hh------hhHHHhhcccccCCCc-------ccchhHHHHHHhhhhh---
Confidence 66655443 246788999999999883 22 3455666655543111 0123567888887766
Q ss_pred CCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhhcCC
Q 013299 313 NMRDLSILYRLSLEYAE----QRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSA----QKRYEDAETILNAALDQTGK 384 (446)
Q Consensus 313 ~P~~~~a~~~lg~~~~~----~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~~~p~ 384 (446)
++.++.++++||.++.. ..+...+...++++.. +++ ..+++++|.++.. .+++++|+.+|+++.+.
T Consensus 138 ~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~-~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--- 211 (265)
T d1ouva_ 138 DLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACD--LKD-SPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--- 211 (265)
T ss_dssp HTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TTC-HHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT---
T ss_pred cccccchhhhhhhhhccCCCcccccccchhhhhcccc--ccc-cccccchhhhcccCcccccchhhhhhhHhhhhcc---
Confidence 47889999999999987 4688889999988864 567 4999999999987 67999999999999876
Q ss_pred CCcHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHH
Q 013299 385 WEQGELLRTKAKVQLV----QGQLKGAVETYTHLLAAL 418 (446)
Q Consensus 385 ~~~~~~~~~~a~~~~~----~g~~~eA~~~~~~~l~l~ 418 (446)
+++.+++++|.++.. ..++++|+++|+++.+.-
T Consensus 212 -g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 212 -ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp -TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred -cCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence 457899999999985 448999999999998874
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=6.5e-15 Score=125.11 Aligned_cols=102 Identities=11% Similarity=0.086 Sum_probs=96.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHH
Q 013299 320 LYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQL 399 (446)
Q Consensus 320 ~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~ 399 (446)
+...|..++..|++++|+..|++++.++|++ ..+|.++|.++..+|++++|+..|+++++++| ++..+|+.+|.++.
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p--~~~~a~~~~g~~~~ 89 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELNPSN-AIYYGNRSLAYLRTECYGYALGDATRAIELDK--KYIKGYYRRAASNM 89 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccchhh-hhhhhhhHHHHHhccccchHHHHHHHHHHHcc--cchHHHHHHHHHHH
Confidence 5567889999999999999999999999999 59999999999999999999999999999999 89999999999999
Q ss_pred HhCCHHHHHHHHHHHHHHHhhhhhh
Q 013299 400 VQGQLKGAVETYTHLLAALQVQTKT 424 (446)
Q Consensus 400 ~~g~~~eA~~~~~~~l~l~~~~~~~ 424 (446)
.+|++++|+..|++++.+.|.+..+
T Consensus 90 ~~g~~~eA~~~~~~a~~~~p~~~~~ 114 (159)
T d1a17a_ 90 ALGKFRAALRDYETVVKVKPHDKDA 114 (159)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred HcCCHHHHHHHHHHHHHcCCCCHHH
Confidence 9999999999999999998765543
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.60 E-value=8.7e-16 Score=135.01 Aligned_cols=100 Identities=17% Similarity=0.128 Sum_probs=93.2
Q ss_pred hHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Q 013299 271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS 350 (446)
Q Consensus 271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~ 350 (446)
+..+...|..+... |++++|+..|++|+ +++|+++.+|+++|.+|...|++++|+..|++|+.++|++
T Consensus 4 a~~l~~~Gn~~~~~-----------g~~~~Ai~~~~kal-~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~ 71 (201)
T d2c2la1 4 AQELKEQGNRLFVG-----------RKYPEAAACYGRAI-TRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS 71 (201)
T ss_dssp HHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC
T ss_pred HHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-HhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCc
Confidence 44566778888665 57999999999999 9999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013299 351 NLKGWLLMARILSAQKRYEDAETILNAALDQTG 383 (446)
Q Consensus 351 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 383 (446)
..+|+++|.++..+|+|++|+..|++|++++|
T Consensus 72 -~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p 103 (201)
T d2c2la1 72 -VKAHFFLGQCQLEMESYDEAIANLQRAYSLAK 103 (201)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 59999999999999999999999999999888
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.60 E-value=6e-14 Score=132.22 Aligned_cols=214 Identities=8% Similarity=-0.066 Sum_probs=174.6
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHh--------------cCCHHHHHHHHHhhCCC-CCCcHHHHHHHHHHHHHCCChHHHH
Q 013299 151 KVALKRIEWDPSILDHLSFAFSI--------------AGDLSSLATQIEELLPG-IINRKERYHILALCYYGAGEDLVAL 215 (446)
Q Consensus 151 ~~~l~~~p~~~~~~~~lg~~l~~--------------~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~eA~ 215 (446)
+.++...|.++++|..-+.-+.. .+..++|...|+++++. .|.+...|+.++.++...|++++|.
T Consensus 40 erAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~ 119 (308)
T d2onda1 40 EQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVH 119 (308)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHH
Confidence 55566679999999877665433 23458899999999974 8999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCChH-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHH
Q 013299 216 NLLRTLLSGSEDPKCLP-ALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDR 294 (446)
Q Consensus 216 ~~~~~al~~~~~P~~~~-a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~ 294 (446)
..|++++ ...|.+.. ++...+..+. ..+..++|...|+++++..|.+ ...+...+......
T Consensus 120 ~i~~~~l--~~~~~~~~~~w~~~~~~~~-~~~~~~~ar~i~~~al~~~~~~-----~~~~~~~a~~e~~~---------- 181 (308)
T d2onda1 120 SIYNRLL--AIEDIDPTLVYIQYMKFAR-RAEGIKSGRMIFKKAREDARTR-----HHVYVTAALMEYYC---------- 181 (308)
T ss_dssp HHHHHHH--TSSSSCTHHHHHHHHHHHH-HHHCHHHHHHHHHHHHTSTTCC-----THHHHHHHHHHHHT----------
T ss_pred HHHHHHH--HHhcCChHHHHHHHHHHHH-HcCChHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHHh----------
Confidence 9999999 88998755 5555555543 4678999999999999955443 33444444332111
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC---HHHHHHHHHHHHHccCHHHH
Q 013299 295 ATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN---LKGWLLMARILSAQKRYEDA 371 (446)
Q Consensus 295 ~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~---~~~~~~la~~~~~~g~~~eA 371 (446)
.+..+.|...|++++ ..+|+++..|...+..+...|+++.|...|++|+...|.++ ...|..........|+.+.+
T Consensus 182 ~~~~~~a~~i~e~~l-~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~ 260 (308)
T d2onda1 182 SKDKSVAFKIFELGL-KKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASI 260 (308)
T ss_dssp SCCHHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHH
T ss_pred ccCHHHHHHHHHHHH-HhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence 245788999999999 99999999999999999999999999999999999877542 35788888888899999999
Q ss_pred HHHHHHHHhhcC
Q 013299 372 ETILNAALDQTG 383 (446)
Q Consensus 372 ~~~~~~al~~~p 383 (446)
..+++++.+..|
T Consensus 261 ~~~~~r~~~~~~ 272 (308)
T d2onda1 261 LKVEKRRFTAFR 272 (308)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHCc
Confidence 999999999998
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.57 E-value=1.1e-14 Score=116.05 Aligned_cols=95 Identities=13% Similarity=0.018 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHH
Q 013299 318 SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKV 397 (446)
Q Consensus 318 ~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~ 397 (446)
..++.+|.++...|++++|+..|++++.++|++ ..+|..+|.++...|++++|+.+++++++++| ++..+|+.+|.+
T Consensus 17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~~~a~~~la~~ 93 (112)
T d1hxia_ 17 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPER-EEAWRSLGLTQAENEKDGLAIIALNHARMLDP--KDIAVHAALAVS 93 (112)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhhhccccccc-chhhhhhhhhhhhhhhHHHhhccccccccccc--ccccchHHHHHH
Confidence 345788999999999999999999999999998 59999999999999999999999999999999 899999999999
Q ss_pred HHHhCCHHHHHHHHHHHH
Q 013299 398 QLVQGQLKGAVETYTHLL 415 (446)
Q Consensus 398 ~~~~g~~~eA~~~~~~~l 415 (446)
+..+|++++|++.+++.|
T Consensus 94 y~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 94 HTNEHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHh
Confidence 999999999999999875
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=9.3e-14 Score=119.32 Aligned_cols=132 Identities=14% Similarity=0.026 Sum_probs=112.0
Q ss_pred HHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCH---------------HHHHHHHHHHHHcCCHHHHH
Q 013299 273 ANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDL---------------SILYRLSLEYAEQRKLNAAH 337 (446)
Q Consensus 273 a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~---------------~a~~~lg~~~~~~~~~~~A~ 337 (446)
.+...|..++. .|++++|+..|++++ ...|.+. .++.++|.+|..+|++++|+
T Consensus 15 ~l~~~G~~~~~-----------~~~~~~Ai~~y~~al-~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~ 82 (170)
T d1p5qa1 15 IVKERGTVYFK-----------EGKYKQALLQYKKIV-SWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAI 82 (170)
T ss_dssp HHHHHHHHHHH-----------HTCHHHHHHHHHHHH-HHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHH-----------cCCHHHHHHHHHHHH-HHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhccccc
Confidence 34456666654 467999999999999 9988653 56778999999999999999
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHH-HHHHHHH
Q 013299 338 YYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVE-TYTHLLA 416 (446)
Q Consensus 338 ~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~-~~~~~l~ 416 (446)
.++++++.++|++ +.+|+.+|.++..+|+|++|+..|+++++++| ++..+...++.+....++..+... .|.+.++
T Consensus 83 ~~~~~al~~~p~~-~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P--~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~ 159 (170)
T d1p5qa1 83 ESCNKALELDSNN-EKGLSRRGEAHLAVNDFELARADFQKVLQLYP--NNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 159 (170)
T ss_dssp HHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS--SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhccccc-hhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 59999999999999999999999999999999 899999999999877777665543 3565555
Q ss_pred HHh
Q 013299 417 ALQ 419 (446)
Q Consensus 417 l~~ 419 (446)
...
T Consensus 160 ~~~ 162 (170)
T d1p5qa1 160 RLA 162 (170)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=2.1e-14 Score=116.27 Aligned_cols=104 Identities=12% Similarity=0.038 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhcCCCC-HHHHHHHHHHHHHccCHHH
Q 013299 295 ATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQR---KLNAAHYYAKMLLKLEGGSN-LKGWLLMARILSAQKRYED 370 (446)
Q Consensus 295 ~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~---~~~~A~~~~~~al~l~P~~~-~~~~~~la~~~~~~g~~~e 370 (446)
.+++++|.+.|++++ .++|+++++++++|.++...+ ++++|+..|++++..+|.+. ..+|+++|.++..+|+|++
T Consensus 12 ~~~l~~Ae~~Y~~aL-~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~~~ 90 (122)
T d1nzna_ 12 VEDLLKFEKKFQSEK-AAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 90 (122)
T ss_dssp HHHHHHHHHHHHHHH-HHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHH-hhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhHH
Confidence 467999999999999 999999999999999998755 55679999999999987642 2589999999999999999
Q ss_pred HHHHHHHHHhhcCCCCcHHHHHHHHHHHHHh
Q 013299 371 AETILNAALDQTGKWEQGELLRTKAKVQLVQ 401 (446)
Q Consensus 371 A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~ 401 (446)
|+.+|+++++++| ++..+...++.|..+.
T Consensus 91 A~~~~~~aL~~~P--~~~~A~~l~~~I~~~~ 119 (122)
T d1nzna_ 91 ALKYVRGLLQTEP--QNNQAKELERLIDKAM 119 (122)
T ss_dssp HHHHHHHHHHHCT--TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCc--CCHHHHHHHHHHHHHH
Confidence 9999999999999 8999999888777654
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.54 E-value=2.4e-14 Score=114.10 Aligned_cols=94 Identities=18% Similarity=0.047 Sum_probs=87.7
Q ss_pred HHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCH
Q 013299 273 ANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNL 352 (446)
Q Consensus 273 a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~ 352 (446)
.++.+|.++... |++++|+..|++++ +++|+++.+|+.+|.++...|++++|+.+|+++++++|++ .
T Consensus 18 ~~~~~g~~~~~~-----------g~~~~A~~~~~~al-~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~ 84 (112)
T d1hxia_ 18 NPMEEGLSMLKL-----------ANLAEAALAFEAVC-QKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD-I 84 (112)
T ss_dssp CHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-H
T ss_pred HHHHHHHHHHHH-----------hhhHHHHHHHhhhc-ccccccchhhhhhhhhhhhhhhHHHhhccccccccccccc-c
Confidence 356778887654 57899999999999 9999999999999999999999999999999999999999 5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHH
Q 013299 353 KGWLLMARILSAQKRYEDAETILNAAL 379 (446)
Q Consensus 353 ~~~~~la~~~~~~g~~~eA~~~~~~al 379 (446)
.+|..+|.++..+|++++|++++++.|
T Consensus 85 ~a~~~la~~y~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 85 AVHAALAVSHTNEHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 999999999999999999999999986
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=9.2e-14 Score=119.33 Aligned_cols=138 Identities=13% Similarity=0.001 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHH
Q 013299 195 KERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTAN 274 (446)
Q Consensus 195 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~ 274 (446)
+..+...|..++..|+|++|+..|+++| ...|...... +. +. ..-.. ....++
T Consensus 13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al--~~~~~~~~~~-----------~~--~~--~~~~~----------~~~~~~ 65 (170)
T d1p5qa1 13 STIVKERGTVYFKEGKYKQALLQYKKIV--SWLEYESSFS-----------NE--EA--QKAQA----------LRLASH 65 (170)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHH--HHTTTCCCCC-----------SH--HH--HHHHH----------HHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHhhhccccc-----------hH--HH--hhhch----------hHHHHH
Confidence 4456678999999999999999999999 6666543210 00 00 00001 123567
Q ss_pred HHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHH
Q 013299 275 CLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKG 354 (446)
Q Consensus 275 ~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~ 354 (446)
.++|.||..+ |++++|+..+++++ +++|+++.+++.+|.++..+|++++|+..|+++++++|++ ..+
T Consensus 66 ~nla~~y~k~-----------~~~~~A~~~~~~al-~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n-~~~ 132 (170)
T d1p5qa1 66 LNLAMCHLKL-----------QAFSAAIESCNKAL-ELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN-KAA 132 (170)
T ss_dssp HHHHHHHHHT-----------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC-HHH
T ss_pred HHHHHHHHhh-----------hhcccccchhhhhh-hccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC-HHH
Confidence 8899998765 57899999999999 9999999999999999999999999999999999999999 499
Q ss_pred HHHHHHHHHHccCHHHHH
Q 013299 355 WLLMARILSAQKRYEDAE 372 (446)
Q Consensus 355 ~~~la~~~~~~g~~~eA~ 372 (446)
...++.+....+++.+..
T Consensus 133 ~~~l~~~~~~~~~~~~~e 150 (170)
T d1p5qa1 133 KTQLAVCQQRIRRQLARE 150 (170)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999988887777654
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.50 E-value=1.7e-13 Score=117.41 Aligned_cols=97 Identities=16% Similarity=0.067 Sum_probs=76.4
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCC
Q 013299 307 SAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWE 386 (446)
Q Consensus 307 ~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~ 386 (446)
+.. .++|.++.++.++|.++.++|++++|+..|++|++++|++ +.+|+.+|.++..+|+|++|+..|+++++++| +
T Consensus 68 ~~~-~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~-~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p--~ 143 (169)
T d1ihga1 68 DGA-KLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSN-TKALYRRAQGWQGLKEYDQALADLKKAQEIAP--E 143 (169)
T ss_dssp HHG-GGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--T
T ss_pred HHH-HhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhh-hhHHHhHHHHHHHccCHHHHHHHHHHHHHhCC--C
Confidence 344 6677778888888888888888888888888888888888 48888888888888888888888888888888 7
Q ss_pred cHHHHHHHHHHHHHhCCHHHH
Q 013299 387 QGELLRTKAKVQLVQGQLKGA 407 (446)
Q Consensus 387 ~~~~~~~~a~~~~~~g~~~eA 407 (446)
+..++..++.+........++
T Consensus 144 n~~~~~~l~~~~~~l~~~~~~ 164 (169)
T d1ihga1 144 DKAIQAELLKVKQKIKAQKDK 164 (169)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 777777777776655544443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.48 E-value=3.6e-13 Score=113.43 Aligned_cols=131 Identities=11% Similarity=-0.010 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHH
Q 013299 196 ERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANC 275 (446)
Q Consensus 196 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~ 275 (446)
..+...|..++..|+|.+|+..|+++| ..-|.... ..+.......+.+. ...+.
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al--~~~~~~~~--------------~~~~~~~~~~~~~~----------~~~~~ 71 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEAL--DFFIHTEE--------------WDDQILLDKKKNIE----------ISCNL 71 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH--HTTTTCTT--------------CCCHHHHHHHHHHH----------HHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH--hhCcchhh--------------hhhHHHHHhhhhHH----------HHHHh
Confidence 345667888888888888888888888 55443221 00011111111111 23556
Q ss_pred HhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHH
Q 013299 276 LLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGW 355 (446)
Q Consensus 276 ~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 355 (446)
++|.||... +++++|+..+++++ +++|+++.+|+++|.++..+|++++|+..|++++.++|++ ..++
T Consensus 72 Nla~~~~~l-----------~~~~~Al~~~~~al-~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n-~~~~ 138 (153)
T d2fbna1 72 NLATCYNKN-----------KDYPKAIDHASKVL-KIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN-LDIR 138 (153)
T ss_dssp HHHHHHHHT-----------TCHHHHHHHHHHHH-HHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC-HHHH
T ss_pred hHHHHHHHh-----------cccchhhhhhhccc-cccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHH
Confidence 666666543 45667777777777 7777777777777777777777777777777777777776 3666
Q ss_pred HHHHHHHHHc
Q 013299 356 LLMARILSAQ 365 (446)
Q Consensus 356 ~~la~~~~~~ 365 (446)
..++.+..++
T Consensus 139 ~~l~~~~~kl 148 (153)
T d2fbna1 139 NSYELCVNKL 148 (153)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666655443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.48 E-value=9.1e-14 Score=116.08 Aligned_cols=123 Identities=9% Similarity=-0.064 Sum_probs=92.6
Q ss_pred HHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHh
Q 013299 204 CYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSA 283 (446)
Q Consensus 204 ~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~ 283 (446)
.+.++++|++|+..|++++ .++|+++.+++.+|.+++.
T Consensus 6 ~~~r~~~fe~A~~~~e~al--~~~P~~~~~~~~~g~~l~~---------------------------------------- 43 (145)
T d1zu2a1 6 EFDRILLFEQIRQDAENTY--KSNPLDADNLTRWGGVLLE---------------------------------------- 43 (145)
T ss_dssp SHHHHHHHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHH----------------------------------------
T ss_pred HHHHHccHHHHHHHHHHHH--hhCCcchHHHHHHHHHHHH----------------------------------------
Confidence 3556666777777777777 6777777777666655432
Q ss_pred hhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHhhcCCCCH
Q 013299 284 QSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRK-----------LNAAHYYAKMLLKLEGGSNL 352 (446)
Q Consensus 284 ~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~-----------~~~A~~~~~~al~l~P~~~~ 352 (446)
.+.... ..+..+.+++|+..|++|+ +++|+++.+++++|.+|..+|+ +++|+.+|++|+.++|++ .
T Consensus 44 ~~~~~~-~~e~~~~~~~Ai~~~~kAl-~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~-~ 120 (145)
T d1zu2a1 44 LSQFHS-ISDAKQMIQEAITKFEEAL-LIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN-T 120 (145)
T ss_dssp HHHHSC-HHHHHHHHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC-H
T ss_pred hhhhhh-hhHHHHHHHHHHHHHHHHH-HhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCH-H
Confidence 111000 0023456899999999999 9999999999999999988764 699999999999999999 4
Q ss_pred HHHHHHHHHHHHccCHHHH
Q 013299 353 KGWLLMARILSAQKRYEDA 371 (446)
Q Consensus 353 ~~~~~la~~~~~~g~~~eA 371 (446)
.++..++.+....+.+.++
T Consensus 121 ~~~~~L~~~~ka~~~~~e~ 139 (145)
T d1zu2a1 121 HYLKSLEMTAKAPQLHAEA 139 (145)
T ss_dssp HHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999998887666666664
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=2.9e-13 Score=110.43 Aligned_cols=100 Identities=14% Similarity=0.170 Sum_probs=86.0
Q ss_pred HHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Q 013299 272 TANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN 351 (446)
Q Consensus 272 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~ 351 (446)
..+-.+|..+... +++++|+.+|++++ +++|+++.+++++|.+|..+|++++|+..|++++.++|+++
T Consensus 5 ~~~k~~G~~~~~~-----------~~y~~Ai~~y~~al-~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~ 72 (128)
T d1elra_ 5 LKEKELGNDAYKK-----------KDFDTALKHYDKAK-ELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENR 72 (128)
T ss_dssp HHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-HhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccH
Confidence 3455678777654 57899999999999 99999999999999999999999999999999999999874
Q ss_pred ------HHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013299 352 ------LKGWLLMARILSAQKRYEDAETILNAALDQTG 383 (446)
Q Consensus 352 ------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 383 (446)
+.++..+|.++..++++++|+.+|++++..+|
T Consensus 73 ~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~ 110 (128)
T d1elra_ 73 EDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR 110 (128)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence 13566677888888999999999999999887
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=4.4e-14 Score=114.28 Aligned_cols=101 Identities=14% Similarity=-0.036 Sum_probs=88.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH---ccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHH
Q 013299 321 YRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSA---QKRYEDAETILNAALDQTGKWEQGELLRTKAKV 397 (446)
Q Consensus 321 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~---~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~ 397 (446)
-+++..+...+++++|++.|++++.++|++ ..+++++|+++.. .+++++|+..+++++..+|+++...+++++|.+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~-~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVS-KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCC-HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 356778888999999999999999999999 5999999999986 456678999999999988722335689999999
Q ss_pred HHHhCCHHHHHHHHHHHHHHHhhhh
Q 013299 398 QLVQGQLKGAVETYTHLLAALQVQT 422 (446)
Q Consensus 398 ~~~~g~~~eA~~~~~~~l~l~~~~~ 422 (446)
+..+|++++|+++|+++|++.|++.
T Consensus 82 y~~~g~~~~A~~~~~~aL~~~P~~~ 106 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQTEPQNN 106 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHhhhHHHHHHHHHHHHhCcCCH
Confidence 9999999999999999999975443
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.46 E-value=6.6e-13 Score=113.61 Aligned_cols=134 Identities=13% Similarity=0.071 Sum_probs=111.3
Q ss_pred HHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCH---------------HHHHHHHHHHHHcCCHHHHH
Q 013299 273 ANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDL---------------SILYRLSLEYAEQRKLNAAH 337 (446)
Q Consensus 273 a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~---------------~a~~~lg~~~~~~~~~~~A~ 337 (446)
.+...|..++.. |++.+|+..|++|+ ..-|... .++.++|.+|..+|++++|+
T Consensus 17 ~~~e~G~~~~~~-----------~~~~~A~~~Y~~al-~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai 84 (168)
T d1kt1a1 17 IVKEKGTVYFKG-----------GKYVQAVIQYGKIV-SWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAV 84 (168)
T ss_dssp HHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHc-----------CCHHHHHHHHHHHH-HHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccch
Confidence 344556666543 57899999999999 7655432 45678999999999999999
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHH-HHHHHHHHHHH
Q 013299 338 YYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLK-GAVETYTHLLA 416 (446)
Q Consensus 338 ~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~-eA~~~~~~~l~ 416 (446)
.++++++.++|++ ..+|+.+|.++..+|+|++|+..|+++++++| ++..++..++.+....++.. ...+.|.+.++
T Consensus 85 ~~~~~al~l~p~~-~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P--~n~~~~~~l~~~~~~~~~~~e~~kk~~~~~f~ 161 (168)
T d1kt1a1 85 ECCDKALGLDSAN-EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP--QNKAARLQIFMCQKKAKEHNERDRRTYANMFK 161 (168)
T ss_dssp HHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT--TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhcccch-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 9999999999999 59999999999999999999999999999999 89999999999887777664 45666776666
Q ss_pred HHhhh
Q 013299 417 ALQVQ 421 (446)
Q Consensus 417 l~~~~ 421 (446)
-.+++
T Consensus 162 ~~~~~ 166 (168)
T d1kt1a1 162 KFAEQ 166 (168)
T ss_dssp HHHTT
T ss_pred hhhhc
Confidence 65543
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.46 E-value=4.2e-13 Score=113.02 Aligned_cols=103 Identities=14% Similarity=0.027 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHH
Q 013299 295 ATRQAKALQALVSAARSTNMRDL----------------SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLM 358 (446)
Q Consensus 295 ~~~~~eAl~~~~~al~~~~P~~~----------------~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~l 358 (446)
.|++.+|+..|++++ .+-|... .++.++|.+|..+|++++|+.+|+++++++|++ +.+|+.+
T Consensus 30 ~~~y~~A~~~Y~~al-~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~-~ka~~~~ 107 (153)
T d2fbna1 30 KNEINEAIVKYKEAL-DFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNN-VKALYKL 107 (153)
T ss_dssp TTCHHHHHHHHHHHH-HTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHH
T ss_pred cCCHHHHHHHHHHHH-hhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccccchh-hhhhHHh
Confidence 357899999999999 8776543 367789999999999999999999999999999 6999999
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHh
Q 013299 359 ARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQ 401 (446)
Q Consensus 359 a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~ 401 (446)
|.++..+|++++|+..|+++++++| ++..+...++.+..+.
T Consensus 108 g~~~~~lg~~~~A~~~~~~al~l~P--~n~~~~~~l~~~~~kl 148 (153)
T d2fbna1 108 GVANMYFGFLEEAKENLYKAASLNP--NNLDIRNSYELCVNKL 148 (153)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 8999888887776554
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=2.9e-13 Score=110.44 Aligned_cols=99 Identities=12% Similarity=0.106 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCc-------HHH
Q 013299 318 SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQ-------GEL 390 (446)
Q Consensus 318 ~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~-------~~~ 390 (446)
..+-.+|..+...|++++|+.+|++++.++|++ ..+|.++|.++..+|+|++|+..++++++++| ++ ..+
T Consensus 5 ~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~--~~~~~~~~~a~~ 81 (128)
T d1elra_ 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTN-MTYITNQAAVYFEKGDYNKCRELCEKAIEVGR--ENREDYRQIAKA 81 (128)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH--HSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-HHHHHhHHHHHHHcCchHHHHHHHHHHHHhCc--ccHHHHHHHHHH
Confidence 456689999999999999999999999999999 59999999999999999999999999999988 43 356
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Q 013299 391 LRTKAKVQLVQGQLKGAVETYTHLLAALQ 419 (446)
Q Consensus 391 ~~~~a~~~~~~g~~~eA~~~~~~~l~l~~ 419 (446)
++.+|.++..+|++++|++.|++++...+
T Consensus 82 ~~~lg~~~~~~~~~~~A~~~~~kal~~~~ 110 (128)
T d1elra_ 82 YARIGNSYFKEEKYKDAIHFYNKSLAEHR 110 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence 78889999999999999999999998754
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.44 E-value=2e-11 Score=111.61 Aligned_cols=117 Identities=12% Similarity=0.107 Sum_probs=82.6
Q ss_pred CHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 013299 247 LAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLE 326 (446)
Q Consensus 247 ~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~ 326 (446)
....|...+.+.... .+ ..+++.+|.++...... ......+...++.+. + +.++.+++++|.+
T Consensus 125 ~~~~a~~~~~~~~~~--~~-----~~~~~~L~~~~~~~~~~-------~~~~~~~~~~~~~a~-~--~g~~~A~~~lg~~ 187 (265)
T d1ouva_ 125 DFKKAVEYFTKACDL--ND-----GDGCTILGSLYDAGRGT-------PKDLKKALASYDKAC-D--LKDSPGCFNAGNM 187 (265)
T ss_dssp CHHHHHHHHHHHHHT--TC-----HHHHHHHHHHHHHTSSS-------CCCHHHHHHHHHHHH-H--TTCHHHHHHHHHH
T ss_pred hhHHHHHHhhhhhcc--cc-----cchhhhhhhhhccCCCc-------ccccccchhhhhccc-c--ccccccccchhhh
Confidence 344555555555442 11 34566666665432110 123467777888877 4 6789999999999
Q ss_pred HHH----cCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhhcC
Q 013299 327 YAE----QRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSA----QKRYEDAETILNAALDQTG 383 (446)
Q Consensus 327 ~~~----~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~~~p 383 (446)
+.. ..++++|+.+|+++.+. ++ ..++++||.++.. .+++++|+.+|++|....+
T Consensus 188 y~~g~~~~~d~~~A~~~~~~aa~~--g~-~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 188 YHHGEGATKNFKEALARYSKACEL--EN-GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHTCSSCCCHHHHHHHHHHHHHT--TC-HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred cccCcccccchhhhhhhHhhhhcc--cC-HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 887 67899999999999886 45 4899999999986 4479999999999988755
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.44 E-value=3.5e-12 Score=108.95 Aligned_cols=147 Identities=12% Similarity=0.029 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHH
Q 013299 195 KERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTAN 274 (446)
Q Consensus 195 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~ 274 (446)
+..+...|..++..|+|.+|+..|++|| ...|..... ..+.. ... ......++
T Consensus 15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al--~~~~~~~~~-------------~~~~~-~~~-----------~~~~~~~~ 67 (168)
T d1kt1a1 15 AAIVKEKGTVYFKGGKYVQAVIQYGKIV--SWLEMEYGL-------------SEKES-KAS-----------ESFLLAAF 67 (168)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHHTTCCSC-------------CHHHH-HHH-----------HHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHhhcc-------------chhhh-hhc-----------chhHHHHH
Confidence 4556778999999999999999999999 544432210 00000 000 01224578
Q ss_pred HHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHH
Q 013299 275 CLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKG 354 (446)
Q Consensus 275 ~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~ 354 (446)
.++|.||..+ +++++|+..+++++ .++|+++.+++++|.++..+|++++|+..|++++.++|++ ..+
T Consensus 68 ~Nla~~~~~l-----------~~~~~Ai~~~~~al-~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n-~~~ 134 (168)
T d1kt1a1 68 LNLAMCYLKL-----------REYTKAVECCDKAL-GLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN-KAA 134 (168)
T ss_dssp HHHHHHHHHT-----------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC-HHH
T ss_pred HhHHHHHHHh-----------hhcccchhhhhhhh-hcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHH
Confidence 8899999765 57999999999999 9999999999999999999999999999999999999999 499
Q ss_pred HHHHHHHHHHccCHHH-HHHHHHHHHhh
Q 013299 355 WLLMARILSAQKRYED-AETILNAALDQ 381 (446)
Q Consensus 355 ~~~la~~~~~~g~~~e-A~~~~~~al~~ 381 (446)
+..++.+....+.+.+ ....|.+..+.
T Consensus 135 ~~~l~~~~~~~~~~~e~~kk~~~~~f~~ 162 (168)
T d1kt1a1 135 RLQIFMCQKKAKEHNERDRRTYANMFKK 162 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 9999999888877664 33445544443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.39 E-value=1.3e-12 Score=111.84 Aligned_cols=100 Identities=11% Similarity=0.014 Sum_probs=84.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh----------------hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCC
Q 013299 321 YRLSLEYAEQRKLNAAHYYAKMLLK----------------LEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGK 384 (446)
Q Consensus 321 ~~lg~~~~~~~~~~~A~~~~~~al~----------------l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~ 384 (446)
...|..+...|++++|+..|++++. ++|.. ..+|.++|.++..+|+|++|+..|+++++++|
T Consensus 31 ~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~-~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p- 108 (169)
T d1ihga1 31 KNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVA-LSCVLNIGACKLKMSDWQGAVDSCLEALEIDP- 108 (169)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhh-HHHHHHHHHHHHhhcccchhhhhhhhhhhhhh-
Confidence 3455566666666666666666654 56666 58899999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhh
Q 013299 385 WEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTK 423 (446)
Q Consensus 385 ~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~ 423 (446)
+++.+|+++|.++..+|++++|+..|++++++.|++..
T Consensus 109 -~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~ 146 (169)
T d1ihga1 109 -SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKA 146 (169)
T ss_dssp -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred -hhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Confidence 89999999999999999999999999999999876543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=99.37 E-value=1.4e-12 Score=110.07 Aligned_cols=112 Identities=9% Similarity=0.054 Sum_probs=93.6
Q ss_pred HHHHHHH--HHHHHHcCCHHHHHHHHHHHHhhcCCCC-----------HHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013299 317 LSILYRL--SLEYAEQRKLNAAHYYAKMLLKLEGGSN-----------LKGWLLMARILSAQKRYEDAETILNAALDQTG 383 (446)
Q Consensus 317 ~~a~~~l--g~~~~~~~~~~~A~~~~~~al~l~P~~~-----------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 383 (446)
..++..+ |..+...|++++|+..|++|++++|+.+ +.+|.++|.++..+|+|++|+..+++++++.|
T Consensus 7 a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~ 86 (156)
T d2hr2a1 7 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN 86 (156)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccc
Confidence 3455555 7788899999999999999999998753 25789999999999999999999999998754
Q ss_pred C----C-C----cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhccCC
Q 013299 384 K----W-E----QGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSD 428 (446)
Q Consensus 384 ~----~-~----~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~~~~~ 428 (446)
+ + + ...+++++|.++..+|++++|++.|++++++.|+.....+..
T Consensus 87 ~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~~~~~~ 140 (156)
T d2hr2a1 87 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGK 140 (156)
T ss_dssp HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTH
T ss_pred ccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhchHHHH
Confidence 1 0 1 245789999999999999999999999999998877655443
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=3e-11 Score=92.70 Aligned_cols=84 Identities=7% Similarity=0.006 Sum_probs=74.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHH
Q 013299 316 DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN------LKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGE 389 (446)
Q Consensus 316 ~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~ 389 (446)
+++-.|.+|.++.++|++++|+..|++|+++.|.++ ..++.++|.++..+|++++|+.+|+++|+++| ++..
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P--~~~~ 81 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP--EHQR 81 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCc--CCHH
Confidence 356789999999999999999999999999987642 36899999999999999999999999999999 8999
Q ss_pred HHHHHHHHHHHh
Q 013299 390 LLRTKAKVQLVQ 401 (446)
Q Consensus 390 ~~~~~a~~~~~~ 401 (446)
++.+++.+...+
T Consensus 82 a~~Nl~~~~~~l 93 (95)
T d1tjca_ 82 ANGNLKYFEYIM 93 (95)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999987766544
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=99.19 E-value=9e-12 Score=114.23 Aligned_cols=127 Identities=14% Similarity=0.026 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHH
Q 013299 295 ATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETI 374 (446)
Q Consensus 295 ~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~ 374 (446)
.|++++|+..|++++ +.+|+|+.++.++|.++...|++++|+..|+++++++|++ ..++..++.++...+..+++...
T Consensus 9 ~G~l~eAl~~l~~al-~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~-~~~~~~l~~ll~a~~~~~~a~~~ 86 (264)
T d1zbpa1 9 EGQLQQALELLIEAI-KASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY-LPGASQLRHLVKAAQARKDFAQG 86 (264)
T ss_dssp TTCHHHHHHHHHHHH-HTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHhccccHHHHHH
Confidence 478999999999999 9999999999999999999999999999999999999999 59999999999988888887766
Q ss_pred HHHHHhh-cCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhc
Q 013299 375 LNAALDQ-TGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTF 425 (446)
Q Consensus 375 ~~~al~~-~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~~ 425 (446)
+.+.... .| +....+...+.++...|+.++|.+.++++.++.|.....+
T Consensus 87 ~~~~~~~~~p--~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~ 136 (264)
T d1zbpa1 87 AATAKVLGEN--EELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLA 136 (264)
T ss_dssp CCCEECCCSC--HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEE
T ss_pred hhhhhcccCc--hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCccc
Confidence 5554333 45 6778888899999999999999999999999998865543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=99.18 E-value=3.7e-11 Score=101.02 Aligned_cols=88 Identities=15% Similarity=-0.008 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCH------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC----------H
Q 013299 295 ATRQAKALQALVSAARSTNMRDL------------SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN----------L 352 (446)
Q Consensus 295 ~~~~~eAl~~~~~al~~~~P~~~------------~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~----------~ 352 (446)
.|++++|+..|++++ +++|+.+ .+|.++|.+|..+|++++|+..+++++.+.|+.. .
T Consensus 22 ~g~y~~Ai~~y~~Al-~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 100 (156)
T d2hr2a1 22 AGEYDEAAANCRRAM-EISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWI 100 (156)
T ss_dssp HTCHHHHHHHHHHHH-HHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHH
T ss_pred cCCHHHHHHHHHHHH-HhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhH
Confidence 467999999999999 9998754 5788999999999999999999999999865310 2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013299 353 KGWLLMARILSAQKRYEDAETILNAALDQTG 383 (446)
Q Consensus 353 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 383 (446)
.+++++|.++..+|++++|+..|++|+++.|
T Consensus 101 ~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~ 131 (156)
T d2hr2a1 101 SAVYSRALALDGLGRGAEAMPEFKKVVEMIE 131 (156)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3688999999999999999999999999876
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.10 E-value=7.1e-11 Score=90.52 Aligned_cols=77 Identities=19% Similarity=0.080 Sum_probs=69.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCC-------cHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChH
Q 013299 160 DPSILDHLSFAFSIAGDLSSLATQIEELLPGIIN-------RKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLP 232 (446)
Q Consensus 160 ~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~ 232 (446)
+++-++.+|.++.+.|++++|+..|++|+++.|. ..+++++||.++.+.|++++|+..|+++| +++|+++.
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL--~l~P~~~~ 81 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL--ELDPEHQR 81 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHH--HhCcCCHH
Confidence 3566789999999999999999999999977554 36889999999999999999999999999 89999999
Q ss_pred HHHHHH
Q 013299 233 ALLIAS 238 (446)
Q Consensus 233 a~~~~~ 238 (446)
++.+++
T Consensus 82 a~~Nl~ 87 (95)
T d1tjca_ 82 ANGNLK 87 (95)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887654
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.00 E-value=3.4e-09 Score=90.86 Aligned_cols=109 Identities=13% Similarity=0.018 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC---------------------HHHHHHHHHHHHHccCHHHHHHHH
Q 013299 317 LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN---------------------LKGWLLMARILSAQKRYEDAETIL 375 (446)
Q Consensus 317 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~---------------------~~~~~~la~~~~~~g~~~eA~~~~ 375 (446)
..++...|..+...|++++|+..|.+|+.+.|+.. ..++..++.++..+|++++|+.++
T Consensus 11 f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~ 90 (179)
T d2ff4a2 11 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAEL 90 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHH
Confidence 45566666666777777777777777777665431 367889999999999999999999
Q ss_pred HHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhccCCcc
Q 013299 376 NAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKR 430 (446)
Q Consensus 376 ~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~~~~~~~ 430 (446)
+++++.+| .+..+|..++.++...|++.+|+..|+++.....+ ..|..|-
T Consensus 91 ~~al~~~P--~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~---eLG~~P~ 140 (179)
T d2ff4a2 91 EALTFEHP--YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLAD---DLGIDPG 140 (179)
T ss_dssp HHHHHHST--TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH---HHSCCCC
T ss_pred HHHHHhCC--ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH---HhCCCcC
Confidence 99999999 89999999999999999999999999999887643 3444443
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.93 E-value=4.9e-10 Score=102.43 Aligned_cols=130 Identities=12% Similarity=-0.051 Sum_probs=98.2
Q ss_pred HHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHH
Q 013299 171 FSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEE 250 (446)
Q Consensus 171 l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~e 250 (446)
....|++++|++.|+++++.+|+++.++..||.+|...|++++|+..|++++ +++|++..++..++.+...
T Consensus 6 aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~--~l~P~~~~~~~~l~~ll~a------- 76 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSI--KLFPEYLPGASQLRHLVKA------- 76 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH--HHCGGGHHHHHHHHHHHHH-------
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH--HhCCCcHHHHHHHHHHHHh-------
Confidence 4567999999999999999999999999999999999999999999999999 8999888776654433211
Q ss_pred HHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHH-HHhhCCCCHHHHHHHHHHHHH
Q 013299 251 GATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSA-ARSTNMRDLSILYRLSLEYAE 329 (446)
Q Consensus 251 A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~a-l~~~~P~~~~a~~~lg~~~~~ 329 (446)
.. ..+++...+.+. + ..+|++...+...+.++..
T Consensus 77 -~~-------------------------------------------~~~~a~~~~~~~~~-~~~p~~~~~~l~~a~~~~~ 111 (264)
T d1zbpa1 77 -AQ-------------------------------------------ARKDFAQGAATAKV-LGENEELTKSLVSFNLSMV 111 (264)
T ss_dssp -HH-------------------------------------------HHHHHTTSCCCEEC-CCSCHHHHHHHHHHHHHHH
T ss_pred -cc-------------------------------------------ccHHHHHHhhhhhc-ccCchHHHHHHHHHHHHHh
Confidence 01 112222222221 2 3456667777788888888
Q ss_pred cCCHHHHHHHHHHHHhhcCCCCHHHH
Q 013299 330 QRKLNAAHYYAKMLLKLEGGSNLKGW 355 (446)
Q Consensus 330 ~~~~~~A~~~~~~al~l~P~~~~~~~ 355 (446)
.|++++|+..++++.++.|..+ ..|
T Consensus 112 ~gd~~~A~~~~~~a~e~~p~~~-~~~ 136 (264)
T d1zbpa1 112 SQDYEQVSELALQIEELRQEKG-FLA 136 (264)
T ss_dssp HTCHHHHHHHHHHHHHHCCCCC-EEE
T ss_pred CCCHHHHHHHHHHHHhcCCCCC-ccc
Confidence 9999999999999999998874 443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.91 E-value=6.4e-09 Score=89.11 Aligned_cols=118 Identities=13% Similarity=-0.129 Sum_probs=82.6
Q ss_pred cHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHH
Q 013299 194 RKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTA 273 (446)
Q Consensus 194 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a 273 (446)
..+.+...|..+...|++++|+..|.+|+ .+.|+++...+ . .+.+
T Consensus 10 ~f~~~~~~g~~~~~~g~~e~A~~~~~~AL--~l~rG~~l~~~-------~-~~~w------------------------- 54 (179)
T d2ff4a2 10 RFVAEKTAGVHAAAAGRFEQASRHLSAAL--REWRGPVLDDL-------R-DFQF------------------------- 54 (179)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH--TTCCSSTTGGG-------T-TSTT-------------------------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH--hhCcccccccC-------c-chHH-------------------------
Confidence 45678888999999999999999999999 88887642110 0 0000
Q ss_pred HHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHH
Q 013299 274 NCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLK 353 (446)
Q Consensus 274 ~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~ 353 (446)
...... .+.+....++.++|.++...|++++|+..+++++.++|.+ ..
T Consensus 55 ------------------------------~~~~r~-~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~-e~ 102 (179)
T d2ff4a2 55 ------------------------------VEPFAT-ALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYR-EP 102 (179)
T ss_dssp ------------------------------HHHHHH-HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HH
T ss_pred ------------------------------HHHHHH-HHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCcc-HH
Confidence 000111 2333345667777778888888888888888888888887 47
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHH
Q 013299 354 GWLLMARILSAQKRYEDAETILNAA 378 (446)
Q Consensus 354 ~~~~la~~~~~~g~~~eA~~~~~~a 378 (446)
+|..++.++..+|++.+|+..|+++
T Consensus 103 ~~~~l~~al~~~Gr~~eAl~~y~~~ 127 (179)
T d2ff4a2 103 LWTQLITAYYLSDRQSDALGAYRRV 127 (179)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 8888888888888888888887776
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.52 E-value=8.4e-07 Score=69.59 Aligned_cols=82 Identities=6% Similarity=-0.004 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHH
Q 013299 317 LSILYRLSLEYAEQR---KLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRT 393 (446)
Q Consensus 317 ~~a~~~lg~~~~~~~---~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~ 393 (446)
+++.|+.|+++.... +.++|+.+++.++..+|.+..++|++||..+.++|+|++|..+++++|+.+| ++..+...
T Consensus 35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP--~n~qA~~L 112 (124)
T d2pqrb1 35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER--NNKQVGAL 112 (124)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHH
T ss_pred cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCC--CcHHHHHH
Confidence 789999999999764 5578999999999999976348999999999999999999999999999999 89888777
Q ss_pred HHHHHHH
Q 013299 394 KAKVQLV 400 (446)
Q Consensus 394 ~a~~~~~ 400 (446)
+-.|..+
T Consensus 113 ~~~Ie~~ 119 (124)
T d2pqrb1 113 KSMVEDK 119 (124)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655543
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.41 E-value=5.3e-07 Score=70.77 Aligned_cols=84 Identities=12% Similarity=0.091 Sum_probs=68.3
Q ss_pred hHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 013299 271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDL-SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG 349 (446)
Q Consensus 271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~-~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~ 349 (446)
....|..|.++..-. ..++.++|+.++++++ +.+|.+. +.+|+||..|++.|++++|+.+++++|+++|+
T Consensus 35 ~qt~F~YAw~Lv~S~--------~~~d~~~gI~lLe~~~-~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~ 105 (124)
T d2pqrb1 35 IQSRFNYAWGLIKST--------DVNDERLGVKILTDIY-KEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 105 (124)
T ss_dssp HHHHHHHHHHHHHSS--------CHHHHHHHHHHHHHHH-HHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred cchHHHHHHHHHcCC--------cHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 456666666664321 1356899999999999 9999875 89999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 013299 350 SNLKGWLLMARILSA 364 (446)
Q Consensus 350 ~~~~~~~~la~~~~~ 364 (446)
+ ..+....-.|..+
T Consensus 106 n-~qA~~L~~~Ie~~ 119 (124)
T d2pqrb1 106 N-KQVGALKSMVEDK 119 (124)
T ss_dssp C-HHHHHHHHHHHHH
T ss_pred c-HHHHHHHHHHHHH
Confidence 9 4887776665433
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=98.37 E-value=5.1e-06 Score=66.66 Aligned_cols=110 Identities=17% Similarity=0.077 Sum_probs=76.8
Q ss_pred CHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 013299 247 LAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLE 326 (446)
Q Consensus 247 ~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~ 326 (446)
++++|+.+|+++.+. . + +.+.+.+|.... .+.++|+..|+++. + .+++.+.+.||.+
T Consensus 8 d~~~A~~~~~kaa~~-g-~-----~~a~~~l~~~~~-------------~~~~~a~~~~~~aa-~--~g~~~a~~~Lg~~ 64 (133)
T d1klxa_ 8 DLKKAIQYYVKACEL-N-E-----MFGCLSLVSNSQ-------------INKQKLFQYLSKAC-E--LNSGNGCRFLGDF 64 (133)
T ss_dssp HHHHHHHHHHHHHHT-T-C-----TTHHHHHHTCTT-------------SCHHHHHHHHHHHH-H--TTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHC-C-C-----hhhhhhhccccc-------------cCHHHHHHHHhhhh-c--ccchhhhhhHHHh
Confidence 566788888887773 2 1 235555654321 24578888888877 5 4678888888888
Q ss_pred HHH----cCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhhc
Q 013299 327 YAE----QRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSA----QKRYEDAETILNAALDQT 382 (446)
Q Consensus 327 ~~~----~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~~~ 382 (446)
|.. ..++++|+.+|+++... .+ ..+.+.||.++.. ..++++|+.+|++|.+..
T Consensus 65 y~~g~~~~~d~~~A~~~~~~aa~~--g~-~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 65 YENGKYVKKDLRKAAQYYSKACGL--ND-QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHCSSSCCCHHHHHHHHHHHHHT--TC-HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred hhhccccchhhHHHHHHHhhhhcc--Cc-chHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 775 45778888888888764 45 3777888888776 457888888888887664
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=98.35 E-value=4.3e-06 Score=67.14 Aligned_cols=111 Identities=17% Similarity=0.080 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH----ccCHHHH
Q 013299 296 TRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSA----QKRYEDA 371 (446)
Q Consensus 296 ~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~----~g~~~eA 371 (446)
.++++|+.+|+++. +. +++.+.++||.. ...+.++|+..++++.+. ++ ..+.+.||.++.. ..++++|
T Consensus 7 kd~~~A~~~~~kaa-~~--g~~~a~~~l~~~--~~~~~~~a~~~~~~aa~~--g~-~~a~~~Lg~~y~~g~~~~~d~~~A 78 (133)
T d1klxa_ 7 KDLKKAIQYYVKAC-EL--NEMFGCLSLVSN--SQINKQKLFQYLSKACEL--NS-GNGCRFLGDFYENGKYVKKDLRKA 78 (133)
T ss_dssp HHHHHHHHHHHHHH-HT--TCTTHHHHHHTC--TTSCHHHHHHHHHHHHHT--TC-HHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHH-HC--CChhhhhhhccc--cccCHHHHHHHHhhhhcc--cc-hhhhhhHHHhhhhccccchhhHHH
Confidence 46899999999999 76 477788888753 457899999999999764 57 4999999999986 5679999
Q ss_pred HHHHHHHHhhcCCCCcHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHH
Q 013299 372 ETILNAALDQTGKWEQGELLRTKAKVQLV----QGQLKGAVETYTHLLAAL 418 (446)
Q Consensus 372 ~~~~~~al~~~p~~~~~~~~~~~a~~~~~----~g~~~eA~~~~~~~l~l~ 418 (446)
+.+|+++.+. .++.+.+.+|.++.. ..++++|+..|+++.++-
T Consensus 79 ~~~~~~aa~~----g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 79 AQYYSKACGL----NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHhhhhcc----CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 9999999875 467889999999887 568999999999998753
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=94.80 E-value=1.6 Score=40.61 Aligned_cols=116 Identities=14% Similarity=-0.009 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHH
Q 013299 296 TRQAKALQALVSAARSTNMRDLSILYRLSLEYA----EQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDA 371 (446)
Q Consensus 296 ~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~----~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA 371 (446)
.+.+.|...+.... ...+-++..+........ ..+..+.|.........-..+. ......++.. ...+++..+
T Consensus 228 ~d~~~a~~~l~~~~-~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~w~~~~a-l~~~~~~~~ 304 (450)
T d1qsaa1 228 QDAENARLMIPSLA-QAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQST-SLIERRVRMA-LGTGDRRGL 304 (450)
T ss_dssp HCHHHHHHHHHHHH-HHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCH-HHHHHHHHHH-HHHTCHHHH
T ss_pred cChhHHHHHHHhhh-hcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccch-HHHHHHHHHH-HHcCChHHH
Confidence 45678888888888 777777665554444333 3466788888887776554443 3444445554 456899998
Q ss_pred HHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 013299 372 ETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLA 416 (446)
Q Consensus 372 ~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~ 416 (446)
..++...-. .|. ......|=+|..+...|+.++|...|..+..
T Consensus 305 ~~~~~~l~~-~~~-~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~ 347 (450)
T d1qsaa1 305 NTWLARLPM-EAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (450)
T ss_dssp HHHHHHSCT-TGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHhcCc-ccc-cHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence 888876532 221 3467778899999999999999999998764
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=93.79 E-value=2.6 Score=39.07 Aligned_cols=54 Identities=9% Similarity=-0.105 Sum_probs=42.2
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 013299 357 LMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHL 414 (446)
Q Consensus 357 ~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~ 414 (446)
..+..+...|+..+|...+..++...+ ..-...+|.+..+.|.++.|+....++
T Consensus 386 ~ra~~L~~~g~~~~A~~e~~~l~~~~~----~~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 386 ARVRELMYWNLDNTARSEWANLVKSKS----KTEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCC----HHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHcCCchHHHHHHHHHHhCCC----HHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 356778889999999998888875433 345667889999999999999877665
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=90.84 E-value=5.1 Score=35.56 Aligned_cols=74 Identities=9% Similarity=0.015 Sum_probs=34.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHH
Q 013299 159 WDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIAS 238 (446)
Q Consensus 159 ~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~ 238 (446)
++++.|..+..++....+..-|.- ....+.. +++-.......+...|.+++.+..++.++ ..++.++..+..++
T Consensus 67 ~~~~~~k~~~~~l~~~~e~~la~i-~~~~~~~---~~d~l~~~v~~ye~~~~~e~Li~~Le~~~--~~~~~~~~~~~~L~ 140 (336)
T d1b89a_ 67 NSTRTWKEVCFACVDGKEFRLAQM-CGLHIVV---HADELEELINYYQDRGYFEELITMLEAAL--GLERAHMGMFTELA 140 (336)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHH-TTTTTTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHT--TSTTCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCcHHHHHHH-HHHHhhc---CHHHHHHHHHHHHHcCChHHHHHHHHHHH--cCCccchHHHHHHH
Confidence 355555555555555544433311 1111222 22233334455555566666666666666 45555555444333
|
| >d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: 14-3-3 protein family: 14-3-3 protein domain: zeta isoform species: Cow (Bos taurus) [TaxId: 9913]
Probab=84.74 E-value=9.7 Score=31.65 Aligned_cols=174 Identities=15% Similarity=0.052 Sum_probs=88.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHH-HHHHHHH-CCChHHHHHHHHHHhcC-CCCCCChHHHHHHHHH
Q 013299 164 LDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHI-LALCYYG-AGEDLVALNLLRTLLSG-SEDPKCLPALLIASKI 240 (446)
Q Consensus 164 ~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~-lg~~~~~-~g~~~eA~~~~~~al~~-~~~P~~~~a~~~~~~~ 240 (446)
+..++.+..+.++|++.+.+..+++..+|.-..--.+ |..+|-. .|....+...+...... .-+++...... -
T Consensus 6 ~v~~Aklaeq~eRy~dm~~~mk~~~~~~~eLt~eERnLlsvayKn~i~~rR~s~R~l~~ie~k~~~~~~~~~~i~----~ 81 (230)
T d2o02a1 6 LVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRVVSSIEQKTEGAEKKQQMAR----E 81 (230)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CHHHHH----H
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHcCcchhhHHHH----H
Confidence 4567777888899999999999998888775543333 3333332 36666666666554410 11222222111 0
Q ss_pred HhcCCCCHHHHHHHHHHHHHHcC----CCcchhhhHHHH--HhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHh---
Q 013299 241 CGEYPDLAEEGATFASRALECLG----DGCDQMESTANC--LLGISLSAQSKVAITDFDRATRQAKALQALVSAARS--- 311 (446)
Q Consensus 241 ~~~~~~~~~eA~~~~~~al~~~~----~~~~~~~~~a~~--~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~--- 311 (446)
+. ..--+|=...++.++..+. |......+.+++ ..|..|....... ...++..-.++|..+|++|+ +
T Consensus 82 -yk-~kie~EL~~~C~dil~lid~~Lip~~~~~eskvFy~KmkgDy~RY~aE~~-~~~e~~~~~~~a~~aY~~A~-~~A~ 157 (230)
T d2o02a1 82 -YR-EKIETELRDICNDVLSLLEKFLIPNASQAESKVFYLKMKGDYYRYLAEVA-AGDDKKGIVDQSQQAYQEAF-EISK 157 (230)
T ss_dssp -HH-HHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred -HH-HHHHHHHHHHHcchHHHHHhhcCccCCCchhhhhHHHhcccHHHHHHHhc-CcHHHHHHHHHHHHHHHHHH-HHHH
Confidence 00 0011233334444444331 111111122222 3455555444332 11233444567777777766 4
Q ss_pred --hCCCCHHHH---HHHHHHHH-HcCCHHHHHHHHHHHHh
Q 013299 312 --TNMRDLSIL---YRLSLEYA-EQRKLNAAHYYAKMLLK 345 (446)
Q Consensus 312 --~~P~~~~a~---~~lg~~~~-~~~~~~~A~~~~~~al~ 345 (446)
+.|.||--+ .|.+..++ ..|+.++|+...++|+.
T Consensus 158 ~~L~~t~pirLgL~LN~SVF~YEi~~~~~~A~~lak~afd 197 (230)
T d2o02a1 158 KEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFD 197 (230)
T ss_dssp HHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred hcCCCCchHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467777433 34444444 46788888877777764
|
| >d1o9da_ a.118.7.1 (A:) 14-3-3-like protein C {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: 14-3-3 protein family: 14-3-3 protein domain: 14-3-3-like protein C species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=80.75 E-value=14 Score=30.69 Aligned_cols=179 Identities=12% Similarity=0.086 Sum_probs=88.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCC--CCC-cHHHHHHHHHHHHH-CCChHHHHHHHHHHhc---CCCCCCCh
Q 013299 159 WDPSILDHLSFAFSIAGDLSSLATQIEELLPG--IIN-RKERYHILALCYYG-AGEDLVALNLLRTLLS---GSEDPKCL 231 (446)
Q Consensus 159 ~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~--~p~-~~~~~~~lg~~~~~-~g~~~eA~~~~~~al~---~~~~P~~~ 231 (446)
..-+-+..++.+..+.++|++.+.+.+++++. +|. +.+-.+-|..+|-. .|....+...+..... ...+++..
T Consensus 2 ~~Re~lv~~AklaeqaeRy~dm~~~mk~v~~~~~~~~Ls~eERnLlsvayKn~i~~~R~s~r~l~~~e~k~~~~~~~~~~ 81 (236)
T d1o9da_ 2 TAREENVYMAKLAEQAERYEEMVEFMEKVSNSLGSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEEHV 81 (236)
T ss_dssp CHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHccCChHHH
Confidence 33445566777888889999999999999866 454 44555555555543 3555566655544331 01111111
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC----CcchhhhHHH--HHhhchhHhhhhhhhchHHHHHHHHHHHHHH
Q 013299 232 PALLIASKICGEYPDLAEEGATFASRALECLGD----GCDQMESTAN--CLLGISLSAQSKVAITDFDRATRQAKALQAL 305 (446)
Q Consensus 232 ~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~----~~~~~~~~a~--~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~ 305 (446)
... .-+.. .-.++=...++.+++.+.. ......+.++ -..|..|......... .++..-.++|...|
T Consensus 82 ~~i----~~yk~--kie~EL~~~C~~ii~lid~~Lip~~~~~eskvFy~KmkgDyyRYlaE~~~~-~e~~~~~~~a~~aY 154 (236)
T d1o9da_ 82 NSI----REYRS--KIENELSKICDGILKLLDAKLIPSAASGDSKVFYLKMKGDYHRYLAEFKTG-AERKEAAESTLTAY 154 (236)
T ss_dssp HHH----HHHHH--HHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCS-HHHHHHHHHHHHHH
T ss_pred HHH----HHHHH--HHHHHHHHHHHHHHHHHHHhccccCCCchhHHHHHHhhchHHHHHHHhcCc-hhHHHHHHHHHHHH
Confidence 110 00000 0112233334444443211 1011112222 2345555444433221 12334456677777
Q ss_pred HHHHHh-----hCCCCHHHH---HHHHHHHHH-cCCHHHHHHHHHHHHh
Q 013299 306 VSAARS-----TNMRDLSIL---YRLSLEYAE-QRKLNAAHYYAKMLLK 345 (446)
Q Consensus 306 ~~al~~-----~~P~~~~a~---~~lg~~~~~-~~~~~~A~~~~~~al~ 345 (446)
++|. . +.|.||--+ .|.+..+++ .|+.++|+...++|+.
T Consensus 155 ~~A~-~~a~~~l~pt~PirLgLaLN~SVF~yEi~~~~~~A~~lak~afd 202 (236)
T d1o9da_ 155 KAAQ-DIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 202 (236)
T ss_dssp HHHH-HHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHH-HHHHhcCCCCcHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7665 4 567777432 344555554 5777777777777654
|