Citrus Sinensis ID: 013307

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-----
MGSYNVLEPILKDILGMLNPLREDWETRMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIELSNGSCISSAGKKVKQSLLGDLLRALRQKGGYRRLQFVAHARVPILKFETIHQNISCDISIDNLCGQIKSKFLFWISQIDGRFRDMVLLVKEWAKAHDINNPKTGTFNSYSLSLLVLFHFQTCVPAILPPLKDIYPGNLVDDLKGVRANAERQIAEICAFNIARFSSDKYRKINRSSLAHLFVSFLEKFSGLSLKASELGICPFTGQWEHIRSNTRWLPNNHPLFIEDPFEQPENSARAVSEKNLAKISNAFEMTHFRLTSTNQTRYALLSSLARPFILQFFGESPVRYANYNNGHRRARPQSHKSVNSPLQAQHQSHNAKKENRPNRSMSQQSVQQHQSQPVRQINGQVQQIWRPKSDGSQQPSPANLEAEI
cccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccccEEEEEccccccccccccccccEEEEcccccccccHHHHHHHHHHHHHHHHHHccccEEEEEEccccEEEEEEEEccccEEEEEEEccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHcccccccccccEEEEcccccEEEcccccccccccccEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHcccccHHHHHccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
cccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEcccccccccccccEEEEEEccccccccHHHHcHHHHHHHHHHHHHHccccEEEEEccccEcEEEEEEcccccEEEEEEEccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHccccccccHHHccccccccccccccccHHHcHHccccccccccccccccccccccHHHHHHHHHHHHHHEccccccEEEEEEEccEEEccccccccccccEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHccccccccHHHHHcccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
mgsynvlePILKDILGMLNPLREDWETRMKVISDLREVVESVEslrgatvepfgSFVSNLFsrwgdldisielsngscissagKKVKQSLLGDLLRALRQKGGYRRLQFVAHARVPILKFETIHQNISCDISIDNLCGQIKSKFLFWISQIDGRFRDMVLLVKEWAKahdinnpktgtfnsYSLSLLVLFHFQtcvpailpplkdiypgnlvddlkGVRANAERQIAEICAFNiarfssdkyRKINRSSLAHLFVSFLEKFsglslkaselgicpftgqwehirsntrwlpnnhplfiedpfeqpensarAVSEKNLAKISNAFEMTHFRLTSTNQTRYALLSSLARPFILqffgespvryanynnghrrarpqshksvnsplqaqhqshnakkenrpnrsmsqQSVQQhqsqpvrqingqvqqiwrpksdgsqqpspanleaei
MGSYNVLEPILKDILGMLNPLREDWETRMKVISDLREVVESVeslrgatvepfgSFVSNLFSRWGDLDISIELSNGSCISSAGKKVKQSLLGDLLRALRQKGGYRRLQFVAHARVPILKFETIHQNISCDISIDNLCGQIKSKFLFWISQIDGRFRDMVLLVKEWAkahdinnpkTGTFNSYSLSLLVLFHFQTCVPAILPPLKDIYPGNLVDDLKGVRANAERQIAEICAFNIARFSSDKYRKINRSSLAHLFVSFLEKFSGLSLKASELGICPFTGQWEHIRSNTRWLPNNHPLFIEDPFEQPENSARAVSEKNLAKISNAFEMTHFRLTSTNQTRYALLSSLARPFILQFFGESPVRYANYNNGHRRARPQSHKSVNSPLQAQHQSHNAKKENRPNRSMSQQSVQQHQSQPVRQINGQVQQIwrpksdgsqqpspanleaei
MGSYNVLEPILKDILGMLNPLREDWETRMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIELSNGSCISSAGKKVKQSLLGDLLRALRQKGGYRRLQFVAHARVPILKFETIHQNISCDISIDNLCGQIKSKFLFWISQIDGRFRDMVLLVKEWAKAHDINNPKTGTFNSYSLSLLVLFHFQTCVPAILPPLKDIYPGNLVDDLKGVRANAERQIAEICAFNIARFSSDKYRKINRSSLAHLFVSFLEKFSGLSLKASELGICPFTGQWEHIRSNTRWLPNNHPLFIEDPFEQPENSARAVSEKNLAKISNAFEMTHFRLTSTNQTRYALLSSLARPFILQFFGESPVRYANYNNGHRRARPQSHKSVNSPLQAQHQSHNAKKENRPNRsmsqqsvqqhqsqPVRQINGQVQQIWRPKSDGSQQPSPANLEAEI
****NVLEPILKDILGMLNPLREDWETRMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIELSNGSCISSAGKKVKQSLLGDLLRALRQKGGYRRLQFVAHARVPILKFETIHQNISCDISIDNLCGQIKSKFLFWISQIDGRFRDMVLLVKEWAKAHDINNPKTGTFNSYSLSLLVLFHFQTCVPAILPPLKDIYPGNLVDDLKGVRANAERQIAEICAFNIARFSSDKYRKINRSSLAHLFVSFLEKFSGLSLKASELGICPFTGQWEHIRSNTRWLPNNHPLFIE******************AKISNAFEMTHFRLTSTNQTRYALLSSLARPFILQFFGESPVRYANY*********************************************************************************
*GSYNVLEPILKDILGMLNPLREDWETRMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIELSNGSCISSAGKKVKQSLLGDLLRALRQKGGYRRLQFVAHARVPILKFETIHQNISCDISIDNLCGQIKSKFLFWISQIDGRFRDMVLLVKEWAKAHDINNPKTGTFNSYSLSLLVLFHFQTCVPAILPPLKDIYPGNLVDDLKGVRANAERQIAEICAFNIARFSSDKY**INRSSLAHLFVSFLEKFSGLSLKASELGICPFTGQWEHIRSNTRWLPNNHPLFIEDPFEQPENSARAVSEKNLAKISNAFEMTHFRLTSTNQTRYALLSSLARPFILQFFG******************************************************************************************
MGSYNVLEPILKDILGMLNPLREDWETRMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIELSNGSCISSAGKKVKQSLLGDLLRALRQKGGYRRLQFVAHARVPILKFETIHQNISCDISIDNLCGQIKSKFLFWISQIDGRFRDMVLLVKEWAKAHDINNPKTGTFNSYSLSLLVLFHFQTCVPAILPPLKDIYPGNLVDDLKGVRANAERQIAEICAFNIARFSSDKYRKINRSSLAHLFVSFLEKFSGLSLKASELGICPFTGQWEHIRSNTRWLPNNHPLFIEDPFEQPENSARAVSEKNLAKISNAFEMTHFRLTSTNQTRYALLSSLARPFILQFFGESPVRYANYNNGH**************************************************NGQVQQIW*******************
*GSYNVLEPILKDILGMLNPLREDWETRMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIELSNGSCISSAGKKVKQSLLGDLLRALRQKGGYRRLQFVAHARVPILKFETIHQNISCDISIDNLCGQIKSKFLFWISQIDGRFRDMVLLVKEWAKAHDINNPKTGTFNSYSLSLLVLFHFQTCVPAILPPLKDIYPGNLVDDLKGVRANAERQIAEICAFNIARFSSDKYRKINRSSLAHLFVSFLEKFSGLSLKASELGICPFTGQWEHIRSNTRWLPNNHPLFIEDPFEQPENSARAVSEKNLAKISNAFEMTHFRLTSTNQTRYALLSSLARPFIL**********************************************************************************************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGSYNVLEPILKDILGMLNPLREDWETRMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIELSNGSCISSAGKKVKQSLLGDLLRALRQKGGYRRLQFVAHARVPILKFETIHQNISCDISIDNLCGQIKSKFLFWISQIDGRFRDMVLLVKEWAKAHDINNPKTGTFNSYSLSLLVLFHFQTCVPAILPPLKDIYPGNLVDDLKGVRANAERQIAEICAFNIARFSSDKYRKINRSSLAHLFVSFLEKFSGLSLKASELGICPFTGQWEHIRSNTRWLPNNHPLFIEDPFEQPENSARAVSEKNLAKISNAFEMTHFRLTSTNQTRYALLSSLARPFILQFFGESPVRYANYNNGHRRARPQSHKSVNSPLQAQHQSHNAKKENRPNRSMSQQSVQQHQSQPVRQINGQVQQIWRPKSDGSQQPSPANLEAEI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query445 2.2.26 [Sep-21-2011]
O74326478 Poly(A) RNA polymerase ci yes no 0.862 0.803 0.245 6e-21
Q9VD441364 Poly(A) RNA polymerase gl yes no 0.606 0.197 0.300 2e-20
Q91YI6484 Poly(A) RNA polymerase GL yes no 0.530 0.487 0.277 8e-19
Q5U315484 Poly(A) RNA polymerase GL yes no 0.530 0.487 0.273 3e-18
Q2HJ44484 Poly(A) RNA polymerase GL yes no 0.530 0.487 0.270 5e-18
Q6PIY7484 Poly(A) RNA polymerase GL yes no 0.530 0.487 0.270 2e-17
Q9VYS41373 Poly(A) RNA polymerase gl no no 0.213 0.069 0.469 7e-17
O13833405 Poly(A) RNA polymerase pr no no 0.561 0.617 0.267 1e-16
Q6DFA8509 Poly(A) RNA polymerase GL N/A no 0.579 0.506 0.272 1e-16
Q9NVV4582 Poly(A) RNA polymerase, m no no 0.557 0.426 0.261 2e-16
>sp|O74326|CID11_SCHPO Poly(A) RNA polymerase cid11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cid11 PE=3 SV=1 Back     alignment and function desciption
 Score =  102 bits (254), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 113/460 (24%), Positives = 183/460 (39%), Gaps = 76/460 (16%)

Query: 18  LNPLREDWETRMKVISDLREVVESVESLRGATVE--PFGSFVSNLFSRWGDLDISIELSN 75
           L P  E+   R + +  LR ++ +   ++ A ++   FGS  +NL  +  D+D+      
Sbjct: 58  LKPSNEEVSRRQQFVDKLRTILST--EIKDAKLDLFVFGSTENNLAIQQSDVDV------ 109

Query: 76  GSCISSAGKKVKQSLLGDLLRALRQKGGYRRLQFVAHARVPILKFETIHQNISCDISIDN 135
             CI + G K   S     L  L    G +++  V+ ARVPI+K      +I CD++I+N
Sbjct: 110 --CIITNGSKYLNSTCQ--LAQLLYSYGMKQIVCVSRARVPIVKIWDPQFDIHCDLNINN 165

Query: 136 LCGQIKSKFLFWISQIDGRFRDMVLLVKEWAKAHDINNPK-TGTFNSYSLSLLVLFHFQT 194
              +I +K L     ID R R + L++K WAK   + +   +GT  SY++S +++   QT
Sbjct: 166 DVAKINTKMLRLFVSIDPRVRPLGLIIKYWAKQRALCDAAGSGTITSYTISCMLVNFLQT 225

Query: 195 CVPAILPPLKDIYPGN----LVDDLKGVRANAERQIAEICAFNIARFSSDKYRKINRSSL 250
             P ILP + D+   +     VDD+ G +  A                      +N++SL
Sbjct: 226 RNPPILPAMLDLMSNDDNKMFVDDIVGFKEKA---------------------TLNKTSL 264

Query: 251 AHLFVSFLEKFSGLSLKASELGICPFTGQWEHIRSNTRWLPNNHPLFIEDPFEQPENSAR 310
             L + F   + G S    +  +   +G   + +     +  N+ L +E+PF    N A 
Sbjct: 265 GRLLIDFF-YYYGFSFNYLDSVVSVRSGTVLNKQEKGWAMEVNNSLCVEEPFNTARNLAN 323

Query: 311 AVSEKNLAKISNAFEMTHFRLTSTNQTRYALLSSLARPFILQFFGESPVRYANYNNGHRR 370
                ++  + + F+   FRL S N     L         L    E+   Y N N     
Sbjct: 324 TADNPSVKGLQSEFQRA-FRLMSENNACERLCKICEEYQFLDITNEA--NYGNTNTPFNT 380

Query: 371 AR----------------------PQSHKSVNS--------PLQAQHQSHNAKKENRPNR 400
           A                       PQ   S           P ++ HQS+   K NR + 
Sbjct: 381 AYESFGCNHTVLPEAAAYPKPYYPPQITLSDGGNMNFLYYIPDESNHQSY-ENKANRDSD 439

Query: 401 SMSQQSVQQHQSQPVRQINGQVQQIWRPKSDGSQQPSPAN 440
              Q S+ Q  + P   I  Q   +W P  D S  P+  N
Sbjct: 440 FQGQTSLTQGSAPPWHYIPCQSWLVWYPSEDAS-NPASGN 478

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 1EC: 9
>sp|Q9VD44|GLD2A_DROME Poly(A) RNA polymerase gld-2 homolog A OS=Drosophila melanogaster GN=Gld2 PE=1 SV=3 Back     alignment and function description
>sp|Q91YI6|GLD2_MOUSE Poly(A) RNA polymerase GLD2 OS=Mus musculus GN=Papd4 PE=1 SV=1 Back     alignment and function description
>sp|Q5U315|GLD2_RAT Poly(A) RNA polymerase GLD2 OS=Rattus norvegicus GN=Papd4 PE=2 SV=1 Back     alignment and function description
>sp|Q2HJ44|GLD2_BOVIN Poly(A) RNA polymerase GLD2 OS=Bos taurus GN=PAPD4 PE=2 SV=1 Back     alignment and function description
>sp|Q6PIY7|GLD2_HUMAN Poly(A) RNA polymerase GLD2 OS=Homo sapiens GN=PAPD4 PE=1 SV=1 Back     alignment and function description
>sp|Q9VYS4|GLD2B_DROME Poly(A) RNA polymerase gld-2 homolog B OS=Drosophila melanogaster GN=wisp PE=1 SV=1 Back     alignment and function description
>sp|O13833|CID1_SCHPO Poly(A) RNA polymerase protein cid1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cid1 PE=1 SV=2 Back     alignment and function description
>sp|Q6DFA8|GLD2B_XENLA Poly(A) RNA polymerase GLD2-B OS=Xenopus laevis GN=papd4-b PE=1 SV=1 Back     alignment and function description
>sp|Q9NVV4|PAPD1_HUMAN Poly(A) RNA polymerase, mitochondrial OS=Homo sapiens GN=MTPAP PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query445
255566462493 zinc finger protein, putative [Ricinus c 0.970 0.876 0.581 1e-156
359486610453 PREDICTED: poly(A) RNA polymerase GLD2-l 0.968 0.951 0.581 1e-147
449465848464 PREDICTED: poly(A) RNA polymerase GLD2-l 0.946 0.907 0.568 1e-138
356569346415 PREDICTED: poly(A) RNA polymerase cid11- 0.930 0.997 0.563 1e-135
356537950328 PREDICTED: poly(A) RNA polymerase GLD2-l 0.728 0.987 0.648 1e-126
79571331511 Nucleotidyltransferase family protein [A 0.905 0.788 0.556 1e-125
110735731511 hypothetical protein [Arabidopsis thalia 0.905 0.788 0.556 1e-125
297823863500 hypothetical protein ARALYDRAFT_321659 [ 0.905 0.806 0.542 1e-119
224112707300 predicted protein [Populus trichocarpa] 0.674 1.0 0.634 1e-111
2642156474 hypothetical protein [Arabidopsis thalia 0.822 0.772 0.504 1e-104
>gi|255566462|ref|XP_002524216.1| zinc finger protein, putative [Ricinus communis] gi|223536493|gb|EEF38140.1| zinc finger protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  556 bits (1433), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 284/488 (58%), Positives = 343/488 (70%), Gaps = 56/488 (11%)

Query: 1   MGSYNVLEPILKDILGMLNPLREDWETRMKVISDLREVVESVESLRGATVEPFGSFVSNL 60
           M +++VLEPIL+D L ++ PLREDW  R K+I +L++V+ S+ESLRGATVEPFGSFVSNL
Sbjct: 1   MNAHSVLEPILRDTLEVIKPLREDWAVRSKIIEELKDVIASIESLRGATVEPFGSFVSNL 60

Query: 61  FSRWGDLDISIELSNGSCISSAGKKVKQSLLGDLLRALRQKGGYRRLQFVAHARVPILKF 120
           F+RWGDLDISI L+NGS ISSA KK KQ++L +  +ALRQKGG+RRLQFV +ARVP+LKF
Sbjct: 61  FTRWGDLDISIMLANGSYISSAAKKRKQNVLREFHKALRQKGGWRRLQFVPNARVPLLKF 120

Query: 121 ETIHQNISCDISIDNLCGQIKSKFLFWISQIDGRFRDMVLLVKEWAKAHDINNPKTGTFN 180
           E+  QNISCD+SIDNL GQIKS FLFW++QIDGRFRDMVLLVKEWAKAH+INNPKTGT N
Sbjct: 121 ESGRQNISCDVSIDNLQGQIKSNFLFWLNQIDGRFRDMVLLVKEWAKAHNINNPKTGTLN 180

Query: 181 SYSLSLLVLFHFQTCVPAILPPLKDIYPGNLVDDLKGVRANAERQIAEICAFNIARFSSD 240
           SYSLSLLV+FHFQTCVPAILPPLK+IYP N+VDDL GVR  AE +I E C  NIAR+ SD
Sbjct: 181 SYSLSLLVIFHFQTCVPAILPPLKEIYPRNVVDDLTGVRTVAEERIKETCNANIARYMSD 240

Query: 241 KYRKINRSSLAHLFVSFLEKFSGLSLKASELGICPFTGQWEHIRSNTRWLPNNHPLFIED 300
           KYR +NRSSL+ LF+SF  KFSG+SLKA++LGIC FTGQW  IRS  RWLP  + LFIED
Sbjct: 241 KYRAVNRSSLSELFISFFAKFSGISLKAADLGICTFTGQWLDIRSTMRWLPKTYALFIED 300

Query: 301 PFEQPENSARAVSEKNLAKISNAFEMTHFRLTSTNQTRYALLSSLARPFILQFFGESPVR 360
           PFEQPEN+ARAVS  NL KI+ AF+ T+ +L   NQ R +LL +L RP IL     +PVR
Sbjct: 301 PFEQPENAARAVSAGNLVKIAEAFQTTYHKLVLANQNRTSLLGTLVRPEILNCIAGTPVR 360

Query: 361 YANYNNGHRRA-RPQSHKSVNSPLQAQHQSHNA------------KKENRPNRSMSQQSV 407
             +Y + H ++  PQ  KS+ S  Q QHQ  N             ++E  P+ S SQ  V
Sbjct: 361 NLSYTSLHYQSTHPQISKSMYSSPQVQHQFQNMRQEKHQKIFTAQRQEKHPHSSNSQYRV 420

Query: 408 QQ--------------HQS-----------------------------QPVRQINGQVQQ 424
           Q               H+S                             +P +  +GQ QQ
Sbjct: 421 QNTRLEKHPSYLAKQGHESHPENTRLERHPNYFAMQKQESNVNTSTRKKPAQYYHGQGQQ 480

Query: 425 IWRPKSDG 432
           +WRPKSDG
Sbjct: 481 LWRPKSDG 488

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359486610|ref|XP_002277771.2| PREDICTED: poly(A) RNA polymerase GLD2-like [Vitis vinifera] gi|296086183|emb|CBI31624.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449465848|ref|XP_004150639.1| PREDICTED: poly(A) RNA polymerase GLD2-like [Cucumis sativus] gi|449516431|ref|XP_004165250.1| PREDICTED: poly(A) RNA polymerase GLD2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356569346|ref|XP_003552863.1| PREDICTED: poly(A) RNA polymerase cid11-like [Glycine max] Back     alignment and taxonomy information
>gi|356537950|ref|XP_003537469.1| PREDICTED: poly(A) RNA polymerase GLD2-like [Glycine max] Back     alignment and taxonomy information
>gi|79571331|ref|NP_181504.2| Nucleotidyltransferase family protein [Arabidopsis thaliana] gi|53850481|gb|AAU95417.1| At2g39740 [Arabidopsis thaliana] gi|55733735|gb|AAV59264.1| At2g39740 [Arabidopsis thaliana] gi|330254623|gb|AEC09717.1| Nucleotidyltransferase family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|110735731|dbj|BAE99845.1| hypothetical protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297823863|ref|XP_002879814.1| hypothetical protein ARALYDRAFT_321659 [Arabidopsis lyrata subsp. lyrata] gi|297325653|gb|EFH56073.1| hypothetical protein ARALYDRAFT_321659 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|224112707|ref|XP_002316267.1| predicted protein [Populus trichocarpa] gi|222865307|gb|EEF02438.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|2642156|gb|AAB87123.1| hypothetical protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query445
TAIR|locus:2063937511 HESO1 "HEN1 suppressor 1" [Ara 0.876 0.763 0.578 5.2e-119
TAIR|locus:2102709 682 AT3G45750 "AT3G45750" [Arabido 0.579 0.378 0.315 1.7e-30
TAIR|locus:2102714474 AT3G45760 [Arabidopsis thalian 0.451 0.424 0.351 1.1e-28
DICTYBASE|DDB_G02784251090 DDB_G0278425 [Dictyostelium di 0.678 0.277 0.279 5.7e-20
POMBASE|SPBC1685.06478 cid11 "poly(A) polymerase Cid1 0.433 0.403 0.306 5.9e-19
FB|FBgn00389341364 Gld2 [Drosophila melanogaster 0.701 0.228 0.290 1.9e-17
MGI|MGI:2140950484 Papd4 "PAP associated domain c 0.548 0.504 0.285 5.2e-17
UNIPROTKB|Q2HJ44484 PAPD4 "Poly(A) RNA polymerase 0.584 0.537 0.282 8.8e-17
RGD|1306438484 Papd4 "PAP associated domain c 0.548 0.504 0.281 1.5e-16
UNIPROTKB|Q6PIY7484 PAPD4 "Poly(A) RNA polymerase 0.584 0.537 0.282 2.5e-16
TAIR|locus:2063937 HESO1 "HEN1 suppressor 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1137 (405.3 bits), Expect = 5.2e-119, Sum P(2) = 5.2e-119
 Identities = 228/394 (57%), Positives = 288/394 (73%)

Query:     7 LEPILKDILGMLNPLREDWETRMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGD 66
             L+P L++IL ++ P R D +TR+ VI  LR+V++SVE LRGATV+PFGSFVSNLF+RWGD
Sbjct:     7 LDPTLQEILQVIKPTRADRDTRITVIDQLRDVLQSVECLRGATVQPFGSFVSNLFTRWGD 66

Query:    67 LDISIELSNGSCISSAGKKVKQSLLGDLLRALRQKGGYRRLQFVAHARVPILKFETIHQN 126
             LDIS++L +GS I   GKK KQ+LLG LLRALR  G + +LQFV HARVPILK  + HQ 
Sbjct:    67 LDISVDLFSGSSILFTGKKQKQTLLGHLLRALRASGLWYKLQFVIHARVPILKVVSGHQR 126

Query:   127 ISCDISIDNLCGQIKSKFLFWISQIDGRFRDMVLLVKEWAKAHDINNPKTGTFNSYSLSL 186
             ISCDISIDNL G +KS+FLFWIS+IDGRFRD+VLLVKEWAKAH+IN+ KTGTFNSYSLSL
Sbjct:   127 ISCDISIDNLDGLLKSRFLFWISEIDGRFRDLVLLVKEWAKAHNINDSKTGTFNSYSLSL 186

Query:   187 LVLFHFQTCVPAILPPLKDIYPGNLVDDLKGVRANAERQIAEICAFNIARFSSDKYRKIN 246
             LV+FHFQTCVPAILPPL+ IYP + VDDL GVR  AE  IA++ A NIARF S++ + +N
Sbjct:   187 LVIFHFQTCVPAILPPLRVIYPKSAVDDLTGVRKTAEESIAQVTAANIARFKSERAKSVN 246

Query:   247 RSSLAHLFVSFLEKFSGLSLKASELGICPFTGQWEHIRSNTRWLPNNHPLFIEDPFEQPE 306
             RSSL+ L VSF  KFS +++KA E G+CPFTG+WE I SNT WLP  + LF+EDPFEQP 
Sbjct:   247 RSSLSELLVSFFAKFSDINVKAQEFGVCPFTGRWETISSNTTWLPKTYSLFVEDPFEQPV 306

Query:   307 NSARAVSEKNLAKISNAFEMTHFRLTSTNQTRYALLSSLARPFILQ-FFGESPVRYANYN 365
             N+AR+VS +NL +I+  F++T  RL S    R +++  L    I +  +    +   ++ 
Sbjct:   307 NAARSVSRRNLDRIAQVFQITSRRLVS-ECNRNSIIGILTGQHIQESLYRTISLPSQHHA 365

Query:   366 NGHRRARPQSHKSVNSPLQAQHQSHNAKKENRPN 399
             NG    R   H     P   Q Q + ++  N PN
Sbjct:   366 NGMHNVR-NLHGQAR-PQNQQMQQNWSQSYNTPN 397
GO:0005737 "cytoplasm" evidence=ISM;IDA
GO:0005634 "nucleus" evidence=IDA
GO:0016779 "nucleotidyltransferase activity" evidence=IDA
GO:0071076 "RNA 3' uridylation" evidence=IMP
TAIR|locus:2102709 AT3G45750 "AT3G45750" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2102714 AT3G45760 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0278425 DDB_G0278425 [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
POMBASE|SPBC1685.06 cid11 "poly(A) polymerase Cid11 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
FB|FBgn0038934 Gld2 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
MGI|MGI:2140950 Papd4 "PAP associated domain containing 4" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q2HJ44 PAPD4 "Poly(A) RNA polymerase GLD2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1306438 Papd4 "PAP associated domain containing 4" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q6PIY7 PAPD4 "Poly(A) RNA polymerase GLD2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.7.7LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00018421001
SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (456 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query445
cd05402114 cd05402, NT_PAP_TUTase, Nucleotidyltransferase (NT 2e-25
COG5260482 COG5260, TRF4, DNA polymerase sigma [DNA replicati 3e-24
>gnl|CDD|143392 cd05402, NT_PAP_TUTase, Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases Back     alignment and domain information 
 Score = 99.6 bits (249), Expect = 2e-25
 Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 9/122 (7%)

Query: 28  RMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIELSNGSCISSAGKKVK 87
           R +V+  L+E+++      GA + PFGS+V+ L     D+D+ +   N        +  +
Sbjct: 2   REEVLDRLQELIKEWFP--GAKLYPFGSYVTGLGLPGSDIDLCLLGPNH-------RVDR 52

Query: 88  QSLLGDLLRALRQKGGYRRLQFVAHARVPILKFETIHQNISCDISIDNLCGQIKSKFLFW 147
           +  L  L + L++ G    ++ + +ARVPI+KF      I  DIS +NL G   +K L  
Sbjct: 53  EDFLRKLAKLLKKSGEVVEVEPIINARVPIIKFVDKPTGIEVDISFNNLNGIRNTKLLRA 112

Query: 148 IS 149
             
Sbjct: 113 YV 114

Poly(A) polymerases (PAPs) catalyze mRNA poly(A) tail synthesis, and terminal uridylyl transferases (TUTases) uridylate RNA. PAPs in this subgroup include human PAP alpha, mouse testis-specific cytoplasmic PAP beta, human nuclear PAP gamma, Saccharomyces cerevisiae PAP1, TRF4 and-5, Schizosaccharomyces pombe caffeine-induced death proteins -1, and -14, Caenorhabditis elegans Germ Line Development-2, and Chlamydomonas reinhardtii MUT68. This family also includes human U6 snRNA-specific TUTase1, and Trypanosoma brucei 3'-TUTase-1,-2, and 4. This family belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, coordinate two divalent metal cations involved in a two-metal ion mechanism of nucleotide addition. For the majority of proteins in this family, these carboxylate residues are conserved. Length = 114
>gnl|CDD|227585 COG5260, TRF4, DNA polymerase sigma [DNA replication, recombination, and repair] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 445
COG5260482 TRF4 DNA polymerase sigma [DNA replication, recomb 100.0
KOG1906514 consensus DNA polymerase sigma [Replication, recom 100.0
PTZ00418593 Poly(A) polymerase; Provisional 100.0
KOG2245 562 consensus Poly(A) polymerase and related nucleotid 99.97
KOG2277596 consensus S-M checkpoint control protein CID1 and 99.97
COG5186552 PAP1 Poly(A) polymerase [RNA processing and modifi 99.91
PF04928254 PAP_central: Poly(A) polymerase central domain; In 99.89
cd05402114 NT_PAP_TUTase Nucleotidyltransferase (NT) domain o 99.89
TIGR03671408 cca_archaeal CCA-adding enzyme. 99.78
PRK13300447 tRNA CCA-pyrophosphorylase; Provisional 99.78
COG1746443 CCA1 tRNA nucleotidyltransferase (CCA-adding enzym 99.69
PF0382860 PAP_assoc: Cid1 family poly A polymerase; InterPro 99.03
PF03813 972 Nrap: Nrap protein; InterPro: IPR005554 Members of 98.87
PF09249114 tRNA_NucTransf2: tRNA nucleotidyltransferase, seco 98.45
smart00572246 DZF domain in DSRM or ZnF_C2H2 domain containing p 98.25
cd0539749 NT_Pol-beta-like Nucleotidyltransferase (NT) domai 98.03
cd05400143 NT_2-5OAS_ClassI-CCAase Nucleotidyltransferase (NT 98.0
PF0190993 NTP_transf_2: Nucleotidyltransferase domain A subs 97.88
KOG2054 1121 consensus Nucleolar RNA-associated protein (NRAP) 97.71
PF10421190 OAS1_C: 2'-5'-oligoadenylate synthetase 1, domain 97.47
cd0540393 NT_KNTase_like Nucleotidyltransferase (NT) domain 97.45
COG166997 Predicted nucleotidyltransferases [General functio 96.97
PF07528248 DZF: DZF domain; InterPro: IPR006561 This domain i 96.79
PF03813972 Nrap: Nrap protein; InterPro: IPR005554 Members of 96.46
COG1708128 Predicted nucleotidyltransferases [General functio 96.35
PF14091152 DUF4269: Domain of unknown function (DUF4269) 95.87
PRK13746262 aminoglycoside resistance protein; Provisional 95.87
KOG20541121 consensus Nucleolar RNA-associated protein (NRAP) 94.35
PF14792112 DNA_pol_B_palm: DNA polymerase beta palm ; PDB: 1R 92.93
KOG3793362 consensus Transcription factor NFAT, subunit NF45 92.38
PRK02098221 phosphoribosyl-dephospho-CoA transferase; Provisio 92.37
TIGR03135202 malonate_mdcG holo-ACP synthase, malonate decarbox 91.59
cd00141307 NT_POLXc Nucleotidyltransferase (NT) domain of fam 91.39
cd05401172 NT_GlnE_GlnD_like Nucleotidyltransferase (NT) doma 82.86
PF10620213 MdcG: Phosphoribosyl-dephospho-CoA transferase Mdc 80.04
>COG5260 TRF4 DNA polymerase sigma [DNA replication, recombination, and repair] Back     alignment and domain information 
Probab=100.00  E-value=9.5e-46  Score=373.29  Aligned_cols=287  Identities=25%  Similarity=0.363  Sum_probs=240.5

Q ss_pred             ccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhcCCCcEEEEecccccCCCCCCCCcceEEeecCCCcccccc
Q 013307            4 YNVLEPILKDILGMLNPLREDWETRMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIELSNGSCISSAG   83 (445)
Q Consensus         4 ~~~L~~ei~~f~~~~~Pt~ee~~~R~~vi~~l~~il~~~~~~~~~~v~~fGS~~tGl~l~~SDIDl~i~~~~~~~iss~~   83 (445)
                      .+.|+.+|.+|+.++.|+.+|.+.|.++++.|+.++++.  +|++.+.+|||+.+|++++.|||||||.+++..+     
T Consensus        54 ~~~lt~el~~~y~~I~ps~eEl~~R~~~leklr~~lk~~--~pda~l~vFGS~~t~L~l~~SDiDl~I~s~~~~~-----  126 (482)
T COG5260          54 SDELTSELLEFYDYIAPSDEELKRRKALLEKLRTLLKKE--FPDADLKVFGSTETGLALPKSDIDLCIISDPRGY-----  126 (482)
T ss_pred             HHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHh--CCccceeEecccccccccCcccccEEEecCCccc-----
Confidence            357999999999999999999999999999999999998  7999999999999999999999999998865321     


Q ss_pred             hhhHHHHHHHHHHHHHhcCCceEEEEecccccceEEEEeeccceEEEEeecccccccccHHHhHHhcccchhHHHHHHHH
Q 013307           84 KKVKQSLLGDLLRALRQKGGYRRLQFVAHARVPILKFETIHQNISCDISIDNLCGQIKSKFLFWISQIDGRFRDMVLLVK  163 (445)
Q Consensus        84 k~~~~~~L~~l~~~L~~~~~~~~v~~I~~ArVPIIk~~~~~~gi~~DIs~~n~~g~~~s~ll~~~~~~~~~~r~Lv~~iK  163 (445)
                      +..+ ... .++..+.....+.+++++.+||||||||.++.+|+.|||+|++..|+.++.+++.|.+.+|++|+|+++||
T Consensus       127 ~et~-~~~-~l~~~l~~~~~~~~~~~v~tarVPIIKl~d~~s~l~~Disfn~~~~~~~akl~~~~~~~~P~lrpLvliIK  204 (482)
T COG5260         127 KETR-NAG-SLASHLFKKNLAKEVVVVSTARVPIIKLVDPQSGLHCDISFNNTNGIVNAKLIRSYLKEDPRLRPLVLIIK  204 (482)
T ss_pred             cccc-cHH-HHHHHHHHhccCeeeEEEEecccceEEEecCccceEEEeecCchhHHHHHHHHHHHHhcCcccchHHHHHH
Confidence            2122 222 45555656677889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHCCCCCCCCCCCcchHHHHHHHHHhhhcCCCCCCCccccCCCCCCCcccccchhhhhHHHHHhhcccccccccccc
Q 013307          164 EWAKAHDINNPKTGTFNSYSLSLLVLFHFQTCVPAILPPLKDIYPGNLVDDLKGVRANAERQIAEICAFNIARFSSDKYR  243 (445)
Q Consensus       164 ~Wak~rgL~~~~~G~Lssy~l~lMvi~fLQ~~~p~ilP~Lq~l~~~~~~~~~~~~~~~~e~~~~e~~~~n~~~~~~~~~~  243 (445)
                      +||+.|.|++++.|||+||++++||+.|||++.|.  +.+    +......                          ...
T Consensus       205 hwl~~R~ln~~~~GtL~sy~i~cmV~sfLq~~~~~--~~~----~~~~~~~--------------------------l~~  252 (482)
T COG5260         205 HWLKRRALNDVATGTLSSYTISCMVLSFLQMHPPF--LFF----DNGLLSP--------------------------LKY  252 (482)
T ss_pred             HHHHHHhhcccccCcchhhhhHHHHHHHHHhCCcc--ccc----cccccch--------------------------hhc
Confidence            99999999999999999999999999999999431  111    1110000                          001


Q ss_pred             cCCCCCHHHHHHHHHHhhccCCCCcccceeeccCC-ceeeecccCCCCC-C-CCCeEEecCC-CCCCCccccCCHHHHHH
Q 013307          244 KINRSSLAHLFVSFLEKFSGLSLKASELGICPFTG-QWEHIRSNTRWLP-N-NHPLFIEDPF-EQPENSARAVSEKNLAK  319 (445)
Q Consensus       244 ~~n~~sl~~LL~~FF~~Ys~~df~~~~~~Is~~~g-~~~~~~~~~~~~~-~-~~~L~I~DPf-~~~~Nvar~vs~~~~~~  319 (445)
                      ..|..++|.||.+||+||+ ..|+|..+++++..| .+.++. .++|.. - ...|+||||+ ++++++++.  .+++..
T Consensus       253 ~~~~~~lgvLf~dFf~~yG-~~f~Y~~~~~si~~g~~~~~K~-e~g~~~~~~p~~LsiqdP~td~n~~~~a~--s~~ik~  328 (482)
T COG5260         253 NKNIDNLGVLFDDFFELYG-KSFNYSLVVLSINSGDFYLPKY-EKGWLKPSKPNSLSIQDPGTDRNNDISAV--SFNIKD  328 (482)
T ss_pred             cccccccchHHHHHHHHhc-cccChhheEEEecCCceeeehh-hcccccccCCCcEeecCCCCCcccccccc--cchHHH
Confidence            3456789999999999998 799999999999998 344433 366743 2 2689999999 888888875  678999


Q ss_pred             HHHHHHHHHHHhhccC
Q 013307          320 ISNAFEMTHFRLTSTN  335 (445)
Q Consensus       320 I~~~f~~A~~~L~~~~  335 (445)
                      ++.+|.+|.++|.+..
T Consensus       329 i~~~F~~aF~lls~~~  344 (482)
T COG5260         329 IKAAFIRAFELLSNKL  344 (482)
T ss_pred             HHHHHHHHHHHHhhhc
Confidence            9999999999999865

>KOG1906 consensus DNA polymerase sigma [Replication, recombination and repair] Back     alignment and domain information
>PTZ00418 Poly(A) polymerase; Provisional Back     alignment and domain information
>KOG2245 consensus Poly(A) polymerase and related nucleotidyltransferases [RNA processing and modification] Back     alignment and domain information
>KOG2277 consensus S-M checkpoint control protein CID1 and related nucleotidyltransferases [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG5186 PAP1 Poly(A) polymerase [RNA processing and modification] Back     alignment and domain information
>PF04928 PAP_central: Poly(A) polymerase central domain; InterPro: IPR007012 In eukaryotes, polyadenylation of pre-mRNA plays an essential role in the initiation step of protein synthesis, as well as in the export and stability of mRNAs Back     alignment and domain information
>cd05402 NT_PAP_TUTase Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases Back     alignment and domain information
>TIGR03671 cca_archaeal CCA-adding enzyme Back     alignment and domain information
>PRK13300 tRNA CCA-pyrophosphorylase; Provisional Back     alignment and domain information
>COG1746 CCA1 tRNA nucleotidyltransferase (CCA-adding enzyme) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF03828 PAP_assoc: Cid1 family poly A polymerase; InterPro: IPR002058 These PAP/25A associated domains are found in uncharacterised eukaryotic proteins, a number of which are described as 'topoisomerase 1-related' though they appear to have little or no homology to topoisomerase 1 Back     alignment and domain information
>PF03813 Nrap: Nrap protein; InterPro: IPR005554 Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human Back     alignment and domain information
>PF09249 tRNA_NucTransf2: tRNA nucleotidyltransferase, second domain; InterPro: IPR015329 This domain adopts a structure consisting of a five helical bundle core Back     alignment and domain information
>smart00572 DZF domain in DSRM or ZnF_C2H2 domain containing proteins Back     alignment and domain information
>cd05397 NT_Pol-beta-like Nucleotidyltransferase (NT) domain of DNA polymerase beta and similar proteins Back     alignment and domain information
>cd05400 NT_2-5OAS_ClassI-CCAase Nucleotidyltransferase (NT) domain of 2'5'-oligoadenylate (2-5A)synthetase (2-5OAS) and class I CCA-adding enzyme Back     alignment and domain information
>PF01909 NTP_transf_2: Nucleotidyltransferase domain A subset of this Pfam family; InterPro: IPR002934 A small region that overlaps with a nuclear localization signal and binds to the RNA primer contains three aspartates that are essential for catalysis Back     alignment and domain information
>KOG2054 consensus Nucleolar RNA-associated protein (NRAP) [Function unknown] Back     alignment and domain information
>PF10421 OAS1_C: 2'-5'-oligoadenylate synthetase 1, domain 2, C-terminus ; InterPro: IPR018952 This is the largely alpha-helical, C-terminal half of 2'-5'-oligoadenylate synthetase 1, being described as domain 2 of the enzyme and homologous to a tandem ubiquitin repeat Back     alignment and domain information
>cd05403 NT_KNTase_like Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins Back     alignment and domain information
>COG1669 Predicted nucleotidyltransferases [General function prediction only] Back     alignment and domain information
>PF07528 DZF: DZF domain; InterPro: IPR006561 This domain is found in proteins containing the double-stranded RNA-binding motif, DSRM (IPR001159 from INTERPRO), or the zinc finger domain C2H2 (IPR007087 from INTERPRO) Back     alignment and domain information
>PF03813 Nrap: Nrap protein; InterPro: IPR005554 Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human Back     alignment and domain information
>COG1708 Predicted nucleotidyltransferases [General function prediction only] Back     alignment and domain information
>PF14091 DUF4269: Domain of unknown function (DUF4269) Back     alignment and domain information
>PRK13746 aminoglycoside resistance protein; Provisional Back     alignment and domain information
>KOG2054 consensus Nucleolar RNA-associated protein (NRAP) [Function unknown] Back     alignment and domain information
>PF14792 DNA_pol_B_palm: DNA polymerase beta palm ; PDB: 1RZT_A 3PML_A 2PFN_A 3HX0_K 3HWT_A 2GWS_E 2BCQ_A 3UPQ_A 2BCS_A 3UQ2_A Back     alignment and domain information
>KOG3793 consensus Transcription factor NFAT, subunit NF45 [Transcription] Back     alignment and domain information
>PRK02098 phosphoribosyl-dephospho-CoA transferase; Provisional Back     alignment and domain information
>TIGR03135 malonate_mdcG holo-ACP synthase, malonate decarboxylase-specific Back     alignment and domain information
>cd00141 NT_POLXc Nucleotidyltransferase (NT) domain of family X DNA Polymerases Back     alignment and domain information
>cd05401 NT_GlnE_GlnD_like Nucleotidyltransferase (NT) domain of Escherichia coli adenylyltransferase (GlnE), Escherichia coli uridylyl transferase (GlnD), and similar proteins Back     alignment and domain information
>PF10620 MdcG: Phosphoribosyl-dephospho-CoA transferase MdcG; InterPro: IPR017557 Malonate decarboxylase, like citrate lyase, has a unique acyl carrier protein subunit with a prosthetic group derived from, and distinct from, coenzyme A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query445
4e7x_A405 Structural Basis For The Activity Of A Cytoplasmic 7e-18
4ep7_A340 Functional Implications From The Cid1 Poly(U) Polym 9e-18
4fh3_A349 Crystal Structures Of The Cid1 Poly (U) Polymerase 9e-18
4fhx_A349 Crystal Structures Of The Cid1 Poly (U) Polymerase 1e-17
3nyb_A323 Structure And Function Of The Polymerase Core Of Tr 6e-15
3hj1_A387 Minor Editosome-Associated Tutase 1 With Bound Utp 5e-12
3hiy_B384 Minor Editosome-Associated Tutase 1 With Bound Utp 3e-11
3pq1_A464 Crystal Structure Of Human Mitochondrial Poly(A) Po 5e-09
>pdb|4E7X|A Chain A, Structural Basis For The Activity Of A Cytoplasmic Rna Terminal U- Transferase Length = 405 Back     alignment and structure 
Iteration: 1

 Score = 88.6 bits (218), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 125/299 (41%), Gaps = 49/299 (16%)
Query: 48  ATVEPFGSFVSNLFSRWGDLDISIELSNGSCISSAGKKVKQSLLGDLLRALRQKGGYRRL 107
           A +  FGS  S L  +  D+D+ + + +     +   +  + L+ +              
Sbjct: 83  AELVAFGSLESGLALKNSDMDLCVLMDSRVQSDTIALQFYEELIAEGFEG---------- 132
Query: 108 QFVAHARVPILKFETIHQN-----ISCDISIDNLCGQIKSKFLFWISQIDGRFRDMVLLV 162
           +F+  AR+PI+K  +  +N       CDI  +N      +  L   +++D R + MVLLV
Sbjct: 133 KFLQRARIPIIKLTSDTKNGFGASFQCDIGFNNRLAIHNTLLLSSYTKLDARLKPMVLLV 192
Query: 163 KEWAKAHDINNPKTGTFNSYSLSLLVLFHFQTCVPAILPPLKDIYPGNLVDDLKGVRANA 222
           K WAK   IN+P  GT +SY   L+VL++    +  I PP   ++P  L+  LK      
Sbjct: 193 KHWAKRKQINSPYFGTLSSYGYVLMVLYYL---IHVIKPP---VFPNLLLSPLK------ 240
Query: 223 ERQIAEICAFNIARFSSDKYRKI----NRSSLAHLFVSFLEKFSGLSLKASELGIC---- 274
             Q   +  F++     DK   I    N SSL  L   F  +F     +  E  +     
Sbjct: 241 --QEKIVDGFDVG--FDDKLEDIPPSQNYSSLGSLLHGFF-RFYAYKFEPREKVVTFRRP 295
Query: 275 ---------PFTGQWEHIRSNTRWLPNNHPLFIEDPFEQPENSARAVSEKNLAKISNAF 324
                     +T   EH  S  + + + + L IEDPFE   N  R VS   L +I   F
Sbjct: 296 DGYLTKQEKGWTSATEHTGSADQIIKDRYILAIEDPFEISHNVGRTVSSSGLYRIRGEF 354
>pdb|4EP7|A Chain A, Functional Implications From The Cid1 Poly(U) Polymerase Crystal Structure Length = 340 Back     alignment and structure
>pdb|4FH3|A Chain A, Crystal Structures Of The Cid1 Poly (U) Polymerase Reveal The Mechanism For Utp Selectivity Length = 349 Back     alignment and structure
>pdb|4FHX|A Chain A, Crystal Structures Of The Cid1 Poly (U) Polymerase Reveal The Mechanism For Utp Selectivity - H336n Mutant Bound To Mgatp Length = 349 Back     alignment and structure
>pdb|3NYB|A Chain A, Structure And Function Of The Polymerase Core Of Tramp, A Rna Surveillance Complex Length = 323 Back     alignment and structure
>pdb|3HJ1|A Chain A, Minor Editosome-Associated Tutase 1 With Bound Utp Length = 387 Back     alignment and structure
>pdb|3HIY|B Chain B, Minor Editosome-Associated Tutase 1 With Bound Utp And Mg Length = 384 Back     alignment and structure
>pdb|3PQ1|A Chain A, Crystal Structure Of Human Mitochondrial Poly(A) Polymerase (Papd1) Length = 464 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query445
4ep7_A340 Poly(A) RNA polymerase protein CID1; poly(U) polym 1e-51
4e8f_A405 Poly(A) RNA polymerase protein CID1; beta polymera 1e-51
3hj4_A384 Minor editosome-associated tutase; nucleotidyltran 6e-48
3pq1_A464 Poly(A) RNA polymerase; nucleotidyl transferase, R 5e-47
2ikf_A353 RNA uridylyl transferase; tutase, nucleotidyltrans 2e-44
2b4v_A468 RNA editing complex protein MP57; tbret2, TBMP57, 8e-44
3nyb_A323 Poly(A) RNA polymerase protein 2; polya RNA polyme 2e-43
2hhp_A530 Poly(A) polymerase; template-independent RNA polym 3e-18
1q79_A514 Poly(A) polymerase alpha; mRNA processing, nucleot 3e-17
1r89_A437 TRNA nucleotidyltransferase; CCA adding enzyme, in 1e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-05
>4ep7_A Poly(A) RNA polymerase protein CID1; poly(U) polymerase, UTP binding, transferase; HET: UTP; 2.28A {Schizosaccharomyces pombe} Length = 340 Back     alignment and structure
 Score =  176 bits (447), Expect = 1e-51
 Identities = 75/347 (21%), Positives = 133/347 (38%), Gaps = 43/347 (12%)

Query: 7   LEPILKDILGMLNPLREDWETRMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGD 66
                 ++   +    ++++ +   +  LR  ++ +     A +  FGS  S L  +  D
Sbjct: 7   FTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRI--SPDAELVAFGSLESGLALKNSD 64

Query: 67  LDISIELSNGSCISSAGKKVKQSLLGDLLRALRQKGGYRRLQFVAHARVPILKFETIHQN 126
           +D+ + + +     +   +  + L+ +              +F+  AR+PI+K  +  +N
Sbjct: 65  MDLCVLMDSRVQSDTIALQFYEELIAEGFEG----------KFLQRARIPIIKLTSDTKN 114

Query: 127 -----ISCDISIDNLCGQIKSKFLFWISQIDGRFRDMVLLVKEWAKAHDINNPKTGTFNS 181
                  CDI  +N      +  L   +++D R + MVLLVK WAK   IN+P  GT +S
Sbjct: 115 GFGASFQCDIGFNNRLAIHNTLLLSSYTKLDARLKPMVLLVKHWAKRKQINSPYFGTLSS 174

Query: 182 YSLSLLVLFHFQ-TCVPAILPPLKDIYPGNLVDDLKGVRANAERQIAEICAFNIARFSSD 240
           Y   L+VL++      P + P L                   + +I +           D
Sbjct: 175 YGYVLMVLYYLIHVIKPPVFPNLLLSPLK-------------QEKIVDGFDVGFDDKLED 221

Query: 241 KYRKINRSSLAHLFVSFLEKFS--------GLSLKASELGICPFTGQW----EHIRSNTR 288
                N SSL  L   F   ++         ++ +  +  +      W    EH  S  +
Sbjct: 222 IPPSQNYSSLGSLLHGFFRFYAYKFEPREKVVTFRRPDGYLTKQEKGWTSATEHTGSADQ 281

Query: 289 WLPNNHPLFIEDPFEQPENSARAVSEKNLAKISNAFEMTHFRLTSTN 335
            + + + L IEDPFE   N  R VS   L +I   F      L S +
Sbjct: 282 IIKDRYILAIEDPFEISHNVGRTVSSSGLYRIRGEFMAASRLLNSRS 328
>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like nucleotidyl transferase, terminal uridi transferase, UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe 972h-} PDB: 4e7x_A* 4e80_A Length = 405 Back     alignment and structure
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens} Length = 464 Back     alignment and structure
>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase, UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A* 2q0g_A* Length = 353 Back     alignment and structure
>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl transferase, editosome, transferase/RNA binding protein complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4 d.218.1.10 PDB: 2b51_A* 2b56_A* Length = 468 Back     alignment and structure
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae} Length = 323 Back     alignment and structure
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A* Length = 530 Back     alignment and structure
>1r89_A TRNA nucleotidyltransferase; CCA adding enzyme, incoming nucleotide, nucleotidyltransfera superfamily; HET: CTP; 1.80A {Archaeoglobus fulgidus} SCOP: a.160.1.3 d.218.1.7 d.58.16.2 PDB: 1r8a_A 1r8b_A* 1r8c_A* 1sz1_A* 1tfw_A* 1tfy_A* 1uet_A 1ueu_A* 1uev_A* 2dr5_A 2dr7_A 2dr8_A* 2dr9_A 2dra_A* 2drb_A 2dvi_A* 2zh1_A 2zh2_A 2zh3_A 2zh4_A ... Length = 437 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query445
4e8f_A405 Poly(A) RNA polymerase protein CID1; beta polymera 100.0
4fh3_A349 Poly(A) RNA polymerase protein CID1; nucleotidyltr 100.0
3nyb_A323 Poly(A) RNA polymerase protein 2; polya RNA polyme 100.0
3pq1_A464 Poly(A) RNA polymerase; nucleotidyl transferase, R 100.0
3hj4_A384 Minor editosome-associated tutase; nucleotidyltran 100.0
2ikf_A353 RNA uridylyl transferase; tutase, nucleotidyltrans 100.0
2b4v_A468 RNA editing complex protein MP57; tbret2, TBMP57, 100.0
1q79_A514 Poly(A) polymerase alpha; mRNA processing, nucleot 100.0
2hhp_A530 Poly(A) polymerase; template-independent RNA polym 100.0
1r89_A437 TRNA nucleotidyltransferase; CCA adding enzyme, in 99.67
1px5_A349 2'-5'-oligoadenylate synthetase 1; 5-stranded anti 99.46
4at7_A364 Interleukin enhancer-binding factor 2; transcripti 98.59
1no5_A114 Hypothetical protein HI0073; structural genomics, 97.69
4at7_B383 NF90, interleukin enhancer-binding factor 3; trans 97.46
1ylq_A96 Putative nucleotidyltransferase, hypothetical Pro 97.45
2rff_A111 Putative nucleotidyltransferase; NP_343093.1, nucl 97.25
1wot_A98 Putative minimal nucleotidyltransferase; alpha and 97.1
4ebj_A272 Aminoglycoside nucleotidyltransferase; structural 96.3
1kny_A253 Kntase, kanamycin nucleotidyltransferase; antibiot 95.47
2fmp_A335 DNA polymerase beta; nucleotidyl transferase, tran 92.83
2bcq_A335 DNA polymerase lambda; misalignment, extrahelical, 91.49
3jz0_A287 Lincosamide nucleotidyltransferase; alpha-beta str 88.18
1jaj_A174 DNA polymerase beta-like protein; CIS peptide, vir 83.53
2ihm_A360 POL MU, DNA polymerase MU; helix-turn-helix, trans 83.4
3b0x_A575 DNA polymerase beta family (X family); structural 83.11
>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like nucleotidyl transferase, terminal uridi transferase, UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe 972h-} PDB: 4e7x_A* 4e80_A Back     alignment and structure
Probab=100.00  E-value=1.3e-57  Score=467.51  Aligned_cols=311  Identities=24%  Similarity=0.358  Sum_probs=260.4

Q ss_pred             cccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhcCCCcEEEEecccccCCCCCCCCcceEEeecCCCccccc
Q 013307            3 SYNVLEPILKDILGMLNPLREDWETRMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIELSNGSCISSA   82 (445)
Q Consensus         3 ~~~~L~~ei~~f~~~~~Pt~ee~~~R~~vi~~l~~il~~~~~~~~~~v~~fGS~~tGl~l~~SDIDl~i~~~~~~~iss~   82 (445)
                      ..+.|+.+|.+|++++.||++|.+.|..+++.|++++++.  +|+++|.+|||+++|+++++||||++|..+....    
T Consensus        40 ~~~~L~~~i~~~~~~i~Pt~eE~~~R~~v~~~l~~~i~~~--~p~~~v~~fGS~~~G~~~~~SDiDl~v~~~~~~~----  113 (405)
T 4e8f_A           40 SHKEFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRI--SPDAELVAFGSLESGLALKNSDMDLCVLMDSRVQ----  113 (405)
T ss_dssp             SCHHHHHHHHHHHHHHBCCHHHHHHHHHHHHHHHHHHHHH--CTTCEEEEESHHHHTCCBSSCCEEEEEECCC-------
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH--CCCCEEEEEeeccCCCCCCCCCEEEEEEecCCCC----
Confidence            4578999999999999999999999999999999999998  7899999999999999999999999998765221    


Q ss_pred             chhhHHHHHHHHHHHHHhcCCceEEEEecccccceEEEE-eecc----ceEEEEeecccccccccHHHhHHhcccchhHH
Q 013307           83 GKKVKQSLLGDLLRALRQKGGYRRLQFVAHARVPILKFE-TIHQ----NISCDISIDNLCGQIKSKFLFWISQIDGRFRD  157 (445)
Q Consensus        83 ~k~~~~~~L~~l~~~L~~~~~~~~v~~I~~ArVPIIk~~-~~~~----gi~~DIs~~n~~g~~~s~ll~~~~~~~~~~r~  157 (445)
                          ...++..+++.|++.  ..+++.|.+||||||||. +..+    |+.|||||+|..|+.+|.+++.|.+.+|++|+
T Consensus       114 ----~~~~l~~l~~~L~~~--~~~v~~i~~ArVPIIK~~~d~~~g~~~gi~~DIs~~n~~g~~~t~ll~~y~~~~p~~r~  187 (405)
T 4e8f_A          114 ----SDTIALQFYEELIAE--GFEGKFLQRARIPIIKLTSDTKNGFGASFQCDIGFNNRLAIHNTLLLSSYTKLDARLKP  187 (405)
T ss_dssp             ----CTTHHHHHHHHHHHT--TEEEEEEEETTEEEEEEEEESSSSCCTTCCEEEEESCHHHHHHHHHHHHHHHHCTTHHH
T ss_pred             ----HHHHHHHHHHHHHhc--CCeeEEeccCCCcEEEEEeccCCCccCceEEEEeecccchHHHHHHHHHHHhhCHHHHH
Confidence                113778888888876  568889999999999999 7667    99999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCcchHHHHHHHHHh-hhcCCCCCCCccccCCCCCCCcccccchhhhhHHHHHhhccccc
Q 013307          158 MVLLVKEWAKAHDINNPKTGTFNSYSLSLLVLFHF-QTCVPAILPPLKDIYPGNLVDDLKGVRANAERQIAEICAFNIAR  236 (445)
Q Consensus       158 Lv~~iK~Wak~rgL~~~~~G~Lssy~l~lMvi~fL-Q~~~p~ilP~Lq~l~~~~~~~~~~~~~~~~e~~~~e~~~~n~~~  236 (445)
                      |+++||+||+.+||++++.||||||+|++|||+|| |...||+||+||++++.... ...|++.               .
T Consensus       188 Lv~~lK~wak~rgl~~~~~GglsSY~l~lmvi~fLqQ~~~ppvlP~Lq~~~~~~~~-~~~g~~~---------------~  251 (405)
T 4e8f_A          188 MVLLVKHWAKRKQINSPYFGTLSSYGYVLMVLYYLIHVIKPPVFPNLLLSPLKQEK-IVDGFDV---------------G  251 (405)
T ss_dssp             HHHHHHHHHHHTTCCCTTTTSCCHHHHHHHHHHHHHHTSSSCSSCCSSSCTTCCCC-EETTEEC---------------C
T ss_pred             HHHHHHHHHHHcCCCcCcCCCcChHHHHHHHHHHHHhccCCCcCCchhhccccccc-ccCCeee---------------c
Confidence            99999999999999999999999999999999999 77789999999998764211 1111111               1


Q ss_pred             ccc---cccccCCCCCHHHHHHHHHHhhc-cCCCCcccceeecc-CCceeeecccCCCCC-------------CCCCeEE
Q 013307          237 FSS---DKYRKINRSSLAHLFVSFLEKFS-GLSLKASELGICPF-TGQWEHIRSNTRWLP-------------NNHPLFI  298 (445)
Q Consensus       237 ~~~---~~~~~~n~~sl~~LL~~FF~~Ys-~~df~~~~~~Is~~-~g~~~~~~~~~~~~~-------------~~~~L~I  298 (445)
                      |..   ..+...|..++|+||++||+||| .|||  .+.+||++ .|+...+ ..+.|..             .+++|||
T Consensus       252 f~~~l~~~~~~~n~~slg~LL~~FF~yY~~~Fd~--~~~vIsir~~g~~~~K-~~k~w~~~~~~~g~~~~~~~~~~~L~I  328 (405)
T 4e8f_A          252 FDDKLEDIPPSQNYSSLGSLLHGFFRFYAYKFEP--REKVVTFRRPDGYLTK-QEKGWTSATEHTGSADQIIKDRYILAI  328 (405)
T ss_dssp             CCCCGGGSCCCSCCCCHHHHHHHHHHHHHHTCCT--TTBEECSSSTTCCCBH-HHHTCCC-------------CCCSSEE
T ss_pred             cccchhhhccccccccHHHHHHHHHHHHhcccCC--CCcEEEEecCCccccc-ccccccccccccccccccccCCceEEE
Confidence            111   12345678899999999999999 5666  56899998 6765432 2334532             3568999


Q ss_pred             ecCCCCCCCccccCCHHHHHHHHHHHHHHHHHhhcc--CCCcchhhhc
Q 013307          299 EDPFEQPENSARAVSEKNLAKISNAFEMTHFRLTST--NQTRYALLSS  344 (445)
Q Consensus       299 ~DPf~~~~Nvar~vs~~~~~~I~~~f~~A~~~L~~~--~~~~~s~L~~  344 (445)
                      +|||++++|+||+|+..++..|+.+|++|+++|...  ...|..+|+.
T Consensus       329 eDPf~~~~Nv~r~vs~~~~~~I~~eF~rA~~iL~~~~~~~~w~~Lf~~  376 (405)
T 4e8f_A          329 EDPFEISHNVGRTVSSSGLYRIRGEFMAASRLLNSRSYPIPYDSLFEE  376 (405)
T ss_dssp             BCSSSTTCBTTTTCCHHHHHHHHHHHHHHHHHHTCSSSSCCGGGGGSC
T ss_pred             ECCCCcccccccCCCHHHHHHHHHHHHHHHHHHhhhccCCCHHHHhCc
Confidence            999999999999999999999999999999999987  3456666543
>4fh3_A Poly(A) RNA polymerase protein CID1; nucleotidyltransferase, poly(U) polymerase, transferase; 2.00A {Schizosaccharomyces pombe} PDB: 4fh5_A* 4fhp_A* 4fhv_A* 4fhw_A* 4fhy_A* 4fhx_A* 4ep7_A* Back     alignment and structure
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae} Back     alignment and structure
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens} Back     alignment and structure
>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase, UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A* 2q0g_A* Back     alignment and structure
>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl transferase, editosome, transferase/RNA binding protein complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4 d.218.1.10 PDB: 2b51_A* 2b56_A* Back     alignment and structure
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A* Back     alignment and structure
>1r89_A TRNA nucleotidyltransferase; CCA adding enzyme, incoming nucleotide, nucleotidyltransfera superfamily; HET: CTP; 1.80A {Archaeoglobus fulgidus} SCOP: a.160.1.3 d.218.1.7 d.58.16.2 PDB: 1r8a_A 1r8b_A* 1r8c_A* 1sz1_A* 1tfw_A* 1tfy_A* 1uet_A 1ueu_A* 1uev_A* 2dr5_A 2dr7_A 2dr8_A* 2dr9_A 2dra_A* 2drb_A 2dvi_A* 2zh1_A 2zh2_A 2zh3_A 2zh4_A ... Back     alignment and structure
>1px5_A 2'-5'-oligoadenylate synthetase 1; 5-stranded antiparalel beta sheet, four helix bundle, transferase; HET: YCM; 1.74A {Sus scrofa} SCOP: a.160.1.2 d.218.1.6 Back     alignment and structure
>4at7_A Interleukin enhancer-binding factor 2; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_A* 4at9_A* 4atb_A* Back     alignment and structure
>1no5_A Hypothetical protein HI0073; structural genomics, nucleotidyl transferase structure 2 function project, S2F, unknown function; 1.80A {Haemophilus influenzae} SCOP: d.218.1.5 Back     alignment and structure
>1ylq_A Putative nucleotidyltransferase, hypothetical Pro AF0614; structural genomics, PSI, protein ST initiative; 2.02A {Archaeoglobus fulgidus} SCOP: d.218.1.5 Back     alignment and structure
>2rff_A Putative nucleotidyltransferase; NP_343093.1, nucleotidyltransferase domain, structural genomics; HET: MSE; 1.40A {Sulfolobus solfataricus P2} Back     alignment and structure
>1wot_A Putative minimal nucleotidyltransferase; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.218.1.5 Back     alignment and structure
>4ebj_A Aminoglycoside nucleotidyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 1.60A {Pseudomonas aeruginosa} PDB: 4ebk_A* Back     alignment and structure
>1kny_A Kntase, kanamycin nucleotidyltransferase; antibiotic resistance, plasmid; HET: APC KAN; 2.50A {Staphylococcus aureus} SCOP: a.24.16.1 d.218.1.1 PDB: 1kan_A Back     alignment and structure
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ... Back     alignment and structure
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ... Back     alignment and structure
>3jz0_A Lincosamide nucleotidyltransferase; alpha-beta structure, transferase-antibiotic CO; HET: APC CLY; 2.00A {Enterococcus faecium} PDB: 3jyy_A* Back     alignment and structure
>1jaj_A DNA polymerase beta-like protein; CIS peptide, viral protein; HET: DNA; NMR {African swine fever virus} SCOP: d.218.1.2 PDB: 1jqr_A* Back     alignment and structure
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus} Back     alignment and structure
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 445
d2b4va1183 a.160.1.4 (A:289-471) RNA editing terminal uridyl 2e-24
d2q66a2197 d.218.1.3 (A:5-201) Poly(A) polymerase, PAP, N-ter 3e-12
d1q79a2196 d.218.1.3 (A:19-214) Poly(A) polymerase, PAP, N-te 3e-12
>d2b4va1 a.160.1.4 (A:289-471) RNA editing terminal uridyl transferase 2, TUTase 2, RET2 {Trypanosoma brucei [TaxId: 5691]} Length = 183 Back     information, alignment and structure

class: All alpha proteins
fold: PAP/OAS1 substrate-binding domain
superfamily: PAP/OAS1 substrate-binding domain
family: RNA editing terminal uridyl transferase 2, RET2, domain 2
domain: RNA editing terminal uridyl transferase 2, TUTase 2, RET2
species: Trypanosoma brucei [TaxId: 5691]

 Score = 97.6 bits (242), Expect = 2e-24
 Identities = 22/190 (11%), Positives = 46/190 (24%), Gaps = 32/190 (16%)

Query: 154 RFRDMVLLVKEWAKAHDINNPKTGTFNSYSLSLLVLFHFQTCVPAILPPLKDIYPGNLVD 213
             R   + VK W KA ++         SY+++++ +++       +      +     + 
Sbjct: 3   AARHTAMAVKAWGKATNVGAGSGAMLTSYAVTVMFIYYLLVTRQVLWVDPWSLPHPAHLP 62

Query: 214 DLKGVRANAERQIAEICAFNIARFSSDKYRKINRSSLAHLFVSFLEKFSGLSLKASELGI 273
                                           + + L  L   F   F           +
Sbjct: 63  RYPDF---------------------SPLYDCDPTELGRLLHGFFI-FYAHHFDYEREVV 100

Query: 274 CPFTGQWEHIRSNTRWLPNN------HPLFIEDPFEQ----PENSARAVSEKNLAKISNA 323
                +  +        P N      +   IEDP+E       N  R +       +   
Sbjct: 101 SLNRNRRSYRSDIGWNFPQNKKGTFSYNFCIEDPYEDVGTGGLNLVRHLHPAKFQLVKQE 160

Query: 324 FEMTHFRLTS 333
           F      +  
Sbjct: 161 FLRAAQCMER 170
>d2q66a2 d.218.1.3 (A:5-201) Poly(A) polymerase, PAP, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 197 Back     information, alignment and structure
>d1q79a2 d.218.1.3 (A:19-214) Poly(A) polymerase, PAP, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Length = 196 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query445
d2b4va1183 RNA editing terminal uridyl transferase 2, TUTase 99.96
d2q66a2197 Poly(A) polymerase, PAP, N-terminal domain {Baker' 99.83
d1q79a2196 Poly(A) polymerase, PAP, N-terminal domain {Cow (B 99.81
d2q66a1150 Poly(A) polymerase, PAP, middle domain {Baker's ye 99.8
d1q79a1150 Poly(A) polymerase, PAP, middle domain {Cow (Bos t 99.8
d1r89a2142 tRNA nucleotidyltransferase, N-terminal domain {Ar 98.7
d1no5a_100 Hypothetical protein HI0073 {Haemophilus influenza 98.51
d1r89a1115 tRNA nucleotidyltransferase, second domain {Archae 98.4
d2b4va2259 RNA editing terminal uridyl transferase 2, TUTase 98.25
d1ylqa190 Putative nucleotidyltransferase AF0614 {Archaeon A 98.0
d1px5a1146 2'-5'-oligoadenylate synthetase 1, OAS1, second do 97.76
d1px5a2200 2'-5'-oligoadenylate synthetase 1, OAS1, N-termina 97.37
d1wota_98 Unnamed putative nucleotidyltransferase {Thermus t 97.16
d1knya2125 Kanamycin nucleotidyltransferase (KNTase), N-termi 96.96
d1jmsa4208 Terminal deoxynucleotidyl transferase {Mouse (Mus 96.09
d2fmpa3187 DNA polymerase beta, catalytic (31 kD) fragment {H 95.98
d2bcqa3190 DNA polymerase lambda {Human (Homo sapiens) [TaxId 95.94
d2pbea2135 Aminoglycoside 6-adenylyltransferase AadK {Bacillu 84.01
>d2b4va1 a.160.1.4 (A:289-471) RNA editing terminal uridyl transferase 2, TUTase 2, RET2 {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
class: All alpha proteins
fold: PAP/OAS1 substrate-binding domain
superfamily: PAP/OAS1 substrate-binding domain
family: RNA editing terminal uridyl transferase 2, RET2, domain 2
domain: RNA editing terminal uridyl transferase 2, TUTase 2, RET2
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.96  E-value=6.4e-30  Score=232.57  Aligned_cols=159  Identities=13%  Similarity=0.177  Sum_probs=118.7

Q ss_pred             cchhHHHHHHHHHHHHHCCCCCCCCCCCcchHHHHHHHHHhhhcCCCCCCCccccCCCCCCCcccccchhhhhHHHHHhh
Q 013307          152 DGRFRDMVLLVKEWAKAHDINNPKTGTFNSYSLSLLVLFHFQTCVPAILPPLKDIYPGNLVDDLKGVRANAERQIAEICA  231 (445)
Q Consensus       152 ~~~~r~Lv~~iK~Wak~rgL~~~~~G~Lssy~l~lMvi~fLQ~~~p~ilP~Lq~l~~~~~~~~~~~~~~~~e~~~~e~~~  231 (445)
                      .|++|+|+++||+|||.+||++++.|+||||+|++|||+|||...++++|+.+++........                 
T Consensus         1 ~P~~R~l~~~vK~Wak~~~i~~~~~G~lsSYal~lmvi~fLQ~~~~~~~~~~~~~~~~~~~~~-----------------   63 (183)
T d2b4va1           1 PVAARHTAMAVKAWGKATNVGAGSGAMLTSYAVTVMFIYYLLVTRQVLWVDPWSLPHPAHLPR-----------------   63 (183)
T ss_dssp             CTTHHHHHHHHHHHHHTCC-----CCSSCHHHHHHHHHHHHHHTTSSCCCCGGGSCCGGGSCS-----------------
T ss_pred             CcceeeHHHHHHHHHHHcCCCCccCCCchHHHHHHHHHHHHHhcCCCCCCCHHHhcccccccc-----------------
Confidence            378999999999999999999999999999999999999999998888888877643210000                 


Q ss_pred             cccccccccccccCCCCCHHHHHHHHHHhhcc-CCCCcccceeeccCCceeeecccCCCC-------CCCCCeEEecCCC
Q 013307          232 FNIARFSSDKYRKINRSSLAHLFVSFLEKFSG-LSLKASELGICPFTGQWEHIRSNTRWL-------PNNHPLFIEDPFE  303 (445)
Q Consensus       232 ~n~~~~~~~~~~~~n~~sl~~LL~~FF~~Ys~-~df~~~~~~Is~~~g~~~~~~~~~~~~-------~~~~~L~I~DPf~  303 (445)
                          ........+.|..++++||.+||+||+. |||  .+.+||++.|....++. ..|.       ...+.|+|+|||+
T Consensus        64 ----~~~~~~~~~~~~~sl~~Ll~~FF~~Y~~~fd~--~~~~Isi~~g~~~~k~~-~~~~~~~~~~~~~~~~l~IeDPfd  136 (183)
T d2b4va1          64 ----YPDFSPLYDCDPTELGRLLHGFFIFYAHHFDY--EREVVSLNRNRRSYRSD-IGWNFPQNKKGTFSYNFCIEDPYE  136 (183)
T ss_dssp             ----SCCCCCCCCCCHHHHHHHHHHHHHHHHHSSCT--TTEEBCSSSSSCEEHHH-HTCCCGGGEETTEECSSCBBCSST
T ss_pred             ----ccccccccCCCCCCHHHHHHHHHHHhccccCH--HHceeeeccCCccchhh-hhccccccCCCCCCcceEEeCCCc
Confidence                0000122345677999999999999984 555  57899999887654322 1221       2356799999998


Q ss_pred             C----CCCccccCCHHHHHHHHHHHHHHHHHhhcc
Q 013307          304 Q----PENSARAVSEKNLAKISNAFEMTHFRLTST  334 (445)
Q Consensus       304 ~----~~Nvar~vs~~~~~~I~~~f~~A~~~L~~~  334 (445)
                      +    ++|+||+++..++.+|+.+|++|+++|..-
T Consensus       137 ~~~~~~~Nv~r~v~~~~~~~I~~~f~~a~~~l~~~  171 (183)
T d2b4va1         137 DVGTGGLNLVRHLHPAKFQLVKQEFLRAAQCMERF  171 (183)
T ss_dssp             TTTTTCCBTTTTCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cccccccchhhhcCHHHHHHHHHHHHHHHHHHHHH
Confidence            6    467888888899999999999999999863
>d2q66a2 d.218.1.3 (A:5-201) Poly(A) polymerase, PAP, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q79a2 d.218.1.3 (A:19-214) Poly(A) polymerase, PAP, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2q66a1 a.160.1.1 (A:202-351) Poly(A) polymerase, PAP, middle domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q79a1 a.160.1.1 (A:215-364) Poly(A) polymerase, PAP, middle domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1r89a2 d.218.1.7 (A:1-142) tRNA nucleotidyltransferase, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1no5a_ d.218.1.5 (A:) Hypothetical protein HI0073 {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1r89a1 a.160.1.3 (A:143-257) tRNA nucleotidyltransferase, second domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2b4va2 d.218.1.10 (A:30-288) RNA editing terminal uridyl transferase 2, TUTase 2, RET2 {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1ylqa1 d.218.1.5 (A:1-90) Putative nucleotidyltransferase AF0614 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1px5a1 a.160.1.2 (A:201-346) 2'-5'-oligoadenylate synthetase 1, OAS1, second domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1px5a2 d.218.1.6 (A:1-200) 2'-5'-oligoadenylate synthetase 1, OAS1, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1wota_ d.218.1.5 (A:) Unnamed putative nucleotidyltransferase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1knya2 d.218.1.1 (A:1-125) Kanamycin nucleotidyltransferase (KNTase), N-terminal domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1jmsa4 d.218.1.2 (A:303-510) Terminal deoxynucleotidyl transferase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2fmpa3 d.218.1.2 (A:149-335) DNA polymerase beta, catalytic (31 kD) fragment {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bcqa3 d.218.1.2 (A:386-575) DNA polymerase lambda {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2pbea2 d.218.1.13 (A:1-135) Aminoglycoside 6-adenylyltransferase AadK {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure