Citrus Sinensis ID: 013310

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-----
Protein Sequence
MQLLNAVMATRMLTSTMKNGGGPSSEGIPFGSVWWFVYAGISCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCNAASMEALPIYLDKLFNQYVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVLGHNEALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELLQEEIVDETDEYVDVHKR
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHccccccccccccccccccEEEEEccccccHHHHHHHHHcccccccccccccccEEEEEEEHHccccccccccccccccccccccccccccHHHHHHHHHHcccEEEEEEccccccccccccccHHHHHHccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccccEEEEEcHHHHHHHHHcccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHcccccccEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHcHcHccHHHHccccccEEEEEccccccHHHHHHHHHccccEEEEEccccccEEEEEEHHHHHHcccccccccEEEEccccccccccccHHHHHHHHHccccEEEEEEEccccccccccHHHHHHHHHccccccccccccccHHcccccccccEEEcccccccccccHHHHccccccccccccccHHHHccccEEEEEccHHHHHHHHHHHHHcccccHHHHccc
Coil and Loop (DISEMBL)
MQLLNAVMATRMLTstmkngggpssegipfgsVWWFVYAGISCVLVLFAGIMSGLTLGLMSLGLVELEILqrsgtpsekkqaaaIFPVVQKQHQLLVTLLLCNAASMEALPIYLDKLFNQYVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVLGHNEALFRRAQLKALVTIHSqeagkggelthdeTTIISGaldltektaeeamtpiestfsldvnsklDWEAMGKILArghsrvpvysgnpknIIGLLLVKSLltvrpetetpvsavsirriprvpsdmplyDILNEFQKGSSHMAAVVKAkgksktlppmtdgkkpklneakggdcdltapllskqdektesvvvdvdrplssgsmnrlsssqrsdsttngliyasediedgeviGIITLEDVFEELLQEEIvdetdeyvdvhkr
Flexible Loop (DISEMBL)
MQLLNAVMATRMLTSTMKNGGGPSSEGIPFGSVWWFVYAGISCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCNAASMEALPIYLDKLFNQYVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVLGHNEALFRRAQLKALVTIHSqeagkggelthdETTIISGALDLTEKTAEEAMTpiestfsldvnsKLDWEAMGKILarghsrvpvysgNPKNIIGLLLVKSLLtvrpetetpvsavsirriprvpsdMPLYDILNEFQKGSSHMAAVVKakgksktlppmtdgkkpklneakggdCDLTapllskqdektesvvvdvdrplssgsmnrlsssqrsdsttnGLIYasediedgeVIGIITLEDVFEELLqeeivdetdeyvdvhkr
Low Complexity Region (SEG)
MQLLNAVMATRMLTSTMKNGGGPSSEGIPFGSVWWFVYAGISCVLVLFAgimsgltlglmslglveleILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCNAASMEALPIYLDKLFNQYVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVLGHNEALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPlssgsmnrlsssqrsdsttngLIYASediedgevigiiTLEDVFEELLQEEIVDETDEYVDVHKR
Disordered region (IsUnstruct)
***************************IPFGSVWWFVYAGISCVLVLFAGIMSGLTLGLMSLGLVELEILQR*********AAAIFPVVQKQHQLLVTLLLCNAASMEALPIYLDKLFNQYVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVLGHNEALFRRAQLKALVTIHSQE******LTHDETTIISGALDLT**********IESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEF***********************************************************************************GLIYASEDIEDGEVIGIITLEDVFEELLQEEIVDETD*Y******
Disordered Region (DISOPRED)
****************************PFGSVWWFVYAGISCVLVLFAGIMSGLTLGLMSLGLVELE**************AAIFPVVQKQHQLLVTLLLCNAASMEALPIYLDKLFNQYVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVLGHNE**************************HDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTA************************************STTNGLIYASEDIEDGEVIGIITLEDVFEELLQEEIVDETDE*******
Disordered Region (DISEMBL)
MQLLNAVMATRMLTSTMKNGGGPSSEGIPFGSVWWFVYAGISCVLVLFAGIMSGLTLGLMSLGLVELEILQR*********AAAIFPVVQKQHQLLVTLLLCNAASMEALPIYLDKLFNQYVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVLGHNEALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPLSS****************NGLIYASEDIEDGEVIGIITLEDVFEELLQEEIVDETD********
Disordered Region (DISPRO)
*QLLNAVMATRMLTSTMKNGGGPSSEGIPFGSVWWFVYAGISCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCNAASMEALPIYLDKLFNQYVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVLGHNEALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGD***TAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELLQEEIVDETDEYVDV*KR
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQLLNAVMATRMLTSTMKNGGGPSSEGIPFGSVWWFVYAGISCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCNAASMEALPIYLDKLFNQYVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVLGHNEALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELLQEEIVDETDEYVDVHKR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	445	2.2.26 [Sep-21-2011]
Q67XQ0	494	DUF21 domain-containing p	yes	no	0.977	0.880	0.786	0.0
Q4V3C7	495	DUF21 domain-containing p	no	no	0.979	0.880	0.743	0.0
Q9ZVS8	499	Putative DUF21 domain-con	no	no	0.934	0.833	0.739	1e-176
Q8VZI2	424	DUF21 domain-containing p	no	no	0.905	0.950	0.539	1e-117
Q9ZQR4	423	DUF21 domain-containing p	no	no	0.910	0.957	0.526	1e-116
Q9LTD8	500	DUF21 domain-containing p	no	no	0.885	0.788	0.496	1e-114
Q8RY60	527	DUF21 domain-containing p	no	no	0.943	0.796	0.489	1e-111
Q12296	706	Protein MAM3 OS=Saccharom	yes	no	0.662	0.417	0.418	3e-60
Q9USJ3	679	Uncharacterized protein C	yes	no	0.653	0.428	0.397	5e-56
A0JPA0	769	Metal transporter CNNM4 O	yes	no	0.685	0.396	0.393	1e-55

>sp|Q67XQ0|Y4424_ARATH DUF21 domain-containing protein At4g14240 OS=Arabidopsis thaliana GN=CBSDUF1 PE=2 SV=1

 Score =  684 bits (1766), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/445 (78%), Positives = 381/445 (85%), Gaps = 10/445 (2%)

Query: 1   MQLLNAVMATRMLTSTMKNGGGPSSEGIPFGSVWWFVYAGISCVLVLFAGIMSGLTLGLM 60
           M L+NAV A R+L+   ++ G    E IPFGS  W  YAGISC LVLFAGIMSGLTLGLM
Sbjct: 1   MHLINAVAAARILSGIGQSNGNNGGEAIPFGSFEWITYAGISCFLVLFAGIMSGLTLGLM 60

Query: 61  SLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCNAASMEALPIYLDKLFNQ 120
           SLGLVELEILQRSGTP+EKKQAAAIFPVVQKQHQLLVTLLLCNA +ME LPIYLDKLFN+
Sbjct: 61  SLGLVELEILQRSGTPNEKKQAAAIFPVVQKQHQLLVTLLLCNAMAMEGLPIYLDKLFNE 120

Query: 121 YVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVL 180
           YVAIILSVTFVL FGEVIPQAICTRYGLAVGANFVWLVRILM +CYPIA+PIGKILD VL
Sbjct: 121 YVAIILSVTFVLAFGEVIPQAICTRYGLAVGANFVWLVRILMTLCYPIAFPIGKILDLVL 180

Query: 181 GHNEALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFS 240
           GHN+ALFRRAQLKALV+IHSQEAGKGGELTHDETTIISGALDLTEKTA+EAMTPIESTFS
Sbjct: 181 GHNDALFRRAQLKALVSIHSQEAGKGGELTHDETTIISGALDLTEKTAQEAMTPIESTFS 240

Query: 241 LDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRR 300
           LDVNSKLDWEAMGKILARGHSRVPVYSGNPKN+IGLLLVKSLLTVRPETET VSAV IRR
Sbjct: 241 LDVNSKLDWEAMGKILARGHSRVPVYSGNPKNVIGLLLVKSLLTVRPETETLVSAVCIRR 300

Query: 301 IPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTA 360
           IPRVP+DMPLYDILNEFQKGSSHMAAVVK K     +PP T  ++   +  +  D DLTA
Sbjct: 301 IPRVPADMPLYDILNEFQKGSSHMAAVVKVK-GKSKVPPSTLLEE---HTDESNDSDLTA 356

Query: 361 PLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITL 420
           PLL K++   ++V+V +D+       N  S  Q ++S  +G  + SE IEDGEVIGIITL
Sbjct: 357 PLLLKREGNHDNVIVTIDKA------NGQSFFQNNESGPHGFSHTSEAIEDGEVIGIITL 410

Query: 421 EDVFEELLQEEIVDETDEYVDVHKR 445
           EDVFEELLQEEIVDETDEYVDVHKR
Sbjct: 411 EDVFEELLQEEIVDETDEYVDVHKR 435

Arabidopsis thaliana (taxid: 3702)

>sp|Q4V3C7|Y4423_ARATH DUF21 domain-containing protein At4g14230 OS=Arabidopsis thaliana GN=CBSDUF2 PE=2 SV=1

 Score =  655 bits (1691), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/445 (74%), Positives = 369/445 (82%), Gaps = 9/445 (2%)

Query: 1   MQLLNAVMATRMLTSTMKNGGGPSSEGIPFGSVWWFVYAGISCVLVLFAGIMSGLTLGLM 60
           M  +NAV+A RML   +       SE IPFGS+ W  YAGISC LVLFAGIMSGLTLGLM
Sbjct: 1   MHPINAVVAARMLAG-ISQSNALQSEAIPFGSLEWITYAGISCFLVLFAGIMSGLTLGLM 59

Query: 61  SLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCNAASMEALPIYLDKLFNQ 120
           SLGLVELEILQRSGTP EKKQ+AAIFPVVQKQHQLLVTLLL NA +ME LPIYLDK+FN+
Sbjct: 60  SLGLVELEILQRSGTPKEKKQSAAIFPVVQKQHQLLVTLLLFNALAMEGLPIYLDKIFNE 119

Query: 121 YVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVL 180
           YVAIILSVTFVLF GEVIPQAICTRYGLAVGAN VWLVRILM++ YPI++PI K+LDWVL
Sbjct: 120 YVAIILSVTFVLFVGEVIPQAICTRYGLAVGANLVWLVRILMVLSYPISFPIAKMLDWVL 179

Query: 181 GHNEALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFS 240
           GHN+ LFRRAQLKALV+IH + AGKGGELTHDETTIISGALDLTEKTA+EAMTPIESTFS
Sbjct: 180 GHNDPLFRRAQLKALVSIHGEAAGKGGELTHDETTIISGALDLTEKTAQEAMTPIESTFS 239

Query: 241 LDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRR 300
           LDVNSKLD EAM KI ARGHSRVPVYS NPKN+IGLLLVKSLLTVRPET T VSAV IRR
Sbjct: 240 LDVNSKLDREAMDKIQARGHSRVPVYSDNPKNVIGLLLVKSLLTVRPETGTLVSAVGIRR 299

Query: 301 IPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTA 360
           IPRVP++MPLYDILNEFQKGSSHMAAVVK KGKSK  P     +    +     + +LTA
Sbjct: 300 IPRVPANMPLYDILNEFQKGSSHMAAVVKVKGKSKGHPSTLHEENSGESNVSSNNSELTA 359

Query: 361 PLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITL 420
           PLL K++   +SV+V +D+  ++G       S  S++   G  + SE+IEDG+VIGIITL
Sbjct: 360 PLLLKREGNHDSVIVRIDK--ANG------QSFISEAGRQGFSHTSEEIEDGDVIGIITL 411

Query: 421 EDVFEELLQEEIVDETDEYVDVHKR 445
           EDVFEELLQEEIVDETDEY+DVHKR
Sbjct: 412 EDVFEELLQEEIVDETDEYIDVHKR 436

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZVS8|Y1327_ARATH Putative DUF21 domain-containing protein At1g03270 OS=Arabidopsis thaliana GN=CBSDUF4 PE=4 SV=2

 Score =  619 bits (1596), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 312/422 (73%), Positives = 357/422 (84%), Gaps = 6/422 (1%)

Query: 25  SEGIPFGSVWWFVYAGISCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPSEKKQAAA 84
           +E I FGS WWFV  G++C LVLFAGIMSGLTLGLMSLGLVELEILQ+SG+ +EKKQAAA
Sbjct: 23  AEDIRFGSPWWFVVVGVACFLVLFAGIMSGLTLGLMSLGLVELEILQQSGSSAEKKQAAA 82

Query: 85  IFPVVQKQHQLLVTLLLCNAASMEALPIYLDKLFNQYVAIILSVTFVLFFGEVIPQAICT 144
           I PVV+KQHQLLVTLLLCNAA+MEALPI LDK+F+ +VA++LSVTFVL FGE+IPQAIC+
Sbjct: 83  ILPVVKKQHQLLVTLLLCNAAAMEALPICLDKIFHPFVAVLLSVTFVLAFGEIIPQAICS 142

Query: 145 RYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVLGHNEALFRRAQLKALVTIHSQEAG 204
           RYGLAVGANF+WLVRILMIICYPIAYPIGK+LD V+GHN+ LFRRAQLKALV+IHSQEAG
Sbjct: 143 RYGLAVGANFLWLVRILMIICYPIAYPIGKVLDAVIGHNDTLFRRAQLKALVSIHSQEAG 202

Query: 205 KGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVP 264
           KGGELTH+ET IISGALDL++KTAEEAMTPIESTFSLDVN+KLDWE +GKIL+RGHSR+P
Sbjct: 203 KGGELTHEETMIISGALDLSQKTAEEAMTPIESTFSLDVNTKLDWETIGKILSRGHSRIP 262

Query: 265 VYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHM 324
           VY GNPKNIIGLLLVKSLLTVR ETE PVS+VSIR+IPRVPSDMPLYDILNEFQKGSSHM
Sbjct: 263 VYLGNPKNIIGLLLVKSLLTVRAETEAPVSSVSIRKIPRVPSDMPLYDILNEFQKGSSHM 322

Query: 325 AA--VVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPLS 382
           AA   VK K K   +  +++G+ PK N       +LTAPLL  +   +  VVVD+D+ + 
Sbjct: 323 AAVVKVKDKDKKNNMQLLSNGETPKENMKFYQSSNLTAPLLKHE---SHDVVVDIDK-VP 378

Query: 383 SGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELLQEEIVDETDEYVDV 442
               NR  + Q++ + T  L    ED ED EVIGIITLEDVFEELLQ EIVDETD Y+DV
Sbjct: 379 KHVKNRGRNFQQNGTVTRDLPCLLEDNEDAEVIGIITLEDVFEELLQAEIVDETDVYIDV 438

Query: 443 HK 444
           HK
Sbjct: 439 HK 440

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VZI2|Y4370_ARATH DUF21 domain-containing protein At4g33700 OS=Arabidopsis thaliana GN=CBSDUF6 PE=1 SV=1

 Score =  423 bits (1088), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 224/415 (53%), Positives = 286/415 (68%), Gaps = 12/415 (2%)

Query: 35  WFVYAGISCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQ 94
           +F++  +   LVLFAG+MSGLTLGLMSL LV+LE+L +SGTP  +K AA I PVV+ QH 
Sbjct: 12  FFIHIAVIVFLVLFAGLMSGLTLGLMSLSLVDLEVLAKSGTPEHRKYAAKILPVVKNQHL 71

Query: 95  LLVTLLLCNAASMEALPIYLDKLFNQYVAIILSVTFVLFFGEVIPQAICTRYGLAVGANF 154
           LLVTLL+CNAA+ME LPI+LD L   + AI++SVT +L FGE+IPQ+IC+RYGLA+GA  
Sbjct: 72  LLVTLLICNAAAMETLPIFLDGLVTAWGAILISVTLILLFGEIIPQSICSRYGLAIGATV 131

Query: 155 VWLVRILMIICYPIAYPIGKILDWVLGHNEA-LFRRAQLKALVTIHSQEAGKGGELTHDE 213
              VR+L+ IC P+A+PI K+LD++LGH  A LFRRA+LK LV  H  EAGKGGELTHDE
Sbjct: 132 APFVRVLVFICLPVAWPISKLLDFLLGHRRAALFRRAELKTLVDFHGNEAGKGGELTHDE 191

Query: 214 TTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNI 273
           TTII+GAL+L+EK  ++AMTPI   F +D+N+KLD + M  IL +GHSRVPVY   P NI
Sbjct: 192 TTIIAGALELSEKMVKDAMTPISDIFVIDINAKLDRDLMNLILEKGHSRVPVYYEQPTNI 251

Query: 274 IGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGK 333
           IGL+LVK+LLT+ P+ E PV  V+IRRIPRVP  +PLYDILNEFQKG SHMA VV+   K
Sbjct: 252 IGLVLVKNLLTINPDEEIPVKNVTIRRIPRVPEILPLYDILNEFQKGLSHMAVVVRQCDK 311

Query: 334 SKTLPPMTDGKKPKLNEAK-GGDCDLTAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSSS 392
              LP     K   + EA+   D + T     +      S+      P  + S    S S
Sbjct: 312 IHPLP----SKNGSVKEARVDVDSEGTPTPQERMLRTKRSLQKWKSFPNRASSFKGGSKS 367

Query: 393 QR--SDSTTNGLIYASEDI----EDGEVIGIITLEDVFEELLQEEIVDETDEYVD 441
           ++   D+  + L      +    E+ E +GIIT+EDV EELLQEEI DETD + +
Sbjct: 368 KKWSKDNDADILQLNGNPLPKLAEEEEAVGIITMEDVIEELLQEEIFDETDHHFE 422

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZQR4|Y2452_ARATH DUF21 domain-containing protein At2g14520 OS=Arabidopsis thaliana GN=CBSDUF3 PE=2 SV=2

 Score =  420 bits (1079), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 217/412 (52%), Positives = 286/412 (69%), Gaps = 7/412 (1%)

Query: 35  WFVYAGISCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQ 94
           +F++  +  +LVLFAG+MSGLTLGLMS+ LV+LE+L +SGTP ++  AA I PVV+ QH 
Sbjct: 12  FFIHIAVIVLLVLFAGLMSGLTLGLMSMSLVDLEVLAKSGTPRDRIHAAKILPVVKNQHL 71

Query: 95  LLVTLLLCNAASMEALPIYLDKLFNQYVAIILSVTFVLFFGEVIPQAICTRYGLAVGANF 154
           LL TLL+CNAA+MEALPI+LD L   + AI++SVT +L FGE+IPQ++C+R+GLA+GA  
Sbjct: 72  LLCTLLICNAAAMEALPIFLDALVTAWGAILISVTLILLFGEIIPQSVCSRHGLAIGATV 131

Query: 155 VWLVRILMIICYPIAYPIGKILDWVLGHNE-ALFRRAQLKALVTIHSQEAGKGGELTHDE 213
              VR+L+ IC P+A+PI K+LD++LGH   ALFRRA+LK LV +H  EAGKGGELTHDE
Sbjct: 132 APFVRVLVWICLPVAWPISKLLDFLLGHGRVALFRRAELKTLVDLHGNEAGKGGELTHDE 191

Query: 214 TTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNI 273
           TTII+GAL+L+EK A++AMTPI  TF +D+N+KLD + M  IL +GHSRVPVY     NI
Sbjct: 192 TTIIAGALELSEKMAKDAMTPISDTFVIDINAKLDRDLMNLILDKGHSRVPVYYEQRTNI 251

Query: 274 IGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGK 333
           IGL+LVK+LLT+ P+ E  V  V+IRRIPRVP  +PLYDILNEFQKG SHMA VV+   K
Sbjct: 252 IGLVLVKNLLTINPDEEIQVKNVTIRRIPRVPETLPLYDILNEFQKGHSHMAVVVRQCDK 311

Query: 334 SKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQ 393
              L    D     +NE +  D D        + ++  S+      P  + S+   S   
Sbjct: 312 IHPLQS-NDAANETVNEVR-VDVDYERSPQETKLKRRRSLQKWKSFPNRANSLGSRSKRW 369

Query: 394 RSDSTTNGLIYASEDI----EDGEVIGIITLEDVFEELLQEEIVDETDEYVD 441
             D+  + L      +    E+ + +GIIT+EDV EELLQEEI DETD + +
Sbjct: 370 SKDNDADILQLNEHPLPKLDEEEDAVGIITMEDVIEELLQEEIFDETDHHFE 421

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LTD8|Y5279_ARATH DUF21 domain-containing protein At5g52790 OS=Arabidopsis thaliana GN=CBSDUF5 PE=2 SV=2

 Score =  412 bits (1058), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 210/423 (49%), Positives = 290/423 (68%), Gaps = 29/423 (6%)

Query: 24  SSEGIPFGSVWWFVYAGISCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPSEKKQAA 83
           ++  +P     ++VY  +   LV+FAG+MSGLTLGLMSL +VELE++ ++G P ++K A 
Sbjct: 2   AANDVPCCETMFWVYLLVCVALVVFAGLMSGLTLGLMSLSIVELEVMIKAGEPHDRKNAE 61

Query: 84  AIFPVVQKQHQLLVTLLLCNAASMEALPIYLDKLFNQYVAIILSVTFVLFFGEVIPQAIC 143
            I P+V+ QH LL TLL+ NA +MEALPI++D L   + AI++SVT +L FGE+IPQA+C
Sbjct: 62  KILPLVKNQHLLLCTLLIGNALAMEALPIFVDSLLPAWGAILISVTLILAFGEIIPQAVC 121

Query: 144 TRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVLG-HNEALFRRAQLKALVTIHSQE 202
           +RYGL++GA   +LVR+++I+ +P++YPI K+LD +LG  +  L  RA+LK+LV +H  E
Sbjct: 122 SRYGLSIGAKLSFLVRLIIIVFFPLSYPISKLLDLLLGKRHSTLLGRAELKSLVYMHGNE 181

Query: 203 AGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSR 262
           AGKGGELTHDETTIISGALD+++K+A++AMTP+   FSLD+N KLD + MG I + GHSR
Sbjct: 182 AGKGGELTHDETTIISGALDMSQKSAKDAMTPVSQIFSLDINFKLDEKTMGLIASAGHSR 241

Query: 263 VPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSS 322
           +P+YS NP  IIG +LVK+L+ VRPE ET +  + IRR+P+V  ++PLYDILN FQ G S
Sbjct: 242 IPIYSVNPNVIIGFILVKNLIKVRPEDETSIRDLPIRRMPKVDLNLPLYDILNIFQTGRS 301

Query: 323 HMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPLS 382
           HMAAVV  K  + T  P+ + K    +  K  +  L+ P L+  +   +S +  +D    
Sbjct: 302 HMAAVVGTKNHTNTNTPVHE-KSINGSPNKDANVFLSIPALNSSETSHQSPIRYID---- 356

Query: 383 SGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELLQEEIVDETDEYVDV 442
                                  S   ED EVIGIITLEDV EEL+QEEI DETD+YV++
Sbjct: 357 -----------------------SISDEDEEVIGIITLEDVMEELIQEEIYDETDQYVEL 393

Query: 443 HKR 445
           HKR
Sbjct: 394 HKR 396

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RY60|Y1733_ARATH DUF21 domain-containing protein At1g47330 OS=Arabidopsis thaliana GN=CBSDUF7 PE=1 SV=1

 Score =  402 bits (1033), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 218/445 (48%), Positives = 290/445 (65%), Gaps = 25/445 (5%)

Query: 25  SEGIPFGSVWWFVYAGISCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPSEKKQAAA 84
           S  IP     + +Y  I   LV FAG+M+GLTLGLMSLGLV+LE+L +SG P ++  A  
Sbjct: 2   SSDIPCCGTTFSLYVVIIIALVAFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRINAGK 61

Query: 85  IFPVVQKQHQLLVTLLLCNAASMEALPIYLDKLFNQYVAIILSVTFVLFFGEVIPQAICT 144
           IFPVV+ QH LL TLL+ N+ +MEALPI+LDK+   ++AI+LSVT +L FGE++PQA+CT
Sbjct: 62  IFPVVKNQHLLLCTLLIGNSMAMEALPIFLDKIVPPWLAILLSVTLILVFGEIMPQAVCT 121

Query: 145 RYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVLGHNEA-LFRRAQLKALVTIHSQEA 203
           RYGL VGA     VR+L+++ +PI+YPI K+LDW+LG     L RRA+LK  V  H  EA
Sbjct: 122 RYGLKVGAIMAPFVRVLLVLFFPISYPISKVLDWMLGKGHGVLLRRAELKTFVNFHGNEA 181

Query: 204 GKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRV 263
           GKGG+LT DET+II+GAL+LTEKTA++AMTPI + FSL++++ L+ E +  I++ GHSRV
Sbjct: 182 GKGGDLTTDETSIITGALELTEKTAKDAMTPISNAFSLELDTPLNLETLNTIMSVGHSRV 241

Query: 264 PVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSH 323
           PVY  NP +IIGL+LVK+LL V    E P+  +S+R+IPRV   MPLYDILNEFQKG SH
Sbjct: 242 PVYFRNPTHIIGLILVKNLLAVDARKEVPLRKMSMRKIPRVSETMPLYDILNEFQKGHSH 301

Query: 324 MAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSK---QDEKTESVVVDVDR- 379
           +A V K   + +  P  ++    +    K  D +L      K   Q E +E  V  ++  
Sbjct: 302 IAVVYKDLDEQEQSPETSENGIERRKNKKTKD-ELFKDSCRKPKAQFEVSEKEVFKIETG 360

Query: 380 PLSSGSMNRLSSSQRSDSTT----------NGLIYASEDIEDG---------EVIGIITL 420
              SG        Q S  T+           G  +   DIE+          EV+G+IT+
Sbjct: 361 DAKSGKSENGEEQQGSGKTSLLAAPAKKRHRGCSFCILDIENTPIPDFPTNEEVVGVITM 420

Query: 421 EDVFEELLQEEIVDETDEYVDVHKR 445
           EDV EELLQEEI+DETDEYV++H R
Sbjct: 421 EDVIEELLQEEILDETDEYVNIHNR 445

Arabidopsis thaliana (taxid: 3702)

>sp|Q12296|MAM3_YEAST Protein MAM3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MAM3 PE=1 SV=1

 Score =  233 bits (593), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 126/301 (41%), Positives = 186/301 (61%), Gaps = 6/301 (1%)

Query: 38  YAGISCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPSEKKQAAAIFPVVQK-QHQLL 96
           Y  IS +LVL  G+ +GLTLGLM    V L+++  SG+ SEKK A  +  ++ + +H +L
Sbjct: 64  YYIISIILVLLGGVFAGLTLGLMGQDEVYLKVISTSGSNSEKKLAKRVLDLISRGKHWVL 123

Query: 97  VTLLLCNAASMEALPIYLDK-LFNQYVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFV 155
           VTLLL N  + E LPI LD+ L   + A++ S   ++ FGE+IPQ++C +YGL VGA F 
Sbjct: 124 VTLLLSNVITNETLPIVLDRCLGGGWQAVVSSTILIVIFGEIIPQSVCVKYGLQVGAFFC 183

Query: 156 WLVRILMIICYPIAYPIGKILDWVLGHNEA-LFRRAQLKALVTIHSQEAGKGGELTHDET 214
             V +LM + YP+AYPI  +LD++LG +   +++++ LK LVT+H     +   LT DE 
Sbjct: 184 PFVLVLMYLMYPVAYPIATLLDYMLGEDHGTMYKKSGLKTLVTLHRTMGVE--RLTKDEV 241

Query: 215 TIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGN-PKNI 273
           TIIS  LDL  K  EE MTPIE+ F++  ++ LD + + KI   G SR+P++  N P N 
Sbjct: 242 TIISAVLDLKAKRVEEIMTPIENVFTMSADTILDDKTVEKIFNSGFSRIPIFLPNEPNNF 301

Query: 274 IGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGK 333
           IG+LLV+ L++  P+   P+S   +  +P    +    +ILN FQ+G +HM  V K  G 
Sbjct: 302 IGMLLVRVLISYDPDDCLPISHFPLATLPETSPNTSCLNILNYFQEGKAHMCVVSKEPGS 361

Query: 334 S 334
           S
Sbjct: 362 S 362

Involved in metal homeostasis and more specially in manganese sensitivity.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q9USJ3|YJ23_SCHPO Uncharacterized protein C4B3.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC4B3.03c PE=1 SV=1

 Score =  218 bits (556), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 118/297 (39%), Positives = 187/297 (62%), Gaps = 6/297 (2%)

Query: 41  ISCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPSEKKQAAAIFPVVQK-QHQLLVTL 99
           IS VL+L  G+ +GLT+GLM    + L++L++SG  SE+  A  +  ++++ +H +LVTL
Sbjct: 68  ISAVLILLGGVFAGLTIGLMGCDDLHLQVLEQSGDASERVHARKVLKLLRRGKHWVLVTL 127

Query: 100 LLCNAASMEALPIYLDKLFNQ-YVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLV 158
           LL N    E LPI  D +    + A+++S   ++ FGEVIPQA C RYGL++GA    +V
Sbjct: 128 LLGNVIVNETLPIVFDSIIGGGWPAVLISTAMIVIFGEVIPQATCVRYGLSIGAKLEPIV 187

Query: 159 RILMIICYPIAYPIGKILDWVLGHNEA-LFRRAQLKALVTIHSQEAGKGGELTHDETTII 217
             +M + +PIAYP   ILD  LG +++ +++++ LK LVT+H ++ G   +L  DE TII
Sbjct: 188 LFMMYLLWPIAYPTALILDACLGESQSTMYKKSGLKTLVTLH-RDLGI-DKLNQDEVTII 245

Query: 218 SGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYS-GNPKNIIGL 276
           +  LDL EK AE  MTPIE  F+L ++  LD + +G+I+  G+SR+PV+  G P + IG+
Sbjct: 246 TAVLDLREKHAESIMTPIEDVFTLPMDRILDEDLIGEIICAGYSRIPVHKPGFPHDFIGM 305

Query: 277 LLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGK 333
           LL K+L+   P+ + PV   ++  +P+   +    D+LN  Q+G SHM  +  + G+
Sbjct: 306 LLTKTLIGYDPDDKWPVGKFALATLPQTWPNTSCLDLLNYCQEGKSHMILISNSPGE 362

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|A0JPA0|CNNM4_XENTR Metal transporter CNNM4 OS=Xenopus tropicalis GN=cnnm4 PE=2 SV=1

 Score =  218 bits (554), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 126/320 (39%), Positives = 186/320 (58%), Gaps = 15/320 (4%)

Query: 26  EGIPFGSVWWFVYAGISCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPSEKKQAAAI 85
           E  P   +W  + A I  VL+  +GI SGL LGLM+L  +EL ++QR GT  EK+ A+ I
Sbjct: 172 EEKPLLPIW--LQACIIAVLLTLSGIFSGLNLGLMALDPMELRVVQRCGTEKEKRYASKI 229

Query: 86  FPVVQKQHQLLVTLLLCNAASMEALPIYLDKLFNQYVAIIL-SVTFVLFFGEVIPQAICT 144
            PV +K + LL +LLL N      L   LD+L    +A +L S T ++  GE++PQA+C+
Sbjct: 230 EPVRRKGNYLLCSLLLGNVLVNTTLTALLDELIGSGLAAVLASTTGIVVLGEIVPQALCS 289

Query: 145 RYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVLGHN-EALFRRAQLKALVTIHSQEA 203
           R+GLAVGAN +WL RI M++ +P+AYP+ ++LD  LG     ++ R +L  ++ +    +
Sbjct: 290 RHGLAVGANTLWLTRIFMLLTFPVAYPVSRLLDCALGQEIGTVYNREKLLEMLKVTEPYS 349

Query: 204 GKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRV 263
           G    +  +E  II GAL+L  KT E+ MT +E  F L  ++ LD+  M  I+  G++R+
Sbjct: 350 G----IVREEMNIIQGALELRTKTVEDVMTKVEDCFMLPSDAVLDFNTMSSIMESGYTRI 405

Query: 264 PVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVP-----SDMPLYDILNEFQ 318
           PVY     NI+ +L VK L  V P+  TP+S  +I R    P     SD  L  +L EF+
Sbjct: 406 PVYENERSNIVDILYVKDLAFVDPDDCTPLS--TITRFYSHPLHFVFSDTKLDAVLEEFK 463

Query: 319 KGSSHMAAVVKAKGKSKTLP 338
           KG SH+A V K   + +  P
Sbjct: 464 KGKSHLAIVQKVNSEGEGDP 483

Probable metal transporter.

Xenopus tropicalis (taxid: 8364)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	445
255551477	502	conserved hypothetical protein [Ricinus	0.988	0.876	0.865	0.0
224102601	500	predicted protein [Populus trichocarpa]	0.986	0.878	0.862	0.0
224107237	502	predicted protein [Populus trichocarpa]	0.986	0.874	0.842	0.0
449465210	496	PREDICTED: DUF21 domain-containing prote	0.993	0.891	0.834	0.0
449528085	496	PREDICTED: DUF21 domain-containing prote	0.993	0.891	0.834	0.0
356557879	489	PREDICTED: DUF21 domain-containing prote	0.986	0.897	0.833	0.0
356564538	493	PREDICTED: DUF21 domain-containing prote	0.988	0.892	0.816	0.0
356521943	493	PREDICTED: DUF21 domain-containing prote	0.988	0.892	0.809	0.0
225432520	505	PREDICTED: DUF21 domain-containing prote	0.986	0.869	0.816	0.0
225436964	504	PREDICTED: putative DUF21 domain-contain	0.986	0.871	0.776	0.0

>gi|255551477|ref|XP_002516784.1| conserved hypothetical protein [Ricinus communis] gi|223543872|gb|EEF45398.1| conserved hypothetical protein [Ricinus communis]

 Score =  781 bits (2018), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/445 (86%), Positives = 412/445 (92%), Gaps = 5/445 (1%)

Query: 1   MQLLNAVMATRMLTSTMKNGGGPSSEGIPFGSVWWFVYAGISCVLVLFAGIMSGLTLGLM 60
           M L+NAVMATRMLT   ++ G   SEGIPFGS+WWF+YAGISC LVLFAGIMSGLTLGLM
Sbjct: 1   MHLVNAVMATRMLTMLGQSNG--VSEGIPFGSIWWFIYAGISCFLVLFAGIMSGLTLGLM 58

Query: 61  SLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCNAASMEALPIYLDKLFNQ 120
           SLGLVELEILQRSGT SEKKQAAAI PVVQKQHQLLVTLLLCNAA+MEALPIYLDKLFNQ
Sbjct: 59  SLGLVELEILQRSGTSSEKKQAAAILPVVQKQHQLLVTLLLCNAAAMEALPIYLDKLFNQ 118

Query: 121 YVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVL 180
           YVAIILSVTFVLFFGEVIPQ+IC+RYGLAVGANFVWLVRILMIICYPI+YPIGKILDWVL
Sbjct: 119 YVAIILSVTFVLFFGEVIPQSICSRYGLAVGANFVWLVRILMIICYPISYPIGKILDWVL 178

Query: 181 GHNEALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFS 240
           GHNEALFRRAQLK LV+IHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFS
Sbjct: 179 GHNEALFRRAQLKVLVSIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFS 238

Query: 241 LDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRR 300
           LDVNSKLDWEAMGK+LARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRR
Sbjct: 239 LDVNSKLDWEAMGKVLARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRR 298

Query: 301 IPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTA 360
           IPRVPSDMPLYDILNEFQKGSSHMAAVVK+K KSK   PMT G+K + N+A  GD +LT 
Sbjct: 299 IPRVPSDMPLYDILNEFQKGSSHMAAVVKSKAKSKI--PMTTGEKQEENKATAGDSELTI 356

Query: 361 PLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITL 420
           PLL KQDEK ++V++D+DR +S  S N+ +SSQR D+ TNGL+ +SEDIEDGEVIGIITL
Sbjct: 357 PLLVKQDEKLDTVILDMDR-VSRLSSNKQTSSQRFDAATNGLVQSSEDIEDGEVIGIITL 415

Query: 421 EDVFEELLQEEIVDETDEYVDVHKR 445
           EDVFEELLQEEIVDETDEYVDVHKR
Sbjct: 416 EDVFEELLQEEIVDETDEYVDVHKR 440

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224102601|ref|XP_002312743.1| predicted protein [Populus trichocarpa] gi|222852563|gb|EEE90110.1| predicted protein [Populus trichocarpa]

 Score =  772 bits (1993), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/445 (86%), Positives = 407/445 (91%), Gaps = 6/445 (1%)

Query: 1   MQLLNAVMATRMLTSTMKNGGGPSSEGIPFGSVWWFVYAGISCVLVLFAGIMSGLTLGLM 60
           MQL+NAVMATRMLT   ++ G    +GIPFGSV WFVYAGISC LV+FAGIMSGLTLGLM
Sbjct: 1   MQLINAVMATRMLTVLAQSNG---EDGIPFGSVSWFVYAGISCFLVIFAGIMSGLTLGLM 57

Query: 61  SLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCNAASMEALPIYLDKLFNQ 120
           SLGLV+LEILQRSGT +EKKQAAAI PVVQKQHQLLVTLLLCNA +MEALPIYLDKLFNQ
Sbjct: 58  SLGLVDLEILQRSGTSTEKKQAAAILPVVQKQHQLLVTLLLCNAIAMEALPIYLDKLFNQ 117

Query: 121 YVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVL 180
           YVAIILSVTFVL FGEVIPQAICTRYGLAVGANFVWLVRILMI CYP+AYPIGK+LD VL
Sbjct: 118 YVAIILSVTFVLAFGEVIPQAICTRYGLAVGANFVWLVRILMITCYPVAYPIGKVLDCVL 177

Query: 181 GHNEALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFS 240
           GHNEALFRRAQLKALV+IHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFS
Sbjct: 178 GHNEALFRRAQLKALVSIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFS 237

Query: 241 LDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRR 300
           LDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRR
Sbjct: 238 LDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRR 297

Query: 301 IPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTA 360
           IPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSK LPP  DG++ + ++  G D  LT 
Sbjct: 298 IPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKDLPPAIDGEEQEGSKVTGRDSQLTT 357

Query: 361 PLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITL 420
           PLLSKQDEK++SVVVD+DR   S   +R  SSQR+D++TNGL   SEDIEDGEVIGIITL
Sbjct: 358 PLLSKQDEKSDSVVVDIDRVSRS---SRHPSSQRNDTSTNGLPQLSEDIEDGEVIGIITL 414

Query: 421 EDVFEELLQEEIVDETDEYVDVHKR 445
           EDVFEELLQEEIVDETDEYVDVHKR
Sbjct: 415 EDVFEELLQEEIVDETDEYVDVHKR 439

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224107237|ref|XP_002314418.1| predicted protein [Populus trichocarpa] gi|222863458|gb|EEF00589.1| predicted protein [Populus trichocarpa]

 Score =  749 bits (1933), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/445 (84%), Positives = 397/445 (89%), Gaps = 6/445 (1%)

Query: 1   MQLLNAVMATRMLTSTMKNGGGPSSEGIPFGSVWWFVYAGISCVLVLFAGIMSGLTLGLM 60
           MQLLNAVMATRMLT     GG  + + IPFGS  WF YAGISC LVLFAGIMSGLTLGLM
Sbjct: 1   MQLLNAVMATRMLTEL---GGQSNGDEIPFGSFSWFAYAGISCFLVLFAGIMSGLTLGLM 57

Query: 61  SLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCNAASMEALPIYLDKLFNQ 120
           SLGLV+LEILQRSGT +EKKQAAAI PVVQKQHQLLVTLLLCNAASMEALPIYLDKLFNQ
Sbjct: 58  SLGLVDLEILQRSGTSTEKKQAAAILPVVQKQHQLLVTLLLCNAASMEALPIYLDKLFNQ 117

Query: 121 YVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVL 180
           YVAIILSVTFVL FGEVIPQ+ICTRYGLAVGANFVWLVRILMI+CYPI+YPIGK+LD VL
Sbjct: 118 YVAIILSVTFVLAFGEVIPQSICTRYGLAVGANFVWLVRILMILCYPISYPIGKVLDCVL 177

Query: 181 GHNEALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFS 240
           GHNEALFRRAQLKALV+IH  EAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFS
Sbjct: 178 GHNEALFRRAQLKALVSIHGLEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFS 237

Query: 241 LDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRR 300
           LDVNSKLDWEAMGK+LARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRR
Sbjct: 238 LDVNSKLDWEAMGKVLARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRR 297

Query: 301 IPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTA 360
           IPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSK LPP  DGK+ + N+  G +  LT 
Sbjct: 298 IPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKALPPTIDGKEHEGNKVTGKESQLTT 357

Query: 361 PLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITL 420
           PLLS  +EK +SVVVD+DR       +R  S QR+D++  G+   SEDIEDGEVIGIITL
Sbjct: 358 PLLSMPNEKLDSVVVDMDR---VSRPSRQPSLQRNDASIKGMTLLSEDIEDGEVIGIITL 414

Query: 421 EDVFEELLQEEIVDETDEYVDVHKR 445
           EDVFEELLQEEIVDETDEYVDVHKR
Sbjct: 415 EDVFEELLQEEIVDETDEYVDVHKR 439

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449465210|ref|XP_004150321.1| PREDICTED: DUF21 domain-containing protein At4g14240-like [Cucumis sativus]

 Score =  747 bits (1929), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/447 (83%), Positives = 399/447 (89%), Gaps = 5/447 (1%)

Query: 1   MQLLNAVMATRMLTSTMKNGGGPSSEG-IPFGSVWWFVYAGISCVLVLFAGIMSGLTLGL 59
           M  +NAVM TRMLT   +N G  S  G IPFGS+ WF YAGISCV VLFAGIMSGLTLGL
Sbjct: 1   MHFINAVMLTRMLT---RNSGLQSDAGEIPFGSLLWFTYAGISCVFVLFAGIMSGLTLGL 57

Query: 60  MSLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCNAASMEALPIYLDKLFN 119
           MSLGLV+LEILQRSGT  EKKQAAAI PVVQKQHQLLVTLLLCNA +MEALPIYLDKLFN
Sbjct: 58  MSLGLVDLEILQRSGTAVEKKQAAAILPVVQKQHQLLVTLLLCNAVAMEALPIYLDKLFN 117

Query: 120 QYVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWV 179
           QYVAIILSVTFVL FGEVIPQAICTRYGLAVGANFV LVRILM+ICYPIAYPIGKILD +
Sbjct: 118 QYVAIILSVTFVLAFGEVIPQAICTRYGLAVGANFVCLVRILMVICYPIAYPIGKILDCL 177

Query: 180 LGHNEALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTF 239
           LGHNEALFRRAQLKALV+IHS EAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTF
Sbjct: 178 LGHNEALFRRAQLKALVSIHSLEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTF 237

Query: 240 SLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIR 299
           SLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIR
Sbjct: 238 SLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIR 297

Query: 300 RIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLT 359
           RIPRVPSDMPLYDILNEFQKGSSHMAAVVK KGK+K LPP  DG++ + N+A G +  LT
Sbjct: 298 RIPRVPSDMPLYDILNEFQKGSSHMAAVVKVKGKNKALPPTLDGEEFEDNKASGTESQLT 357

Query: 360 APLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRSD-STTNGLIYASEDIEDGEVIGII 418
           APLL K DE ++SVV+D+DR   +  ++R  S +R+D S+ NG  ++SEDIEDGEVIGII
Sbjct: 358 APLLRKHDENSDSVVLDIDRTSKTSVISRQPSYRRNDASSINGPSHSSEDIEDGEVIGII 417

Query: 419 TLEDVFEELLQEEIVDETDEYVDVHKR 445
           TLEDVFEELLQEEIVDETDEYVDVHKR
Sbjct: 418 TLEDVFEELLQEEIVDETDEYVDVHKR 444

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449528085|ref|XP_004171037.1| PREDICTED: DUF21 domain-containing protein At4g14240-like [Cucumis sativus]

 Score =  747 bits (1928), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/447 (83%), Positives = 399/447 (89%), Gaps = 5/447 (1%)

Query: 1   MQLLNAVMATRMLTSTMKNGGGPSSEG-IPFGSVWWFVYAGISCVLVLFAGIMSGLTLGL 59
           M  +NAVM TRMLT   +N G  S  G IPFGS+ WF YAGISCV VLFAGIMSGLTLGL
Sbjct: 1   MHFINAVMLTRMLT---RNSGLQSDAGEIPFGSLLWFTYAGISCVFVLFAGIMSGLTLGL 57

Query: 60  MSLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCNAASMEALPIYLDKLFN 119
           MSLGLV+LEILQRSGT  EKKQAAAI PVVQKQHQLLVTLLLCNA +MEALPIYLDKLFN
Sbjct: 58  MSLGLVDLEILQRSGTAVEKKQAAAILPVVQKQHQLLVTLLLCNAVAMEALPIYLDKLFN 117

Query: 120 QYVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWV 179
           QYVAIILSVTFVL FGEVIPQAICTRYGLAVGANFV LVRILM+ICYPIAYPIGKILD +
Sbjct: 118 QYVAIILSVTFVLAFGEVIPQAICTRYGLAVGANFVCLVRILMVICYPIAYPIGKILDCL 177

Query: 180 LGHNEALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTF 239
           LGHNEALFRRAQLKALV+IHS EAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTF
Sbjct: 178 LGHNEALFRRAQLKALVSIHSLEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTF 237

Query: 240 SLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIR 299
           SLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIR
Sbjct: 238 SLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIR 297

Query: 300 RIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLT 359
           RIPRVPSDMPLYDILNEFQKGSSHMAAVVK KGK+K LPP  DG++ + N+A G +  LT
Sbjct: 298 RIPRVPSDMPLYDILNEFQKGSSHMAAVVKVKGKNKALPPTLDGEEFEDNKASGTESQLT 357

Query: 360 APLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRSD-STTNGLIYASEDIEDGEVIGII 418
           APLL K DE ++SVV+D+DR   +  ++R  S +R+D S+ NG  ++SEDIEDGEVIGII
Sbjct: 358 APLLRKHDENSDSVVLDIDRTSKTSVISRQPSYRRNDASSINGPSHSSEDIEDGEVIGII 417

Query: 419 TLEDVFEELLQEEIVDETDEYVDVHKR 445
           TLEDVFEELLQEEIVDETDEYVDVHKR
Sbjct: 418 TLEDVFEELLQEEIVDETDEYVDVHKR 444

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557879|ref|XP_003547237.1| PREDICTED: DUF21 domain-containing protein At4g14240-like [Glycine max]

 Score =  746 bits (1926), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/445 (83%), Positives = 402/445 (90%), Gaps = 6/445 (1%)

Query: 1   MQLLNAVMATRMLTSTMKNGGGPSSEGIPFGSVWWFVYAGISCVLVLFAGIMSGLTLGLM 60
           M +++A+M TR+LT      G P  EGIPFGSVWWFVYAGIS  LV+FAGIMSGLTLGLM
Sbjct: 1   MNVVSALMVTRLLTRNQL--GAP--EGIPFGSVWWFVYAGISFFLVIFAGIMSGLTLGLM 56

Query: 61  SLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCNAASMEALPIYLDKLFNQ 120
           SLGLV+LEILQRSG+PSEKKQAA I PVVQKQHQLLVTLLLCNAA+MEALPIYLDK+FNQ
Sbjct: 57  SLGLVDLEILQRSGSPSEKKQAAVILPVVQKQHQLLVTLLLCNAAAMEALPIYLDKMFNQ 116

Query: 121 YVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVL 180
           YVAIILSVTFVLFFGEVIPQAIC+RYGLAVGANFVWLVRILMIICYP+AYPIGK+LD +L
Sbjct: 117 YVAIILSVTFVLFFGEVIPQAICSRYGLAVGANFVWLVRILMIICYPVAYPIGKVLDCLL 176

Query: 181 GHNEALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFS 240
           GHNEALFRRAQLK LV+IHSQEAGKGGELTHDETTIISGALDLTEKTAE AMTPIESTFS
Sbjct: 177 GHNEALFRRAQLKVLVSIHSQEAGKGGELTHDETTIISGALDLTEKTAEAAMTPIESTFS 236

Query: 241 LDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRR 300
           LDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRR
Sbjct: 237 LDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRR 296

Query: 301 IPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTA 360
           IPRVPSDMPLYDILNEFQKGSSHMAAVV+A+GK KT+P  TD +  + N+  GGD  LTA
Sbjct: 297 IPRVPSDMPLYDILNEFQKGSSHMAAVVRARGKGKTIPETTDEETYEENKGVGGDSQLTA 356

Query: 361 PLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITL 420
           PLL KQ+EK+ES +VD+D+   S S+N+ +  QRSDST NG    S++IEDGEVIGIITL
Sbjct: 357 PLLQKQNEKSESFIVDIDKFSRSPSINKSTGLQRSDSTRNGSF--SDNIEDGEVIGIITL 414

Query: 421 EDVFEELLQEEIVDETDEYVDVHKR 445
           EDVFEELLQEEIVDETDEYVDVHKR
Sbjct: 415 EDVFEELLQEEIVDETDEYVDVHKR 439

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564538|ref|XP_003550510.1| PREDICTED: DUF21 domain-containing protein At4g14240-like [Glycine max]

 Score =  741 bits (1912), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/447 (81%), Positives = 399/447 (89%), Gaps = 7/447 (1%)

Query: 1   MQLLNAVMATRMLTSTMKNGGGP--SSEGIPFGSVWWFVYAGISCVLVLFAGIMSGLTLG 58
           M+ ++A+M  RMLT   ++   P   SE IPF SVWWFVYAGISC LVLFAGIMSGLTLG
Sbjct: 1   MRAVSALMVARMLT---RDHSLPVLCSESIPFRSVWWFVYAGISCFLVLFAGIMSGLTLG 57

Query: 59  LMSLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCNAASMEALPIYLDKLF 118
           LMSLGLV+LEIL+RSG+P EK QAA I PVV+KQHQLLVTLLLCNA +MEALP+YLDKLF
Sbjct: 58  LMSLGLVDLEILERSGSPVEKMQAAVILPVVKKQHQLLVTLLLCNAVAMEALPLYLDKLF 117

Query: 119 NQYVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDW 178
           NQ+VAIILSVTFVLFFGEVIPQAIC+RYGLAVGANF WLVRILMIICYP++YP+GK+LD 
Sbjct: 118 NQFVAIILSVTFVLFFGEVIPQAICSRYGLAVGANFAWLVRILMIICYPVSYPVGKVLDH 177

Query: 179 VLGHNEALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIEST 238
           +LGHNEALFRRAQLKALV+IHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIEST
Sbjct: 178 LLGHNEALFRRAQLKALVSIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIEST 237

Query: 239 FSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSI 298
           FSLDVNSKLDWEAMGK+LARGHSRVPVYSGNP+NIIGLLLVKSLLTVRPETETPVSAVSI
Sbjct: 238 FSLDVNSKLDWEAMGKVLARGHSRVPVYSGNPRNIIGLLLVKSLLTVRPETETPVSAVSI 297

Query: 299 RRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDL 358
           RRIPRVPSDMPLYDILNEFQKGSSHMAAVVKA+GK K  P + D +K + NE+ GGD  L
Sbjct: 298 RRIPRVPSDMPLYDILNEFQKGSSHMAAVVKARGKGKETPQIIDEEKNEENESIGGDSQL 357

Query: 359 TAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGII 418
           T PLL KQD K+ SVVVD+ +P    S+N+LS  QRSD TTNG   +SE+IEDGEVIGII
Sbjct: 358 TTPLLQKQDAKSGSVVVDIAKPSKPSSINKLSGLQRSDGTTNG--PSSENIEDGEVIGII 415

Query: 419 TLEDVFEELLQEEIVDETDEYVDVHKR 445
           TLEDVFEELLQEEIVDETDEYVDVHKR
Sbjct: 416 TLEDVFEELLQEEIVDETDEYVDVHKR 442

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521943|ref|XP_003529609.1| PREDICTED: DUF21 domain-containing protein At4g14240-like [Glycine max]

 Score =  738 bits (1906), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/447 (80%), Positives = 400/447 (89%), Gaps = 7/447 (1%)

Query: 1   MQLLNAVMATRMLTSTMKNGGGP--SSEGIPFGSVWWFVYAGISCVLVLFAGIMSGLTLG 58
           M+ ++A+M  RMLT   ++   P   +E IPFGSVWWF YAG+SC LVLFAGIMSGLTLG
Sbjct: 1   MRAVSALMVARMLT---RDHSLPVLGNESIPFGSVWWFAYAGVSCFLVLFAGIMSGLTLG 57

Query: 59  LMSLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCNAASMEALPIYLDKLF 118
           LMSLGLV+LEIL+RSG+P+EK QAA I PVV+KQHQLLVTLLLCNA +MEALP+YLDKLF
Sbjct: 58  LMSLGLVDLEILERSGSPAEKMQAAIILPVVKKQHQLLVTLLLCNAVAMEALPLYLDKLF 117

Query: 119 NQYVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDW 178
           NQ+VAIILSVTFVLFFGEVIPQAIC+RYGLAVGANF WLVRILMIICYP++YP+GK+LD 
Sbjct: 118 NQFVAIILSVTFVLFFGEVIPQAICSRYGLAVGANFAWLVRILMIICYPVSYPVGKVLDH 177

Query: 179 VLGHNEALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIEST 238
           +LGHNEALFRRAQLKALV+IH QEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIEST
Sbjct: 178 LLGHNEALFRRAQLKALVSIHGQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIEST 237

Query: 239 FSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSI 298
           FSLDVNSKLDWEAMGK+LARGHSRVPVYSGNP+NIIGLLLVKSLLTVRPETETPVSAVSI
Sbjct: 238 FSLDVNSKLDWEAMGKVLARGHSRVPVYSGNPRNIIGLLLVKSLLTVRPETETPVSAVSI 297

Query: 299 RRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDL 358
           RRIPRVPSDMPLYDILNEFQKGSSHMAAVVKA+GK K  P + D +K + N++ GGD  L
Sbjct: 298 RRIPRVPSDMPLYDILNEFQKGSSHMAAVVKARGKGKETPQIIDEEKNEENKSIGGDSQL 357

Query: 359 TAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGII 418
           T PLL KQD K+ SVVVD+ +P    S+N+LS  QRSDSTTNG   +SE+IEDGEVIGII
Sbjct: 358 TTPLLQKQDAKSGSVVVDIVKPSKPSSINKLSVLQRSDSTTNG--PSSENIEDGEVIGII 415

Query: 419 TLEDVFEELLQEEIVDETDEYVDVHKR 445
           TLEDVFEELLQEEIVDETDEYVDVHKR
Sbjct: 416 TLEDVFEELLQEEIVDETDEYVDVHKR 442

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432520|ref|XP_002280174.1| PREDICTED: DUF21 domain-containing protein At4g14240 [Vitis vinifera]

 Score =  729 bits (1882), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/446 (81%), Positives = 390/446 (87%), Gaps = 7/446 (1%)

Query: 1   MQLLNAVMATRMLTSTMKNGGGPSSEG--IPFGSVWWFVYAGISCVLVLFAGIMSGLTLG 58
           MQL+NAV   RM     +N G  S  G  I FGS+W+F+Y GI C LVLFAGIMSGLTLG
Sbjct: 1   MQLINAVAIARM---AARNLGAESLGGGDIAFGSLWFFIYVGICCFLVLFAGIMSGLTLG 57

Query: 59  LMSLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCNAASMEALPIYLDKLF 118
           LMSLG V+LEILQRSGT  EKKQAAAI PVVQKQHQLLVTLLLCNA SMEALP+YLDKLF
Sbjct: 58  LMSLGRVDLEILQRSGTSDEKKQAAAILPVVQKQHQLLVTLLLCNACSMEALPLYLDKLF 117

Query: 119 NQYVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDW 178
           NQ+VAI+LSVTFVL FGEVIPQAIC+RYGL+VGANFVWLVRILMIICYPIAYPIGKILDW
Sbjct: 118 NQFVAIVLSVTFVLAFGEVIPQAICSRYGLSVGANFVWLVRILMIICYPIAYPIGKILDW 177

Query: 179 VLGHNEALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIEST 238
           VLGHNEALFRRAQLKALV+IH QEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIEST
Sbjct: 178 VLGHNEALFRRAQLKALVSIHGQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIEST 237

Query: 239 FSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSI 298
           FSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKN+IGLLLVKSLLTVR ETETPVSAVSI
Sbjct: 238 FSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNVIGLLLVKSLLTVRAETETPVSAVSI 297

Query: 299 RRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDL 358
           RRIPRVP+DMPLYDILNEFQKGSSHMAAVVK KG++K  P + DGK  + N+  G D  L
Sbjct: 298 RRIPRVPADMPLYDILNEFQKGSSHMAAVVKPKGRNKNAPQVMDGKITEENKITGADSQL 357

Query: 359 TAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGII 418
           T PLLSKQDEK ES+VVD+++      +NR   SQ SD+ TNGL   SEDIEDGEVIGII
Sbjct: 358 TTPLLSKQDEKLESIVVDIEKASRPTIINR--QSQHSDAATNGLPRLSEDIEDGEVIGII 415

Query: 419 TLEDVFEELLQEEIVDETDEYVDVHK 444
           TLEDVFEELLQEEIVDETDE+VDVHK
Sbjct: 416 TLEDVFEELLQEEIVDETDEFVDVHK 441

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225436964|ref|XP_002276672.1| PREDICTED: putative DUF21 domain-containing protein At1g03270 [Vitis vinifera]

 Score =  701 bits (1808), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/448 (77%), Positives = 390/448 (87%), Gaps = 9/448 (2%)

Query: 1   MQLLNAVMATRMLTS---TMKNGGGPSSEGIPFGSVWWFVYAGISCVLVLFAGIMSGLTL 57
           M LLNA+    M T+    ++      +E I FGS+WWFVYAG+SC LVLFAGIMSGLTL
Sbjct: 1   MSLLNALTLGSMPTTGEFVLR------TEDIEFGSLWWFVYAGVSCFLVLFAGIMSGLTL 54

Query: 58  GLMSLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCNAASMEALPIYLDKL 117
           GLMSLGLVELEILQRSGT +EKKQAAAI PVVQKQHQLLVTLLLCNA +MEALPIYLDK+
Sbjct: 55  GLMSLGLVELEILQRSGTSAEKKQAAAILPVVQKQHQLLVTLLLCNACAMEALPIYLDKI 114

Query: 118 FNQYVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILD 177
           F+ +VAI+LSVTFVL FGE+IPQAICTRYGL+VGANFVWLVRILMIICYPIA+PIGK+LD
Sbjct: 115 FHPFVAILLSVTFVLAFGEIIPQAICTRYGLSVGANFVWLVRILMIICYPIAFPIGKVLD 174

Query: 178 WVLGHNEALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIES 237
            VLGHN+ALFRRAQLKALV+IH QEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIES
Sbjct: 175 AVLGHNDALFRRAQLKALVSIHGQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIES 234

Query: 238 TFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVS 297
           TFSLDVNSKLDWEA+GKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR ETETPVSAVS
Sbjct: 235 TFSLDVNSKLDWEAIGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRAETETPVSAVS 294

Query: 298 IRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCD 357
           IR+IPRVP+DMPLYDILNEFQKGSSHMAAVVK KGK+K   P  DG++ + N+   G+  
Sbjct: 295 IRKIPRVPADMPLYDILNEFQKGSSHMAAVVKVKGKNKNPLPKGDGERFEENKVANGNSQ 354

Query: 358 LTAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGI 417
            T PLL+  ++K+E+VVVD+D+     + N+ + SQ++ +TTN L +  EDIEDGEVIGI
Sbjct: 355 YTTPLLANDNDKSENVVVDIDKVPKPTNTNKQTPSQQNGATTNSLPHLPEDIEDGEVIGI 414

Query: 418 ITLEDVFEELLQEEIVDETDEYVDVHKR 445
           ITLEDVFEELLQEEIVDETD YVDVHKR
Sbjct: 415 ITLEDVFEELLQEEIVDETDVYVDVHKR 442

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	445
TAIR|locus:2129540	494	AT4G14240 "AT4G14240" [Arabido	0.977	0.880	0.716	1.6e-157
TAIR|locus:2129535	495	AT4G14230 "AT4G14230" [Arabido	0.979	0.880	0.669	2.8e-146
TAIR|locus:2014520	499	AT1G03270 "AT1G03270" [Arabido	0.791	0.705	0.719	1.1e-142
TAIR|locus:2134273	424	AT4G33700 "AT4G33700" [Arabido	0.683	0.716	0.573	5.4e-96
TAIR|locus:2055155	423	AT2G14520 "AT2G14520" [Arabido	0.712	0.749	0.545	3.4e-94
TAIR|locus:2149659	500	AT5G52790 "AT5G52790" [Arabido	0.795	0.708	0.460	5.5e-92
TAIR|locus:2203746	527	AT1G47330 "AT1G47330" [Arabido	0.714	0.603	0.501	3e-89
ASPGD|ASPL0000049101	716	AN1876 [Emericella nidulans (t	0.748	0.465	0.358	1.4e-62
SGD|S000005421	706	MAM3 "Protein required for nor	0.662	0.417	0.385	4.2e-59
POMBASE|SPCC4B3.03c	679	SPCC4B3.03c "mitochondrial mor	0.701	0.459	0.359	1.6e-57

TAIR|locus:2129540 AT4G14240 "AT4G14240" [Arabidopsis thaliana (taxid:3702)]

 Score = 1535 (545.4 bits), Expect = 1.6e-157, P = 1.6e-157
 Identities = 319/445 (71%), Positives = 347/445 (77%)

Query:     1 MQLLNAVMATRMLTSTMKNGGGPSSEGIPFGSVWWFVYAGISCVLVLFAXXXXXXXXXXX 60
             M L+NAV A R+L+   ++ G    E IPFGS  W  YAGISC LVLFA           
Sbjct:     1 MHLINAVAAARILSGIGQSNGNNGGEAIPFGSFEWITYAGISCFLVLFAGIMSGLTLGLM 60

Query:    61 XXXXXXXXILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCNAASMEALPIYLDKLFNQ 120
                     ILQRSGTP+EKKQAAAIFPVVQKQHQLLVTLLLCNA +ME LPIYLDKLFN+
Sbjct:    61 SLGLVELEILQRSGTPNEKKQAAAIFPVVQKQHQLLVTLLLCNAMAMEGLPIYLDKLFNE 120

Query:   121 YVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVL 180
             YVAIILSVTFVL FGEVIPQAICTRYGLAVGANFVWLVRILM +CYPIA+PIGKILD VL
Sbjct:   121 YVAIILSVTFVLAFGEVIPQAICTRYGLAVGANFVWLVRILMTLCYPIAFPIGKILDLVL 180

Query:   181 GHNEALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFS 240
             GHN+ALFRRAQLKALV+IHSQEAGKGGELTHDETTIISGALDLTEKTA+EAMTPIESTFS
Sbjct:   181 GHNDALFRRAQLKALVSIHSQEAGKGGELTHDETTIISGALDLTEKTAQEAMTPIESTFS 240

Query:   241 LDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRR 300
             LDVNSKLDWEAMGKILARGHSRVPVYSGNPKN+IGLLLVKSLLTVRPETET VSAV IRR
Sbjct:   241 LDVNSKLDWEAMGKILARGHSRVPVYSGNPKNVIGLLLVKSLLTVRPETETLVSAVCIRR 300

Query:   301 IPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTA 360
             IPRVP+DMPLYDILNEFQKGSSHMAAVVK KGKSK +PP T  ++   +  +  D DLTA
Sbjct:   301 IPRVPADMPLYDILNEFQKGSSHMAAVVKVKGKSK-VPPSTLLEE---HTDESNDSDLTA 356

Query:   361 PLLSKQDEKTESVVVDVDRPXXXXXXXXXXXXXXXXXXXXXLIYASXXXXXXXXXXXXTL 420
             PLL K++   ++V+V +D+                        + S            TL
Sbjct:   357 PLLLKREGNHDNVIVTIDKANGQSFFQNNESGPHGFS------HTSEAIEDGEVIGIITL 410

Query:   421 EDVFEELLQEEIVDETDEYVDVHKR 445
             EDVFEELLQEEIVDETDEYVDVHKR
Sbjct:   411 EDVFEELLQEEIVDETDEYVDVHKR 435

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2129535 AT4G14230 "AT4G14230" [Arabidopsis thaliana (taxid:3702)]

 Score = 1429 (508.1 bits), Expect = 2.8e-146, P = 2.8e-146
 Identities = 298/445 (66%), Positives = 330/445 (74%)

Query:     1 MQLLNAVMATRMLTSTMKNGGGPSSEGIPFGSVWWFVYAGISCVLVLFAXXXXXXXXXXX 60
             M  +NAV+A RML   +       SE IPFGS+ W  YAGISC LVLFA           
Sbjct:     1 MHPINAVVAARMLAG-ISQSNALQSEAIPFGSLEWITYAGISCFLVLFAGIMSGLTLGLM 59

Query:    61 XXXXXXXXILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCNAASMEALPIYLDKLFNQ 120
                     ILQRSGTP EKKQ+AAIFPVVQKQHQLLVTLLL NA +ME LPIYLDK+FN+
Sbjct:    60 SLGLVELEILQRSGTPKEKKQSAAIFPVVQKQHQLLVTLLLFNALAMEGLPIYLDKIFNE 119

Query:   121 YVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVL 180
             YVAIILSVTFVLF GEVIPQAICTRYGLAVGAN VWLVRILM++ YPI++PI K+LDWVL
Sbjct:   120 YVAIILSVTFVLFVGEVIPQAICTRYGLAVGANLVWLVRILMVLSYPISFPIAKMLDWVL 179

Query:   181 GHNEALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFS 240
             GHN+ LFRRAQLKALV+IH + AGKGGELTHDETTIISGALDLTEKTA+EAMTPIESTFS
Sbjct:   180 GHNDPLFRRAQLKALVSIHGEAAGKGGELTHDETTIISGALDLTEKTAQEAMTPIESTFS 239

Query:   241 LDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRR 300
             LDVNSKLD EAM KI ARGHSRVPVYS NPKN+IGLLLVKSLLTVRPET T VSAV IRR
Sbjct:   240 LDVNSKLDREAMDKIQARGHSRVPVYSDNPKNVIGLLLVKSLLTVRPETGTLVSAVGIRR 299

Query:   301 IPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTA 360
             IPRVP++MPLYDILNEFQKGSSHMAAVVK KGKSK  P     +    +     + +LTA
Sbjct:   300 IPRVPANMPLYDILNEFQKGSSHMAAVVKVKGKSKGHPSTLHEENSGESNVSSNNSELTA 359

Query:   361 PLLSKQDEKTESVVVDVDRPXXXXXXXXXXXXXXXXXXXXXLIYASXXXXXXXXXXXXTL 420
             PLL K++   +SV+V +D+                        + S            TL
Sbjct:   360 PLLLKREGNHDSVIVRIDKANGQSFISEAGRQGFS--------HTSEEIEDGDVIGIITL 411

Query:   421 EDVFEELLQEEIVDETDEYVDVHKR 445
             EDVFEELLQEEIVDETDEY+DVHKR
Sbjct:   412 EDVFEELLQEEIVDETDEYIDVHKR 436

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

TAIR|locus:2014520 AT1G03270 "AT1G03270" [Arabidopsis thaliana (taxid:3702)]

 Score = 1293 (460.2 bits), Expect = 1.1e-142, Sum P(2) = 1.1e-142
 Identities = 257/357 (71%), Positives = 296/357 (82%)

Query:    25 SEGIPFGSVWWFVYAGISCVLVLFAXXXXXXXXXXXXXXXXXXXILQRSGTPSEKKQAAA 84
             +E I FGS WWFV  G++C LVLFA                   ILQ+SG+ +EKKQAAA
Sbjct:    23 AEDIRFGSPWWFVVVGVACFLVLFAGIMSGLTLGLMSLGLVELEILQQSGSSAEKKQAAA 82

Query:    85 IFPVVQKQHQLLVTLLLCNAASMEALPIYLDKLFNQYVAIILSVTFVLFFGEVIPQAICT 144
             I PVV+KQHQLLVTLLLCNAA+MEALPI LDK+F+ +VA++LSVTFVL FGE+IPQAIC+
Sbjct:    83 ILPVVKKQHQLLVTLLLCNAAAMEALPICLDKIFHPFVAVLLSVTFVLAFGEIIPQAICS 142

Query:   145 RYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVLGHNEALFRRAQLKALVTIHSQEAG 204
             RYGLAVGANF+WLVRILMIICYPIAYPIGK+LD V+GHN+ LFRRAQLKALV+IHSQEAG
Sbjct:   143 RYGLAVGANFLWLVRILMIICYPIAYPIGKVLDAVIGHNDTLFRRAQLKALVSIHSQEAG 202

Query:   205 KGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVP 264
             KGGELTH+ET IISGALDL++KTAEEAMTPIESTFSLDVN+KLDWE +GKIL+RGHSR+P
Sbjct:   203 KGGELTHEETMIISGALDLSQKTAEEAMTPIESTFSLDVNTKLDWETIGKILSRGHSRIP 262

Query:   265 VYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHM 324
             VY GNPKNIIGLLLVKSLLTVR ETE PVS+VSIR+IPRVPSDMPLYDILNEFQKGSSHM
Sbjct:   263 VYLGNPKNIIGLLLVKSLLTVRAETEAPVSSVSIRKIPRVPSDMPLYDILNEFQKGSSHM 322

Query:   325 AAVVKAKGKSK--TLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVDR 379
             AAVVK K K K   +  +++G+ PK N       +LTAPLL  +   +  VVVD+D+
Sbjct:   323 AAVVKVKDKDKKNNMQLLSNGETPKENMKFYQSSNLTAPLLKHE---SHDVVVDIDK 376

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2134273 AT4G33700 "AT4G33700" [Arabidopsis thaliana (taxid:3702)]

 Score = 891 (318.7 bits), Expect = 5.4e-96, Sum P(2) = 5.4e-96
 Identities = 175/305 (57%), Positives = 219/305 (71%)

Query:    35 WFVYAGISCVLVLFAXXXXXXXXXXXXXXXXXXXILQRSGTPSEKKQAAAIFPVVQKQHQ 94
             +F++  +   LVLFA                   +L +SGTP  +K AA I PVV+ QH 
Sbjct:    12 FFIHIAVIVFLVLFAGLMSGLTLGLMSLSLVDLEVLAKSGTPEHRKYAAKILPVVKNQHL 71

Query:    95 LLVTLLLCNAASMEALPIYLDKLFNQYVAIILSVTFVLFFGEVIPQAICTRYGLAVGANF 154
             LLVTLL+CNAA+ME LPI+LD L   + AI++SVT +L FGE+IPQ+IC+RYGLA+GA  
Sbjct:    72 LLVTLLICNAAAMETLPIFLDGLVTAWGAILISVTLILLFGEIIPQSICSRYGLAIGATV 131

Query:   155 VWLVRILMIICYPIAYPIGKILDWVLGHNEA-LFRRAQLKALVTIHSQEAGKGGELTHDE 213
                VR+L+ IC P+A+PI K+LD++LGH  A LFRRA+LK LV  H  EAGKGGELTHDE
Sbjct:   132 APFVRVLVFICLPVAWPISKLLDFLLGHRRAALFRRAELKTLVDFHGNEAGKGGELTHDE 191

Query:   214 TTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNI 273
             TTII+GAL+L+EK  ++AMTPI   F +D+N+KLD + M  IL +GHSRVPVY   P NI
Sbjct:   192 TTIIAGALELSEKMVKDAMTPISDIFVIDINAKLDRDLMNLILEKGHSRVPVYYEQPTNI 251

Query:   274 IGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGK 333
             IGL+LVK+LLT+ P+ E PV  V+IRRIPRVP  +PLYDILNEFQKG SHMA VV+   K
Sbjct:   252 IGLVLVKNLLTINPDEEIPVKNVTIRRIPRVPEILPLYDILNEFQKGLSHMAVVVRQCDK 311

Query:   334 SKTLP 338
                LP
Sbjct:   312 IHPLP 316

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2055155 AT2G14520 "AT2G14520" [Arabidopsis thaliana (taxid:3702)]

 Score = 874 (312.7 bits), Expect = 3.4e-94, Sum P(2) = 3.4e-94
 Identities = 174/319 (54%), Positives = 225/319 (70%)

Query:    35 WFVYAGISCVLVLFAXXXXXXXXXXXXXXXXXXXILQRSGTPSEKKQAAAIFPVVQKQHQ 94
             +F++  +  +LVLFA                   +L +SGTP ++  AA I PVV+ QH 
Sbjct:    12 FFIHIAVIVLLVLFAGLMSGLTLGLMSMSLVDLEVLAKSGTPRDRIHAAKILPVVKNQHL 71

Query:    95 LLVTLLLCNAASMEALPIYLDKLFNQYVAIILSVTFVLFFGEVIPQAICTRYGLAVGANF 154
             LL TLL+CNAA+MEALPI+LD L   + AI++SVT +L FGE+IPQ++C+R+GLA+GA  
Sbjct:    72 LLCTLLICNAAAMEALPIFLDALVTAWGAILISVTLILLFGEIIPQSVCSRHGLAIGATV 131

Query:   155 VWLVRILMIICYPIAYPIGKILDWVLGHNE-ALFRRAQLKALVTIHSQEAGKGGELTHDE 213
                VR+L+ IC P+A+PI K+LD++LGH   ALFRRA+LK LV +H  EAGKGGELTHDE
Sbjct:   132 APFVRVLVWICLPVAWPISKLLDFLLGHGRVALFRRAELKTLVDLHGNEAGKGGELTHDE 191

Query:   214 TTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNI 273
             TTII+GAL+L+EK A++AMTPI  TF +D+N+KLD + M  IL +GHSRVPVY     NI
Sbjct:   192 TTIIAGALELSEKMAKDAMTPISDTFVIDINAKLDRDLMNLILDKGHSRVPVYYEQRTNI 251

Query:   274 IGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGK 333
             IGL+LVK+LLT+ P+ E  V  V+IRRIPRVP  +PLYDILNEFQKG SHMA VV+   K
Sbjct:   252 IGLVLVKNLLTINPDEEIQVKNVTIRRIPRVPETLPLYDILNEFQKGHSHMAVVVRQCDK 311

Query:   334 SKTLPPMTDGKKPKLNEAK 352
                L    D     +NE +
Sbjct:   312 IHPLQS-NDAANETVNEVR 329

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2149659 AT5G52790 "AT5G52790" [Arabidopsis thaliana (taxid:3702)]

 Score = 822 (294.4 bits), Expect = 5.5e-92, Sum P(2) = 5.5e-92
 Identities = 164/356 (46%), Positives = 238/356 (66%)

Query:    24 SSEGIPFGSVWWFVYAGISCVLVLFAXXXXXXXXXXXXXXXXXXXILQRSGTPSEKKQAA 83
             ++  +P     ++VY  +   LV+FA                   ++ ++G P ++K A 
Sbjct:     2 AANDVPCCETMFWVYLLVCVALVVFAGLMSGLTLGLMSLSIVELEVMIKAGEPHDRKNAE 61

Query:    84 AIFPVVQKQHQLLVTLLLCNAASMEALPIYLDKLFNQYVAIILSVTFVLFFGEVIPQAIC 143
              I P+V+ QH LL TLL+ NA +MEALPI++D L   + AI++SVT +L FGE+IPQA+C
Sbjct:    62 KILPLVKNQHLLLCTLLIGNALAMEALPIFVDSLLPAWGAILISVTLILAFGEIIPQAVC 121

Query:   144 TRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVLG-HNEALFRRAQLKALVTIHSQE 202
             +RYGL++GA   +LVR+++I+ +P++YPI K+LD +LG  +  L  RA+LK+LV +H  E
Sbjct:   122 SRYGLSIGAKLSFLVRLIIIVFFPLSYPISKLLDLLLGKRHSTLLGRAELKSLVYMHGNE 181

Query:   203 AGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSR 262
             AGKGGELTHDETTIISGALD+++K+A++AMTP+   FSLD+N KLD + MG I + GHSR
Sbjct:   182 AGKGGELTHDETTIISGALDMSQKSAKDAMTPVSQIFSLDINFKLDEKTMGLIASAGHSR 241

Query:   263 VPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSS 322
             +P+YS NP  IIG +LVK+L+ VRPE ET +  + IRR+P+V  ++PLYDILN FQ G S
Sbjct:   242 IPIYSVNPNVIIGFILVKNLIKVRPEDETSIRDLPIRRMPKVDLNLPLYDILNIFQTGRS 301

Query:   323 HMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVD 378
             HMAAVV  K  + T  P+ + K    +  K  +  L+ P L+  +   +S +  +D
Sbjct:   302 HMAAVVGTKNHTNTNTPVHE-KSINGSPNKDANVFLSIPALNSSETSHQSPIRYID 356

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2203746 AT1G47330 "AT1G47330" [Arabidopsis thaliana (taxid:3702)]

 Score = 795 (284.9 bits), Expect = 3.0e-89, Sum P(2) = 3.0e-89
 Identities = 160/319 (50%), Positives = 215/319 (67%)

Query:    25 SEGIPFGSVWWFVYAGISCVLVLFAXXXXXXXXXXXXXXXXXXXILQRSGTPSEKKQAAA 84
             S  IP     + +Y  I   LV FA                   +L +SG P ++  A  
Sbjct:     2 SSDIPCCGTTFSLYVVIIIALVAFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRINAGK 61

Query:    85 IFPVVQKQHQLLVTLLLCNAASMEALPIYLDKLFNQYVAIILSVTFVLFFGEVIPQAICT 144
             IFPVV+ QH LL TLL+ N+ +MEALPI+LDK+   ++AI+LSVT +L FGE++PQA+CT
Sbjct:    62 IFPVVKNQHLLLCTLLIGNSMAMEALPIFLDKIVPPWLAILLSVTLILVFGEIMPQAVCT 121

Query:   145 RYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVLGHNEA-LFRRAQLKALVTIHSQEA 203
             RYGL VGA     VR+L+++ +PI+YPI K+LDW+LG     L RRA+LK  V  H  EA
Sbjct:   122 RYGLKVGAIMAPFVRVLLVLFFPISYPISKVLDWMLGKGHGVLLRRAELKTFVNFHGNEA 181

Query:   204 GKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRV 263
             GKGG+LT DET+II+GAL+LTEKTA++AMTPI + FSL++++ L+ E +  I++ GHSRV
Sbjct:   182 GKGGDLTTDETSIITGALELTEKTAKDAMTPISNAFSLELDTPLNLETLNTIMSVGHSRV 241

Query:   264 PVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSH 323
             PVY  NP +IIGL+LVK+LL V    E P+  +S+R+IPRV   MPLYDILNEFQKG SH
Sbjct:   242 PVYFRNPTHIIGLILVKNLLAVDARKEVPLRKMSMRKIPRVSETMPLYDILNEFQKGHSH 301

Query:   324 MAAVVKAKGKSKTLPPMTD 342
             +A V K   + +  P  ++
Sbjct:   302 IAVVYKDLDEQEQSPETSE 320

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

ASPGD|ASPL0000049101 AN1876 [Emericella nidulans (taxid:162425)]

 Score = 556 (200.8 bits), Expect = 1.4e-62, Sum P(2) = 1.4e-62
 Identities = 122/340 (35%), Positives = 195/340 (57%)

Query:     1 MQLLNAVMATRMLTSTMKNGGGPSSEGIPFGSVWWFVYAGISCVLVLFAXXXXXXXXXXX 60
             + L++A   ++ L    ++     +  +P      ++Y G++  LVL             
Sbjct:    29 ISLVSAAPTSQFLAP--RHDAHAETHALPANDATLWLYLGVAAALVLTGGAFAGLTIALM 86

Query:    61 XXXXXXXXILQRSG-TPSEKKQAAAIFPVVQK-QHQLLVTLLLCNAASMEALPIYLDK-L 117
                     ++Q SG +PSE+K AA++  ++++ +H +LVTLLL N  + E LPI LD+ L
Sbjct:    87 GQDEVYLQVIQTSGDSPSERKNAASVLRLLKRGKHWVLVTLLLSNVITNETLPIILDRSL 146

Query:   118 FNQYVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILD 177
                + A++ S   ++ FGE++PQ+IC RYGL +GA     V  LM +  P+A+P+ K+LD
Sbjct:   147 GGGWPAVLGSTVLIVIFGEIVPQSICVRYGLPIGAWMAPCVLGLMYLMAPVAWPVAKLLD 206

Query:   178 WVLGHNEA-LFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIE 236
              +LG +   ++++A LK LVT+H      G +L  DE TIIS  LDL EK+    MTP+E
Sbjct:   207 RLLGEDHGTIYKKAGLKTLVTLHKTLGEAGEQLNSDEVTIISAVLDLKEKSVGAIMTPME 266

Query:   237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSG-NPKNIIGLLLVKSLLTVRPETETPVSA 295
               F++  ++ LD   M  IL++G+SR+P++S  NP+N IG+LLVK L+T  PE   PVS 
Sbjct:   267 DVFTMSADTVLDEPTMDLILSQGYSRIPIHSPENPRNFIGMLLVKMLITYDPEDCKPVSH 326

Query:   296 VSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSK 335
              ++  +P    +    DI+N FQ+G SHM  V +  G+ +
Sbjct:   327 FALATLPETRPETSCLDIVNFFQEGKSHMVLVSEFPGEDR 366

GO:0030026 "cellular manganese ion homeostasis" evidence=IEA

GO:0007005 "mitochondrion organization" evidence=IEA

GO:0000329 "fungal-type vacuole membrane" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

SGD|S000005421 MAM3 "Protein required for normal mitochondrial morphology" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 529 (191.3 bits), Expect = 4.2e-59, Sum P(2) = 4.2e-59
 Identities = 116/301 (38%), Positives = 173/301 (57%)

Query:    38 YAGISCVLVLFAXXXXXXXXXXXXXXXXXXXILQRSGTPSEKKQAAAIFPVVQK-QHQLL 96
             Y  IS +LVL                     ++  SG+ SEKK A  +  ++ + +H +L
Sbjct:    64 YYIISIILVLLGGVFAGLTLGLMGQDEVYLKVISTSGSNSEKKLAKRVLDLISRGKHWVL 123

Query:    97 VTLLLCNAASMEALPIYLDK-LFNQYVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFV 155
             VTLLL N  + E LPI LD+ L   + A++ S   ++ FGE+IPQ++C +YGL VGA F 
Sbjct:   124 VTLLLSNVITNETLPIVLDRCLGGGWQAVVSSTILIVIFGEIIPQSVCVKYGLQVGAFFC 183

Query:   156 WLVRILMIICYPIAYPIGKILDWVLGHNEA-LFRRAQLKALVTIHSQEAGKGGELTHDET 214
               V +LM + YP+AYPI  +LD++LG +   +++++ LK LVT+H     +   LT DE 
Sbjct:   184 PFVLVLMYLMYPVAYPIATLLDYMLGEDHGTMYKKSGLKTLVTLHRTMGVE--RLTKDEV 241

Query:   215 TIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGN-PKNI 273
             TIIS  LDL  K  EE MTPIE+ F++  ++ LD + + KI   G SR+P++  N P N 
Sbjct:   242 TIISAVLDLKAKRVEEIMTPIENVFTMSADTILDDKTVEKIFNSGFSRIPIFLPNEPNNF 301

Query:   274 IGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGK 333
             IG+LLV+ L++  P+   P+S   +  +P    +    +ILN FQ+G +HM  V K  G 
Sbjct:   302 IGMLLVRVLISYDPDDCLPISHFPLATLPETSPNTSCLNILNYFQEGKAHMCVVSKEPGS 361

Query:   334 S 334
             S
Sbjct:   362 S 362

GO:0005773 "vacuole" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=ISM;IEA

GO:0003674 "molecular_function" evidence=ND

GO:0007005 "mitochondrion organization" evidence=IMP

GO:0000329 "fungal-type vacuole membrane" evidence=IDA

GO:0030026 "cellular manganese ion homeostasis" evidence=IMP

GO:0016020 "membrane" evidence=IEA

POMBASE|SPCC4B3.03c SPCC4B3.03c "mitochondrial morphology protein (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 502 (181.8 bits), Expect = 1.6e-57, Sum P(2) = 1.6e-57
 Identities = 115/320 (35%), Positives = 183/320 (57%)

Query:    18 KNGGGPSSEGIPFGSVWWFVYAGISCVLVLFAXXXXXXXXXXXXXXXXXXXILQRSGTPS 77
             ++GG  S+E       W  +   IS VL+L                     +L++SG  S
Sbjct:    47 QDGGFVSAEKDSDFEYWMKLI--ISAVLILLGGVFAGLTIGLMGCDDLHLQVLEQSGDAS 104

Query:    78 EKKQAAAIFPVVQK-QHQLLVTLLLCNAASMEALPIYLDKLFNQ-YVAIILSVTFVLFFG 135
             E+  A  +  ++++ +H +LVTLLL N    E LPI  D +    + A+++S   ++ FG
Sbjct:   105 ERVHARKVLKLLRRGKHWVLVTLLLGNVIVNETLPIVFDSIIGGGWPAVLISTAMIVIFG 164

Query:   136 EVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVLGHNEA-LFRRAQLKA 194
             EVIPQA C RYGL++GA    +V  +M + +PIAYP   ILD  LG +++ +++++ LK 
Sbjct:   165 EVIPQATCVRYGLSIGAKLEPIVLFMMYLLWPIAYPTALILDACLGESQSTMYKKSGLKT 224

Query:   195 LVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGK 254
             LVT+H ++ G   +L  DE TII+  LDL EK AE  MTPIE  F+L ++  LD + +G+
Sbjct:   225 LVTLH-RDLGID-KLNQDEVTIITAVLDLREKHAESIMTPIEDVFTLPMDRILDEDLIGE 282

Query:   255 ILARGHSRVPVYS-GNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDI 313
             I+  G+SR+PV+  G P + IG+LL K+L+   P+ + PV   ++  +P+   +    D+
Sbjct:   283 IICAGYSRIPVHKPGFPHDFIGMLLTKTLIGYDPDDKWPVGKFALATLPQTWPNTSCLDL 342

Query:   314 LNEFQKGSSHMAAVVKAKGK 333
             LN  Q+G SHM  +  + G+
Sbjct:   343 LNYCQEGKSHMILISNSPGE 362

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0007005 "mitochondrion organization" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0030026 "cellular manganese ion homeostasis" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9ZVS8	Y1327_ARATH	No assigned EC number	0.7393	0.9348	0.8336	no	no
Q67XQ0	Y4424_ARATH	No assigned EC number	0.7865	0.9775	0.8805	yes	no
Q4V3C7	Y4423_ARATH	No assigned EC number	0.7438	0.9797	0.8808	no	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.VIII.297.1	hypothetical protein (496 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.00012610	hypothetical protein (232 aa)			•						0.442

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	445
COG1253	429	COG1253, TlyC, Hemolysins and related proteins con	2e-41
pfam01595	182	pfam01595, DUF21, Domain of unknown function DUF21	1e-31
TIGR03520	408	TIGR03520, GldE, gliding motility-associated prote	1e-23
COG4536	423	COG4536, CorB, Putative Mg2+ and Co2+ transporter	3e-22
cd04590	111	cd04590, CBS_pair_CorC_HlyC_assoc, This cd contain	1e-18
COG4535	293	COG4535, CorC, Putative Mg2+ and Co2+ transporter	2e-11
PRK15094	292	PRK15094, PRK15094, magnesium/cobalt efflux protei	6e-09
PRK11573	413	PRK11573, PRK11573, hypothetical protein; Provisio	3e-05
COG1253	429	COG1253, TlyC, Hemolysins and related proteins con	1e-04
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	4e-04

>gnl|CDD|224173 COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]

 Score =  152 bits (385), Expect = 2e-41
 Identities = 81/302 (26%), Positives = 131/302 (43%), Gaps = 22/302 (7%)

Query: 44  VLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCN 103
           +L+  +   S     L+SL    LE L   G     K+A A   ++++ ++ L T+ L  
Sbjct: 12  LLIALSAFFSAAEFALVSLRRSRLEQLAEEG----NKRAKAALKLIERLNRYLSTVQLGI 67

Query: 104 -----AASMEALPIYLDKLFNQYVAIILSVTFVLF--------FGEVIPQAICTRYGLAV 150
                       P     L     A+ LS              FGE++P++I  R    V
Sbjct: 68  TLVSLLLGAVGEPALAALLEPLLEALGLSAALSFAIITFLHVVFGELVPKSIAIRNPEKV 127

Query: 151 GANFVWLVRILMIICYPIAYPIGKILDWVLG-HNEALFRRAQLKALVTIHS--QEAGKGG 207
                  +R    + YP+ + + +I + +L            L +         E+ + G
Sbjct: 128 ALLIAPPLRFFYRLLYPLIWLLNRIANAILRLFGVEPVEEEALTSTEEELELVSESAEEG 187

Query: 208 ELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYS 267
            L  +E  +I+  LDL ++T  E MTP     +LD+   ++ E +  IL  GHSR+PVY 
Sbjct: 188 VLEEEEREMINNVLDLDDRTVREIMTPRTDIVALDLTDTVE-ELIELILESGHSRIPVYD 246

Query: 268 GNPKNIIGLLLVKSLLTVRPETE-TPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAA 326
           G+  NIIG++ VK LL    + +      V +R    VP  + L D+L EF++  +HMA 
Sbjct: 247 GDLDNIIGIVHVKDLLRALLDGQSDLDLRVLVRPPLFVPETLSLSDLLEEFREERTHMAI 306

Query: 327 VV 328
           VV
Sbjct: 307 VV 308

Length = 429

>gnl|CDD|216595 pfam01595, DUF21, Domain of unknown function DUF21

 Score =  118 bits (299), Expect = 1e-31
 Identities = 43/189 (22%), Positives = 76/189 (40%), Gaps = 21/189 (11%)

Query: 38  YAGISCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQLLV 97
              I  +L+L +   S     L+SL    LE L   G     K A  +  ++    +LL 
Sbjct: 2   LLLIIVLLLLLSAFFSASETALVSLSRSRLEELAEEG----NKGARRLLKLLANPDRLLA 57

Query: 98  TLLLCNAASMEALPIYLDKLFNQY--------VAIILSVTFVLFFGEVIPQAICTRYGLA 149
           TLLL N  +   L         +         +A ++S   +L FGE++P+ +  R    
Sbjct: 58  TLLLGNTLANILLGALATLAAAELLLGSLGVLLATLVSTLLILVFGEILPKTLARRNPER 117

Query: 150 VGANFVWLVRILMIICYPIAYPIGKILDWVLG-----HNEALFRRAQLKALVTIHSQEAG 204
           +       +R+LM + YP+ + + K+ + +L               +L+ALV    +E  
Sbjct: 118 IALRLAPPLRVLMKLLYPLVWLLSKLSNLLLRLFGVKPEGPAVTEEELRALVDEGEEE-- 175

Query: 205 KGGELTHDE 213
             G +  +E
Sbjct: 176 --GVIEEEE 182

This transmembrane region has no known function. Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Treponema hyodysenteriae hemolysin C that does not contain this domain. This domain is found in the N-terminus of the proteins adjacent to two intracellular CBS domains pfam00571. Length = 182

>gnl|CDD|132559 TIGR03520, GldE, gliding motility-associated protein GldE

 Score =  101 bits (254), Expect = 1e-23
 Identities = 76/316 (24%), Positives = 138/316 (43%), Gaps = 30/316 (9%)

Query: 44  VLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCN 103
           +L+L + ++SG  +   SL   +L   +   +  E+     +  ++ +  +LL T+L+ N
Sbjct: 3   LLLLLSALVSGSEVAFFSLSPTDLNDEEEDNSKKEQI----VINLLDRPKKLLATILIAN 58

Query: 104 AASMEALPIYLDKLFNQYVAIILS-----------VTF-VLFFGEVIPQAICTRYGLAVG 151
                A+ +    L +       +           VTF +L FGE++P+    R  L   
Sbjct: 59  NFINIAIVLLFTSLSDNLFGSFNTELLRFLIEVVIVTFLILLFGEILPKVYANRNNLKFA 118

Query: 152 ANFVWLVRILMIICYPIAYPIGKILDWV---LGHNEALFRRAQLKALVTIHSQEAGKGGE 208
               + + IL  +  PI+ P+  I +++    G  ++     QL   + +  +E      
Sbjct: 119 KFMAYPINILDKVFSPISLPLRAITNFIHKKFGKQKSNISVDQLSQALELTDEED----- 173

Query: 209 LTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSG 268
            T +E  I+ G +       ++ M P    F+LD+ +    E + KI+  G+SR+PVY  
Sbjct: 174 TTKEEQKILQGIVSFGNTDTKQVMRPRLDIFALDIETSFS-EIIPKIIENGYSRIPVYKE 232

Query: 269 NPKNIIGLLLVKSLLTVRP--ETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAA 326
              NI G+L +K LL   P    +       +R    VP +  L D+L +FQ+  +H+A 
Sbjct: 233 TIDNITGVLYIKDLL---PHLNKKNFDWQSLLREPYFVPENKKLDDLLRDFQEKKNHLAI 289

Query: 327 VVKAKGKSKTLPPMTD 342
           VV   G +  L  + D
Sbjct: 290 VVDEYGGTSGLVTLED 305

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype. Length = 408

>gnl|CDD|226911 COG4536, CorB, Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

 Score = 97.8 bits (244), Expect = 3e-22
 Identities = 105/412 (25%), Positives = 174/412 (42%), Gaps = 50/412 (12%)

Query: 35  WFVYAGISCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQ 94
           W +   I  ++++ A   SG    L +L    L  L + G     + A  +  +++K  +
Sbjct: 3   WILIIAIIILIIISA-FFSGSETALTALNRYRLRHLAKQG----NRGAKRVEKLLEKPDR 57

Query: 95  LLVTLLLCN-----AASMEALPIYLDKLFNQYVAI-ILSVTFV-LFFGEVIPQAICTRYG 147
           L+ T+L+ N      AS  A  + +    +  VAI    +TFV L F EV+P+ I   Y 
Sbjct: 58  LIGTILIGNNLVNILASALATILGIRLYGDAGVAIATGVLTFVILVFAEVLPKTIAALYP 117

Query: 148 LAVGANFVWLVRILMIICYPIAYPIGKILDWVLGHNEALFRRAQLKALVTIHSQE----- 202
             V     +++ IL+ +  P+ + +  I   +L     L      +A+  + S+E     
Sbjct: 118 ERVALPSSFILAILVRLFGPLVWLLNAITRRLL----RLLGINLDQAVSQLSSKEELRTA 173

Query: 203 ---AGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEA-MGKILAR 258
              +G  G +   +  ++ G LDL   T  + M P      +D++    WE  + ++L  
Sbjct: 174 VNESGSEGSVNKIDRDMLLGVLDLENLTVSDIMVPRNEIIGIDID--DPWEEIVRQLLHS 231

Query: 259 GHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPR----VPSDMPLYDIL 314
            H+R+P+Y  +  NIIG+L V+ LL +  E     +   I R       VP   PL D L
Sbjct: 232 PHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNEF-TKEDILRAADEPYFVPEGTPLSDQL 290

Query: 315 NEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTE--- 371
             FQ+   H+A VV   G  + L  + D     L E  G   D T    +   E      
Sbjct: 291 VAFQRNKKHIALVVDEYGDIQGLVTLED----ILEEIVG---DFTDEHDTLAKEVIPQSD 343

Query: 372 -SVVVDVDRPLSSGSMNRLSSSQRSD---STTNGLI-YASEDI-EDGEVIGI 417
            S ++D    +    +NR       D    T NGL+    E+I E+G+ + I
Sbjct: 344 GSFIIDGSANVR--DLNRALDWNLPDEDARTINGLVLEELEEIPEEGQAVRI 393

Length = 423

>gnl|CDD|239963 cd04590, CBS_pair_CorC_HlyC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

 Score = 81.0 bits (201), Expect = 1e-18
 Identities = 38/91 (41%), Positives = 49/91 (53%), Gaps = 2/91 (2%)

Query: 239 FSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSI 298
            +LD +  L+ E +  I   GHSR PVY G+  NIIG++ VK LL    E E  +    +
Sbjct: 4   VALDADDTLE-EILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGEEDLDLRDL 62

Query: 299 RR-IPRVPSDMPLYDILNEFQKGSSHMAAVV 328
            R    VP   PL D+L E +K  SHMA VV
Sbjct: 63  LRPPLFVPESTPLDDLLEEMRKERSHMAIVV 93

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. The second CBS domain in this CD is degenerate. Length = 111

>gnl|CDD|226910 COG4535, CorC, Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 8/132 (6%)

Query: 201 QEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGH 260
           +++ +   +  D   ++ G +D+ +    + M P     +L  N  LD E +  I+   H
Sbjct: 42  RDSEQNELIDADTLDMLEGVMDIADLRVRDIMIPRSQMITLKRNQTLD-ECLDVIIESAH 100

Query: 261 SRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPR----VPSDMPLYDILNE 316
           SR PV S +  ++ G+LL K LL   P   +      I+ + R    VP    +  +L E
Sbjct: 101 SRFPVISEDKDHVEGILLAKDLL---PFMRSDAEPFDIKELLRPAVVVPESKRVDRLLKE 157

Query: 317 FQKGSSHMAAVV 328
           F+   +HMA V+
Sbjct: 158 FRSQRNHMAIVI 169

Length = 293

>gnl|CDD|185050 PRK15094, PRK15094, magnesium/cobalt efflux protein CorC; Provisional

 Score = 56.7 bits (137), Expect = 6e-09
 Identities = 36/121 (29%), Positives = 58/121 (47%), Gaps = 8/121 (6%)

Query: 212 DETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPK 271
           D   ++ G +D+ ++   + M P     +L  N  LD E +  I+   HSR PV S +  
Sbjct: 53  DTRDMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLD-ECLDVIIESAHSRFPVISEDKD 111

Query: 272 NIIGLLLVKSLLTVRPETETPVSAVSIRRIPR----VPSDMPLYDILNEFQKGSSHMAAV 327
           +I G+L+ K LL   P   +   A S+ ++ R    VP    +  +L EF+    HMA V
Sbjct: 112 HIEGILMAKDLL---PFMRSDAEAFSMDKVLRQAVVVPESKRVDRMLKEFRSQRYHMAIV 168

Query: 328 V 328
           +
Sbjct: 169 I 169

Length = 292

>gnl|CDD|236933 PRK11573, PRK11573, hypothetical protein; Provisional

 Score = 45.5 bits (108), Expect = 3e-05
 Identities = 79/325 (24%), Positives = 134/325 (41%), Gaps = 47/325 (14%)

Query: 45  LVLFAGIMSGLTLGLMSLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCN- 103
           +V+ +   SG   G+M+L    L  + + G  S K+    +  +++K  +L+  +L+ N 
Sbjct: 1   MVVISAYFSGSETGMMTLNRYRLRHMAKQGNRSAKR----VEKLLRKPDRLISLVLIGNN 56

Query: 104 ----AASMEALPIYLDKLFNQYVAIILSV-TFV-LFFGEVIPQAICTRYGLAVGANFVWL 157
                AS     + +    +  VAI   V TFV L F EV+P+ I   Y   V     +L
Sbjct: 57  LVNILASALGTIVGMRLYGDAGVAIATGVLTFVVLVFAEVLPKTIAALYPEKVAYPSSFL 116

Query: 158 VRILMIICYPIAYPIGKILDWVLGHNEALFRRAQLKALVTIHSQEAGKGGELTHDE-TTI 216
           +  L I+  P+         W+L     L  R     L+ I + +    G L+ +E  TI
Sbjct: 117 LAPLQILMMPLV--------WLLNTITRLLMR-----LMGIKT-DIVVSGALSKEELRTI 162

Query: 217 IS---------------GALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARG-H 260
           +                  LDL + T ++ M P      +D+N   DW+++ + L    H
Sbjct: 163 VHESRSQISRRNQDMLLSVLDLEKVTVDDIMVPRNEIVGIDIND--DWKSILRQLTHSPH 220

Query: 261 SRVPVYSGNPKNIIGLLLVKS---LLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEF 317
            R+ +Y  +  + I +L V+    L+T + E        +   I  VP   PL   L +F
Sbjct: 221 GRIVLYRDSLDDAISMLRVREAYRLMTEKKEFTKENMLRAADEIYFVPEGTPLSTQLVKF 280

Query: 318 QKGSSHMAAVVKAKGKSKTLPPMTD 342
           Q+    +  VV   G  + L  + D
Sbjct: 281 QRNKKKVGLVVDEYGDIQGLVTVED 305

Length = 413

>gnl|CDD|224173 COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 16/29 (55%), Positives = 21/29 (72%), Gaps = 1/29 (3%)

Query: 410 EDGEVIGIITLEDVFEELLQEEIVDETDE 438
           E G V G++TLED+ EE++  EI DE DE
Sbjct: 310 EYGGVEGLVTLEDIIEEIVG-EIPDEHDE 337

Length = 429

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 39.7 bits (93), Expect = 4e-04
 Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 5/88 (5%)

Query: 250 EAMGKILARGHSRVPVYSGNPKNIIGLL----LVKSLLTVRPETETPVSAVSIRRIPRVP 305
           EA+  +L  G S +PV   +   ++G++    L+++L     +    V  V  R +  V 
Sbjct: 14  EALRLMLEHGISGLPVVDDD-GRLVGIVTERDLLRALAEGGLDPLVTVGDVMTRDVVTVS 72

Query: 306 SDMPLYDILNEFQKGSSHMAAVVKAKGK 333
            D  L +      +       VV  +G+
Sbjct: 73  PDTSLEEAAELMLEHGIRRLPVVDDEGR 100

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	445
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	100.0
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	100.0
PRK11573	413	hypothetical protein; Provisional	100.0
COG1253	429	TlyC Hemolysins and related proteins containing CB	100.0
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	100.0
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	99.97
KOG2118	498	consensus Predicted membrane protein, contains two	99.96
PF01595	183	DUF21: Domain of unknown function DUF21; InterPro:	99.95
COG3448	382	CBS-domain-containing membrane protein [Signal tra	99.71
COG2524	294	Predicted transcriptional regulator, contains C-te	99.68
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	99.67
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	99.6
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	99.59
COG4109	432	Predicted transcriptional regulator containing CBS	99.57
COG1253	429	TlyC Hemolysins and related proteins containing CB	99.53
PRK11573	413	hypothetical protein; Provisional	99.51
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	99.47
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	99.46
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	99.44
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	99.43
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	99.42
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	99.41
COG3620	187	Predicted transcriptional regulator with C-termina	99.4
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	99.39
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	99.38
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	99.38
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	99.37
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	99.37
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	99.37
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	99.37
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	99.37
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	99.37
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	99.35
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	99.35
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	99.34
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	99.34
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	99.34
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	99.34
PRK01862	574	putative voltage-gated ClC-type chloride channel C	99.33
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	99.33
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	99.32
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	99.32
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	99.32
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	99.31
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	99.31
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	99.31
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	99.31
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	99.31
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	99.31
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	99.3
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	99.3
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	99.29
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	99.29
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	99.29
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	99.29
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	99.28
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	99.28
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	99.28
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	99.28
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	99.28
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	99.28
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	99.28
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	99.27
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	99.27
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	99.26
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	99.26
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	99.26
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	99.26
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	99.26
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	99.26
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	99.25
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	99.25
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	99.25
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	99.25
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	99.25
PLN02274	505	inosine-5'-monophosphate dehydrogenase	99.25
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	99.24
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	99.24
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	99.24
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	99.23
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	99.23
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	99.22
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	99.21
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	99.2
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	99.2
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	99.2
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	99.19
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	99.19
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	99.18
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	99.18
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	99.17
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	99.16
COG0517	117	FOG: CBS domain [General function prediction only]	99.13
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	99.13
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	99.12
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	99.11
COG2905	610	Predicted signal-transduction protein containing c	99.07
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	98.96
PRK14869	546	putative manganese-dependent inorganic pyrophospha	98.84
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	98.71
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	98.53
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	98.44
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	98.41
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	98.28
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	98.27
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	98.15
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	98.11
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	97.82
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	97.73
PRK14869	546	putative manganese-dependent inorganic pyrophospha	97.72
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	97.61
COG2524	294	Predicted transcriptional regulator, contains C-te	97.61
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	97.6
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	97.59
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	97.57
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	97.56
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	97.53
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	97.5
COG3448	382	CBS-domain-containing membrane protein [Signal tra	97.43
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	97.41
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	97.4
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	97.32
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	97.3
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	97.29
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	97.28
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	97.27
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	97.23
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	97.22
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	97.22
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	97.21
COG3620	187	Predicted transcriptional regulator with C-termina	97.18
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	97.18
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	97.17
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	97.17
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	97.16
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	97.16
PLN02274	505	inosine-5'-monophosphate dehydrogenase	97.14
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	97.13
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	97.13
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	97.13
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	97.12
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	97.11
KOG0475	696	consensus Cl- channel CLC-3 and related proteins (	97.1
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	97.08
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	97.08
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	97.07
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	97.05
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	97.05
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	97.04
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	97.04
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	97.02
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	97.02
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	97.02
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	97.01
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	97.0
COG0517	117	FOG: CBS domain [General function prediction only]	96.99
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	96.99
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	96.98
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	96.98
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	96.98
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	96.98
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	96.98
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	96.98
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	96.97
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	96.96
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	96.96
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	96.96
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	96.96
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	96.95
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	96.92
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	96.9
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	96.88
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	96.87
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	96.87
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	96.86
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	96.79
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	96.78
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	96.77
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	96.76
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	96.75
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	96.73
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	96.68
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	96.65
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	96.61
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	96.57
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	96.57
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	96.53
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	96.49
PRK01862	574	putative voltage-gated ClC-type chloride channel C	96.49
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	96.47
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	96.26
COG2905	610	Predicted signal-transduction protein containing c	96.22
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	96.21
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	96.2
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	96.01
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	96.0
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	95.88
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	94.91
COG4109	432	Predicted transcriptional regulator containing CBS	94.21
PF03471	81	CorC_HlyC: Transporter associated domain; InterPro	93.27
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	92.17
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	91.85
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	89.74
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	88.34

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.5e-66  Score=500.57  Aligned_cols=369  Identities=23%  Similarity=0.325  Sum_probs=327.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 013310           34 WWFVYAGISCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCNAASMEALPIY  113 (445)
Q Consensus        34 ~w~~~~~i~~~ll~lsafFs~~E~Al~s~~~~~l~~~~~~g~~~~~~~a~~~~~l~~~~~~~l~tili~n~~~~~~~~~~  113 (445)
                      .|+ +++++++|+.+||||||+|+|+++++|.|++.++++|++    +|+++.+++++|+++++++|+|||++|++.+.+
T Consensus         2 ~~~-l~~~iiili~iSAfFSgSETal~a~nr~Rlr~la~~G~~----~Akrv~kLL~k~drlig~iLIGNNLvNilasal   76 (423)
T COG4536           2 TWI-LIIAIIILIIISAFFSGSETALTALNRYRLRHLAKQGNR----GAKRVEKLLEKPDRLIGTILIGNNLVNILASAL   76 (423)
T ss_pred             cch-HHHHHHHHHHHHHHhcccHHHHhhccHHHHHHHHHccch----hhHHHHHHhcCchheeeeeeecccHHHHHHHHH
Confidence            354 456677789999999999999999999999999999995    689999999999999999999999999876655


Q ss_pred             HH----HHHHH---HHHHHHHHHHHHhhhccchhhHHHhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhh---hCCC
Q 013310          114 LD----KLFNQ---YVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWV---LGHN  183 (445)
Q Consensus       114 ~~----~~~~~---~~a~~~~t~lilvfgEiiPK~la~~~~~~ia~~~a~~~~~~~~~~~P~~~~~~~~~~~~---~~~~  183 (445)
                      ..    .+||.   .+|++++|+++++|+|++||++|..||++++...++++..+.++|+|++|.++++++.+   ||.+
T Consensus        77 aT~~~irl~Gd~GvaIAt~~mT~vilvFaEVlPKt~Aa~~perva~~~s~~l~~l~~l~~Plv~lln~it~~llrl~gi~  156 (423)
T COG4536          77 ATILGIRLYGDAGVAIATGVLTFVILVFAEVLPKTIAALYPERVALPSSFILAILVRLFGPLVWLLNAITRRLLRLLGIN  156 (423)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHHHHHHhcchHHhhhChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence            43    34443   37788999999999999999999999999999999999999999999999999888764   6765


Q ss_pred             c-----ccccHHHHHHHHHHhhhhhccCCCCCHHHHHHHHHhhcCcccccccccccCCceEEeeCCCCccHHHHHHHHHc
Q 013310          184 E-----ALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILAR  258 (445)
Q Consensus       184 ~-----~~~s~eEl~~li~~~~~e~~~~g~l~~~E~~~l~~~~~l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~  258 (445)
                      .     ...|.||+|.+++    +++.+|...+++++|+.+++++++.+|+|||+||.++..++.|++.+ +.++.+...
T Consensus       157 ~~~~~~~~~s~EElR~~v~----~~~~e~~~~~~~rdmL~gvLDLe~~tV~DIMvpR~~i~~id~d~~~e-~iv~ql~~s  231 (423)
T COG4536         157 LDQAVSQLSSKEELRTAVN----ESGSEGSVNKIDRDMLLGVLDLENLTVSDIMVPRNEIIGIDIDDPWE-EIVRQLLHS  231 (423)
T ss_pred             cccccccccCHHHHHHHHH----HhhcccccccccHHHHhcccccccceeeeeeccccceeeecCCCCHH-HHHHHHhhC
Confidence            2     5678999999998    45567888788999999999999999999999999999999999998 999999999


Q ss_pred             CCcEEEeEeCCCCCEEEEEEhhhhhccCCCCC-Ccccccc--ccCCceeCCCCCHHHHHHHHhhCCCeEEEEEccCCCcc
Q 013310          259 GHSRVPVYSGNPKNIIGLLLVKSLLTVRPETE-TPVSAVS--IRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSK  335 (445)
Q Consensus       259 ~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~-~~v~~im--~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~  335 (445)
                      .|+|+|+|.++.|+++|++|.||+++++.+.+ ..-.+++  .+++++||+.+++.+.+..|++++.|++.||||||.+.
T Consensus       232 ~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~~~k~d~~~~a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~  311 (423)
T COG4536         232 PHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNEFTKEDILRAADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQ  311 (423)
T ss_pred             CCCceeeecCChhHhhhhhhHHHHHHHhhccCcccHhHHHHHhcCCeecCCCCcHHHHHHHHHHhcceEEEEEeccCcEE
Confidence            99999999999999999999999999876544 2222332  47899999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcccccccCCCCCCCCcccccccccCCCceEeeccCCCccccccccCCCCCC-CCCcccccc-ccCCCCCCc
Q 013310          336 TLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRS-DSTTNGLIY-ASEDIEDGE  413 (445)
Q Consensus       336 Giv~~T~~di~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~~~~~~~~~~~~~~-~~tl~g~~~-~~~~~e~g~  413 (445)
                      |+|  |.+||++|++|++.+++. .-..+..++.++++.+||+.+++|+|+.++|++|.+ +.|++|+.+ .++.||+.+
T Consensus       312 GLV--TLEDIlEEIVGdftde~d-~~~~ev~~q~dgs~iidGs~~iRdlNr~l~W~Lp~e~a~TinGLvle~le~IP~~~  388 (423)
T COG4536         312 GLV--TLEDILEEIVGDFTDEHD-TLAKEVIPQSDGSFIIDGSANVRDLNRALDWNLPDEDARTINGLVLEELEEIPEEG  388 (423)
T ss_pred             eee--eHHHHHHHHhccccccCc-ccchhhcccCCCcEEEeCCCcHHHHHHhcCCCCCCCcchhHHHHHHHHHHhCCCCC
Confidence            999  999999999999995542 223467788899999999999999999999999977 999999999 999999865


Q ss_pred             eE
Q 013310          414 VI  415 (445)
Q Consensus       414 l~  415 (445)
                      ..
T Consensus       389 ~~  390 (423)
T COG4536         389 QA  390 (423)
T ss_pred             eE
Confidence            44

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=100.00  E-value=2.4e-63  Score=508.61  Aligned_cols=356  Identities=22%  Similarity=0.356  Sum_probs=310.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH----HHH
Q 013310           43 CVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCNAASMEALPIYLD----KLF  118 (445)
Q Consensus        43 ~~ll~lsafFs~~E~Al~s~~~~~l~~~~~~g~~~~~~~a~~~~~l~~~~~~~l~tili~n~~~~~~~~~~~~----~~~  118 (445)
                      ++|+++||||||+|+|++|+++.|++.++++|++    +|+++++++++|+++++|+++||+++|.+.+.++.    .+|
T Consensus         2 ~~li~lsa~Fs~~E~Al~s~~~~~l~~l~~~~~~----~a~~~~~l~~~~~~~L~tiligntl~ni~~~~~~~~~~~~~~   77 (408)
T TIGR03520         2 ILLLLLSALVSGSEVAFFSLSPTDLNDEEEDNSK----KEQIVINLLDRPKKLLATILIANNFINIAIVLLFTSLSDNLF   77 (408)
T ss_pred             hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCH----HHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3467899999999999999999999999999874    68899999999999999999999999887665433    233


Q ss_pred             HH--------HHHHHHHHHHHHhhhccchhhHHHhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhh---hCCCcccc
Q 013310          119 NQ--------YVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWV---LGHNEALF  187 (445)
Q Consensus       119 ~~--------~~a~~~~t~lilvfgEiiPK~la~~~~~~ia~~~a~~~~~~~~~~~P~~~~~~~~~~~~---~~~~~~~~  187 (445)
                      +.        .++++++|+++++|||++||++|.+||++++.+++++++++++++||++|+++++++++   +|.++..+
T Consensus        78 ~~~~~~~~~~~~~~~~~t~l~lvfgEiiPK~la~~~~~~ia~~~a~~l~~~~~l~~P~~~~l~~~~~~i~~~~g~~~~~~  157 (408)
T TIGR03520        78 GSFNTELLRFLIEVVIVTFLILLFGEILPKVYANRNNLKFAKFMAYPINILDKVFSPISLPLRAITNFIHKKFGKQKSNI  157 (408)
T ss_pred             hhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence            21        13455678889999999999999999999999999999999999999999999988765   56655668


Q ss_pred             cHHHHHHHHHHhhhhhccCCCCCHHHHHHHHHhhcCcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEe
Q 013310          188 RRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYS  267 (445)
Q Consensus       188 s~eEl~~li~~~~~e~~~~g~l~~~E~~~l~~~~~l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~  267 (445)
                      |+|||+.+++.    ++++| ++++|+++++|+++|++++|+|+|+||+++++++.+++++ ++++.+.+++|||+|||+
T Consensus       158 t~eEl~~lv~~----~~~~g-~~~~E~~~i~~vl~l~~~~v~diMtpr~~v~~l~~~~~~~-e~~~~~~~~~~sR~PV~~  231 (408)
T TIGR03520       158 SVDQLSQALEL----TDEED-TTKEEQKILQGIVSFGNTDTKQVMRPRLDIFALDIETSFS-EIIPKIIENGYSRIPVYK  231 (408)
T ss_pred             CHHHHHHHHHh----HhhcC-CChHHHHHHHHHhccCCCEeeeeCCchHhEEEEECCCCHH-HHHHHHHhCCCCEEEEEc
Confidence            99999999984    33456 5899999999999999999999999999999999999998 999999999999999999


Q ss_pred             CCCCCEEEEEEhhhhhccCCCCCCccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEccCCCccCCCCCCCCCccc
Q 013310          268 GNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPK  347 (445)
Q Consensus       268 ~~~~~ivGiv~~kDll~~~~~~~~~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Giv~~T~~di~~  347 (445)
                      ++.|+++|+++.||++....++..++.++ ++++.+||+++++.++++.|++++.|+++|+||||+++|+|  |.+|+++
T Consensus       232 ~~~d~ivGiv~~kDll~~~~~~~~~l~~~-~~~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiV--T~eDile  308 (408)
T TIGR03520       232 ETIDNITGVLYIKDLLPHLNKKNFDWQSL-LREPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLV--TLEDIIE  308 (408)
T ss_pred             CCCCceEEEEEHHHHHhHhccCCCCHHHH-cCCCeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEE--EHHHHHH
Confidence            87789999999999987544333456776 57889999999999999999999999999999999999999  9999999


Q ss_pred             ccccCCCCCCCCcccccccccCCCceEeeccCCCccccccccCCCC------CCCCCcccccc-ccCCCCCC
Q 013310          348 LNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQ------RSDSTTNGLIY-ASEDIEDG  412 (445)
Q Consensus       348 ~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~~~~~~~~~~~~------~~~~tl~g~~~-~~~~~e~g  412 (445)
                      +++|++.++... ......+...+.|.++|..++.|+++.++.+++      +.+.|++||++ .++++|..
T Consensus       309 eivgei~de~d~-~~~~i~~~~~~~~~v~G~~~l~~l~~~l~~~~~~~~~~~~~~~Tl~G~i~~~l~~iP~~  379 (408)
T TIGR03520       309 EIVGDISDEFDD-EDLIYSKIDDNNYVFEGKTSLKDFYKILKLEEDMFDEVKGEAETLAGFLLEISGGFPKK  379 (408)
T ss_pred             HHhCCCCCcCCc-CccceEEeCCCeEEEEeccCHHHHHHHhCCCccccCCcCCCCccHHHHHHHHhCcCCCC
Confidence            999999887532 223345567888999999999999999998843      24899999999 99999874

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>PRK11573 hypothetical protein; Provisional

Probab=100.00  E-value=1.7e-63  Score=509.67  Aligned_cols=353  Identities=20%  Similarity=0.283  Sum_probs=307.4

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHcCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH----HHHH--
Q 013310           46 VLFAGIMSGLTLGLMSLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCNAASMEALPIYLD----KLFN--  119 (445)
Q Consensus        46 l~lsafFs~~E~Al~s~~~~~l~~~~~~g~~~~~~~a~~~~~l~~~~~~~l~tili~n~~~~~~~~~~~~----~~~~--  119 (445)
                      +++||||||+|+|++|+++.+++.++++|++    +|+++++++++|+++++|+++||+++|.+.+.+..    .+++  
T Consensus         2 i~lsafFs~~E~Al~s~~~~~l~~l~~~g~~----~a~~l~~l~~~~~~~Lstiligntl~~i~~~~l~~~~~~~~~~~~   77 (413)
T PRK11573          2 VVISAYFSGSETGMMTLNRYRLRHMAKQGNR----SAKRVEKLLRKPDRLISLVLIGNNLVNILASALGTIVGMRLYGDA   77 (413)
T ss_pred             eehhhHHHHHHHHHHHcCHHHHHHHHHcCCh----hHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            4679999999999999999999999999984    68899999999999999999999999887665432    2332  


Q ss_pred             -HHHHHHHHHHHHHhhhccchhhHHHhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhh---hCCCc-----ccccHH
Q 013310          120 -QYVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWV---LGHNE-----ALFRRA  190 (445)
Q Consensus       120 -~~~a~~~~t~lilvfgEiiPK~la~~~~~~ia~~~a~~~~~~~~~~~P~~~~~~~~~~~~---~~~~~-----~~~s~e  190 (445)
                       .+++++++|+++++|||++||++|.+||+++|.++++++++++++++|++|+++++++.+   +|.++     ..+|+|
T Consensus        78 ~~~ia~~i~t~l~lvfGEiiPK~la~~~~~~~a~~~a~~l~~~~~l~~P~v~~l~~~~~~l~~l~g~~~~~~~~~~~s~e  157 (413)
T PRK11573         78 GVAIATGVLTFVVLVFAEVLPKTIAALYPEKVAYPSSFLLAPLQILMMPLVWLLNTITRLLMRLMGIKTDIVVSGALSKE  157 (413)
T ss_pred             HHHHHHHHHHHHHHhhhhHhHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCCCHH
Confidence             235567788999999999999999999999999999999999999999999998887764   56542     358999


Q ss_pred             HHHHHHHHhhhhhccCCCCCHHHHHHHHHhhcCcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCC
Q 013310          191 QLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNP  270 (445)
Q Consensus       191 El~~li~~~~~e~~~~g~l~~~E~~~l~~~~~l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~  270 (445)
                      ||+.+++.    ++  +.++++|+++++|+++|++.+|+|+|+||+++++++.+++++ ++++.+.+++|||+|||+++.
T Consensus       158 El~~lv~~----~~--~~l~~~e~~mi~~vl~l~~~~v~eiMtPr~~i~~l~~~~~~~-e~~~~~~~~~~SR~PVy~~~~  230 (413)
T PRK11573        158 ELRTIVHE----SR--SQISRRNQDMLLSVLDLEKVTVDDIMVPRNEIVGIDINDDWK-SILRQLTHSPHGRIVLYRDSL  230 (413)
T ss_pred             HHHHHHHH----Hh--hhcCHHHHHHHHHHhccCCCChhhcCCccceEEEEECCCCHH-HHHHHHHhCCCceEEEEcCCC
Confidence            99999983    22  259999999999999999999999999999999999999998 999999999999999999988


Q ss_pred             CCEEEEEEhhhhhccCCCC-C---CccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEccCCCccCCCCCCCCCcc
Q 013310          271 KNIIGLLLVKSLLTVRPET-E---TPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKP  346 (445)
Q Consensus       271 ~~ivGiv~~kDll~~~~~~-~---~~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Giv~~T~~di~  346 (445)
                      |+++|++|.||++....++ +   ..+.++ .+|+.+||+++++.++++.|++++.|+++|+||||+++|+|  |.+|++
T Consensus       231 D~IiGiv~~kDll~~~~~~~~~~~~~l~~~-~r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~GiV--TleDil  307 (413)
T PRK11573        231 DDAISMLRVREAYRLMTEKKEFTKENMLRA-ADEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLV--TVEDIL  307 (413)
T ss_pred             CceEEEEEHHHHHHHhhccCcCCHHHHHhh-ccCCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCeEEEe--eHHHHH
Confidence            9999999999998643221 1   122243 68899999999999999999999999999999999999999  999999


Q ss_pred             cccccCCCCCCCCcccccccccCCCceEeeccCCCccccccccCCCCCC-CCCcccccc-ccCCCCCC
Q 013310          347 KLNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRS-DSTTNGLIY-ASEDIEDG  412 (445)
Q Consensus       347 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~~~~~~~~~~~~~~-~~tl~g~~~-~~~~~e~g  412 (445)
                      ++++|++.++..........+...+.|.++|..+++|+++.++.++++. +.|++||++ .++++|.-
T Consensus       308 EeivGei~de~d~~~~~~i~~~~~~~~~v~G~~~l~d~~~~l~~~l~~~~~~Tl~G~i~~~lg~iP~~  375 (413)
T PRK11573        308 EEIVGDFTTSMSPTLAEEVTPQNDGSVIIDGTANVREINKAFNWHLPEDDARTVNGVILEALEEIPVA  375 (413)
T ss_pred             HHHhCCCCcccCcccccceEEecCCEEEEEeeeEHHHHHHHhCCCCCCCCCeeHHHHHHHHhCcCCCC
Confidence            9999999887543222234555677899999999999999999998866 899999999 99999873

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=100.00  E-value=1.3e-57  Score=470.04  Aligned_cols=362  Identities=25%  Similarity=0.334  Sum_probs=311.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013310           38 YAGISCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCNAASMEALPIYLDKL  117 (445)
Q Consensus        38 ~~~i~~~ll~lsafFs~~E~Al~s~~~~~l~~~~~~g~~~~~~~a~~~~~l~~~~~~~l~tili~n~~~~~~~~~~~~~~  117 (445)
                      .++++++|+++|||||++|+|++|++|.|+++++++|++    +|.+++++.++++.+++++++|+++++...+......
T Consensus         6 ~~~~i~~li~l~~ff~a~E~A~~s~~~~rl~~~~~~g~~----~a~~~~~~~~~~~~~ls~~qigitl~~i~~g~~~~~~   81 (429)
T COG1253           6 TLLLILLLIALSAFFSAAEFALVSLRRSRLEQLAEEGNK----RAKAALKLIERLNRYLSTVQLGITLVSLLLGAVGEPA   81 (429)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHccCH----hHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456677799999999999999999999999999999874    6889999999999999999999999887665544332


Q ss_pred             HH----HHH-----H----HHHHHHHHHhhhccchhhHHHhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhh---C
Q 013310          118 FN----QYV-----A----IILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVL---G  181 (445)
Q Consensus       118 ~~----~~~-----a----~~~~t~lilvfgEiiPK~la~~~~~~ia~~~a~~~~~~~~~~~P~~~~~~~~~~~~~---~  181 (445)
                      +.    .+.     +    +++.|+++++|||++||++|++||++++.++++++++++++++|++|++++++++++   |
T Consensus        82 ~~~~l~~~~~~~~~~~~~~~~~~t~l~~i~gEl~PK~~a~~~~e~va~~~a~~~~~~~~l~~P~i~~~~~~a~~il~l~~  161 (429)
T COG1253          82 LAALLEPLLEALGLSAALSFAIITFLHVVFGELVPKSIAIRNPEKVALLIAPPLRFFYRLLYPLIWLLNRIANAILRLFG  161 (429)
T ss_pred             HHHHHHHHhhhccchhHHHHHHHHhhhheeechhhhHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            21    111     1    456788899999999999999999999999999999999999999999999998864   4


Q ss_pred             CC---c--ccccHHHHHHHHHHhhhhhccCCCCCHHHHHHHHHhhcCcccccccccccCCceEEeeCCCCccHHHHHHHH
Q 013310          182 HN---E--ALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKIL  256 (445)
Q Consensus       182 ~~---~--~~~s~eEl~~li~~~~~e~~~~g~l~~~E~~~l~~~~~l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~  256 (445)
                      .+   +  ...+.++++ +++    ++.++|.++++|++|++|+|+|++++|+++|+||+++++++.+.+.+ ++.+.+.
T Consensus       162 ~~~~~~~~~~~~~~~~~-~~~----~~~~~g~~~~~E~~mi~~v~~l~~~~v~eiMtPR~~i~~l~~~~~~~-~~~~~~~  235 (429)
T COG1253         162 VEPVEEEALTSTEEELE-LVS----ESAEEGVLEEEEREMINNVLDLDDRTVREIMTPRTDIVALDLTDTVE-ELIELIL  235 (429)
T ss_pred             CCCCCccccCccHHHHH-HHH----hHHhcCCcCHHHHHHHHHHhccCCcEeeeEeeecccEEEEcCCCCHH-HHHHHHH
Confidence            33   2  345677777 776    56678999999999999999999999999999999999999999998 9999999


Q ss_pred             HcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCCCC-ccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEccCCCcc
Q 013310          257 ARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETET-PVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSK  335 (445)
Q Consensus       257 ~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~~-~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~  335 (445)
                      +++|||+|||+++.|+++|++|.||++....+++. .....-.+|+++||+++++.+++++|++++.|+|+|+||||++.
T Consensus       236 ~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~~~~~~~~~~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~~  315 (429)
T COG1253         236 ESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQSDLDLRVLVRPPLFVPETLSLSDLLEEFREERTHMAIVVDEYGGVE  315 (429)
T ss_pred             hCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCccccchhhcccCCeEecCCCcHHHHHHHHHHhCCeEEEEEEcCCCeE
Confidence            99999999999888999999999999987655432 22222246999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcccccccCCCCCCCCcccccccccCCCceEeeccCCCccccccccCCCCCC--CCCcccccc-ccCCCCC
Q 013310          336 TLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRS--DSTTNGLIY-ASEDIED  411 (445)
Q Consensus       336 Giv~~T~~di~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~~~~~~~~~~~~~~--~~tl~g~~~-~~~~~e~  411 (445)
                      |+|  |.+||+++++|++.++.....+....+...++|.++|.+++.|+++.++.+.+..  ++|++|+++ .++++|.
T Consensus       316 GlV--TleDIiEeIvGei~de~d~~~~~~~~~~~~~~~~v~G~~~l~e~~~~l~~~~~~~~~~~Ti~G~v~~~lg~iP~  392 (429)
T COG1253         316 GLV--TLEDIIEEIVGEIPDEHDEDEEEDIIQRDDDGWLVDGRVPLEELEELLGIDLDEEEDYDTIAGLVLSLLGRIPK  392 (429)
T ss_pred             EEe--EHHHHHHHHhCCCcCcccccccccceEecCCcEEEeccccHHHHHHHhCCCCcccCCcccHHHHHHHHhCcCCC
Confidence            999  9999999999999998765443334444444499999999999999999986444  999999999 9999994

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=100.00  E-value=1.1e-33  Score=277.50  Aligned_cols=226  Identities=21%  Similarity=0.261  Sum_probs=197.3

Q ss_pred             hhhhCCCcccccHHHHHHHHHHhhhhhccCCCCCHHHHHHHHHhhcCcccccccccccCCceEEeeCCCCccHHHHHHHH
Q 013310          177 DWVLGHNEALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKIL  256 (445)
Q Consensus       177 ~~~~~~~~~~~s~eEl~~li~~~~~e~~~~g~l~~~E~~~l~~~~~l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~  256 (445)
                      ..++|.++  .|++||+.+++    ++.++|.++++|++++.++++|++.+|+++|+||.++++++.+++++ ++++.+.
T Consensus        24 ~~~~~~~~--~t~eEl~~l~~----~~~~~g~l~~~e~~~i~~vl~l~~~~V~diMtpr~~i~~l~~~~sl~-e~~~~i~   96 (292)
T PRK15094         24 SQLFHGEP--KNRDELLALIR----DSEQNDLIDEDTRDMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLD-ECLDVII   96 (292)
T ss_pred             HHHcCCCC--CCHHHHHHHHH----hHhhcCCCCHHHHHHHHHHhccCCCEEeEEccchHHEEEEeCCCCHH-HHHHHHH
Confidence            33456554  58999999998    45567999999999999999999999999999999999999999998 9999999


Q ss_pred             HcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCC--CCccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEccCCCc
Q 013310          257 ARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET--ETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKS  334 (445)
Q Consensus       257 ~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~--~~~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~  334 (445)
                      +++|+++|||+++.++++|+|+.+|++.....+  ..++.++| +++++|++++++.++++.|++++.|++||+||||++
T Consensus        97 ~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~l~~l~-r~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~v  175 (292)
T PRK15094         97 ESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDAEAFSMDKVL-RQAVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGV  175 (292)
T ss_pred             hcCCcEEEEecCCCCcEEEEEEHHHHHhHhhccCCcCCHHHHc-CCCcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCCE
Confidence            999999999987668999999999998643221  23467764 677799999999999999999999999999999999


Q ss_pred             cCCCCCCCCCcccccccCCCCCCCCcccccccccCCCceEeeccCCCccccccccCCCCCC-CCCcccccc-ccCCCCCC
Q 013310          335 KTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRS-DSTTNGLIY-ASEDIEDG  412 (445)
Q Consensus       335 ~Giv~~T~~di~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~~~~~~~~~~~~~~-~~tl~g~~~-~~~~~e~g  412 (445)
                      +|+|  |.+|+++++.|++.++..........+...+.|.++|.+++.++++.++..++.. +.|++||++ .++++|..
T Consensus       176 iGiV--TleDIle~ivGei~de~d~~~~~~i~~~~~~~~~v~G~~~l~dl~~~l~~~l~~~~~~Tl~G~i~~~l~~iP~~  253 (292)
T PRK15094        176 SGLV--TIEDILELIVGEIEDEYDEEDDIDFRQLSRHTWTVRALASIEDFNEAFGTHFSDEEVDTIGGLVMQAFGHLPAR  253 (292)
T ss_pred             EEEe--EHHHHHHHHhCCCccccccccccccEEeCCCeEEEEeccCHHHHHHHhCCCCCCCCCccHHHHHHHHhCcCCCC
Confidence            9999  9999999999999887653332345666788899999999999999999988855 999999999 99999874

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=99.97  E-value=4e-33  Score=253.58  Aligned_cols=230  Identities=20%  Similarity=0.250  Sum_probs=204.5

Q ss_pred             HHHHHhhhhCCCcccccHHHHHHHHHHhhhhhccCCCCCHHHHHHHHHhhcCcccccccccccCCceEEeeCCCCccHHH
Q 013310          172 IGKILDWVLGHNEALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEA  251 (445)
Q Consensus       172 ~~~~~~~~~~~~~~~~s~eEl~~li~~~~~e~~~~g~l~~~E~~~l~~~~~l~~~~V~diMtpr~~vv~v~~~~sl~~e~  251 (445)
                      +.++++.+|..++  -+++||-.+++    .+++.+.++++-..|++++++..+.+|+|+|.||+++++++.+.++. ++
T Consensus        19 fe~L~~~~f~gEp--knr~eLl~liR----dse~n~LiD~dt~~mlEGvm~iadl~vrDiMIPRSQM~~l~~~~~l~-~~   91 (293)
T COG4535          19 FERLLSQLFHGEP--KNREELLELIR----DSEQNELIDADTLDMLEGVMDIADLRVRDIMIPRSQMITLKRNQTLD-EC   91 (293)
T ss_pred             HHHHHHHHhcCCC--cCHHHHHHHHH----HhhhccccChhHHHHHHHHHHHHHhhHhhhcccHHHheeccccCCHH-HH
Confidence            3455655554343  46899999998    45667899999999999999999999999999999999999999998 99


Q ss_pred             HHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCC--CCccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          252 MGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET--ETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       252 l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~--~~~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      +..+.+.+||||||+.++++++.|+++.|||++.+..+  ...++++ .||.++||++..+...|+.|+.++.|||+|+|
T Consensus        92 l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~~~F~i~~l-LRPav~VPESKrvd~lLkeFR~~RnHMAIViD  170 (293)
T COG4535          92 LDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDAEPFDIKEL-LRPAVVVPESKRVDRLLKEFRSQRNHMAIVID  170 (293)
T ss_pred             HHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCCcccccHHHh-cccceecccchhHHHHHHHHHhhcCceEEEEe
Confidence            99999999999999999999999999999999976543  2456664 89999999999999999999999999999999


Q ss_pred             cCCCccCCCCCCCCCcccccccCCCCCCCCcccccccccCCCceEeeccCCCccccccccCCCC-CCCCCcccccc-ccC
Q 013310          330 AKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQ-RSDSTTNGLIY-ASE  407 (445)
Q Consensus       330 e~G~~~Giv~~T~~di~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~~~~~~~~~~~~-~~~~tl~g~~~-~~~  407 (445)
                      |||++.|+|  |.+||++.|+|++.++.......-+.+.....|.|..-++|.++|..|+.... ++.+|+|||.. .++
T Consensus       171 EfGgVsGLV--TIEDiLEqIVGdIEDE~Deee~~dI~~ls~~~~~VrALT~IedFNe~F~t~FsDeevDTIGGLVm~afG  248 (293)
T COG4535         171 EFGGVSGLV--TIEDILEQIVGDIEDEYDEEEDADIRQLSRHTWRVRALTEIEDFNEAFGTHFSDEEVDTIGGLVMQAFG  248 (293)
T ss_pred             ccCCeeeeE--EHHHHHHHHhcccccccchhhhhhhHhhcCCceEEEecccHHHHHHHhcCCCChhhhhhhhHHHHHHhc
Confidence            999999999  99999999999999998776555578889999999999999999999998655 45999999999 888


Q ss_pred             CCCC
Q 013310          408 DIED  411 (445)
Q Consensus       408 ~~e~  411 (445)
                      +.|.
T Consensus       249 hLP~  252 (293)
T COG4535         249 HLPA  252 (293)
T ss_pred             cCCC
Confidence            8886

>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]

Probab=99.96  E-value=9.4e-30  Score=264.28  Aligned_cols=314  Identities=54%  Similarity=0.803  Sum_probs=266.5

Q ss_pred             CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCchhHH-HHHHHHHHHHhhhHHHHHHHHHHHH
Q 013310           27 GIPFGSVWWFVYAGISCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPSEKK-QAAAIFPVVQKQHQLLVTLLLCNAA  105 (445)
Q Consensus        27 ~~~~~s~~w~~~~~i~~~ll~lsafFs~~E~Al~s~~~~~l~~~~~~g~~~~~~-~a~~~~~l~~~~~~~l~tili~n~~  105 (445)
                      ..|...-+|+.++.++++|++++++|||.+.++++.+...++.+.+.|....++ .++++....++.+.+++|++++|.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~l~~~~~~~sgltlglm~~~~~~l~~l~~s~~~~~~~~~~a~i~~~~k~~~~lL~tlll~n~~   83 (498)
T KOG2118|consen    4 AIPKTGSFMPVTFEIIIILVLLLGLMSGLTLGLMSLTEVELEVLRKSGEVNEKKLIAAAIFPVRKNLHDLLVTLLLCNSI   83 (498)
T ss_pred             cccccchhhhHHHHHHHHHHHHHHHhhhcchhheechhhhhHHHhccCCccchhhhhhhhcccccccceeeehheehhhh
Confidence            345555666677777888999999999999999999999999999999877665 6777888899999999999999999


Q ss_pred             HHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCc
Q 013310          106 SMEA-LPIYLDKLFNQYVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVLGHNE  184 (445)
Q Consensus       106 ~~~~-~~~~~~~~~~~~~a~~~~t~lilvfgEiiPK~la~~~~~~ia~~~a~~~~~~~~~~~P~~~~~~~~~~~~~~~~~  184 (445)
                      ++.+ +..++.....+|.++.+++..+++|||++|++++.+|...+...+.|+.++++++++|+.||+++. ++.+|..-
T Consensus        84 ~~e~~L~i~~~~~~~~~~a~~is~~~i~~~geIipq~vc~~~gl~vga~~~~~~~i~~~l~~PI~~p~~~~-d~~lg~~~  162 (498)
T KOG2118|consen   84 ATEAVLPFFLDAESGESGALRISVTEILIFGEIIPQSVCVKYGLAVGANLVPLVRILSFLCLPIAYPFSKL-DTALGLNL  162 (498)
T ss_pred             ccccccceeecccccccceEecceeeeeecccccchHHHhhhcccccccceehHHHHHHHhhhhheehhhh-hhhhcccc
Confidence            9888 666665666667788899999999999999999999999999999999999999999999999988 77777654


Q ss_pred             -ccccHHHHHHHHHHhhhhhccCCCCCHHHHHHHHHhhcCcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEE
Q 013310          185 -ALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRV  263 (445)
Q Consensus       185 -~~~s~eEl~~li~~~~~e~~~~g~l~~~E~~~l~~~~~l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~  263 (445)
                       ..+.+.+++.++..+..|+.+ |.+..+|..++.+++++.++.++|+|+|-.++..++.+..+.++....+.++||||+
T Consensus       163 ~~~~~~~~l~~lv~~~~~e~~~-g~~~~~e~~ii~g~l~l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sri  241 (498)
T KOG2118|consen  163 GEFLKRASLLALVQLVGNEAGK-GDLTYDELTIITGALELTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRI  241 (498)
T ss_pred             ccchhhHHHHHHHHHHhccccc-CcccchhhhHhhhhHHHHHHHHHHhccchhhheeeccccccchHHHhhHhhcCccee
Confidence             345567888999877766655 889999999999999999999999999999999999999998677788889999999


Q ss_pred             EeEeCCCCCEEEEEEhhhhhccC----CCCCCccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEccCCCccCCCC
Q 013310          264 PVYSGNPKNIIGLLLVKSLLTVR----PETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPP  339 (445)
Q Consensus       264 PV~~~~~~~ivGiv~~kDll~~~----~~~~~~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Giv~  339 (445)
                      ||++.+..+.+|.+-...+++..    .....++.+.+.++.+.+|++++..+.++.|++.+.|++.|.+ .....|++ 
T Consensus       242 pv~~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~v~~~~~~~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~-~~~~~~~~-  319 (498)
T KOG2118|consen  242 PVYEQEPKNKIGGLLVMNLLRLLQVEVPLEPLPVSESALLRLPLVPENMPLLDLLNEFQKGKSHMAVVRN-GHVDIFVL-  319 (498)
T ss_pred             eeccCcccchhhHHHHhhhhhhhccccccccccchhhhccccccCCCcccHHHHHHHHhhhhceeEEEec-CCcceeeE-
Confidence            99998777778776666666654    3344677788889999999999999999999999999999886 33334444 


Q ss_pred             CCCCCc
Q 013310          340 MTDGKK  345 (445)
Q Consensus       340 ~T~~di  345 (445)
                       |.+|+
T Consensus       320 -~l~~~  324 (498)
T KOG2118|consen  320 -TLEDL  324 (498)
T ss_pred             -eccch
Confidence             44444

>PF01595 DUF21: Domain of unknown function DUF21; InterPro: IPR002550 This transmembrane region has no known function

Probab=99.95  E-value=6.3e-27  Score=214.71  Aligned_cols=167  Identities=27%  Similarity=0.474  Sum_probs=143.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH-
Q 013310           39 AGISCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCNAASMEALPIYLDKL-  117 (445)
Q Consensus        39 ~~i~~~ll~lsafFs~~E~Al~s~~~~~l~~~~~~g~~~~~~~a~~~~~l~~~~~~~l~tili~n~~~~~~~~~~~~~~-  117 (445)
                      ++++++++++||||||+|+|++++++.+++.++++|+    ++++++.++++||+++++|++++|++++.+.+.+.... 
T Consensus         3 l~~~~~ll~~~~~fs~~e~Al~~l~~~~l~~~~~~~~----~~a~~~~~l~~~~~~~l~t~~~~~~~~~~~~~~l~~~~~   78 (183)
T PF01595_consen    3 LLLALLLLLLSAFFSAAETALFSLSRSRLEELAEEGD----KRARRLLKLLERPERLLSTILLGNTLSNVLAGVLATVLA   78 (183)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCC----HHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4667778899999999999999999999999999988    36889999999999999999999999988766543322 


Q ss_pred             ---HH----HHHHHHHHHHHHHhhhccchhhHHHhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhh---CCC---c
Q 013310          118 ---FN----QYVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVL---GHN---E  184 (445)
Q Consensus       118 ---~~----~~~a~~~~t~lilvfgEiiPK~la~~~~~~ia~~~a~~~~~~~~~~~P~~~~~~~~~~~~~---~~~---~  184 (445)
                         ++    .+++++++++++++|||++||++|.+||++++.+.++++++++++++|+++++.++.+++.   |.+   +
T Consensus        79 ~~~~~~~~~~~~~~~~~~~l~lif~e~lPk~l~~~~~~~~~~~~a~~l~~~~~l~~P~~~~l~~i~~~~~~~~~~~~~~~  158 (183)
T PF01595_consen   79 SNLFGPWWALLIAFLIITLLILIFGEILPKALARRHPEKIALRLAPLLRVLMILLYPLVWLLSFISNKILKLFGIENEED  158 (183)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccc
Confidence               32    2355677788899999999999999999999999999999999999999999999888753   433   2


Q ss_pred             ccccHHHHHHHHHHhhhhhccCCCCCHHH
Q 013310          185 ALFRRAQLKALVTIHSQEAGKGGELTHDE  213 (445)
Q Consensus       185 ~~~s~eEl~~li~~~~~e~~~~g~l~~~E  213 (445)
                      ..+|+|||+.+++    +++++|.++++|
T Consensus       159 ~~~s~eel~~lv~----~~~e~G~i~~~E  183 (183)
T PF01595_consen  159 PAVSEEELRSLVE----EGEEEGVIEEEE  183 (183)
T ss_pred             CCCCHHHHHHHHH----hHHHCCCCCCCC
Confidence            6789999999999    566789998876

Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Q54318 from SWISSPROT that does not contain this domain. This domain is found in the N terminus of the proteins adjacent to two intracellular CBS domains (IPR000644 from INTERPRO).

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=99.71  E-value=8.1e-16  Score=145.03  Aligned_cols=136  Identities=15%  Similarity=0.278  Sum_probs=112.2

Q ss_pred             cccHHHHHHHHHHhhhhhccCCCCCHHHHHHHHHh-------hcCcccccccccccCCceEEeeCCCCccHHHHHHHHHc
Q 013310          186 LFRRAQLKALVTIHSQEAGKGGELTHDETTIISGA-------LDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILAR  258 (445)
Q Consensus       186 ~~s~eEl~~li~~~~~e~~~~g~l~~~E~~~l~~~-------~~l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~  258 (445)
                      .++.+|+.+.++.    -.|-=.++.++-+.+.+-       -++.+.++.|||++  ++++++.+++++ ++.+.+.+|
T Consensus       202 gfs~~Dld~aL~~----~~E~lDIdrddLe~llr~~elqa~~R~~~~LtcadIMSr--dVvtv~~~ts~d-hA~~ll~~H  274 (382)
T COG3448         202 GFSSEDLDAALQR----LGETLDIDRDDLERLLRETELQALRRRMGELTCADIMSR--DVVTVSTDTSID-HARKLLQEH  274 (382)
T ss_pred             CCCHHHHHHHHHh----cCceecCCHHHHHHHHHHHHHHHHHHHhccccHHHhcCc--cceecCCcCChH-HHHHHHHHc
Confidence            4788888888862    223445666654444332       23578899999996  899999999998 999999999


Q ss_pred             CCcEEEeEeCCCCCEEEEEEhhhhhccCCC---------CCCccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          259 GHSRVPVYSGNPKNIIGLLLVKSLLTVRPE---------TETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       259 ~~s~~PV~~~~~~~ivGiv~~kDll~~~~~---------~~~~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      ++..+||.|++ .+++|+|+.+|+++....         .+.+++.+|..++.++.++++..+++..|.+.+.|.+||+|
T Consensus       275 ~ikaLPV~d~~-~rl~GiVt~~dl~~~a~~~p~qrlr~~~~~~vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld  353 (382)
T COG3448         275 RIKALPVLDEH-RRLVGIVTQRDLLKHARPSPFQRLRFLRPPTVKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLD  353 (382)
T ss_pred             Ccccccccccc-cceeeeeeHHHHhhccCcchHHHhhccCCCcccccccCcceeecCCCcHHHHHHHhhcCCcceeeEEc
Confidence            99999999976 799999999999873211         24678999999999999999999999999999999999999

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=99.68  E-value=8.3e-17  Score=149.24  Aligned_cols=107  Identities=16%  Similarity=0.289  Sum_probs=98.2

Q ss_pred             HHhhcCcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCC--CCcccc
Q 013310          218 SGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET--ETPVSA  295 (445)
Q Consensus       218 ~~~~~l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~--~~~v~~  295 (445)
                      ..+.+..+.+|+++|++  ++.++.+|.|+. |+.+.+.+++++..||+|+  |+++|+++..|+..+..++  +.+|++
T Consensus       164 ~~m~siPk~~V~~~~s~--~~i~v~~d~tl~-eaak~f~~~~i~GaPVvd~--dk~vGiit~~dI~~aia~g~~~~kV~~  238 (294)
T COG2524         164 SKMVSIPKEKVKNLMSK--KLITVRPDDTLR-EAAKLFYEKGIRGAPVVDD--DKIVGIITLSDIAKAIANGNLDAKVSD  238 (294)
T ss_pred             eeeeecCcchhhhhccC--CceEecCCccHH-HHHHHHHHcCccCCceecC--CceEEEEEHHHHHHHHHcCCccccHHH
Confidence            45566788999999996  789999999998 9999999999999999987  5999999999999877664  478999


Q ss_pred             ccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          296 VSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       296 im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      +|.++++++.+|+.+.||++.|.++++..++|+|
T Consensus       239 ~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~d  272 (294)
T COG2524         239 YMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTD  272 (294)
T ss_pred             HhccCCceEcCchhHHHHHHHHHhcCcceEEEEc
Confidence            9999999999999999999999999999999999

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=99.67  E-value=5.1e-16  Score=161.65  Aligned_cols=134  Identities=16%  Similarity=0.153  Sum_probs=113.6

Q ss_pred             cccHHHHHHHHHHhhhhhccC------CCCCHHHHHHHHHhhcCcccccccccccCCceEEeeCCCCccHHHHHHHHH--
Q 013310          186 LFRRAQLKALVTIHSQEAGKG------GELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILA--  257 (445)
Q Consensus       186 ~~s~eEl~~li~~~~~e~~~~------g~l~~~E~~~l~~~~~l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~--  257 (445)
                      .++.+|+..+++.    ..++      +.++++|++.+++++++++.+|+++|++  ++++++.+.++. ++++.+++  
T Consensus        89 ~l~~dd~~~ll~~----l~~~~~~~lL~~l~~~er~~i~~ll~~~e~tvg~iMt~--~~~~v~~~~tv~-eal~~l~~~~  161 (449)
T TIGR00400        89 EMNLDDVIDLLEE----VPANVVQQLLASSTEEERKAINLLLSYSDDSAGRIMTI--EYVELKEDYTVG-KALDYIRRVA  161 (449)
T ss_pred             cCChhHHHHHHHh----CCHHHHHHHHHcCCHHHHHHHHHHhCCCcchHHHhCcC--ceEEECCCCcHH-HHHHHHHhcC
Confidence            5678888888873    3333      4799999999999999999999999985  789999999998 99999975  


Q ss_pred             ---cCCcEEEeEeCCCCCEEEEEEhhhhhccCCCCCCccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          258 ---RGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       258 ---~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                         ++...+||+|++ ++++|+++.+|++...  ++.+++++|.++++++++++++.++++.|++++.+.+||+|
T Consensus       162 ~~~~~~~~v~Vvd~~-~~l~GvV~l~dLl~a~--~~~~v~~im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD  233 (449)
T TIGR00400       162 KTKEDIYTLYVTNES-KHLKGVLSIRDLILAK--PEEILSSIMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVD  233 (449)
T ss_pred             CCccceeEEEEECCC-CeEEEEEEHHHHhcCC--CCCcHHHHhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEc
Confidence               233455666654 7899999999998653  34679999888888999999999999999999999999999

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=99.60  E-value=7.8e-15  Score=152.59  Aligned_cols=150  Identities=15%  Similarity=0.250  Sum_probs=128.9

Q ss_pred             ccccHHHHHHHHHHhhhhhccCCCCCH-----HHHHHHHHhhcCcccccccccccCCceEEeeCCCCccHHHHHHHHHcC
Q 013310          185 ALFRRAQLKALVTIHSQEAGKGGELTH-----DETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARG  259 (445)
Q Consensus       185 ~~~s~eEl~~li~~~~~e~~~~g~l~~-----~E~~~l~~~~~l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~  259 (445)
                      ..+|++|+..++..    ....|.++.     +|++++++++++++.     |.+  ++++++++.++. ++++.|.+++
T Consensus        43 dtvTe~ema~~ma~----~gg~GvI~~n~~~e~q~~~V~~Vk~~~~~-----~~~--~~vtl~~~~tv~-eal~~m~~~~  110 (450)
T TIGR01302        43 DTVTESRMAIAMAR----EGGIGVIHRNMSIEEQAEQVKRVKRAENG-----IIS--DPVTISPETTVA-DVLELMERKG  110 (450)
T ss_pred             CccCHHHHHHHHHh----cCCCceeecCCCHHHHHHHHhhhccccCc-----eec--CceEeCCCCCHH-HHHHHHHHcC
Confidence            46899999999873    334688884     899999999877664     553  578899999998 9999999999


Q ss_pred             CcEEEeEeCCC--CCEEEEEEhhhhhccCCCCCCccccccc-cCCceeCCCCCHHHHHHHHhhCCCeEEEEEccCCCccC
Q 013310          260 HSRVPVYSGNP--KNIIGLLLVKSLLTVRPETETPVSAVSI-RRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKT  336 (445)
Q Consensus       260 ~s~~PV~~~~~--~~ivGiv~~kDll~~~~~~~~~v~~im~-~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~G  336 (445)
                      ++++||++++.  ++++|+|+.+|++... ....+++++|. .+++++++++++.++++.|++++.+.+||+|++|.+.|
T Consensus       111 ~s~lpVvd~~~~~~~lvGIVt~rDL~~~~-~~~~~V~dvm~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvG  189 (450)
T TIGR01302       111 ISGIPVVEDGDMTGKLVGIITKRDIRFVK-DKGKPVSEVMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVG  189 (450)
T ss_pred             CCEEEEEeCCCCCCeEEEEEEHHHHhhhh-cCCCCHHHhhCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEE
Confidence            99999998753  6899999999997643 23467889987 48999999999999999999999999999999999999


Q ss_pred             CCCCCCCCccccc
Q 013310          337 LPPMTDGKKPKLN  349 (445)
Q Consensus       337 iv~~T~~di~~~i  349 (445)
                      +|  |.+|+++++
T Consensus       190 iV--T~~DIl~~~  200 (450)
T TIGR01302       190 LI--TMKDIVKRR  200 (450)
T ss_pred             EE--EhHHhhhcc
Confidence            99  999999876

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=99.59  E-value=5.8e-15  Score=151.73  Aligned_cols=130  Identities=18%  Similarity=0.150  Sum_probs=109.1

Q ss_pred             CCCcccccccc--CCceeCCCCCHHHHHHHHhhCCCeEEEEEccC-CCccCCCCCCCCCcccccccCCCCCCCCcccccc
Q 013310          289 TETPVSAVSIR--RIPRVPSDMPLYDILNEFQKGSSHMAAVVKAK-GKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSK  365 (445)
Q Consensus       289 ~~~~v~~im~~--~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~-G~~~Giv~~T~~di~~~i~~~~~~~~~~~~~~~~  365 (445)
                      ++.+++++|++  ++.+++.++++.++++.+.+++.+..||+++. ++++|++  +.+|++....+    +.     ...
T Consensus       189 ~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv--~~kDll~~~~~----~~-----~~l  257 (408)
T TIGR03520       189 GNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVL--YIKDLLPHLNK----KN-----FDW  257 (408)
T ss_pred             CCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEE--EHHHHHhHhcc----CC-----CCH
Confidence            34688999975  68899999999999999999999999999864 6899999  99999854321    10     011


Q ss_pred             cccCCCceEeeccCCCccccccccCCCCCCCCCccccccccCCCCCCceEEEeehhhHHHHHhcCccCCCCccc
Q 013310          366 QDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELLQEEIVDETDEY  439 (445)
Q Consensus       366 ~~~~~~~~~v~~~~~i~~~~~~~~~~~~~~~~tl~g~~~~~~~~e~g~l~GIVT~~Dile~l~g~ei~de~d~~  439 (445)
                      .+.-...+.|++++++.++.+.|+....+++.++|         |||+++||||.+||+|+++| ||.||+|.+
T Consensus       258 ~~~~~~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvD---------E~G~~~GiVT~eDileeivg-ei~de~d~~  321 (408)
T TIGR03520       258 QSLLREPYFVPENKKLDDLLRDFQEKKNHLAIVVD---------EYGGTSGLVTLEDIIEEIVG-DISDEFDDE  321 (408)
T ss_pred             HHHcCCCeEeCCCCcHHHHHHHHHhcCceEEEEEc---------CCCCEEEEEEHHHHHHHHhC-CCCCcCCcC
Confidence            12223568999999999999999999999999999         99999999999999999998 999998854

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=99.57  E-value=1.2e-14  Score=140.26  Aligned_cols=105  Identities=22%  Similarity=0.347  Sum_probs=95.8

Q ss_pred             hcCcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCCCCccccccccC
Q 013310          221 LDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRR  300 (445)
Q Consensus       221 ~~l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~im~~~  300 (445)
                      +.-+=.+|.|+|+|..+..++..+++++ +..+...+.||+||||+|.. .+++|+|+.||+....+  +.++..+|.+.
T Consensus       183 IKkdI~~Vedi~~P~~~~~yL~~~d~v~-d~~~l~~kt~~sRfPVvn~~-~kvvGvVt~rDv~~~~~--~t~ieKVMtkn  258 (432)
T COG4109         183 IKKDIITVEDIMTPLEDTSYLRETDTVE-DWLDLVEKTGHSRFPVVNRS-MKVVGVVTMRDVLDKKP--STTIEKVMTKN  258 (432)
T ss_pred             hhhheeeHHHhccccccceeccccccHH-HHHHHHHHcCCCccceeccc-ceEEEEEEehhhhcCCC--CccHHHHhccC
Confidence            3344578999999999999999999998 99999999999999999976 78999999999987643  57888999999


Q ss_pred             CceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          301 IPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       301 ~~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      +.+|.+.+++..+.+.|...+..+.||+|
T Consensus       259 p~tv~~~tsVAsvaq~MiwE~iem~PVv~  287 (432)
T COG4109         259 PITVRAKTSVASVAQMMIWEGIEMLPVVD  287 (432)
T ss_pred             CeeecccchHHHHHHHHHhccceeeeEEc
Confidence            99999999999999999999999999999

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=99.53  E-value=8e-14  Score=144.44  Aligned_cols=130  Identities=17%  Similarity=0.098  Sum_probs=110.5

Q ss_pred             CCccccccc--cCCceeCCCCCHHHHHHHHhhCCCeEEEEEc-cCCCccCCCCCCCCCcccccccCCCCCCCCccccccc
Q 013310          290 ETPVSAVSI--RRIPRVPSDMPLYDILNEFQKGSSHMAAVVK-AKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQ  366 (445)
Q Consensus       290 ~~~v~~im~--~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd-e~G~~~Giv~~T~~di~~~i~~~~~~~~~~~~~~~~~  366 (445)
                      +.+++++|+  .++.+++.+.++.++.+.+.+++.+..||++ .-++++|++  ..+|++........ ...      ..
T Consensus       205 ~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv--~~Kdll~~~~~~~~-~~~------~~  275 (429)
T COG1253         205 DRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIV--HVKDLLRALLDGQS-DLD------LR  275 (429)
T ss_pred             CcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEE--EHHHHHHHHhcCcc-ccc------hh
Confidence            367888885  4677899999999999999999999999999 778899999  99999987764432 100      01


Q ss_pred             ccCCCceEeeccCCCccccccccCCCCCCCCCccccccccCCCCCCceEEEeehhhHHHHHhcCccCCCCcc
Q 013310          367 DEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELLQEEIVDETDE  438 (445)
Q Consensus       367 ~~~~~~~~v~~~~~i~~~~~~~~~~~~~~~~tl~g~~~~~~~~e~g~l~GIVT~~Dile~l~g~ei~de~d~  438 (445)
                      ..-...+.|++++++.++.+.|+....+++.++|         |||++.|+||++||+|+++| ||.||+|.
T Consensus       276 ~~~~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvD---------EyG~~~GlVTleDIiEeIvG-ei~de~d~  337 (429)
T COG1253         276 VLVRPPLFVPETLSLSDLLEEFREERTHMAIVVD---------EYGGVEGLVTLEDIIEEIVG-EIPDEHDE  337 (429)
T ss_pred             hcccCCeEecCCCcHHHHHHHHHHhCCeEEEEEE---------cCCCeEEEeEHHHHHHHHhC-CCcCcccc
Confidence            1122778999999999999999999999999999         99999999999999999998 99999986

>PRK11573 hypothetical protein; Provisional

Probab=99.51  E-value=7.5e-14  Score=143.59  Aligned_cols=133  Identities=14%  Similarity=0.221  Sum_probs=107.7

Q ss_pred             CCccccccc--cCCceeCCCCCHHHHHHHHhhCCCeEEEEEccC-CCccCCCCCCCCCcccccccCCCCCCCCccccccc
Q 013310          290 ETPVSAVSI--RRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAK-GKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQ  366 (445)
Q Consensus       290 ~~~v~~im~--~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~-G~~~Giv~~T~~di~~~i~~~~~~~~~~~~~~~~~  366 (445)
                      +.+++++|+  .++..++.++++.++++.+.+++.+..||+++. ++++|++  ..+|++......   ...  +.....
T Consensus       186 ~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv--~~kDll~~~~~~---~~~--~~~~l~  258 (413)
T PRK11573        186 KVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISML--RVREAYRLMTEK---KEF--TKENML  258 (413)
T ss_pred             CCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEE--EHHHHHHHhhcc---CcC--CHHHHH
Confidence            467889985  567789999999999999999999999998654 7899999  888887533211   000  000111


Q ss_pred             ccCCCceEeeccCCCccccccccCCCCCCCCCccccccccCCCCCCceEEEeehhhHHHHHhcCccCCCCccc
Q 013310          367 DEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELLQEEIVDETDEY  439 (445)
Q Consensus       367 ~~~~~~~~v~~~~~i~~~~~~~~~~~~~~~~tl~g~~~~~~~~e~g~l~GIVT~~Dile~l~g~ei~de~d~~  439 (445)
                      +.....+.|++++++.++.+.|+.+..+++.++|         |||++.||||++||+|+++| ||.||+|++
T Consensus       259 ~~~r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvD---------EyG~~~GiVTleDilEeivG-ei~de~d~~  321 (413)
T PRK11573        259 RAADEIYFVPEGTPLSTQLVKFQRNKKKVGLVVD---------EYGDIQGLVTVEDILEEIVG-DFTTSMSPT  321 (413)
T ss_pred             hhccCCeEeCCCCcHHHHHHHHHhcCCeEEEEEe---------cCCCeEEEeeHHHHHHHHhC-CCCcccCcc
Confidence            2234578899999999999999999999999999         99999999999999999998 999998853

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=99.47  E-value=6.3e-13  Score=139.76  Aligned_cols=150  Identities=21%  Similarity=0.296  Sum_probs=126.8

Q ss_pred             ccccHHHHHHHHHHhhhhhccCCCCC-----HHHHHHHHHhhcCcccccccccccCCceEEeeCCCCccHHHHHHHHHcC
Q 013310          185 ALFRRAQLKALVTIHSQEAGKGGELT-----HDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARG  259 (445)
Q Consensus       185 ~~~s~eEl~~li~~~~~e~~~~g~l~-----~~E~~~l~~~~~l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~  259 (445)
                      ...|++|+...+.    +....|.|.     ++++++++++.+     ++++|.+  ++++++++.++. ++++.|.+++
T Consensus        50 ~~vT~~ela~ava----~~GglG~i~~~~~~e~~~~~I~~vk~-----~~dim~~--~~v~i~~~~tv~-ea~~~m~~~~  117 (486)
T PRK05567         50 DTVTEARMAIAMA----REGGIGVIHKNMSIEEQAEEVRKVKR-----SESGVVT--DPVTVTPDTTLA-EALALMARYG  117 (486)
T ss_pred             CCcCHHHHHHHHH----hCCCCCEecCCCCHHHHHHHHHHhhh-----hhhcccC--CCeEeCCCCCHH-HHHHHHHHhC
Confidence            4578999999986    344557777     477889988855     5667764  688899999998 9999999999


Q ss_pred             CcEEEeEeCCCCCEEEEEEhhhhhccCCCCCCccccccc-cCCceeCCCCCHHHHHHHHhhCCCeEEEEEccCCCccCCC
Q 013310          260 HSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSI-RRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLP  338 (445)
Q Consensus       260 ~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~im~-~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Giv  338 (445)
                      ++++||++++ ++++|+|+.+|+.... ....++.++|. ++++++++++++.++++.|.+++.+.+||+|++|.+.|+|
T Consensus       118 ~~~lpVvd~~-g~lvGiVt~~DL~~~~-~~~~~V~dim~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiI  195 (486)
T PRK05567        118 ISGVPVVDEN-GKLVGIITNRDVRFET-DLSQPVSEVMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLI  195 (486)
T ss_pred             CCEEEEEccC-CEEEEEEEHHHhhhcc-cCCCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEE
Confidence            9999999864 8999999999997543 23467889987 7889999999999999999999999999999999999999


Q ss_pred             CCCCCCcccccc
Q 013310          339 PMTDGKKPKLNE  350 (445)
Q Consensus       339 ~~T~~di~~~i~  350 (445)
                        |.+|+++...
T Consensus       196 --T~~DLl~~~~  205 (486)
T PRK05567        196 --TVKDIEKAEE  205 (486)
T ss_pred             --EhHHhhhhhh
Confidence              8888887653

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=99.46  E-value=6.7e-13  Score=111.04  Aligned_cols=91  Identities=27%  Similarity=0.390  Sum_probs=79.5

Q ss_pred             ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCC--CCccccccccCCceeCCCCCHHHHH
Q 013310          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET--ETPVSAVSIRRIPRVPSDMPLYDIL  314 (445)
Q Consensus       237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~--~~~v~~im~~~~~~V~~~~~l~~al  314 (445)
                      ++.+++.+.++. ++++.|.+++++++||++++ ++++|+++.+|+.+...+.  +.++.++|..++.++++++++.+++
T Consensus         2 ~~~~v~~~~~l~-~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~al   79 (111)
T cd04603           2 QTVSVNCENPLR-EAIKMINELGARAVVVVDEE-NKVLGQVTLSDLLEIGPNDYETLKVCEVYIVPVPIVYCDSKVTDLL   79 (111)
T ss_pred             ceEEeCCCCcHH-HHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHhhccccccccChhheeecCCcEECCCCcHHHHH
Confidence            456789999998 99999999999999999864 7899999999998643221  2568899988889999999999999


Q ss_pred             HHHhhCCCeEEEEEc
Q 013310          315 NEFQKGSSHMAAVVK  329 (445)
Q Consensus       315 ~~m~~~~~~~a~Vvd  329 (445)
                      +.|.+++.+.+||+|
T Consensus        80 ~~m~~~~~~~lpVvd   94 (111)
T cd04603          80 RIFRETEPPVVAVVD   94 (111)
T ss_pred             HHHHHcCCCeEEEEc
Confidence            999999999999999

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=99.44  E-value=3.9e-13  Score=134.62  Aligned_cols=104  Identities=16%  Similarity=0.111  Sum_probs=90.1

Q ss_pred             cccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCC----CCCcccccccc
Q 013310          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE----TETPVSAVSIR  299 (445)
Q Consensus       224 ~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~----~~~~v~~im~~  299 (445)
                      ...+|+|+|++.++++++++++++. ++++.|.+++++.+||++++ ++++|+|+.+|+.+....    .+.++.++|.+
T Consensus       200 ~~~~V~dim~~~~~~~~v~~~~sl~-~a~~~~~~~~~~~~vVvd~~-g~lvGivt~~Dl~~~~~~~~~~~~~~v~~im~~  277 (326)
T PRK10892        200 LLLRVSDIMHTGDEIPHVSKTASLR-DALLEITRKNLGMTVICDDN-MKIEGIFTDGDLRRVFDMGIDLRQASIADVMTP  277 (326)
T ss_pred             ccCcHHHHhCCCCCCeEECCCCCHH-HHHHHHHhcCCCeEEEEcCC-CcEEEEEecHHHHHHHhcCCCcccCCHHHhcCC
Confidence            5678999998644788999999998 99999998888888888754 799999999998764332    23579999999


Q ss_pred             CCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          300 RIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       300 ~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      ++.++++++++.++++.|.+++.+.+||+|
T Consensus       278 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~  307 (326)
T PRK10892        278 GGIRVRPGILAVDALNLMQSRHITSVLVAD  307 (326)
T ss_pred             CCEEECCCCCHHHHHHHHHHCCCcEEEEee
Confidence            999999999999999999999999999997

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.43  E-value=1e-12  Score=107.93  Aligned_cols=80  Identities=14%  Similarity=0.345  Sum_probs=71.5

Q ss_pred             ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCCCCccccccccCCceeCCCCCHHHHHHH
Q 013310          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNE  316 (445)
Q Consensus       237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~im~~~~~~V~~~~~l~~al~~  316 (445)
                      +++++++++++. ++.+.|.+++++.+||++++.++++|+++.+|+.+...             +.++++++++.++++.
T Consensus         2 ~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~~-------------~~~v~~~~~l~~a~~~   67 (98)
T cd04618           2 KLVVFDTKLPVK-KAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR-------------LVSIHPERSLFDAALL   67 (98)
T ss_pred             eEEEECCCCcHH-HHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhee-------------eEEeCCCCcHHHHHHH
Confidence            578899999998 99999999999999999864478999999999876321             6789999999999999


Q ss_pred             HhhCCCeEEEEEcc
Q 013310          317 FQKGSSHMAAVVKA  330 (445)
Q Consensus       317 m~~~~~~~a~Vvde  330 (445)
                      |.+++.+.+||+|+
T Consensus        68 m~~~~~~~lpVvd~   81 (98)
T cd04618          68 LLKNKIHRLPVIDP   81 (98)
T ss_pred             HHHCCCCEeeEEEC
Confidence            99999999999994

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.42  E-value=1.6e-12  Score=110.18  Aligned_cols=91  Identities=15%  Similarity=0.223  Sum_probs=74.9

Q ss_pred             ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCCC-----Cccc------cccccCCceeC
Q 013310          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETE-----TPVS------AVSIRRIPRVP  305 (445)
Q Consensus       237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~-----~~v~------~im~~~~~~V~  305 (445)
                      ++.+++++.++. ++++.|.+++++++||++++ ++++|+++.+|++....++.     .++.      +.|..++.+++
T Consensus         2 ~~~~i~~~~~l~-~a~~~~~~~~~~~~pVv~~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   79 (120)
T cd04641           2 NIATARPDTPLI-DVLDMLVERRVSALPIVDEN-GKVVDVYSRFDVINLAKEGAYNNLDLTVGEALERRSQDFEGVRTCS   79 (120)
T ss_pred             CcEEEcCCCCHH-HHHHHHHHcCCCeeeEECCC-CeEEEEEeHHHHHHHHhcCccccccCCHHHHHhhcccCCCCCeEEc
Confidence            567899999998 99999999999999999864 88999999999986432211     1122      22335577899


Q ss_pred             CCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          306 SDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       306 ~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      +++++.++++.|.+++.+.+||+|
T Consensus        80 ~~~~l~~~~~~m~~~~~~~l~Vvd  103 (120)
T cd04641          80 PDDCLRTIFDLIVKARVHRLVVVD  103 (120)
T ss_pred             CCCcHHHHHHHHHhcCccEEEEEC
Confidence            999999999999999999999999

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=99.41  E-value=1.7e-12  Score=107.78  Aligned_cols=91  Identities=12%  Similarity=0.258  Sum_probs=80.1

Q ss_pred             ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCCCCccccccccCCceeCCCCCHHHHHHH
Q 013310          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNE  316 (445)
Q Consensus       237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~im~~~~~~V~~~~~l~~al~~  316 (445)
                      ++.+++++.++. ++++.+.+++++++||++++ ++++|+++.+|+++....+..++.++|.+++.++++++++.++++.
T Consensus         3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~   80 (110)
T cd04605           3 PVVTISEDASIK-EAAKLMIEENINHLPVVDED-GRLVGIVTSWDISKAVARDKKSVEDIMTRNVITATPDEPIDVAARK   80 (110)
T ss_pred             CCEEECCCCCHH-HHHHHHHhCCCceEEEECCC-CcEEEEEeHHHHHHHHhhCccCHHHhcCCCCeEECCCCcHHHHHHH
Confidence            567889999998 99999999999999999865 8999999999998654333346888888889999999999999999


Q ss_pred             HhhCCCeEEEEEc
Q 013310          317 FQKGSSHMAAVVK  329 (445)
Q Consensus       317 m~~~~~~~a~Vvd  329 (445)
                      |.+++.+.+||+|
T Consensus        81 ~~~~~~~~~~Vv~   93 (110)
T cd04605          81 MERHNISALPVVD   93 (110)
T ss_pred             HHHhCCCEEeEEC
Confidence            9999999999998

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=99.40  E-value=7.9e-13  Score=114.42  Aligned_cols=99  Identities=20%  Similarity=0.278  Sum_probs=82.7

Q ss_pred             cccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCC-----CCccccccc
Q 013310          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET-----ETPVSAVSI  298 (445)
Q Consensus       224 ~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~-----~~~v~~im~  298 (445)
                      ..++++.+|+.  +++++.++++++ ++++.|.++|+|.+||+++  |+++|-++..++.+...++     +..++++|-
T Consensus        63 ~~ita~~iM~s--pvv~v~pdDsi~-~vv~lM~~~g~SQlPVi~~--~k~VGsItE~~iv~~~le~~e~i~~~~vr~vM~  137 (187)
T COG3620          63 TRITAKTIMHS--PVVSVSPDDSIS-DVVNLMRDKGISQLPVIEE--DKVVGSITENDIVRALLEGMESIRSLRVREVMG  137 (187)
T ss_pred             ceEeHhhhccC--CeeEECchhhHH-HHHHHHHHcCCccCceeeC--CeeeeeecHHHHHHHHhccccchhhhhHHHHhc
Confidence            34688999984  799999999999 9999999999999999986  7999999999998875432     367899999


Q ss_pred             cCCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          299 RRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       299 ~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      .++++|++++++...-+.+..+  +.+.|++
T Consensus       138 e~fP~Vs~~~~l~vI~~LL~~~--~AVlV~e  166 (187)
T COG3620         138 EPFPTVSPDESLNVISQLLEEH--PAVLVVE  166 (187)
T ss_pred             CCCCcCCCCCCHHHHHHHHhhC--CeEEEEe
Confidence            9999999999997776666554  4455554

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.39  E-value=2.8e-12  Score=107.76  Aligned_cols=90  Identities=20%  Similarity=0.213  Sum_probs=79.3

Q ss_pred             eEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCC-----CCCCccccccccCCceeCCCCCHHH
Q 013310          238 TFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP-----ETETPVSAVSIRRIPRVPSDMPLYD  312 (445)
Q Consensus       238 vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~-----~~~~~v~~im~~~~~~V~~~~~l~~  312 (445)
                      +.++++++++. ++++.|.++++..+||++++ ++++|+++.+|+.+...     ....++.++|.+++.++++++++.+
T Consensus         3 ~~~v~~~~~l~-~a~~~~~~~~~~~~~Vvd~~-g~~~G~vt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~   80 (114)
T cd04619           3 LAKIDVNATLQ-RAAKILGEPGIDLVVVCDPH-GKLAGVLTKTDVVRQMGRCGGPGCTAPVENVMTRAVVSCRPGDLLHD   80 (114)
T ss_pred             eEEECCCCcHH-HHHHHHHhcCCCEEEEECCC-CCEEEEEehHHHHHHHhhcCCCcccCCHHHHhcCCCeeECCCCCHHH
Confidence            56788999998 99999999999999999865 78999999999886432     1235788888888999999999999


Q ss_pred             HHHHHhhCCCeEEEEEc
Q 013310          313 ILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       313 al~~m~~~~~~~a~Vvd  329 (445)
                      +++.|.+++.+.+||+|
T Consensus        81 a~~~m~~~~~~~lpVvd   97 (114)
T cd04619          81 VWQVMKQRGLKNIPVVD   97 (114)
T ss_pred             HHHHHHHcCCCeEEEEC
Confidence            99999999999999999

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.38  E-value=3.6e-12  Score=106.87  Aligned_cols=92  Identities=16%  Similarity=0.215  Sum_probs=79.1

Q ss_pred             ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCC-----CCCCccccccccCCceeCCCCCHH
Q 013310          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP-----ETETPVSAVSIRRIPRVPSDMPLY  311 (445)
Q Consensus       237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~-----~~~~~v~~im~~~~~~V~~~~~l~  311 (445)
                      ++.+++++.++. ++++.|.+++++.+||++++.++++|+++.+|+++...     ....++.++|.++++++++++++.
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~   80 (114)
T cd04630           2 NVVTIDGLATVA-EALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGRDPDRVNVYEIMTKPLISVSPDMDIK   80 (114)
T ss_pred             CcEEECCCCcHH-HHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCCCCCccCHHHHhcCCCeeECCCCCHH
Confidence            567899999998 99999999999999999864368999999999986321     122568888888889999999999


Q ss_pred             HHHHHHhhCCCeEEEEEc
Q 013310          312 DILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       312 ~al~~m~~~~~~~a~Vvd  329 (445)
                      ++++.|.+++.+.+||+|
T Consensus        81 ~~~~~~~~~~~~~~~Vvd   98 (114)
T cd04630          81 YCARLMERTNIRRAPVVE   98 (114)
T ss_pred             HHHHHHHHcCCCEeeEee
Confidence            999999999999999998

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=99.38  E-value=1.3e-12  Score=130.45  Aligned_cols=103  Identities=17%  Similarity=0.135  Sum_probs=89.2

Q ss_pred             ccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCC---CCCccccccccCC
Q 013310          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE---TETPVSAVSIRRI  301 (445)
Q Consensus       225 ~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~---~~~~v~~im~~~~  301 (445)
                      ..+|+++|.+..+++++++++++. ++.+.|.+++.+.+||++++ ++++|+|+.+|+.+....   .+.++.++|.+++
T Consensus       196 ~~~V~~im~~~~~~~~v~~~~sv~-~a~~~~~~~~~~~~~Vvd~~-g~~iG~vt~~dl~~~~~~~~~~~~~v~~im~~~~  273 (321)
T PRK11543        196 LNKVHHLMRRDDAIPQVALTASVM-DAMLELSRTGLGLVAVCDAQ-QQVQGVFTDGDLRRWLVGGGALTTPVNEAMTRGG  273 (321)
T ss_pred             HhHHHHHhccCCCCcEeCCCCCHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEecHHHHHHHHhCCCCcCCcHHHhcCCCC
Confidence            468999998632388999999998 99999999999999999875 799999999998754321   2356889998999


Q ss_pred             ceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          302 PRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       302 ~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      .++++++++.++++.|.+++...+||+|
T Consensus       274 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd  301 (321)
T PRK11543        274 TTLQAQSRAIDAKEILMKRKITAAPVVD  301 (321)
T ss_pred             EEECCCCCHHHHHHHHHHcCCCEEEEEc
Confidence            9999999999999999999999999999

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.37  E-value=3.9e-12  Score=105.80  Aligned_cols=91  Identities=15%  Similarity=0.243  Sum_probs=79.1

Q ss_pred             ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCC-----CCccccccccCCceeCCCCCHH
Q 013310          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET-----ETPVSAVSIRRIPRVPSDMPLY  311 (445)
Q Consensus       237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~-----~~~v~~im~~~~~~V~~~~~l~  311 (445)
                      ++.+++.+.++. ++++.+.+++++++||++++ ++++|+++.+|+++.....     ..++.++|.+++.++++++++.
T Consensus         2 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~   79 (113)
T cd04623           2 DVITVRPDATVA-EAAKLMAEKNIGAVVVVDDG-GRLVGIFSERDIVRKVALRGASALDTPVSEIMTRNVITVTPDDTVD   79 (113)
T ss_pred             CCEEECCCCcHH-HHHHHHHHcCCCeEEEECCC-CCEEEEEehHHHHHHHhhcCCCccccCHHHhcCCCcEEECCCCcHH
Confidence            466789999998 99999999999999999875 7999999999998643321     3468888878889999999999


Q ss_pred             HHHHHHhhCCCeEEEEEc
Q 013310          312 DILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       312 ~al~~m~~~~~~~a~Vvd  329 (445)
                      ++++.|.+++.+.+||+|
T Consensus        80 ~~l~~~~~~~~~~~~Vv~   97 (113)
T cd04623          80 EAMALMTERRFRHLPVVD   97 (113)
T ss_pred             HHHHHHHHcCCCEeEEEe
Confidence            999999999999999998

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=99.37  E-value=3.8e-12  Score=108.01  Aligned_cols=91  Identities=19%  Similarity=0.370  Sum_probs=79.4

Q ss_pred             ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCC--------------CCccccccccCCc
Q 013310          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET--------------ETPVSAVSIRRIP  302 (445)
Q Consensus       237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~--------------~~~v~~im~~~~~  302 (445)
                      ++.+++.+.++. ++.+.|.+++++++||++++ ++++|+++.+|++......              ..++.++|.+++.
T Consensus         3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   80 (124)
T cd04600           3 DVVTVTPDTSLE-EAWALLRRHRIKALPVVDGD-RRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGDIMSPPVV   80 (124)
T ss_pred             CcEEeCCCCCHH-HHHHHHHHcCCceeeEECCC-CCEEEEEEHHHHHhhhcccccchhhhhhhcccccccHHHhccCCCe
Confidence            567889999998 99999999999999999875 7899999999997643321              2367888888899


Q ss_pred             eeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          303 RVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       303 ~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      ++++++++.++++.|.+++.+.+||+|
T Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~~Vv~  107 (124)
T cd04600          81 TVRPDTPIAELVPLLADGGHHHVPVVD  107 (124)
T ss_pred             eeCCCCcHHHHHHHHHhcCCCceeEEc
Confidence            999999999999999999999999999

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.37  E-value=2.8e-12  Score=106.77  Aligned_cols=91  Identities=14%  Similarity=0.203  Sum_probs=79.3

Q ss_pred             ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCC---CCccccccccCCceeCCCCCHHHH
Q 013310          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET---ETPVSAVSIRRIPRVPSDMPLYDI  313 (445)
Q Consensus       237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~---~~~v~~im~~~~~~V~~~~~l~~a  313 (445)
                      ++..++.+.+++ ++++.+.+++++++||++++ ++++|+++.+|+.......   +.++.++|.+++.++++++++.++
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~   79 (111)
T cd04626           2 DFPTIDEDASIR-EALHEMLKYNTNEIIVKDNE-EKLKGVVTFTDILDLDLFESFLEKKVFNIVSQDVFYVNEEDTIDEA   79 (111)
T ss_pred             CceEECCCccHH-HHHHHHHHhCCCeEEEEcCC-CCEEEEEehHHhHHHHhhcccccCcHHHHhcCCcEEEcCCCcHHHH
Confidence            466789999998 99999999999999999865 7899999999998653321   346788888888999999999999


Q ss_pred             HHHHhhCCCeEEEEEc
Q 013310          314 LNEFQKGSSHMAAVVK  329 (445)
Q Consensus       314 l~~m~~~~~~~a~Vvd  329 (445)
                      ++.|.+++.+.+||+|
T Consensus        80 ~~~~~~~~~~~~~Vv~   95 (111)
T cd04626          80 LDIMREKQIGRLPVVD   95 (111)
T ss_pred             HHHHHHcCCCeeeEeE
Confidence            9999999999999998

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=99.37  E-value=1.1e-12  Score=128.10  Aligned_cols=166  Identities=18%  Similarity=0.228  Sum_probs=130.5

Q ss_pred             HHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCCCCccccccc--cCCceeCCCCCHHHHHHHHhhCCCeEEEE
Q 013310          250 EAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSI--RRIPRVPSDMPLYDILNEFQKGSSHMAAV  327 (445)
Q Consensus       250 e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~im~--~~~~~V~~~~~l~~al~~m~~~~~~~a~V  327 (445)
                      |.++.+....++..|++..+.+.+.|++..++         .+|+|+|+  ..+..++.+++..+..+++.+......||
T Consensus       168 EElR~~v~~~~~e~~~~~~~rdmL~gvLDLe~---------~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRipl  238 (423)
T COG4536         168 EELRTAVNESGSEGSVNKIDRDMLLGVLDLEN---------LTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPL  238 (423)
T ss_pred             HHHHHHHHHhhcccccccccHHHHhccccccc---------ceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceee
Confidence            66888888888999998756678889988765         56889986  45667999999999999999876666666


Q ss_pred             E-ccCCCccCCCCCCCCCcccccccCCCCCCCCcccccccccCCCceEeeccCCCccccccccCCCCCCCCCcccccccc
Q 013310          328 V-KAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYAS  406 (445)
Q Consensus       328 v-de~G~~~Giv~~T~~di~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~~~~~~~~~~~~~~~~tl~g~~~~~  406 (445)
                      . |.-++++|++  ..+|+++.....-.+..     .-....-.++|.||+..++.+-...|..+..+-+.++|      
T Consensus       239 yr~~~DnIiGvl--h~r~llr~l~e~~~~~k-----~d~~~~a~epyFVPe~Tpl~~QL~~F~~~k~hialVVD------  305 (423)
T COG4536         239 YRDDLDNIIGVL--HVRDLLRLLNEKNEFTK-----EDILRAADEPYFVPEGTPLSDQLVAFQRNKKHIALVVD------  305 (423)
T ss_pred             ecCChhHhhhhh--hHHHHHHHhhccCcccH-----hHHHHHhcCCeecCCCCcHHHHHHHHHHhcceEEEEEe------
Confidence            4 6667799999  77777766643321111     01123346789999999999988999998888888889      


Q ss_pred             CCCCCCceEEEeehhhHHHHHhcCccCCCCccccc
Q 013310          407 EDIEDGEVIGIITLEDVFEELLQEEIVDETDEYVD  441 (445)
Q Consensus       407 ~~~e~g~l~GIVT~~Dile~l~g~ei~de~d~~~~  441 (445)
                         |||.+.|+||.|||+||++| |+.||+|...+
T Consensus       306 ---EYG~i~GLVTLEDIlEEIVG-dftde~d~~~~  336 (423)
T COG4536         306 ---EYGDIQGLVTLEDILEEIVG-DFTDEHDTLAK  336 (423)
T ss_pred             ---ccCcEEeeeeHHHHHHHHhc-cccccCcccch
Confidence               99999999999999999998 99999885443

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=99.37  E-value=4.3e-12  Score=105.33  Aligned_cols=89  Identities=18%  Similarity=0.218  Sum_probs=79.4

Q ss_pred             ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCCCCccccccccCCceeCCCCCHHHHHHH
Q 013310          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNE  316 (445)
Q Consensus       237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~im~~~~~~V~~~~~l~~al~~  316 (445)
                      ++.+++++++++ ++.+.+.+++++++||++++ ++++|+++.+|++...  .+.++.++|..++.++++++++.++++.
T Consensus         3 ~~~~~~~~~~~~-~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~--~~~~v~~~~~~~~~~v~~~~~l~~~~~~   78 (108)
T cd04596           3 DTGYLTTTDTVK-DWHELNKETGHSRFPVVDEK-NKVVGIVTSKDVAGKD--PDTTIEKVMTKNPITVNPKTSVASVAHM   78 (108)
T ss_pred             ccEEeCCCCCHH-HHHHHHHHcCCCceeEECCC-CeEEEEecHHHHhccc--ccccHHHHhcCCCeEECCCCCHHHHHHH
Confidence            577889999998 99999999999999999864 7899999999998642  2457888888888999999999999999


Q ss_pred             HhhCCCeEEEEEc
Q 013310          317 FQKGSSHMAAVVK  329 (445)
Q Consensus       317 m~~~~~~~a~Vvd  329 (445)
                      |.+++.+.+||+|
T Consensus        79 ~~~~~~~~~~Vv~   91 (108)
T cd04596          79 MIWEGIEMLPVVD   91 (108)
T ss_pred             HHHcCCCeeeEEc
Confidence            9999999999999

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=99.37  E-value=3.6e-12  Score=106.02  Aligned_cols=91  Identities=42%  Similarity=0.631  Sum_probs=77.3

Q ss_pred             ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCCC--CccccccccCCceeCCCCCHHHHH
Q 013310          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETE--TPVSAVSIRRIPRVPSDMPLYDIL  314 (445)
Q Consensus       237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~--~~v~~im~~~~~~V~~~~~l~~al  314 (445)
                      ++++++.+.++. ++++.|.+.+++.+||++++.++++|+++.+|+.+....+.  .++.++ ++++.++++++++.+++
T Consensus         2 ~~~~i~~~~~i~-~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~-~~~~~~v~~~~~l~~~~   79 (111)
T cd04590           2 DIVALDADDTLE-EILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGEEDLDLRDL-LRPPLFVPESTPLDDLL   79 (111)
T ss_pred             ceEEEcCCCCHH-HHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcCCCcCCHHHH-hcCCeecCCCCcHHHHH
Confidence            577899999998 99999999999999999864368999999999987543222  345654 56788999999999999


Q ss_pred             HHHhhCCCeEEEEEc
Q 013310          315 NEFQKGSSHMAAVVK  329 (445)
Q Consensus       315 ~~m~~~~~~~a~Vvd  329 (445)
                      +.|.+++.+.+||+|
T Consensus        80 ~~~~~~~~~~~~Vv~   94 (111)
T cd04590          80 EEMRKERSHMAIVVD   94 (111)
T ss_pred             HHHHhcCCcEEEEEE
Confidence            999999999999999

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.35  E-value=6.5e-12  Score=107.42  Aligned_cols=91  Identities=16%  Similarity=0.236  Sum_probs=76.2

Q ss_pred             ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCCCC----c-------------ccccccc
Q 013310          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETET----P-------------VSAVSIR  299 (445)
Q Consensus       237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~~----~-------------v~~im~~  299 (445)
                      ++++++++.++. ++++.|.+++++.+||++++ ++++|+++.+|+++...++..    +             ..+.|.+
T Consensus         2 ~~~~v~~~~~~~-~a~~~~~~~~~~~i~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (126)
T cd04642           2 KVVSIDSDERVL-DAFKLMRKNNISGLPVVDEK-GKLIGNISASDLKGLLLSPDDLLLYRTITFKELSEKFTDSDGVKSR   79 (126)
T ss_pred             CeEEECCCccHH-HHHHHHHHhCCCcccEECCC-CcEEEEEEHHHhhhhhcCcchhhcccchhhhhhhhhcccccccccC
Confidence            567899999998 99999999999999999875 899999999999875432111    0             1234567


Q ss_pred             CCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          300 RIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       300 ~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      ++.++++++++.++++.|.+++.+.+||+|
T Consensus        80 ~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd  109 (126)
T cd04642          80 PLITCTPSSTLKEVITKLVANKVHRVWVVD  109 (126)
T ss_pred             CCeEECCCCcHHHHHHHHHHhCCcEEEEEC
Confidence            788999999999999999999999999999

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=99.35  E-value=6e-12  Score=105.58  Aligned_cols=90  Identities=20%  Similarity=0.298  Sum_probs=78.1

Q ss_pred             eEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCC----CCccccccccCCceeCCCCCHHHH
Q 013310          238 TFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET----ETPVSAVSIRRIPRVPSDMPLYDI  313 (445)
Q Consensus       238 vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~----~~~v~~im~~~~~~V~~~~~l~~a  313 (445)
                      +..+++++++. ++.+.|.+.+++++||++++ ++++|+++.+|+.....+.    ..++.++|.++++++++++++.++
T Consensus         3 ~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~   80 (115)
T cd04593           3 PPVLSATTPLR-EAAEQLIESKHGSALVVDRD-GGVVGIITLPDLLRALEADEAGEPSAVDEVATPPLLTVHPDEPLAHA   80 (115)
T ss_pred             CcEeCCCCCHH-HHHHHHHhCCCcEEEEEcCC-CCEEEEEEHHHHHHHHhcccccccccHHHhccCCceEECCCCCHHHH
Confidence            45788999998 99999999999999999875 7999999999998653321    234778888889999999999999


Q ss_pred             HHHHhhCCCeEEEEEc
Q 013310          314 LNEFQKGSSHMAAVVK  329 (445)
Q Consensus       314 l~~m~~~~~~~a~Vvd  329 (445)
                      ++.|.+++.+.+||+|
T Consensus        81 l~~~~~~~~~~~~Vvd   96 (115)
T cd04593          81 LDRMASRGLRQLPVVD   96 (115)
T ss_pred             HHHHHHcCCceeeEEe
Confidence            9999999999999998

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.34  E-value=7.1e-12  Score=104.37  Aligned_cols=91  Identities=20%  Similarity=0.305  Sum_probs=78.7

Q ss_pred             ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCC---CCCccccccccCCceeCCCCCHHHH
Q 013310          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE---TETPVSAVSIRRIPRVPSDMPLYDI  313 (445)
Q Consensus       237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~---~~~~v~~im~~~~~~V~~~~~l~~a  313 (445)
                      ++..++.+.++. ++.+.|.+.+++++||++++ ++++|+++.+|+++....   ...++.++|.++++.+++++++.++
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~   79 (112)
T cd04624           2 PVVTVDPDTSIR-EAAKLMAEENVGSVVVVDPD-ERPIGIVTERDIVRAVAAGIDLDTPVSEIMTRDLVTVDPDEPVAEA   79 (112)
T ss_pred             CCeEECCCCcHH-HHHHHHHHcCCCEEEEECCC-CCEEEEeeHHHHHHHHhccCCCccCHHHhccCCCEEECCCCcHHHH
Confidence            356788999998 99999999999999999875 799999999999765332   2256778888888999999999999


Q ss_pred             HHHHhhCCCeEEEEEc
Q 013310          314 LNEFQKGSSHMAAVVK  329 (445)
Q Consensus       314 l~~m~~~~~~~a~Vvd  329 (445)
                      ++.|.+++...+||+|
T Consensus        80 ~~~~~~~~~~~~~Vv~   95 (112)
T cd04624          80 AKLMRKNNIRHHLVVD   95 (112)
T ss_pred             HHHHHHcCccEEEEEc
Confidence            9999999999999998

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.34  E-value=5.6e-12  Score=107.17  Aligned_cols=92  Identities=16%  Similarity=0.276  Sum_probs=79.1

Q ss_pred             ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCC---------------CCccccccccCC
Q 013310          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET---------------ETPVSAVSIRRI  301 (445)
Q Consensus       237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~---------------~~~v~~im~~~~  301 (445)
                      ++.+++++.++. ++++.+.+++++.+||++++.++++|+++.+|++....+.               ..++.++|.+++
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (125)
T cd04631           2 DVVTVPPTTPIM-EAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRSIMTRNV   80 (125)
T ss_pred             CceEeCCCCcHH-HHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHHHhcCCc
Confidence            466789999998 9999999999999999987447899999999998643321               236778887889


Q ss_pred             ceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          302 PRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       302 ~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      +++++++++.++++.|.+.+.+.+||+|
T Consensus        81 ~~v~~~~~l~~~~~~~~~~~~~~~~V~~  108 (125)
T cd04631          81 ITITPDDSIKDAAELMLEKRVGGLPVVD  108 (125)
T ss_pred             eEeCCCCcHHHHHHHHHHcCCceEEEEc
Confidence            9999999999999999999999999998

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.34  E-value=6.3e-12  Score=131.04  Aligned_cols=118  Identities=15%  Similarity=0.192  Sum_probs=99.9

Q ss_pred             cccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCCCCccccccccCCce
Q 013310          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPR  303 (445)
Q Consensus       224 ~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~im~~~~~~  303 (445)
                      +..+++++|++  +++++++++++. ++++.|.+++++.+||+|++ ++++|+|+.+|+....  ...++.++|.+++++
T Consensus        87 ~~VKv~~iMi~--~pvtv~~d~tv~-eA~~~m~~~~~s~l~VVD~~-gklvGIVT~rDL~~~~--~~~~V~diMt~~~it  160 (479)
T PRK07807         87 AWVKSRDLVFD--TPVTLSPDDTVG-DALALLPKRAHGAVVVVDEE-GRPVGVVTEADCAGVD--RFTQVRDVMSTDLVT  160 (479)
T ss_pred             hhccccccccc--CCeEECCCCCHH-HHHHHHHhcCCceEEEECCC-CeEEEEEeHHHHhcCc--cCCCHHHhccCCceE
Confidence            35678899975  688999999998 99999999999999999864 7899999999986542  236799999999999


Q ss_pred             eCCCCCHHHHHHHHhhCCCeEEEEEccCCCccCCCCCCCCCccccc
Q 013310          304 VPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLN  349 (445)
Q Consensus       304 V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Giv~~T~~di~~~i  349 (445)
                      +++++++.++++.|.+++.+.+||+|+.|.++|+|  |.+||++..
T Consensus       161 V~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGII--T~~DIl~~~  204 (479)
T PRK07807        161 LPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVL--TRTGALRAT  204 (479)
T ss_pred             ECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEE--EHHHHHHHh
Confidence            99999999999999999999999999666666666  666665443

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.34  E-value=6e-12  Score=104.64  Aligned_cols=91  Identities=29%  Similarity=0.451  Sum_probs=79.0

Q ss_pred             ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCC--CCCccccccccCCceeCCCCCHHHHH
Q 013310          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE--TETPVSAVSIRRIPRVPSDMPLYDIL  314 (445)
Q Consensus       237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~--~~~~v~~im~~~~~~V~~~~~l~~al  314 (445)
                      ++.+++.++++. ++++.+.+.+++++||++++ ++++|+++.+|+.+....  .+.++.++|.++++++++++++.+++
T Consensus         2 ~~~~v~~~~~i~-e~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~   79 (111)
T cd04639           2 HFETLSPADTLD-DAADALLATTQHEFPVVDGD-GHLVGLLTRDDLIRALAEGGPDAPVRGVMRRDFPTVSPSATLDAVL   79 (111)
T ss_pred             CceEcCCCCcHH-HHHHHHHHcCCCcceEECCC-CcEEEEeeHHHHHHHHHhcCCCCcHHHHhcCCCcEECCCCcHHHHH
Confidence            456788999998 99999988899999999865 789999999999864322  23578888888999999999999999


Q ss_pred             HHHhhCCCeEEEEEc
Q 013310          315 NEFQKGSSHMAAVVK  329 (445)
Q Consensus       315 ~~m~~~~~~~a~Vvd  329 (445)
                      +.|.+++.+.+||+|
T Consensus        80 ~~~~~~~~~~~~Vv~   94 (111)
T cd04639          80 RLMQQGGAPAVPVVD   94 (111)
T ss_pred             HHHHhcCCceeeEEc
Confidence            999999999999998

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=99.33  E-value=4.5e-12  Score=136.29  Aligned_cols=103  Identities=17%  Similarity=0.224  Sum_probs=89.6

Q ss_pred             CcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCC----CCCccccccc
Q 013310          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE----TETPVSAVSI  298 (445)
Q Consensus       223 l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~----~~~~v~~im~  298 (445)
                      ++..+|+|+|++  +..++++++++. |+.+.+.+++++.+||+|++ ++++|+++.+|+.+...+    ++.++.++|.
T Consensus       444 L~~~~V~dim~~--~~~~v~~~~tl~-ea~~~l~~~~~~~~~VvD~~-g~lvGiVt~~dL~~~l~~~~~~~~~~v~dim~  519 (574)
T PRK01862        444 LRTTQMRELIQP--AQTVVPPTASVA-DMTRVFLEYPVKYLYVVDDD-GRFRGAVALKDITSDLLDKRDTTDKTAADYAH  519 (574)
T ss_pred             HhhCcHHHHhcC--CCceeCCCCCHH-HHHHHHHhCCCceEEEEcCC-CeEEEEEEHHHHHHHhhcccccccchHHHhcc
Confidence            566799999986  467899999998 99999999999999999875 789999999999874211    2356889998


Q ss_pred             cCCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          299 RRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       299 ~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      +++.++++++++.++++.|.+++.+.+||+|
T Consensus       520 ~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd  550 (574)
T PRK01862        520 TPFPLLTPDMPLGDALEHFMAFQGERLPVVE  550 (574)
T ss_pred             CCCeeECCCCCHHHHHHHHHhcCCCeeeeEe
Confidence            8899999999999999999999999999998

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.33  E-value=8e-12  Score=106.30  Aligned_cols=92  Identities=21%  Similarity=0.252  Sum_probs=75.2

Q ss_pred             ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCC--C-----------CccccccccCCce
Q 013310          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET--E-----------TPVSAVSIRRIPR  303 (445)
Q Consensus       237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~--~-----------~~v~~im~~~~~~  303 (445)
                      ++.+++.++++. ++++.|.+++++++||++++.++++|+++.+|+++....+  .           ..+.++|..++.+
T Consensus         2 ~~~~v~~~~~i~-~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (123)
T cd04627           2 PFIPVPSTASLF-QAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFPGLDPLYPIPLRDLTIGTSDVIS   80 (123)
T ss_pred             CceecCCCCCHH-HHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhccchhhhhhhhhhhcccCcCCceE
Confidence            366789999998 9999999999999999986436899999999987642211  0           1112356778889


Q ss_pred             eCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          304 VPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       304 V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      +++++++.++++.|.+++.+.+||+|
T Consensus        81 v~~~~~l~~a~~~m~~~~~~~lpVvd  106 (123)
T cd04627          81 INGDQPLIDALHLMHNEGISSVAVVD  106 (123)
T ss_pred             eCCCCCHHHHHHHHHHcCCceEEEEC
Confidence            99999999999999999999999999

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.32  E-value=1.1e-11  Score=103.85  Aligned_cols=89  Identities=18%  Similarity=0.229  Sum_probs=75.9

Q ss_pred             ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCC---------CCccccccccCCceeCCC
Q 013310          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET---------ETPVSAVSIRRIPRVPSD  307 (445)
Q Consensus       237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~---------~~~v~~im~~~~~~V~~~  307 (445)
                      ++++++.++++. ++++.|.+++++.+||++++ ++++|+++.+|+++.....         +.++.++|..++.+++++
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~   79 (116)
T cd04643           2 EVAYVQDTNTLR-HALLVLTKHGYSAIPVLDKE-GKYVGTISLTDILWKLKGLENLDLERLVDLKVIDVMNTDVPVIIDD   79 (116)
T ss_pred             CcEEECCCCcHH-HHHHHHHHCCCceeeeECCC-CcEEEEEeHHHHHHHhhccCchhHHHHhCCcHHHHhcCCCceecCC
Confidence            577899999998 99999999999999999864 7899999999998754321         346788888889999999


Q ss_pred             CCHHHHHHHHhhCCCeEEEEEc
Q 013310          308 MPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       308 ~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      +++.++++.|.+.+  .+||+|
T Consensus        80 ~~l~~a~~~~~~~~--~~~Vv~   99 (116)
T cd04643          80 ADIEEILHLLIDQP--FLPVVD   99 (116)
T ss_pred             CCHHHHHHHHhcCC--ceeEEe
Confidence            99999999998764  589998

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.32  E-value=1.6e-11  Score=101.12  Aligned_cols=88  Identities=11%  Similarity=0.088  Sum_probs=76.6

Q ss_pred             ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCCCCccccccccCCceeCCCCCHHHHHHH
Q 013310          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNE  316 (445)
Q Consensus       237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~im~~~~~~V~~~~~l~~al~~  316 (445)
                      ++.+++++.++. ++++.|.+++++.+||++++ ++++|+++.+|+.+...   .++.++|.+++..+++++++.++++.
T Consensus         2 ~~~~v~~~~~~~-~a~~~~~~~~~~~~~v~d~~-g~~~Giv~~~dl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (106)
T cd04582           2 EPITVRPDDPLS-DALGLMDDSDLRALTVVDAD-GQPLGFVTRREAARASG---GCCGDHAEPFKVTVSVDDDLRIVLSR   76 (106)
T ss_pred             CCcEecCCCcHH-HHHHHHHhcCCCEEEEECCC-CCEEEEEeHHHHHHhcc---cchhhhcccCCEEECCCCCHHHHHHH
Confidence            466788999998 99999999999999999864 79999999999987532   34778877777789999999999999


Q ss_pred             HhhCCCeEEEEEc
Q 013310          317 FQKGSSHMAAVVK  329 (445)
Q Consensus       317 m~~~~~~~a~Vvd  329 (445)
                      |.+++.+.+||+|
T Consensus        77 ~~~~~~~~~~Vv~   89 (106)
T cd04582          77 MFAHDMSWLPCVD   89 (106)
T ss_pred             HHHCCCCeeeEEC
Confidence            9999999999999

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.32  E-value=9e-12  Score=105.27  Aligned_cols=92  Identities=14%  Similarity=0.246  Sum_probs=78.0

Q ss_pred             ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCC----CCCcccccccc--CCceeCCCCCH
Q 013310          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE----TETPVSAVSIR--RIPRVPSDMPL  310 (445)
Q Consensus       237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~----~~~~v~~im~~--~~~~V~~~~~l  310 (445)
                      ++.+++++.++. ++++.|.+++.+.+||++++ ++++|+++.+|+.+....    ...++.++|.+  +++++++++++
T Consensus         2 ~~~~~~~~~~~~-~a~~~~~~~~~~~~~V~d~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l   79 (118)
T cd04617           2 PPVVVRENTSVY-DAIVTLFLEDVGSLFVVDED-GDLVGVVSRKDLLKASIGGADLQKVPVGVIMTRMPNITTTTPEESV   79 (118)
T ss_pred             CCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHHHHHcCCCccCCCHHHHhCCCCCcEEECCCCcH
Confidence            456889999998 99999999999999999865 789999999998875421    13456777764  67899999999


Q ss_pred             HHHHHHHhhCCCeEEEEEcc
Q 013310          311 YDILNEFQKGSSHMAAVVKA  330 (445)
Q Consensus       311 ~~al~~m~~~~~~~a~Vvde  330 (445)
                      .++++.|.+++.+.+||+|+
T Consensus        80 ~~~~~~~~~~~~~~lpVvd~   99 (118)
T cd04617          80 LEAAKKLIEHQVDSLPVVEK   99 (118)
T ss_pred             HHHHHHHHHcCCCEeeEEeC
Confidence            99999999999999999983

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.31  E-value=1.1e-11  Score=107.94  Aligned_cols=91  Identities=15%  Similarity=0.151  Sum_probs=79.1

Q ss_pred             ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCC---------------------------
Q 013310          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET---------------------------  289 (445)
Q Consensus       237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~---------------------------  289 (445)
                      +++++++++++. ++++.|.+++++.+||++++ ++++|+++.+|+++.....                           
T Consensus         2 ~~~~v~~~~~~~-~a~~~~~~~~~~~l~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (135)
T cd04621           2 DIATVHPEHSLL-HVVDEMEKNGVGRVIVVDDN-GKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEV   79 (135)
T ss_pred             CceEeCCCCcHH-HHHHHHHHcCCCcceEECCC-CCEEEEEeHHHHHHHhhcccccccchhhhhhhhhcccccccccccc
Confidence            466789999998 99999999999999999865 8999999999998754211                           


Q ss_pred             CCccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          290 ETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       290 ~~~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      +.++.++|..++.++++++++.++++.|.+++.+.+||+|
T Consensus        80 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~  119 (135)
T cd04621          80 PLVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVD  119 (135)
T ss_pred             cccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEe
Confidence            2468888888888999999999999999999999999998

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=99.31  E-value=1.9e-11  Score=125.67  Aligned_cols=116  Identities=22%  Similarity=0.259  Sum_probs=103.5

Q ss_pred             CCCHHHHHHHHHhhcCcccccccccccCCceEEeeCCCCccHHHHHHHHHcC-----CcEEEeEeCCCCCEEEEEEhhhh
Q 013310          208 ELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARG-----HSRVPVYSGNPKNIIGLLLVKSL  282 (445)
Q Consensus       208 ~l~~~E~~~l~~~~~l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~-----~s~~PV~~~~~~~ivGiv~~kDl  282 (445)
                      .+++++++.++..+.+.+.+++.+|+.  ++++++.+.|+. ++++++++.+     ...+.|+|++ ++++|+++.+++
T Consensus       114 ~l~~~~r~~v~~~l~y~e~taG~~Mt~--e~v~l~~~~Tv~-~al~~ir~~~~~~e~~~~lyVvD~~-~~L~Gvvsl~~L  189 (451)
T COG2239         114 LLDPEERARVRQLLSYPEDTAGRIMTT--EFVTLPEDVTVD-EALDRIRERAEDAETIYYLYVVDEK-GKLLGVVSLRDL  189 (451)
T ss_pred             hCCHHHHHHHHHhcCCChhhhhcccee--eeEEeccCcCHH-HHHHHHHHhcccccccceEEEECCc-cceEEEeeHHHH
Confidence            578999999999999999999999995  899999999998 9999998544     3456677765 689999999999


Q ss_pred             hccCCCCCCccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          283 LTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       283 l~~~~~~~~~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      +...  ++.+++++|.+.+++|+++++.+++.+.|++++.-.+||||
T Consensus       190 l~a~--~~~~i~~im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd  234 (451)
T COG2239         190 LTAE--PDELLKDLMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVD  234 (451)
T ss_pred             hcCC--cHhHHHHHhcccceeecccCCHHHHHHHHHHhCCeecceEC
Confidence            9753  35789999988899999999999999999999999999999

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.31  E-value=1.4e-11  Score=104.31  Aligned_cols=91  Identities=21%  Similarity=0.311  Sum_probs=78.9

Q ss_pred             ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCC-------------CCCccccccccCCce
Q 013310          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE-------------TETPVSAVSIRRIPR  303 (445)
Q Consensus       237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~-------------~~~~v~~im~~~~~~  303 (445)
                      ++.++++++++. ++.+.|.+.+++++||++++ ++++|+++.+|+++....             ...++.++|.+++.+
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   79 (122)
T cd04803           2 PVVTLSEDDSLA-DAEELMREHRIRHLPVVNED-GKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAEVMKTDVLT   79 (122)
T ss_pred             CCEEeCCCCcHH-HHHHHHHHcCcccccEECCC-CCEEEEEEHHHHHHHhccccccccccccccccCcCHHHhhCCCCeE
Confidence            456789999998 99999999999999999865 799999999999865321             235677888788899


Q ss_pred             eCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          304 VPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       304 V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      +++++++.++++.|++++.+.+||+|
T Consensus        80 v~~~~~~~~~~~~~~~~~~~~~~Vv~  105 (122)
T cd04803          80 VTPDTPLREAAEIMVENKIGCLPVVD  105 (122)
T ss_pred             eCCCCcHHHHHHHHHHcCCCeEEEEc
Confidence            99999999999999999999999998

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=99.31  E-value=1.7e-11  Score=101.65  Aligned_cols=90  Identities=22%  Similarity=0.331  Sum_probs=78.7

Q ss_pred             ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCC---CCCccccccccCCceeCCCCCHHHH
Q 013310          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE---TETPVSAVSIRRIPRVPSDMPLYDI  313 (445)
Q Consensus       237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~---~~~~v~~im~~~~~~V~~~~~l~~a  313 (445)
                      ++.+++++.++. ++++.|.+++++.+||+++  ++++|+++.+|+.+....   ...++.++|.++++++++++++.++
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~   78 (111)
T cd04611           2 QILTCPPDTSLA-EAASRMRERRISSIVVVDD--GRPLGIVTERDILRLLASGPDLQTPVGEVMSSPLLTVPADTSLYDA   78 (111)
T ss_pred             CceEECCCCcHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEeHHHHHHHHhcCCCCCcCHHHhcCCCceEECCCCCHHHH
Confidence            466789999998 9999999999999999986  789999999999865422   2357888888888999999999999


Q ss_pred             HHHHhhCCCeEEEEEc
Q 013310          314 LNEFQKGSSHMAAVVK  329 (445)
Q Consensus       314 l~~m~~~~~~~a~Vvd  329 (445)
                      ++.|.+.+.+.+||+|
T Consensus        79 l~~~~~~~~~~~~Vv~   94 (111)
T cd04611          79 RQLMREHGIRHLVVVD   94 (111)
T ss_pred             HHHHHHcCCeEEEEEC
Confidence            9999999999999999

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.31  E-value=1.8e-11  Score=101.23  Aligned_cols=90  Identities=17%  Similarity=0.273  Sum_probs=78.8

Q ss_pred             ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCCCCccccccccCCceeCCCCCHHHHHHH
Q 013310          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNE  316 (445)
Q Consensus       237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~im~~~~~~V~~~~~l~~al~~  316 (445)
                      ++..++++.++. ++++.|.++++.++||++++ ++++|+++.+|+..... ...++.++|..++.++++++++.++++.
T Consensus         3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~-~~~~v~~~~~~~~~~v~~~~~~~~~~~~   79 (109)
T cd04583           3 NPVTITPDRTLA-EAIKLMRDKKVDSLLVVDKD-NKLLGIVSLESLEQAYK-EAKSLEDIMLEDVFTVQPDASLRDVLGL   79 (109)
T ss_pred             CCEEECCCCCHH-HHHHHHHHCCCceEEEEcCC-CcEEEEEEHHHHHHHhh-cCCcHhHhhcCCceEECCCCcHHHHHHH
Confidence            456789999998 99999999999999999875 78999999999986532 2356888888888999999999999999


Q ss_pred             HhhCCCeEEEEEc
Q 013310          317 FQKGSSHMAAVVK  329 (445)
Q Consensus       317 m~~~~~~~a~Vvd  329 (445)
                      |.+++.+.+||+|
T Consensus        80 ~~~~~~~~~~vv~   92 (109)
T cd04583          80 VLKRGPKYVPVVD   92 (109)
T ss_pred             HHHcCCceeeEEC
Confidence            9999999999999

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.31  E-value=1.2e-11  Score=102.95  Aligned_cols=91  Identities=15%  Similarity=0.247  Sum_probs=79.4

Q ss_pred             ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCC----CCccccccccCCceeCCCCCHHH
Q 013310          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET----ETPVSAVSIRRIPRVPSDMPLYD  312 (445)
Q Consensus       237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~----~~~v~~im~~~~~~V~~~~~l~~  312 (445)
                      ++++++++.++. ++++.|.+.+++++||++++ ++++|+++.+|+.+...+.    ..++.++|.+++.++++++++.+
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~   79 (114)
T cd04613           2 DVVTIPEDTPLN-ELLDVIAHSPENNFPVVDDD-GRLVGIVSLDDIREILFDPSLYDLVVASDIMTKPPVVVYPEDSLED   79 (114)
T ss_pred             CceeeCCCCcHH-HHHHHHHhCCCcceeEECCC-CCEEEEEEHHHHHHHHhcccccccEEHHHhccCCCcEEcCCCCHHH
Confidence            466789999998 99999999999999999875 7899999999998643221    25688888888999999999999


Q ss_pred             HHHHHhhCCCeEEEEEc
Q 013310          313 ILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       313 al~~m~~~~~~~a~Vvd  329 (445)
                      +++.|++.+.+.+||+|
T Consensus        80 ~~~~~~~~~~~~~~Vv~   96 (114)
T cd04613          80 ALKKFEDSDYEQLPVVD   96 (114)
T ss_pred             HHHHHhhCCccEeeEEe
Confidence            99999999999999998

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=99.30  E-value=6.3e-12  Score=105.25  Aligned_cols=107  Identities=18%  Similarity=0.227  Sum_probs=90.0

Q ss_pred             ceEEeeCCCCccHHHHHHHHHcC-CcEEEeEeCCCCCEEEEEEhhhhhccCCCC--CCcccccccc--CCceeCCCCCHH
Q 013310          237 STFSLDVNSKLDWEAMGKILARG-HSRVPVYSGNPKNIIGLLLVKSLLTVRPET--ETPVSAVSIR--RIPRVPSDMPLY  311 (445)
Q Consensus       237 ~vv~v~~~~sl~~e~l~~~~~~~-~s~~PV~~~~~~~ivGiv~~kDll~~~~~~--~~~v~~im~~--~~~~V~~~~~l~  311 (445)
                      ++.+++++.++. ++++.|.+++ ++.+||++++ ++++|+++.+|++......  +.++.++|..  +++.+++++++.
T Consensus         2 ~~~~~~~~~~l~-~~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~   79 (114)
T cd04801           2 DFPTVPAHLTLR-EFVREYVLGSNQRRFVVVDNE-GRYVGIISLADLRAIPTSQWAQTTVIQVMTPAAKLVTVLSEESLA   79 (114)
T ss_pred             CcceeCCCCCHH-HHHHHHhccCCceeEEEEcCC-CcEEEEEEHHHHHHHHHhhccccchhhhhcccccceEECCCCcHH
Confidence            466789999998 9999887665 8899999864 7899999999998754321  3567888743  356899999999


Q ss_pred             HHHHHHhhCCCeEEEEEccCCCccCCCCCCCCCccc
Q 013310          312 DILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPK  347 (445)
Q Consensus       312 ~al~~m~~~~~~~a~Vvde~G~~~Giv~~T~~di~~  347 (445)
                      ++++.|++++.+.+||+|++|.++|++  |.+|+++
T Consensus        80 ~a~~~~~~~~~~~l~Vv~~~~~~~Gvl--~~~di~~  113 (114)
T cd04801          80 EVLKLLEEQGLDELAVVEDSGQVIGLI--TEADLLR  113 (114)
T ss_pred             HHHHHHHHCCCCeeEEEcCCCcEEEEE--eccceec
Confidence            999999999999999999999999999  8888864

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.30  E-value=7.1e-12  Score=107.40  Aligned_cols=81  Identities=19%  Similarity=0.309  Sum_probs=69.5

Q ss_pred             ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccC----CCCCCccccccccCCceeCCCCCHHH
Q 013310          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR----PETETPVSAVSIRRIPRVPSDMPLYD  312 (445)
Q Consensus       237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~----~~~~~~v~~im~~~~~~V~~~~~l~~  312 (445)
                      ++.+++++.++. ++++.|.+++++.+||++++ ++++|+++.+|++...    ...+.++.++|.+++.++++++++.+
T Consensus         3 ~~~~v~~~~~v~-~a~~~m~~~~~~~~~Vvd~~-~~~~Gii~~~dl~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~~~~   80 (124)
T cd04608           3 APVTVLPTVTCA-EAIEILKEKGFDQLPVVDES-GKILGMVTLGNLLSSLSSGKVQPSDPVSKALYKQFKRVNKNDTLGK   80 (124)
T ss_pred             CCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHHHHHHhccCCCCcHHHHhhccceecCCCCCHHH
Confidence            567899999998 99999999999999999865 7899999999998532    12347899999999999999999999


Q ss_pred             HHHHHhh
Q 013310          313 ILNEFQK  319 (445)
Q Consensus       313 al~~m~~  319 (445)
                      +.+.|..
T Consensus        81 v~~~~~~   87 (124)
T cd04608          81 LSRILET   87 (124)
T ss_pred             HHhhccc
Confidence            9997653

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.29  E-value=1.5e-11  Score=106.12  Aligned_cols=91  Identities=16%  Similarity=0.256  Sum_probs=78.1

Q ss_pred             ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCC----C--------------------Cc
Q 013310          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET----E--------------------TP  292 (445)
Q Consensus       237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~----~--------------------~~  292 (445)
                      ++.++++++++. ++++.+.+.+++++||++++ ++++|+++.+|+++.....    .                    .+
T Consensus         2 ~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~d~~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (132)
T cd04636           2 DVITVKKDDTLR-DVVEILLTGKISGVPVVDNE-GRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKLLGKK   79 (132)
T ss_pred             CCeEeCCCCcHH-HHHHHHHHhCCCccceECCC-CCEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHHcCCC
Confidence            456789999998 99999999999999999875 7999999999997643221    1                    16


Q ss_pred             cccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          293 VSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       293 v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      +.++|.+++.++++++++.++++.|.+++.+.+||+|
T Consensus        80 v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~  116 (132)
T cd04636          80 VEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVD  116 (132)
T ss_pred             HHHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEE
Confidence            7788888889999999999999999999999999999

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.29  E-value=2.2e-11  Score=101.07  Aligned_cols=90  Identities=18%  Similarity=0.249  Sum_probs=78.3

Q ss_pred             ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCC--CCccccccccCCceeCCCCCHHHHH
Q 013310          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET--ETPVSAVSIRRIPRVPSDMPLYDIL  314 (445)
Q Consensus       237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~--~~~v~~im~~~~~~V~~~~~l~~al  314 (445)
                      +++.++.++++. ++++.|.+.+++++||+++  ++++|+++.+|+++....+  ..++.++|.+++.++++++++.+++
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~~l~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~   78 (110)
T cd04588           2 PLITLNPNATLR-EAARLFNTHHIHGAPVVDD--GKLVGIVTLSDIAHAIARGLELAKVKDVMTKDVITIDEDEQLYDAI   78 (110)
T ss_pred             CcEEECCCCCHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHhccccccCHHHHhcCCceEECCCCCHHHHH
Confidence            466788999998 9999999999999999986  7899999999998754332  2467788778889999999999999


Q ss_pred             HHHhhCCCeEEEEEc
Q 013310          315 NEFQKGSSHMAAVVK  329 (445)
Q Consensus       315 ~~m~~~~~~~a~Vvd  329 (445)
                      +.|.+.+.+.+||+|
T Consensus        79 ~~~~~~~~~~~~V~~   93 (110)
T cd04588          79 RLMNKHNVGRLIVTD   93 (110)
T ss_pred             HHHHhcCCCEEEEEC
Confidence            999999999999998

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=99.29  E-value=2.3e-11  Score=101.71  Aligned_cols=90  Identities=17%  Similarity=0.154  Sum_probs=77.2

Q ss_pred             eEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCC---CCCccccccccCCceeCCCCCHHHHH
Q 013310          238 TFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE---TETPVSAVSIRRIPRVPSDMPLYDIL  314 (445)
Q Consensus       238 vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~---~~~~v~~im~~~~~~V~~~~~l~~al  314 (445)
                      .++++.+.++. ++++.|.+.+++.+||++++ ++++|+++.+|+.+....   ...++.++|..++.++++++++.+++
T Consensus         4 ~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~   81 (113)
T cd04607           4 QLLVSPDASIL-DALRKIDKNALRIVLVVDEN-GRLLGTVTDGDIRRALLKGLSLDDPVSEVMNRNPITAKVGSSREEIL   81 (113)
T ss_pred             ceEECCCCCHH-HHHHHHHhcCcCEEEEECCC-CCEEEEEEcHHHHHHHhcCCCcCCCHHHhhcCCCEEEcCCCCHHHHH
Confidence            45688999998 99999998899999999865 789999999998754321   23568888877888999999999999


Q ss_pred             HHHhhCCCeEEEEEc
Q 013310          315 NEFQKGSSHMAAVVK  329 (445)
Q Consensus       315 ~~m~~~~~~~a~Vvd  329 (445)
                      +.|.+++.+.+||+|
T Consensus        82 ~~~~~~~~~~~~Vv~   96 (113)
T cd04607          82 ALMRERSIRHLPILD   96 (113)
T ss_pred             HHHHHCCCCEEEEEC
Confidence            999999999999999

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.29  E-value=1.8e-11  Score=103.50  Aligned_cols=91  Identities=12%  Similarity=0.223  Sum_probs=78.0

Q ss_pred             ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCC-------------CCCCccccccccCCce
Q 013310          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP-------------ETETPVSAVSIRRIPR  303 (445)
Q Consensus       237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~-------------~~~~~v~~im~~~~~~  303 (445)
                      ++.+++++.++. ++++.|.+++++++||++++ ++++|+++.+|+++...             ....++.++|.+++..
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (122)
T cd04635           2 EPVTCTPDDPVS-KVWDLMLESGFTGLPVVQKA-GELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEKIMSTPVYS   79 (122)
T ss_pred             CCEEeCCCCcHH-HHHHHHHHcCCCcccEECCC-CcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHHHhcCCCee
Confidence            467889999998 99999999999999999864 89999999999976321             1234577788788889


Q ss_pred             eCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          304 VPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       304 V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      +++++++.++++.|.+++.+.+||+|
T Consensus        80 v~~~~~l~~~~~~~~~~~~~~~~Vvd  105 (122)
T cd04635          80 VTPDDSIATAVELMLEHDIGRLPVVN  105 (122)
T ss_pred             ECCCCCHHHHHHHHHHcCCCeeeEEc
Confidence            99999999999999999999999999

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=99.28  E-value=2.1e-13  Score=125.17  Aligned_cols=163  Identities=17%  Similarity=0.191  Sum_probs=124.0

Q ss_pred             HHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCCCCccccccc--cCCceeCCCCCHHHHHHHHhhCCCeEEEE
Q 013310          250 EAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSI--RRIPRVPSDMPLYDILNEFQKGSSHMAAV  327 (445)
Q Consensus       250 e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~im~--~~~~~V~~~~~l~~al~~m~~~~~~~a~V  327 (445)
                      |.+..++......+.= .+..+.+-|++...|         ..|+++|+  .+..+++.+.++.+.+..+.+...+..||
T Consensus        36 eLl~liRdse~n~LiD-~dt~~mlEGvm~iad---------l~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPV  105 (293)
T COG4535          36 ELLELIRDSEQNELID-ADTLDMLEGVMDIAD---------LRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPV  105 (293)
T ss_pred             HHHHHHHHhhhccccC-hhHHHHHHHHHHHHH---------hhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCc
Confidence            6667777655444321 122244556666555         35778886  45678999999999999999987777777


Q ss_pred             Ecc-CCCccCCCCCCCCCcccccccCCCCCCCCcccccccccCCCceEeeccCCCccccccccCCCCCCCCCcccccccc
Q 013310          328 VKA-KGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYAS  406 (445)
Q Consensus       328 vde-~G~~~Giv~~T~~di~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~~~~~~~~~~~~~~~~tl~g~~~~~  406 (445)
                      +.| .+.+.||+  ..+|++.........=       -+...-...++||++..+.-+.|.|..+..+|+++++      
T Consensus       106 i~edkD~v~GIL--~AKDLL~~~~~~~~~F-------~i~~lLRPav~VPESKrvd~lLkeFR~~RnHMAIViD------  170 (293)
T COG4535         106 ISEDKDHVEGIL--LAKDLLPFMRSDAEPF-------DIKELLRPAVVVPESKRVDRLLKEFRSQRNHMAIVID------  170 (293)
T ss_pred             ccCCchhhhhhh--hHHHHHHHhcCCcccc-------cHHHhcccceecccchhHHHHHHHHHhhcCceEEEEe------
Confidence            755 55699999  9999987655332210       0223344578899999999999999999999999999      


Q ss_pred             CCCCCCceEEEeehhhHHHHHhcCccCCCCccccc
Q 013310          407 EDIEDGEVIGIITLEDVFEELLQEEIVDETDEYVD  441 (445)
Q Consensus       407 ~~~e~g~l~GIVT~~Dile~l~g~ei~de~d~~~~  441 (445)
                         |+|++.|+||.+||+|.+|| +|.||+|++++
T Consensus       171 ---EfGgVsGLVTIEDiLEqIVG-dIEDE~Deee~  201 (293)
T COG4535         171 ---EFGGVSGLVTIEDILEQIVG-DIEDEYDEEED  201 (293)
T ss_pred             ---ccCCeeeeEEHHHHHHHHhc-ccccccchhhh
Confidence               99999999999999999998 99999997754

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.28  E-value=3.2e-11  Score=98.52  Aligned_cols=78  Identities=8%  Similarity=0.175  Sum_probs=69.8

Q ss_pred             ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCCCCccccccccCCceeCCCCCHHHHHHH
Q 013310          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNE  316 (445)
Q Consensus       237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~im~~~~~~V~~~~~l~~al~~  316 (445)
                      ++++++++.++. ++++.|.+++++.+||++++ ++++|+++.+|+....             .+.++++++++.++++.
T Consensus         2 ~~~~v~~~~~i~-~a~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~-------------~~~~v~~~~~l~~a~~~   66 (96)
T cd04614           2 NVPTVWEETPLP-VAVRIMELANVKALPVLDDD-GKLSGIITERDLIAKS-------------EVVTATKRTTVSECAQK   66 (96)
T ss_pred             CccEeCCCCcHH-HHHHHHHHcCCCeEEEECCC-CCEEEEEEHHHHhcCC-------------CcEEecCCCCHHHHHHH
Confidence            467889999998 99999999999999999865 7999999999998632             16789999999999999


Q ss_pred             HhhCCCeEEEEEc
Q 013310          317 FQKGSSHMAAVVK  329 (445)
Q Consensus       317 m~~~~~~~a~Vvd  329 (445)
                      |.+++.+.+||+|
T Consensus        67 m~~~~~~~lpVv~   79 (96)
T cd04614          67 MKRNRIEQIPIIN   79 (96)
T ss_pred             HHHhCCCeeeEEC
Confidence            9999999999999

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.28  E-value=2.7e-11  Score=100.26  Aligned_cols=90  Identities=18%  Similarity=0.248  Sum_probs=76.6

Q ss_pred             ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCCCCccccccccCCceeCC-CCCHHHHHH
Q 013310          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPS-DMPLYDILN  315 (445)
Q Consensus       237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~im~~~~~~V~~-~~~l~~al~  315 (445)
                      ++..++.+.++. ++++.+.+++++++||++++ ++++|+++.++++.... .+.++.++|..++.++.+ ++++.++++
T Consensus         3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~-~~~~v~~~~~~~~~~~~~~~~~l~~~~~   79 (110)
T cd04601           3 DPITVSPDATVA-EALELMAEYGISGLPVVDDD-GKLVGIVTNRDLRFETD-LDKPVSEVMTPENLLTTVEGTSLEEALE   79 (110)
T ss_pred             CCeEeCCCCcHH-HHHHHHHHcCCceEEEEcCC-CEEEEEEEhhHeeeccc-CCCCHHHhcccCceEEecCCCCHHHHHH
Confidence            466788999998 99999999999999999875 78999999999875432 346788887666666666 999999999


Q ss_pred             HHhhCCCeEEEEEc
Q 013310          316 EFQKGSSHMAAVVK  329 (445)
Q Consensus       316 ~m~~~~~~~a~Vvd  329 (445)
                      .|.+++.+.+||+|
T Consensus        80 ~~~~~~~~~~~Vv~   93 (110)
T cd04601          80 LLHEHKIEKLPVVD   93 (110)
T ss_pred             HHHHhCCCeeeEEc
Confidence            99999999999999

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.28  E-value=1.8e-11  Score=104.70  Aligned_cols=91  Identities=19%  Similarity=0.310  Sum_probs=73.7

Q ss_pred             ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccC----------CCCCCccccccccCCce--e
Q 013310          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR----------PETETPVSAVSIRRIPR--V  304 (445)
Q Consensus       237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~----------~~~~~~v~~im~~~~~~--V  304 (445)
                      ++.+++.++++. ++++.|.+++...+||++++ ++++|+++.+|+....          ...+.+++++|.++...  +
T Consensus         2 ~~~~v~~~~~i~-~a~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~~   79 (126)
T cd04640           2 KPIVIPADTSID-EALELMIKHGVRLLLVVDSD-DNFIGVITAVDLLGEEPIKRIQEGGISRSELTVADVMTPKEDLKAL   79 (126)
T ss_pred             CCeEECCCCcHH-HHHHHHHHcCCcEEEEEcCC-CcEEEEEEHHHHhhChhhHHHHHcCCCchheEHHHhcCchhhhccc
Confidence            356789999998 99999998898999999865 7899999999988521          11235688888655433  3


Q ss_pred             ----CCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          305 ----PSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       305 ----~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                          ++++++.++++.|.+++.+.+||+|
T Consensus        80 ~~~~~~~~~l~~~l~~m~~~~~~~lpVvd  108 (126)
T cd04640          80 DLEELENASVGDVVETLKASGRQHALVVD  108 (126)
T ss_pred             cHHHhccCcHHHHHHHHHHCCCceEEEEE
Confidence                3689999999999999999999999

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.28  E-value=2.9e-11  Score=99.30  Aligned_cols=88  Identities=11%  Similarity=0.243  Sum_probs=77.6

Q ss_pred             ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCCCCccccccccCCceeCCCCCHHHHHHH
Q 013310          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNE  316 (445)
Q Consensus       237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~im~~~~~~V~~~~~l~~al~~  316 (445)
                      ++.++++++++. ++++.|.+++++.+||+++  ++++|+++.+|+.+...  ..++.++|..++.++++++++.++++.
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~Giv~~~~l~~~~~--~~~~~~~~~~~~~~v~~~~~l~~~~~~   76 (105)
T cd04599           2 DPITIDPLDSVG-RAARLMEKHRIGGLPVVED--GKLVGIITSRDVRRAHP--NRLVADAMTREVVTISPEASLLEAKRL   76 (105)
T ss_pred             CCEEECCCCcHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEehHHhhcccc--cCCHHHHccCCCEEECCCCCHHHHHHH
Confidence            456789999998 9999999999999999973  78999999999987532  356788888888899999999999999


Q ss_pred             HhhCCCeEEEEEc
Q 013310          317 FQKGSSHMAAVVK  329 (445)
Q Consensus       317 m~~~~~~~a~Vvd  329 (445)
                      |.+++.+.+||+|
T Consensus        77 ~~~~~~~~~~Vv~   89 (105)
T cd04599          77 MEEKKIERLPVLR   89 (105)
T ss_pred             HHHcCCCEeeEEE
Confidence            9999999999998

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.28  E-value=2.9e-11  Score=100.24  Aligned_cols=90  Identities=20%  Similarity=0.301  Sum_probs=78.0

Q ss_pred             ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCCC---CccccccccCCceeCCCCCHHHH
Q 013310          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETE---TPVSAVSIRRIPRVPSDMPLYDI  313 (445)
Q Consensus       237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~---~~v~~im~~~~~~V~~~~~l~~a  313 (445)
                      ++..++++.++. ++++.|.+.+++++||+++  ++++|+++.+|+.+......   .++.++|.+++.++++++++.++
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   78 (111)
T cd04612           2 DVVTVPVDLTVD-EVLALMFGERHRGYPVVDD--GRLVGIVTLADIRRVPAEGREATVLVGDVMTRDPVTASPDETLRDA   78 (111)
T ss_pred             CCEEeCCCCcHH-HHHHHHHHcCCCcceEeeC--CeEEEEEEHHHHHHHHhcCcccccCHHHhccCCCeEECCCCCHHHH
Confidence            456789999998 9999999889999999986  78999999999987543321   15677788889999999999999


Q ss_pred             HHHHhhCCCeEEEEEc
Q 013310          314 LNEFQKGSSHMAAVVK  329 (445)
Q Consensus       314 l~~m~~~~~~~a~Vvd  329 (445)
                      ++.|++++.+.+||+|
T Consensus        79 ~~~~~~~~~~~~~V~~   94 (111)
T cd04612          79 LKRMAERDIGRLPVVD   94 (111)
T ss_pred             HHHHHhCCCCeeeEEc
Confidence            9999999999999998

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.28  E-value=1.6e-11  Score=128.78  Aligned_cols=108  Identities=14%  Similarity=0.147  Sum_probs=94.7

Q ss_pred             EEeeCCCCccHHHHHHHHHcCCcEEEeEeCC--CCCEEEEEEhhhhhccCCCCCCcccccccc--CCceeCCCCCHHHHH
Q 013310          239 FSLDVNSKLDWEAMGKILARGHSRVPVYSGN--PKNIIGLLLVKSLLTVRPETETPVSAVSIR--RIPRVPSDMPLYDIL  314 (445)
Q Consensus       239 v~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~--~~~ivGiv~~kDll~~~~~~~~~v~~im~~--~~~~V~~~~~l~~al  314 (445)
                      .++++++++. ++++.|.+++++.+||++++  .++++|+|+.+|+.......+.+++++|.+  +++++++++++.+++
T Consensus       108 ~tV~pd~tl~-eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~~~~~~~V~dIMt~~~~~itv~~d~~l~eAl  186 (502)
T PRK07107        108 SNLTPDNTLA-DVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISRMSLDTKVKDFMTPFEKLVTANEGTTLKEAN  186 (502)
T ss_pred             CEeCCCCcHH-HHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccccCCCCCHHHHhCCCCCeEEECCCCcHHHHH
Confidence            5789999998 99999999999999999862  478999999999975432345789999975  677899999999999


Q ss_pred             HHHhhCCCeEEEEEccCCCccCCCCCCCCCccccc
Q 013310          315 NEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLN  349 (445)
Q Consensus       315 ~~m~~~~~~~a~Vvde~G~~~Giv~~T~~di~~~i  349 (445)
                      +.|.+++.+.+||+|+.|.++|+|  |.+|+++..
T Consensus       187 ~lM~e~~i~~LPVVD~~g~LvGII--T~~Dilk~~  219 (502)
T PRK07107        187 DIIWDHKLNTLPIVDKNGNLVYLV--FRKDYDSHK  219 (502)
T ss_pred             HHHHHcCCCEEEEEcCCCeEEEEE--EhHHHHhcc
Confidence            999999999999999999999999  999998643

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=99.27  E-value=4.5e-11  Score=98.52  Aligned_cols=88  Identities=15%  Similarity=0.302  Sum_probs=77.2

Q ss_pred             ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCCCCccccccccCCceeCCCCCHHHHHHH
Q 013310          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNE  316 (445)
Q Consensus       237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~im~~~~~~V~~~~~l~~al~~  316 (445)
                      ++++++.+.++. ++++.|.+.+++++||+++  ++++|+++.+|++...  ...++.++|..++.++++++++.++++.
T Consensus         3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~--~~~~g~v~~~~l~~~~--~~~~~~~~~~~~~~~v~~~~~l~~~~~~   77 (107)
T cd04610           3 DVITVSPDNTVK-DVIKLIKETGHDGFPVVDN--GKVVGIVSARDLLGKD--PDETVEEIMSKDLVVAVPEMDIMDAARV   77 (107)
T ss_pred             CcEEECCCCcHH-HHHHHHHHcCCCeeeEeEC--CEEEEEEEHHHhhccC--ccccHHHhCCCCCeEECCCCCHHHHHHH
Confidence            567889999998 9999998888899999985  7899999999998642  2356888887888899999999999999


Q ss_pred             HhhCCCeEEEEEc
Q 013310          317 FQKGSSHMAAVVK  329 (445)
Q Consensus       317 m~~~~~~~a~Vvd  329 (445)
                      |.+++.+.+||+|
T Consensus        78 ~~~~~~~~~~Vv~   90 (107)
T cd04610          78 MFRTGISKLPVVD   90 (107)
T ss_pred             HHHhCCCeEeEEC
Confidence            9999999999999

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.27  E-value=3.4e-11  Score=101.37  Aligned_cols=90  Identities=18%  Similarity=0.245  Sum_probs=77.9

Q ss_pred             ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCC--------------CCccccccccCCc
Q 013310          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET--------------ETPVSAVSIRRIP  302 (445)
Q Consensus       237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~--------------~~~v~~im~~~~~  302 (445)
                      ++.+++.+.++. ++++.|.+.+++.+||+++  ++++|+++.+|++......              ..++.++|.+++.
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (122)
T cd04585           2 NPITVTPDTSLM-EALKLMKENSIRRLPVVDR--GKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSDIMTRDPI   78 (122)
T ss_pred             CCEEeCCCCcHH-HHHHHHHhCCcceeeEecC--CeEEEEEeHHHHHHhhhcccccccchhhhhhhcccCHHHhccCCCe
Confidence            456789999998 9999999999999999986  7999999999998754221              2457778878889


Q ss_pred             eeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          303 RVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       303 ~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      ++++++++.++++.|.+++.+.+||+|
T Consensus        79 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~  105 (122)
T cd04585          79 TVSPDASVEEAAELMLERKISGLPVVD  105 (122)
T ss_pred             EeCCCCcHHHHHHHHHHcCCCceeEEC
Confidence            999999999999999999999999998

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.26  E-value=3.6e-11  Score=100.05  Aligned_cols=90  Identities=19%  Similarity=0.264  Sum_probs=77.7

Q ss_pred             ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCC----CCCccccccccCCceeCCCCCHHH
Q 013310          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE----TETPVSAVSIRRIPRVPSDMPLYD  312 (445)
Q Consensus       237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~----~~~~v~~im~~~~~~V~~~~~l~~  312 (445)
                      +++.++.+.++. ++++.|.+.+++.+||+++  ++++|+++.+|+......    ...++.++|..++.++++++++.+
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~   78 (111)
T cd04589           2 PPLIVDASTSIR-DAARLMREHGADALLVRDG--DPRLGIVTRTDLLDAVLLDGLPSSTPVGEIATFPLITVDPDDFLFN   78 (111)
T ss_pred             CCEEECCCCcHH-HHHHHHHHcCCCEEEEecC--CeEEEEEEHHHHHHHHHcCCCCCCCCHHHHhCCCcEEECCCCcHHH
Confidence            356788999998 9999999999999999986  689999999998865321    235688888888899999999999


Q ss_pred             HHHHHhhCCCeEEEEEc
Q 013310          313 ILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       313 al~~m~~~~~~~a~Vvd  329 (445)
                      +++.|.+++.+.+||+|
T Consensus        79 ~~~~~~~~~~~~~~Vv~   95 (111)
T cd04589          79 ALLLMTRHRIHRVVVRE   95 (111)
T ss_pred             HHHHHHHhCccEEEEee
Confidence            99999999999999998

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.26  E-value=3.6e-11  Score=100.28  Aligned_cols=90  Identities=13%  Similarity=0.231  Sum_probs=77.4

Q ss_pred             eEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCC----CCCccccccccCCceeCCCCCHHHH
Q 013310          238 TFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE----TETPVSAVSIRRIPRVPSDMPLYDI  313 (445)
Q Consensus       238 vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~----~~~~v~~im~~~~~~V~~~~~l~~a  313 (445)
                      ...+++++++. ++++.+.+++++++||++++ ++++|+++.+|+.+...+    ...++.++|..++.++++++++.++
T Consensus         3 ~~~~~~~~~~~-~~~~~~~~~~~~~~~vvd~~-~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~   80 (113)
T cd04615           3 PSCVVLNTDIA-RAVAEMYTSGSRALPVVDDK-KRLVGIITRYDVLSYALESEELKDAKVREVMNSPVITIDANDSIAKA   80 (113)
T ss_pred             CEEeeCCCcHH-HHHHHHHHcCCceEeEEcCC-CCEEEEEEHHHHHHhhhhhhhhcCCcHHHhccCCceEECCCCcHHHH
Confidence            45678999998 99999999999999999864 789999999999864221    2356788888888999999999999


Q ss_pred             HHHHhhCCCeEEEEEc
Q 013310          314 LNEFQKGSSHMAAVVK  329 (445)
Q Consensus       314 l~~m~~~~~~~a~Vvd  329 (445)
                      ++.|.+++.+.+||+|
T Consensus        81 ~~~~~~~~~~~~~Vvd   96 (113)
T cd04615          81 RWLMSNNNISRLPVLD   96 (113)
T ss_pred             HHHHHHcCCCeeeEEC
Confidence            9999999999999998

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=99.26  E-value=4.6e-11  Score=98.54  Aligned_cols=84  Identities=18%  Similarity=0.201  Sum_probs=74.8

Q ss_pred             EeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCCCCccccccccCCceeCCCCCHHHHHHHHhh
Q 013310          240 SLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQK  319 (445)
Q Consensus       240 ~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~im~~~~~~V~~~~~l~~al~~m~~  319 (445)
                      +++++.++. ++++.+.+.+++++||+++  ++++|+++.+|+.+...   .++.++|..++.+++++.++.++++.|.+
T Consensus         5 ~v~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~---~~~~~~~~~~~~~v~~~~~l~~a~~~~~~   78 (104)
T cd04594           5 KVKDYDKVY-EAKRIMIENDLLSLPVVDY--NKFLGAVYLKDIENATY---GDVVDYIVRGIPYVRLTSTAEEAWEVMMK   78 (104)
T ss_pred             EECCCCCHH-HHHHHHHHcCCcEEEEEEC--CEEEEEEEHHHHhhhcc---cchhhhhhcCCcEEcCCCCHHHHHHHHHH
Confidence            578999998 9999999999999999985  78999999999986432   35677888888999999999999999999


Q ss_pred             CCCeEEEEEc
Q 013310          320 GSSHMAAVVK  329 (445)
Q Consensus       320 ~~~~~a~Vvd  329 (445)
                      ++.+.+||+|
T Consensus        79 ~~~~~~~Vv~   88 (104)
T cd04594          79 NKTRWCPVVD   88 (104)
T ss_pred             cCcceEEEEE
Confidence            9999999998

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=99.26  E-value=3.3e-11  Score=100.09  Aligned_cols=90  Identities=20%  Similarity=0.354  Sum_probs=78.7

Q ss_pred             ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCC--CCCccccccccCCceeCCCCCHHHHH
Q 013310          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE--TETPVSAVSIRRIPRVPSDMPLYDIL  314 (445)
Q Consensus       237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~--~~~~v~~im~~~~~~V~~~~~l~~al  314 (445)
                      ++.+++.+.++. ++.+.+.+.+++++||+++  ++++|+++.+|+.+....  ...++.++|.+++.++++++++.+++
T Consensus         3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~   79 (110)
T cd04595           3 PVKTVRPEATIE-EARELLLRYGHTALPVVEG--GRVVGIISRRDVEKALRHGLGHAPVKDYMSTDVVTVPPDTPLSEVQ   79 (110)
T ss_pred             CceEeCCCCcHH-HHHHHHHHcCCCeeeEeeC--CEEEEEEEHHHHHHHHhcccccCcHHHHhcCCCEEECCCCcHHHHH
Confidence            467889999998 9999999889999999986  789999999998764322  23678888888899999999999999


Q ss_pred             HHHhhCCCeEEEEEc
Q 013310          315 NEFQKGSSHMAAVVK  329 (445)
Q Consensus       315 ~~m~~~~~~~a~Vvd  329 (445)
                      +.|.+++.+.+||+|
T Consensus        80 ~~~~~~~~~~~~V~~   94 (110)
T cd04595          80 ELMVEHDIGRVPVVE   94 (110)
T ss_pred             HHHHHcCCCeeEEEe
Confidence            999999999999998

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.26  E-value=3.7e-11  Score=99.89  Aligned_cols=90  Identities=19%  Similarity=0.253  Sum_probs=78.0

Q ss_pred             ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCC----CCCccccccccCCceeCCCCCHHH
Q 013310          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE----TETPVSAVSIRRIPRVPSDMPLYD  312 (445)
Q Consensus       237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~----~~~~v~~im~~~~~~V~~~~~l~~  312 (445)
                      ++.+++.+.++. ++.+.+.+++++++||+++  ++++|+++.+|+......    .+.++.++|.++++++++++++.+
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~   78 (111)
T cd04800           2 PPVTCSPDTTIR-EAARLMTEHRVSSLLVVDD--GRLVGIVTDRDLRNRVVAEGLDPDTPVSEVMTAPPITIPPDATVFE   78 (111)
T ss_pred             CCEEECCCCcHH-HHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHhccCCCccCCHHHHhCCCCeEECCCCcHHH
Confidence            467789999998 9999999989999999986  799999999998753211    235688888888999999999999


Q ss_pred             HHHHHhhCCCeEEEEEc
Q 013310          313 ILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       313 al~~m~~~~~~~a~Vvd  329 (445)
                      +++.|.+++.+.+||+|
T Consensus        79 ~~~~~~~~~~~~~~Vv~   95 (111)
T cd04800          79 ALLLMLERGIHHLPVVD   95 (111)
T ss_pred             HHHHHHHcCCCeeeEeE
Confidence            99999999999999998

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.26  E-value=1.9e-11  Score=101.96  Aligned_cols=91  Identities=22%  Similarity=0.270  Sum_probs=78.2

Q ss_pred             ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCC------CCCccccccccCCceeCCCCCH
Q 013310          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE------TETPVSAVSIRRIPRVPSDMPL  310 (445)
Q Consensus       237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~------~~~~v~~im~~~~~~V~~~~~l  310 (445)
                      ++.+++.+.++. ++++.|.+++++++||++++ ++++|+++.+|+++...+      ...++.++|..++.++++++++
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l   79 (114)
T cd04629           2 NPVTFTPDMSVT-EAVEKLLKSKISGGPVVDDN-GNLVGFLSEQDCLKQLLESSYHCDGVATVRDIMTTEVLTVSPDDSI   79 (114)
T ss_pred             CCeEeCCCCCHH-HHHHHHHhcCCCCccEECCC-CeEEEEeehHHHHHHhhhhhhccCCCccHHHHhccCceEECCCCcH
Confidence            456789999998 99999998899999999865 789999999999864321      2356888888888899999999


Q ss_pred             HHHHHHHhhCCCeEEEEEc
Q 013310          311 YDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       311 ~~al~~m~~~~~~~a~Vvd  329 (445)
                      .++++.|.+++.+.+||+|
T Consensus        80 ~~~~~~~~~~~~~~~~Vv~   98 (114)
T cd04629          80 VDLAQLMLKAKPKRYPVVD   98 (114)
T ss_pred             HHHHHHHHHhCCCccCEEE
Confidence            9999999999999999998

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.25  E-value=3.6e-11  Score=102.92  Aligned_cols=91  Identities=14%  Similarity=0.276  Sum_probs=77.2

Q ss_pred             ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCC-----------------CCCcccccccc
Q 013310          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE-----------------TETPVSAVSIR  299 (445)
Q Consensus       237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~-----------------~~~~v~~im~~  299 (445)
                      ++..++++.++. ++++.|.+.+++.+||++++ ++++|+++.+|+......                 .+.++.++|.+
T Consensus         2 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (128)
T cd04632           2 DVITVREDDSVG-KAINVLREHGISRLPVVDDN-GKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYDAMSS   79 (128)
T ss_pred             CceEeCCCCCHH-HHHHHHHHcCCCEEEEECCC-CcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHHHhcC
Confidence            456788999998 99999999999999999875 789999999998743211                 12467788888


Q ss_pred             CCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          300 RIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       300 ~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      +++++++++++.++++.|.+++.+.+||++
T Consensus        80 ~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~  109 (128)
T cd04632          80 PVITASPNDSVRDAVDRMLENDDSSVVVVT  109 (128)
T ss_pred             CCceECCCCcHHHHHHHHHhCCCCeEeEec
Confidence            899999999999999999999999999884

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=99.25  E-value=3.6e-11  Score=100.17  Aligned_cols=91  Identities=15%  Similarity=0.205  Sum_probs=77.9

Q ss_pred             ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCC----CCCccccccccCCceeCCCCCHHH
Q 013310          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE----TETPVSAVSIRRIPRVPSDMPLYD  312 (445)
Q Consensus       237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~----~~~~v~~im~~~~~~V~~~~~l~~  312 (445)
                      ++.+++.+.++. ++++.+.+.+++++||++++ ++++|+++.+++.+....    ...++.++|..++.++++++++.+
T Consensus         3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~~i~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~   80 (114)
T cd04604           3 ALPLVSPDTSLK-DALLEMSRKGLGMTAVVDED-GRLVGIFTDGDLRRALEKGLDILTLPVADVMTRNPKTIDPDALAAE   80 (114)
T ss_pred             cccccCCCCcHH-HHHHHHHhcCccEEEEEcCC-CCEEEEechHHHHHHHhccCccccCCHHHhhccCCeEECCCCcHHH
Confidence            456788999998 99999988889999999875 789999999998765332    124688888888889999999999


Q ss_pred             HHHHHhhCCCeEEEEEc
Q 013310          313 ILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       313 al~~m~~~~~~~a~Vvd  329 (445)
                      +++.|.+++.+.+||+|
T Consensus        81 ~~~~~~~~~~~~~~Vv~   97 (114)
T cd04604          81 ALELMEENKITALPVVD   97 (114)
T ss_pred             HHHHHHHcCCCEEEEEC
Confidence            99999999999999998

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=99.25  E-value=2.5e-11  Score=105.11  Aligned_cols=91  Identities=20%  Similarity=0.297  Sum_probs=78.5

Q ss_pred             ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCC--------------------------CCC
Q 013310          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP--------------------------ETE  290 (445)
Q Consensus       237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~--------------------------~~~  290 (445)
                      ++.+++++.++. ++++.|.++++.++||++++ ++++|+++.+|+.+...                          ...
T Consensus         3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vvd~~-~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (135)
T cd04586           3 DVVTVSPETSVA-EAARLMLDNHISGLPVVDDD-GRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHG   80 (135)
T ss_pred             CCEEeCCCCCHH-HHHHHHHHcCCCCceEECCC-CCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcC
Confidence            567889999998 99999999999999999864 78999999999875321                          123


Q ss_pred             CccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          291 TPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       291 ~~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      .++.++|..++.++++++++.++++.|.+++.+.+||+|
T Consensus        81 ~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd  119 (135)
T cd04586          81 RKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR  119 (135)
T ss_pred             CCHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec
Confidence            567788878888999999999999999999999999998

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=99.25  E-value=4.4e-11  Score=99.34  Aligned_cols=85  Identities=19%  Similarity=0.230  Sum_probs=72.5

Q ss_pred             eeCCCCccHHHHHHHHHcC-----CcEEEeEeCCCCCEEEEEEhhhhhccCCCCCCccccccccCCceeCCCCCHHHHHH
Q 013310          241 LDVNSKLDWEAMGKILARG-----HSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILN  315 (445)
Q Consensus       241 v~~~~sl~~e~l~~~~~~~-----~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~im~~~~~~V~~~~~l~~al~  315 (445)
                      +++++++. ++++.|.+++     +..+||++++ ++++|+++.+|++...  .+.++.++|..++..+++++++.++++
T Consensus         2 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~vvd~~-~~~~G~v~~~~l~~~~--~~~~v~~~~~~~~~~i~~~~~~~~~~~   77 (109)
T cd04606           2 VREDWTVG-EALEYLRRNADDPETIYYIYVVDEE-GRLLGVVSLRDLLLAD--PDTPVSDIMDTDVISVSADDDQEEVAR   77 (109)
T ss_pred             ccccCcHH-HHHHHHHhccCcccceeEEEEECCC-CCEEEEEEHHHHhcCC--CcchHHHHhCCCCeEEcCCCCHHHHHH
Confidence            46788898 9999998777     3678999864 7899999999998642  245688888778889999999999999


Q ss_pred             HHhhCCCeEEEEEc
Q 013310          316 EFQKGSSHMAAVVK  329 (445)
Q Consensus       316 ~m~~~~~~~a~Vvd  329 (445)
                      .|.+++.+.+||+|
T Consensus        78 ~~~~~~~~~~~Vv~   91 (109)
T cd04606          78 LFEKYDLLALPVVD   91 (109)
T ss_pred             HHHHcCCceeeeEC
Confidence            99999999999998

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.25  E-value=4.1e-11  Score=100.32  Aligned_cols=90  Identities=12%  Similarity=0.307  Sum_probs=74.4

Q ss_pred             ceEEeeCCCCccHHHHHHHHHcC-CcEEEeEeCCCCCEEEEEEhhhhhccCCC----CCCccccccccCCceeCCC--CC
Q 013310          237 STFSLDVNSKLDWEAMGKILARG-HSRVPVYSGNPKNIIGLLLVKSLLTVRPE----TETPVSAVSIRRIPRVPSD--MP  309 (445)
Q Consensus       237 ~vv~v~~~~sl~~e~l~~~~~~~-~s~~PV~~~~~~~ivGiv~~kDll~~~~~----~~~~v~~im~~~~~~V~~~--~~  309 (445)
                      ++..++.+.++. ++++.|.+++ +..+||.++  ++++|+++.+|+++....    ...++.++|.+++++++++  ++
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~   78 (115)
T cd04620           2 HPLTVTPDTPVA-DAIALMSQQGDSSCVLVVEK--GRLLGIFTERDIVRLTAIGKDLSDLPIGEVMTQPVVTLQESEIQD   78 (115)
T ss_pred             CCeEeCCCCcHH-HHHHHHHhcCCCceEEEcCC--CcEEEEEeHHHHHHHHhcCCCccccCHHHhcCCCcEEEecccccC
Confidence            355788999998 9999998888 667787763  789999999999864322    1256788888888889887  78


Q ss_pred             HHHHHHHHhhCCCeEEEEEc
Q 013310          310 LYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       310 l~~al~~m~~~~~~~a~Vvd  329 (445)
                      +.++++.|.+++.+.+||+|
T Consensus        79 l~~a~~~~~~~~~~~~pVvd   98 (115)
T cd04620          79 IFTALSLFRQHQIRHLPVLD   98 (115)
T ss_pred             HHHHHHHHHHhCCceEEEEc
Confidence            99999999999999999999

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=99.25  E-value=6.9e-11  Score=124.19  Aligned_cols=127  Identities=16%  Similarity=0.177  Sum_probs=103.6

Q ss_pred             HHHHHHHhhcCcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCC--CCCEEEEEEhhhhhccCCCCC
Q 013310          213 ETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGN--PKNIIGLLLVKSLLTVRPETE  290 (445)
Q Consensus       213 E~~~l~~~~~l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~--~~~ivGiv~~kDll~~~~~~~  290 (445)
                      .++.++.+.+.     +..|++  +++++++++++. ++++.|.+++++.+||++++  .++++|+|+.+|+.... ..+
T Consensus        92 q~~~Irkvk~~-----~~gmi~--dpvtV~pd~tV~-dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~-~~~  162 (505)
T PLN02274         92 QAAIVRKAKSR-----RVGFVS--DPVVKSPSSTIS-SLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVN-DRE  162 (505)
T ss_pred             HHHHHHHhhcc-----cccccC--CCeeeCCCCcHH-HHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhcc-ccC
Confidence            34555555543     222653  688999999998 99999999999999999863  36899999999996543 345


Q ss_pred             CccccccccC--CceeCCCCCHHHHHHHHhhCCCeEEEEEccCCCccCCCCCCCCCcccccc
Q 013310          291 TPVSAVSIRR--IPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNE  350 (445)
Q Consensus       291 ~~v~~im~~~--~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Giv~~T~~di~~~i~  350 (445)
                      .++.++|.++  ++++++++++.++++.|.+++.+.+||+|+.|.++|+|  |.+|+++...
T Consensus       163 ~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvI--Tr~DIlk~~~  222 (505)
T PLN02274        163 TKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLV--TRTDVKRVKG  222 (505)
T ss_pred             CcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEE--EHHHHHHHhh
Confidence            7899999766  67999999999999999999999999999888888888  8888876665

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.24  E-value=4.2e-11  Score=99.72  Aligned_cols=90  Identities=20%  Similarity=0.242  Sum_probs=76.7

Q ss_pred             ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCC----CC-CCccccccccCCceeCCCCCHH
Q 013310          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP----ET-ETPVSAVSIRRIPRVPSDMPLY  311 (445)
Q Consensus       237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~----~~-~~~v~~im~~~~~~V~~~~~l~  311 (445)
                      ++.+++.+.+++ ++.+.|.+++.+++||+++  ++++|+++.+|++....    .. ..++.++|.+++.++++++++.
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~i~~~~~~~v~~~~~l~   78 (113)
T cd04587           2 KPATVSPTTTVQ-EAAKLMREKRVSCVLVMDG--NKLVGIFTSKDIALRVVAQGLDPESTLVERVMTPNPVCATSDTPVL   78 (113)
T ss_pred             CCeEeCCCCCHH-HHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHHhcCCCcCcCCHHHhcCCCCeEEcCCCCHH
Confidence            466788999998 9999999899999999985  78999999999874221    11 1567888888888999999999


Q ss_pred             HHHHHHhhCCCeEEEEEc
Q 013310          312 DILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       312 ~al~~m~~~~~~~a~Vvd  329 (445)
                      ++++.|.+++.+.+||+|
T Consensus        79 ~~~~~~~~~~~~~l~Vv~   96 (113)
T cd04587          79 EALHLMVQGKFRHLPVVD   96 (113)
T ss_pred             HHHHHHHHcCCCcccEEC
Confidence            999999999999999998

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.24  E-value=4.9e-11  Score=99.99  Aligned_cols=91  Identities=16%  Similarity=0.249  Sum_probs=76.1

Q ss_pred             ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCC--CCCEEEEEEhhhhhccCCCCCCccccccccCCceeCC--CCCHHH
Q 013310          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGN--PKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPS--DMPLYD  312 (445)
Q Consensus       237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~--~~~ivGiv~~kDll~~~~~~~~~v~~im~~~~~~V~~--~~~l~~  312 (445)
                      ++.+++.++++. ++++.|.+++++++||+++.  .++++|+++.+|++.... ...+++++|..+...+..  ++++.+
T Consensus         3 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~~-~~~~v~~~~~~~~~~~~~~~~~~l~~   80 (114)
T cd04602           3 DPSVLSPDHTVA-DVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLTD-SETPLSEVMTPREVLVVAPTGITLEE   80 (114)
T ss_pred             CCeEcCCCCCHH-HHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhhc-cCCCHHHhcCCCceEEECCCCCCHHH
Confidence            456788999998 99999998899999999852  378999999999875322 235688888776777755  999999


Q ss_pred             HHHHHhhCCCeEEEEEc
Q 013310          313 ILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       313 al~~m~~~~~~~a~Vvd  329 (445)
                      +++.|++++.+.+||+|
T Consensus        81 ~l~~~~~~~~~~~pVv~   97 (114)
T cd04602          81 ANEILRESKKGKLPIVN   97 (114)
T ss_pred             HHHHHHhcCCCceeEEC
Confidence            99999999999999999

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=99.24  E-value=6e-11  Score=124.56  Aligned_cols=118  Identities=14%  Similarity=0.219  Sum_probs=101.3

Q ss_pred             ccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCC--CCCEEEEEEhhhhhccCCCCCCcccccccc--CCc
Q 013310          227 TAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGN--PKNIIGLLLVKSLLTVRPETETPVSAVSIR--RIP  302 (445)
Q Consensus       227 ~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~--~~~ivGiv~~kDll~~~~~~~~~v~~im~~--~~~  302 (445)
                      ++++.|.+  +++++++++++. ++++.|.+++++.+||++++  .++++|+|+.+|+.... ..+.+++++|.+  +++
T Consensus        97 ~~e~g~i~--dpvtv~pd~tv~-eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~~-~~~~~V~diMt~~~~lv  172 (495)
T PTZ00314         97 RFENGFIM--DPYVLSPNHTVA-DVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVK-DKSTPVSEVMTPREKLV  172 (495)
T ss_pred             cccccccc--CCeecCCCCCHH-HHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhcc-cCCCCHHHhhCCcCCce
Confidence            34556764  567899999998 99999999999999999863  36899999999997532 334679999876  788


Q ss_pred             eeCCCCCHHHHHHHHhhCCCeEEEEEccCCCccCCCCCCCCCcccccc
Q 013310          303 RVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNE  350 (445)
Q Consensus       303 ~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Giv~~T~~di~~~i~  350 (445)
                      ++++++++.++++.|.+++.+.+||+|+.|.+.|+|  |.+|+++...
T Consensus       173 tv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGII--T~~DIl~~~~  218 (495)
T PTZ00314        173 VGNTPISLEEANEVLRESRKGKLPIVNDNGELVALV--SRSDLKKNRG  218 (495)
T ss_pred             EeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEE--EehHhhhccc
Confidence            999999999999999999999999999999999999  9999986654

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=99.23  E-value=3.7e-11  Score=99.76  Aligned_cols=86  Identities=15%  Similarity=0.152  Sum_probs=74.9

Q ss_pred             CceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCC--CCCEEEEEEhhhhhccCCCCCCccccccccCCceeCCCCCHHHH
Q 013310          236 ESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGN--PKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDI  313 (445)
Q Consensus       236 ~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~--~~~ivGiv~~kDll~~~~~~~~~v~~im~~~~~~V~~~~~l~~a  313 (445)
                      ++...++++.++. ++.+.+.+.+++++||+++.  .++++|+++.+|+.....+       +|.+++.++++++++.++
T Consensus         2 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~-------~m~~~~~~v~~~~~l~~~   73 (105)
T cd04591           2 PLVVLLPEGMTVE-DLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKN-------YIDPSPFTVSPRTSLEKV   73 (105)
T ss_pred             CceEEecccccHH-HHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHH-------hccCCCceECCCCcHHHH
Confidence            3567889999998 99999999999999999862  3789999999999865321       677888899999999999


Q ss_pred             HHHHhhCCCeEEEEEc
Q 013310          314 LNEFQKGSSHMAAVVK  329 (445)
Q Consensus       314 l~~m~~~~~~~a~Vvd  329 (445)
                      ++.|++++.+.+||++
T Consensus        74 ~~~~~~~~~~~~pVv~   89 (105)
T cd04591          74 HQLFRKLGLRHLLVVD   89 (105)
T ss_pred             HHHHHHcCCCEEEEEE
Confidence            9999999999999996

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.23  E-value=3.8e-11  Score=101.68  Aligned_cols=90  Identities=13%  Similarity=0.209  Sum_probs=77.5

Q ss_pred             ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCC--------------CCCccccccccCCc
Q 013310          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE--------------TETPVSAVSIRRIP  302 (445)
Q Consensus       237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~--------------~~~~v~~im~~~~~  302 (445)
                      ++.+++++.++. ++++.+.+++++++||+++  ++++|+++.+|+.+....              ...++.++|.++++
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (122)
T cd04637           2 RVVTVEMDDRLE-EVREIFEKHKFHHLLVVED--NELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQIMTRDPI   78 (122)
T ss_pred             CceEeCCCCCHH-HHHHHHHhCCCCEEEEEeC--CeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHHhhcCCCe
Confidence            467889999998 9999999999999999985  789999999998764211              12457788888899


Q ss_pred             eeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          303 RVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       303 ~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      ++++++++.++++.|.+++.+.+||+|
T Consensus        79 ~v~~~~~l~~~~~~~~~~~~~~~~vv~  105 (122)
T cd04637          79 TVSPDTPVDEASKLLLENSISCLPVVD  105 (122)
T ss_pred             eeCCCCcHHHHHHHHHHcCCCeEeEEC
Confidence            999999999999999999999999998

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=99.22  E-value=4.1e-11  Score=125.33  Aligned_cols=101  Identities=19%  Similarity=0.317  Sum_probs=84.4

Q ss_pred             CcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCC----CCCccccccc
Q 013310          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE----TETPVSAVSI  298 (445)
Q Consensus       223 l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~----~~~~v~~im~  298 (445)
                      +++.+|+++|.+  ++.++++++++. ++++.|.+++++.+||++++ ++++|+|+.+|+++....    .+.++.++|.
T Consensus       332 l~~~~v~~im~~--~~~~v~~~~tl~-ea~~~m~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~v~~im~  407 (454)
T TIGR01137       332 LKNATVKDLHLP--APVTVHPTETVG-DAIEILREYGFDQLPVVTEA-GKVLGSVTLRELLSALFAGKANPDDAVSKVMS  407 (454)
T ss_pred             hccCCHHHhCcC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHHhccCCCcCCCHHHhcC
Confidence            788999999985  588899999998 99999999999999999865 789999999999864322    2357889988


Q ss_pred             cCCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          299 RRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       299 ~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      +++.++++++++.++++.|.+++  .++|++
T Consensus       408 ~~~~~v~~~~~l~~a~~~~~~~~--~~vV~~  436 (454)
T TIGR01137       408 KKFIQIGEGEKLSDLSKFLEKNS--SAIVTE  436 (454)
T ss_pred             CCCeEECCcCcHHHHHHHHHHCC--eeEEEE
Confidence            88889999999999999998764  344443

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.21  E-value=1.3e-10  Score=96.70  Aligned_cols=90  Identities=16%  Similarity=0.241  Sum_probs=76.7

Q ss_pred             ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhcc-CCC----CCCccccccccCCceeCCCCCHH
Q 013310          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTV-RPE----TETPVSAVSIRRIPRVPSDMPLY  311 (445)
Q Consensus       237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~-~~~----~~~~v~~im~~~~~~V~~~~~l~  311 (445)
                      ++.+++.++++. ++.+.|.+++++.+||+++  ++++|+++.+|++.. ...    ...++.++|.+.+.++++++++.
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~   78 (113)
T cd04622           2 DVVTVSPDDTIR-EAARLMREHDVGALPVCEN--DRLVGIVTDRDIVVRAVAEGRDPDTTTVGDVMTRGVVTVTEDDDVD   78 (113)
T ss_pred             CCEEECCCCcHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEEhHHHHHHHhhccCCcccCCHHHhccCCccEECCCCCHH
Confidence            466789999998 9999999999999999986  799999999998632 111    11348888888889999999999


Q ss_pred             HHHHHHhhCCCeEEEEEc
Q 013310          312 DILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       312 ~al~~m~~~~~~~a~Vvd  329 (445)
                      ++++.|.+++.+.+||+|
T Consensus        79 ~~~~~~~~~~~~~~~V~~   96 (113)
T cd04622          79 EAARLMREHQVRRLPVVD   96 (113)
T ss_pred             HHHHHHHHcCCCeeeEEC
Confidence            999999999999999998

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.20  E-value=1.6e-10  Score=95.32  Aligned_cols=89  Identities=18%  Similarity=0.246  Sum_probs=77.3

Q ss_pred             ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCCCCccccccccCCceeCCCCCHHHHHHH
Q 013310          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNE  316 (445)
Q Consensus       237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~im~~~~~~V~~~~~l~~al~~  316 (445)
                      ++++++.+.++. ++++.+.+.+++++||++++ ++++|+++.+++.....  +.++.++|.+++.++++++++.++++.
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~g~v~~~~l~~~~~--~~~~~~~~~~~~~~v~~~~~l~~~~~~   77 (106)
T cd04638           2 NVVYVTLPGTRD-DVLELLKEYKVSGVPVVKKS-GELVGIITRKDLLRNPE--EEQLALLMTRDPPTVSPDDDVKEAAKL   77 (106)
T ss_pred             CcEEECCCCCHH-HHHHHHHHcCCCeEEEEcCC-CcEEEEEEHHHHHhccc--cchHHHHhcCCCceECCCCCHHHHHHH
Confidence            467888999998 99999999999999999875 78999999999986422  245677777888899999999999999


Q ss_pred             HhhCCCeEEEEEc
Q 013310          317 FQKGSSHMAAVVK  329 (445)
Q Consensus       317 m~~~~~~~a~Vvd  329 (445)
                      |.+++.+.+||+|
T Consensus        78 ~~~~~~~~~~Vvd   90 (106)
T cd04638          78 MVENNIRRVPVVD   90 (106)
T ss_pred             HHHcCCCEEEEEE
Confidence            9999999999998

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=99.20  E-value=5.3e-12  Score=124.18  Aligned_cols=132  Identities=18%  Similarity=0.201  Sum_probs=107.0

Q ss_pred             CCCcccccccc--CCceeCCCCCHHHHHHHHhhCCCeEEEEEccC-CCccCCCCCCCCCcccccccCCCCCCCCcccccc
Q 013310          289 TETPVSAVSIR--RIPRVPSDMPLYDILNEFQKGSSHMAAVVKAK-GKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSK  365 (445)
Q Consensus       289 ~~~~v~~im~~--~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~-G~~~Giv~~T~~di~~~i~~~~~~~~~~~~~~~~  365 (445)
                      ++.+|+++|..  ++.++++++++.++++.+.+++.+.+||+++. |.++|+|  +.+|++......  ...     ...
T Consensus        65 ~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv--~~kDll~~~~~~--~~~-----~~l  135 (292)
T PRK15094         65 ADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGIL--MAKDLLPFMRSD--AEA-----FSM  135 (292)
T ss_pred             CCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEE--EHHHHHhHhhcc--CCc-----CCH
Confidence            34788999875  58899999999999999999999999999876 7899999  999988533210  000     001


Q ss_pred             cccCCCceEeeccCCCccccccccCCCCCCCCCccccccccCCCCCCceEEEeehhhHHHHHhcCccCCCCccc
Q 013310          366 QDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELLQEEIVDETDEY  439 (445)
Q Consensus       366 ~~~~~~~~~v~~~~~i~~~~~~~~~~~~~~~~tl~g~~~~~~~~e~g~l~GIVT~~Dile~l~g~ei~de~d~~  439 (445)
                      ...-...+.+++++++.++.+.|..+...++.+++         ++|+++|+||.+||+++++| +|.||+|..
T Consensus       136 ~~l~r~~~~V~e~~~l~~~L~~m~~~~~~~a~VvD---------e~G~viGiVTleDIle~ivG-ei~de~d~~  199 (292)
T PRK15094        136 DKVLRQAVVVPESKRVDRMLKEFRSQRYHMAIVID---------EFGGVSGLVTIEDILELIVG-EIEDEYDEE  199 (292)
T ss_pred             HHHcCCCcCcCCCCcHHHHHHHHHhcCCEEEEEEe---------CCCCEEEEeEHHHHHHHHhC-CCccccccc
Confidence            11223456899999999999999998888888888         89999999999999999998 999998843

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=99.20  E-value=1e-10  Score=121.91  Aligned_cols=117  Identities=18%  Similarity=0.216  Sum_probs=100.9

Q ss_pred             ccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCCCCccccccccCCcee
Q 013310          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRV  304 (445)
Q Consensus       225 ~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~im~~~~~~V  304 (445)
                      ..++.++|.+  +++++++++++. ++++.|.+++++.+||+++  ++++|+|+.+|+....  ...+++++|..+++++
T Consensus        87 ~VKv~eim~~--~pvtv~p~~tI~-eA~~lm~~~~~~~~vVvD~--gklvGIVT~rDL~~~~--~~~~V~dIMt~~litv  159 (475)
T TIGR01303        87 FVKSRDLVLD--TPITLAPHDTVS-DAMALIHKRAHGAAVVILE--DRPVGLVTDSDLLGVD--RFTQVRDIMSTDLVTA  159 (475)
T ss_pred             hcchhhcccc--CCeEECCCCCHH-HHHHHHHhcCCeEEEEEEC--CEEEEEEEHHHhhcCC--CCCCHHHHccCCceEe
Confidence            5678889975  578899999998 9999999999999999875  5899999999986542  3367999999999999


Q ss_pred             CCCCCHHHHHHHHhhCCCeEEEEEccCCCccCCCCCCCCCcccccc
Q 013310          305 PSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNE  350 (445)
Q Consensus       305 ~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Giv~~T~~di~~~i~  350 (445)
                      ++++++.++++.|.+++.+.+||+|++|.++|+|  |.+|+++...
T Consensus       160 ~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGII--T~~DLl~~~~  203 (475)
T TIGR01303       160 PADTEPRKAFDLLEHAPRDVAPLVDADGTLAGIL--TRTGALRATI  203 (475)
T ss_pred             CCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEE--EHHHHHHHHh
Confidence            9999999999999999999999999878888888  7777775444

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.19  E-value=9.6e-11  Score=97.50  Aligned_cols=90  Identities=14%  Similarity=0.224  Sum_probs=75.9

Q ss_pred             ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCC-----CCCccccccccCCceeCCCCCHH
Q 013310          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE-----TETPVSAVSIRRIPRVPSDMPLY  311 (445)
Q Consensus       237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~-----~~~~v~~im~~~~~~V~~~~~l~  311 (445)
                      +++++++++++. ++++.+.+++++.++|.++  ++++|+++.+|+.+....     ...++.++|..++.++++++++.
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~   78 (112)
T cd04625           2 TIYTVAPETLLS-EAVATMAEQDLGSLVVMER--GELVGLLTFREVLQAMAQHGAGVLDTTVRAIMNPEPIVASPDDSID   78 (112)
T ss_pred             CcEEECCCCcHH-HHHHHHHHcCCCeEEEeeC--CEEEEEEEHHHHHHHHHhcCCchhcCCHHHHhCCCCeEECCCCCHH
Confidence            467889999998 9999998888888877653  789999999999864321     23568888877788999999999


Q ss_pred             HHHHHHhhCCCeEEEEEc
Q 013310          312 DILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       312 ~al~~m~~~~~~~a~Vvd  329 (445)
                      ++++.|.+++.+.+||+|
T Consensus        79 ~a~~~m~~~~~~~l~Vv~   96 (112)
T cd04625          79 EVRRLMVERHLRYLPVLD   96 (112)
T ss_pred             HHHHHHHHcCCCeeeEEE
Confidence            999999999999999998

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.19  E-value=1.5e-10  Score=96.27  Aligned_cols=90  Identities=17%  Similarity=0.236  Sum_probs=77.4

Q ss_pred             ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCC-----CCCCccccccccCCceeCCCCCHH
Q 013310          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP-----ETETPVSAVSIRRIPRVPSDMPLY  311 (445)
Q Consensus       237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~-----~~~~~v~~im~~~~~~V~~~~~l~  311 (445)
                      +++++++++++. ++++.|.+++++.+||+++  ++++|+++.+|+++...     ....++.++|.+++.++++++++.
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~   78 (112)
T cd04802           2 NVITVDPDTTVY-EAANIMTENNIGRLIVVDN--EKPVGIITERDLVKKVVSRNLKPREVPVGEVMSTPLITIDPNASLN   78 (112)
T ss_pred             CcEEECCCCCHH-HHHHHHHHCCCCEEEEEEC--CEEEEEEEHHHHHHHHhhccCCcccCCHHHhcCCCcEEECCCCCHH
Confidence            456789999998 9999999999999999986  48999999999986431     123567888878888999999999


Q ss_pred             HHHHHHhhCCCeEEEEEc
Q 013310          312 DILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       312 ~al~~m~~~~~~~a~Vvd  329 (445)
                      ++++.|.+++.+.+||+|
T Consensus        79 ~~~~~~~~~~~~~~~Vv~   96 (112)
T cd04802          79 EAAKLMAKHGIKRLPVVD   96 (112)
T ss_pred             HHHHHHHHcCCCeeEEee
Confidence            999999999999999998

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.18  E-value=1.2e-10  Score=98.31  Aligned_cols=91  Identities=13%  Similarity=0.205  Sum_probs=78.1

Q ss_pred             ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCC-------------CCCCccccccccCCce
Q 013310          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP-------------ETETPVSAVSIRRIPR  303 (445)
Q Consensus       237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~-------------~~~~~v~~im~~~~~~  303 (445)
                      ++.+++.++++. ++++.+.+.+++++||++++ ++++|+++.+|+.+...             ....++.++|..++.+
T Consensus         2 ~~~~~~~~~~l~-~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   79 (121)
T cd04584           2 DVVTITPTTTIA-EALELMREHKIRHLPVVDEE-GRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKEIMTKDVIT   79 (121)
T ss_pred             CCEEECCCCCHH-HHHHHHHHcCCCcccEECCC-CcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHHHhhCCCeE
Confidence            356788999998 99999999999999999875 79999999999875421             1125677888888899


Q ss_pred             eCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          304 VPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       304 V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      +++++++.++++.|.+++.+.+||+|
T Consensus        80 i~~~~~l~~~~~~~~~~~~~~~~V~~  105 (121)
T cd04584          80 VHPLDTVEEAALLMREHRIGCLPVVE  105 (121)
T ss_pred             ECCCCcHHHHHHHHHHcCCCeEEEee
Confidence            99999999999999999999999998

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.18  E-value=1.1e-10  Score=98.47  Aligned_cols=90  Identities=19%  Similarity=0.326  Sum_probs=77.7

Q ss_pred             ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCC--------------CCCccccccccCCc
Q 013310          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE--------------TETPVSAVSIRRIP  302 (445)
Q Consensus       237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~--------------~~~~v~~im~~~~~  302 (445)
                      +++.+++++++. ++.+.+.+++++++||+++  ++++|+++.+|+.+....              ...++.++|..++.
T Consensus         2 ~~~~i~~~~~~~-~~~~~l~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (121)
T cd04633           2 PVITVSPDDRVS-HARRLMLDHDISRLPVIEG--GKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSDIMTRPVI   78 (121)
T ss_pred             CCEEECCCCcHH-HHHHHHHHcCCCeeEEEEC--CEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHHHccCCce
Confidence            456788999998 9999999999999999985  799999999998764321              12467778878889


Q ss_pred             eeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          303 RVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       303 ~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      ++++++++.++++.|.+.+.+.+||+|
T Consensus        79 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~  105 (121)
T cd04633          79 TIEPDTSVSDVASLMLENNIGGLPVVD  105 (121)
T ss_pred             EECCCCcHHHHHHHHHHcCCCcccEEE
Confidence            999999999999999999999999998

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.17  E-value=1.5e-10  Score=95.72  Aligned_cols=88  Identities=23%  Similarity=0.380  Sum_probs=73.1

Q ss_pred             ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCC----CCccccccccCCceeCCCCCHHH
Q 013310          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET----ETPVSAVSIRRIPRVPSDMPLYD  312 (445)
Q Consensus       237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~----~~~v~~im~~~~~~V~~~~~l~~  312 (445)
                      ++.+++.++++. ++.+.|.+++++++||+++  ++++|+++.+|+.+.....    ..++.++|.+++.++++++++.+
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~   78 (110)
T cd04609           2 DVVSVAPDDTVS-QAIERMREYGVSQLPVVDD--GRVVGSIDESDLLDALIEGKAKFSLPVREVMGEPLPTVDPDAPIEE   78 (110)
T ss_pred             CcEEECCCCcHH-HHHHHHHHcCCceeeEeeC--CeeEEEEeHHHHHHHHhccccccCcCHHHHhcCCCceeCCCCcHHH
Confidence            356788999998 9999999999999999986  7899999999998753321    24677888788889999999999


Q ss_pred             HHHHHhhCCCeEEEEEc
Q 013310          313 ILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       313 al~~m~~~~~~~a~Vvd  329 (445)
                      +++.|++ +. .+||+|
T Consensus        79 ~~~~~~~-~~-~~~vv~   93 (110)
T cd04609          79 LSELLDR-GN-VAVVVD   93 (110)
T ss_pred             HHHHHHh-CC-ceeEEe
Confidence            9999988 33 368888

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=99.16  E-value=5.7e-11  Score=115.48  Aligned_cols=110  Identities=12%  Similarity=0.095  Sum_probs=96.9

Q ss_pred             cccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCC---CCCccccccccCCc
Q 013310          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE---TETPVSAVSIRRIP  302 (445)
Q Consensus       226 ~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~---~~~~v~~im~~~~~  302 (445)
                      .+|+++|.+. ++..+++++++. ++++.|.+.+++.+||++++ ++++|+++.+|+.+....   .+.+++++|.+++.
T Consensus       155 ~~v~~im~~~-~~~~v~~~~~v~-~a~~~~~~~~~~~~~Vvd~~-g~~~Givt~~dl~~~~~~~~~~~~~v~~im~~~~~  231 (268)
T TIGR00393       155 VKVKDLMQTT-DLPLIAPTTSFK-DALLEMSEKRLGSAIVCDEN-NQLVGVFTDGDLRRALLGGGSLKSEVRDFMTLGPK  231 (268)
T ss_pred             hhHHHHhCCC-CCCcCCCCCcHH-HHHHHHhhcCCcEEEEEeCC-CCEEEEEEcHHHHHHHhcCCcccCcHHHhCCCCCe
Confidence            6899999863 277899999998 99999999999999999865 789999999999865321   24678999988999


Q ss_pred             eeCCCCCHHHHHHHHhhCCCeEEEEEccCCCccCCC
Q 013310          303 RVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLP  338 (445)
Q Consensus       303 ~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Giv  338 (445)
                      ++++++++.++++.|.+++.+.+||+|+.|++.|+|
T Consensus       232 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI  267 (268)
T TIGR00393       232 TFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVL  267 (268)
T ss_pred             EECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEE
Confidence            999999999999999999999999999999999987

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>COG0517 FOG: CBS domain [General function prediction only]

Probab=99.13  E-value=3.9e-10  Score=94.31  Aligned_cols=95  Identities=21%  Similarity=0.354  Sum_probs=82.8

Q ss_pred             cccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCCC-C--ccccccccCCceeCC
Q 013310          230 EAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETE-T--PVSAVSIRRIPRVPS  306 (445)
Q Consensus       230 diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~-~--~v~~im~~~~~~V~~  306 (445)
                      ++|.  .+++++.++.++. ++...|.+++++.+||.++  ++++|+++.+|+.++..... .  ++.++|.+++.++++
T Consensus         3 ~~~~--~~~~~v~~~~~~~-~a~~~m~~~~~~~~~v~~~--~~l~Giit~~di~~~~~~~~~~~~~v~~v~~~~~~~~~~   77 (117)
T COG0517           3 DIMT--KDVITVKPDTSVR-DALLLMSENGVSAVPVVDD--GKLVGIITERDILRALAAGGKRLLPVKEVMTKPVVTVDP   77 (117)
T ss_pred             cccc--CCCEEECCCCcHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHhccCCccccHHHhccCCcEEECC
Confidence            4454  4688999999998 9999999999999999975  37999999999998765432 2  488888889999999


Q ss_pred             CCCHHHHHHHHhh-CCCeEEEEEc
Q 013310          307 DMPLYDILNEFQK-GSSHMAAVVK  329 (445)
Q Consensus       307 ~~~l~~al~~m~~-~~~~~a~Vvd  329 (445)
                      +.++.++++.|.+ ++.+.+||+|
T Consensus        78 ~~~~~~~~~~m~~~~~~~~lpVv~  101 (117)
T COG0517          78 DTPLEEALELMVERHKIRRLPVVD  101 (117)
T ss_pred             CCCHHHHHHHHHHHcCcCeEEEEE
Confidence            9999999999999 7999999999

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.13  E-value=4.3e-10  Score=92.32  Aligned_cols=91  Identities=21%  Similarity=0.319  Sum_probs=77.2

Q ss_pred             ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCCC----CccccccccCCceeCCCCCHHH
Q 013310          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETE----TPVSAVSIRRIPRVPSDMPLYD  312 (445)
Q Consensus       237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~----~~v~~im~~~~~~V~~~~~l~~  312 (445)
                      ++..++.+.++. ++++.+.+++++++||++++ ++++|+++.+|+........    ..+.++|..++.++++++++.+
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (113)
T cd02205           2 DVVTVSPDDTVA-EALRLMLEHGISGLPVVDDD-GRLVGIVTERDLLRALAEGGLDPLVTVGDVMTRDVVTVSPDTSLEE   79 (113)
T ss_pred             CceEecCCCCHH-HHHHHHHhcCCceEEEECCC-CCEEEEEeHHHHHHHHHhccCCccccHHHHhcCCceecCCCcCHHH
Confidence            456788999998 99999999899999999875 79999999999987543221    1145677888899999999999


Q ss_pred             HHHHHhhCCCeEEEEEc
Q 013310          313 ILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       313 al~~m~~~~~~~a~Vvd  329 (445)
                      +++.|.+.+.+.+||+|
T Consensus        80 ~~~~~~~~~~~~~~V~~   96 (113)
T cd02205          80 AAELMLEHGIRRLPVVD   96 (113)
T ss_pred             HHHHHHHcCCCEEEEEc
Confidence            99999999999999999

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.12  E-value=2.8e-10  Score=99.85  Aligned_cols=90  Identities=13%  Similarity=0.262  Sum_probs=77.2

Q ss_pred             ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCC----------------------------
Q 013310          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE----------------------------  288 (445)
Q Consensus       237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~----------------------------  288 (445)
                      ++++++.+.++. ++++.|.+.+++.+||+++  ++++|+++.+|+++....                            
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (143)
T cd04634           2 NPITCNADDTIS-DAARLLRENKISGAPVLDG--GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEE   78 (143)
T ss_pred             CcEEecCCCCHH-HHHHHHHHcCCCcceEeEC--CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHH
Confidence            467889999998 9999999999999999986  789999999998754211                            


Q ss_pred             --------CCCccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          289 --------TETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       289 --------~~~~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                              ...++.++|.+++.++++++++.++++.|++++.+.+||+|
T Consensus        79 ~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~  127 (143)
T cd04634          79 TKRALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVE  127 (143)
T ss_pred             HHHHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEE
Confidence                    12456677778899999999999999999999999999998

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.11  E-value=3.4e-10  Score=95.23  Aligned_cols=90  Identities=17%  Similarity=0.225  Sum_probs=73.8

Q ss_pred             ceEEeeCCCCccHHHHHHHHHcC-CcEEEeEeCCCCCEEEEEEhhhhhccCCC-------CCCccccccccCCceeCCCC
Q 013310          237 STFSLDVNSKLDWEAMGKILARG-HSRVPVYSGNPKNIIGLLLVKSLLTVRPE-------TETPVSAVSIRRIPRVPSDM  308 (445)
Q Consensus       237 ~vv~v~~~~sl~~e~l~~~~~~~-~s~~PV~~~~~~~ivGiv~~kDll~~~~~-------~~~~v~~im~~~~~~V~~~~  308 (445)
                      ++.++++++++. ++++.+...+ ++.+||+++  ++++|+++.+|+.+....       .+.++.++|..++.++++++
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~   78 (119)
T cd04598           2 PAPTVSPDTTVN-DVLERFERDPDLSALAVVDD--GRPVGLIMREALMELLSTPYGRALYGKKPVSEVMDPDPLIVEADT   78 (119)
T ss_pred             CcCccCCCCcHH-HHHHHHHhCCCccEEEEEEC--CeeEEEEEHHHHHHHHhchhhHHHHcCCcHHHhcCCCcEEecCCC
Confidence            355788999998 9999998877 899999986  799999999998754321       23578888888888999999


Q ss_pred             CHHHHHHHHhhCCCe---EEEEEc
Q 013310          309 PLYDILNEFQKGSSH---MAAVVK  329 (445)
Q Consensus       309 ~l~~al~~m~~~~~~---~a~Vvd  329 (445)
                      ++.++++.|.+++.+   ..+|++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~vv~  102 (119)
T cd04598          79 PLEEVSRLATGRDSQNLYDGFIVT  102 (119)
T ss_pred             CHHHHHHHHHcCCcccccccEEEe
Confidence            999999999988753   346777

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=99.07  E-value=2e-10  Score=117.70  Aligned_cols=103  Identities=16%  Similarity=0.177  Sum_probs=90.2

Q ss_pred             CcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCC----CCCCccccccc
Q 013310          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP----ETETPVSAVSI  298 (445)
Q Consensus       223 l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~----~~~~~v~~im~  298 (445)
                      +--.+|+++|+.  ..++|++.+++. ++.+.|.++|.+.+.+++++ +...|||+.+|+.....    +...+|+++|+
T Consensus       146 ~~~trv~~~~~~--~~~~v~~~~~i~-~aa~km~~~gv~s~v~l~~~-~~~~GIvT~~dl~~~v~~~g~~~~~~V~evmT  221 (610)
T COG2905         146 FILTRVGEVKTL--PAVTVSPQASIQ-DAARKMKDEGVSSLVVLDDS-GPLLGIVTRKDLRSRVIADGRSKTQKVSEVMT  221 (610)
T ss_pred             HHHHHHHHHhcC--CCcccCccCcHH-HHHHHHHhcCCCeEEEEcCC-CCccceeehHHHHHHHHhcCCCcccchhhhhc
Confidence            334578999985  577899999999 99999999999988888876 78999999999976532    23478999999


Q ss_pred             cCCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          299 RRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       299 ~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      .|+++|...+.+.+|+-.|.+++++.+||++
T Consensus       222 ~p~~svd~~~~~feAml~m~r~~I~hl~V~e  252 (610)
T COG2905         222 SPVISVDRGDFLFEAMLMMLRNRIKHLPVTE  252 (610)
T ss_pred             cCceeecCcchHHHHHHHHHHhCCceeeeec
Confidence            9999999999999999999999999999985

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=98.96  E-value=1.8e-09  Score=93.89  Aligned_cols=94  Identities=19%  Similarity=0.159  Sum_probs=77.1

Q ss_pred             ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCCCC---c------------ccccc----
Q 013310          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETET---P------------VSAVS----  297 (445)
Q Consensus       237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~~---~------------v~~im----  297 (445)
                      ++.++++++++. ++++.|.+++++.+||+|++ ++++|+++.+|++++......   .            +.++|    
T Consensus         2 ~~~~v~~~~~l~-ea~~~m~~~~~~~~~VvD~~-g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~   79 (133)
T cd04592           2 KYIKVSPTTTLK-EALNLMLDEKQSCVLVVDSD-DFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGI   79 (133)
T ss_pred             CceEECCCCCHH-HHHHHHHHcCCCEEEEECCC-CeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhhh
Confidence            577899999998 99999999999999999875 789999999999875432111   1            22344    


Q ss_pred             -----ccCCceeCCCCCHHHHHHHHhhCCCeEEEEEccCC
Q 013310          298 -----IRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKG  332 (445)
Q Consensus       298 -----~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G  332 (445)
                           ..+++++++++++.++++.|.+++.+.+||+|+.+
T Consensus        80 ~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~~  119 (133)
T cd04592          80 SYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRGV  119 (133)
T ss_pred             hhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCCc
Confidence                 36688999999999999999999999999998543

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=98.84  E-value=8.9e-09  Score=110.29  Aligned_cols=118  Identities=16%  Similarity=0.176  Sum_probs=99.6

Q ss_pred             ccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCC----------------
Q 013310          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE----------------  288 (445)
Q Consensus       225 ~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~----------------  288 (445)
                      ..+|+|+|++  +++++++++++. ++++.|.+++++.+||++++ ++++|+++.+|+.+...+                
T Consensus        67 ~~~V~dim~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~l~Givt~~di~~~~~~~~~~~~~~~~~~t~~~  142 (546)
T PRK14869         67 KPQVRDLEID--KPVTVSPDTSLK-EAWNLMDENNVKTLPVVDEE-GKLLGLVSLSDLARAYMDILDPEILSKSPTSLEN  142 (546)
T ss_pred             CCcHHHhcCC--CCcEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHHHHhhcchhhhhhcCCCHHH
Confidence            3689999985  688999999998 99999999999999999865 789999999998642000                


Q ss_pred             ---------------------------------------------C----------------------------------
Q 013310          289 ---------------------------------------------T----------------------------------  289 (445)
Q Consensus       289 ---------------------------------------------~----------------------------------  289 (445)
                                                                   +                                  
T Consensus       143 i~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~d~~~~ai~~~~~~lIlt~g~~~~~~v~~la~  222 (546)
T PRK14869        143 IIRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDREDIQLAAIEAGVRLLIITGGAPVSEDVLELAK  222 (546)
T ss_pred             HHHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHH
Confidence                                                         0                                  


Q ss_pred             ----------------------CCccccccc-cCCceeCCCCCHHHHHHHHhhCCCeEEEEEccCCCccCCCCCCCCCcc
Q 013310          290 ----------------------ETPVSAVSI-RRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKP  346 (445)
Q Consensus       290 ----------------------~~~v~~im~-~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Giv~~T~~di~  346 (445)
                                            ..+++++|. ++++++++++++.++.+.|.+++.+.+||+|++|+++|++  |.+|++
T Consensus       223 ~~~i~ii~t~~dt~~t~~~l~~~~~V~~iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGii--t~~dl~  300 (546)
T PRK14869        223 ENGVTVISTPYDTFTTARLINQSIPVSYIMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVI--SRYHLL  300 (546)
T ss_pred             hCCCeEEEecccHHHHHHHhhcCCCHHHhccCCCcEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEE--EHHHhh
Confidence                                  124667787 7889999999999999999999999999999999999999  888887


Q ss_pred             cc
Q 013310          347 KL  348 (445)
Q Consensus       347 ~~  348 (445)
                      +.
T Consensus       301 ~~  302 (546)
T PRK14869        301 SP  302 (546)
T ss_pred             cc
Confidence            53

>PF00571 CBS: CBS domain CBS domain web page

Probab=98.71  E-value=2.4e-08  Score=73.09  Aligned_cols=37  Identities=22%  Similarity=0.172  Sum_probs=34.8

Q ss_pred             cccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          293 VSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       293 v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      |+++|.++++++++++++.++++.|.+++.+.+||+|
T Consensus         1 v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d   37 (57)
T PF00571_consen    1 VGDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVD   37 (57)
T ss_dssp             HHHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEES
T ss_pred             CeECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEe
Confidence            3578888999999999999999999999999999999

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>PF00571 CBS: CBS domain CBS domain web page

Probab=98.53  E-value=1e-07  Score=69.68  Aligned_cols=54  Identities=26%  Similarity=0.508  Sum_probs=49.7

Q ss_pred             cccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhcc
Q 013310          228 AEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTV  285 (445)
Q Consensus       228 V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~  285 (445)
                      |+++|++  +++++++++++. ++++.|.+++++++||+|++ ++++|+++.+|++++
T Consensus         1 v~~~m~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~d~~-~~~~G~is~~dl~~~   54 (57)
T PF00571_consen    1 VGDIMTP--PPITVSPDDSLE-EALEIMRKNGISRLPVVDED-GKLVGIISRSDLLKA   54 (57)
T ss_dssp             HHHHSBS--SSEEEETTSBHH-HHHHHHHHHTSSEEEEESTT-SBEEEEEEHHHHHHH
T ss_pred             CeECCcC--CCEEEcCcCcHH-HHHHHHHHcCCcEEEEEecC-CEEEEEEEHHHHHhh
Confidence            5789986  788999999998 99999999999999999876 899999999999875

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=98.44  E-value=1e-06  Score=89.74  Aligned_cols=91  Identities=16%  Similarity=0.193  Sum_probs=74.4

Q ss_pred             ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCCC-----Cc-cccc------cccCCcee
Q 013310          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETE-----TP-VSAV------SIRRIPRV  304 (445)
Q Consensus       237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~-----~~-v~~i------m~~~~~~V  304 (445)
                      ++..+..++++. ++++.|...+++.+||++.+ ++.+|..+..|+.....++.     .. ++..      ...+++++
T Consensus       238 ~i~~i~~~~~v~-~al~~m~~~~is~lpvV~~~-g~~v~~~s~~Dv~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~vvtc  315 (381)
T KOG1764|consen  238 NIASISEDTPVI-EALKIMSERRISALPVVDEN-GKKVGNYSRFDVIHLAREGTYNNLDLSCLSEALSHRPIRFEGVVTC  315 (381)
T ss_pred             hheeecCCCcHH-HHHHHHHhcCcCcceEEcCC-CceecceehhhhhhhhhcCccCccchhHHHHHhhhcccccCccEEE
Confidence            588899999998 99999999999999999986 66799999999876543321     11 2111      12456789


Q ss_pred             CCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          305 PSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       305 ~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      .++.++.+++..|..+++|.+.|||
T Consensus       316 ~~~ssL~~vi~~lv~~~vHRl~VVd  340 (381)
T KOG1764|consen  316 RPTSTLAEVIDKLVAHRVHRLWVVD  340 (381)
T ss_pred             eecchHHHHHHHHHhcCceEEEEEc
Confidence            9999999999999999999999999

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=98.41  E-value=2.7e-06  Score=87.38  Aligned_cols=100  Identities=15%  Similarity=0.148  Sum_probs=77.9

Q ss_pred             cccccccccCCc-eEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCCCCccccccccCCcee
Q 013310          226 KTAEEAMTPIES-TFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRV  304 (445)
Q Consensus       226 ~~V~diMtpr~~-vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~im~~~~~~V  304 (445)
                      .++.++|.+... .+....+.+.. ++++.|...+.++..|+|++ ++++|+++.+++...... ...+.+.+.....++
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  350 (400)
T PRK10070        274 FSAKDIARRTPNGLIRKTPGFGPR-SALKLLQDEDREYGYVIERG-NKFVGAVSIDSLKTALTQ-QQGLDAALIDAPLAV  350 (400)
T ss_pred             cchhhhhhcCcccccccCCCCCHH-HHHHHHHhcCCceEEEEcCC-CcEEEEEeHHHHHhhhhc-CCchhhhhccCCcee
Confidence            567788853211 12233555666 89999999999999999875 799999999999765433 345667767778899


Q ss_pred             CCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          305 PSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       305 ~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      ++++++.+++..+.++... +||+|
T Consensus       351 ~~~~~~~~~~~~~~~~~~~-~~v~~  374 (400)
T PRK10070        351 DAQTPLSELLSHVGQAPCA-VPVVD  374 (400)
T ss_pred             CCCCCHHHHHHHHHhCCCc-EEEEC
Confidence            9999999999999997777 89999

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=98.28  E-value=2.9e-07  Score=76.79  Aligned_cols=111  Identities=18%  Similarity=0.262  Sum_probs=78.2

Q ss_pred             CCceeCCCCCHHHHHHHHhhCC-CeEEEEEccCCCccCCCCCCCCCcccccccCCCCCCCCcccccccccCCCceEeecc
Q 013310          300 RIPRVPSDMPLYDILNEFQKGS-SHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVD  378 (445)
Q Consensus       300 ~~~~V~~~~~l~~al~~m~~~~-~~~a~Vvde~G~~~Giv~~T~~di~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  378 (445)
                      ++.++++++++.++++.|.+++ .+.+||+|+.|++.|++  |.+|++....+...    ..+.............++.+
T Consensus         2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v--~~~dl~~~~~~~~~----~~~v~~~~~~~~~~~~v~~~   75 (114)
T cd04801           2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGII--SLADLRAIPTSQWA----QTTVIQVMTPAAKLVTVLSE   75 (114)
T ss_pred             CcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEE--EHHHHHHHHHhhcc----ccchhhhhcccccceEECCC
Confidence            5678999999999999997665 88999999999999999  99998876532211    11111111111234577778


Q ss_pred             CCCccccccccCCCCCCCCCccccccccCCCCCCceEEEeehhhHHH
Q 013310          379 RPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFE  425 (445)
Q Consensus       379 ~~i~~~~~~~~~~~~~~~~tl~g~~~~~~~~e~g~l~GIVT~~Dile  425 (445)
                      .++.+..+.+........-+++         ++|+++|++|.+|+++
T Consensus        76 ~~l~~a~~~~~~~~~~~l~Vv~---------~~~~~~Gvl~~~di~~  113 (114)
T cd04801          76 ESLAEVLKLLEEQGLDELAVVE---------DSGQVIGLITEADLLR  113 (114)
T ss_pred             CcHHHHHHHHHHCCCCeeEEEc---------CCCcEEEEEeccceec
Confidence            8888888877765543333333         4689999999999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=98.27  E-value=9.4e-06  Score=82.38  Aligned_cols=86  Identities=16%  Similarity=0.192  Sum_probs=71.3

Q ss_pred             EeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCCCCccccccccCCceeCCCCCHHHHHHHHhh
Q 013310          240 SLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQK  319 (445)
Q Consensus       240 ~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~im~~~~~~V~~~~~l~~al~~m~~  319 (445)
                      ...++.+.. ++++.+...+.....|++++ +++.|.++.+++...... ...+.+.+.....++++++++.+++..|.+
T Consensus       254 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (363)
T TIGR01186       254 TKTADKGPR-SALQLMRDERVDSLYVVDRQ-NKLVGVVDVESIKQARKK-AQGLQDVLIDDIYTVDAGTLLRETVRKVLK  330 (363)
T ss_pred             eecCCCCHH-HHHHHHHhcCCceEEEEcCC-CCEEEEEeHHHHHHHhhc-CCchhhhhccCCceECCCCcHHHHHHHHHh
Confidence            445666777 89999998899899999875 789999999998765433 235667777778899999999999999999


Q ss_pred             CCCeEEEEEc
Q 013310          320 GSSHMAAVVK  329 (445)
Q Consensus       320 ~~~~~a~Vvd  329 (445)
                      ++.. +||+|
T Consensus       331 ~~~~-~~v~~  339 (363)
T TIGR01186       331 AGIK-VPVVD  339 (363)
T ss_pred             CCCC-EEEEC
Confidence            9988 99999

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=98.15  E-value=2e-06  Score=89.48  Aligned_cols=105  Identities=21%  Similarity=0.245  Sum_probs=82.8

Q ss_pred             CcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCC----CEEEEEEhhhhhccCCC----------
Q 013310          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPK----NIIGLLLVKSLLTVRPE----------  288 (445)
Q Consensus       223 l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~----~ivGiv~~kDll~~~~~----------  288 (445)
                      +++.+++|+|.+  ++++++.-..+. ...+.++.+.|..+||+|+..+    ++.|++-.+.++.....          
T Consensus       579 mr~L~a~ev~~~--pvi~l~~~ekV~-~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~~  655 (762)
T KOG0474|consen  579 MRNLTAGEVMSK--PVICLNRVEKVA-VIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRST  655 (762)
T ss_pred             hhhhhHhhhccC--CeEEEechhhHH-HHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCccc
Confidence            367899999986  799999999998 8899999999999999996433    67788877776421100          


Q ss_pred             ----------------C----------------CCccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEcc
Q 013310          289 ----------------T----------------ETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKA  330 (445)
Q Consensus       289 ----------------~----------------~~~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde  330 (445)
                                      .                -.++..+|-..+++|++++++..++..|++-+.+.+.||+.
T Consensus       656 ~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~  729 (762)
T KOG0474|consen  656 FDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPK  729 (762)
T ss_pred             cCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEecC
Confidence                            0                01334445566789999999999999999999999999983

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=98.11  E-value=5e-06  Score=82.62  Aligned_cols=128  Identities=13%  Similarity=0.162  Sum_probs=101.8

Q ss_pred             CHHHHHHHHHhhcCcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCC--CCCEEEEEEhhhhhccCC
Q 013310          210 THDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGN--PKNIIGLLLVKSLLTVRP  287 (445)
Q Consensus       210 ~~~E~~~l~~~~~l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~--~~~ivGiv~~kDll~~~~  287 (445)
                      ++++..+++.+-.|..   .-++    +.+.+.++.++. ++++.-.+++++.+||.++.  ..+++|+|+.+|+-.. .
T Consensus        97 pe~QA~~v~~vK~~~~---g~~~----~p~v~sp~~tvg-~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~-~  167 (503)
T KOG2550|consen   97 PEDQADMVRRVKNYEN---GFIN----NPIVISPTTTVG-EVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFL-E  167 (503)
T ss_pred             HHHHHHHHHHHHHhhc---cccc----CCcccCCcccch-hhhhhcccccccccccccCCcccceeEEEEehhhhhhh-h
Confidence            3455666666655544   2233    344577889998 99999899999999999642  3579999999998654 4


Q ss_pred             CCCCccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEccCCCccCCCCCCCCCcccc
Q 013310          288 ETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKL  348 (445)
Q Consensus       288 ~~~~~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Giv~~T~~di~~~  348 (445)
                      ++...+.++|+...++.+...++.++=+.+++++..-+||||+.|+++.++  ++.|+++.
T Consensus       168 ~~~~~~~~vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~--~rtDl~k~  226 (503)
T KOG2550|consen  168 DNSLLVSDVMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAML--SRTDLMKN  226 (503)
T ss_pred             cccchhhhhcccccccccccccHHHHHHHHHhhhcCCcceeccCCceeeee--ehhhhhhh
Confidence            456788999988889999999999999999999999999999988888888  77777644

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=97.82  E-value=8.2e-06  Score=85.36  Aligned_cols=100  Identities=16%  Similarity=0.150  Sum_probs=81.7

Q ss_pred             cccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCCCCccccccccCCce
Q 013310          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPR  303 (445)
Q Consensus       224 ~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~im~~~~~~  303 (445)
                      .+.+++++|++  +++++++++++. ++++.|.++++..+||+|++ ++++|+|+.+|+++...+.  ..+++|.....+
T Consensus       193 ~~~~v~~im~~--~~~~v~~~~~~~-eal~~m~~~~~~~lpVVD~~-g~lvGiIt~~Dil~~l~~~--~~ed~~~~~gv~  266 (449)
T TIGR00400       193 PEEILSSIMRS--SVFSIVGVNDQE-EVARLIQKYDFLAVPVVDNE-GRLVGIVTVDDIIDVIQSE--ATEDFYMIAAVK  266 (449)
T ss_pred             CCCcHHHHhCC--CCeeECCCCCHH-HHHHHHHHcCCCEEeEEcCC-CeEEEEEEHHHHHHHHHhh--hHHHHHHhcCCC
Confidence            56689999986  577899999998 99999999999999999875 7899999999999865432  235666555554


Q ss_pred             eCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          304 VPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       304 V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      ..+++.+.+++..|.+++...++|.-
T Consensus       267 ~~~~~~l~~~~~~~~~~R~~wL~v~~  292 (449)
T TIGR00400       267 PLDDSYFDTSILVMAKNRIIWLLVLL  292 (449)
T ss_pred             CCcchhhhchHHHHHHhccchHHHHH
Confidence            44677889999999999998888863

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=97.73  E-value=5.7e-05  Score=62.69  Aligned_cols=55  Identities=15%  Similarity=0.151  Sum_probs=48.8

Q ss_pred             cccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (445)
Q Consensus       226 ~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~  284 (445)
                      .+++++|.+  ++.++++++++. ++++.|.+++.+++||++++ ++++|+++.+|+++
T Consensus        56 ~~v~~~~~~--~~~~v~~~~~l~-~al~~m~~~~~~~lpVvd~~-~~~~Giit~~di~~  110 (111)
T cd04603          56 LKVCEVYIV--PVPIVYCDSKVT-DLLRIFRETEPPVVAVVDKE-GKLVGTIYERELLR  110 (111)
T ss_pred             cChhheeec--CCcEECCCCcHH-HHHHHHHHcCCCeEEEEcCC-CeEEEEEEhHHhhc
Confidence            468899964  567899999998 99999999999999999865 78999999999875

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=97.72  E-value=1.8e-05  Score=84.85  Aligned_cols=118  Identities=11%  Similarity=0.106  Sum_probs=89.7

Q ss_pred             cccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCC---------------
Q 013310          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE---------------  288 (445)
Q Consensus       224 ~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~---------------  288 (445)
                      ...+|+++|+. +++++++++++++ ++.+.|.+++++.+||+|++ ++++|+++.+|++.....               
T Consensus       244 ~~~~V~~iM~~-~~~~~~~~~~~~~-~~~~~m~~~~~~~~PVvd~~-g~lvGiit~~dl~~~~~~~~iLVD~~e~~q~~~  320 (546)
T PRK14869        244 QSIPVSYIMTT-EDLVTFSKDDYLE-DVKEVMLKSRYRSYPVVDED-GKVVGVISRYHLLSPVRKKVILVDHNEKSQAVE  320 (546)
T ss_pred             cCCCHHHhccC-CCcEEECCCCcHH-HHHHHHHhcCCCceEEEcCC-CCEEEEEEHHHhhccccCceEEEcCcccccccc
Confidence            35789999982 3688999999998 99999999999999999875 799999999999864321               


Q ss_pred             ----C-------CCccccccccCCcee---CCCCCHHHHHHHHhhCCCeEEEEEccCCCccCCCCCCCCCccc
Q 013310          289 ----T-------ETPVSAVSIRRIPRV---PSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPK  347 (445)
Q Consensus       289 ----~-------~~~v~~im~~~~~~V---~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Giv~~T~~di~~  347 (445)
                          .       -.+++++|.+.+..+   +...+..-+.+.|++.+....|++.. ....||+  |+.+.++
T Consensus       321 ~~~~~~i~~iiDHH~~~~~~~~~pi~~~~~~~gst~tiv~~~~~~~~i~~~~~ia~-~ll~gIl--sDT~~f~  390 (546)
T PRK14869        321 GIEEAEILEIIDHHRLGDIQTSNPIFFRNEPVGSTSTIVARMYRENGIEPSPEIAG-LLLAAIL--SDTLLFK  390 (546)
T ss_pred             chhhceEEEEecCCccCCCCCCCCcEEEeeeeeeHHHHHHHHHHHcCCCCCHHHHH-HHHHHHH--HHhcCcc
Confidence                0       013455665555443   44556678888899999888888753 3578888  7766664

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=97.61  E-value=2.6e-05  Score=75.70  Aligned_cols=113  Identities=15%  Similarity=0.127  Sum_probs=81.6

Q ss_pred             CccccccccC-CceeCCCCCHHHHHHHHhhCCCeEEEEEccCCCccCCCCCCCCCcccccccCCCCCCCCcccccccccC
Q 013310          291 TPVSAVSIRR-IPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEK  369 (445)
Q Consensus       291 ~~v~~im~~~-~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Giv~~T~~di~~~i~~~~~~~~~~~~~~~~~~~~  369 (445)
                      .+++++|.++ ++.+++++++.++++.|.+.+.+.+||+|+.|++.|++  |.+|+.+......   ....+...  ...
T Consensus       155 ~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Giv--t~~dl~~~~~~~~---~~~~~v~~--im~  227 (268)
T TIGR00393       155 VKVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVF--TDGDLRRALLGGG---SLKSEVRD--FMT  227 (268)
T ss_pred             hhHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEE--EcHHHHHHHhcCC---cccCcHHH--hCC
Confidence            4678888888 88999999999999999999999999999999999999  9999886543211   11111111  123


Q ss_pred             CCceEeeccCCCccccccccCCCCCCCCCccccccccCCCCCCceEEEee
Q 013310          370 TESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIIT  419 (445)
Q Consensus       370 ~~~~~v~~~~~i~~~~~~~~~~~~~~~~tl~g~~~~~~~~e~g~l~GIVT  419 (445)
                      .....++++.++.+..+.+........-+++         ++|+++|+|+
T Consensus       228 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd---------~~g~l~GvI~  268 (268)
T TIGR00393       228 LGPKTFKLDALLLEALEFLERRKITSLVVVD---------DHNKVLGVLH  268 (268)
T ss_pred             CCCeEECCCCcHHHHHHHHHHcCCcEEEEEC---------CCCeEEEEEC
Confidence            3355688888888877777765444322344         5689999985

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=97.61  E-value=8.3e-05  Score=70.06  Aligned_cols=40  Identities=20%  Similarity=0.205  Sum_probs=38.0

Q ss_pred             CCccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          290 ETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       290 ~~~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      +.++.++|.+++.++.+++++.++.+.|.+++++-+||+|
T Consensus       171 k~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd  210 (294)
T COG2524         171 KEKVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVD  210 (294)
T ss_pred             cchhhhhccCCceEecCCccHHHHHHHHHHcCccCCceec
Confidence            4678999999999999999999999999999999999998

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=97.60  E-value=0.00013  Score=61.12  Aligned_cols=55  Identities=15%  Similarity=0.250  Sum_probs=48.7

Q ss_pred             cccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (445)
Q Consensus       226 ~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~  284 (445)
                      .+|+++|.+  ++.++++++++. ++++.|.++++..+||++++ ++++|+++.+|+.+
T Consensus        58 ~~v~dim~~--~~~~v~~~~~l~-~a~~~~~~~~~~~lpVvd~~-~~l~Givt~~dl~~  112 (113)
T cd04597          58 PRVRDVINR--KPVTARPNDPLR-EALNLMHEHNIRTLPVVDDD-GTPAGIITLLDLAE  112 (113)
T ss_pred             hhHHHhcCC--CCCEECCcCcHH-HHHHHHHHcCCCEEEEECCC-CeEEEEEEHHHhhc
Confidence            579999975  577899999998 99999999999999999865 78999999999864

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=97.59  E-value=0.00015  Score=59.92  Aligned_cols=59  Identities=22%  Similarity=0.336  Sum_probs=50.4

Q ss_pred             cCcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310          222 DLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (445)
Q Consensus       222 ~l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~  284 (445)
                      +....++.++|.+  ++.++++++++. ++++.+.+++.+++||++++ ++++|+++.+|+++
T Consensus        55 ~~~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~iG~it~~di~~  113 (114)
T cd04604          55 DILTLPVADVMTR--NPKTIDPDALAA-EALELMEENKITALPVVDDN-GRPVGVLHIHDLLR  113 (114)
T ss_pred             ccccCCHHHhhcc--CCeEECCCCcHH-HHHHHHHHcCCCEEEEECCC-CCEEEEEEHHHhhc
Confidence            3444579999976  467899999998 99999999999999999865 79999999999875

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.57  E-value=0.00012  Score=61.32  Aligned_cols=60  Identities=15%  Similarity=0.175  Sum_probs=50.6

Q ss_pred             cccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCC--CCEEEEEEhhhhhc
Q 013310          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNP--KNIIGLLLVKSLLT  284 (445)
Q Consensus       224 ~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~--~~ivGiv~~kDll~  284 (445)
                      .+.+++++|+...++.++++++++. ++++.|.+++++++||++++.  ++++|+|+.+|+++
T Consensus        56 ~~~~~~~~~~~~~~~~~v~~~~~l~-~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~  117 (118)
T cd04617          56 QKVPVGVIMTRMPNITTTTPEESVL-EAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK  117 (118)
T ss_pred             cCCCHHHHhCCCCCcEEECCCCcHH-HHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence            4567888997423578999999998 999999999999999998752  58999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=97.56  E-value=0.00023  Score=75.13  Aligned_cols=102  Identities=15%  Similarity=0.216  Sum_probs=70.7

Q ss_pred             CcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCCCCccccccccCC-
Q 013310          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRI-  301 (445)
Q Consensus       223 l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~im~~~~-  301 (445)
                      ..+.+|+++|++..+++++++++++. ++++.|.+++.+.+||+|++ ++++|+|+.+|+++..... ....+-.-+-. 
T Consensus       158 ~~~~~V~dIMt~~~~~itv~~d~~l~-eAl~lM~e~~i~~LPVVD~~-g~LvGIIT~~Dilk~~~~P-~a~~d~~grL~V  234 (502)
T PRK07107        158 SLDTKVKDFMTPFEKLVTANEGTTLK-EANDIIWDHKLNTLPIVDKN-GNLVYLVFRKDYDSHKENP-LELLDSSKRYVV  234 (502)
T ss_pred             CCCCCHHHHhCCCCCeEEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEhHHHHhcccCh-hhhhhhccCeee
Confidence            45678999999766788999999998 99999999999999999865 7899999999998864221 11111100100 


Q ss_pred             -ceeCCCCCHHHHHHHHhhCCCeEEEEE
Q 013310          302 -PRVPSDMPLYDILNEFQKGSSHMAAVV  328 (445)
Q Consensus       302 -~~V~~~~~l~~al~~m~~~~~~~a~Vv  328 (445)
                       ..+..+ ...+-.+.+.+.+.+.+.|-
T Consensus       235 ~~av~~~-~~~~ra~~Lv~aGvd~i~vd  261 (502)
T PRK07107        235 GAGINTR-DYAERVPALVEAGADVLCID  261 (502)
T ss_pred             eeccChh-hHHHHHHHHHHhCCCeEeec
Confidence             123222 24455666667777776553

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=97.53  E-value=0.00015  Score=60.75  Aligned_cols=39  Identities=23%  Similarity=0.235  Sum_probs=36.2

Q ss_pred             CccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          291 TPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       291 ~~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      .++.++|.+++.++++++++.++++.|.+++.+.+||+|
T Consensus        58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd   96 (113)
T cd04597          58 PRVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVD   96 (113)
T ss_pred             hhHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEEC
Confidence            468888888899999999999999999999999999999

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.50  E-value=0.00017  Score=60.11  Aligned_cols=56  Identities=23%  Similarity=0.326  Sum_probs=49.1

Q ss_pred             ccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (445)
Q Consensus       225 ~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~  284 (445)
                      +.+++++|..  ++.++++++++. ++++.|.+++..++||++++ ++++|+++.+|++.
T Consensus        58 ~~~v~~~~~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-~~~~Gvi~~~dl~~  113 (114)
T cd04619          58 TAPVENVMTR--AVVSCRPGDLLH-DVWQVMKQRGLKNIPVVDEN-ARPLGVLNARDALK  113 (114)
T ss_pred             cCCHHHHhcC--CCeeECCCCCHH-HHHHHHHHcCCCeEEEECCC-CcEEEEEEhHhhcc
Confidence            4578899964  677899999998 99999999999999999865 78999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=97.43  E-value=0.00012  Score=70.22  Aligned_cols=59  Identities=14%  Similarity=0.111  Sum_probs=53.6

Q ss_pred             CCccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEccCCCccCCCCCCCCCcccccc
Q 013310          290 ETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNE  350 (445)
Q Consensus       290 ~~~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Giv~~T~~di~~~i~  350 (445)
                      ..+..++|.|+++++++++++.++.++|++++++-+||+||+.+++|||  |..|+.+...
T Consensus       244 ~LtcadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiV--t~~dl~~~a~  302 (382)
T COG3448         244 ELTCADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIV--TQRDLLKHAR  302 (382)
T ss_pred             cccHHHhcCccceecCCcCChHHHHHHHHHcCcccccccccccceeeee--eHHHHhhccC
Confidence            3566789999999999999999999999999999999999999999999  9998876443

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.41  E-value=0.00028  Score=57.57  Aligned_cols=46  Identities=20%  Similarity=0.205  Sum_probs=41.7

Q ss_pred             eEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310          238 TFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (445)
Q Consensus       238 vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~  284 (445)
                      +.++++++++. ++++.|.+++.+++||++++.++++|+++.+|+++
T Consensus        52 ~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~   97 (98)
T cd04618          52 LVSIHPERSLF-DAALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK   97 (98)
T ss_pred             eEEeCCCCcHH-HHHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence            67899999998 99999999999999999865478999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=97.40  E-value=0.00048  Score=72.85  Aligned_cols=109  Identities=18%  Similarity=0.238  Sum_probs=79.0

Q ss_pred             ccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCCC---CccccccccCC
Q 013310          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETE---TPVSAVSIRRI  301 (445)
Q Consensus       225 ~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~---~~v~~im~~~~  301 (445)
                      +.+++++|++ .+++++++++++. ++++.|.+++.+.+||++++ ++++|+++.+|+++.....+   ..-..++....
T Consensus       146 ~~~V~dim~~-~~~v~v~~~~sl~-eal~~m~~~~~~~lpVVDe~-g~lvGiIT~~DLl~~~~~p~a~~d~~g~l~V~aa  222 (486)
T PRK05567        146 SQPVSEVMTK-ERLVTVPEGTTLE-EALELLHEHRIEKLPVVDDN-GRLKGLITVKDIEKAEEFPNACKDEQGRLRVGAA  222 (486)
T ss_pred             CCcHHHHcCC-CCCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEEhHHhhhhhhCCCcccccCCCEEEEee
Confidence            3579999983 3688999999998 99999999999999999876 79999999999987542211   11112223333


Q ss_pred             ceeCCCCCHHHHHHHHhhCCCeEEEEEccCCCccCCC
Q 013310          302 PRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLP  338 (445)
Q Consensus       302 ~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Giv  338 (445)
                      ..++++  -.+..+.|.+.+.+.+.|-..+|...|++
T Consensus       223 i~~~~~--~~e~a~~L~~agvdvivvD~a~g~~~~vl  257 (486)
T PRK05567        223 VGVGAD--NEERAEALVEAGVDVLVVDTAHGHSEGVL  257 (486)
T ss_pred             cccCcc--hHHHHHHHHHhCCCEEEEECCCCcchhHH
Confidence            334442  27888889999999664443467777777

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=97.32  E-value=0.00051  Score=72.20  Aligned_cols=95  Identities=16%  Similarity=0.199  Sum_probs=71.2

Q ss_pred             cccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCCCCcccc----ccccCC
Q 013310          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSA----VSIRRI  301 (445)
Q Consensus       226 ~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~----im~~~~  301 (445)
                      .+++++|++  ++.++++++++. ++++.|.+++...+||+|++ ++++|+|+.+|+++.....  +..+    .+....
T Consensus       148 ~~V~diMt~--~~itV~~d~sL~-eAl~lM~~~~i~~LPVVD~~-g~lvGIIT~~DIl~~~~~~--~~~~~~g~l~V~aa  221 (479)
T PRK07807        148 TQVRDVMST--DLVTLPAGTDPR-EAFDLLEAARVKLAPVVDAD-GRLVGVLTRTGALRATIYT--PAVDAAGRLRVAAA  221 (479)
T ss_pred             CCHHHhccC--CceEECCCCcHH-HHHHHHHhcCCCEEEEEcCC-CeEEEEEEHHHHHHHhhCC--chhhhhhccchHhh
Confidence            579999985  688999999998 99999999999999999865 7899999999999864322  2211    111222


Q ss_pred             ceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          302 PRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       302 ~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                        +.......+.++.|.+.+.+. +++|
T Consensus       222 --v~~~~~~~~~a~~Lv~aGvd~-i~~D  246 (479)
T PRK07807        222 --VGINGDVAAKARALLEAGVDV-LVVD  246 (479)
T ss_pred             --hccChhHHHHHHHHHHhCCCE-EEEe
Confidence              222334678888888888888 4556

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=97.30  E-value=0.00044  Score=57.19  Aligned_cols=55  Identities=20%  Similarity=0.392  Sum_probs=48.1

Q ss_pred             cccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (445)
Q Consensus       226 ~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~  284 (445)
                      .+++++|.+  .+.++++++++. ++++.|.+++.+++||++++ ++++|+++.+|++.
T Consensus        58 ~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~di~~  112 (113)
T cd04607          58 DPVSEVMNR--NPITAKVGSSRE-EILALMRERSIRHLPILDEE-GRVVGLATLDDLLS  112 (113)
T ss_pred             CCHHHhhcC--CCEEEcCCCCHH-HHHHHHHHCCCCEEEEECCC-CCEEEEEEhHHhcc
Confidence            468899965  477899999998 99999999999999999865 78999999999864

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=97.29  E-value=0.00039  Score=57.90  Aligned_cols=58  Identities=21%  Similarity=0.399  Sum_probs=50.6

Q ss_pred             CcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (445)
Q Consensus       223 l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~  284 (445)
                      +.+.++.++|.+  ++.+++.++++. ++++.|.+++.+++||++++ ++++|+++.+|+++
T Consensus        64 ~~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvvt~~di~~  121 (122)
T cd04585          64 LSKIKVSDIMTR--DPITVSPDASVE-EAAELMLERKISGLPVVDDQ-GRLVGIITESDLFR  121 (122)
T ss_pred             hcccCHHHhccC--CCeEeCCCCcHH-HHHHHHHHcCCCceeEECCC-CcEEEEEEHHHhhh
Confidence            345678999975  578899999998 99999999999999999864 78999999999875

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.28  E-value=0.00056  Score=56.70  Aligned_cols=56  Identities=20%  Similarity=0.298  Sum_probs=47.4

Q ss_pred             ccccccccccCCceEEeeCC--CCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310          225 EKTAEEAMTPIESTFSLDVN--SKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (445)
Q Consensus       225 ~~~V~diMtpr~~vv~v~~~--~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~  284 (445)
                      +.++.++|.+  ++.+++++  +++. ++++.|.+++...+||++++ ++++|+++.+|+++
T Consensus        57 ~~~i~~~~~~--~~~~v~~~~~~~l~-~a~~~~~~~~~~~~pVvd~~-~~~~Gvit~~dl~~  114 (115)
T cd04620          57 DLPIGEVMTQ--PVVTLQESEIQDIF-TALSLFRQHQIRHLPVLDDQ-GQLIGLVTAESIRQ  114 (115)
T ss_pred             ccCHHHhcCC--CcEEEecccccCHH-HHHHHHHHhCCceEEEEcCC-CCEEEEEEhHHhhc
Confidence            4578899964  56778776  6787 99999999999999999865 78999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=97.27  E-value=0.00045  Score=58.01  Aligned_cols=58  Identities=19%  Similarity=0.434  Sum_probs=50.7

Q ss_pred             CcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (445)
Q Consensus       223 l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~  284 (445)
                      ....+++++|.+  ++.++++++++. ++++.|.+++.+++||++++ ++++|+++.+|++.
T Consensus        66 ~~~~~i~~~~~~--~~~~~~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-g~~~Gvit~~di~~  123 (124)
T cd04600          66 DKPETVGDIMSP--PVVTVRPDTPIA-ELVPLLADGGHHHVPVVDED-RRLVGIVTQTDLIA  123 (124)
T ss_pred             cccccHHHhccC--CCeeeCCCCcHH-HHHHHHHhcCCCceeEEcCC-CCEEEEEEhHHhhc
Confidence            355678999974  578899999998 99999999999999999864 78999999999875

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.23  E-value=0.00034  Score=59.34  Aligned_cols=60  Identities=23%  Similarity=0.357  Sum_probs=46.7

Q ss_pred             cccccccccccCCceEEee----CCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310          224 TEKTAEEAMTPIESTFSLD----VNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (445)
Q Consensus       224 ~~~~V~diMtpr~~vv~v~----~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~  284 (445)
                      .+.+++++|.+....+.++    +++++. ++++.|.+++.+.+||++++.++++|+|+.+|+++
T Consensus        62 ~~~~v~~im~~~~~~~~~~~~~~~~~~l~-~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~  125 (126)
T cd04640          62 SELTVADVMTPKEDLKALDLEELENASVG-DVVETLKASGRQHALVVDREHHQIRGIISTSDIAR  125 (126)
T ss_pred             hheEHHHhcCchhhhccccHHHhccCcHH-HHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence            3467899997532233333    578888 99999999999999999864357999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.22  E-value=0.00052  Score=56.51  Aligned_cols=55  Identities=18%  Similarity=0.389  Sum_probs=48.0

Q ss_pred             ccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (445)
Q Consensus       225 ~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~  284 (445)
                      +.+++++|.+  ++.+++.++++. ++++.|.+++..++||+++  ++++|+++.+|+++
T Consensus        57 ~~~v~~~~~~--~~~~v~~~~~l~-~a~~~m~~~~~~~l~Vv~~--~~~~Gvvt~~dl~~  111 (112)
T cd04625          57 DTTVRAIMNP--EPIVASPDDSID-EVRRLMVERHLRYLPVLDG--GTLLGVISFHDVAK  111 (112)
T ss_pred             cCCHHHHhCC--CCeEECCCCCHH-HHHHHHHHcCCCeeeEEEC--CEEEEEEEHHHhhc
Confidence            4578899964  577899999998 9999999999999999984  78999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=97.22  E-value=0.00056  Score=56.13  Aligned_cols=56  Identities=20%  Similarity=0.410  Sum_probs=49.3

Q ss_pred             ccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (445)
Q Consensus       225 ~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~  284 (445)
                      +.+++++|.+  ++.+++++.++. ++++.|.+++...+||++++ ++++|+++.+|+++
T Consensus        52 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~di~~  107 (108)
T cd04596          52 DTTIEKVMTK--NPITVNPKTSVA-SVAHMMIWEGIEMLPVVDDN-KKLLGIISRQDVLK  107 (108)
T ss_pred             cccHHHHhcC--CCeEECCCCCHH-HHHHHHHHcCCCeeeEEcCC-CCEEEEEEHHHhhc
Confidence            4578999975  577899999998 99999999999999999865 78999999999875

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=97.21  E-value=0.00059  Score=55.60  Aligned_cols=56  Identities=21%  Similarity=0.385  Sum_probs=48.4

Q ss_pred             ccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (445)
Q Consensus       225 ~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~  284 (445)
                      +.+++++|.+  .+.++++++++. ++++.|.+++.+++||++++ ++++|+++.+|+++
T Consensus        51 ~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-g~~~Gvi~~~di~~  106 (107)
T cd04610          51 DETVEEIMSK--DLVVAVPEMDIM-DAARVMFRTGISKLPVVDEN-NNLVGIITNTDVIR  106 (107)
T ss_pred             cccHHHhCCC--CCeEECCCCCHH-HHHHHHHHhCCCeEeEECCC-CeEEEEEEHHHhhc
Confidence            3468899965  467889999998 99999999999999999875 78999999999875

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=97.18  E-value=0.00036  Score=61.20  Aligned_cols=46  Identities=13%  Similarity=0.145  Sum_probs=38.3

Q ss_pred             ccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEccCCCccCCC
Q 013310          292 PVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLP  338 (445)
Q Consensus       292 ~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Giv  338 (445)
                      ..+.+|.+|++++.+++++.++++.|++++++.+||+++ |+++|-|
T Consensus        66 ta~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~-~k~VGsI  111 (187)
T COG3620          66 TAKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE-DKVVGSI  111 (187)
T ss_pred             eHhhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeC-Ceeeeee
Confidence            445689999999999999999999999999999999983 3333333

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=97.18  E-value=0.0012  Score=69.42  Aligned_cols=96  Identities=10%  Similarity=0.127  Sum_probs=68.1

Q ss_pred             cccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCCCCccccccccCC--ce
Q 013310          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRI--PR  303 (445)
Q Consensus       226 ~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~im~~~~--~~  303 (445)
                      .+++++|++  +++++++++++. ++++.|.+++...+||++++ ++++|+|+.+|+++.....  +..+..-+..  -.
T Consensus       146 ~~V~dIMt~--~litv~~~~sL~-eAl~lM~~~~i~~LPVVD~~-g~LvGIIT~~DLl~~~~~~--~~~d~~grl~Vgaa  219 (475)
T TIGR01303       146 TQVRDIMST--DLVTAPADTEPR-KAFDLLEHAPRDVAPLVDAD-GTLAGILTRTGALRATIYT--PATDAAGRLRIGAA  219 (475)
T ss_pred             CCHHHHccC--CceEeCCCCcHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHHhCC--chhhhccCceehhe
Confidence            579999985  688999999998 99999999999999999865 7899999999998753321  2211100000  01


Q ss_pred             eCCCCCHHHHHHHHhhCCCeEEEE
Q 013310          304 VPSDMPLYDILNEFQKGSSHMAAV  327 (445)
Q Consensus       304 V~~~~~l~~al~~m~~~~~~~a~V  327 (445)
                      +.......+.++.+.+.+...+.+
T Consensus       220 v~~~~~~~~ra~~Lv~aGVd~i~~  243 (475)
T TIGR01303       220 VGINGDVGGKAKALLDAGVDVLVI  243 (475)
T ss_pred             eeeCccHHHHHHHHHHhCCCEEEE
Confidence            333345567777777777766443

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.17  E-value=0.00073  Score=56.91  Aligned_cols=52  Identities=23%  Similarity=0.254  Sum_probs=45.0

Q ss_pred             cccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhh
Q 013310          228 AEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLL  283 (445)
Q Consensus       228 V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll  283 (445)
                      +.++|.+  ++.++++++++. ++++.|.+++.+++||++++ ++++|+|+.+|+.
T Consensus        70 ~~~~~~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-~~~vGiit~~di~  121 (123)
T cd04627          70 DLTIGTS--DVISINGDQPLI-DALHLMHNEGISSVAVVDNQ-GNLIGNISVTDVR  121 (123)
T ss_pred             hcccCcC--CceEeCCCCCHH-HHHHHHHHcCCceEEEECCC-CcEEEEEeHHHhh
Confidence            3457754  577899999998 99999999999999999875 7899999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=97.17  E-value=0.001  Score=45.22  Aligned_cols=29  Identities=21%  Similarity=0.255  Sum_probs=26.8

Q ss_pred             CceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          301 IPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       301 ~~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      +.++++++++.++++.|.+++.+.+||++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~   30 (49)
T smart00116        2 VVTVSPDTTLEEALELLREHGIRRLPVVD   30 (49)
T ss_pred             ceEecCCCcHHHHHHHHHHhCCCcccEEC
Confidence            56789999999999999999999999998

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.16  E-value=0.00069  Score=56.19  Aligned_cols=56  Identities=16%  Similarity=0.262  Sum_probs=49.0

Q ss_pred             cccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (445)
Q Consensus       224 ~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~  284 (445)
                      .+.+++++|.+  ++.++++++++. ++++.|.+++...+||+++  ++++|+++.+|+++
T Consensus        58 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~--~~~~Gvi~~~dl~~  113 (114)
T cd04630          58 DRVNVYEIMTK--PLISVSPDMDIK-YCARLMERTNIRRAPVVEN--NELIGIISLTDIFL  113 (114)
T ss_pred             CccCHHHHhcC--CCeeECCCCCHH-HHHHHHHHcCCCEeeEeeC--CEEEEEEEHHHhhc
Confidence            34578899964  578999999998 9999999999999999986  78999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.16  E-value=0.0007  Score=55.57  Aligned_cols=55  Identities=22%  Similarity=0.475  Sum_probs=48.5

Q ss_pred             ccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (445)
Q Consensus       225 ~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~  284 (445)
                      +.+++++|.+  ++.+++++.++. ++++.+.+++.+++||+++  ++++|+++.+|+++
T Consensus        58 ~~~~~~~~~~--~~~~v~~~~~~~-~~l~~~~~~~~~~~~Vv~~--~~~~Gvit~~di~~  112 (113)
T cd04623          58 DTPVSEIMTR--NVITVTPDDTVD-EAMALMTERRFRHLPVVDG--GKLVGIVSIGDVVK  112 (113)
T ss_pred             ccCHHHhcCC--CcEEECCCCcHH-HHHHHHHHcCCCEeEEEeC--CEEEEEEEHHHhhc
Confidence            4578999965  577899999998 9999999999999999986  78999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=97.14  E-value=0.0011  Score=70.26  Aligned_cols=102  Identities=13%  Similarity=0.193  Sum_probs=70.5

Q ss_pred             cccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCCC--CccccccccCC
Q 013310          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETE--TPVSAVSIRRI  301 (445)
Q Consensus       224 ~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~--~~v~~im~~~~  301 (445)
                      .+.+|+++|++...++++++++++. ++++.|.+++..++||++++ ++++|+|+.+|+++......  .+..|-.-+-.
T Consensus       161 ~~~~V~eIMt~~~~lvtv~~~~sL~-eAl~~m~~~~~~~LPVVD~~-g~LvGvITr~DIlk~~~~p~~~~~~~d~~~~l~  238 (505)
T PLN02274        161 RETKLSEVMTSDDDLVTAPAGIDLE-EAEAVLKDSKKGKLPLVNED-GELVDLVTRTDVKRVKGYPKLGKPSVGKDGKLL  238 (505)
T ss_pred             cCCcHHHHhccCCCcEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHhhCcCccccccCCCCCEE
Confidence            4678999999765688999999998 99999999999999999865 78999999999987643211  11111111100


Q ss_pred             --ceeCCCCCHHHHHHHHhhCCCeEEEE
Q 013310          302 --PRVPSDMPLYDILNEFQKGSSHMAAV  327 (445)
Q Consensus       302 --~~V~~~~~l~~al~~m~~~~~~~a~V  327 (445)
                        ..|.....-.+-.+.+.+.+..++.+
T Consensus       239 vgaavg~~~~~~~r~~~l~~ag~d~i~i  266 (505)
T PLN02274        239 VGAAIGTRESDKERLEHLVKAGVDVVVL  266 (505)
T ss_pred             EEEEEcCCccHHHHHHHHHHcCCCEEEE
Confidence              12333333455666666777777644

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=97.13  E-value=0.0011  Score=53.96  Aligned_cols=54  Identities=15%  Similarity=0.314  Sum_probs=46.8

Q ss_pred             ccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310          227 TAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (445)
Q Consensus       227 ~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~  284 (445)
                      +++++|.+  ....+++++++. ++++.|.+++.+.+||++++ ++++|+++.+|++.
T Consensus        52 ~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvi~~~~l~~  105 (106)
T cd04582          52 CCGDHAEP--FKVTVSVDDDLR-IVLSRMFAHDMSWLPCVDED-GRYVGEVTQRSIAD  105 (106)
T ss_pred             chhhhccc--CCEEECCCCCHH-HHHHHHHHCCCCeeeEECCC-CcEEEEEEHHHhhc
Confidence            47788875  356789999998 99999999999999999875 78999999999864

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.13  E-value=0.00082  Score=55.42  Aligned_cols=57  Identities=19%  Similarity=0.345  Sum_probs=48.9

Q ss_pred             cccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (445)
Q Consensus       224 ~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~  284 (445)
                      .+.++.++|.+  ++.+++.++++. ++++.|.+++..++||++++ ++++|+++.+|+++
T Consensus        56 ~~~~i~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~~-g~~~Gvvt~~dl~~  112 (113)
T cd04615          56 KDAKVREVMNS--PVITIDANDSIA-KARWLMSNNNISRLPVLDDK-GKVGGIVTEDDILR  112 (113)
T ss_pred             cCCcHHHhccC--CceEECCCCcHH-HHHHHHHHcCCCeeeEECCC-CeEEEEEEHHHhhc
Confidence            34578888964  577899999998 99999999999999999865 78999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=97.13  E-value=0.00084  Score=67.21  Aligned_cols=58  Identities=22%  Similarity=0.367  Sum_probs=51.5

Q ss_pred             CcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhcc
Q 013310          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTV  285 (445)
Q Consensus       223 l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~  285 (445)
                      +.+.+|+++|++  ++.++++++++. ++++.|.+++..++||+++  ++++|+|+.+|++++
T Consensus       266 ~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVv~~--~~lvGiit~~dil~~  323 (326)
T PRK10892        266 LRQASIADVMTP--GGIRVRPGILAV-DALNLMQSRHITSVLVADG--DHLLGVLHMHDLLRA  323 (326)
T ss_pred             cccCCHHHhcCC--CCEEECCCCCHH-HHHHHHHHCCCcEEEEeeC--CEEEEEEEhHHhHhc
Confidence            456789999986  678999999998 9999999999999999974  689999999999864

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.12  E-value=0.00089  Score=55.13  Aligned_cols=55  Identities=20%  Similarity=0.361  Sum_probs=47.9

Q ss_pred             cccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (445)
Q Consensus       226 ~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~  284 (445)
                      .+++++|.+  ++.+++.++++. ++++.|.+++.+++||++++ ++++|+++.+|+++
T Consensus        58 ~~~~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~it~~di~~  112 (113)
T cd04622          58 TTVGDVMTR--GVVTVTEDDDVD-EAARLMREHQVRRLPVVDDD-GRLVGIVSLGDLAR  112 (113)
T ss_pred             CCHHHhccC--CccEECCCCCHH-HHHHHHHHcCCCeeeEECCC-CcEEEEEEHHHhhc
Confidence            358899975  577899999998 99999999999999999865 78999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.11  E-value=0.00083  Score=58.07  Aligned_cols=56  Identities=23%  Similarity=0.348  Sum_probs=49.2

Q ss_pred             cccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (445)
Q Consensus       224 ~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~  284 (445)
                      .+.+++++|.+  ++.++++++++. ++++.|.+++++.+||+++  ++++|+|+.+|+++
T Consensus        79 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~l~Vv~~--~~~~Gvit~~di~~  134 (135)
T cd04621          79 VPLVAEDIMTE--EIITVSPNDDVV-DAAKLMLEANISGLPVVDN--DNIVGVITKTDICR  134 (135)
T ss_pred             ccccHHHhcCC--CCeEECCCCCHH-HHHHHHHHcCCCEEEEEeC--CEEEEEEEHHHHhh
Confidence            35679999975  567899999998 9999999999999999985  78999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=97.10  E-value=0.0026  Score=66.97  Aligned_cols=101  Identities=16%  Similarity=0.204  Sum_probs=71.6

Q ss_pred             cccccccC---CceEEeeCC-CCccHHHHHHHHHcCCcEEEeEe-CCCCCEEEEEEhhhhhccCC------C--------
Q 013310          228 AEEAMTPI---ESTFSLDVN-SKLDWEAMGKILARGHSRVPVYS-GNPKNIIGLLLVKSLLTVRP------E--------  288 (445)
Q Consensus       228 V~diMtpr---~~vv~v~~~-~sl~~e~l~~~~~~~~s~~PV~~-~~~~~ivGiv~~kDll~~~~------~--------  288 (445)
                      ..++|.|+   .....++.+ .+++ +....|.++.++.+||+- ++.+.++|++..+|+.....      +        
T Consensus       545 ~~~v~~p~~~~~~L~~i~~~s~tl~-~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~~  623 (696)
T KOG0475|consen  545 AIPVMEPCRSESCLIVITQDSMTLE-DLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSIY  623 (696)
T ss_pred             hhhhhchhcCchhheeccccceeHH-HHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceecccc
Confidence            44555543   234455544 7787 888888899999999875 44578999999999853321      0        


Q ss_pred             -------------CCCccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          289 -------------TETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       289 -------------~~~~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                                   +....+++|--.+.+|..++|...++++|++-+.+...|..
T Consensus       624 f~~~~~~~~~~~~~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~  677 (696)
T KOG0475|consen  624 FNDPSPSAVAGIPSRLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVTK  677 (696)
T ss_pred             cCCCCccccCCCCCCcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEcc
Confidence                         01235566655677899999999999999988888877753

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.08  E-value=0.0014  Score=53.05  Aligned_cols=46  Identities=20%  Similarity=0.247  Sum_probs=38.0

Q ss_pred             cCCceeCCCCCHHHHHHHHhhCCCeEEEEEccCCCccCCCCCCCCCcc
Q 013310          299 RRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKP  346 (445)
Q Consensus       299 ~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Giv~~T~~di~  346 (445)
                      ++++.+++++++.++++.|.+++.+.+||+|+.|+..|++  |.+|+.
T Consensus         1 ~~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv--~~~dl~   46 (96)
T cd04614           1 RNVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGII--TERDLI   46 (96)
T ss_pred             CCccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEE--EHHHHh
Confidence            3577899999999999999989999999999766666776  555554

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.08  E-value=0.00083  Score=56.46  Aligned_cols=57  Identities=16%  Similarity=0.378  Sum_probs=49.6

Q ss_pred             cccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (445)
Q Consensus       224 ~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~  284 (445)
                      .+.+++++|.+  ++.++++++++. ++++.|.+.+.+.+||++++ ++++|+|+.+|+++
T Consensus        68 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~~~~-~~~~Gvit~~di~~  124 (125)
T cd04631          68 INEPVRSIMTR--NVITITPDDSIK-DAAELMLEKRVGGLPVVDDD-GKLVGIVTERDLLK  124 (125)
T ss_pred             hhcCHHHHhcC--CceEeCCCCcHH-HHHHHHHHcCCceEEEEcCC-CcEEEEEEHHHhhc
Confidence            44578889864  588999999998 99999999999999999865 78999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=97.07  E-value=0.0011  Score=54.90  Aligned_cols=55  Identities=25%  Similarity=0.541  Sum_probs=47.3

Q ss_pred             ccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCC-CCCEEEEEEhhhhhc
Q 013310          227 TAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGN-PKNIIGLLLVKSLLT  284 (445)
Q Consensus       227 ~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~-~~~ivGiv~~kDll~  284 (445)
                      +++++|.+  ++.++++++++. ++++.|.+++...+||++++ .++++|+++.+|+++
T Consensus        59 ~~~~~~~~--~~~~v~~~~~l~-~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~  114 (115)
T cd04593          59 AVDEVATP--PLLTVHPDEPLA-HALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL  114 (115)
T ss_pred             cHHHhccC--CceEECCCCCHH-HHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence            47788864  577899999998 99999999999999999864 268999999999875

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=97.05  E-value=0.001  Score=66.34  Aligned_cols=57  Identities=21%  Similarity=0.306  Sum_probs=50.6

Q ss_pred             ccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhcc
Q 013310          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTV  285 (445)
Q Consensus       225 ~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~  285 (445)
                      +.+|+++|++  ++.++++++++. ++++.|.+++..++||++++ ++++|+|+.+|++++
T Consensus       262 ~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-~~lvGvIt~~di~~~  318 (321)
T PRK11543        262 TTPVNEAMTR--GGTTLQAQSRAI-DAKEILMKRKITAAPVVDEN-GKLTGAINLQDFYQA  318 (321)
T ss_pred             CCcHHHhcCC--CCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHhc
Confidence            4568999985  577899999998 99999999999999999865 689999999999864

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=97.05  E-value=0.0022  Score=67.84  Aligned_cols=106  Identities=14%  Similarity=0.187  Sum_probs=72.4

Q ss_pred             cccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCCC---CccccccccC
Q 013310          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETE---TPVSAVSIRR  300 (445)
Q Consensus       224 ~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~---~~v~~im~~~  300 (445)
                      .+.+|+++|++..++++++++.++. ++++.|.+++...+||++++ ++++|+|+.+|+++......   ..-+.+... 
T Consensus       157 ~~~~V~diMt~~~~lvtv~~~~sl~-eAl~lm~e~~i~~LPVVd~~-g~liGIIT~~DIl~~~~~p~a~~D~~GrL~Vg-  233 (495)
T PTZ00314        157 KSTPVSEVMTPREKLVVGNTPISLE-EANEVLRESRKGKLPIVNDN-GELVALVSRSDLKKNRGYPNASLDSNGQLLVG-  233 (495)
T ss_pred             CCCCHHHhhCCcCCceEeCCCCCHH-HHHHHHHHcCCCeEEEEcCC-CcEEEEEEehHhhhcccCchhhhccCCCEEEE-
Confidence            3568999999766789999999998 99999999999999999875 78999999999997643111   000111111 


Q ss_pred             CceeCCCCCHHHHHHHHhhCCCeEEEEEccCCC
Q 013310          301 IPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGK  333 (445)
Q Consensus       301 ~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~  333 (445)
                       ..+.......+-++.+.+.+...+.|--.+|.
T Consensus       234 -aavg~~~~~~~~~~~l~~ag~d~i~id~a~G~  265 (495)
T PTZ00314        234 -AAISTRPEDIERAAALIEAGVDVLVVDSSQGN  265 (495)
T ss_pred             -EEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Confidence             12332223356666677777777655333443

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=97.04  E-value=0.0011  Score=54.55  Aligned_cols=57  Identities=14%  Similarity=0.306  Sum_probs=49.4

Q ss_pred             ccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhcc
Q 013310          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTV  285 (445)
Q Consensus       225 ~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~  285 (445)
                      +.+++++|.+  ++..+++++++. ++++.|.+++...+||++++ ++++|+++..|+++.
T Consensus        52 ~~~v~~~~~~--~~~~i~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~dll~~  108 (109)
T cd04606          52 DTPVSDIMDT--DVISVSADDDQE-EVARLFEKYDLLALPVVDEE-GRLVGIITVDDVIDV  108 (109)
T ss_pred             cchHHHHhCC--CCeEEcCCCCHH-HHHHHHHHcCCceeeeECCC-CcEEEEEEhHHhhhh
Confidence            4578899965  577899999998 99999999999999999865 789999999998864

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=97.04  E-value=0.0014  Score=53.79  Aligned_cols=57  Identities=23%  Similarity=0.383  Sum_probs=49.2

Q ss_pred             ccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (445)
Q Consensus       225 ~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~  284 (445)
                      ..++.++|.+  ++.++++++++. ++++.|.+.+.+.+||++++.++++|+++.+|++.
T Consensus        57 ~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~  113 (114)
T cd04613          57 LVVASDIMTK--PPVVVYPEDSLE-DALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS  113 (114)
T ss_pred             cEEHHHhccC--CCcEEcCCCCHH-HHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence            4678999976  577899999998 99999999999999999862378999999999874

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=97.02  E-value=0.0018  Score=56.13  Aligned_cols=30  Identities=20%  Similarity=0.221  Sum_probs=27.7

Q ss_pred             CCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          300 RIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       300 ~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      ++.++++++++.++++.|.+++.+.+||+|
T Consensus         2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD   31 (133)
T cd04592           2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVD   31 (133)
T ss_pred             CceEECCCCCHHHHHHHHHHcCCCEEEEEC
Confidence            467899999999999999999999999999

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.02  E-value=0.001  Score=56.83  Aligned_cols=55  Identities=18%  Similarity=0.408  Sum_probs=48.5

Q ss_pred             ccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (445)
Q Consensus       225 ~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~  284 (445)
                      ..++.++|.+  ++..++.++++. ++++.|.+++.+++||+++  ++++|+++.+|+++
T Consensus        77 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~~~--~~~iGvit~~dl~~  131 (132)
T cd04636          77 GKKVEEIMTK--KVITVDEDTTIE-DVARIMSKKNIKRLPVVDD--GKLVGIISRGDIIR  131 (132)
T ss_pred             CCCHHHhccC--CceEECCCCcHH-HHHHHHHHCCCCeeEEEEC--CEEEEEEEHHHhhc
Confidence            4478999974  578899999998 9999999999999999986  78999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=97.02  E-value=0.00096  Score=55.36  Aligned_cols=57  Identities=19%  Similarity=0.286  Sum_probs=46.0

Q ss_pred             cccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (445)
Q Consensus       226 ~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~  284 (445)
                      .+++++|.+....+..++++++. ++++.|.+++...+||++++ ++++|+++.+|+++
T Consensus        57 ~~v~~~~~~~~~~~~~~~~~~l~-~~l~~~~~~~~~~~pVv~~~-~~~~Gvit~~di~~  113 (114)
T cd04602          57 TPLSEVMTPREVLVVAPTGITLE-EANEILRESKKGKLPIVNDD-GELVALVTRSDLKK  113 (114)
T ss_pred             CCHHHhcCCCceEEECCCCCCHH-HHHHHHHhcCCCceeEECCC-CeEEEEEEHHHhhc
Confidence            45889997643333334499998 99999999999999999865 68999999999864

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=97.01  E-value=0.00097  Score=54.87  Aligned_cols=55  Identities=24%  Similarity=0.361  Sum_probs=48.1

Q ss_pred             cccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (445)
Q Consensus       226 ~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~  284 (445)
                      .++.++|.+  ...++++++++. ++++.+.+++..++||++++ ++++|+++.+|++.
T Consensus        58 ~~v~~i~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~l~Vv~~~-~~~~Gvvs~~dl~~  112 (113)
T cd04587          58 TLVERVMTP--NPVCATSDTPVL-EALHLMVQGKFRHLPVVDKS-GQVVGLLDVTKLTH  112 (113)
T ss_pred             CCHHHhcCC--CCeEEcCCCCHH-HHHHHHHHcCCCcccEECCC-CCEEEEEEHHHhcc
Confidence            578899964  467899999998 99999999999999999875 78999999999874

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=97.00  E-value=0.0012  Score=54.21  Aligned_cols=56  Identities=23%  Similarity=0.261  Sum_probs=48.7

Q ss_pred             cccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (445)
Q Consensus       224 ~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~  284 (445)
                      .+.+++++|.+  ++..+++++++. ++++.|.+++...+||+++  ++++|+++.+|+++
T Consensus        55 ~~~~i~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~dl~~  110 (111)
T cd04589          55 SSTPVGEIATF--PLITVDPDDFLF-NALLLMTRHRIHRVVVREG--GEVVGVLEQTDLLS  110 (111)
T ss_pred             CCCCHHHHhCC--CcEEECCCCcHH-HHHHHHHHhCccEEEEeeC--CEEEEEEEhHHhhc
Confidence            34578899964  578899999998 9999999999999999975  68999999999875

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>COG0517 FOG: CBS domain [General function prediction only]

Probab=96.99  E-value=0.0022  Score=53.05  Aligned_cols=54  Identities=22%  Similarity=0.485  Sum_probs=47.1

Q ss_pred             ccccccccCCceEEeeCCCCccHHHHHHHHH-cCCcEEEeEeCCCCCEEEEEEhhhhh
Q 013310          227 TAEEAMTPIESTFSLDVNSKLDWEAMGKILA-RGHSRVPVYSGNPKNIIGLLLVKSLL  283 (445)
Q Consensus       227 ~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~-~~~s~~PV~~~~~~~ivGiv~~kDll  283 (445)
                      +++++|++  .++++.++.++. ++.+.|.+ ++++++||++++.++++|+++.+|++
T Consensus        63 ~v~~v~~~--~~~~~~~~~~~~-~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~  117 (117)
T COG0517          63 PVKEVMTK--PVVTVDPDTPLE-EALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL  117 (117)
T ss_pred             cHHHhccC--CcEEECCCCCHH-HHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence            78999985  578899999998 99999999 79999999997522899999999973

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=96.99  E-value=0.0015  Score=53.28  Aligned_cols=54  Identities=15%  Similarity=0.222  Sum_probs=46.7

Q ss_pred             cccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (445)
Q Consensus       226 ~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~  284 (445)
                      .++.++|.+  +..+++++.++. ++++.|.+++...+||+++  ++++|+++.+|++.
T Consensus        50 ~~~~~~~~~--~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vv~~--~~~iGvit~~dl~~  103 (104)
T cd04594          50 GDVVDYIVR--GIPYVRLTSTAE-EAWEVMMKNKTRWCPVVDD--GKFKGIVTLDSILD  103 (104)
T ss_pred             cchhhhhhc--CCcEEcCCCCHH-HHHHHHHHcCcceEEEEEC--CEEEEEEEHHHhhc
Confidence            357788875  467899999998 9999999999999999973  78999999999864

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=96.98  E-value=0.0013  Score=53.67  Aligned_cols=56  Identities=27%  Similarity=0.452  Sum_probs=46.2

Q ss_pred             ccccccccccCCceEEeeC-CCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310          225 EKTAEEAMTPIESTFSLDV-NSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (445)
Q Consensus       225 ~~~V~diMtpr~~vv~v~~-~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~  284 (445)
                      +.++.++|.+  ++..+.. ++++. ++++.|.+++++.+||++++ ++++|+++.+|+++
T Consensus        53 ~~~v~~~~~~--~~~~~~~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvi~~~dil~  109 (110)
T cd04601          53 DKPVSEVMTP--ENLLTTVEGTSLE-EALELLHEHKIEKLPVVDDE-GKLKGLITVKDIEK  109 (110)
T ss_pred             CCCHHHhccc--CceEEecCCCCHH-HHHHHHHHhCCCeeeEEcCC-CCEEEEEEhhhhhc
Confidence            4578899964  3444556 99998 99999999999999999864 78999999999874

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.98  E-value=0.0013  Score=54.03  Aligned_cols=55  Identities=24%  Similarity=0.448  Sum_probs=47.9

Q ss_pred             ccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (445)
Q Consensus       225 ~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~  284 (445)
                      +.++.++|.+  ++.++++++++. ++++.|.+++..++||+++  ++++|+++..|++.
T Consensus        56 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~di~~  110 (111)
T cd04626          56 EKKVFNIVSQ--DVFYVNEEDTID-EALDIMREKQIGRLPVVDD--NKLIGVVRTKDILD  110 (111)
T ss_pred             cCcHHHHhcC--CcEEEcCCCcHH-HHHHHHHHcCCCeeeEeEC--CEEEEEEEhHHhcc
Confidence            3568888964  677899999998 9999999999999999986  78999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.98  E-value=0.0019  Score=54.03  Aligned_cols=46  Identities=20%  Similarity=0.257  Sum_probs=38.1

Q ss_pred             CCceeCCCCCHHHHHHHHhhCCCeEEEEEccCCCccCCCCCCCCCccc
Q 013310          300 RIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPK  347 (445)
Q Consensus       300 ~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Giv~~T~~di~~  347 (445)
                      ++.++++++++.++++.|.+++.+.+||+|+.|++.|++  |.+|++.
T Consensus         2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv--~~~dl~~   47 (120)
T cd04641           2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVY--SRFDVIN   47 (120)
T ss_pred             CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEE--eHHHHHH
Confidence            567899999999999999999999999999666666666  6666653

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=96.98  E-value=0.00083  Score=57.62  Aligned_cols=57  Identities=19%  Similarity=0.310  Sum_probs=50.0

Q ss_pred             CcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (445)
Q Consensus       223 l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~  284 (445)
                      ....+++++|.+  ++.++++++++. ++++.|.+++.+++||++ + ++++|+++.+|+++
T Consensus        78 ~~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~l~Vvd-~-g~~~Gvit~~di~~  134 (135)
T cd04586          78 SHGRKVADVMTR--PVVTVGEDTPLA-EVAELMEEHRIKRVPVVR-G-GRLVGIVSRADLLR  134 (135)
T ss_pred             hcCCCHHHHhCC--CceEeCCCCcHH-HHHHHHHHcCCCccCEec-C-CEEEEEEEhHhhhc
Confidence            355689999965  578899999998 999999999999999998 4 79999999999875

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.98  E-value=0.0012  Score=55.20  Aligned_cols=57  Identities=19%  Similarity=0.403  Sum_probs=49.4

Q ss_pred             cccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (445)
Q Consensus       224 ~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~  284 (445)
                      ...++.++|.+  ++..++.++++. ++++.|.+++.+.+||++++ ++++|+++.+|+++
T Consensus        65 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~~-g~~~Gvit~~dl~~  121 (122)
T cd04635          65 ASPTVEKIMST--PVYSVTPDDSIA-TAVELMLEHDIGRLPVVNEK-DQLVGIVDRHDVLK  121 (122)
T ss_pred             ccCcHHHHhcC--CCeeECCCCCHH-HHHHHHHHcCCCeeeEEcCC-CcEEEEEEhHHhhc
Confidence            45678889864  577899999998 99999999999999999865 78999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=96.98  E-value=0.003  Score=64.58  Aligned_cols=115  Identities=18%  Similarity=0.186  Sum_probs=87.2

Q ss_pred             ccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCC----------CCccccc---ccc
Q 013310          233 TPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET----------ETPVSAV---SIR  299 (445)
Q Consensus       233 tpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~----------~~~v~~i---m~~  299 (445)
                      ++....+++.+..++- ++...+.+++++|+||.|.+.+++..+++.+-+++.....          ..++.+.   +..
T Consensus       159 ~~~~~~~~i~p~~s~l-~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l~~~~~~~~~~~~l~~s~~dl~ig~~~  237 (381)
T KOG1764|consen  159 TLKPPFVSISPESSLL-DAVLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFLWLNGRLLPLPSLLSKSLSDLGIGTWS  237 (381)
T ss_pred             ccCCCceeecCcHHHH-HHHHHHHhCCccceeeecccccceeeehhHHHHHHHHHHhhcccccHHHhhCCHHHhCcchhh
Confidence            3333447888888887 8888999999999999995567999999999998754221          1122221   123


Q ss_pred             CCceeCCCCCHHHHHHHHhhCCCeEEEEEccCCCccCCCCCCCCCcccccc
Q 013310          300 RIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNE  350 (445)
Q Consensus       300 ~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Giv~~T~~di~~~i~  350 (445)
                      .+..+.+++++.+|+++|...+..-+||||+.|+.+|.+  +..|+.....
T Consensus       238 ~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~--s~~Dv~~l~~  286 (381)
T KOG1764|consen  238 NIASISEDTPVIEALKIMSERRISALPVVDENGKKVGNY--SRFDVIHLAR  286 (381)
T ss_pred             hheeecCCCcHHHHHHHHHhcCcCcceEEcCCCceecce--ehhhhhhhhh
Confidence            577899999999999999999999999999888888877  6556554443

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.97  E-value=0.0009  Score=55.89  Aligned_cols=57  Identities=12%  Similarity=0.353  Sum_probs=49.7

Q ss_pred             CcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (445)
Q Consensus       223 l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~  284 (445)
                      +.+.++.++|.+  +..+++.++++. ++++.+.+.+.+.+||+++  ++++|+++.+|+++
T Consensus        64 ~~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Gvi~~~dl~~  120 (121)
T cd04633          64 IRNLPVSDIMTR--PVITIEPDTSVS-DVASLMLENNIGGLPVVDD--GKLVGIVTRTDILR  120 (121)
T ss_pred             hhccCHHHHccC--CceEECCCCcHH-HHHHHHHHcCCCcccEEEC--CEEEEEEEHHHhhc
Confidence            345678899964  577899999998 9999999999999999986  78999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=96.96  E-value=0.0016  Score=53.47  Aligned_cols=56  Identities=18%  Similarity=0.361  Sum_probs=48.6

Q ss_pred             cccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (445)
Q Consensus       224 ~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~  284 (445)
                      .+.+++++|.+  .+.+++.++++. ++++.|.+++.+.+||++ + ++++|+++.+|+++
T Consensus        54 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~~-~-~~~~Gvvt~~di~~  109 (110)
T cd04595          54 GHAPVKDYMST--DVVTVPPDTPLS-EVQELMVEHDIGRVPVVE-D-GRLVGIVTRTDLLR  109 (110)
T ss_pred             ccCcHHHHhcC--CCEEECCCCcHH-HHHHHHHHcCCCeeEEEe-C-CEEEEEEEhHHhhc
Confidence            45678899975  577899999998 999999999999999998 3 78999999999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=96.96  E-value=0.0015  Score=53.33  Aligned_cols=55  Identities=29%  Similarity=0.563  Sum_probs=47.7

Q ss_pred             cccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (445)
Q Consensus       226 ~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~  284 (445)
                      .++.++|.+  ++.++++++++. ++++.+.+++.+++||++++ ++++|+++.+|+++
T Consensus        54 ~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~vv~~~-g~~~Gvit~~~l~~  108 (109)
T cd04583          54 KSLEDIMLE--DVFTVQPDASLR-DVLGLVLKRGPKYVPVVDED-GKLVGLITRSSLVD  108 (109)
T ss_pred             CcHhHhhcC--CceEECCCCcHH-HHHHHHHHcCCceeeEECCC-CeEEEEEehHHhhc
Confidence            457888875  577899999998 99999999999999999865 78999999999874

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=96.96  E-value=0.0018  Score=53.05  Aligned_cols=55  Identities=20%  Similarity=0.384  Sum_probs=47.7

Q ss_pred             cccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (445)
Q Consensus       226 ~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~  284 (445)
                      .++.++|.+  ++.+++.++++. ++++.|.+++.+.+||++++ ++++|+++.+|+++
T Consensus        56 ~~~~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~it~~di~~  110 (111)
T cd04612          56 VLVGDVMTR--DPVTASPDETLR-DALKRMAERDIGRLPVVDDS-GRLVGIVSRSDLLR  110 (111)
T ss_pred             cCHHHhccC--CCeEECCCCCHH-HHHHHHHhCCCCeeeEEcCC-CCEEEEEEHHHhhh
Confidence            457788875  578899999998 99999999999999999864 78999999999865

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.96  E-value=0.0015  Score=54.61  Aligned_cols=57  Identities=16%  Similarity=0.327  Sum_probs=49.4

Q ss_pred             cccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (445)
Q Consensus       224 ~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~  284 (445)
                      .+.++.++|..  ++.++++++++. ++++.|.+.+.+.+||++++ ++++|+++.+|++.
T Consensus        65 ~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~dl~~  121 (122)
T cd04803          65 RDVPVAEVMKT--DVLTVTPDTPLR-EAAEIMVENKIGCLPVVDDK-GTLVGIITRSDFLR  121 (122)
T ss_pred             cCcCHHHhhCC--CCeEeCCCCcHH-HHHHHHHHcCCCeEEEEcCC-CCEEEEEEHHHhhc
Confidence            45678889953  577899999998 99999999999999999875 68999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=96.95  E-value=0.0016  Score=53.26  Aligned_cols=57  Identities=19%  Similarity=0.321  Sum_probs=48.9

Q ss_pred             cccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (445)
Q Consensus       224 ~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~  284 (445)
                      .+.+++++|.+  ++.++++++++. ++++.|.+.+...+||++++ ++++|+++.+|+++
T Consensus        54 ~~~~v~~~~~~--~~~~~~~~~~l~-~~l~~~~~~~~~~~~Vv~~~-~~~~Gvi~~~di~~  110 (111)
T cd04611          54 LQTPVGEVMSS--PLLTVPADTSLY-DARQLMREHGIRHLVVVDDD-GELLGLLSQTDLLQ  110 (111)
T ss_pred             CCcCHHHhcCC--CceEECCCCCHH-HHHHHHHHcCCeEEEEECCC-CcEEEEEEhHHhhc
Confidence            34678889864  577899999998 99999999999999999875 78999999999874

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=96.92  E-value=0.0014  Score=54.60  Aligned_cols=57  Identities=19%  Similarity=0.280  Sum_probs=49.9

Q ss_pred             CcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (445)
Q Consensus       223 l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~  284 (445)
                      ..+.+++++|.+  .+.+++.++++. ++++.+.+++++.+||+++  ++++|+++.+|+++
T Consensus        64 ~~~~~v~~~~~~--~~~~i~~~~~l~-~~~~~~~~~~~~~~~V~~~--~~~~Gvv~~~di~~  120 (121)
T cd04584          64 LLKMPVKEIMTK--DVITVHPLDTVE-EAALLMREHRIGCLPVVED--GRLVGIITETDLLR  120 (121)
T ss_pred             hcCcCHHHHhhC--CCeEECCCCcHH-HHHHHHHHcCCCeEEEeeC--CEEEEEEEHHHhhc
Confidence            456678999975  577899999998 9999999999999999975  78999999999875

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.90  E-value=0.0012  Score=54.35  Aligned_cols=55  Identities=16%  Similarity=0.303  Sum_probs=48.2

Q ss_pred             ccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (445)
Q Consensus       225 ~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~  284 (445)
                      +.++.++|.+  ++.++++++++. ++++.|.+++.+.+||+++  +.++|+++.+|+++
T Consensus        59 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Gvit~~di~~  113 (114)
T cd04629          59 VATVRDIMTT--EVLTVSPDDSIV-DLAQLMLKAKPKRYPVVDD--GKLVGQISRRDVLR  113 (114)
T ss_pred             CccHHHHhcc--CceEECCCCcHH-HHHHHHHHhCCCccCEEEC--CEEEEEEEHHHHhc
Confidence            4578899975  577899999998 9999999999999999986  78999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.88  E-value=0.0016  Score=53.42  Aligned_cols=55  Identities=18%  Similarity=0.327  Sum_probs=47.9

Q ss_pred             cccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (445)
Q Consensus       226 ~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~  284 (445)
                      .++.++|..  ++.+++.+.++. ++++.|.+++..++||++++ ++++|+++.+|+..
T Consensus        56 ~~v~~~~~~--~~~~i~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~dl~~  110 (111)
T cd04639          56 APVRGVMRR--DFPTVSPSATLD-AVLRLMQQGGAPAVPVVDGS-GRLVGLVTLENVGE  110 (111)
T ss_pred             CcHHHHhcC--CCcEECCCCcHH-HHHHHHHhcCCceeeEEcCC-CCEEEEEEHHHhhc
Confidence            468888964  677899999998 99999999999999999865 78999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=96.87  E-value=0.0018  Score=52.52  Aligned_cols=55  Identities=18%  Similarity=0.337  Sum_probs=48.1

Q ss_pred             ccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (445)
Q Consensus       225 ~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~  284 (445)
                      +.++.++|.+  +..+++.++++. ++++.|.+++...+||+++  ++++|+++.+|++.
T Consensus        50 ~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~~l~~  104 (105)
T cd04599          50 NRLVADAMTR--EVVTISPEASLL-EAKRLMEEKKIERLPVLRE--RKLVGIITKGTIAL  104 (105)
T ss_pred             cCCHHHHccC--CCEEECCCCCHH-HHHHHHHHcCCCEeeEEEC--CEEEEEEEHHHhcc
Confidence            3468889965  577899999998 9999999999999999986  78999999999863

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.87  E-value=0.0018  Score=53.27  Aligned_cols=56  Identities=23%  Similarity=0.464  Sum_probs=48.1

Q ss_pred             cccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (445)
Q Consensus       224 ~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~  284 (445)
                      .+.+++++|.+  ++.++++++++. ++++.+.+++...+||++++  +++|+++.+|+++
T Consensus        56 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~--~~~Gvi~~~di~~  111 (112)
T cd04802          56 REVPVGEVMST--PLITIDPNASLN-EAAKLMAKHGIKRLPVVDDD--ELVGIVTTTDIVM  111 (112)
T ss_pred             ccCCHHHhcCC--CcEEECCCCCHH-HHHHHHHHcCCCeeEEeeCC--EEEEEEEhhhhhc
Confidence            34578899965  577889999998 99999999999999999863  8999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=96.86  E-value=0.0019  Score=43.82  Aligned_cols=46  Identities=17%  Similarity=0.457  Sum_probs=39.9

Q ss_pred             eEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhcc
Q 013310          238 TFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTV  285 (445)
Q Consensus       238 vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~  285 (445)
                      +.++++++++. ++++.|.+++++.+||++++ ++++|+++.+++.+.
T Consensus         2 ~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~g~i~~~~l~~~   47 (49)
T smart00116        2 VVTVSPDTTLE-EALELLREHGIRRLPVVDEE-GRLVGIVTRRDIIKA   47 (49)
T ss_pred             ceEecCCCcHH-HHHHHHHHhCCCcccEECCC-CeEEEEEEHHHHHHh
Confidence            45678899998 99999999999999999875 789999999998754

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=96.79  E-value=0.002  Score=52.81  Aligned_cols=55  Identities=24%  Similarity=0.433  Sum_probs=48.2

Q ss_pred             ccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (445)
Q Consensus       225 ~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~  284 (445)
                      +.++.++|..  ++.++++++++. ++++.|.+++.+++||+++  ++++|+++.+|+++
T Consensus        56 ~~~i~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Giit~~di~~  110 (111)
T cd04800          56 DTPVSEVMTA--PPITIPPDATVF-EALLLMLERGIHHLPVVDD--GRLVGVISATDLLR  110 (111)
T ss_pred             cCCHHHHhCC--CCeEECCCCcHH-HHHHHHHHcCCCeeeEeEC--CEEEEEEEHHHhhc
Confidence            3568888864  578899999998 9999999999999999986  78999999999874

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.78  E-value=0.0036  Score=51.38  Aligned_cols=55  Identities=16%  Similarity=0.265  Sum_probs=47.6

Q ss_pred             cccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (445)
Q Consensus       226 ~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~  284 (445)
                      .+++++|.+  ++.+++.++++. ++++.+.+++...+||++++ ++++|+++.+|+++
T Consensus        57 ~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-g~~~Gilt~~dl~~  111 (112)
T cd04624          57 TPVSEIMTR--DLVTVDPDEPVA-EAAKLMRKNNIRHHLVVDKG-GELVGVISIRDLVR  111 (112)
T ss_pred             cCHHHhccC--CCEEECCCCcHH-HHHHHHHHcCccEEEEEcCC-CcEEEEEEHHHhcc
Confidence            467888864  577899999998 99999999999999999875 78999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.77  E-value=0.002  Score=54.51  Aligned_cols=58  Identities=21%  Similarity=0.377  Sum_probs=49.0

Q ss_pred             cccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeC-CCCCEEEEEEhhhhhc
Q 013310          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSG-NPKNIIGLLLVKSLLT  284 (445)
Q Consensus       224 ~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~-~~~~ivGiv~~kDll~  284 (445)
                      .+.+++++|++  ++++++++.++. ++++.|.+++...+||+++ +.++++|+|+.+|+++
T Consensus        69 ~~~~~~~~~~~--~~~~v~~~~~l~-~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~  127 (128)
T cd04632          69 LDLPVYDAMSS--PVITASPNDSVR-DAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR  127 (128)
T ss_pred             ccCcHHHHhcC--CCceECCCCcHH-HHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence            45678899974  578899999998 9999999999999999853 3478999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=96.76  E-value=0.0047  Score=52.41  Aligned_cols=40  Identities=13%  Similarity=0.109  Sum_probs=32.1

Q ss_pred             cCCceeCCCCCHHHHHHHHhhCCCeEEEEEccCCCccCCC
Q 013310          299 RRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLP  338 (445)
Q Consensus       299 ~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Giv  338 (445)
                      +++.+++++.++.++++.|++++...+||+|+.|+..|++
T Consensus         2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii   41 (124)
T cd04608           2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMV   41 (124)
T ss_pred             CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEE
Confidence            5678899999999999999999999999999433333333

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.75  E-value=0.0021  Score=53.78  Aligned_cols=55  Identities=29%  Similarity=0.448  Sum_probs=48.0

Q ss_pred             cccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (445)
Q Consensus       226 ~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~  284 (445)
                      .+++++|.+  ++++++.++++. ++++.|.+++.+++||++++ ++++|+++.+|+++
T Consensus        67 ~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~vv~~~-~~~~Gvit~~dll~  121 (122)
T cd04637          67 RRAHQIMTR--DPITVSPDTPVD-EASKLLLENSISCLPVVDEN-GQLIGIITWKDLLK  121 (122)
T ss_pred             hHHHHhhcC--CCeeeCCCCcHH-HHHHHHHHcCCCeEeEECCC-CCEEEEEEHHHhhh
Confidence            357888864  578899999998 99999999999999999865 78999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=96.73  E-value=0.0026  Score=52.21  Aligned_cols=53  Identities=11%  Similarity=0.203  Sum_probs=45.2

Q ss_pred             ccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310          227 TAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (445)
Q Consensus       227 ~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~  284 (445)
                      .+.++|.   ++.+++.++++. ++++.|.+++.+.+||++++ ++++|+++.+|+++
T Consensus        58 ~~~~~~~---~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~di~~  110 (111)
T cd04590          58 DLRDLLR---PPLFVPESTPLD-DLLEEMRKERSHMAIVVDEY-GGTAGLVTLEDILE  110 (111)
T ss_pred             CHHHHhc---CCeecCCCCcHH-HHHHHHHhcCCcEEEEEECC-CCEEEEeEHHHhhc
Confidence            4666664   367889999998 99999999999999999875 78999999999874

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.68  E-value=0.0047  Score=50.95  Aligned_cols=48  Identities=15%  Similarity=-0.018  Sum_probs=39.3

Q ss_pred             CCceeCCCCCHHHHHHHHhhCCCeEEEEEccCCCccCCCCCCCCCccccc
Q 013310          300 RIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLN  349 (445)
Q Consensus       300 ~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Giv~~T~~di~~~i  349 (445)
                      +++++++++++.++++.|.+++.+.+||+|+.|+..|++  +.+|+.+..
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv--~~~dl~~~~   49 (116)
T cd04643           2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTI--SLTDILWKL   49 (116)
T ss_pred             CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEE--eHHHHHHHh
Confidence            467899999999999999999999999999767777777  666665433

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=96.65  E-value=0.005  Score=50.37  Aligned_cols=54  Identities=20%  Similarity=0.362  Sum_probs=46.4

Q ss_pred             ccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310          227 TAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (445)
Q Consensus       227 ~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~  284 (445)
                      +++++|.+  ++.+++.++++. ++++.|.+++...+||++++ ++++|+++.+|+.+
T Consensus        56 ~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~v~~~di~~  109 (110)
T cd04605          56 SVEDIMTR--NVITATPDEPID-VAARKMERHNISALPVVDAE-NRVIGIITSEDISK  109 (110)
T ss_pred             CHHHhcCC--CCeEECCCCcHH-HHHHHHHHhCCCEEeEECCC-CcEEEEEEHHHhhh
Confidence            47788854  577899999998 99999999999999999865 78999999999864

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.61  E-value=0.0043  Score=52.46  Aligned_cols=51  Identities=20%  Similarity=0.293  Sum_probs=44.1

Q ss_pred             cccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310          230 EAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (445)
Q Consensus       230 diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~  284 (445)
                      +.|.  .++.++++++++. ++++.|.+++.+++||++++ ++++|+++..|+++
T Consensus        75 ~~~~--~~~~~v~~~~~l~-~a~~~~~~~~~~~l~Vvd~~-~~~~Giit~~dil~  125 (126)
T cd04642          75 GVKS--RPLITCTPSSTLK-EVITKLVANKVHRVWVVDEE-GKPIGVITLTDIIS  125 (126)
T ss_pred             cccc--CCCeEECCCCcHH-HHHHHHHHhCCcEEEEECCC-CCEEEEEEHHHHhc
Confidence            4554  3577899999998 99999999999999999875 78999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=96.57  E-value=0.0042  Score=50.84  Aligned_cols=55  Identities=16%  Similarity=0.301  Sum_probs=47.4

Q ss_pred             cccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (445)
Q Consensus       226 ~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~  284 (445)
                      .++.++|.+  .+.+++++.++. ++++.|.+.+...+||++++ ++++|+++.+|+++
T Consensus        55 ~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~i~~~dl~~  109 (110)
T cd04588          55 AKVKDVMTK--DVITIDEDEQLY-DAIRLMNKHNVGRLIVTDDE-GRPVGIITRTDILR  109 (110)
T ss_pred             cCHHHHhcC--CceEECCCCCHH-HHHHHHHhcCCCEEEEECCC-CCEEEEEEhHHhhc
Confidence            467888864  577899999998 99999999999999999865 78999999999874

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=96.57  E-value=0.0068  Score=62.05  Aligned_cols=99  Identities=15%  Similarity=0.121  Sum_probs=63.0

Q ss_pred             HHHHHhhcCcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCC-CCCcc
Q 013310          215 TIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE-TETPV  293 (445)
Q Consensus       215 ~~l~~~~~l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~-~~~~v  293 (445)
                      ..+..+-..+-.+++++|.|....  ...+.+   .++   .+++.+.+.|+++      |+++..+....... .+..+
T Consensus       263 ~~~~~~~~~~~l~a~~~m~~~~~~--~~~~~~---~~~---~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~  328 (382)
T TIGR03415       263 DFVAHTNPLNVLTARSLMRPLTDL--EHVDGG---WCV---SDRRDTWLFTIDK------QVRRRDAKLPVQAWAAEQEV  328 (382)
T ss_pred             HHhcccCcccceeHHHHhcccccc--cccCcc---hhh---hhcccceeEeecc------ceecccchHhHhhcccccch
Confidence            334444444557899999763322  222222   222   3378888888864      88887776543221 22346


Q ss_pred             ccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          294 SAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       294 ~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      .+ +.....++++++++.+++..+.+.... ++|+|
T Consensus       329 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~  362 (382)
T TIGR03415       329 ES-LEAAPTVINPDTLMRDVLAARHRTGGA-ILLVE  362 (382)
T ss_pred             hh-hcccCcccCCCCcHHHHHHHHhcCCCC-eEEee
Confidence            56 467788999999999999998887766 45666

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=96.53  E-value=0.0073  Score=59.25  Aligned_cols=103  Identities=17%  Similarity=0.209  Sum_probs=72.4

Q ss_pred             HHHHHHHhhcCcccccccccccCCceEEeeCCC-CccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCCCC
Q 013310          213 ETTIISGALDLTEKTAEEAMTPIESTFSLDVNS-KLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETET  291 (445)
Q Consensus       213 E~~~l~~~~~l~~~~V~diMtpr~~vv~v~~~~-sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~~  291 (445)
                      -++.++++-...-.++++||.+ .+......+. .-. .+...+.+.+.+.+-+++. .++.+|+++..+....      
T Consensus       261 V~~Fv~~v~~~~VltA~~IM~~-~~~~~~~~~~~~~~-~al~~~~~~~~~~~~~~~~-~~~~~g~v~~~~~~~~------  331 (386)
T COG4175         261 VRDFVRNVDRSRVLTAKDIMRR-PDLLIRKTPGDGPR-VALKLLRDEGREYGYAVDR-GNKFVGVVSIDSLVKA------  331 (386)
T ss_pred             HHHHHhcCChhheeeHHHhhcc-cccccccccccccc-hhhhhhhhccchhhHHHhc-cCceeeEEeccchhcc------
Confidence            4566677766777899999985 2222222222 223 5667777777666666663 4679999998886543      


Q ss_pred             ccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          292 PVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       292 ~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                          .+..++..++.++++.+.+....+...+++ |+|
T Consensus       332 ----~~~~~~~~v~~d~~~~~~~~~~~~~~~p~a-Vvd  364 (386)
T COG4175         332 ----ALIDDVLTVDADTPLSEILARIRQAPCPVA-VVD  364 (386)
T ss_pred             ----cccccccccCccchHHHHHHHHhcCCCcee-EEc
Confidence                346677889999999999999998887776 667

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=96.49  E-value=0.005  Score=50.57  Aligned_cols=49  Identities=20%  Similarity=0.364  Sum_probs=43.1

Q ss_pred             ccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310          231 AMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (445)
Q Consensus       231 iMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~  284 (445)
                      +|.+  ++.+++.++++. ++++.|.+++...+||+++  ++++|+++.+|+.+
T Consensus        56 ~m~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~pVv~~--~~~~Gvvt~~dl~~  104 (105)
T cd04591          56 YIDP--SPFTVSPRTSLE-KVHQLFRKLGLRHLLVVDE--GRLVGIITRKDLLK  104 (105)
T ss_pred             hccC--CCceECCCCcHH-HHHHHHHHcCCCEEEEEEC--CeEEEEEEhhhhhc
Confidence            7864  577899999998 9999999999999999963  78999999999875

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=96.49  E-value=0.0037  Score=67.57  Aligned_cols=59  Identities=24%  Similarity=0.312  Sum_probs=51.2

Q ss_pred             ccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCC-CCEEEEEEhhhhhccC
Q 013310          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNP-KNIIGLLLVKSLLTVR  286 (445)
Q Consensus       225 ~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~-~~ivGiv~~kDll~~~  286 (445)
                      +.+++|+|++  ++.++++++++. ++++.|.+++.+++||+|++. ++++|+|+.+|+++..
T Consensus       511 ~~~v~dim~~--~~~~v~~d~~L~-~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l  570 (574)
T PRK01862        511 DKTAADYAHT--PFPLLTPDMPLG-DALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAY  570 (574)
T ss_pred             cchHHHhccC--CCeeECCCCCHH-HHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHH
Confidence            4679999975  577899999998 999999999999999998653 4799999999998754

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=96.47  E-value=0.0053  Score=64.33  Aligned_cols=55  Identities=15%  Similarity=0.033  Sum_probs=46.6

Q ss_pred             CccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEccCCCccCCCCCCCCCccc
Q 013310          291 TPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPK  347 (445)
Q Consensus       291 ~~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Giv~~T~~di~~  347 (445)
                      .+++++|.+++.++++++++.++++.|.+++.+.+||+|+.|++.|+|  |.+|+++
T Consensus       335 ~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Giv--t~~dl~~  389 (454)
T TIGR01137       335 ATVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSV--TLRELLS  389 (454)
T ss_pred             CCHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEE--EHHHHHH
Confidence            678899989999999999999999999999989999999666666666  6666554

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.26  E-value=0.0064  Score=52.86  Aligned_cols=56  Identities=13%  Similarity=0.344  Sum_probs=48.8

Q ss_pred             cccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (445)
Q Consensus       224 ~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~  284 (445)
                      ...++.++|.+  ++.+++.++++. ++++.|.+++++++||+++  ++++|+++.+|++.
T Consensus        87 ~~~~v~~~~~~--~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vv~~--~~~~Gvvt~~dl~~  142 (143)
T cd04634          87 GKMKVRDIMTK--KVITISPDASIE-DAAELMVRHKIKRLPVVED--GRLVGIVTRGDIIE  142 (143)
T ss_pred             hcCCHHHHcCC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHhhc
Confidence            45678899975  577899999998 9999999999999999986  78999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=96.22  E-value=0.005  Score=64.26  Aligned_cols=70  Identities=23%  Similarity=0.278  Sum_probs=58.4

Q ss_pred             HHHHHHHhhcC---cccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCC
Q 013310          213 ETTIISGALDL---TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP  287 (445)
Q Consensus       213 E~~~l~~~~~l---~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~  287 (445)
                      ++.+...++.=   ...+|+++||.  ++++++.++.+= ||+-.|.++++.++||+++  |+++|+|+..|+++...
T Consensus       198 ~~dl~~~v~~~g~~~~~~V~evmT~--p~~svd~~~~~f-eAml~m~r~~I~hl~V~e~--gq~~Gilt~~dIl~l~s  270 (610)
T COG2905         198 RKDLRSRVIADGRSKTQKVSEVMTS--PVISVDRGDFLF-EAMLMMLRNRIKHLPVTED--GQPLGILTLTDILRLFS  270 (610)
T ss_pred             hHHHHHHHHhcCCCcccchhhhhcc--CceeecCcchHH-HHHHHHHHhCCceeeeecC--CeeeEEeeHHHHHHhhC
Confidence            45556666542   34689999995  799999999997 9999999999999999986  79999999999987643

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=96.21  E-value=0.0064  Score=63.73  Aligned_cols=59  Identities=25%  Similarity=0.432  Sum_probs=52.8

Q ss_pred             ccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccC
Q 013310          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR  286 (445)
Q Consensus       225 ~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~  286 (445)
                      +.+++++|++ .++++++++.++. ++++.|.+++...+||+|++ ++++|+|+.+|+++..
T Consensus       142 ~~~V~dvm~~-~~~~~V~~~~sl~-eal~~m~~~~~~~lpVVDe~-G~lvGiVT~~DIl~~~  200 (450)
T TIGR01302       142 GKPVSEVMTR-EEVITVPEGIDLE-EALKVLHEHRIEKLPVVDKN-GELVGLITMKDIVKRR  200 (450)
T ss_pred             CCCHHHhhCC-CCCEEECCCCcHH-HHHHHHHHcCCCeEEEEcCC-CcEEEEEEhHHhhhcc
Confidence            5689999984 3688999999998 99999999999999999875 7899999999999764

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=96.20  E-value=0.0066  Score=50.37  Aligned_cols=57  Identities=21%  Similarity=0.311  Sum_probs=46.2

Q ss_pred             cccccccccccCCceEEeeCCCCccHHHHHHHHHcCCc---EEEeEeCCCCCEEEEEEhhhhhc
Q 013310          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHS---RVPVYSGNPKNIIGLLLVKSLLT  284 (445)
Q Consensus       224 ~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s---~~PV~~~~~~~ivGiv~~kDll~  284 (445)
                      .+.+++++|.+  ++.++++++++. ++++.|.+++..   ..||++++ ++++|+|+.+|+++
T Consensus        59 ~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~vv~~~-~~~~Gvvs~~di~~  118 (119)
T cd04598          59 GKKPVSEVMDP--DPLIVEADTPLE-EVSRLATGRDSQNLYDGFIVTEE-GRYLGIGTVKDLLR  118 (119)
T ss_pred             cCCcHHHhcCC--CcEEecCCCCHH-HHHHHHHcCCcccccccEEEeeC-CeEEEEEEHHHHhc
Confidence            45679999975  577899999998 999999888753   45677765 79999999999874

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.01  E-value=0.012  Score=47.87  Aligned_cols=53  Identities=19%  Similarity=0.327  Sum_probs=45.3

Q ss_pred             ccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310          227 TAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (445)
Q Consensus       227 ~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~  284 (445)
                      ++.++|.+  ++.+++.++++. ++++.|.+++...+||+++  ++++|+++.+|++.
T Consensus        53 ~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~--~~~~G~it~~d~~~  105 (106)
T cd04638          53 QLALLMTR--DPPTVSPDDDVK-EAAKLMVENNIRRVPVVDD--GKLVGIVTVADIVR  105 (106)
T ss_pred             hHHHHhcC--CCceECCCCCHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHhhc
Confidence            46777864  467789999998 9999999999999999985  58999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.00  E-value=0.022  Score=45.80  Aligned_cols=48  Identities=15%  Similarity=0.108  Sum_probs=37.1

Q ss_pred             CCceeCCCCCHHHHHHHHhhCCCeEEEEEccCCCccCCCCCCCCCccccc
Q 013310          300 RIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLN  349 (445)
Q Consensus       300 ~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Giv~~T~~di~~~i  349 (445)
                      ++.++++++++.++++.|.+++.+.+||+|+.|++.|++  +.+|++...
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v--~~~~l~~~~   49 (113)
T cd02205           2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIV--TERDLLRAL   49 (113)
T ss_pred             CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEE--eHHHHHHHH
Confidence            456789999999999999999899999999656666666  555554333

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=95.88  E-value=0.02  Score=46.43  Aligned_cols=47  Identities=11%  Similarity=0.085  Sum_probs=40.0

Q ss_pred             CCceeCCCCCHHHHHHHHhhCCCeEEEEEccCCCccCCCCCCCCCccccc
Q 013310          300 RIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLN  349 (445)
Q Consensus       300 ~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Giv~~T~~di~~~i  349 (445)
                      ++.++++++++.++++.|.+++.+.+||+|+ |+..|++  |.+|+.+..
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v--~~~dl~~~~   48 (110)
T cd04609           2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD-GRVVGSI--DESDLLDAL   48 (110)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCceeeEeeC-CeeEEEE--eHHHHHHHH
Confidence            4567899999999999999999999999997 8888888  777776544

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=94.91  E-value=0.025  Score=58.83  Aligned_cols=61  Identities=15%  Similarity=0.251  Sum_probs=53.7

Q ss_pred             cCcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccC
Q 013310          222 DLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR  286 (445)
Q Consensus       222 ~l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~  286 (445)
                      .-.+.+++++|.+  +++++++++..+ ++.+.+.+++....||+|++ ++++|+++..|++...
T Consensus       192 a~~~~~i~~im~~--~~~~V~~~~dqe-evA~~~~~ydl~a~PVVd~~-~~LiG~itiDDiidvi  252 (451)
T COG2239         192 AEPDELLKDLMED--DVVSVLADDDQE-EVARLFEKYDLLAVPVVDED-NRLIGIITIDDIIDVI  252 (451)
T ss_pred             CCcHhHHHHHhcc--cceeecccCCHH-HHHHHHHHhCCeecceECCC-CceeeeeeHHHHHHHH
Confidence            4467789999986  488999999988 99999999999999999976 7999999999997653

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=94.21  E-value=0.048  Score=54.02  Aligned_cols=59  Identities=17%  Similarity=0.348  Sum_probs=52.1

Q ss_pred             cccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccC
Q 013310          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR  286 (445)
Q Consensus       224 ~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~  286 (445)
                      ++.+...+|+.  +..++.+.+++. .+.+.|.-.++.-+||++++ .+++|+++.+|+++.+
T Consensus       247 ~~t~ieKVMtk--np~tv~~~tsVA-svaq~MiwE~iem~PVv~~n-~~llGiitR~dvlk~l  305 (432)
T COG4109         247 PSTTIEKVMTK--NPITVRAKTSVA-SVAQMMIWEGIEMLPVVDSN-NTLLGIITRQDVLKSL  305 (432)
T ss_pred             CCccHHHHhcc--CCeeecccchHH-HHHHHHHhccceeeeEEcCC-ceEEEEEEHHHHHHHH
Confidence            45678889985  578899999998 99999999999999999976 7899999999998764

>PF03471 CorC_HlyC: Transporter associated domain; InterPro: IPR005170 This small domain is found in a family of proteins with the CBS IPR002550 from INTERPRO domain and two CBS domains with this domain found at the C terminus of the proteins, the domain is also found at the C terminus of some Na+/H+ antiporters

Probab=93.27  E-value=0.021  Score=44.97  Aligned_cols=47  Identities=21%  Similarity=0.164  Sum_probs=39.5

Q ss_pred             ccCCCceEeeccCCCccccccccCCCCCC-CCCcccccc-ccCCCCC-Cc
Q 013310          367 DEKTESVVVDVDRPLSSGSMNRLSSSQRS-DSTTNGLIY-ASEDIED-GE  413 (445)
Q Consensus       367 ~~~~~~~~v~~~~~i~~~~~~~~~~~~~~-~~tl~g~~~-~~~~~e~-g~  413 (445)
                      +...+.|.++|++++.++++.+...+++. +.|++||++ .++++|. |.
T Consensus         2 ~~~~~~~~v~G~~~l~~l~~~~~~~l~~~~~~Tl~G~i~~~l~~iP~~Ge   51 (81)
T PF03471_consen    2 KLDDGTYIVSGSTPLDDLNELLGLDLPEEDYDTLGGLILEQLGRIPEVGE   51 (81)
T ss_dssp             EETTSEEEEETTSBHHHHHHHHTS-TTTTTTSBHHHHHHHHHTSS--TTS
T ss_pred             eEcCCEEEEEecCCHHHHHHHHCcCCCccchhhHHHHHHHHcCCCCCCCe
Confidence            34677899999999999999999998887 999999999 9999998 55

This domain is also found in CorC that is involved in Magnesium and cobalt efflux. The function of this domain is uncertain but might be involved in modulating transport of ion substrates.; PDB: 3DED_F 2PLI_C 2R2Z_A 2P4P_A 2O3G_A 2P3H_A 3LLB_A 3LAE_A 2P13_B 2NQW_A ....

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=92.17  E-value=0.19  Score=51.19  Aligned_cols=56  Identities=21%  Similarity=0.453  Sum_probs=48.4

Q ss_pred             cccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccC
Q 013310          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR  286 (445)
Q Consensus       226 ~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~  286 (445)
                      ..+.+.|.+  .+.++++++++. +++..+.++++. +||+|++ ++++|+|+..+++..+
T Consensus       302 ~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~-~~v~~~~-~~~~g~i~~~~~~~~~  357 (363)
T TIGR01186       302 QGLQDVLID--DIYTVDAGTLLR-ETVRKVLKAGIK-VPVVDED-QRLVGIVTRGSLVDAL  357 (363)
T ss_pred             Cchhhhhcc--CCceECCCCcHH-HHHHHHHhCCCC-EEEECCC-CcEEEEEEHHHHHHHH
Confidence            357888864  567899999998 999999999999 9999875 8999999999998764

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=91.85  E-value=0.15  Score=51.47  Aligned_cols=59  Identities=15%  Similarity=0.152  Sum_probs=51.2

Q ss_pred             CcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhcc
Q 013310          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTV  285 (445)
Q Consensus       223 l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~  285 (445)
                      =....+.++|+++.  ++.+.+.+++ ++-+.+.++.-.++||++++ ++++-++...||.+.
T Consensus       168 ~~~~~~~~vmt~~~--~~~~~gi~l~-~~neiL~~~kkGkl~iv~~~-gelva~~~rtDl~k~  226 (503)
T KOG2550|consen  168 DNSLLVSDVMTKNP--VTGAQGITLK-EANEILKKIKKGKLPVVDDK-GELVAMLSRTDLMKN  226 (503)
T ss_pred             cccchhhhhccccc--ccccccccHH-HHHHHHHhhhcCCcceeccC-Cceeeeeehhhhhhh
Confidence            34567899999864  7888999998 99999999999999999976 899999999999874

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=89.74  E-value=1.5  Score=42.25  Aligned_cols=82  Identities=17%  Similarity=0.163  Sum_probs=53.2

Q ss_pred             eEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCC-----------------CCccccccccC
Q 013310          238 TFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET-----------------ETPVSAVSIRR  300 (445)
Q Consensus       238 vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~-----------------~~~v~~im~~~  300 (445)
                      ++.|..|.  + ||++.-     +++.|.++  ++++-+=+..+++..+.++                 ...+.+.|.+.
T Consensus       189 ivfVTHDi--d-EA~kLa-----dri~vm~~--G~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~~  258 (309)
T COG1125         189 IVFVTHDI--D-EALKLA-----DRIAVMDA--GEIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADAVRRG  258 (309)
T ss_pred             EEEEecCH--H-HHHhhh-----ceEEEecC--CeEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHHHhhccc
Confidence            55665554  5 877652     57888875  7899999988887654321                 01233333222


Q ss_pred             C----ceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          301 I----PRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       301 ~----~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      .    -.++....-.+++..+...+...+||+|
T Consensus       259 ~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd  291 (309)
T COG1125         259 EPADGEPLLEGFVDRDALSDFLARGRSVLPVVD  291 (309)
T ss_pred             ccccCCccccchhhHHHHHHHHhcCCceeEEEC
Confidence            1    1245555666788888899999999999

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=88.34  E-value=0.56  Score=48.44  Aligned_cols=57  Identities=18%  Similarity=0.328  Sum_probs=47.4

Q ss_pred             cccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCC
Q 013310          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP  287 (445)
Q Consensus       226 ~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~  287 (445)
                      ..+++.|.+  +..+++.++++. +++..+.++.+. +||+|++ ++++|+|+..++++.+.
T Consensus       337 ~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~-~~v~~~~-~~~~g~~~~~~~~~~~~  393 (400)
T PRK10070        337 QGLDAALID--APLAVDAQTPLS-ELLSHVGQAPCA-VPVVDED-QQYVGIISKGMLLRALD  393 (400)
T ss_pred             Cchhhhhcc--CCceeCCCCCHH-HHHHHHHhCCCc-EEEECCC-CcEEEEEEHHHHHHHHH
Confidence            457777754  467899999998 999999987766 9999865 89999999999988654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	445
4hg0_A	292	Crystal Structure Of Magnesium And Cobalt Efflux Pr		1e-06
3jtf_A	129	The Cbs Domain Pair Structure Of A Magnesium And Co		3e-06
3lhh_A	172	The Crystal Structure Of Cbs Domain Protein From Sh		1e-05

>pdb|4HG0|A Chain A, Crystal Structure Of Magnesium And Cobalt Efflux Protein Corc, Northeast Structural Genomics Consortium (nesg) Target Er40 Length = 292

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 67/158 (42%), Gaps = 12/158 (7%)
Query: 189 RAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLD 248
           R +L AL+    +++G+   +  D    + G  D+ ++   +   P     +L  N  LD
Sbjct: 34  RDELLALI----RDSGQNDLIDEDTRDXLEGVXDIADQRVRDIXIPRSQXITLKRNQTLD 89
Query: 249 WEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPR----V 304
            E +  I+   HSR PV S +  +I G+L  K LL   P   +   A S  ++ R    V
Sbjct: 90  -ECLDVIIESAHSRFPVISEDKDHIEGILXAKDLL---PFXRSDAEAFSXDKVLRQAVVV 145
Query: 305 PSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTD 342
           P    +   L EF+    H A V+   G    L  + D
Sbjct: 146 PESKRVDRXLKEFRSQRYHXAIVIDEFGGVSGLVTIED 183

>pdb|3JTF|A Chain A, The Cbs Domain Pair Structure Of A Magnesium And Cobalt Efflux Protein From Bordetella Parapertussis In Complex With Amp Length = 129

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/112 (32%), Positives = 53/112 (47%), Gaps = 10/112 (8%)
Query: 225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284
           E+T  +   P      LD++  L  + +  I+   HSR PVY  +  NIIG+LL K LL 
Sbjct: 4   ERTVADIXVPRSRXDLLDISQPLP-QLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLR 62
Query: 285 VRPETETPVSAVSIRRIPR----VPSDMPLYDILNEFQKGSSHMAAVVKAKG 332
              E      A+ IR + R    +P    L  +L EF+   +H+A V+   G
Sbjct: 63  YXLE-----PALDIRSLVRPAVFIPEVKRLNVLLREFRASRNHLAIVIDEHG 109

>pdb|3LHH|A Chain A, The Crystal Structure Of Cbs Domain Protein From Shewanella Oneidensis Mr-1 Length = 172

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 56/142 (39%), Gaps = 1/142 (0%)
Query: 201 QEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGH 260
           QE    G + H+E   +     L E+T      P      LD+N  LD   +  +    H
Sbjct: 17  QEGSSAGVIEHNEHAXVKNVFRLDERTISSLXVPRSDIVFLDLNLPLDAN-LRTVXQSPH 75
Query: 261 SRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKG 320
           SR PV   N  + +G++  K LL+     E       ++    VP+ +   ++L  F+  
Sbjct: 76  SRFPVCRNNVDDXVGIISAKQLLSESIAGERLELVDLVKNCNFVPNSLSGXELLEHFRTT 135
Query: 321 SSHMAAVVKAKGKSKTLPPMTD 342
            S    VV   G  K L  + D
Sbjct: 136 GSQXVFVVDEYGDLKGLVTLQD 157

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	445
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	4e-27
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	4e-26
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	2e-25
3ocm_A	173	Putative membrane protein; structural genomics, PS	6e-25
3oco_A	153	Hemolysin-like protein containing CBS domains; str	2e-23
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	4e-22
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	6e-21
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	1e-20
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	3e-20
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	2e-19
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	3e-05
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	3e-05

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis} Length = 172

 Score =  105 bits (265), Expect = 4e-27
 Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 5/148 (3%)

Query: 181 GHNEALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFS 240
           GH +    +  ++A++    QE    G + H+E  ++     L E+T    M P      
Sbjct: 1   GHLDDNVTQEDIQAML----QEGSSAGVIEHNEHAMVKNVFRLDERTISSLMVPRSDIVF 56

Query: 241 LDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRR 300
           LD+N  LD   +  ++   HSR PV   N  +++G++  K LL+     E       ++ 
Sbjct: 57  LDLNLPLD-ANLRTVMQSPHSRFPVCRNNVDDMVGIISAKQLLSESIAGERLELVDLVKN 115

Query: 301 IPRVPSDMPLYDILNEFQKGSSHMAAVV 328
              VP+ +   ++L  F+   S M  VV
Sbjct: 116 CNFVPNSLSGMELLEHFRTTGSQMVFVV 143

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B} Length = 156

 Score =  102 bits (257), Expect = 4e-26
 Identities = 32/144 (22%), Positives = 56/144 (38%), Gaps = 13/144 (9%)

Query: 189 RAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLD 248
              +  L+    ++A +      D    +   LD ++    +AM        L  N  ++
Sbjct: 5   AEDVLNLL----RQAHEQEVFDADTLLRLEKVLDFSDLEVRDAMITRSRMNVLKENDSIE 60

Query: 249 WEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPR----V 304
                 ++   HSR PV   +   ++G+L  K LL      E       ++ I R    V
Sbjct: 61  -RITAYVIDTAHSRFPVIGEDKDEVLGILHAKDLLKYMFNPEQ----FHLKSILRPAVFV 115

Query: 305 PSDMPLYDILNEFQKGSSHMAAVV 328
           P    L  +L EF++  +HMA V+
Sbjct: 116 PEGKSLTALLKEFREQRNHMAIVI 139

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630} Length = 148

 Score =  100 bits (251), Expect = 2e-25
 Identities = 22/124 (17%), Positives = 46/124 (37%), Gaps = 1/124 (0%)

Query: 205 KGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVP 264
             G +   E  ++    +  EK   E M P      +  +   + + +  +   G +R P
Sbjct: 2   NAGLIDESEQRLVDNIFEFEEKKIREIMVPRTDMVCIYESDSEE-KILAILKEEGVTRYP 60

Query: 265 VYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHM 324
           V   N  +I+G + ++ L   +           +R I  +  ++ +   L   +K    +
Sbjct: 61  VCRKNKDDILGFVHIRDLYNQKINENKIELEEILRDIIYISENLTIDKALERIRKEKLQL 120

Query: 325 AAVV 328
           A VV
Sbjct: 121 AIVV 124

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis} Length = 173

 Score = 99.9 bits (250), Expect = 6e-25
 Identities = 21/127 (16%), Positives = 46/127 (36%), Gaps = 2/127 (1%)

Query: 202 EAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHS 261
                     +E  ++SG L L E++    MTP      ++++         ++ A  HS
Sbjct: 12  AMPAVPAFGVEERNMVSGVLTLAERSIRSIMTPRTDVSWVNIDDDAA-TIRQQLTAAPHS 70

Query: 262 RVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGS 321
             PV  G+   ++G+   K L+              +R    V   + +  +++  ++  
Sbjct: 71  FFPVCRGSLDEVVGIGRAKDLVADLITEGRVRRNR-LRDPIIVHESIGILRLMDTLKRSR 129

Query: 322 SHMAAVV 328
             +  V 
Sbjct: 130 GQLVLVA 136

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni} Length = 153

 Score = 94.8 bits (237), Expect = 2e-23
 Identities = 30/123 (24%), Positives = 56/123 (45%), Gaps = 4/123 (3%)

Query: 208 ELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYS 267
               ++   +  A ++ +K A + M    S   +DV+  +  +A+   L   +SR PV +
Sbjct: 2   NADEEDANFMQRAFEMNDKVASDVMVDRTSMSVVDVDETIA-DALLLYLEEQYSRFPVTA 60

Query: 268 GNPK-NIIGLLLVKSLLT-VRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMA 325
            N K  IIG      ++   R + +  +S + +R I  VP +M + D++ E       MA
Sbjct: 61  DNDKDKIIGYAYNYDIVRQARIDDKAKISTI-MRDIVSVPENMKVPDVMEEMSAHRVPMA 119

Query: 326 AVV 328
            V+
Sbjct: 120 IVI 122

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus} Length = 130

 Score = 90.6 bits (226), Expect = 4e-22
 Identities = 23/108 (21%), Positives = 42/108 (38%), Gaps = 2/108 (1%)

Query: 222 DLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKS 281
           +  +    + MTP    F +D    ++ E + K      SR  VYS    NIIG +    
Sbjct: 2   NAQDVPVTQVMTPRPVVFRVDATMTIN-EFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLE 60

Query: 282 LLTVRPETETPVSAVSIRRIPR-VPSDMPLYDILNEFQKGSSHMAAVV 328
           L  ++          ++ R  + V ++  L  + ++       +A VV
Sbjct: 61  LFKMQQSGSGQKQLGAVMRPIQVVLNNTALPKVFDQMMTHRLQLALVV 108

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis} Length = 129

 Score = 87.1 bits (217), Expect = 6e-21
 Identities = 33/106 (31%), Positives = 52/106 (49%), Gaps = 2/106 (1%)

Query: 223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSL 282
             E+T  + M P      LD++  L  + +  I+   HSR PVY  +  NIIG+LL K L
Sbjct: 2   NAERTVADIMVPRSRMDLLDISQPLP-QLLATIIETAHSRFPVYEDDRDNIIGILLAKDL 60

Query: 283 LTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVV 328
           L    E    + ++ +R    +P    L  +L EF+   +H+A V+
Sbjct: 61  LRYMLEPALDIRSL-VRPAVFIPEVKRLNVLLREFRASRNHLAIVI 105

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp} Length = 130

 Score = 86.3 bits (215), Expect = 1e-20
 Identities = 21/108 (19%), Positives = 42/108 (38%), Gaps = 6/108 (5%)

Query: 225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284
           + +  + M P      +D+N       + ++    H R+ +Y  +  + I +L V+    
Sbjct: 1   KVSVNDIMVPRNEIVGIDINDDWK-SIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYR 59

Query: 285 VRPETETPVSAVSIRRIPR----VPSDMPLYDILNEFQKGSSHMAAVV 328
           +  E +   +   + R       VP   PL   L +FQ+    +  VV
Sbjct: 60  LMTEKKE-FTKEIMLRAADEIYFVPEGTPLSTQLVKFQRNKKKVGLVV 106

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae} Length = 136

 Score = 85.6 bits (213), Expect = 3e-20
 Identities = 26/108 (24%), Positives = 47/108 (43%), Gaps = 7/108 (6%)

Query: 225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284
           +    + M P     S+        E +  ++   HSR PV   +  +++G+LL K LL 
Sbjct: 2   DLQVRDIMVPRSQMISIKATQTPR-EFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLL- 59

Query: 285 VRPETETPVSAVSIRRIPR----VPSDMPLYDILNEFQKGSSHMAAVV 328
                +    +  ++++ R    VP    L  +L EF+   +HMA V+
Sbjct: 60  -PLILKADGDSDDVKKLLRPATFVPESKRLNVLLREFRANHNHMAIVI 106

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium} Length = 127

 Score = 82.9 bits (206), Expect = 2e-19
 Identities = 31/105 (29%), Positives = 46/105 (43%), Gaps = 2/105 (1%)

Query: 225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284
           ++   + M P     +L  N  LD E +  I+   HSR PV S +  +I G+L+ K LL 
Sbjct: 2   DQRVRDIMIPRSQMITLKRNQTLD-ECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLP 60

Query: 285 VRPETETPVSAVSIRRIPR-VPSDMPLYDILNEFQKGSSHMAAVV 328
                    S   + R    VP    +  +L EF+    HMA V+
Sbjct: 61  FMRSDAEAFSMDKVLRTAVVVPESKRVDRMLKEFRSQRYHMAIVI 105

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 2e-05
 Identities = 64/445 (14%), Positives = 120/445 (26%), Gaps = 130/445 (29%)

Query: 67  LEILQRSGTPSEKKQAAAIF--PVVQKQHQLLVTLL--LCNAASMEALPI--YLDKLFNQ 120
              L         ++    F   V++  ++ L++ +       SM         D+L+N 
Sbjct: 68  FWTLLSKQ-----EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122

Query: 121 YVAI----------ILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLV----RILMIICY 166
                          L +   L   E+ P       G+  G+   W+         + C 
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALL--ELRPAKNVLIDGVL-GSGKTWVALDVCLSYKVQC- 178

Query: 167 PIAYPIGKILDWV-LGH-NEALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLT 224
                  KI  W+ L + N        L+ L  +  Q        +   + I      + 
Sbjct: 179 --KMD-FKIF-WLNLKNCNSP---ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231

Query: 225 EKTAE---EAMTPIESTFSL----DVNSKLDWEAMG---KILA--RGHSRVPVYSGNPKN 272
            +                 L    +V +   W A     KIL   R        S     
Sbjct: 232 AELRRLLKSKPYEN----CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT 287

Query: 273 IIGLLLVKSLLTVRPETET-------------PVSAVSIRRIPRVPS-------DMPLYD 312
            I L      LT   E ++             P   ++    PR  S       D     
Sbjct: 288 HISLDHHSMTLT-PDEVKSLLLKYLDCRPQDLPREVLTT--NPRRLSIIAESIRDGL--A 342

Query: 313 ILNEFQK-GSSHMAAVVKAKGKS-KTLPPMTDGKK--------PKLNEAKGGDCDLTAPL 362
             + ++      +  ++++   S   L P  + +K        P           +   L
Sbjct: 343 TWDNWKHVNCDKLTTIIES---SLNVLEP-AEYRKMFDRLSVFPP-------SAHIPTIL 391

Query: 363 LSK--QDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITL 420
           LS    D     V+V V++      + +    Q  +ST                   I++
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEK----QPKEST-------------------ISI 428

Query: 421 EDVFEELLQEEIVDETDEYVDVHKR 445
             ++ EL       + +    +H+ 
Sbjct: 429 PSIYLELKV-----KLENEYALHRS 448

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159

 Score = 43.2 bits (102), Expect = 3e-05
 Identities = 17/102 (16%), Positives = 37/102 (36%), Gaps = 9/102 (8%)

Query: 222 DLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPK--------NI 273
            L E T  + M   +    + V + L+  A+  +   G++ +PV   + +         I
Sbjct: 10  QLLEATVGQFMIEADKVAHVQVGNNLE-HALLVLTKTGYTAIPVLDPSYRLHGLIGTNMI 68

Query: 274 IGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILN 315
           +  +     +      +  V  V +  IPR+  + P+     
Sbjct: 69  MNSIFGLERIEFEKLDQITVEEVMLTDIPRLHINDPIMKGFG 110

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} Length = 128

 Score = 42.4 bits (100), Expect = 3e-05
 Identities = 15/87 (17%), Positives = 32/87 (36%), Gaps = 5/87 (5%)

Query: 250 EAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR---PETETPVSAVSIRRIPRVPS 306
           +A  ++ A G +  PV  G  +  +G++ +  LL  R   P  +  +    +  +     
Sbjct: 26  DAARRLAASGCACAPVLDG--ERYLGMVHLSRLLEGRKGWPTVKEKLGEELLETVRSYRP 83

Query: 307 DMPLYDILNEFQKGSSHMAAVVKAKGK 333
              L+D L         +  +    G+
Sbjct: 84  GEQLFDNLISVAAAKCSVVPLADEDGR 110

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	445
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	99.95
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	99.93
3ocm_A	173	Putative membrane protein; structural genomics, PS	99.93
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	99.91
3oco_A	153	Hemolysin-like protein containing CBS domains; str	99.9
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	99.88
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	99.87
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	99.86
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	99.86
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	99.84
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	99.83
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	99.83
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.81
4esy_A	170	CBS domain containing membrane protein; structural	99.81
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.8
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.79
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	99.79
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	99.77
3ddj_A	296	CBS domain-containing protein; structural genomics	99.77
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	99.75
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	99.74
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.74
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.73
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	99.73
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	99.73
2oux_A	286	Magnesium transporter; 10001B, structural genomics	99.72
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	99.72
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	99.72
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	99.71
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	99.71
3ddj_A	296	CBS domain-containing protein; structural genomics	99.71
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.7
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	99.7
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	99.69
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	99.69
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	99.68
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	99.68
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	99.68
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	99.68
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.68
4fry_A	157	Putative signal-transduction protein with CBS DOM;	99.68
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.67
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	99.66
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	99.65
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	99.64
1pbj_A	125	Hypothetical protein; structural genomics, domain,	99.64
1pvm_A	184	Conserved hypothetical protein TA0289; structural	99.64
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	99.64
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	99.63
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.63
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	99.63
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	99.62
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.62
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	99.61
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	99.59
1vr9_A	213	CBS domain protein/ACT domain protein; structural	99.58
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	99.56
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	99.55
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	99.54
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	99.53
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	99.5
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	99.5
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	99.47
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	99.43
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.43
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	99.27
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	99.17
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.17
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	98.77
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	98.64
3fio_A	70	A cystathionine beta-synthase domain protein fused	98.53
1vr9_A	213	CBS domain protein/ACT domain protein; structural	98.51
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	98.46
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	98.38
4esy_A	170	CBS domain containing membrane protein; structural	98.36
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	98.3
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	98.23
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	98.23
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	98.07
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	98.05
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	98.04
4fry_A	157	Putative signal-transduction protein with CBS DOM;	98.02
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	98.01
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	98.0
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	97.98
3fio_A	70	A cystathionine beta-synthase domain protein fused	97.98
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	97.97
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	97.96
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	97.96
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	97.95
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	97.93
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	97.92
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	97.91
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	97.9
1pbj_A	125	Hypothetical protein; structural genomics, domain,	97.89
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	97.87
1pvm_A	184	Conserved hypothetical protein TA0289; structural	97.87
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	97.86
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	97.85
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	97.85
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	97.85
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	97.84
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	97.84
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	97.83
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	97.83
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	97.83
3oco_A	153	Hemolysin-like protein containing CBS domains; str	97.81
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	97.8
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	97.8
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	97.8
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	97.78
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	97.77
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	97.77
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	97.77
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	97.76
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	97.74
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	97.74
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	97.73
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	97.72
3ocm_A	173	Putative membrane protein; structural genomics, PS	97.72
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	97.71
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	97.64
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	97.6
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	97.44
2oux_A	286	Magnesium transporter; 10001B, structural genomics	97.31
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	97.27
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	97.13
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	96.38
2pli_A	91	Uncharacterized protein; CORC-associated region, M	94.71
3llb_A	83	Uncharacterized protein; protein PA3983, unknown f	94.47
3lae_A	81	UPF0053 protein HI0107; APC85784.2, conserved prot	94.46
2rk5_A	87	Putative hemolysin; structural genomics, PSI-2, MC	94.12
2r2z_A	93	Hemolysin; APC85144, enterococcus faecalis V583, S	93.9
2p13_A	90	CBS domain; alpha-beta structure, structural genom	93.72
2pls_A	86	CBS domain protein; APC86064.2, CORC/HLYC transpor	93.49
2o3g_A	92	Putative protein; APC85631.1, neisseria meningitid	93.33
2p4p_A	86	Hypothetical protein HD1797; CORC_HLYC, PFAM: PF03	93.23
2oai_A	94	Hemolysin; PFAM03471, xylella fastidiosa temecula1	93.08
2p3h_A	101	Uncharacterized CBS domain-containing protein; str	93.07
3ded_A	113	Probable hemolysin; structural genomics, P protein	92.79
2nqw_A	93	CBS domain protein; PFAM03471, hemolysins, CBS dom	89.92

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=99.95  E-value=4.6e-28  Score=218.52  Aligned_cols=167  Identities=25%  Similarity=0.466  Sum_probs=114.8

Q ss_pred             cccccHHHHHHHHHHhhhhhccCCCCCHHHHHHHHHhhcCcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEE
Q 013310          184 EALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRV  263 (445)
Q Consensus       184 ~~~~s~eEl~~li~~~~~e~~~~g~l~~~E~~~l~~~~~l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~  263 (445)
                      ...+|++||+.+++    ++.+.|.++++|++++++++++.+.+|+++|+|+.+++++++++++. ++++.|.+++++++
T Consensus         4 ~~~~t~~el~~l~~----~~~~~g~l~~~e~~~i~~~~~l~~~~v~diM~~~~~~~~v~~~~~v~-~a~~~m~~~~~~~~   78 (172)
T 3lhh_A            4 DDNVTQEDIQAMLQ----EGSSAGVIEHNEHAMVKNVFRLDERTISSLMVPRSDIVFLDLNLPLD-ANLRTVMQSPHSRF   78 (172)
T ss_dssp             -------------------------------------------CTTTTSEEGGGCCCEETTSCHH-HHHHHHHTCCCSEE
T ss_pred             cccCCHHHHHHHHH----HHHHcCCCCHHHHHHHHHHhccCCCCHHHhCccHHHeEEEcCCCCHH-HHHHHHHhCCCCEE
Confidence            45689999999998    45567999999999999999999999999999988999999999998 99999999999999


Q ss_pred             EeEeCCCCCEEEEEEhhhhhccCCCC-CCccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEccCCCccCCCCCCC
Q 013310          264 PVYSGNPKNIIGLLLVKSLLTVRPET-ETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTD  342 (445)
Q Consensus       264 PV~~~~~~~ivGiv~~kDll~~~~~~-~~~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Giv~~T~  342 (445)
                      ||++++.++++|+|+.+|+++....+ ..+++++| ++++++++++++.++++.|.+++.+.+||+|             
T Consensus        79 pVvd~~~~~lvGivt~~dl~~~~~~~~~~~v~~im-~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-------------  144 (172)
T 3lhh_A           79 PVCRNNVDDMVGIISAKQLLSESIAGERLELVDLV-KNCNFVPNSLSGMELLEHFRTTGSQMVFVVD-------------  144 (172)
T ss_dssp             EEESSSTTSEEEEEEHHHHHHHHHTTCCCCGGGGC-BCCEEEETTCCHHHHHHHHHHHTCSEEEEEC-------------
T ss_pred             EEEeCCCCeEEEEEEHHHHHHHHhhcCcccHHHHh-cCCeEeCCCCCHHHHHHHHHHcCCeEEEEEe-------------
Confidence            99986547999999999998864332 57899998 9999999999999999999999999999999             


Q ss_pred             CCcccccccCCCCCCCCcccccccccCCCceEeeccCCCccccccccCCCCCCCCCccccccccCCCCCCceEEEeehhh
Q 013310          343 GKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLED  422 (445)
Q Consensus       343 ~di~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~~~~~~~~~~~~~~~~tl~g~~~~~~~~e~g~l~GIVT~~D  422 (445)
                                                                                         ++|+++||||.+|
T Consensus       145 -------------------------------------------------------------------~~g~lvGiit~~D  157 (172)
T 3lhh_A          145 -------------------------------------------------------------------EYGDLKGLVTLQD  157 (172)
T ss_dssp             -------------------------------------------------------------------TTSCEEEEEEHHH
T ss_pred             -------------------------------------------------------------------CCCCEEEEeeHHH
Confidence                                                                               6899999999999


Q ss_pred             HHHHHhcCccCCCCc
Q 013310          423 VFEELLQEEIVDETD  437 (445)
Q Consensus       423 ile~l~g~ei~de~d  437 (445)
                      ++++++| ++.||+|
T Consensus       158 il~~l~~-~~~de~~  171 (172)
T 3lhh_A          158 MMDALTG-EFFQEDG  171 (172)
T ss_dssp             HHHHHHT-TCC----
T ss_pred             HHHHHhC-CCccccC
Confidence            9999997 9999875

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=99.93  E-value=5.4e-26  Score=201.55  Aligned_cols=138  Identities=22%  Similarity=0.328  Sum_probs=126.0

Q ss_pred             cccHHHHHHHHHHhhhhhccCCCCCHHHHHHHHHhhcCcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEe
Q 013310          186 LFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPV  265 (445)
Q Consensus       186 ~~s~eEl~~li~~~~~e~~~~g~l~~~E~~~l~~~~~l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV  265 (445)
                      .+|++||+.+++    +++++|.++++|++++++++++.+.+|+++|+|+.+++++++++++. ++++.|.+++++++||
T Consensus         2 ~~t~~el~~li~----~~~~~g~l~~~e~~~i~~~~~l~~~~v~diM~~~~~~~~v~~~~~i~-~a~~~m~~~~~~~~pV   76 (156)
T 3oi8_A            2 NASAEDVLNLLR----QAHEQEVFDADTLLRLEKVLDFSDLEVRDAMITRSRMNVLKENDSIE-RITAYVIDTAHSRFPV   76 (156)
T ss_dssp             CCCHHHHHHHHH----HHHHTTSSCHHHHHHHHHHHHHTTCBGGGTCEEGGGCCCEETTCCHH-HHHHHHHHHCCSEEEE
T ss_pred             CCCHHHHHHHHH----hHHhcCCcCHHHHHHHHHHhccCCCCHhheeeeHHHeEEECCCCCHH-HHHHHHHHCCCCEEEE
Confidence            478999999998    45567999999999999999999999999999988899999999998 9999999999999999


Q ss_pred             EeCCCCCEEEEEEhhhhhccCCC-CCCccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          266 YSGNPKNIIGLLLVKSLLTVRPE-TETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       266 ~~~~~~~ivGiv~~kDll~~~~~-~~~~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      ++++.++++|+|+.+|+++.... ...+++++| ++++++++++++.++++.|.+++.+.+||+|
T Consensus        77 vd~~~~~lvGivt~~dl~~~~~~~~~~~v~~im-~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd  140 (156)
T 3oi8_A           77 IGEDKDEVLGILHAKDLLKYMFNPEQFHLKSIL-RPAVFVPEGKSLTALLKEFREQRNHMAIVID  140 (156)
T ss_dssp             ESSSTTCEEEEEEGGGGGGGSSCGGGCCHHHHC-BCCCEEETTSBHHHHHHHHHHTTCCEEEEEC
T ss_pred             EcCCCCcEEEEEEHHHHHHHHHcCCcccHHHHc-CCCEEECCCCCHHHHHHHHHhcCCeEEEEEC
Confidence            98764599999999999987654 457889987 5688999999999999999999999999999

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=99.93  E-value=6e-26  Score=205.27  Aligned_cols=156  Identities=21%  Similarity=0.302  Sum_probs=136.1

Q ss_pred             hccCCCCCHHHHHHHHHhhcCcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhh
Q 013310          203 AGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSL  282 (445)
Q Consensus       203 ~~~~g~l~~~E~~~l~~~~~l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDl  282 (445)
                      +.++|.++++|++++.++++|.+.+|+++|+|+++++++++++++. ++++.|.+++++++||++++.++++|+|+.+|+
T Consensus        13 ~~~~g~l~~~e~~~i~~~l~l~~~~v~diM~~~~~v~~v~~~~tv~-ea~~~m~~~~~~~~pVvd~~~~~lvGivt~~Dl   91 (173)
T 3ocm_A           13 MPAVPAFGVEERNMVSGVLTLAERSIRSIMTPRTDVSWVNIDDDAA-TIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKDL   91 (173)
T ss_dssp             -----CCCHHHHHHHHHHHHHTTSCSTTTSEEGGGCCCEETTSCHH-HHHHHHHHSSCSEEEEESSSTTSEEEEEEHHHH
T ss_pred             HHhcCCcCHHHHHHHHHHhccCCCCHHHhCCcHHHeEEEeCCCCHH-HHHHHHHhCCCCEEEEEeCCCCCEEEEEEHHHH
Confidence            3456999999999999999999999999999988999999999998 999999999999999998755799999999999


Q ss_pred             hccCCC-CCCccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEccCCCccCCCCCCCCCcccccccCCCCCCCCcc
Q 013310          283 LTVRPE-TETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAP  361 (445)
Q Consensus       283 l~~~~~-~~~~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Giv~~T~~di~~~i~~~~~~~~~~~~  361 (445)
                      +..... ...+++  |++++++|++++++.++++.|.+++.+.+||+|                                
T Consensus        92 ~~~~~~~~~~~v~--~~~~~~~v~~~~~l~~al~~m~~~~~~~~~Vvd--------------------------------  137 (173)
T 3ocm_A           92 VADLITEGRVRRN--RLRDPIIVHESIGILRLMDTLKRSRGQLVLVAD--------------------------------  137 (173)
T ss_dssp             HHHHHHHSSCCGG--GSBCCCEECGGGCHHHHHHHHHHSTTCCEEEEC--------------------------------
T ss_pred             HHHHhcCCcchhH--hcCCCeEECCCCcHHHHHHHHHHcCCeEEEEEe--------------------------------
Confidence            876422 245677  578899999999999999999999999999999                                


Q ss_pred             cccccccCCCceEeeccCCCccccccccCCCCCCCCCccccccccCCCCCCceEEEeehhhHHHHHhcCccCCCCccccc
Q 013310          362 LLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELLQEEIVDETDEYVD  441 (445)
Q Consensus       362 ~~~~~~~~~~~~~v~~~~~i~~~~~~~~~~~~~~~~tl~g~~~~~~~~e~g~l~GIVT~~Dile~l~g~ei~de~d~~~~  441 (445)
                                                                      ++|+++||||.+||+++++| ++.||+|.+.-
T Consensus       138 ------------------------------------------------e~g~lvGiIT~~Dil~~l~~-~i~de~~~~~~  168 (173)
T 3ocm_A          138 ------------------------------------------------EFGAIEGLVTPIDVFEAIAG-EFPDEDELPDI  168 (173)
T ss_dssp             ------------------------------------------------TTCCEEEEECHHHHHHHHHC-CCCCTTSCC--
T ss_pred             ------------------------------------------------CCCCEEEEEeHHHHHHHHhC-cCCCccccHhh
Confidence                                                            68999999999999999998 99999886543


Q ss_pred             c
Q 013310          442 V  442 (445)
Q Consensus       442 ~  442 (445)
                      +
T Consensus       169 ~  169 (173)
T 3ocm_A          169 V  169 (173)
T ss_dssp             -
T ss_pred             H
Confidence            3

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=99.91  E-value=8.3e-25  Score=191.66  Aligned_cols=123  Identities=18%  Similarity=0.361  Sum_probs=98.9

Q ss_pred             cCCCCCHHHHHHHHHhhcCcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc
Q 013310          205 KGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (445)
Q Consensus       205 ~~g~l~~~E~~~l~~~~~l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~  284 (445)
                      ++|.++++|++++++++++.+.+|+++|+|+.+++++++++++. ++++.|.+++++++||++++.++++|+++.+|+++
T Consensus         2 ~~g~l~~~e~~~i~~~~~l~~~~v~diM~~~~~~~~v~~~~~~~-~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~   80 (148)
T 3lv9_A            2 NAGLIDESEQRLVDNIFEFEEKKIREIMVPRTDMVCIYESDSEE-KILAILKEEGVTRYPVCRKNKDDILGFVHIRDLYN   80 (148)
T ss_dssp             ----------------CGGGTCBGGGTSEETTTCCCEETTCCHH-HHHHHHHHSCCSEEEEESSSTTSEEEEEEHHHHHH
T ss_pred             CCCccCHHHHHHHHHHhccCCCCHHHccccHHHeEEECCCCCHH-HHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHH
Confidence            35899999999999999999999999999988899999999998 99999999999999999875479999999999987


Q ss_pred             cCCCC-CCccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          285 VRPET-ETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       285 ~~~~~-~~~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      ....+ ..+++++| ++++++++++++.++++.|.+++.+.+||+|
T Consensus        81 ~~~~~~~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd  125 (148)
T 3lv9_A           81 QKINENKIELEEIL-RDIIYISENLTIDKALERIRKEKLQLAIVVD  125 (148)
T ss_dssp             HHHHHSCCCGGGTC-BCCEEEETTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             HHhcCCCccHHHhc-CCCeEECCCCCHHHHHHHHHhcCCeEEEEEe
Confidence            64333 57899998 8999999999999999999999999999999

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=99.90  E-value=6.5e-25  Score=193.72  Aligned_cols=149  Identities=28%  Similarity=0.428  Sum_probs=123.7

Q ss_pred             CCCHHHHHHHHHhhcCcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeE-eCCCCCEEEEEEhhhhhccC
Q 013310          208 ELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVY-SGNPKNIIGLLLVKSLLTVR  286 (445)
Q Consensus       208 ~l~~~E~~~l~~~~~l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~-~~~~~~ivGiv~~kDll~~~  286 (445)
                      .++++|++++++++++.+.+|+++|+|+++++++++++++. ++++.|.+++++++||+ +++.++++|+|+.+|+++..
T Consensus         2 ~l~~~e~~~i~~~~~l~~~~v~~iM~~~~~~~~v~~~~~~~-~a~~~m~~~~~~~~pVv~d~~~~~lvGivt~~dl~~~~   80 (153)
T 3oco_A            2 NADEEDANFMQRAFEMNDKVASDVMVDRTSMSVVDVDETIA-DALLLYLEEQYSRFPVTADNDKDKIIGYAYNYDIVRQA   80 (153)
T ss_dssp             ------CCHHHHHHHHHHCBHHHHSEEGGGCCCEETTSBHH-HHHHHHHHHCCSEEEEEETTEEEEEEEEEEHHHHHHHH
T ss_pred             CcCHHHHHHHHHhcccCCCEeeeEecchhheEEEcCCCCHH-HHHHHHHhCCCCEEEEEECCCCCcEEEEEEHHHHHhHH
Confidence            36778999999999999999999999988899999999998 99999999999999999 54447899999999998754


Q ss_pred             CC-CCCccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEccCCCccCCCCCCCCCcccccccCCCCCCCCcccccc
Q 013310          287 PE-TETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSK  365 (445)
Q Consensus       287 ~~-~~~~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Giv~~T~~di~~~i~~~~~~~~~~~~~~~~  365 (445)
                      .. ...+++++| ++++++++++++.++++.|.+++.+.+||+|                                    
T Consensus        81 ~~~~~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd------------------------------------  123 (153)
T 3oco_A           81 RIDDKAKISTIM-RDIVSVPENMKVPDVMEEMSAHRVPMAIVID------------------------------------  123 (153)
T ss_dssp             HHHTTSBGGGTC-BCCEEEETTSBHHHHHHHHHHTTCSCEEEEC------------------------------------
T ss_pred             hcCCCCcHHHHh-CCCeEECCCCCHHHHHHHHHHcCCcEEEEEe------------------------------------
Confidence            32 257899998 9999999999999999999999999999999                                    


Q ss_pred             cccCCCceEeeccCCCccccccccCCCCCCCCCccccccccCCCCCCceEEEeehhhHHHHHhcCccCCCCccc
Q 013310          366 QDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELLQEEIVDETDEY  439 (445)
Q Consensus       366 ~~~~~~~~~v~~~~~i~~~~~~~~~~~~~~~~tl~g~~~~~~~~e~g~l~GIVT~~Dile~l~g~ei~de~d~~  439 (445)
                                                                  ++|+++||||.+|++++++| ++.||+|++
T Consensus       124 --------------------------------------------~~g~~vGivt~~dil~~l~~-~~~de~~~~  152 (153)
T 3oco_A          124 --------------------------------------------EYGGTSGIITDKDVYEELFG-NLRDEQDDE  152 (153)
T ss_dssp             --------------------------------------------TTSCEEEEECHHHHHHHHHC----------
T ss_pred             --------------------------------------------CCCCEEEEeeHHHHHHHHhc-cCCCcccCC
Confidence                                                        68999999999999999998 999998864

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=99.88  E-value=1e-22  Score=176.06  Aligned_cols=132  Identities=30%  Similarity=0.486  Sum_probs=109.6

Q ss_pred             ccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCC---CCCCccccccccCC
Q 013310          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP---ETETPVSAVSIRRI  301 (445)
Q Consensus       225 ~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~---~~~~~v~~im~~~~  301 (445)
                      +.+|+++|+|+.+++++++++++. ++++.|.+++++++||++++.++++|+|+.+|+++...   ....+++++| +++
T Consensus         2 ~~~v~~iM~~~~~~~~v~~~~~v~-~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~~~~~~~v~~~m-~~~   79 (136)
T 3lfr_A            2 DLQVRDIMVPRSQMISIKATQTPR-EFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLPLILKADGDSDDVKKLL-RPA   79 (136)
T ss_dssp             -CBHHHHSEEGGGCCCEETTCCHH-HHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGGSSSGGGCCGGGTC-BCC
T ss_pred             CCChHhccccHHHEEEEcCCCCHH-HHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHhccCCCcCHHHHc-CCC
Confidence            578999999988899999999998 99999999999999999875469999999999998643   2346889987 558


Q ss_pred             ceeCCCCCHHHHHHHHhhCCCeEEEEEccCCCccCCCCCCCCCcccccccCCCCCCCCcccccccccCCCceEeeccCCC
Q 013310          302 PRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPL  381 (445)
Q Consensus       302 ~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Giv~~T~~di~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i  381 (445)
                      +++++++++.++++.|.+++.+.+||+|                                                    
T Consensus        80 ~~v~~~~~l~~~~~~m~~~~~~~~~Vvd----------------------------------------------------  107 (136)
T 3lfr_A           80 TFVPESKRLNVLLREFRANHNHMAIVID----------------------------------------------------  107 (136)
T ss_dssp             CEEETTCBHHHHHHHHHHHTCCEEEEEC----------------------------------------------------
T ss_pred             eEECCCCcHHHHHHHHHhcCCeEEEEEe----------------------------------------------------
Confidence            9999999999999999999999999999                                                    


Q ss_pred             ccccccccCCCCCCCCCccccccccCCCCCCceEEEeehhhHHHHHhcCccCCCCccc
Q 013310          382 SSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELLQEEIVDETDEY  439 (445)
Q Consensus       382 ~~~~~~~~~~~~~~~~tl~g~~~~~~~~e~g~l~GIVT~~Dile~l~g~ei~de~d~~  439 (445)
                                                  ++|+++||||.+|++++++| ++.||+|.+
T Consensus       108 ----------------------------~~g~lvGiit~~Dil~~l~~-~~~de~~~~  136 (136)
T 3lfr_A          108 ----------------------------EYGGVAGLVTIEDVLEQIVG-DIEDEHDVE  136 (136)
T ss_dssp             ----------------------------TTSCEEEEEEHHHHHTTC------------
T ss_pred             ----------------------------CCCCEEEEEEHHHHHHHHhC-CCcCcccCC
Confidence                                        68999999999999999998 999998753

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=99.87  E-value=6.7e-22  Score=169.23  Aligned_cols=105  Identities=31%  Similarity=0.490  Sum_probs=94.7

Q ss_pred             CcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCCCCccccccccCCc
Q 013310          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIP  302 (445)
Q Consensus       223 l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~im~~~~~  302 (445)
                      ..+.+|+++|+|+.+++++++++++. ++++.|.+++++++||++++.++++|+++.+|+++.......+++++| ++++
T Consensus         2 ~~~~~v~diM~~~~~~~~v~~~~~~~-~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~~~~~v~~~m-~~~~   79 (129)
T 3jtf_A            2 NAERTVADIMVPRSRMDLLDISQPLP-QLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYMLEPALDIRSLV-RPAV   79 (129)
T ss_dssp             --CCBHHHHCEEGGGCCCEETTSCHH-HHHHHHHHSCCSEEEEESSSTTCEEEEEEGGGGGGGGTCTTSCGGGGC-BCCC
T ss_pred             CCCCCHHHhCccHHHeEEECCCCCHH-HHHHHHHHcCCCEEEEEcCCCCcEEEEEEHHHHHhHhccCCcCHHHHh-CCCe
Confidence            46789999999988899999999998 999999999999999998754799999999999987655567899986 5688


Q ss_pred             eeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          303 RVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       303 ~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      ++++++++.++++.|.+++.+.+||+|
T Consensus        80 ~v~~~~~l~~~~~~m~~~~~~~~pVvd  106 (129)
T 3jtf_A           80 FIPEVKRLNVLLREFRASRNHLAIVID  106 (129)
T ss_dssp             EEETTCBHHHHHHHHHTSSCCEEEEEC
T ss_pred             EeCCCCcHHHHHHHHHhcCCeEEEEEe
Confidence            999999999999999999999999999

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=99.86  E-value=5.7e-22  Score=176.07  Aligned_cols=103  Identities=19%  Similarity=0.292  Sum_probs=90.6

Q ss_pred             CcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCC--------CCCccc
Q 013310          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE--------TETPVS  294 (445)
Q Consensus       223 l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~--------~~~~v~  294 (445)
                      |-..+++++|+|+.+++++++++|+. ++++.|.+++++++||+|++ ++++|+++.+|++++...        ...+++
T Consensus        12 ~l~~~~~~iM~P~~~v~~v~~~~t~~-~a~~~m~~~~~s~~pVvd~~-~~lvGiit~~Di~~~~~~~~~~~~~~~~~~v~   89 (156)
T 3k6e_A           12 FLLGQEETFLTPAKNLAVLIDTHNAD-HATLLLSQMTYTRVPVVTDE-KQFVGTIGLRDIMAYQMEHDLSQEIMADTDIV   89 (156)
T ss_dssp             HHHTTGGGGEEETTSSCCEETTSBHH-HHHHHHTTSSSSEEEEECC--CBEEEEEEHHHHHHHHHHHTCCHHHHTTSBGG
T ss_pred             HhhccHHHhCcchhHeEEECCcCCHH-HHHHHHHHcCCcEEEEEcCC-CcEEEEEEecchhhhhhhcccccccccccCHH
Confidence            34457999999999999999999998 99999999999999999865 799999999999764321        246899


Q ss_pred             cccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          295 AVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       295 ~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      ++|.++++++++++++.++++.|.+++  ++||+|
T Consensus        90 ~im~~~~~~v~~~~~l~~~~~~m~~~~--~lpVVd  122 (156)
T 3k6e_A           90 HMTKTDVAVVSPDFTITEVLHKLVDES--FLPVVD  122 (156)
T ss_dssp             GTCBCSCCCBCTTCCHHHHHHHTTTSS--EEEEEC
T ss_pred             HhhcCCceecccccHHHHHHHHHHHcC--CeEEEe
Confidence            999999999999999999999998775  599999

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=99.86  E-value=6.6e-22  Score=169.74  Aligned_cols=103  Identities=20%  Similarity=0.357  Sum_probs=92.2

Q ss_pred             ccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCC----CCccccccccC
Q 013310          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET----ETPVSAVSIRR  300 (445)
Q Consensus       225 ~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~----~~~v~~im~~~  300 (445)
                      +.+|+++|+|+.+++++++++++. ++++.|.+++++++||++++.++++|+++.+|++++..++    ..+++++| ++
T Consensus         1 ~~~v~~iM~~~~~~~~v~~~~~v~-~a~~~m~~~~~~~~pVv~~~~~~lvGivt~~dl~~~~~~~~~~~~~~v~~~m-~~   78 (130)
T 3hf7_A            1 KVSVNDIMVPRNEIVGIDINDDWK-SIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKEFTKEIMLRAA-DE   78 (130)
T ss_dssp             CCBHHHHSEEGGGCCEEETTSCHH-HHHHHHHTCSSSEEEEESSSGGGEEEEEEHHHHHHHHTSSSCCCHHHHHHHS-BC
T ss_pred             CcCHHHhCccHHHEEEEcCCCCHH-HHHHHHHHCCCCeEEEEcCCCCcEEEEEEHHHHHHHHhccCccchhhHHHhc-cC
Confidence            368999999988899999999998 9999999999999999976557999999999998765442    24678887 88


Q ss_pred             CceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          301 IPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       301 ~~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      ++++++++++.++++.|.+++.+.+||+|
T Consensus        79 ~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd  107 (130)
T 3hf7_A           79 IYFVPEGTPLSTQLVKFQRNKKKVGLVVD  107 (130)
T ss_dssp             CCEEETTCBHHHHHHHHHHHCCCEEEEEC
T ss_pred             CeEeCCCCcHHHHHHHHHhcCCeEEEEEc
Confidence            89999999999999999999999999999

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=99.84  E-value=2.3e-21  Score=166.02  Aligned_cols=106  Identities=25%  Similarity=0.350  Sum_probs=91.7

Q ss_pred             cCcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCC--CCCcccccccc
Q 013310          222 DLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE--TETPVSAVSIR  299 (445)
Q Consensus       222 ~l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~--~~~~v~~im~~  299 (445)
                      +|.+.+|+++|+|+.+++++++++++. ++++.|.+++++++||++++.++++|+++.+|+++....  ...+++++| +
T Consensus         2 ~l~~~~v~~iM~~~~~v~~v~~~~~~~-~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~~~~~~~v~~~m-~   79 (130)
T 3i8n_A            2 NAQDVPVTQVMTPRPVVFRVDATMTIN-EFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLELFKMQQSGSGQKQLGAVM-R   79 (130)
T ss_dssp             -----CCTTTSCCBCCCCEEETTSBHH-HHHHHTTTCSCSCCEEESSSTTCEEEECCHHHHHHHHHTTTTTSBHHHHS-E
T ss_pred             CcCcCCHhhCCCcHHHEEEEcCCCCHH-HHHHHHHhCCCCEEEEEeCCCCcEEEEEEHHHHHHHHhcCCCcCCHHHHh-c
Confidence            467899999999988888999999998 999999999999999998754799999999999876432  246789997 6


Q ss_pred             CCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          300 RIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       300 ~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      ++.++++++++.++++.|.+++.+.+||+|
T Consensus        80 ~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd  109 (130)
T 3i8n_A           80 PIQVVLNNTALPKVFDQMMTHRLQLALVVD  109 (130)
T ss_dssp             ECCEEETTSCHHHHHHHHHHHTCCEEEEEC
T ss_pred             CCcCcCCCCcHHHHHHHHHHcCCeEEEEEc
Confidence            788999999999999999999999999999

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=99.83  E-value=1.3e-20  Score=160.66  Aligned_cols=103  Identities=30%  Similarity=0.470  Sum_probs=91.9

Q ss_pred             ccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCC--CCCccccccccCCc
Q 013310          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE--TETPVSAVSIRRIP  302 (445)
Q Consensus       225 ~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~--~~~~v~~im~~~~~  302 (445)
                      +.+|+++|+|+.+++++++++++. ++++.|.+++++++||++++.++++|+++.+|+++....  ...+++++| +++.
T Consensus         2 ~~~v~diM~~~~~~~~v~~~~~~~-~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~~~~~~v~~~m-~~~~   79 (127)
T 3nqr_A            2 DQRVRDIMIPRSQMITLKRNQTLD-ECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDAEAFSMDKVL-RTAV   79 (127)
T ss_dssp             -CBHHHHSEEGGGCCCEETTCCHH-HHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGSTTCCCCCHHHHC-BCCC
T ss_pred             CcCHHHhcccHHHeEEEcCCCCHH-HHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhccCCCCCHHHHc-CCCe
Confidence            578999999877899999999998 999999999999999998754799999999999976432  346889987 5678


Q ss_pred             eeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          303 RVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       303 ~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      ++++++++.++++.|.+++.+.+||+|
T Consensus        80 ~v~~~~~l~~a~~~m~~~~~~~lpVvd  106 (127)
T 3nqr_A           80 VVPESKRVDRMLKEFRSQRYHMAIVID  106 (127)
T ss_dssp             EEETTCBHHHHHHHHHHTTCCEEEEEC
T ss_pred             EECCCCcHHHHHHHHHhcCCeEEEEEe
Confidence            999999999999999999999999999

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=99.83  E-value=6e-20  Score=170.43  Aligned_cols=127  Identities=6%  Similarity=0.065  Sum_probs=113.4

Q ss_pred             ccHHHHHHHHHHhhhhhccCCCCCHHHHHHHHHhhcCcccccccccccCCceEEeeCCCCccHHHHHHHHHc---CCcEE
Q 013310          187 FRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILAR---GHSRV  263 (445)
Q Consensus       187 ~s~eEl~~li~~~~~e~~~~g~l~~~E~~~l~~~~~l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~---~~s~~  263 (445)
                      +.+++.+.++.          .++++|++++++++.+.+.+|+++|++  +++++++++++. ++++.|.++   +++.+
T Consensus        25 l~~~~~~~~l~----------~l~~~e~~~i~~~l~~~~~~v~~iM~~--~~~~v~~~~tv~-eal~~~~~~~~~~~~~~   91 (205)
T 3kxr_A           25 LPESFTDRALA----------QMGERQRQRFELYDQYSENEIGRYTDH--QMLVLSDKATVA-QAQRFFRRIELDCNDNL   91 (205)
T ss_dssp             SCHHHHHHHHH----------HSCHHHHHHHHHHHHSCTTCGGGGCBC--CCCEEETTCBHH-HHHHHHHHCCCTTCCEE
T ss_pred             CCHHHHHHHHH----------cCCHHHHHHHHHHhCCCcchHHhhccC--ceEEECCCCcHH-HHHHHHHhhCccCeeEE
Confidence            45566666664          468999999999999999999999996  788999999998 999999987   78999


Q ss_pred             EeEeCCCCCEEEEEEhhhhhccCCCCCCccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          264 PVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       264 PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      ||++++ ++++|+|+.+|++...  .+.+++++|.+++++|++++++.++++.|.+++.+.+||+|
T Consensus        92 ~Vvd~~-~~lvGivt~~dll~~~--~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD  154 (205)
T 3kxr_A           92 FIVDEA-DKYLGTVRRYDIFKHE--PHEPLISLLSEDSRALTANTTLLDAAEAIEHSREIELPVID  154 (205)
T ss_dssp             EEECTT-CBEEEEEEHHHHTTSC--TTSBGGGGCCSSCCCEETTSCHHHHHHHHHTSSCSEEEEEC
T ss_pred             EEEcCC-CeEEEEEEHHHHHhCC--CcchHHHHhcCCCeEECCCCCHHHHHHHHHhcCCCEEEEEc
Confidence            999864 8999999999998753  35789999989999999999999999999999999999999

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.81  E-value=4e-21  Score=190.35  Aligned_cols=210  Identities=10%  Similarity=0.133  Sum_probs=159.8

Q ss_pred             CCCHHHHHHHHHhhcCc-ccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccC
Q 013310          208 ELTHDETTIISGALDLT-EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR  286 (445)
Q Consensus       208 ~l~~~E~~~l~~~~~l~-~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~  286 (445)
                      .++++|+++++++++|- +.+|+|+|+|+.++++++.++++. ++++.|.+++++++||++++.++++|+++.+|++...
T Consensus         3 ~~~~~~~~~~~~~~~~l~~~~v~dim~~~~~vv~v~~~~tv~-~a~~~~~~~~~~~~pV~d~~~~~~vGiv~~~Dl~~~~   81 (334)
T 2qrd_G            3 DVQETQKGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVK-TSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVI   81 (334)
T ss_dssp             SHHHHHHHHHHHHHHHHHHSBGGGGSCSEEEEEEEETTSBHH-HHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHhcCchhhhCCCCCCEEEEcCCCCHH-HHHHHHHHcCCeEEEEEeCCCCeEEEEEEHHHHHHHH
Confidence            45678899999999954 499999999999999999999998 9999999999999999997667999999999998642


Q ss_pred             C--------CC------CCccc-------cccccCC--ceeCCCCCHHHHHHHHhhCCCeEEEEEccCCC-----ccCCC
Q 013310          287 P--------ET------ETPVS-------AVSIRRI--PRVPSDMPLYDILNEFQKGSSHMAAVVKAKGK-----SKTLP  338 (445)
Q Consensus       287 ~--------~~------~~~v~-------~im~~~~--~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~-----~~Giv  338 (445)
                      .        ..      ..++.       ++|.+++  +++++++++.++++.|.+++.+.+||+|++|+     +.|++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~~~~Giv  161 (334)
T 2qrd_G           82 KYYYQSSSFPEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVL  161 (334)
T ss_dssp             HHHHHHCSCGGGGGGGGSCBHHHHHHHHHHHTCSCSSCCCBCTTSBHHHHHHHHHHSCCSEEEEEEEETTTTEEEEEEEE
T ss_pred             HHHhhccCCccHHHHHhhhchhhHHHHHHhhccCCCceeeeCCCCcHHHHHHHHHHCCceEEEEEeCCCCcCccceEEEe
Confidence            1        11      22222       2366777  89999999999999999999999999999876     99999


Q ss_pred             CCCCCCcccccccCCCCCC-CCccccccc-ccCCCceEeeccCCCccccccccCCCCCCCCCccccccccCCCCCCceEE
Q 013310          339 PMTDGKKPKLNEAKGGDCD-LTAPLLSKQ-DEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIG  416 (445)
Q Consensus       339 ~~T~~di~~~i~~~~~~~~-~~~~~~~~~-~~~~~~~~v~~~~~i~~~~~~~~~~~~~~~~tl~g~~~~~~~~e~g~l~G  416 (445)
                        |.+|+++.+........ ...+..... .+....+.++++.++.+..+.+........-+++         ++|+++|
T Consensus       162 --t~~dl~~~~~~~~~~~~~~~~~v~~l~~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~~Vvd---------~~~~~~G  230 (334)
T 2qrd_G          162 --TQYRILKFISMNCKETAMLRVPLNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVN---------SEGTLLN  230 (334)
T ss_dssp             --EHHHHHHHHHHHCGGGGGCCCBGGGSSCSBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEC---------TTCBEEE
T ss_pred             --eHHHHHHHHHhhccchhhhhCcHHHhCCcccCCceEECCCCcHHHHHHHHHHcCCcEEEEEc---------CCCcEEE
Confidence              99999887754321100 011111100 1234556788888888887777654332222333         5789999


Q ss_pred             EeehhhHHHHHhc
Q 013310          417 IITLEDVFEELLQ  429 (445)
Q Consensus       417 IVT~~Dile~l~g  429 (445)
                      +||..|+++.+.+
T Consensus       231 iit~~dl~~~~~~  243 (334)
T 2qrd_G          231 VYESVDVMHLIQD  243 (334)
T ss_dssp             EEETHHHHHHHTT
T ss_pred             EEEHHHHHHHhhc
Confidence            9999999998875

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.81  E-value=9.4e-20  Score=163.44  Aligned_cols=111  Identities=16%  Similarity=0.260  Sum_probs=96.1

Q ss_pred             HHHHHHHhhcCcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCC----
Q 013310          213 ETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE----  288 (445)
Q Consensus       213 E~~~l~~~~~l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~----  288 (445)
                      +++.+.+.  +++++|+|+|++  +++++++++++. ++++.|.+++++++||+|++ ++++|+|+.+|+++....    
T Consensus         7 ~~~~~~~~--l~~~~V~diM~~--~v~~v~~~~tl~-~a~~~m~~~~~~~~pVvd~~-g~lvGiit~~Dll~~~~~~~~~   80 (170)
T 4esy_A            7 RRRAIARA--IRQVPIRDILTS--PVVTVREDDTLD-AVAKTMLEHQIGCAPVVDQN-GHLVGIITESDFLRGSIPFWIY   80 (170)
T ss_dssp             HHHHHHHH--HHTSBGGGGCCS--CCCCEETTSBHH-HHHHHHHHTTCSEEEEECTT-SCEEEEEEGGGGGGGTCCTTHH
T ss_pred             HHHHHHHH--HcCCCHHHhcCC--CCcEECCcCcHH-HHHHHHHHcCCeEEEEEcCC-ccEEEEEEHHHHHHHHhhcccc
Confidence            34444443  467899999985  789999999998 99999999999999999875 899999999999875422    


Q ss_pred             ----------------------CCCccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          289 ----------------------TETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       289 ----------------------~~~~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                                            ...+++++|.++++++++++++.+|++.|.+++.+.+||+|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd  143 (170)
T 4esy_A           81 EASEILSRAIPAPEVEHLFETGRKLTASAVMTQPVVTAAPEDSVGSIADQMRRHGIHRIPVVQ  143 (170)
T ss_dssp             HHHHHHTTTSCHHHHHHHHHHHTTCBHHHHCBCCSCCBCTTSBHHHHHHHHHHTTCSEEEEEE
T ss_pred             chhhhhhhccchhhHHhhhccccccchhhhcccCcccCCcchhHHHHHHHHHHcCCcEEEEEE
Confidence                                  12478899999999999999999999999999999999998

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.80  E-value=3.6e-21  Score=190.49  Aligned_cols=212  Identities=12%  Similarity=0.190  Sum_probs=156.2

Q ss_pred             ccCCCCCHHHHHHHHHhhcCcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhh
Q 013310          204 GKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLL  283 (445)
Q Consensus       204 ~~~g~l~~~E~~~l~~~~~l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll  283 (445)
                      +++|.+++.+++.+.+.  |.+.+|+|+|+|+.++++++.++++. ++++.|.+++++++||++++.++++|+++.+|++
T Consensus        15 ~~~~~~~~~~~~~~~~~--l~~~~v~dim~p~~~v~~v~~~~~v~-~a~~~~~~~~~~~~pV~d~~~~~~vGivt~~Dll   91 (330)
T 2v8q_E           15 EHSQETPESNSSVYTTF--MKSHRCYDLIPTSSKLVVFDTSLQVK-KAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFI   91 (330)
T ss_dssp             --------CCSCHHHHH--HHHSBGGGGSCSEEEEEEEETTSBHH-HHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHH
T ss_pred             hHhhhccchhhHHHHHH--HHcCcHhhhccCCCcEEEEeCCCcHH-HHHHHHHHcCCcEEEEEeCCCCeEEEEEEHHHHH
Confidence            34577777777777777  56889999999999999999999998 9999999999999999998657899999999997


Q ss_pred             ccCCC------------CCC-------ccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEcc-CCCccCCCCCCCC
Q 013310          284 TVRPE------------TET-------PVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKA-KGKSKTLPPMTDG  343 (445)
Q Consensus       284 ~~~~~------------~~~-------~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde-~G~~~Giv~~T~~  343 (445)
                      .....            ...       +++++|.++++++++++++.++++.|.+++.+.+||+|+ +|+++|++  |.+
T Consensus        92 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~Giv--t~~  169 (330)
T 2v8q_E           92 NILHRYYKSALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYIL--THK  169 (330)
T ss_dssp             HHHHHHHHHHTTTCCCGGGCBHHHHHHHHSSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEE--CHH
T ss_pred             HHHHHHHhccccchhHHhhccHHHHHHHHhhcccCCceEeCCCCCHHHHHHHHHHCCCCeEEEEeCCCCcEEEEE--cHH
Confidence            63211            011       234667889999999999999999999999999999999 99999999  999


Q ss_pred             CcccccccCCCCCCC---C-cccccccccC-CCceEeeccCCCccccccccCCCCCCCCCccccccccCCCCCCceEEEe
Q 013310          344 KKPKLNEAKGGDCDL---T-APLLSKQDEK-TESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGII  418 (445)
Q Consensus       344 di~~~i~~~~~~~~~---~-~~~~~~~~~~-~~~~~v~~~~~i~~~~~~~~~~~~~~~~tl~g~~~~~~~~e~g~l~GIV  418 (445)
                      |+++.+.......+.   . .+........ ...+.++++.++.+..+.+........-+++         ++|+++|+|
T Consensus       170 dl~~~~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd---------~~~~l~Gii  240 (330)
T 2v8q_E          170 RILKFLKLFITEFPKPEFMSKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVD---------EKGRVVDIY  240 (330)
T ss_dssp             HHHHHHHHHSCSSSCCGGGGSBHHHHTCSBCSSCCCEETTCBHHHHHHHHHHHCCSEEEEEC---------TTSBEEEEE
T ss_pred             HHHHHHHHHhhccCchhhhcCCHHHhcccCcCCceEECCCCCHHHHHHHHHHcCCCeEEEEC---------CCCcEEEEE
Confidence            999877543222111   0 1100111111 4556788888888888777654332222233         578999999


Q ss_pred             ehhhHHHHHhc
Q 013310          419 TLEDVFEELLQ  429 (445)
Q Consensus       419 T~~Dile~l~g  429 (445)
                      |..|+++.+.+
T Consensus       241 t~~dl~~~~~~  251 (330)
T 2v8q_E          241 SKFDVINLAAE  251 (330)
T ss_dssp             EGGGTGGGGGS
T ss_pred             EHHHHHHHHhc
Confidence            99999998774

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=99.79  E-value=3.5e-21  Score=189.88  Aligned_cols=213  Identities=11%  Similarity=0.152  Sum_probs=162.9

Q ss_pred             cCCCCCHHHHHHHHHhhcC-cccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhh
Q 013310          205 KGGELTHDETTIISGALDL-TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLL  283 (445)
Q Consensus       205 ~~g~l~~~E~~~l~~~~~l-~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll  283 (445)
                      +.|.++++|+++++++++| .+.+|+|+|+|+.++++++.+.|+. ++++.|.+++++++||++++.++++|+++.+|++
T Consensus         8 ~~~~~~~~~~~~~~~i~~~l~~~~~~d~m~~~~~~v~v~~~~sv~-~a~~~m~~~~~~~~pV~d~~~~~lvGilt~~Dl~   86 (323)
T 3t4n_C            8 SQEKVSIEQQLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVK-KSLNVLLQNSIVSAPLWDSKTSRFAGLLTTTDFI   86 (323)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHSBHHHHSCSEEEEEEEETTSBHH-HHHHHHHHTTCSCEEEEETTTTEEEEEECHHHHH
T ss_pred             CCCcccHHHHHHHHHHHHHHHhCchHhhCCCCCcEEEEcCCCcHH-HHHHHHHHcCCceEEEEeCCCCeEEEEEEHHHHH
Confidence            3467788999999999999 9999999999999999999999998 9999999999999999998767999999999987


Q ss_pred             ccCC----CC----------CCccc------cccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEccCCC-----ccCCC
Q 013310          284 TVRP----ET----------ETPVS------AVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGK-----SKTLP  338 (445)
Q Consensus       284 ~~~~----~~----------~~~v~------~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~-----~~Giv  338 (445)
                      ....    ..          ...+.      ++|.++++++++++++.++++.|.+++.+.+||+|++|.     +.|++
T Consensus        87 ~~l~~~~~~~~~~~~l~~~~~~~v~~i~~~~~~~~~~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~~~l~Giv  166 (323)
T 3t4n_C           87 NVIQYYFSNPDKFELVDKLQLDGLKDIERALGVDQLDTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETHREIVVSVL  166 (323)
T ss_dssp             HHHHHHHHCGGGGGGGGGCBHHHHHHHHHHTTC----CCCBCTTSBHHHHHHHHHHHTCSEEEEEEECTTTCCEEEEEEE
T ss_pred             HHHHHHHcCcchhHHHHHHHHHHHHHHHHHhCCCCCCceEeCCCCcHHHHHHHHHhCCeeEEEEEecCCCCCccceEEEe
Confidence            6421    00          01122      344678899999999999999999999999999999987     99999


Q ss_pred             CCCCCCcccccccCCCCCCC-Ccccccc-cccCCCceEeeccCCCccccccccCCCCCCCCCccccccccCCCCCCceEE
Q 013310          339 PMTDGKKPKLNEAKGGDCDL-TAPLLSK-QDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIG  416 (445)
Q Consensus       339 ~~T~~di~~~i~~~~~~~~~-~~~~~~~-~~~~~~~~~v~~~~~i~~~~~~~~~~~~~~~~tl~g~~~~~~~~e~g~l~G  416 (445)
                        |.+|+++.+.+....... ..+.... ..+....+.++++.++.+..+.+........-+++         ++|+++|
T Consensus       167 --t~~di~~~l~~~~~~~~~~~~~v~~~~~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~pVvd---------~~~~~~G  235 (323)
T 3t4n_C          167 --TQYRILKFVALNCRETHFLKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIID---------ENGYLIN  235 (323)
T ss_dssp             --EHHHHHHHHHHHCGGGGGCCSBGGGTTCSBCTTCCCBCTTSBHHHHHHHHHHHTCSEEEEEC---------TTCBEEE
T ss_pred             --cHHHHHHHHHhcCCchhhhhCcHHHcCCCCCCCcEEECCCCcHHHHHHHHHHcCCCEEEEEC---------CCCeEEE
Confidence              999999876543322111 1111111 11234556788888888888877654333222333         5799999


Q ss_pred             EeehhhHHHHHhc
Q 013310          417 IITLEDVFEELLQ  429 (445)
Q Consensus       417 IVT~~Dile~l~g  429 (445)
                      +||..|+++.+.+
T Consensus       236 iit~~dl~~~~~~  248 (323)
T 3t4n_C          236 VYEAYDVLGLIKG  248 (323)
T ss_dssp             EEETTHHHHHHHT
T ss_pred             EEeHHHHHHHHhh
Confidence            9999999998875

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=99.79  E-value=7e-19  Score=170.64  Aligned_cols=138  Identities=14%  Similarity=0.123  Sum_probs=115.9

Q ss_pred             cccHHHHHHHHHHhhhh---hcc--CCCCCHHHHHHHHHhhcCcccccccccccCCceEEeeCCCCccHHHHHHHHHc--
Q 013310          186 LFRRAQLKALVTIHSQE---AGK--GGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILAR--  258 (445)
Q Consensus       186 ~~s~eEl~~li~~~~~e---~~~--~g~l~~~E~~~l~~~~~l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~--  258 (445)
                      .++.+++..+++...++   ..+  -|.++.+++..+.+++.+.+.+|+++|++  ++++++++.++. ++++.|.++  
T Consensus        90 ~l~~d~~~~ll~~l~~~~~~~~~~ll~~l~~~~~~~i~~~l~~~~~~v~~iM~~--~~~~v~~~~tv~-ea~~~~~~~~~  166 (278)
T 2yvy_A           90 ELSLDDLADALQAVRKEDPAYFQRLKDLLDPRTRAEVEALARYEEDEAGGLMTP--EYVAVREGMTVE-EVLRFLRRAAP  166 (278)
T ss_dssp             HSCHHHHHHHHHHHHHHCHHHHHHHHHHSCHHHHHHHHHHHHSCTTBGGGTCBS--CCCEECTTSBHH-HHHHHHHHHTT
T ss_pred             cCCHHHHHHHHHhCCCccHHHHHHHHHcCCHHHHHHHHHHHCCCcchHHhhcCC--CceEECCCCcHH-HHHHHHHHccC
Confidence            34556666666532211   000  04678899999999999999999999996  788999999998 999999987  


Q ss_pred             ---CCcEEEeEeCCCCCEEEEEEhhhhhccCCCCCCccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          259 ---GHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       259 ---~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                         +++++||++++ ++++|+|+.+|++...  .+.+++++|.+++++|++++++.++++.|++++.+.+||+|
T Consensus       167 ~~~~~~~~~Vvd~~-~~lvGivt~~dll~~~--~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd  237 (278)
T 2yvy_A          167 DAETIYYIYVVDEK-GRLKGVLSLRDLIVAD--PRTRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVD  237 (278)
T ss_dssp             TCSCSSEEEEECTT-CBEEEEEEHHHHHHSC--TTCBSTTTSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             CccceeEEEEECCC-CCEEEEEEHHHHhcCC--CCCcHHHHhCCCCeEEeCCCCHHHHHHHHHhcCCCEEEEEe
Confidence               78999999875 8999999999998753  35789999989999999999999999999999999999999

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=99.77  E-value=3e-18  Score=178.26  Aligned_cols=134  Identities=14%  Similarity=0.135  Sum_probs=119.5

Q ss_pred             cccHHHHHHHHHHhhhhhccC---------CCCCHHHHHHHHHhhcCcccccccccccCCceEEeeCCCCccHHHHHHHH
Q 013310          186 LFRRAQLKALVTIHSQEAGKG---------GELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKIL  256 (445)
Q Consensus       186 ~~s~eEl~~li~~~~~e~~~~---------g~l~~~E~~~l~~~~~l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~  256 (445)
                      .++++|+..+++..    .++         +.++.++++.+.+++++.+.+|+++|++  +++++++++++. ++++.++
T Consensus       110 ~l~~dd~~~ll~~l----~~~~~~~~~~ll~~l~~~~~~~i~~~l~~~~~~v~~iM~~--~~v~v~~~~tv~-ea~~~~~  182 (473)
T 2zy9_A          110 ELSLDDLADALQAV----RKEDPAYFQRLKDLLDPRTRAEVEALARYEEDEAGGLMTP--EYVAVREGMTVE-EVLRFLR  182 (473)
T ss_dssp             HSCHHHHHHHHHHH----HHSCHHHHHHHTTSSCHHHHHHHHHHHTSCTTBSTTTCBS--CEEEECTTCBHH-HHHHHHH
T ss_pred             hCCHHHHHHHHHhC----CHhHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCHHHhCCC--CceEeCCCCcHH-HHHHHHH
Confidence            46788888888732    234         7899999999999999999999999996  799999999998 9999999


Q ss_pred             Hc-----CCcEEEeEeCCCCCEEEEEEhhhhhccCCCCCCccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          257 AR-----GHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       257 ~~-----~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      ++     +++++||+|++ ++++|+++.+|++...  .+.+++++|.++++++++++++.++++.|++++.+.+||+|
T Consensus       183 ~~~~~~~~~~~ipVvd~~-~~lvGiVt~~Dll~~~--~~~~v~dim~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVD  257 (473)
T 2zy9_A          183 RAAPDAETIYYIYVVDEK-GRLKGVLSLRDLIVAD--PRTRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVD  257 (473)
T ss_dssp             HHGGGCSEEEEEEEECTT-SBEEEEEEHHHHHHSC--TTSBGGGTSBSSCCCEESSSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             hccCCcCceeEEEEECCC-CcEEEEEEHHHHhcCC--CCCcHHHHhCCCCeEEeCCCcHHHHHHHHHhcCCcEEEEEc
Confidence            86     47899999875 8999999999998752  35789999989999999999999999999999999999999

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.77  E-value=7.3e-20  Score=178.18  Aligned_cols=217  Identities=16%  Similarity=0.153  Sum_probs=165.3

Q ss_pred             ccccHHHHHHHHHHhhhhhccCCCCCHHHHHHHHHhhcCcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEE
Q 013310          185 ALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVP  264 (445)
Q Consensus       185 ~~~s~eEl~~li~~~~~e~~~~g~l~~~E~~~l~~~~~l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~P  264 (445)
                      -.+|.+||...+..        +.   ...+...+.+++.+.+|+++|++  +++++++++++. ++++.|.+++++++|
T Consensus        63 GivT~~Di~~~~~~--------~~---~~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~~~-~a~~~m~~~~~~~lp  128 (296)
T 3ddj_A           63 GLLTTRDLLSTVES--------YC---KDSCSQGDLYHISTTPIIDYMTP--NPVTVYNTSDEF-TAINIMVTRNFGSLP  128 (296)
T ss_dssp             EEEEHHHHHGGGTT--------CC------CCHHHHHHHHTSBGGGTSEE--SCCCEETTSCHH-HHHHHHHHHTCSEEE
T ss_pred             EEEeHHHHHHHhcc--------cc---cccccchhhHHHhcccHHHhccC--CCEEEcCCCCHH-HHHHHHHHcCCCEEE
Confidence            35788887776631        10   00334555566678899999997  678899999998 999999999999999


Q ss_pred             eEeCCCCCEEEEEEhhhhhccCCC--CCCccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEccCCCccCCCCCCC
Q 013310          265 VYSGNPKNIIGLLLVKSLLTVRPE--TETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTD  342 (445)
Q Consensus       265 V~~~~~~~ivGiv~~kDll~~~~~--~~~~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Giv~~T~  342 (445)
                      |+|++ ++++|+++.+|+++....  ...+++++|.+++.++++++++.++++.|.+++.+.+||+|++|+++|++  |.
T Consensus       129 Vvd~~-~~lvGivt~~dl~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~~~Giv--t~  205 (296)
T 3ddj_A          129 VVDIN-DKPVGIVTEREFLLLYKDLDEIFPVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIV--TV  205 (296)
T ss_dssp             EECTT-SCEEEEEEHHHHGGGGGGSCCCCBHHHHSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEE--EH
T ss_pred             EEcCC-CcEEEEEeHHHHHHhhhcccccccHHHhhcCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCEEEEEE--EH
Confidence            99865 799999999999875432  24689999989999999999999999999999999999999999999999  99


Q ss_pred             CCcccccccCCCCCC----CCcccccccccCCCceEeeccCCCccccccccCCCCCCCCCccccccccCCCCCCceEEEe
Q 013310          343 GKKPKLNEAKGGDCD----LTAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGII  418 (445)
Q Consensus       343 ~di~~~i~~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~i~~~~~~~~~~~~~~~~tl~g~~~~~~~~e~g~l~GIV  418 (445)
                      +|+++.+......-.    ...+  ....+....+.++++.++.+..+.+........-+++         ++|+++|+|
T Consensus       206 ~dl~~~~~~~~~~~~~~~~~~~~--v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd---------~~g~~~Gii  274 (296)
T 3ddj_A          206 VNAIKQLAKAVDKLDPDYFYGKV--VKDVMVTNLVTIDELASVNRAAAEMIVKRIGSLLILN---------KDNTIRGII  274 (296)
T ss_dssp             HHHHHHHHHHHHHTCTHHHHTCB--HHHHSBCCCCBCCTTSBHHHHHHHHHHHTCSEEEEEC---------TTSCEEEEE
T ss_pred             HHHHHHHHHHHhhcChhhhcCcC--HHHHhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEC---------CCCeEEEEE
Confidence            999887752111000    0011  1112223556788888888888877765443333334         689999999


Q ss_pred             ehhhHHHHHhc
Q 013310          419 TLEDVFEELLQ  429 (445)
Q Consensus       419 T~~Dile~l~g  429 (445)
                      |.+|+++++.+
T Consensus       275 t~~Dil~~l~~  285 (296)
T 3ddj_A          275 TERDLLIALHH  285 (296)
T ss_dssp             EHHHHHHHHHH
T ss_pred             cHHHHHHHHHH
Confidence            99999999986

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=99.75  E-value=6.7e-18  Score=148.58  Aligned_cols=108  Identities=19%  Similarity=0.228  Sum_probs=91.0

Q ss_pred             HHhhcCcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCC---------
Q 013310          218 SGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE---------  288 (445)
Q Consensus       218 ~~~~~l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~---------  288 (445)
                      .+...+.+.+|+++|+|+.++++++++.++. ++++.|.+++++++||++++ ++++|+++.+|+++....         
T Consensus         3 ~~~~~l~~~~v~~im~~~~~~~~v~~~~~~~-~a~~~m~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~   80 (157)
T 2emq_A            3 WEHNEFMQMTVKPFLIPADKVAHVQPGNYLD-HALLVLTKTGYSAIPVLDTS-YKLHGLISMTMMMDAILGLERIEFERL   80 (157)
T ss_dssp             -------CCBSTTTCEEGGGSCCBCTTSBHH-HHHHHHHHSSSSEEEEECTT-CCEEEEEEHHHHHHHSBCSSSBCGGGG
T ss_pred             hhHhhHhhCcHHhhccCCccceEECCCCcHH-HHHHHHHHCCceEEEEEcCC-CCEEEEeeHHHHHHHHhcccccchHHh
Confidence            4555678899999999766788999999998 99999999999999999864 789999999999876432         


Q ss_pred             CCCccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          289 TETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       289 ~~~~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      ...++.++|.++++++++++++.++++.|.+++.  +||+|
T Consensus        81 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd  119 (157)
T 2emq_A           81 ETMKVEEVMNRNIPRLRLDDSLMKAVGLIVNHPF--VCVEN  119 (157)
T ss_dssp             GTCBGGGTCBCCCCEEETTSBHHHHHHHHHHSSE--EEEEC
T ss_pred             cCCcHHHHhCCCCceecCCCcHHHHHHHHhhCCE--EEEEc
Confidence            2468999998999999999999999999999976  99998

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.74  E-value=7.2e-20  Score=176.03  Aligned_cols=218  Identities=14%  Similarity=0.163  Sum_probs=159.5

Q ss_pred             ccccHHHHHHHHHHhhhhhccCCCCCHHHHHHHHHhhcCcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEE
Q 013310          185 ALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVP  264 (445)
Q Consensus       185 ~~~s~eEl~~li~~~~~e~~~~g~l~~~E~~~l~~~~~l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~P  264 (445)
                      -.+|.+||...+...    ...+.+.   .....++++..+.+|+++|++  +++++++++++. ++++.|.+++++++|
T Consensus        50 Givt~~di~~~~~~~----~~~~~~~---~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~  119 (280)
T 3kh5_A           50 GIITSMDIVDFMGGG----SKYNLIR---EKHERNFLAAINEPVREIMEE--NVITLKENADID-EAIETFLTKNVGGAP  119 (280)
T ss_dssp             EEEEHHHHHHHTTTS----GGGHHHH---TTSTTCHHHHTTSBGGGTSBC--SCCCEETTCBHH-HHHHHHHHTTCSEEE
T ss_pred             EEEEHHHHHHHhccc----chhhhhh---hccccchhHHhhhhHHHhcCC--CCEEECCCCCHH-HHHHHHHhCCCCEEE
Confidence            357888988876411    1111111   111122333346799999986  688999999998 999999999999999


Q ss_pred             eEeCCCCCEEEEEEhhhhhccCCC---CCCccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEccCCCccCCCCCC
Q 013310          265 VYSGNPKNIIGLLLVKSLLTVRPE---TETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMT  341 (445)
Q Consensus       265 V~~~~~~~ivGiv~~kDll~~~~~---~~~~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Giv~~T  341 (445)
                      |+|++ ++++|+++.+|+++....   ...+++++|.+++.++++++++.++++.|.+++.+.+||+ ++|++.|++  |
T Consensus       120 Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv-~~~~~~Giv--t  195 (280)
T 3kh5_A          120 IVNDE-NQLISLITERDVIRALLDKIDENEVIDDYITRDVIVATPGERLKDVARTMVRNGFRRLPVV-SEGRLVGII--T  195 (280)
T ss_dssp             EECTT-CBEEEEEEHHHHHHHHGGGSCTTCBSGGGCBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEE-ETTEEEEEE--E
T ss_pred             EEcCC-CEEEEEEEHHHHHHHHhhcCCCCCCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEE-ECCEEEEEE--E
Confidence            99875 899999999999875322   2347899998999999999999999999999999999999 789999999  9


Q ss_pred             CCCcccccccCCCCCC---------CCcccccccccCCCceEeeccCCCccccccccCCCCCCCCCccccccccCCCCCC
Q 013310          342 DGKKPKLNEAKGGDCD---------LTAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDG  412 (445)
Q Consensus       342 ~~di~~~i~~~~~~~~---------~~~~~~~~~~~~~~~~~v~~~~~i~~~~~~~~~~~~~~~~tl~g~~~~~~~~e~g  412 (445)
                      .+|+++.+......+.         ...+  ...-.....+.++++.++.+..+.|........-+++         ++|
T Consensus       196 ~~dl~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd---------~~g  264 (280)
T 3kh5_A          196 STDFIKLLGSDWAFNHMQTGNVREITNVR--MEEIMKRDVITAKEGDKLKKIAEIMVTNDIGALPVVD---------ENL  264 (280)
T ss_dssp             HHHHHHHHTSHHHHHHHHSCCTHHHHHCB--HHHHSBSSCCCBCTTCBHHHHHHHHHHHTCCEEEEEC---------TTC
T ss_pred             HHHHHHHHhhhhhhhhhcccchhhhhCCc--HHHHhcCCCEEECCCCCHHHHHHHHHHCCCCEEEEEC---------CCC
Confidence            9999987753211000         0011  0111234556788888888888877765443333334         578


Q ss_pred             ceEEEeehhhHHHHH
Q 013310          413 EVIGIITLEDVFEEL  427 (445)
Q Consensus       413 ~l~GIVT~~Dile~l  427 (445)
                      +++|+||.+|+++.+
T Consensus       265 ~~~Givt~~dil~~l  279 (280)
T 3kh5_A          265 RIKGIITEKDVLKYF  279 (280)
T ss_dssp             BEEEEEEHHHHGGGG
T ss_pred             eEEEEEeHHHHHHhh
Confidence            999999999999875

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.73  E-value=1.8e-18  Score=166.27  Aligned_cols=182  Identities=13%  Similarity=0.181  Sum_probs=143.0

Q ss_pred             ccccc-cccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCC----------------
Q 013310          227 TAEEA-MTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET----------------  289 (445)
Q Consensus       227 ~V~di-Mtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~----------------  289 (445)
                      ++++. |++  +++++++++|+. ++++.|.+++++++||++++.++++|+++.+|++......                
T Consensus         4 ~v~~~i~~~--~~~~v~~~~sl~-~a~~~m~~~~~~~lpV~d~~~~~~~Givt~~di~~~~~~~~~~~~~~~~~~~~~~~   80 (280)
T 3kh5_A            4 RVMKIAQNK--KIVTVYPTTTIR-KALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGGGSKYNLIREKHERNFLA   80 (280)
T ss_dssp             BGGGTSCCS--CCCCBCTTSBHH-HHHHHHHHHCCCEEEEECTTTCBEEEEEEHHHHHHHTTTSGGGHHHHTTSTTCHHH
T ss_pred             hHHHHhcCC--CcEEECCCCcHH-HHHHHHHhCCCcEeeEEECCCCeEEEEEEHHHHHHHhcccchhhhhhhccccchhH
Confidence            45554 553  789999999998 9999999999999999986458999999999998754221                


Q ss_pred             --CCccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEccCCCccCCCCCCCCCcccccccCCCCCCCCcccccccc
Q 013310          290 --ETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQD  367 (445)
Q Consensus       290 --~~~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Giv~~T~~di~~~i~~~~~~~~~~~~~~~~~~  367 (445)
                        +.+++++|.++++++++++++.++++.|.+++.+.+||+|++|+++|++  |.+|+++.+.+....+.   +  ....
T Consensus        81 ~~~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Giv--t~~dl~~~~~~~~~~~~---~--v~~~  153 (280)
T 3kh5_A           81 AINEPVREIMEENVITLKENADIDEAIETFLTKNVGGAPIVNDENQLISLI--TERDVIRALLDKIDENE---V--IDDY  153 (280)
T ss_dssp             HTTSBGGGTSBCSCCCEETTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEE--EHHHHHHHHGGGSCTTC---B--SGGG
T ss_pred             HhhhhHHHhcCCCCEEECCCCCHHHHHHHHHhCCCCEEEEEcCCCEEEEEE--EHHHHHHHHhhcCCCCC---C--HHHH
Confidence              3578999999999999999999999999999999999999999999999  99999987765443221   1  0111


Q ss_pred             cCCCceEeeccCCCccccccccCCCCCCCCCccccccccCCCCCCceEEEeehhhHHHHHh
Q 013310          368 EKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELL  428 (445)
Q Consensus       368 ~~~~~~~v~~~~~i~~~~~~~~~~~~~~~~tl~g~~~~~~~~e~g~l~GIVT~~Dile~l~  428 (445)
                      .....+.++++.++.+..+.+.......      +++.    ++|+++|+||.+|+++.+.
T Consensus       154 m~~~~~~v~~~~~l~~~~~~~~~~~~~~------~~Vv----~~~~~~Givt~~dl~~~~~  204 (280)
T 3kh5_A          154 ITRDVIVATPGERLKDVARTMVRNGFRR------LPVV----SEGRLVGIITSTDFIKLLG  204 (280)
T ss_dssp             CBCSCCCBCTTCBHHHHHHHHHHHTCSE------EEEE----ETTEEEEEEEHHHHHHHHT
T ss_pred             hCCCCeEECCCCcHHHHHHHHHHcCCCE------EEEE----ECCEEEEEEEHHHHHHHHh
Confidence            2234566788888888777766543322      2222    3799999999999999875

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=99.73  E-value=1.6e-17  Score=144.81  Aligned_cols=104  Identities=19%  Similarity=0.173  Sum_probs=92.3

Q ss_pred             cccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCC----------------
Q 013310          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP----------------  287 (445)
Q Consensus       224 ~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~----------------  287 (445)
                      ...+|+++|+++.+++++++++++. ++++.|.+++++++||++++ ++++|+++.+|++....                
T Consensus         3 ~~~~v~~im~~~~~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~-~~~~G~vt~~dl~~~~~~~~~~~~~~~~~~~~~   80 (152)
T 4gqw_A            3 GVYTVGEFMTKKEDLHVVKPTTTVD-EALELLVENRITGFPVIDED-WKLVGLVSDYDLLALDSGDSTWKTFNAVQKLLS   80 (152)
T ss_dssp             CCSBGGGTSEESTTCCCBCTTSBHH-HHHHHHHHTTCSEEEEECTT-CBEEEEEEHHHHTTCC----CCHHHHHHHTC--
T ss_pred             ceEEhhhccCCCCCCeEECCCCcHH-HHHHHHHHcCCceEEEEeCC-CeEEEEEEHHHHHHhhcccCcccchHHHHHHHH
Confidence            4578999999877899999999998 99999999999999999875 79999999999986421                


Q ss_pred             -CCCCccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          288 -ETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       288 -~~~~~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                       ....++.++|.++++++++++++.++++.|.+++.+.+||+|
T Consensus        81 ~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd  123 (152)
T 4gqw_A           81 KTNGKLVGDLMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVD  123 (152)
T ss_dssp             ---CCBHHHHSEESCCCEESSSBHHHHHHHHHHSSCCEEEEEC
T ss_pred             HhccccHHHhcCCCceEECCCCcHHHHHHHHHHCCCCEEEEEC
Confidence             123688999988899999999999999999999999999999

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=99.73  E-value=6.6e-18  Score=147.62  Aligned_cols=104  Identities=17%  Similarity=0.203  Sum_probs=92.5

Q ss_pred             cCcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCC---------CCCc
Q 013310          222 DLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE---------TETP  292 (445)
Q Consensus       222 ~l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~---------~~~~  292 (445)
                      .|.+.+|+++|+|..+++++++++++. ++++.|.+++++++||+|++ ++++|+|+.+|+++....         ...+
T Consensus        11 ~l~~~~v~~im~~~~~~~~v~~~~~l~-~a~~~~~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~   88 (150)
T 3lqn_A           11 EFQQIFVKDLMISSEKVAHVQIGNGLE-HALLVLVKSGYSAIPVLDPM-YKLHGLISTAMILDGILGLERIEFERLEEMK   88 (150)
T ss_dssp             HHHHCBHHHHSEEGGGSCCBCTTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHTBCSSSBCGGGGGGCB
T ss_pred             hhhcCChhhcccCCCceEEECCCCcHH-HHHHHHHHcCCcEEEEECCC-CCEEEEEEHHHHHHHHHhhcccchhHHhcCC
Confidence            456789999999877889999999998 99999999999999999865 899999999999876431         2468


Q ss_pred             cccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          293 VSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       293 v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      ++++|.++++++++++++.++++.|.+++.  +||+|
T Consensus        89 v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd  123 (150)
T 3lqn_A           89 VEQVMKQDIPVLKLEDSFAKALEMTIDHPF--ICAVN  123 (150)
T ss_dssp             GGGTCBSSCCEEETTCBHHHHHHHHHHCSE--EEEEC
T ss_pred             HHHHhcCCCceeCCCCCHHHHHHHHHhCCE--EEEEC
Confidence            999999999999999999999999999876  99999

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=99.72  E-value=3.7e-17  Score=159.23  Aligned_cols=117  Identities=18%  Similarity=0.193  Sum_probs=107.2

Q ss_pred             CCCCHHHHHHHHHhhcCcccccccccccCCceEEeeCCCCccHHHHHHHHHc-----CCcEEEeEeCCCCCEEEEEEhhh
Q 013310          207 GELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILAR-----GHSRVPVYSGNPKNIIGLLLVKS  281 (445)
Q Consensus       207 g~l~~~E~~~l~~~~~l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~-----~~s~~PV~~~~~~~ivGiv~~kD  281 (445)
                      +.++.+++..+.+++.+.+.+|+++|++  +++++++++++. ++++.|.++     +++++||++++ ++++|+|+.+|
T Consensus       118 ~~l~~~e~~~i~~ll~~~~~~v~~iM~~--~~~~v~~~~tv~-ea~~~~~~~~~~~~~~~~~pVvd~~-~~lvGivt~~d  193 (286)
T 2oux_A          118 SLLSSEEAGEIKELLHYEDETAGAIMTT--EFVSIVANQTVR-SAMYVLKNQADMAETIYYVYVVDQE-NHLVGVISLRD  193 (286)
T ss_dssp             HTSCHHHHHHHHHHTTSCTTBHHHHCBS--CCCEECSSSBHH-HHHHHHHHHCSSCSCCSEEEEECTT-CBEEEEEEHHH
T ss_pred             HcCCHHHHHHHHHHhcCChHHHHHhCCC--CceEECCCCcHH-HHHHHHHHcccCccceeEEEEEcCC-CeEEEEEEHHH
Confidence            3678889999999999999999999986  688999999998 999999987     88999999875 89999999999


Q ss_pred             hhccCCCCCCccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          282 LLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       282 ll~~~~~~~~~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      ++...  ...+++++|.+++++|++++++.++++.|.+++.+.+||+|
T Consensus       194 ll~~~--~~~~v~~im~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd  239 (286)
T 2oux_A          194 LIVND--DDTLIADILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTD  239 (286)
T ss_dssp             HTTSC--TTSBHHHHSBSCCCCEETTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             HHcCC--CCCcHHHHcCCCCeeecCCCCHHHHHHHHHHcCCcEEEEEc
Confidence            98753  35789999989999999999999999999999999999999

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=99.72  E-value=1.1e-17  Score=140.82  Aligned_cols=100  Identities=11%  Similarity=0.227  Sum_probs=91.0

Q ss_pred             cccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCCCCccccccccCCceeC
Q 013310          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVP  305 (445)
Q Consensus       226 ~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~im~~~~~~V~  305 (445)
                      .+|+++|++  +++++++++++. ++++.|.+++++.+||++++ ++++|+++.+|+++....+..+++++|.+++.+++
T Consensus         1 ~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~-~~~~G~vt~~dl~~~~~~~~~~v~~~~~~~~~~v~   76 (122)
T 3kpb_A            1 TLVKDILSK--PPITAHSNISIM-EAAKILIKHNINHLPIVDEH-GKLVGIITSWDIAKALAQNKKTIEEIMTRNVITAH   76 (122)
T ss_dssp             CBHHHHCCS--CCCCEETTSBHH-HHHHHHHHHTCSCEEEECTT-SBEEEEECHHHHHHHHHTTCCBGGGTSBSSCCCEE
T ss_pred             CchHHhhCC--CCEEeCCCCcHH-HHHHHHHHcCCCeEEEECCC-CCEEEEEEHHHHHHHHHhcccCHHHHhcCCCeEEC
Confidence            378999986  578899999998 99999999999999999865 89999999999998655555689999989999999


Q ss_pred             CCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          306 SDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       306 ~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      +++++.++++.|.+++.+.+||+|
T Consensus        77 ~~~~l~~~~~~~~~~~~~~l~Vvd  100 (122)
T 3kpb_A           77 EDEPVDHVAIKMSKYNISGVPVVD  100 (122)
T ss_dssp             TTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             CCCCHHHHHHHHHHhCCCeEEEEC
Confidence            999999999999999999999999

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=99.72  E-value=4.7e-17  Score=139.97  Aligned_cols=104  Identities=13%  Similarity=0.235  Sum_probs=91.6

Q ss_pred             hcCcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc-cCCC---CCCccccc
Q 013310          221 LDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT-VRPE---TETPVSAV  296 (445)
Q Consensus       221 ~~l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~-~~~~---~~~~v~~i  296 (445)
                      +.|.+.+|+++|++  +++++++++++. ++++.|.+++++.+||++++ ++++|+++.+|+++ ....   ...++.++
T Consensus         2 ~~l~~~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~v~~~   77 (138)
T 2yzi_A            2 VMDMKAPIKVYMTK--KLLGVKPSTSVQ-EASRLMMEFDVGSLVVINDD-GNVVGFFTKSDIIRRVIVPGLPYDIPVERI   77 (138)
T ss_dssp             -CCTTSBGGGTCBC--CCCEECTTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHTTTTCCCTTSBGGGT
T ss_pred             cchhhhhHHHHhcC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEeHHHHHHHHHhcCCcccCCHHHH
Confidence            46788999999985  688999999998 99999999999999999864 79999999999973 3322   24689999


Q ss_pred             cccCCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          297 SIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       297 m~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      |.+++.++++++++.++++.|.+++.+.+ |+|
T Consensus        78 m~~~~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd  109 (138)
T 2yzi_A           78 MTRNLITANVNTPLGEVLRKMAEHRIKHI-LIE  109 (138)
T ss_dssp             CBCSCCEEETTSBHHHHHHHHHHHTCSEE-EEE
T ss_pred             hhCCCeEECCCCcHHHHHHHHHhcCCCEE-EEC
Confidence            98999999999999999999999999999 998

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=99.71  E-value=1.3e-17  Score=148.58  Aligned_cols=110  Identities=12%  Similarity=0.174  Sum_probs=97.3

Q ss_pred             HHhhcCcccccccccccC-CceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCC-----CCC
Q 013310          218 SGALDLTEKTAEEAMTPI-ESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE-----TET  291 (445)
Q Consensus       218 ~~~~~l~~~~V~diMtpr-~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~-----~~~  291 (445)
                      .....+...+|+++|+|+ .+++++++++++. ++++.|.+++++.+||++++ ++++|+|+.+|+++....     ...
T Consensus        16 ~~~~~l~~~~v~dim~~~~~~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~   93 (165)
T 3fhm_A           16 NLYFQGMATFVKDLLDRKGRDVVTVGPDVSIG-EAAGTLHAHKIGAVVVTDAD-GVVLGIFTERDLVKAVAGQGAASLQQ   93 (165)
T ss_dssp             CCCCSSSSCBHHHHHHHHCSCCCEECTTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHHHHHGGGGGTS
T ss_pred             hhhHhhhhcCHHHHhccCCCCCeEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHHHhcCCccccC
Confidence            345667889999999974 4688999999998 99999999999999999865 799999999999875321     247


Q ss_pred             ccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          292 PVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       292 ~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      +++++|.++++++++++++.++++.|.+++.+.+||+|
T Consensus        94 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd  131 (165)
T 3fhm_A           94 SVSVAMTKNVVRCQHNSTTDQLMEIMTGGRFRHVPVEE  131 (165)
T ss_dssp             BGGGTSBSSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE
T ss_pred             CHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEE
Confidence            89999999999999999999999999999999999999

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=99.71  E-value=4.3e-17  Score=138.74  Aligned_cols=101  Identities=14%  Similarity=0.194  Sum_probs=91.4

Q ss_pred             cccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCCC---CccccccccC
Q 013310          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETE---TPVSAVSIRR  300 (445)
Q Consensus       224 ~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~---~~v~~im~~~  300 (445)
                      ...+|+++|++  ++.++++++++. ++++.|.+++++.+||+++  ++++|+++.+|+++...++.   .+++++|.++
T Consensus         3 ~s~~v~~~m~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~--~~~~Givt~~dl~~~~~~~~~~~~~v~~~m~~~   77 (128)
T 3gby_A            3 ASVTFSYLAET--DYPVFTLGGSTA-DAARRLAASGCACAPVLDG--ERYLGMVHLSRLLEGRKGWPTVKEKLGEELLET   77 (128)
T ss_dssp             TTCBGGGGCBC--CSCCEETTSBHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHTTCSSSCCTTCBCCGGGCBC
T ss_pred             cceEHHHhhcC--CcceECCCCCHH-HHHHHHHHCCCcEEEEEEC--CEEEEEEEHHHHHHHHhhCCcccCcHHHHccCC
Confidence            46799999986  578899999998 9999999999999999986  79999999999998755432   5699999999


Q ss_pred             CceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          301 IPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       301 ~~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      +.++++++++.++++.|.+++.+.+||+|
T Consensus        78 ~~~v~~~~~l~~~~~~~~~~~~~~lpVvd  106 (128)
T 3gby_A           78 VRSYRPGEQLFDNLISVAAAKCSVVPLAD  106 (128)
T ss_dssp             CCCBCTTSBGGGSHHHHHHCSSSEEEEEC
T ss_pred             CcEECCCCCHHHHHHHHHhCCCcEEEEEC
Confidence            99999999999999999999999999999

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.71  E-value=6.2e-18  Score=164.50  Aligned_cols=185  Identities=20%  Similarity=0.191  Sum_probs=149.1

Q ss_pred             hcCcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCC------------
Q 013310          221 LDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE------------  288 (445)
Q Consensus       221 ~~l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~------------  288 (445)
                      .+....+|+|+|++  +++++++++++. ++++.|.+++++++||++   ++++|+++.+|+++....            
T Consensus        15 ~~~~~~~V~dim~~--~~~~v~~~~~v~-~a~~~m~~~~~~~~~V~d---~~l~GivT~~Di~~~~~~~~~~~~~~~~~~   88 (296)
T 3ddj_A           15 LYFQGMNIETLMIK--NPPILSKEDRLG-SAFKKINEGGIGRIIVAN---EKIEGLLTTRDLLSTVESYCKDSCSQGDLY   88 (296)
T ss_dssp             CTTCCSSGGGTCEE--SCCEECTTSBHH-HHHHHTTGGGCCEEEEES---SSEEEEEEHHHHHGGGTTCC---CCHHHHH
T ss_pred             hhhcccCHHHhccC--CCcEECCCccHH-HHHHHHHHCCCceEEEEC---CeEEEEEeHHHHHHHhcccccccccchhhH
Confidence            34567899999986  688999999998 999999999999999997   789999999999986531            


Q ss_pred             --CCCccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEccCCCccCCCCCCCCCcccccccCCCCCCCCccccccc
Q 013310          289 --TETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQ  366 (445)
Q Consensus       289 --~~~~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Giv~~T~~di~~~i~~~~~~~~~~~~~~~~~  366 (445)
                        .+.+++++|.++++++++++++.++++.|.+++.+.+||+|+.|+++|++  |.+|+++.+.......    +..  .
T Consensus        89 ~~~~~~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~~lvGiv--t~~dl~~~~~~~~~~~----~v~--~  160 (296)
T 3ddj_A           89 HISTTPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIV--TEREFLLLYKDLDEIF----PVK--V  160 (296)
T ss_dssp             HHHTSBGGGTSEESCCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEEE--EHHHHGGGGGGSCCCC----BHH--H
T ss_pred             HHhcccHHHhccCCCEEEcCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEE--eHHHHHHhhhcccccc----cHH--H
Confidence              13679999999999999999999999999999999999999999999999  9999998765433221    111  1


Q ss_pred             ccCCCceEeeccCCCccccccccCCCCCCCCCccccccccCCCCCCceEEEeehhhHHHHHh
Q 013310          367 DEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELL  428 (445)
Q Consensus       367 ~~~~~~~~v~~~~~i~~~~~~~~~~~~~~~~tl~g~~~~~~~~e~g~l~GIVT~~Dile~l~  428 (445)
                      -+......++++.++.+..+.+........-+++         ++|+++|+||.+|+++.+.
T Consensus       161 ~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd---------~~~~~~Givt~~dl~~~~~  213 (296)
T 3ddj_A          161 FMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVID---------DDNKVVGIVTVVNAIKQLA  213 (296)
T ss_dssp             HSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEEC---------TTSCEEEEEEHHHHHHHHH
T ss_pred             hhcCCCeEECCCCCHHHHHHHHHHcCCCEEEEEc---------CCCEEEEEEEHHHHHHHHH
Confidence            1123456788888888887777654433333334         6899999999999999876

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.70  E-value=4.5e-18  Score=163.88  Aligned_cols=178  Identities=17%  Similarity=0.201  Sum_probs=124.3

Q ss_pred             cccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCCCCccccccccCCceeC
Q 013310          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVP  305 (445)
Q Consensus       226 ~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~im~~~~~~V~  305 (445)
                      ++|+++|++  +++++++++++. ++++.|.+++++++||++++ ++++|+++.+|++....  +.+++++|.+++++++
T Consensus         1 m~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~pV~d~~-~~~~Giv~~~dl~~~~~--~~~v~~~m~~~~~~v~   74 (282)
T 2yzq_A            1 MRVKTIMTQ--NPVTITLPATRN-YALELFKKYKVRSFPVVNKE-GKLVGIISVKRILVNPD--EEQLAMLVKRDVPVVK   74 (282)
T ss_dssp             CBHHHHSEE--SCCCEESSCC-------------CCEEEEECTT-CCEEEEEESSCC------------CCCBSCCCEEE
T ss_pred             CchHHhccC--CCeEECCCCcHH-HHHHHHHHcCCCeEEEEcCC-CcEEEEEEHHHHHhhhc--cCCHHHHcCCCCcEEC
Confidence            368999985  688899999999 99999999999999999864 89999999999987543  4678999888889999


Q ss_pred             CCCCHHHHHHHHhhCCCeEEEEEccCCCccCCCCCCCCCccc-ccccCCCCCCCCcccccccccCCCceEeeccCCCccc
Q 013310          306 SDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPK-LNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPLSSG  384 (445)
Q Consensus       306 ~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Giv~~T~~di~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~~~  384 (445)
                      +++++.++++.|.+++.+.+||+|++|++.|++  |.+|+++ .+.+....  ...+.  ..-+....+.++++.++.+.
T Consensus        75 ~~~~l~~a~~~m~~~~~~~~~Vvd~~~~~~Gii--t~~di~~~~~~~~~~~--~~~~v--~~~m~~~~~~v~~~~~l~~~  148 (282)
T 2yzq_A           75 ENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGIL--TVGDIIRRYFAKSEKY--KGVEI--EPYYQRYVSIVWEGTPLKAA  148 (282)
T ss_dssp             TTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEE--EHHHHHHHTTTTCSGG--GGCBS--TTTSBSCCCCEETTSBHHHH
T ss_pred             CCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEE--EHHHHHHHHHhccCCc--ccCcH--HHHhCCCCEEECCCCCHHHH
Confidence            999999999999999999999999999999999  9999998 66543110  01111  11223456788999999888


Q ss_pred             cccccCCCCCCCCCccccccccCCCCCCceEEEeehhhHH
Q 013310          385 SMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVF  424 (445)
Q Consensus       385 ~~~~~~~~~~~~~tl~g~~~~~~~~e~g~l~GIVT~~Dil  424 (445)
                      .+.+........-+++         ++|+++|+||..|++
T Consensus       149 ~~~~~~~~~~~l~Vvd---------~~~~~~Giit~~dl~  179 (282)
T 2yzq_A          149 LKALLLSNSMALPVVD---------SEGNLVGIVDETDLL  179 (282)
T ss_dssp             HHHHHTCSSSEEEEEC---------TTSCEEEEEEGGGGG
T ss_pred             HHHHHHcCCcEEEEEc---------CCCeEEEEEEHHHHh
Confidence            8877755432222223         578999999999999

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=99.70  E-value=3.9e-17  Score=146.66  Aligned_cols=103  Identities=17%  Similarity=0.198  Sum_probs=91.7

Q ss_pred             ccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccC------------------
Q 013310          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR------------------  286 (445)
Q Consensus       225 ~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~------------------  286 (445)
                      ..+|+++|+|+.+++++++++++. ++++.|.+++++++||++++ ++++|+|+.+|+++..                  
T Consensus         3 ~~~v~dim~~~~~~~~v~~~~~l~-~a~~~m~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~   80 (180)
T 3sl7_A            3 GYTVGDFMTPRQNLHVVKPSTSVD-DALELLVEKKVTGLPVIDDN-WTLVGVVSDYDLLALDSISGRSQNDTNLFPDVDS   80 (180)
T ss_dssp             CCBHHHHSEEGGGCCCBCTTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHTCC-------------------
T ss_pred             ceeHHHhcCCCCCceeeCCCCcHH-HHHHHHHHcCCCeEEEECCC-CeEEEEEEHHHHHhhhhhccccCCcccccccccc
Confidence            368999999877899999999998 99999999999999999875 7999999999998531                  


Q ss_pred             -------------CCCCCccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          287 -------------PETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       287 -------------~~~~~~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                                   .....+++++|.++++++++++++.++++.|.+++.+.+||+|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd  136 (180)
T 3sl7_A           81 TWKTFNELQKLISKTYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVD  136 (180)
T ss_dssp             CCCSHHHHHHHHHTTTTCBHHHHSEESCCCEETTSBHHHHHHHHTTSTTCEEEEEC
T ss_pred             hhhhhHHHHHHHhccccccHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCEEEEEC
Confidence                         1124678999988899999999999999999999999999999

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=99.69  E-value=7.6e-17  Score=137.78  Aligned_cols=102  Identities=16%  Similarity=0.236  Sum_probs=91.0

Q ss_pred             CcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCC---CCCcccccccc
Q 013310          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE---TETPVSAVSIR  299 (445)
Q Consensus       223 l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~---~~~~v~~im~~  299 (445)
                      |++.+|+++|++  +++++++++++. ++++.|.+++++++||++ + ++++|+++.+|+++....   ...+++++|.+
T Consensus         1 l~~~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd-~-~~~~Givt~~dl~~~~~~~~~~~~~v~~~~~~   75 (133)
T 2ef7_A            1 MEEEIVKEYMKT--QVISVTKDAKLN-DIAKVMTEKNIGSVIVVD-G-NKPVGIITERDIVKAIGKGKSLETKAEEFMTA   75 (133)
T ss_dssp             CCCCBGGGTSBC--SCCEEETTCBHH-HHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHHHHTTCCTTCBGGGTSEE
T ss_pred             CCcccHHHhccC--CCEEECCCCcHH-HHHHHHHhcCCCEEEEEE-C-CEEEEEEcHHHHHHHHhcCCCcccCHHHHcCC
Confidence            467899999986  578899999998 999999999999999999 4 799999999999865322   24689999888


Q ss_pred             CCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          300 RIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       300 ~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      ++.++++++++.++++.|.+++.+.+||+|
T Consensus        76 ~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd  105 (133)
T 2ef7_A           76 SLITIREDSPITGALALMRQFNIRHLPVVD  105 (133)
T ss_dssp             CCCCEETTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEC
Confidence            999999999999999999999999999999

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=99.69  E-value=1.7e-17  Score=145.13  Aligned_cols=102  Identities=18%  Similarity=0.191  Sum_probs=92.5

Q ss_pred             cccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCC----CCCccccccccCC
Q 013310          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE----TETPVSAVSIRRI  301 (445)
Q Consensus       226 ~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~----~~~~v~~im~~~~  301 (445)
                      .+|+++|+++.+++++++++++. ++++.|.+++++.+||++++ ++++|+|+.+|+++....    ...+++++|.+++
T Consensus        28 ~~v~dim~~~~~~~~v~~~~~~~-~a~~~m~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~v~~~m~~~~  105 (149)
T 3k2v_A           28 LRVNDIMHTGDEIPHVGLQATLR-DALLEITRKNLGMTAICDDD-MNIIGIFTDGDLRRVFDTGVDMRDASIADVMTRGG  105 (149)
T ss_dssp             SBGGGTSBCGGGSCEECTTCBHH-HHHHHHHHHTSSEEEEECTT-CBEEEEEEHHHHHHHHCSSSCCTTCBHHHHSEESC
T ss_pred             cCHHHHhcCCCCCeEECCCCcHH-HHHHHHHhCCCcEEEEECCC-CcEEEEecHHHHHHHHhcCCCcccCcHHHHcCCCC
Confidence            58999999866889999999998 99999999999999999865 799999999999875432    3468899998999


Q ss_pred             ceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          302 PRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       302 ~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      .++++++++.++++.|.+++.+.+||+|
T Consensus       106 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd  133 (149)
T 3k2v_A          106 IRIRPGTLAVDALNLMQSRHITCVLVAD  133 (149)
T ss_dssp             CEECTTCBHHHHHHHHHHHTCSEEEEEE
T ss_pred             eEECCCCCHHHHHHHHHHcCCCEEEEec
Confidence            9999999999999999999999999999

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=99.68  E-value=1.5e-16  Score=136.58  Aligned_cols=103  Identities=17%  Similarity=0.318  Sum_probs=90.9

Q ss_pred             CcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhh-hccCCC---CCCccccccc
Q 013310          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSL-LTVRPE---TETPVSAVSI  298 (445)
Q Consensus       223 l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDl-l~~~~~---~~~~v~~im~  298 (445)
                      |.+.+|+++|++  ++.++++++++. ++++.|.+++++++||++++ ++++|+++.+|+ ++....   ...+++++|.
T Consensus         5 l~~~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~v~~~m~   80 (138)
T 2p9m_A            5 LKNIKVKDVMTK--NVITAKRHEGVV-EAFEKMLKYKISSLPVIDDE-NKVIGIVTTTDIGYNLIRDKYTLETTIGDVMT   80 (138)
T ss_dssp             CTTCBGGGTSBC--SCCCEETTSBHH-HHHHHHHHHTCCEEEEECTT-CBEEEEEEHHHHHHHHTTTCCCSSCBHHHHSC
T ss_pred             cccCCHHHhhcC--CceEECCCCcHH-HHHHHHHHCCCcEEEEECCC-CeEEEEEEHHHHHHHHHhhcccCCcCHHHHhC
Confidence            567899999985  678899999998 99999999999999999865 799999999999 765432   2468899998


Q ss_pred             cCCceeCCCCCHHHHHHHHhhCC-----CeEEEEEc
Q 013310          299 RRIPRVPSDMPLYDILNEFQKGS-----SHMAAVVK  329 (445)
Q Consensus       299 ~~~~~V~~~~~l~~al~~m~~~~-----~~~a~Vvd  329 (445)
                      +++.++++++++.++++.|.+++     .+.+||+|
T Consensus        81 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd  116 (138)
T 2p9m_A           81 KDVITIHEDASILEAIKKMDISGKKEEIINQLPVVD  116 (138)
T ss_dssp             SSCCCEETTSBHHHHHHHHTCC-----CCCEEEEEC
T ss_pred             CCcEEECCCCCHHHHHHHHHhcCCccccccEEEEEC
Confidence            89999999999999999999999     99999999

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=99.68  E-value=6.1e-17  Score=143.09  Aligned_cols=104  Identities=18%  Similarity=0.260  Sum_probs=91.5

Q ss_pred             cCcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCC---------CCCc
Q 013310          222 DLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE---------TETP  292 (445)
Q Consensus       222 ~l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~---------~~~~  292 (445)
                      .+.+.+|+++|+++.+++++++++++. ++++.|.+++++++||+|++ ++++|+++.+|++.....         ...+
T Consensus        10 ~l~~~~v~~im~~~~~~~~v~~~~~l~-~a~~~m~~~~~~~~pVvd~~-~~lvGivt~~dl~~~~~~~~~~~~~~~~~~~   87 (159)
T 1yav_A           10 QLLEATVGQFMIEADKVAHVQVGNNLE-HALLVLTKTGYTAIPVLDPS-YRLHGLIGTNMIMNSIFGLERIEFEKLDQIT   87 (159)
T ss_dssp             -CTTCBHHHHSEEGGGSCCEETTCBHH-HHHHHHHHHCCSEEEEECTT-CBEEEEEEHHHHHHHHBCSSSBCGGGTTTSB
T ss_pred             HHhHhhHHHHhCCccceEEECCCCcHH-HHHHHHHhCCCcEEEEECCC-CCEEEEeEHHHHHHHhhhhcccchhhhccCC
Confidence            567789999999866788999999998 99999999999999999865 799999999999875322         2468


Q ss_pred             cccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          293 VSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       293 v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      +.++|.+++.++++++++.++++.|.+++.  +||+|
T Consensus        88 v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~--lpVvd  122 (159)
T 1yav_A           88 VEEVMLTDIPRLHINDPIMKGFGMVINNGF--VCVEN  122 (159)
T ss_dssp             HHHHSBCSCCEEETTSBHHHHHHHTTTCSE--EEEEC
T ss_pred             HHHhcCCCCceEcCCCCHHHHHHHHHhCCE--EEEEe
Confidence            899998899999999999999999998876  99999

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=99.68  E-value=1e-16  Score=137.40  Aligned_cols=100  Identities=14%  Similarity=0.186  Sum_probs=89.6

Q ss_pred             ccccccccC-CceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc-cCC----CCCCccccccccC
Q 013310          227 TAEEAMTPI-ESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT-VRP----ETETPVSAVSIRR  300 (445)
Q Consensus       227 ~V~diMtpr-~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~-~~~----~~~~~v~~im~~~  300 (445)
                      +|+++|+|+ ++++++++++++. ++++.|.+++++++||++ + ++++|+++.+|+++ ...    ....++.++|.++
T Consensus         7 ~v~~im~~~~~~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd-~-~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~~   83 (135)
T 2rc3_A            7 TVKHLLQEKGHTVVAIGPDDSVF-NAMQKMAADNIGALLVMK-D-EKLVGILTERDFSRKSYLLDKPVKDTQVKEIMTRQ   83 (135)
T ss_dssp             BHHHHHHHHCCCCCEECTTSBHH-HHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHHGGGSSSCGGGSBGGGTSBCS
T ss_pred             eHHHHHhcCCCCcEEECCCCcHH-HHHHHHHhcCCCEEEEEE-C-CEEEEEEehHHHHHHHHHcCCCcccCCHHHhccCC
Confidence            899999965 6789999999998 999999999999999998 3 79999999999985 221    1347899999899


Q ss_pred             CceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          301 IPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       301 ~~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      +.++++++++.++++.|.+++.+.+||+|
T Consensus        84 ~~~v~~~~~l~~~~~~m~~~~~~~lpVvd  112 (135)
T 2rc3_A           84 VAYVDLNNTNEDCMALITEMRVRHLPVLD  112 (135)
T ss_dssp             CCCBCTTCBHHHHHHHHHHHTCSEEEEEE
T ss_pred             CeEECCCCcHHHHHHHHHHhCCCEEEEEe
Confidence            99999999999999999999999999998

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=99.68  E-value=9.4e-17  Score=138.85  Aligned_cols=99  Identities=11%  Similarity=0.186  Sum_probs=89.0

Q ss_pred             cccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCC--CEEEEEEhhhhhccCCC---CCCccccccccC
Q 013310          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPK--NIIGLLLVKSLLTVRPE---TETPVSAVSIRR  300 (445)
Q Consensus       226 ~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~--~ivGiv~~kDll~~~~~---~~~~v~~im~~~  300 (445)
                      .+|+++|++  +++++++++++. ++++.|.+++++++||++++ +  +++|+++.+|+++....   .+.+++++|.++
T Consensus         5 ~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~-~~~~~~Givt~~dl~~~~~~~~~~~~~v~~~m~~~   80 (141)
T 2rih_A            5 IRTSELLKR--PPVSLPETATIR-EVATELAKNRVGLAVLTARD-NPKRPVAVVSERDILRAVAQRLDLDGPAMPIANSP   80 (141)
T ss_dssp             CBGGGGCCS--CCEEEETTCBHH-HHHHHHHHHTCSEEEEEETT-EEEEEEEEEEHHHHHHHHHTTCCTTSBSGGGCBCC
T ss_pred             eEHHHHhcC--CCeEeCCCCcHH-HHHHHHHHcCCCEEEEEcCC-CcceeEEEEEHHHHHHHHhcCCCCCCCHHHHcCCC
Confidence            689999985  688999999998 99999999999999999874 5  89999999999875322   246899999899


Q ss_pred             CceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          301 IPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       301 ~~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      +++++++ ++.++++.|.+++.+.+||+|
T Consensus        81 ~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd  108 (141)
T 2rih_A           81 ITVLDTD-PVHVAAEKMRRHNIRHVVVVN  108 (141)
T ss_dssp             CEEETTS-BHHHHHHHHHHHTCSEEEEEC
T ss_pred             CeEEcCC-CHHHHHHHHHHcCCeEEEEEc
Confidence            9999999 999999999999999999999

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=99.68  E-value=1.3e-17  Score=164.22  Aligned_cols=186  Identities=15%  Similarity=0.176  Sum_probs=143.4

Q ss_pred             cccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCC-----EEEEEEhhhhhccCC-------CCCCcccc
Q 013310          228 AEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKN-----IIGLLLVKSLLTVRP-------ETETPVSA  295 (445)
Q Consensus       228 V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~-----ivGiv~~kDll~~~~-------~~~~~v~~  295 (445)
                      +.++|++  +++++++++++. ++++.|.+++++++||++++ +.     ++|+++.+|+++...       ....++++
T Consensus       116 ~~~~~~~--~~v~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-~~~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~v~~  191 (323)
T 3t4n_C          116 ALGVDQL--DTASIHPSRPLF-EACLKMLESRSGRIPLIDQD-EETHREIVVSVLTQYRILKFVALNCRETHFLKIPIGD  191 (323)
T ss_dssp             HTTC------CCCBCTTSBHH-HHHHHHHHHTCSEEEEEEEC-TTTCCEEEEEEEEHHHHHHHHHHHCGGGGGCCSBGGG
T ss_pred             HhCCCCC--CceEeCCCCcHH-HHHHHHHhCCeeEEEEEecC-CCCCccceEEEecHHHHHHHHHhcCCchhhhhCcHHH
Confidence            4455553  688999999998 99999999999999999865 33     999999999986421       12357888


Q ss_pred             c---cccCCceeCCCCCHHHHHHHHhhCCCeEEEEEccCCCccCCCCCCCCCcccccccCCCCCCCCcccccccccC---
Q 013310          296 V---SIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEK---  369 (445)
Q Consensus       296 i---m~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Giv~~T~~di~~~i~~~~~~~~~~~~~~~~~~~~---  369 (445)
                      +   |.++++++++++++.++++.|.+++.+.+||+|++|+++|+|  |.+|+++.+.+..... ...+........   
T Consensus       192 ~~~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Gii--t~~dl~~~~~~~~~~~-~~~~v~~~m~~~~~~  268 (323)
T 3t4n_C          192 LNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVY--EAYDVLGLIKGGIYND-LSLSVGEALMRRSDD  268 (323)
T ss_dssp             TTCSBCTTCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEE--ETTHHHHHHHTTHHHH-TTSBHHHHGGGSCTT
T ss_pred             cCCCCCCCcEEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEE--eHHHHHHHHhhchhhh-ccCCHHHHHhhcccc
Confidence            8   888999999999999999999999999999999999999999  9999998776433111 111211111111   


Q ss_pred             -CCceEeeccCCCccccccccCCCCCCCCCccccccccCCCCCCceEEEeehhhHHHHHhc
Q 013310          370 -TESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELLQ  429 (445)
Q Consensus       370 -~~~~~v~~~~~i~~~~~~~~~~~~~~~~tl~g~~~~~~~~e~g~l~GIVT~~Dile~l~g  429 (445)
                       ...+.++++.++.+..+.+........-+++         ++|+++|+||.+|+++.+++
T Consensus       269 ~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd---------~~~~l~Giit~~Dil~~l~~  320 (323)
T 3t4n_C          269 FEGVYTCTKNDKLSTIMDNIRKARVHRFFVVD---------DVGRLVGVLTLSDILKYILL  320 (323)
T ss_dssp             CCCCEEECTTCBHHHHHHHHHHSCCCEEEEEC---------TTSBEEEEEEHHHHHHHHHH
T ss_pred             CCCCEEECCCCCHHHHHHHHHHhCCCEEEEEC---------CCCcEEEEEEHHHHHHHHHh
Confidence             1567899999999988888765544433444         68999999999999999997

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=99.68  E-value=1.4e-16  Score=140.29  Aligned_cols=101  Identities=11%  Similarity=0.156  Sum_probs=90.4

Q ss_pred             cccccccccC----CceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCC-----CCCccccc
Q 013310          226 KTAEEAMTPI----ESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE-----TETPVSAV  296 (445)
Q Consensus       226 ~~V~diMtpr----~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~-----~~~~v~~i  296 (445)
                      .+|+|+|+|+    ++++++++++++. ++++.|.+++++++||.+  .++++|+++.+|+++....     ...+++++
T Consensus         7 ~~v~dim~~~~~~~~~~~~v~~~~~~~-~a~~~~~~~~~~~~~V~~--~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~   83 (157)
T 4fry_A            7 TTVAQILKAKPDSGRTIYTVTKNDFVY-DAIKLMAEKGIGALLVVD--GDDIAGIVTERDYARKVVLQERSSKATRVEEI   83 (157)
T ss_dssp             CBHHHHHHHSTTTTCCCCEEETTSBHH-HHHHHHHHHTCSEEEEES--SSSEEEEEEHHHHHHHSGGGTCCSSSCBHHHH
T ss_pred             HHHHHHHhcccccCCCCeEECCCCcHH-HHHHHHHHcCCCEEEEee--CCEEEEEEEHHHHHHHHHhccCCccccCHHHH
Confidence            5799999986    6788999999998 999999999999999964  3799999999999875422     34789999


Q ss_pred             cccCCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          297 SIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       297 m~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      |.+++.++++++++.++++.|.+++.+.+||+|
T Consensus        84 m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd  116 (157)
T 4fry_A           84 MTAKVRYVEPSQSTDECMALMTEHRMRHLPVLD  116 (157)
T ss_dssp             SBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEE
T ss_pred             cCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEE
Confidence            989999999999999999999999999999998

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.67  E-value=4.7e-17  Score=156.75  Aligned_cols=190  Identities=16%  Similarity=0.171  Sum_probs=138.1

Q ss_pred             ccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhc-cCCCC----CCcccccccc
Q 013310          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT-VRPET----ETPVSAVSIR  299 (445)
Q Consensus       225 ~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~-~~~~~----~~~v~~im~~  299 (445)
                      +.+++++|.+  ++.++++++++. ++++.|.+++.+++||++++ ++++|+++.+|+++ ....+    ..+++++|.+
T Consensus        59 ~~~v~~~m~~--~~~~v~~~~~l~-~a~~~m~~~~~~~~~Vvd~~-~~~~Giit~~di~~~~~~~~~~~~~~~v~~~m~~  134 (282)
T 2yzq_A           59 EEQLAMLVKR--DVPVVKENDTLK-KAAKLMLEYDYRRVVVVDSK-GKPVGILTVGDIIRRYFAKSEKYKGVEIEPYYQR  134 (282)
T ss_dssp             -----CCCBS--CCCEEETTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHTTTTCSGGGGCBSTTTSBS
T ss_pred             cCCHHHHcCC--CCcEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHHHHhccCCcccCcHHHHhCC
Confidence            5789999986  477899999998 99999999999999999875 78999999999998 65432    4678899988


Q ss_pred             CCceeCCCCCHHHHHHHHhhCCCeEEEEEccCCCccCCCCCCCCCcc------cccc------cC-------CCCCCCCc
Q 013310          300 RIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKP------KLNE------AK-------GGDCDLTA  360 (445)
Q Consensus       300 ~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Giv~~T~~di~------~~i~------~~-------~~~~~~~~  360 (445)
                      +++++++++++.++++.|.+++.+.+||+|++|.+.|++  |.+|++      +.+.      ..       .....+..
T Consensus       135 ~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~~Gii--t~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (282)
T 2yzq_A          135 YVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIV--DETDLLRDSEIVRIMKSTELAASSEEEWILESHPTLLFE  212 (282)
T ss_dssp             CCCCEETTSBHHHHHHHHHTCSSSEEEEECTTSCEEEEE--EGGGGGGCGGGCC--------------------------
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEE--EHHHHhhhhhhhhhhccchhhhhhhhhhhcccchHHHHh
Confidence            999999999999999999999999999999999999999  999998      3331      00       00000000


Q ss_pred             ------ccc-cccccCCCceEeeccCCCccccccccCCCCCCCCCccccccccCCCCCCceEEEeehhhHHHHHhc
Q 013310          361 ------PLL-SKQDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELLQ  429 (445)
Q Consensus       361 ------~~~-~~~~~~~~~~~v~~~~~i~~~~~~~~~~~~~~~~tl~g~~~~~~~~e~g~l~GIVT~~Dile~l~g  429 (445)
                            ... ...-+......++++.++.+..+.|........-+++         ++|+++|+||..|+++.+..
T Consensus       213 ~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd---------~~~~lvGiit~~Dil~~~~~  279 (282)
T 2yzq_A          213 KFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIR---------GEGDLIGLIRDFDLLKVLVK  279 (282)
T ss_dssp             ------CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEE---------TTTEEEEEEEHHHHGGGGCC
T ss_pred             HhhhhhccCCHHHhcCCCCceeCCCCCHHHHHHHHHHcCcceeEEEC---------CCCCEEEEEeHHHHHHHHHh
Confidence                  000 1112233456678888888877776554333222233         45799999999999998763

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=99.66  E-value=2.7e-16  Score=139.15  Aligned_cols=102  Identities=18%  Similarity=0.218  Sum_probs=90.4

Q ss_pred             CcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCC----CCCCccccccc
Q 013310          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP----ETETPVSAVSI  298 (445)
Q Consensus       223 l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~----~~~~~v~~im~  298 (445)
                      +.+.+|+++|++   .+++++++++. ++++.|.+++++++||++++ ++++|+|+.+|+++...    ....+++++|.
T Consensus        14 l~~~~v~~im~~---~~~v~~~~~~~-~a~~~m~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~v~~~m~   88 (159)
T 3fv6_A           14 LKKLQVKDFQSI---PVVIHENVSVY-DAICTMFLEDVGTLFVVDRD-AVLVGVLSRKDLLRASIGQQELTSVPVHIIMT   88 (159)
T ss_dssp             HTTCBGGGSCBC---CCEEETTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHHTSCSCTTTCBGGGTSE
T ss_pred             HhhCCHHHHcCC---CEEECCCCcHH-HHHHHHHHCCCCEEEEEcCC-CcEEEEEeHHHHHHHhhccCcccCcCHHHHHc
Confidence            466899999985   34899999998 99999999999999999865 79999999999987531    13468999988


Q ss_pred             c--CCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          299 R--RIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       299 ~--~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      +  +++++++++++.++++.|.+++.+.+||+|
T Consensus        89 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd  121 (159)
T 3fv6_A           89 RMPNITVCRREDYVMDIAKHLIEKQIDALPVIK  121 (159)
T ss_dssp             ETTSCCCBCTTSBHHHHHHHHHHHTCSEEEEEE
T ss_pred             CCCCcEEECCCCCHHHHHHHHHHcCCcEEEEEe
Confidence            7  889999999999999999999999999999

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.65  E-value=3.9e-16  Score=137.63  Aligned_cols=102  Identities=21%  Similarity=0.272  Sum_probs=90.3

Q ss_pred             cCcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcE-EEeEeCCCCCEEEEEEhhhhhccC--------------
Q 013310          222 DLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSR-VPVYSGNPKNIIGLLLVKSLLTVR--------------  286 (445)
Q Consensus       222 ~l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~-~PV~~~~~~~ivGiv~~kDll~~~--------------  286 (445)
                      .+...+|+++|++  +++++++++++. ++++.|.++++++ +||+|++  +++|+|+.+|+++..              
T Consensus        12 ~~~~~~v~~im~~--~~~~v~~~~tl~-ea~~~m~~~~~~~~~~Vvd~~--~~vGivt~~dl~~~~~~~~~~~~~~~~~~   86 (157)
T 1o50_A           12 HMKVKDVCKLISL--KPTVVEEDTPIE-EIVDRILEDPVTRTVYVARDN--KLVGMIPVMHLLKVSGFHFFGFIPKEELI   86 (157)
T ss_dssp             TCBHHHHTTSSCC--CCEEECTTCBHH-HHHHHHHHSTTCCEEEEEETT--EEEEEEEHHHHHHHHHHHHHCCCC-----
T ss_pred             hhccccHhhcccC--CCceECCCCCHH-HHHHHHHhCCCCccEEEEECC--EEEEEEEHHHHHHHHhhhHHhhhccHHHH
Confidence            3567789999986  688999999998 9999999999999 9999874  899999999998641              


Q ss_pred             -----CCCCCccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          287 -----PETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       287 -----~~~~~~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                           .....+++++|.+ ++++++++++.++++.|.+++.+.+||+|
T Consensus        87 ~~~~~~~~~~~v~~im~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd  133 (157)
T 1o50_A           87 RSSMKRLIAKNASEIMLD-PVYVHMDTPLEEALKLMIDNNIQEMPVVD  133 (157)
T ss_dssp             --CCCCCSSCBHHHHCBC-CCCBCTTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             HHHHHHHcCCcHHHHcCC-CeEECCCCCHHHHHHHHHHCCCcEEEEEc
Confidence                 1234678999888 89999999999999999999999999999

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=99.64  E-value=2.2e-16  Score=134.88  Aligned_cols=102  Identities=14%  Similarity=0.226  Sum_probs=89.0

Q ss_pred             cccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhh-ccCCC----CCCccccccc
Q 013310          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLL-TVRPE----TETPVSAVSI  298 (445)
Q Consensus       224 ~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll-~~~~~----~~~~v~~im~  298 (445)
                      .-.+|+++|++  +++++++++++. ++++.|.+++++++||+|++ ++++|+++.+|++ +....    ...+++++|.
T Consensus         6 ~~~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~   81 (133)
T 1y5h_A            6 TMTTARDIMNA--GVTCVGEHETLT-AAAQYMREHDIGALPICGDD-DRLHGMLTDRDIVIKGLAAGLDPNTATAGELAR   81 (133)
T ss_dssp             --CCHHHHSEE--TCCCEETTSBHH-HHHHHHHHHTCSEEEEECGG-GBEEEEEEHHHHHHTTGGGTCCTTTSBHHHHHT
T ss_pred             hhcCHHHHhcC--CceEeCCCCCHH-HHHHHHHHhCCCeEEEECCC-CeEEEEEeHHHHHHHHHhcCCCccccCHHHHhc
Confidence            44689999985  678899999998 99999999999999999764 7999999999998 34322    2467899998


Q ss_pred             cCCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          299 RRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       299 ~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      ++++++++++++.++++.|.+++.+.+||+|
T Consensus        82 ~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd  112 (133)
T 1y5h_A           82 DSIYYVDANASIQEMLNVMEEHQVRRVPVIS  112 (133)
T ss_dssp             TCCCCEETTCCHHHHHHHHHHHTCSEEEEEE
T ss_pred             CCCEEECCCCCHHHHHHHHHHcCCCEEEEEE
Confidence            9999999999999999999999999999999

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=99.64  E-value=3.2e-16  Score=132.15  Aligned_cols=99  Identities=14%  Similarity=0.205  Sum_probs=88.0

Q ss_pred             cccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCC----CCCccccccccCC
Q 013310          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE----TETPVSAVSIRRI  301 (445)
Q Consensus       226 ~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~----~~~~v~~im~~~~  301 (445)
                      ++|+++|++  ++.++++++++. ++++.|.+++++++||++ + ++++|+++.+|+++...+    ...++.++|.+++
T Consensus         1 m~v~~~m~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd-~-~~~~G~it~~dl~~~~~~~~~~~~~~v~~~m~~~~   75 (125)
T 1pbj_A            1 MRVEDVMVT--DVDTIDITASLE-DVLRNYVENAKGSSVVVK-E-GVRVGIVTTWDVLEAIAEGDDLAEVKVWEVMERDL   75 (125)
T ss_dssp             -CHHHHCBC--SCCEEETTCBHH-HHHHHHHHHCCCEEEEEE-T-TEEEEEEEHHHHHHHHHHTCCTTTSBHHHHCBCGG
T ss_pred             CCHHHhcCC--CceEECCCCcHH-HHHHHHHHcCCCEEEEEe-C-CeeEEEEeHHHHHHHHhcCCcccccCHHHHcCCCC
Confidence            368999986  688899999998 999999999999999998 4 899999999999865321    2468899998899


Q ss_pred             ceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          302 PRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       302 ~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      .++++++++.++++.|.+++.+.+||+|
T Consensus        76 ~~v~~~~~l~~~~~~~~~~~~~~l~Vvd  103 (125)
T 1pbj_A           76 VTISPRATIKEAAEKMVKNVVWRLLVEE  103 (125)
T ss_dssp             GEECTTSCHHHHHHHHHHHTCSEEEEEE
T ss_pred             eEECCCCCHHHHHHHHHhcCCcEEEEEE
Confidence            9999999999999999999999999999

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=99.64  E-value=4.5e-16  Score=141.11  Aligned_cols=101  Identities=23%  Similarity=0.258  Sum_probs=90.7

Q ss_pred             cccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCC-----CCCCccccccccC
Q 013310          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP-----ETETPVSAVSIRR  300 (445)
Q Consensus       226 ~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~-----~~~~~v~~im~~~  300 (445)
                      .+|+++|++  +++++++++++. ++++.|.+++++++||++++ ++++|+++.+|++....     ....+++++|.++
T Consensus         9 ~~v~~im~~--~~~~v~~~~~l~-ea~~~~~~~~~~~~pVvd~~-g~~vGivt~~dl~~~~~~~~~~~~~~~v~~im~~~   84 (184)
T 1pvm_A            9 MRVEKIMNS--NFKTVNWNTTVF-DAVKIMNENHLYGLVVKDDN-GNDVGLLSERSIIKRFIPRNKKPDEVPIRLVMRKP   84 (184)
T ss_dssp             CBGGGTSBT--TCCEEETTCBHH-HHHHHHHHHTCCEEEEECTT-SCEEEEEEHHHHHHHTGGGCCCGGGSBGGGTSBSS
T ss_pred             cCHHHhcCC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEeHHHHHHHHhhcccCcccCCHHHHhCCC
Confidence            689999985  688999999998 99999999999999999865 78999999999987543     1346899999889


Q ss_pred             CceeCCCCCHHHHHHHHhhCCCeEEEEEcc
Q 013310          301 IPRVPSDMPLYDILNEFQKGSSHMAAVVKA  330 (445)
Q Consensus       301 ~~~V~~~~~l~~al~~m~~~~~~~a~Vvde  330 (445)
                      ++++++++++.++++.|.+++.+.+||+|+
T Consensus        85 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~  114 (184)
T 1pvm_A           85 IPKVKSDYDVKDVAAYLSENGLERCAVVDD  114 (184)
T ss_dssp             CCEEETTCBHHHHHHHHHHHTCSEEEEECT
T ss_pred             CcEECCCCCHHHHHHHHHHcCCcEEEEEcC
Confidence            999999999999999999999999999993

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=99.64  E-value=3.9e-16  Score=138.33  Aligned_cols=102  Identities=24%  Similarity=0.256  Sum_probs=90.4

Q ss_pred             cccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCC------------CCCC
Q 013310          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP------------ETET  291 (445)
Q Consensus       224 ~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~------------~~~~  291 (445)
                      ...+|+++|++  +++++++++++. ++++.|.+++++++||+|++ ++++|+|+.+|+++...            ....
T Consensus         3 ~~~~v~dim~~--~~~~v~~~~tl~-~a~~~m~~~~~~~~pVvd~~-~~lvGivt~~dl~~~~~~~~~~~~~~~~~~~~~   78 (160)
T 2o16_A            3 LMIKVEDMMTR--HPHTLLRTHTLN-DAKHLMEALDIRHVPIVDAN-KKLLGIVSQRDLLAAQESSLQRSAQGDSLAFET   78 (160)
T ss_dssp             CCCBGGGTSEE--SCCCBCTTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHHHHHCC---------CCC
T ss_pred             CcCcHHHHhcC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEeHHHHHHHHHHhhcccccccchhccc
Confidence            45789999986  678899999998 99999999999999999865 78999999999986421            2346


Q ss_pred             ccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          292 PVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       292 ~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      ++.++|.++++++++++++.++++.|.+++.+.+||+|
T Consensus        79 ~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd  116 (160)
T 2o16_A           79 PLFEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVA  116 (160)
T ss_dssp             BHHHHSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEE
T ss_pred             CHHHHhcCCCeEECCCCCHHHHHHHHHHhCCCEEEEEE
Confidence            88999988999999999999999999999999999999

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=99.63  E-value=5.1e-16  Score=134.01  Aligned_cols=103  Identities=15%  Similarity=0.178  Sum_probs=87.6

Q ss_pred             Cccccccc---ccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCC-----CCCccc
Q 013310          223 LTEKTAEE---AMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE-----TETPVS  294 (445)
Q Consensus       223 l~~~~V~d---iMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~-----~~~~v~  294 (445)
                      +-+.++++   +|+  ++++++++++++. ++++.|.+++++++||++++ ++++|+++.+|+++....     ...++.
T Consensus         5 ~~~~~v~~~~~~~~--~~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~v~   80 (144)
T 2nyc_A            5 FLKIPIGDLNIITQ--DNMKSCQMTTPVI-DVIQMLTQGRVSSVPIIDEN-GYLINVYEAYDVLGLIKGGIYNDLSLSVG   80 (144)
T ss_dssp             GGGSBGGGSSCCBC--SSCCCBCTTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHHHTC----CCSBHH
T ss_pred             hhhcchhhcCCCCC--CCceEECCCCcHH-HHHHHHHHcCcceeeEEcCC-CcEEEEEcHHHHHHHhcccccccCCccHH
Confidence            44668888   776  3688999999998 99999999999999999865 799999999999875322     246788


Q ss_pred             ccccc------CCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          295 AVSIR------RIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       295 ~im~~------~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      ++|.+      ++.++++++++.++++.|.+++.+.+||+|
T Consensus        81 ~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd  121 (144)
T 2nyc_A           81 EALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVD  121 (144)
T ss_dssp             HHHHHCC------CEECTTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             HHHhcCccccCCCeEECCCCcHHHHHHHHHHCCCCEEEEEC
Confidence            88865      688999999999999999999999999999

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.63  E-value=7.9e-17  Score=159.35  Aligned_cols=188  Identities=12%  Similarity=0.108  Sum_probs=145.0

Q ss_pred             ccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCC----EEEEEEhhhhhccCCC-------CCCcccc--
Q 013310          229 EEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKN----IIGLLLVKSLLTVRPE-------TETPVSA--  295 (445)
Q Consensus       229 ~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~----ivGiv~~kDll~~~~~-------~~~~v~~--  295 (445)
                      +++|.++.+++++++++++. ++++.|.+++++++||++++.++    ++|+++.+|+++....       ...++++  
T Consensus       110 ~~im~~~~~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~~~~~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~v~~l~  188 (334)
T 2qrd_G          110 RKIGAIPPETIYVHPMHSLM-DACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMNCKETAMLRVPLNQMT  188 (334)
T ss_dssp             HHHTCSCSSCCCBCTTSBHH-HHHHHHHHSCCSEEEEEEEETTTTEEEEEEEEEHHHHHHHHHHHCGGGGGCCCBGGGSS
T ss_pred             HhhccCCCceeeeCCCCcHH-HHHHHHHHCCceEEEEEeCCCCcCccceEEEeeHHHHHHHHHhhccchhhhhCcHHHhC
Confidence            35677655568999999998 99999999999999999865344    9999999999865321       1356778  


Q ss_pred             -ccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEccCCCccCCCCCCCCCcccccccCCCCCCCCcccccccccC----C
Q 013310          296 -VSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEK----T  370 (445)
Q Consensus       296 -im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Giv~~T~~di~~~i~~~~~~~~~~~~~~~~~~~~----~  370 (445)
                       +|.+++.++++++++.++++.|.+++.+.+||+|++|++.|+|  |.+|+++.+.+..... ...+........    .
T Consensus       189 ~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~~Vvd~~~~~~Gii--t~~dl~~~~~~~~~~~-~~~~v~~~m~~~~~~~~  265 (334)
T 2qrd_G          189 IGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVY--ESVDVMHLIQDGDYSN-LDLSVGEALLKRPANFD  265 (334)
T ss_dssp             CSBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEE--ETHHHHHHHTTSCGGG-GGSBHHHHHTTCCTTCC
T ss_pred             CcccCCceEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEE--EHHHHHHHhhcccccc-ccCcHHHHHhcccccCC
Confidence             4788999999999999999999999999999999999999999  9999998776533111 111111111111    3


Q ss_pred             CceEeeccCCCccccccccCCCCCCCCCccccccccCCCCCCceEEEeehhhHHHHHhc
Q 013310          371 ESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELLQ  429 (445)
Q Consensus       371 ~~~~v~~~~~i~~~~~~~~~~~~~~~~tl~g~~~~~~~~e~g~l~GIVT~~Dile~l~g  429 (445)
                      ..+.++++.++.+..+.|........-+++         ++|+++|+||..|+++.+.+
T Consensus       266 ~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd---------~~g~l~Giit~~dil~~~~~  315 (334)
T 2qrd_G          266 GVHTCRATDRLDGIFDAIKHSRVHRLFVVD---------ENLKLEGILSLADILNYIIY  315 (334)
T ss_dssp             CCCEECTTCBHHHHHHHHHHSCCCEEEEEC---------TTCBEEEEEEHHHHHHHHHS
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEEC---------CCCeEEEEEeHHHHHHHHHh
Confidence            567899999999888888765443333334         57999999999999999986

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=99.63  E-value=6.3e-16  Score=139.49  Aligned_cols=106  Identities=14%  Similarity=0.172  Sum_probs=90.8

Q ss_pred             CcccccccccccCCc--eEEe--eCCCCccHHHHHHHHHcCCcEEEeEe-CCCCCEEEEEEhhhhhccCC----------
Q 013310          223 LTEKTAEEAMTPIES--TFSL--DVNSKLDWEAMGKILARGHSRVPVYS-GNPKNIIGLLLVKSLLTVRP----------  287 (445)
Q Consensus       223 l~~~~V~diMtpr~~--vv~v--~~~~sl~~e~l~~~~~~~~s~~PV~~-~~~~~ivGiv~~kDll~~~~----------  287 (445)
                      +.+.+|+++|++..+  ++++  ++++++. ++++.|.+++++++||++ ++.++++|+|+.+|+++...          
T Consensus         8 ~~~~~v~dim~~~~~~~~~~v~~~~~~~~~-~a~~~~~~~~~~~~pVv~~d~~~~lvGiit~~dl~~~~~~~~~~~~~~~   86 (185)
T 2j9l_A            8 AHKTLAMDVMKPRRNDPLLTVLTQDSMTVE-DVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVV   86 (185)
T ss_dssp             -CCCBHHHHSBSCTTSCCCCCEESSCEEHH-HHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCC
T ss_pred             hccCcHHHHhcccccCceEEEecCCCccHH-HHHHHHHhcCCCceeEEEECCCCeEEEEEEHHHHHHHHHhhcccCCCcc
Confidence            357899999998533  6778  9999998 999999999999999993 23489999999999986421          


Q ss_pred             ------------------CCCCccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          288 ------------------ETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       288 ------------------~~~~~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                                        ....++.++|.++++++++++++.++++.|.+++.+.+||+|
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd  146 (185)
T 2j9l_A           87 STSIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH  146 (185)
T ss_dssp             TTCEEECSSSCCCCCTTCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE
T ss_pred             ccceeecccCCcccccccccCccHHHhhCcCCeEeCCCCCHHHHHHHHHhCCCcEEEEEE
Confidence                              124678999888999999999999999999999999999998

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=99.62  E-value=6.2e-16  Score=136.64  Aligned_cols=109  Identities=14%  Similarity=0.159  Sum_probs=90.5

Q ss_pred             HHhhcCcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeC-CCCCEEEEEEhhhhhccCCC--------
Q 013310          218 SGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSG-NPKNIIGLLLVKSLLTVRPE--------  288 (445)
Q Consensus       218 ~~~~~l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~-~~~~ivGiv~~kDll~~~~~--------  288 (445)
                      .+.+.+.+.+|+++|++  +++++++++++. ++++.|.+++++++||+++ +.++++|+++.+|++.....        
T Consensus         5 ~~~~~~~~~~v~dim~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~pVvd~~~~~~~~Givt~~dl~~~~~~~~~~~~~~   81 (164)
T 2pfi_A            5 GRNIGSHHVRVEHFMNH--SITTLAKDTPLE-EVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQAEPPSRAPG   81 (164)
T ss_dssp             -----CCSCBHHHHCBC--CCCCEETTCBHH-HHHHHHHTCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHC-------C
T ss_pred             cccccccCCCHHHHcCC--CCeEECCCCcHH-HHHHHHHhCCCCceeEEecCCCCEEEEEEEHHHHHHHHHhhccccCCc
Confidence            34556788999999986  688899999998 9999999999999999986 24799999999999865321        


Q ss_pred             CCCccccccccC------CceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          289 TETPVSAVSIRR------IPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       289 ~~~~v~~im~~~------~~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      ...++.++|..+      +.++++++++.++++.|.+++.+.+||+|
T Consensus        82 ~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd  128 (164)
T 2pfi_A           82 HQQCLQDILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTS  128 (164)
T ss_dssp             CCCBHHHHHHTTCCCBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEE
T ss_pred             ccchhhhhhcccccccCCceEECCCCcHHHHHHHHHHhCCCEEEEEE
Confidence            124678887665      78899999999999999999999999998

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.62  E-value=2.9e-16  Score=155.09  Aligned_cols=188  Identities=17%  Similarity=0.186  Sum_probs=143.8

Q ss_pred             ccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCC--C--------CCccccc
Q 013310          227 TAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE--T--------ETPVSAV  296 (445)
Q Consensus       227 ~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~--~--------~~~v~~i  296 (445)
                      +++++|++  +++++++++++. ++++.|.+++++++||++++.++++|+++.+|+++....  .        ..+++++
T Consensus       119 ~~~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~v~~~  195 (330)
T 2v8q_E          119 VYLQDSFK--PLVCISPNASLF-DAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFITEFPKPEFMSKSLEEL  195 (330)
T ss_dssp             HHSSSSCC--CCCCBCTTSBHH-HHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHHHHSCSSSCCGGGGSBHHHH
T ss_pred             HHhhcccC--CceEeCCCCCHH-HHHHHHHHCCCCeEEEEeCCCCcEEEEEcHHHHHHHHHHHhhccCchhhhcCCHHHh
Confidence            45688975  688999999998 999999999999999998623799999999999875321  1        1234443


Q ss_pred             --cc-cCCceeCCCCCHHHHHHHHhhCCCeEEEEEccCCCccCCCCCCCCCcccccccCCCCCCCCccccccc----ccC
Q 013310          297 --SI-RRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQ----DEK  369 (445)
Q Consensus       297 --m~-~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Giv~~T~~di~~~i~~~~~~~~~~~~~~~~~----~~~  369 (445)
                        |. ++++++++++++.++++.|.+++.+.+||+|++|.++|+|  |.+|+++......... ...+.....    ...
T Consensus       196 ~v~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~l~Gii--t~~dl~~~~~~~~~~~-~~~~v~~~~~~~~~~~  272 (330)
T 2v8q_E          196 QIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIY--SKFDVINLAAEKTYNN-LDVSVTKALQHRSHYF  272 (330)
T ss_dssp             TCSBCSSCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEE--EGGGTGGGGGSSCCCC-CSSBHHHHGGGCCSCC
T ss_pred             cccCcCCceEECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEE--EHHHHHHHHhcccccc-ccCcHHHHHhcccccc
Confidence              33 7888999999999999999999999999999999999999  9999998876543221 112211111    113


Q ss_pred             CCceEeeccCCCccccccccCCCCCCCCCccccccccCCCCCCceEEEeehhhHHHHHhc
Q 013310          370 TESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELLQ  429 (445)
Q Consensus       370 ~~~~~v~~~~~i~~~~~~~~~~~~~~~~tl~g~~~~~~~~e~g~l~GIVT~~Dile~l~g  429 (445)
                      ...+.++++.++.+..+.+........-+++         ++|+++|+||..|+++.+..
T Consensus       273 ~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd---------~~g~l~Giit~~Dil~~~~~  323 (330)
T 2v8q_E          273 EGVLKCYLHETLEAIINRLVEAEVHRLVVVD---------EHDVVKGIVSLSDILQALVL  323 (330)
T ss_dssp             CSCCEECTTSBHHHHHHHHHHHTCSEEEEEC---------TTSBEEEEEEHHHHHHHHHS
T ss_pred             CCCeEECCCCcHHHHHHHHHHCCCcEEEEEc---------CCCcEEEEEeHHHHHHHHHh
Confidence            5667889999998888877765443333334         57999999999999999884

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=99.59  E-value=4.5e-16  Score=167.42  Aligned_cols=124  Identities=19%  Similarity=0.090  Sum_probs=109.3

Q ss_pred             cccccccccccCCceEEeeCCCCccHHHHHHHH-HcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCCC------------
Q 013310          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKIL-ARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETE------------  290 (445)
Q Consensus       224 ~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~-~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~------------  290 (445)
                      .+.+|+|+|+|++++++++++++++ |+.+.|. +++++++||+|++ ++++|+|+.+|+++......            
T Consensus       451 ~~~~V~diM~p~~~v~~v~~~~t~~-e~~~~~~~~~~~~~~PVvd~~-~~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~  528 (632)
T 3org_A          451 PEMTAREIMHPIEGEPHLFPDSEPQ-HIKGILEKFPNRLVFPVIDAN-GYLLGAISRKEIVDRLQHVLEDVPEPIAGHRT  528 (632)
T ss_dssp             TTSBHHHHCBCTTTSCCBCSSSCHH-HHHHHHHHSTTCCEECBBCTT-CBBCCEESHHHHTTTTTTC-------------
T ss_pred             ccCcHHHHhhcCCCceEecCCCcHH-HHHHHHHhcCCcceEEEEecC-CeEEEEEEHHHHHHHHHHHhhhcccccccccc
Confidence            6789999999988999999999998 9999999 7999999999874 79999999999987543210            


Q ss_pred             ---------------------------------------CccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEccC
Q 013310          291 ---------------------------------------TPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAK  331 (445)
Q Consensus       291 ---------------------------------------~~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~  331 (445)
                                                             .+++++|.+++.+|++++++.++++.|++++.+.+||+ |+
T Consensus       529 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt~~pitV~~~~~l~ea~~~M~~~~i~~lpVv-e~  607 (632)
T 3org_A          529 LVLLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDVSPIVVTSYSLVRQLHFLFVMLMPSMIYVT-ER  607 (632)
T ss_dssp             ------------------------------------------CCSCCCCCCEEETTCBHHHHHHHHHHTCCSEEEEE-ET
T ss_pred             eeccCHHHHHhhcccCCCCCcccchhhhcccceEeeccccccchhhcCCCceecCCCcHHHHHHHHHhcCCCEEEEE-EC
Confidence                                                   03778999999999999999999999999999999999 89


Q ss_pred             CCccCCCCCCCCCcccccccC
Q 013310          332 GKSKTLPPMTDGKKPKLNEAK  352 (445)
Q Consensus       332 G~~~Giv~~T~~di~~~i~~~  352 (445)
                      |+++|+|  |.+|+++.+..+
T Consensus       608 G~lvGIV--T~~Dll~~~~~~  626 (632)
T 3org_A          608 GKLVGIV--EREDVAYGYSNS  626 (632)
T ss_dssp             TEEEEEE--EGGGTEECCCC-
T ss_pred             CEEEEEE--ehhhHHHHHhhh
Confidence            9999999  999999887644

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.58  E-value=1.2e-14  Score=135.29  Aligned_cols=117  Identities=11%  Similarity=0.001  Sum_probs=102.3

Q ss_pred             cccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCCCCccccccccCCceeC
Q 013310          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVP  305 (445)
Q Consensus       226 ~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~im~~~~~~V~  305 (445)
                      -+++++|++  +++++++++++. ++++.|.+++++++||++++ ++++|+++.+|+.+...  +.+++++|.+++++++
T Consensus        13 ~~~~~~~~~--~~~~v~~~~tv~-ea~~~m~~~~~~~~pVvd~~-~~l~Givt~~dl~~~~~--~~~v~~im~~~~~~v~   86 (213)
T 1vr9_A           13 MKVKKWVTQ--DFPMVEESATVR-ECLHRMRQYQTNECIVKDRE-GHFRGVVNKEDLLDLDL--DSSVFNKVSLPDFFVH   86 (213)
T ss_dssp             CBGGGGCBS--CSCEEETTCBHH-HHHHHHHHTTSSEEEEECTT-SBEEEEEEGGGGTTSCT--TSBSGGGCBCTTCCEE
T ss_pred             cCHHHhhcC--CCeEECCCCcHH-HHHHHHHHCCCCEEEEEcCC-CEEEEEEEHHHHHhhcC--CCcHHHHccCCCEEEC
Confidence            578999985  688999999998 99999999999999999864 78999999999987654  4689999999999999


Q ss_pred             CCCCHHHHHHHHhhCCCeEEEEEccCCCccCCCCCCCCCcccccc
Q 013310          306 SDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNE  350 (445)
Q Consensus       306 ~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Giv~~T~~di~~~i~  350 (445)
                      +++++.++++.|.+++.+.+||+|++|+++|+|  |.+|+++.+.
T Consensus        87 ~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGii--t~~Dil~~~~  129 (213)
T 1vr9_A           87 EEDNITHALLLFLEHQEPYLPVVDEEMRLKGAV--SLHDFLEALI  129 (213)
T ss_dssp             TTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEE--EHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHhCCCEEEEEcCCCEEEEEE--EHHHHHHHHH
Confidence            999999999999999999999999767777777  6666666554

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=99.56  E-value=1.4e-14  Score=151.30  Aligned_cols=150  Identities=15%  Similarity=0.185  Sum_probs=118.9

Q ss_pred             cccHHHHHHHHHHhhhhhccCCCCC-----HHHHHHHHHhhcCcccccccccccCCceEEeeCCCCccHHHHHHHHHcCC
Q 013310          186 LFRRAQLKALVTIHSQEAGKGGELT-----HDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGH  260 (445)
Q Consensus       186 ~~s~eEl~~li~~~~~e~~~~g~l~-----~~E~~~l~~~~~l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~  260 (445)
                      .+|++|+...+..    ....|.+.     +++++++.++++     ++++|++  +++++++++++. ++++.|.++++
T Consensus        54 ~vt~~eLa~av~~----~Gg~G~i~~~~~~e~~~~~i~~v~~-----~~~im~~--~~~~v~~~~tv~-ea~~~m~~~~~  121 (491)
T 1zfj_A           54 TVTGSKMAIAIAR----AGGLGVIHKNMSITEQAEEVRKVKR-----SENGVII--DPFFLTPEHKVS-EAEELMQRYRI  121 (491)
T ss_dssp             TTCSHHHHHHHHH----TTCEEEECCSSCHHHHHHHHHHHHH-----HTTTTSS--SCCCBCSSSBHH-HHHHHHHHTTC
T ss_pred             hccHHHHHHHHHH----cCCceEEeCCCCHHHHHHHHHHHhh-----HHhcCcC--CCeEECCCCcHH-HHHHHHHHcCC
Confidence            4677899988863    22233444     677888888765     4789986  688899999998 99999999999


Q ss_pred             cEEEeEeC-CCCCEEEEEEhhhhhccCCCCCCcccccccc-CCceeCCCCCHHHHHHHHhhCCCeEEEEEccCCCccCCC
Q 013310          261 SRVPVYSG-NPKNIIGLLLVKSLLTVRPETETPVSAVSIR-RIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLP  338 (445)
Q Consensus       261 s~~PV~~~-~~~~ivGiv~~kDll~~~~~~~~~v~~im~~-~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Giv  338 (445)
                      +++||+++ +.++++|+|+.+|++... ..+.+++++|.+ +++++++++++.++++.|++++.+.+||+|++|+++|++
T Consensus       122 ~~~pVvd~~~~~~lvGivt~~Dl~~~~-~~~~~v~~im~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGiv  200 (491)
T 1zfj_A          122 SGVPIVETLANRKLVGIITNRDMRFIS-DYNAPISEHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLI  200 (491)
T ss_dssp             SEEEEESCTTTCBEEEEEEHHHHHHCS-CSSSBTTTSCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEE
T ss_pred             CEEEEEEeCCCCEEEEEEEHHHHhhhc-cCCCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEE
Confidence            99999982 348999999999998653 345789999887 899999999999999999999999999999555555555


Q ss_pred             CCCCCCcccccc
Q 013310          339 PMTDGKKPKLNE  350 (445)
Q Consensus       339 ~~T~~di~~~i~  350 (445)
                        |.+|+++.+.
T Consensus       201 --t~~Dil~~~~  210 (491)
T 1zfj_A          201 --TIKDIEKVIE  210 (491)
T ss_dssp             --EHHHHHHHHH
T ss_pred             --EHHHHHHHHh
Confidence              4444444443

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=99.55  E-value=1.7e-15  Score=158.01  Aligned_cols=150  Identities=16%  Similarity=0.217  Sum_probs=113.5

Q ss_pred             ccccHHHHHHHHHHhhhhhccCCCC-----CHHHHHHHHHhhcCcccccccccccCCceEEeeCCCCccHHHHHHHHHcC
Q 013310          185 ALFRRAQLKALVTIHSQEAGKGGEL-----THDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARG  259 (445)
Q Consensus       185 ~~~s~eEl~~li~~~~~e~~~~g~l-----~~~E~~~l~~~~~l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~  259 (445)
                      ..+|++++...+...    ..-|.+     .+++++++.++     ++++++|++  +++++++++++. ++++.|.+++
T Consensus        52 dtVTe~~ma~a~a~~----GGiGvI~~n~s~e~qa~~V~~V-----k~~~~~m~~--d~v~v~~~~tv~-ea~~~m~~~~  119 (496)
T 4fxs_A           52 DTVTEARLAIALAQE----GGIGFIHKNMSIEQQAAQVHQV-----KIFEAGVVT--HPVTVRPEQTIA-DVMELTHYHG  119 (496)
T ss_dssp             TTTCSHHHHHHHHHH----TCEEEECSSSCHHHHHHHHHHH-----HHCCC--CB--CCCCBCSSSBHH-HHHHHHTSSC
T ss_pred             chhhHHHHHHHHHHc----CCcceecCCCCHHHHHHHHHhc-----ccccccccc--CceEECCCCCHH-HHHHHHHHcC
Confidence            457888888777532    122334     56778888888     567889984  788999999998 9999999999


Q ss_pred             CcEEEeEeCCCCCEEEEEEhhhhhccCCCCCCccccccc-c-CCceeCCCCCHHHHHHHHhhCCCeEEEEEccCCCccCC
Q 013310          260 HSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSI-R-RIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTL  337 (445)
Q Consensus       260 ~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~im~-~-~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Gi  337 (445)
                      ++++||++++ ++++|+|+.+|+... ...+.+++++|. + +++++++++++.++++.|++++.+.+||+|++|.++|+
T Consensus       120 ~s~~PVvd~~-~~lvGiVt~rDL~~~-~~~~~~v~diM~p~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~G~l~Gi  197 (496)
T 4fxs_A          120 FAGFPVVTEN-NELVGIITGRDVRFV-TDLTKSVAAVMTPKERLATVKEGATGAEVQEKMHKARVEKILVVNDEFQLKGM  197 (496)
T ss_dssp             CCEEEEECSS-SBEEEEEEHHHHTTC-CCTTSBGGGTSEEGGGCCEEECC----CGGGTCC---CCCEEEECTTSBCCEE
T ss_pred             CcEEEEEccC-CEEEEEEEHHHHhhc-ccCCCcHHHHhcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEe
Confidence            9999999975 899999999999743 234578999987 4 58999999999999999999999999999999999999


Q ss_pred             CCCCCCCcccccc
Q 013310          338 PPMTDGKKPKLNE  350 (445)
Q Consensus       338 v~~T~~di~~~i~  350 (445)
                      |  |.+|+++...
T Consensus       198 I--T~~DIl~~~~  208 (496)
T 4fxs_A          198 I--TAKDFHKAES  208 (496)
T ss_dssp             E--CCC-----CC
T ss_pred             e--hHhHHHHhhc
Confidence            9  9999998654

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=99.54  E-value=2.1e-14  Score=150.27  Aligned_cols=149  Identities=15%  Similarity=0.185  Sum_probs=116.9

Q ss_pred             cccHHHHHHHHHHhhhhhccCCCCC-----HHHHHHHHHhhcCcccccccccccCCceEEeeCCCCccHHHHHHHHHcCC
Q 013310          186 LFRRAQLKALVTIHSQEAGKGGELT-----HDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGH  260 (445)
Q Consensus       186 ~~s~eEl~~li~~~~~e~~~~g~l~-----~~E~~~l~~~~~l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~  260 (445)
                      ..|++++...+....    .-|.+.     +++.+++.++.     +.++.|++  +++++++++++. ++++.|.++++
T Consensus        77 tvTe~~lAia~a~~G----giGvIh~~~~~~~q~~~V~~V~-----~~~~~m~~--d~v~l~~~~tv~-ea~~~m~~~~~  144 (511)
T 3usb_A           77 TVTEADMAIAMARQG----GLGIIHKNMSIEQQAEQVDKVK-----RSESGVIS--DPFFLTPEHQVY-DAEHLMGKYRI  144 (511)
T ss_dssp             TTCSHHHHHHHHHHT----CEEEECSSSCHHHHHHHHHHHH-----TSSSCSSS--SCCCBCTTSBHH-HHHHHHHHHCC
T ss_pred             hhcHHHHHHHHHhcC----CceeecccCCHHHHHHHHHHhh-----cccccccc--CCEEECCCCCHH-HHHHHHHHcCC
Confidence            467888876665221    123332     34555677774     35567764  688999999998 99999999999


Q ss_pred             cEEEeEeC--CCCCEEEEEEhhhhhccCCCCCCcccccccc-CCceeCCCCCHHHHHHHHhhCCCeEEEEEccCCCccCC
Q 013310          261 SRVPVYSG--NPKNIIGLLLVKSLLTVRPETETPVSAVSIR-RIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTL  337 (445)
Q Consensus       261 s~~PV~~~--~~~~ivGiv~~kDll~~~~~~~~~v~~im~~-~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Gi  337 (445)
                      +++||+++  + ++++|+|+.+|++.. ...+.+++++|.+ +++++++++++.++++.|++++.+.+||+|++|.++|+
T Consensus       145 s~~pVvd~g~~-~~lvGiVt~rDl~~~-~~~~~~V~~vM~~~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe~g~l~Gi  222 (511)
T 3usb_A          145 SGVPVVNNLDE-RKLVGIITNRDMRFI-QDYSIKISDVMTKEQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGL  222 (511)
T ss_dssp             SEEEEESCTTT-CBEEEEEEHHHHTTC-CCSSSBHHHHCCCCCCCCEETTCCHHHHHHHHHHHTCSEEEEECTTSBEEEE
T ss_pred             cEEEEEecCCC-CEEEEEEEehHhhhh-ccCCCcHHHhcccCCCEEECCCCCHHHHHHHHHHcCCCEEEEEeCCCCEeee
Confidence            99999986  4 899999999999763 3345789999987 89999999999999999999999999999976666666


Q ss_pred             CCCCCCCcccccc
Q 013310          338 PPMTDGKKPKLNE  350 (445)
Q Consensus       338 v~~T~~di~~~i~  350 (445)
                      |  |.+|+++.+.
T Consensus       223 I--T~~Dil~~~~  233 (511)
T 3usb_A          223 I--TIKDIEKVIE  233 (511)
T ss_dssp             E--EHHHHHHHHH
T ss_pred             c--cHHHHHHhhh
Confidence            6  6666665554

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=99.53  E-value=1e-14  Score=138.20  Aligned_cols=102  Identities=17%  Similarity=0.220  Sum_probs=88.7

Q ss_pred             ccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCC----------------
Q 013310          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE----------------  288 (445)
Q Consensus       225 ~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~----------------  288 (445)
                      ..+|+|+|++  +++++++++++. ++++.|.+++++++||+|++ ++++|+++.+|+++....                
T Consensus         6 ~~~v~~im~~--~~~~v~~~~~~~-~a~~~m~~~~~~~lpVvd~~-~~l~Giit~~di~~~~~~~~~~~~~~~~~~~~~~   81 (245)
T 3l2b_A            6 KLKVEDLEMD--KIAPLAPEVSLK-MAWNIMRDKNLKSIPVADGN-NHLLGMLSTSNITATYMDIWDSNILAKSATSLDN   81 (245)
T ss_dssp             CCBGGGSCCB--CCCCBCTTCBHH-HHHHHHHHTTCSEEEEECTT-CBEEEEEEHHHHHHHHHCCCCTTHHHHTTCCHHH
T ss_pred             cCcHHHhcCC--CCcEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHHHHHhhhhhhhhhccCCHHH
Confidence            4689999985  688999999998 99999999999999999875 799999999999764210                


Q ss_pred             --------------------------------------------------------------------------------
Q 013310          289 --------------------------------------------------------------------------------  288 (445)
Q Consensus       289 --------------------------------------------------------------------------------  288 (445)
                                                                                                      
T Consensus        82 v~~~l~~~~l~~~~~~~~~~g~~~i~a~~~~~~~~~~~~~~ivIvgdr~~~~~~~i~~~~~~liit~~~~~~~~v~~~a~  161 (245)
T 3l2b_A           82 ILDTLSAEAQNINEERKVFPGKVVVAAMQAESLKEFISEGDIAIAGDRAEIQAELIELKVSLLIVTGGHTPSKEIIELAK  161 (245)
T ss_dssp             HHHHTTCEEEECCTTCCCCCSCEEECCSCGGGGGGTCCTTCEEEECSCHHHHHHHHHTTCSEEEECTTCCCCHHHHHHHH
T ss_pred             HHHHhCCEEEeccCCcceeeeeEEEEeCChHHHHhcCCCCCEEEECCCHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHH
Confidence                                                                                            


Q ss_pred             ---------------------CCCccccccc-cCCceeCCCCCHHHHHHHHhhCCCeEEEEEcc
Q 013310          289 ---------------------TETPVSAVSI-RRIPRVPSDMPLYDILNEFQKGSSHMAAVVKA  330 (445)
Q Consensus       289 ---------------------~~~~v~~im~-~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde  330 (445)
                                           ...+++++|. +++.++++++++.++++.|.+++.+.+||+|+
T Consensus       162 ~~~~~~i~t~~d~~~~~~~~~~~~~v~~im~~~~~~~~~~~~~~~~~~~~m~~~~~~~~pVvd~  225 (245)
T 3l2b_A          162 KNNITVITTPHDSFTASRLIVQSLPVDYVMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDE  225 (245)
T ss_dssp             HHTCEEEECSSCHHHHHHHGGGGSBHHHHSBCTTCCCEETTSBHHHHHHHHHHHCCSEEEEECT
T ss_pred             HcCCeEEEeCCChHHHHHHHhcCCceeeEecCCccEEECCCCcHHHHHHHHHhcCCceEEEEcC
Confidence                                 0235778888 89999999999999999999999999999994

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=99.50  E-value=3.7e-14  Score=135.24  Aligned_cols=60  Identities=8%  Similarity=0.077  Sum_probs=53.2

Q ss_pred             cCcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCC-CCCEEEEEEhhhhhc
Q 013310          222 DLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGN-PKNIIGLLLVKSLLT  284 (445)
Q Consensus       222 ~l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~-~~~ivGiv~~kDll~  284 (445)
                      ...+.+|+|+|++  +++++.+++++. ++.+.|.+++++++||++++ .++++|+|+.+||++
T Consensus         9 ~~~~~~v~diMt~--~vvtv~~~~tv~-~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~   69 (250)
T 2d4z_A            9 NKYNIQVGDIMVR--DVTSIASTSTYG-DLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEG   69 (250)
T ss_dssp             CCSSCBTTSSSBS--SCCCEETTCBHH-HHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHH
T ss_pred             ccCCCChHHhcCC--CCeEECCCCCHH-HHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHH
Confidence            3567899999985  789999999998 99999999999999999864 257999999999975

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=99.50  E-value=3.9e-14  Score=149.28  Aligned_cols=102  Identities=13%  Similarity=0.165  Sum_probs=88.8

Q ss_pred             CcccccccccccCCceEEeeCC-CCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCC----CCCCcccccc
Q 013310          223 LTEKTAEEAMTPIESTFSLDVN-SKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP----ETETPVSAVS  297 (445)
Q Consensus       223 l~~~~V~diMtpr~~vv~v~~~-~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~----~~~~~v~~im  297 (445)
                      +.+.+|+++|++  ++++++++ +++. ++++.|.+++++++||+|++.++++|+|+.+|+++...    ..+.+++++|
T Consensus       381 l~~~~V~diM~~--~~vtv~~~~~tv~-ea~~~m~~~~~~~lpVvd~~~g~lvGiVt~~Dll~~l~~~~~~~~~~V~~im  457 (527)
T 3pc3_A          381 WWSLAIAELELP--APPVILKSDATVG-EAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSMNRQQSDPAIKAL  457 (527)
T ss_dssp             TTTSBGGGGCCC--CCSCCEETTCBHH-HHHHHHHHHTCSEEEEECTTTCCEEEEEEHHHHHHHHHHHCCCTTSBGGGGE
T ss_pred             ccCCcHHHhCcC--CCeEEcCCCCcHH-HHHHHHHHcCCCeEEEEECCCCEEEEEEEHHHHHHHHHhccCcCCCcHHHHh
Confidence            567899999985  68899999 9998 99999999999999999833489999999999986432    2347899999


Q ss_pred             ccCCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          298 IRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       298 ~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      .+++++|++++++.++++.|.+++  ++||+|
T Consensus       458 ~~~~~~v~~~~~l~~a~~~m~~~~--~~pVVd  487 (527)
T 3pc3_A          458 NKRVIRLNESEILGKLARVLEVDP--SVLILG  487 (527)
T ss_dssp             ETTCCEEETTSBHHHHHHHHTTCS--EEEEEE
T ss_pred             cCCCeEECCCCcHHHHHHHHhhCC--EEEEEe
Confidence            999999999999999999997765  479998

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=99.47  E-value=8.9e-15  Score=153.16  Aligned_cols=158  Identities=9%  Similarity=0.066  Sum_probs=20.2

Q ss_pred             cccHHHHHHHHHHhhhhhccCCCCC-HHHHHHHHHhhcCcccccccc-cccCCceEEeeCCCCccHHHHHHHHHcCCcEE
Q 013310          186 LFRRAQLKALVTIHSQEAGKGGELT-HDETTIISGALDLTEKTAEEA-MTPIESTFSLDVNSKLDWEAMGKILARGHSRV  263 (445)
Q Consensus       186 ~~s~eEl~~li~~~~~e~~~~g~l~-~~E~~~l~~~~~l~~~~V~di-Mtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~  263 (445)
                      ..+++++...+......+.-...++ +++++++.++.      ..++ |++  +++++++++++. ++++.|.+++++++
T Consensus        61 ~vt~~~la~~la~~gg~G~I~~~~~~e~~~~~v~~V~------~~e~gM~~--~~~~v~~~~tv~-eal~~m~~~~~s~~  131 (503)
T 1me8_A           61 SVSGEKMAIALAREGGISFIFGSQSIESQAAMVHAVK------NFKAGFVV--SDSNVKPDQTFA-DVLAISQRTTHNTV  131 (503)
T ss_dssp             TTCSHHHHHHHHHTTCEEEECCSSCHHHHHHHHHHHH------TTTC---------------------------------
T ss_pred             hhhHHHHHHHHHhCCCcceeeCCCCHHHHHHHHhhhh------hcccCccc--CCeEECCCCcHH-HHHHHHHHcCceEE
Confidence            4567888777752110000001122 45667776554      3455 986  788999999999 99999999999999


Q ss_pred             EeEeCC--CCCEEEEEEhhhhhccCCCCCCccccccccC--CceeCCCCCHHHHHHHHhhCCCeEEEEEccCCCccCCCC
Q 013310          264 PVYSGN--PKNIIGLLLVKSLLTVRPETETPVSAVSIRR--IPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPP  339 (445)
Q Consensus       264 PV~~~~--~~~ivGiv~~kDll~~~~~~~~~v~~im~~~--~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Giv~  339 (445)
                      ||++++  .++++|+|+.+|++......+.+++++|.++  ++++++++++.++++.|++++.+.+||+|++|+++|+| 
T Consensus       132 pVvd~~~~~g~lvGiVt~~Dl~~~~~~~~~~V~diM~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe~g~lvGiI-  210 (503)
T 1me8_A          132 AVTDDGTPHGVLLGLVTQRDYPIDLTQTETKVSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQHLRYIV-  210 (503)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEECCCcCCeEEEEEEHHHHHhhhccccCcHHHHhCCCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEE-
Confidence            999864  3789999999999863222347899998876  99999999999999999999999999999999999999 


Q ss_pred             CCCCCcccccccCCC
Q 013310          340 MTDGKKPKLNEAKGG  354 (445)
Q Consensus       340 ~T~~di~~~i~~~~~  354 (445)
                       |.+|+++.+.....
T Consensus       211 -T~~Dil~~~~~~~~  224 (503)
T 1me8_A          211 -FRKDYDRSQVCHNE  224 (503)
T ss_dssp             ------------CCC
T ss_pred             -EecHHHHhhhcccc
Confidence             99999998875543

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=99.43  E-value=1.8e-14  Score=150.33  Aligned_cols=146  Identities=13%  Similarity=0.196  Sum_probs=22.9

Q ss_pred             cccHHHHHHHHHHhhhhhccCCCCC-----HHHHHHHHHhhcCcccccccccccCCceEEeeCCCCccHHHHHHHHHcCC
Q 013310          186 LFRRAQLKALVTIHSQEAGKGGELT-----HDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGH  260 (445)
Q Consensus       186 ~~s~eEl~~li~~~~~e~~~~g~l~-----~~E~~~l~~~~~l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~  260 (445)
                      ..+++|+...+..    ....|.+.     +++++++.+++++.     ++|++  +++++++++++. ++++.|.++++
T Consensus        57 ~vt~~ela~ava~----~GglG~i~~~~~~e~~~~~I~~v~~~~-----~~m~~--~~~~v~~~~tv~-ea~~~~~~~~~  124 (486)
T 2cu0_A           57 TVTEWEMAVAMAR----EGGLGVIHRNMGIEEQVEQVKRVKRAE-----RLIVE--DVITIAPDETVD-FALFLMEKHGI  124 (486)
T ss_dssp             TTCSHHHHHHHHH----TTCEEEECSSSCHHHHHHHHHHHHTCC------------------------------------
T ss_pred             eecHHHHHHHHHh----cCCceeecCCCCHHHHHHHHHhhcchh-----hcccc--CceEECCCCCHH-HHHHHHHHcCC
Confidence            4667888877752    21223343     57788999998764     46874  788999999998 99999999999


Q ss_pred             cEEEeEeCCCCCEEEEEEhhhhhccCCCCCCccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEccCCCccCCCCC
Q 013310          261 SRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPM  340 (445)
Q Consensus       261 s~~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Giv~~  340 (445)
                      +++||+++  ++++|+|+.+|++.   +.+.+++++|.++++++++++++.++++.|++++.+.+||+|++|+++|++  
T Consensus       125 ~~~pVvd~--~~lvGivt~~Dl~~---~~~~~v~~im~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVde~g~lvGii--  197 (486)
T 2cu0_A          125 DGLPVVED--EKVVGIITKKDIAA---REGKLVKELMTKEVITVPESIEVEEALKIMIENRIDRLPVVDERGKLVGLI--  197 (486)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cEEEEEEC--CEEEEEEEHHHhcc---CCCCCHHHHccCCCeEECCcCcHHHHHHHHHHcCCCEEEEEecCCeEEEEE--
Confidence            99999986  79999999999986   345789999988899999999999999999999999999999999999999  


Q ss_pred             CCCCcccccc
Q 013310          341 TDGKKPKLNE  350 (445)
Q Consensus       341 T~~di~~~i~  350 (445)
                      |.+|+++...
T Consensus       198 T~~Dil~~~~  207 (486)
T 2cu0_A          198 TMSDLVARKK  207 (486)
T ss_dssp             ---------C
T ss_pred             EHHHHHHhhh
Confidence            9999998864

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=99.43  E-value=1.7e-14  Score=150.32  Aligned_cols=149  Identities=16%  Similarity=0.203  Sum_probs=22.5

Q ss_pred             ccccHHHHHHHHHHhhhhhccCCCCC-----HHHHHHHHHhhcCcccccccccccCCceEEeeCCCCccHHHHHHHHHcC
Q 013310          185 ALFRRAQLKALVTIHSQEAGKGGELT-----HDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARG  259 (445)
Q Consensus       185 ~~~s~eEl~~li~~~~~e~~~~g~l~-----~~E~~~l~~~~~l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~  259 (445)
                      ..+|++++...+....    .-|.+.     +++++++.++     ++++++|++  +++++++++++. ++++.|.+++
T Consensus        51 ~tVTe~~lA~ala~~G----GiGvI~~~~~~e~~a~~v~~v-----k~~~~~m~~--~~v~v~~~~tv~-ea~~~m~~~~  118 (490)
T 4avf_A           51 DTVTEARLAIAMAQEG----GIGIIHKNMGIEQQAAEVRKV-----KKHETAIVR--DPVTVTPSTKII-ELLQMAREYG  118 (490)
T ss_dssp             TTTCSHHHHHHHHHHT----SEEEECCSSCHHHHHHHHHHH-----HHCCC-----------------------------
T ss_pred             hhhCHHHHHHHHHHcC----CCccccCCCCHHHHHHHhhhh-----cccccCccc--CceEeCCCCcHH-HHHHHHHHhC
Confidence            3467888887775321    123333     5567777776     557889984  688999999999 9999999999


Q ss_pred             CcEEEeEeCCCCCEEEEEEhhhhhccCCCCCCccccccc-c-CCceeCCCCCHHHHHHHHhhCCCeEEEEEccCCCccCC
Q 013310          260 HSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSI-R-RIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTL  337 (445)
Q Consensus       260 ~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~im~-~-~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Gi  337 (445)
                      ++++||++ + ++++|+|+.+|+... ...+.+++++|. + +++++++++++.++++.|++++.+.+||+|++|+++|+
T Consensus       119 ~s~~pVvd-~-g~lvGIVt~rDl~~~-~~~~~~V~~vMtp~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~g~lvGi  195 (490)
T 4avf_A          119 FSGFPVVE-Q-GELVGIVTGRDLRVK-PNAGDTVAAIMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVDENFYLRGL  195 (490)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCEEEEEE-C-CEEEEEEEhHHhhhc-cccCCcHHHHhccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEE
Confidence            99999998 3 799999999999643 234578999987 4 68999999999999999999999999999999999999


Q ss_pred             CCCCCCCcccccc
Q 013310          338 PPMTDGKKPKLNE  350 (445)
Q Consensus       338 v~~T~~di~~~i~  350 (445)
                      |  |.+|+++...
T Consensus       196 I--T~~Dil~~~~  206 (490)
T 4avf_A          196 V--TFRDIEKAKT  206 (490)
T ss_dssp             -------------
T ss_pred             E--ehHHhhhhcc
Confidence            9  9999998754

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=99.27  E-value=6.9e-13  Score=138.67  Aligned_cols=133  Identities=15%  Similarity=0.161  Sum_probs=13.8

Q ss_pred             CCHH-HHHHHHHhhcCcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCC
Q 013310          209 LTHD-ETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP  287 (445)
Q Consensus       209 l~~~-E~~~l~~~~~l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~  287 (445)
                      ++.+ .++.+..+.     +++++|++  +++++++++++. ++++.|.+++++.+||+|++ ++++|+|+.+|+++. .
T Consensus        82 ~~~e~~~~~v~~v~-----~~~~iM~~--~~~~v~~~~tv~-ea~~~m~~~~~~~~pVvd~~-~~lvGivt~~Dl~~~-~  151 (494)
T 1vrd_A           82 LTPDEQARQVSIVK-----KTENGIIY--DPITVTPDMTVK-EAIDLMAEYKIGGLPVVDEE-GRLVGLLTNRDVRFE-K  151 (494)
T ss_dssp             SCHHHHHHHHHHHH-----TC-----------------------------------------------------------
T ss_pred             CChHHHHHHHHhhh-----hHhhcCcc--CCeEECCCCCHH-HHHHHHHHcCceEEEEEcCC-CEEEEEEEHHHHHhh-c
Confidence            3443 344455553     46789985  688999999999 99999999999999999865 789999999999863 2


Q ss_pred             CCCCcccccccc--CCceeCCCCCHHHHHHHHhhCCCeEEEEEccCCCccCCCCCCCCCcccccccCC
Q 013310          288 ETETPVSAVSIR--RIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKG  353 (445)
Q Consensus       288 ~~~~~v~~im~~--~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Giv~~T~~di~~~i~~~~  353 (445)
                      ..+.+++++|.+  +++++++++++.++++.|.+++.+.+||+|++|.++|+|  |.+|+++.+....
T Consensus       152 ~~~~~v~~im~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiI--t~~Dll~~~~~~~  217 (494)
T 1vrd_A          152 NLSKKIKDLMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLI--TIKDIMSVIEHPN  217 (494)
T ss_dssp             -----------------------------------------------------------CHHHHTCTT
T ss_pred             CCCCcHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEE--EHHHHHhhhcccc
Confidence            334789999987  899999999999999999999999999999999999999  9999999887654

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=99.17  E-value=3.2e-12  Score=134.20  Aligned_cols=121  Identities=12%  Similarity=0.203  Sum_probs=72.5

Q ss_pred             cccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCC--CCCEEEEEEhhhhhccCC-CCCCcccccccc--C
Q 013310          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGN--PKNIIGLLLVKSLLTVRP-ETETPVSAVSIR--R  300 (445)
Q Consensus       226 ~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~--~~~ivGiv~~kDll~~~~-~~~~~v~~im~~--~  300 (445)
                      .+++++|++  +++++++++++. ++++.|.+++++.+||+|++  .++++|+|+.+|+..... ....+++++|.+  +
T Consensus       108 ~~~~~im~~--~~~~v~~~~tv~-ea~~~m~~~~~~~~pVvd~~~~~~~lvGiVt~~Dl~~~~~~~~~~~v~~vm~~~~~  184 (514)
T 1jcn_A          108 KNFEQGFIT--DPVVLSPSHTVG-DVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDIDFLAEKDHTTLLSEVMTPRIE  184 (514)
T ss_dssp             HTCCTTSCS--SCCCCCC------------------CEESCC--------CCEECTTTTC----------------CCBC
T ss_pred             hhhhhcccc--CCEEECCCCCHH-HHHHHHHhcCCCEEEEEeCCCcCCEEEEEEEHHHHHhhhhccCCCCHHHHhCCCCC
Confidence            368899985  577899999999 99999999999999999863  378999999999976421 234689999987  8


Q ss_pred             CceeCCCCCHHHHHHHHhhCCCeEEEEEccCCCccCCCCCCCCCccccccc
Q 013310          301 IPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEA  351 (445)
Q Consensus       301 ~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Giv~~T~~di~~~i~~  351 (445)
                      ++++++++++.++++.|.+++.+.+||||++|+++|+|  |.+|+++.+..
T Consensus       185 ~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiI--t~~Dll~~~~~  233 (514)
T 1jcn_A          185 LVVAPAGVTLKEANEILQRSKKGKLPIVNDCDELVAII--ARTDLKKNRDY  233 (514)
T ss_dssp             CCCEETTCCSTTTTTHHHHHTCSCCCEESSSSCCC------CCCCSSCCCC
T ss_pred             CeEECCCCCHHHHHHHHHHcCCCcccEECCCCeEEEEE--EHHHHHHHhhC
Confidence            99999999999999999999999999999999999999  99999987753

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=99.17  E-value=3.7e-12  Score=130.85  Aligned_cols=127  Identities=13%  Similarity=0.227  Sum_probs=7.4

Q ss_pred             HHHHHHHHhhcCcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCC--CCCEEEEEEhhhhhccCCCC
Q 013310          212 DETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGN--PKNIIGLLLVKSLLTVRPET  289 (445)
Q Consensus       212 ~E~~~l~~~~~l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~--~~~ivGiv~~kDll~~~~~~  289 (445)
                      ++.++++.+-++     +..|.  ++++++.++.++. ++++.+.+++++.+||+++.  .++++|||+.+|+...  +.
T Consensus       129 ~Qa~~V~~VKr~-----e~g~i--~dPvtl~P~~Tv~-da~~l~~~~~isgvpVvd~g~~~~kLvGIvT~RD~rf~--d~  198 (556)
T 4af0_A          129 EQAAMVRRVKKY-----ENGFI--TDPLCLGPDATVG-DVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDVQFQ--DA  198 (556)
T ss_dssp             HHHHHHHHHHHC-----CC-------------------------------------------------------------
T ss_pred             HHHHHHHHHHhc-----ccCcc--CCCeEcCCCCCHH-HHHHHHHHhCCCccccccccCcCCEEEEEEeccccccc--cc
Confidence            445666666333     34565  3678999999999 99999999999999999852  3689999999998653  34


Q ss_pred             CCccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEccCCCccCCCCCCCCCcccccc
Q 013310          290 ETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNE  350 (445)
Q Consensus       290 ~~~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Giv~~T~~di~~~i~  350 (445)
                      +.+|+++|+.++++++++.++.+|.+.|++++...+||||+.|.++|+|  |.+|+.+...
T Consensus       199 ~~~V~evMT~~lvt~~~~~~leeA~~iL~~~kieklpVVd~~g~LvGlI--T~kDi~k~~~  257 (556)
T 4af0_A          199 ETPIKSVMTTEVVTGSSPITLEKANSLLRETKKGKLPIVDSNGHLVSLV--ARSDLLKNQN  257 (556)
T ss_dssp             -------------------------------------------------------------
T ss_pred             ceEhhhhcccceEEecCCCCHHHHHHHHHHccccceeEEccCCcEEEEE--Eechhhhhhh
Confidence            5789999999999999999999999999999999999999999999999  9999986553

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=98.77  E-value=1.1e-08  Score=77.73  Aligned_cols=65  Identities=12%  Similarity=0.239  Sum_probs=55.0

Q ss_pred             ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCC-C----CCCccccccccCCcee
Q 013310          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP-E----TETPVSAVSIRRIPRV  304 (445)
Q Consensus       237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~-~----~~~~v~~im~~~~~~V  304 (445)
                      +++++++++++. ++++.|.+++++++||+++  ++++|+++.+|+++... .    .+.+++++|.+++.+|
T Consensus         1 k~vtv~p~~tv~-ea~~~M~~~~i~~~~V~d~--~~lvGIvT~~Di~~~~~~~~~~~~~~~V~~iMt~~~iTV   70 (70)
T 3ghd_A            1 KAIVVQPKDTVD-RVAKILSRNKAGSAVVMEG--DEILGVVTERDILDKVVAKGKNPKEVKVEEIMTKNPVKI   70 (70)
T ss_dssp             CEEEECTTCBHH-HHHHHHHHTTCSEEEEEET--TEEEEEEEHHHHHHHTTTTTCCGGGCBGGGTCEECTTCC
T ss_pred             CCEEECCCCcHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHHHHHHHhcCCCcccCCHHHhcCCCCeEC
Confidence            367899999998 9999999999999999985  78999999999976432 1    2368999999988764

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=98.64  E-value=2.6e-09  Score=114.80  Aligned_cols=128  Identities=15%  Similarity=0.040  Sum_probs=96.2

Q ss_pred             CCCccccccc--cCCceeCCCCCHHHHHHHHh-hCCCeEEEEEccCCCccCCCCCCCCCcccccccCCCCCCCC------
Q 013310          289 TETPVSAVSI--RRIPRVPSDMPLYDILNEFQ-KGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLT------  359 (445)
Q Consensus       289 ~~~~v~~im~--~~~~~V~~~~~l~~al~~m~-~~~~~~a~Vvde~G~~~Giv~~T~~di~~~i~~~~~~~~~~------  359 (445)
                      .+.+++|+|.  +++.++++++++.|+.+.|. +++.+..||+|++|+++|+|  |++|+.+.+.....+.+..      
T Consensus       451 ~~~~V~diM~p~~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~~~~lvGiV--t~~DL~~~l~~~~~~~~~~~~~~~~  528 (632)
T 3org_A          451 PEMTAREIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDANGYLLGAI--SRKEIVDRLQHVLEDVPEPIAGHRT  528 (632)
T ss_dssp             TTSBHHHHCBCTTTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCTTCBBCCEE--SHHHHTTTTTTC-------------
T ss_pred             ccCcHHHHhhcCCCceEecCCCcHHHHHHHHHhcCCcceEEEEecCCeEEEEE--EHHHHHHHHHHHhhhcccccccccc
Confidence            3478999998  88999999999999999999 79999999999999999999  9999988765432110000      


Q ss_pred             -------------------c-----------------ccc-cccccCCCceEeeccCCCccccccccCCCCCC-CCCccc
Q 013310          360 -------------------A-----------------PLL-SKQDEKTESVVVDVDRPLSSGSMNRLSSSQRS-DSTTNG  401 (445)
Q Consensus       360 -------------------~-----------------~~~-~~~~~~~~~~~v~~~~~i~~~~~~~~~~~~~~-~~tl~g  401 (445)
                                         .                 |.. ....+..+.+.++++.++.+..+.+..+..+. ..+   
T Consensus       529 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt~~pitV~~~~~l~ea~~~M~~~~i~~lpVv---  605 (632)
T 3org_A          529 LVLLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDVSPIVVTSYSLVRQLHFLFVMLMPSMIYVT---  605 (632)
T ss_dssp             ------------------------------------------CCSCCCCCCEEETTCBHHHHHHHHHHTCCSEEEEE---
T ss_pred             eeccCHHHHHhhcccCCCCCcccchhhhcccceEeeccccccchhhcCCCceecCCCcHHHHHHHHHhcCCCEEEEE---
Confidence                               0                 000 01123445677999999999998888766554 333   


Q ss_pred             cccccCCCCCCceEEEeehhhHHHHHhc
Q 013310          402 LIYASEDIEDGEVIGIITLEDVFEELLQ  429 (445)
Q Consensus       402 ~~~~~~~~e~g~l~GIVT~~Dile~l~g  429 (445)
                              |+|+++||||.+|+++++..
T Consensus       606 --------e~G~lvGIVT~~Dll~~~~~  625 (632)
T 3org_A          606 --------ERGKLVGIVEREDVAYGYSN  625 (632)
T ss_dssp             --------ETTEEEEEEEGGGTEECCCC
T ss_pred             --------ECCEEEEEEehhhHHHHHhh
Confidence                    48999999999999887653

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=98.51  E-value=1.2e-08  Score=94.34  Aligned_cols=103  Identities=12%  Similarity=0.180  Sum_probs=52.8

Q ss_pred             ccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCCCCccccccccCCc-e
Q 013310          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIP-R  303 (445)
Q Consensus       225 ~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~im~~~~~-~  303 (445)
                      +.+|+++|++  +++++++++++. ++++.|.+++++++||++++ ++++|+++.+|+++..... ....+.+.+-.+ .
T Consensus        71 ~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~lvGiit~~Dil~~~~~~-~~~~~~~~~l~~~~  145 (213)
T 1vr9_A           71 DSSVFNKVSL--PDFFVHEEDNIT-HALLLFLEHQEPYLPVVDEE-MRLKGAVSLHDFLEALIEA-LAMDVPGIRFSVLL  145 (213)
T ss_dssp             TSBSGGGCBC--TTCCEETTSBHH-HHHHHHHHCCCSEEEEECTT-CBEEEEEEHHHHHHHHHHS-CC------------
T ss_pred             CCcHHHHccC--CCEEECCCCcHH-HHHHHHHHhCCCEEEEEcCC-CEEEEEEEHHHHHHHHHHH-hcCCCCcEEEEEEe
Confidence            3469999986  678899999998 99999999999999999865 7999999999998754321 122233322111 1


Q ss_pred             eCCCCCHHHHHHHHhhCCCeEEEEEccCC
Q 013310          304 VPSDMPLYDILNEFQKGSSHMAAVVKAKG  332 (445)
Q Consensus       304 V~~~~~l~~al~~m~~~~~~~a~Vvde~G  332 (445)
                      .....++.++.+.|.+++.+.++|++.+|
T Consensus       146 ~~~~~~l~~~~~~l~~~~~~~l~V~~~~~  174 (213)
T 1vr9_A          146 EDKPGELRKVVDALALSNINILSVITTRS  174 (213)
T ss_dssp             -----------------------------
T ss_pred             CCCCccHHHHHHHHHHCCCcEEEEEEEec
Confidence            23445699999999999999999986443

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=98.46  E-value=6.4e-08  Score=100.80  Aligned_cols=118  Identities=14%  Similarity=0.055  Sum_probs=80.8

Q ss_pred             ccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEccCCCccCCCCCCCCCcccccccCCCCCCCCcccccccccCCC
Q 013310          292 PVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTE  371 (445)
Q Consensus       292 ~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Giv~~T~~di~~~i~~~~~~~~~~~~~~~~~~~~~~  371 (445)
                      .++++|..+++++++++++.++++.|.+++.+.+||+|+.|+++|+|  |.+|+....       +...+....+.....
T Consensus        90 ~~~~~m~~d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~~~~lvGiV--t~rDL~~~~-------~~~~~v~diM~p~~~  160 (496)
T 4fxs_A           90 IFEAGVVTHPVTVRPEQTIADVMELTHYHGFAGFPVVTENNELVGII--TGRDVRFVT-------DLTKSVAAVMTPKER  160 (496)
T ss_dssp             HCCC--CBCCCCBCSSSBHHHHHHHHTSSCCCEEEEECSSSBEEEEE--EHHHHTTCC-------CTTSBGGGTSEEGGG
T ss_pred             ccccccccCceEECCCCCHHHHHHHHHHcCCcEEEEEccCCEEEEEE--EHHHHhhcc-------cCCCcHHHHhcCCCC
Confidence            45677889999999999999999999999999999999999999999  999986211       111111111111124


Q ss_pred             ceEeeccCCCccccccccCCCCCCCCCccccccccCCCCCCceEEEeehhhHHHHH
Q 013310          372 SVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEEL  427 (445)
Q Consensus       372 ~~~v~~~~~i~~~~~~~~~~~~~~~~tl~g~~~~~~~~e~g~l~GIVT~~Dile~l  427 (445)
                      .+.++++.++.+..+.|.....+..-+++         ++|+++|+||.+|+++..
T Consensus       161 ~vtv~~~~~l~ea~~~m~~~~i~~lpVVD---------e~G~l~GiIT~~DIl~~~  207 (496)
T 4fxs_A          161 LATVKEGATGAEVQEKMHKARVEKILVVN---------DEFQLKGMITAKDFHKAE  207 (496)
T ss_dssp             CCEEECC----CGGGTCC---CCCEEEEC---------TTSBCCEEECCC-----C
T ss_pred             CEEECCCCCHHHHHHHHHHcCCCEEEEEc---------CCCCEEEeehHhHHHHhh
Confidence            67899999999999999887776666667         899999999999999874

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=98.38  E-value=4.1e-08  Score=102.55  Aligned_cols=116  Identities=16%  Similarity=0.062  Sum_probs=0.0

Q ss_pred             cccCCceeCCCCCHHHHHHHHhhCCCeEEEEEccC---CCccCCCCCCCCCcccccccCCCCCCCCcccccccccCCCce
Q 013310          297 SIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAK---GKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTESV  373 (445)
Q Consensus       297 m~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~---G~~~Giv~~T~~di~~~i~~~~~~~~~~~~~~~~~~~~~~~~  373 (445)
                      |.++++++++++++.++++.|.+++.+.+||+|+.   |+++|+|  |.+|+...      ......+....+......+
T Consensus       103 M~~~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~~~~g~lvGiV--t~~Dl~~~------~~~~~~~V~diM~~~~~~~  174 (503)
T 1me8_A          103 FVVSDSNVKPDQTFADVLAISQRTTHNTVAVTDDGTPHGVLLGLV--TQRDYPID------LTQTETKVSDMMTPFSKLV  174 (503)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccCCeEECCCCcHHHHHHHHHHcCceEEEEEECCCcCCeEEEEE--EHHHHHhh------hccccCcHHHHhCCCCCCE
Confidence            88899999999999999999999999999999987   9999999  99999853      0111112112222223367


Q ss_pred             EeeccCCCccccccccCCCCCCCCCccccccccCCCCCCceEEEeehhhHHHHHhc
Q 013310          374 VVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELLQ  429 (445)
Q Consensus       374 ~v~~~~~i~~~~~~~~~~~~~~~~tl~g~~~~~~~~e~g~l~GIVT~~Dile~l~g  429 (445)
                      .++++.++.+..+.|........-+++         ++|+++||||.+||++.+.+
T Consensus       175 tv~~~~sl~ea~~~m~~~~i~~lpVVD---------e~g~lvGiIT~~Dil~~~~~  221 (503)
T 1me8_A          175 TAHQDTKLSEANKIIWEKKLNALPIID---------DDQHLRYIVFRKDYDRSQVC  221 (503)
T ss_dssp             --------------------------------------------------------
T ss_pred             EEcCCCcHHHHHHHHHHcCCCEEEEEc---------CCCeEEEEEEecHHHHhhhc
Confidence            889999999999988877666655666         78999999999999999875

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=98.36  E-value=3.9e-07  Score=80.71  Aligned_cols=41  Identities=17%  Similarity=0.213  Sum_probs=38.8

Q ss_pred             CCccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEcc
Q 013310          290 ETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKA  330 (445)
Q Consensus       290 ~~~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde  330 (445)
                      +.+|+++|.++++++++++++.+|++.|.+++.+.+||+|+
T Consensus        17 ~~~V~diM~~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~   57 (170)
T 4esy_A           17 QVPIRDILTSPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQ   57 (170)
T ss_dssp             TSBGGGGCCSCCCCEETTSBHHHHHHHHHHTTCSEEEEECT
T ss_pred             CCCHHHhcCCCCcEECCcCcHHHHHHHHHHcCCeEEEEEcC
Confidence            46899999999999999999999999999999999999994

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=98.30  E-value=9.3e-08  Score=99.73  Aligned_cols=120  Identities=15%  Similarity=0.152  Sum_probs=7.1

Q ss_pred             ccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEccCCCccCCCCCCCCCcccccccCCCCCCCCcccccccccCCC
Q 013310          292 PVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTE  371 (445)
Q Consensus       292 ~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Giv~~T~~di~~~i~~~~~~~~~~~~~~~~~~~~~~  371 (445)
                      .++++|.++++++++++++.++++.|.+++.+.+||+|+.|+++|+|  |.+|+....       +...+....+.....
T Consensus        96 ~~~~iM~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~lvGiv--t~~Dl~~~~-------~~~~~v~~im~~~~~  166 (494)
T 1vrd_A           96 KTENGIIYDPITVTPDMTVKEAIDLMAEYKIGGLPVVDEEGRLVGLL--TNRDVRFEK-------NLSKKIKDLMTPREK  166 (494)
T ss_dssp             TC------------------------------------------------------------------------------
T ss_pred             hHhhcCccCCeEECCCCCHHHHHHHHHHcCceEEEEEcCCCEEEEEE--EHHHHHhhc-------CCCCcHHHHhCCCCC
Confidence            35678888999999999999999999999999999999999999999  999998521       111111111111124


Q ss_pred             ceEeeccCCCccccccccCCCCCCCCCccccccccCCCCCCceEEEeehhhHHHHHhc
Q 013310          372 SVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELLQ  429 (445)
Q Consensus       372 ~~~v~~~~~i~~~~~~~~~~~~~~~~tl~g~~~~~~~~e~g~l~GIVT~~Dile~l~g  429 (445)
                      ...++.+.++.+..+.+........-+++         ++|+++|+||..|+++.+..
T Consensus       167 ~~~v~~~~~l~ea~~~m~~~~~~~lpVVd---------~~g~lvGiIt~~Dll~~~~~  215 (494)
T 1vrd_A          167 LIVAPPDISLEKAKEILHQHRIEKLPLVS---------KDNKLVGLITIKDIMSVIEH  215 (494)
T ss_dssp             ---------------------------------------------------CHHHHTC
T ss_pred             CeEECCCCCHHHHHHHHHHcCCcEEEEEc---------CCCeEEEEEEHHHHHhhhcc
Confidence            56778888888888887765444444445         68999999999999999875

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=98.23  E-value=1.5e-06  Score=65.64  Aligned_cols=29  Identities=10%  Similarity=0.082  Sum_probs=27.6

Q ss_pred             CceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          301 IPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       301 ~~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      ++++++++++.+|++.|.+++++.+||+|
T Consensus         2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d   30 (70)
T 3ghd_A            2 AIVVQPKDTVDRVAKILSRNKAGSAVVME   30 (70)
T ss_dssp             EEEECTTCBHHHHHHHHHHTTCSEEEEEE
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEEE
Confidence            56899999999999999999999999998

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=98.23  E-value=1.5e-07  Score=98.02  Aligned_cols=118  Identities=13%  Similarity=0.083  Sum_probs=2.6

Q ss_pred             ccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEccCCCccCCCCCCCCCcccccccCCCCCCCCcccccccccCCC
Q 013310          292 PVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTE  371 (445)
Q Consensus       292 ~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Giv~~T~~di~~~i~~~~~~~~~~~~~~~~~~~~~~  371 (445)
                      .++++|..+++++++++++.++++.|.+++.+.+||+| .|+++|+|  |.+|+.....       ...+....+.....
T Consensus        89 ~~~~~m~~~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd-~g~lvGIV--t~rDl~~~~~-------~~~~V~~vMtp~~~  158 (490)
T 4avf_A           89 KHETAIVRDPVTVTPSTKIIELLQMAREYGFSGFPVVE-QGELVGIV--TGRDLRVKPN-------AGDTVAAIMTPKDK  158 (490)
T ss_dssp             HCCC----------------------------------------------------------------------------
T ss_pred             ccccCcccCceEeCCCCcHHHHHHHHHHhCCCEEEEEE-CCEEEEEE--EhHHhhhccc-------cCCcHHHHhccCCC
Confidence            46778888999999999999999999999999999999 89999999  9999853211       11111111110124


Q ss_pred             ceEeeccCCCccccccccCCCCCCCCCccccccccCCCCCCceEEEeehhhHHHHHh
Q 013310          372 SVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELL  428 (445)
Q Consensus       372 ~~~v~~~~~i~~~~~~~~~~~~~~~~tl~g~~~~~~~~e~g~l~GIVT~~Dile~l~  428 (445)
                      .+.++++.++.+..+.|.....+..-+++         ++|+++|+||.+|+++..-
T Consensus       159 ~vtv~~~~~l~ea~~~m~~~~i~~lpVVD---------e~g~lvGiIT~~Dil~~~~  206 (490)
T 4avf_A          159 LVTAREGTPLEEMKAKLYENRIEKMLVVD---------ENFYLRGLVTFRDIEKAKT  206 (490)
T ss_dssp             ---------------------------------------------------------
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEEc---------CCCcEEEEEehHHhhhhcc
Confidence            67788899999999988877666655666         8999999999999999853

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=98.07  E-value=5.2e-06  Score=73.63  Aligned_cols=56  Identities=11%  Similarity=0.105  Sum_probs=45.0

Q ss_pred             Cccccccc--cCCceeCCCCCHHHHHHHHhhCCCeEEEEEccC-CCccCCCCCCCCCcccc
Q 013310          291 TPVSAVSI--RRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAK-GKSKTLPPMTDGKKPKL  348 (445)
Q Consensus       291 ~~v~~im~--~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~-G~~~Giv~~T~~di~~~  348 (445)
                      .+++++|.  ++++++++++++.++++.|.+++.+.+||+|+. |+++|+|  |.+|+++.
T Consensus        42 ~~v~diM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~lvGiv--t~~dl~~~  100 (172)
T 3lhh_A           42 RTISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNNVDDMVGII--SAKQLLSE  100 (172)
T ss_dssp             -CTTTTSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESSSTTSEEEEE--EHHHHHHH
T ss_pred             CCHHHhCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEE--EHHHHHHH
Confidence            67889998  788999999999999999999999999999954 5555555  55555443

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=98.05  E-value=7.3e-06  Score=76.86  Aligned_cols=40  Identities=13%  Similarity=0.190  Sum_probs=37.9

Q ss_pred             CCccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          290 ETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       290 ~~~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      ..+++++|.++++++++++++.+|++.|.+++.+.+||+|
T Consensus         6 ~~~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd   45 (245)
T 3l2b_A            6 KLKVEDLEMDKIAPLAPEVSLKMAWNIMRDKNLKSIPVAD   45 (245)
T ss_dssp             CCBGGGSCCBCCCCBCTTCBHHHHHHHHHHTTCSEEEEEC
T ss_pred             cCcHHHhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEc
Confidence            3679999999999999999999999999999999999999

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=98.04  E-value=4.5e-07  Score=94.99  Aligned_cols=121  Identities=17%  Similarity=0.061  Sum_probs=62.6

Q ss_pred             ccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEcc---CCCccCCCCCCCCCcccccccCCCCCCCCccccccccc
Q 013310          292 PVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKA---KGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDE  368 (445)
Q Consensus       292 ~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde---~G~~~Giv~~T~~di~~~i~~~~~~~~~~~~~~~~~~~  368 (445)
                      .++++|.++++++++++++.++++.|.+++.+.+||+|+   .|+++|+|  |.+|+.....     .....+....+..
T Consensus       109 ~~~~im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~~lvGiV--t~~Dl~~~~~-----~~~~~~v~~vm~~  181 (514)
T 1jcn_A          109 NFEQGFITDPVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIV--TSRDIDFLAE-----KDHTTLLSEVMTP  181 (514)
T ss_dssp             TCCTTSCSSCCCCCC-----------------CEESCC--------CCEE--CTTTTC---------------------C
T ss_pred             hhhhccccCCEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCCEEEEEE--EHHHHHhhhh-----ccCCCCHHHHhCC
Confidence            466888889999999999999999999999999999998   59999999  9999975310     0111111111111


Q ss_pred             CCCceEeeccCCCccccccccCCCCCCCCCccccccccCCCCCCceEEEeehhhHHHHHh
Q 013310          369 KTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELL  428 (445)
Q Consensus       369 ~~~~~~v~~~~~i~~~~~~~~~~~~~~~~tl~g~~~~~~~~e~g~l~GIVT~~Dile~l~  428 (445)
                      ......++.+.++.+....+.....+..-+++         ++|+++|+||..|+++.+.
T Consensus       182 ~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd---------~~g~lvGiIt~~Dll~~~~  232 (514)
T 1jcn_A          182 RIELVVAPAGVTLKEANEILQRSKKGKLPIVN---------DCDELVAIIARTDLKKNRD  232 (514)
T ss_dssp             CBCCCCEETTCCSTTTTTHHHHHTCSCCCEES---------SSSCCC----CCCCSSCCC
T ss_pred             CCCCeEECCCCCHHHHHHHHHHcCCCcccEEC---------CCCeEEEEEEHHHHHHHhh
Confidence            12556788889998888887765544444455         6899999999999998764

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=98.02  E-value=4.2e-06  Score=72.67  Aligned_cols=60  Identities=22%  Similarity=0.306  Sum_probs=53.4

Q ss_pred             CcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCC
Q 013310          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP  287 (445)
Q Consensus       223 l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~  287 (445)
                      ..+.+|+++|++  ++.++++++++. ++++.|.+++++++||++ + ++++|+|+.+|+++...
T Consensus        75 ~~~~~v~~~m~~--~~~~v~~~~~l~-~~~~~m~~~~~~~lpVvd-~-g~~~Giit~~dil~~l~  134 (157)
T 4fry_A           75 SKATRVEEIMTA--KVRYVEPSQSTD-ECMALMTEHRMRHLPVLD-G-GKLIGLISIGDLVKSVI  134 (157)
T ss_dssp             SSSCBHHHHSBS--SCCCBCTTSBHH-HHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHHHH
T ss_pred             ccccCHHHHcCC--CCcEECCCCcHH-HHHHHHHHcCCCEEEEEE-C-CEEEEEEEHHHHHHHHH
Confidence            357899999986  578899999998 999999999999999998 3 79999999999988643

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=98.01  E-value=4.8e-06  Score=68.80  Aligned_cols=56  Identities=14%  Similarity=0.083  Sum_probs=47.1

Q ss_pred             ccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEccCCCccCCCCCCCCCccccc
Q 013310          292 PVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLN  349 (445)
Q Consensus       292 ~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Giv~~T~~di~~~i  349 (445)
                      +++++|.++++++++++++.++++.|.+++.+.+||+|+.|.+.|++  |.+|+.+.+
T Consensus         2 ~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~v--t~~dl~~~~   57 (122)
T 3kpb_A            2 LVKDILSKPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGII--TSWDIAKAL   57 (122)
T ss_dssp             BHHHHCCSCCCCEETTSBHHHHHHHHHHHTCSCEEEECTTSBEEEEE--CHHHHHHHH
T ss_pred             chHHhhCCCCEEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEE--EHHHHHHHH
Confidence            57789999999999999999999999999999999999766666666  666665443

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=98.00  E-value=9.8e-06  Score=69.63  Aligned_cols=57  Identities=7%  Similarity=-0.013  Sum_probs=46.4

Q ss_pred             CCcccccccc--CCceeCCCCCHHHHHHHHhhCCCeEEEEEccC-CCccCCCCCCCCCcccc
Q 013310          290 ETPVSAVSIR--RIPRVPSDMPLYDILNEFQKGSSHMAAVVKAK-GKSKTLPPMTDGKKPKL  348 (445)
Q Consensus       290 ~~~v~~im~~--~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~-G~~~Giv~~T~~di~~~  348 (445)
                      ..+++++|.+  +++++++++++.++++.|.+++.+.+||+|+. |+++|+|  |.+|+++.
T Consensus        22 ~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~lvGiv--t~~dl~~~   81 (148)
T 3lv9_A           22 EKKIREIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRKNKDDILGFV--HIRDLYNQ   81 (148)
T ss_dssp             TCBGGGTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESSSTTSEEEEE--EHHHHHHH
T ss_pred             CCCHHHccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEE--EHHHHHHH
Confidence            4689999987  89999999999999999999999999999954 5555555  55555443

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=97.98  E-value=6.9e-06  Score=71.63  Aligned_cols=63  Identities=13%  Similarity=0.202  Sum_probs=55.5

Q ss_pred             cCcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCC---CEEEEEEhhhhhccC
Q 013310          222 DLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPK---NIIGLLLVKSLLTVR  286 (445)
Q Consensus       222 ~l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~---~ivGiv~~kDll~~~  286 (445)
                      ...+.+|+++|+++.+++++++++++. ++++.|.+++++++||++++ +   +++|+|+.+|+++..
T Consensus        77 ~~~~~~v~~~m~~~~~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~~~~~vGiit~~dil~~l  142 (159)
T 3fv6_A           77 ELTSVPVHIIMTRMPNITVCRREDYVM-DIAKHLIEKQIDALPVIKDT-DKGFEVIGRVTKTNMTKIL  142 (159)
T ss_dssp             CTTTCBGGGTSEETTSCCCBCTTSBHH-HHHHHHHHHTCSEEEEEEEC-SSSEEEEEEEEHHHHHHHH
T ss_pred             cccCcCHHHHHcCCCCcEEECCCCCHH-HHHHHHHHcCCcEEEEEeCC-CcceeEEEEEEHHHHHHHH
Confidence            346678999999766788999999998 99999999999999999874 5   899999999998754

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=97.97  E-value=1.1e-06  Score=91.51  Aligned_cols=113  Identities=13%  Similarity=0.100  Sum_probs=1.3

Q ss_pred             cccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEccCCCccCCCCCCCCCcccccccCCCCCCCCcccccccccCCCc
Q 013310          293 VSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTES  372 (445)
Q Consensus       293 v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Giv~~T~~di~~~i~~~~~~~~~~~~~~~~~~~~~~~  372 (445)
                      ..+.|..+++++++++++.++++.|.+++.+.+||+|+ |+++|+|  |.+|++.       +.  ..+....  +....
T Consensus        95 ~~~~m~~~~~~v~~~~tv~ea~~~~~~~~~~~~pVvd~-~~lvGiv--t~~Dl~~-------~~--~~~v~~i--m~~~~  160 (486)
T 2cu0_A           95 AERLIVEDVITIAPDETVDFALFLMEKHGIDGLPVVED-EKVVGII--TKKDIAA-------RE--GKLVKEL--MTKEV  160 (486)
T ss_dssp             CC------------------------------------------------------------------------------
T ss_pred             hhhccccCceEECCCCCHHHHHHHHHHcCCcEEEEEEC-CEEEEEE--EHHHhcc-------CC--CCCHHHH--ccCCC
Confidence            34578888999999999999999999999999999998 9999999  9999875       00  1111111  12245


Q ss_pred             eEeeccCCCccccccccCCCCCCCCCccccccccCCCCCCceEEEeehhhHHHHHh
Q 013310          373 VVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELL  428 (445)
Q Consensus       373 ~~v~~~~~i~~~~~~~~~~~~~~~~tl~g~~~~~~~~e~g~l~GIVT~~Dile~l~  428 (445)
                      +.++++.++.+..+.|........-+++         ++|+++|+||.+|+++.+-
T Consensus       161 ~~v~~~~~l~eal~~m~~~~~~~lpVVd---------e~g~lvGiiT~~Dil~~~~  207 (486)
T 2cu0_A          161 ITVPESIEVEEALKIMIENRIDRLPVVD---------ERGKLVGLITMSDLVARKK  207 (486)
T ss_dssp             -------------------------------------------------------C
T ss_pred             eEECCcCcHHHHHHHHHHcCCCEEEEEe---------cCCeEEEEEEHHHHHHhhh
Confidence            6788888998888888876655555666         7899999999999999864

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=97.96  E-value=1.2e-05  Score=69.11  Aligned_cols=48  Identities=21%  Similarity=0.188  Sum_probs=40.6

Q ss_pred             Ccccccccc--CCceeCCCCCHHHHHHHHhhCCCeEEEEEccCCCccCCC
Q 013310          291 TPVSAVSIR--RIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLP  338 (445)
Q Consensus       291 ~~v~~im~~--~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Giv  338 (445)
                      .+++++|.+  +++++++++++.++++.|.+++.+.+||+|+.|+++|+|
T Consensus        28 ~~v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Giv   77 (149)
T 3k2v_A           28 LRVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDDDMNIIGIF   77 (149)
T ss_dssp             SBGGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECTTCBEEEEE
T ss_pred             cCHHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECCCCcEEEEe
Confidence            478999988  899999999999999999999999999999433444444

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=97.96  E-value=7.3e-06  Score=68.60  Aligned_cols=58  Identities=9%  Similarity=0.003  Sum_probs=52.1

Q ss_pred             CCccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEccCCCccCCCCCCCCCcccccc
Q 013310          290 ETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNE  350 (445)
Q Consensus       290 ~~~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Giv~~T~~di~~~i~  350 (445)
                      +.+++++|.++++++++++++.++++.|.+++.+.+||+|+ |++.|++  |.+|+.+...
T Consensus         4 s~~v~~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~Giv--t~~dl~~~~~   61 (128)
T 3gby_A            4 SVTFSYLAETDYPVFTLGGSTADAARRLAASGCACAPVLDG-ERYLGMV--HLSRLLEGRK   61 (128)
T ss_dssp             TCBGGGGCBCCSCCEETTSBHHHHHHHHHHHTCSEEEEEET-TEEEEEE--EHHHHHTTCS
T ss_pred             ceEHHHhhcCCcceECCCCCHHHHHHHHHHCCCcEEEEEEC-CEEEEEE--EHHHHHHHHh
Confidence            46889999999999999999999999999999999999998 8888998  8888876544

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=97.95  E-value=1.4e-05  Score=67.59  Aligned_cols=55  Identities=9%  Similarity=0.100  Sum_probs=45.7

Q ss_pred             CCccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEccCCCccCCCCCCCCCcc
Q 013310          290 ETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKP  346 (445)
Q Consensus       290 ~~~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Giv~~T~~di~  346 (445)
                      ..+++++|.++++++++++++.++++.|.+++.+.+||+|+.|+++|+|  |.+|++
T Consensus         6 ~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Giv--t~~dl~   60 (138)
T 2yzi_A            6 KAPIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFF--TKSDII   60 (138)
T ss_dssp             TSBGGGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEE--EHHHHH
T ss_pred             hhhHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEE--eHHHHH
Confidence            3678999999999999999999999999999999999999555555555  555554

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=97.93  E-value=1.1e-05  Score=68.40  Aligned_cols=59  Identities=12%  Similarity=0.184  Sum_probs=52.0

Q ss_pred             cccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCC
Q 013310          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP  287 (445)
Q Consensus       224 ~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~  287 (445)
                      .+.+++++|+|   +.++++++++. ++++.|.+++.+.+||+|++ ++++|+|+.+|+++...
T Consensus        68 ~~~~v~~~m~~---~~~v~~~~~l~-~~~~~m~~~~~~~~~Vvd~~-g~lvGiit~~Dil~~l~  126 (136)
T 3lfr_A           68 DSDDVKKLLRP---ATFVPESKRLN-VLLREFRANHNHMAIVIDEY-GGVAGLVTIEDVLEQIV  126 (136)
T ss_dssp             GGCCGGGTCBC---CCEEETTCBHH-HHHHHHHHHTCCEEEEECTT-SCEEEEEEHHHHHTTC-
T ss_pred             CCcCHHHHcCC---CeEECCCCcHH-HHHHHHHhcCCeEEEEEeCC-CCEEEEEEHHHHHHHHh
Confidence            45789999975   67899999998 99999999999999999865 79999999999998653

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=97.91  E-value=1.4e-05  Score=69.78  Aligned_cols=39  Identities=13%  Similarity=0.070  Sum_probs=36.9

Q ss_pred             CccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          291 TPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       291 ~~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      .+++++|.++++++++++++.+|++.|.+++.+.+||+|
T Consensus         5 ~~v~dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd   43 (160)
T 2o16_A            5 IKVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVD   43 (160)
T ss_dssp             CBGGGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             CcHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEc
Confidence            578899988999999999999999999999999999999

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=97.90  E-value=9.5e-06  Score=68.13  Aligned_cols=59  Identities=12%  Similarity=0.107  Sum_probs=52.7

Q ss_pred             CCccccccc--cCCceeCCCCCHHHHHHHHhhCCCeEEEEEccC-CCccCCCCCCCCCcccccc
Q 013310          290 ETPVSAVSI--RRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAK-GKSKTLPPMTDGKKPKLNE  350 (445)
Q Consensus       290 ~~~v~~im~--~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~-G~~~Giv~~T~~di~~~i~  350 (445)
                      +.+++++|.  ++++++++++++.++++.|.+++.+.+||+|+. |+++|+|  |.+|+++...
T Consensus         4 ~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Giv--t~~dl~~~~~   65 (129)
T 3jtf_A            4 ERTVADIMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYEDDRDNIIGIL--LAKDLLRYML   65 (129)
T ss_dssp             CCBHHHHCEEGGGCCCEETTSCHHHHHHHHHHSCCSEEEEESSSTTCEEEEE--EGGGGGGGGT
T ss_pred             CCCHHHhCccHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCcEEEEE--EHHHHHhHhc
Confidence            467889987  678899999999999999999999999999986 8999999  9999987654

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=97.89  E-value=1.3e-05  Score=66.40  Aligned_cols=59  Identities=22%  Similarity=0.304  Sum_probs=53.0

Q ss_pred             CcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccC
Q 013310          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR  286 (445)
Q Consensus       223 l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~  286 (445)
                      +.+.+++++|++  ++.++++++++. ++++.|.+++++++||+++  ++++|+++.+|+++..
T Consensus        62 ~~~~~v~~~m~~--~~~~v~~~~~l~-~~~~~~~~~~~~~l~Vvd~--~~~~Gvit~~dl~~~l  120 (125)
T 1pbj_A           62 LAEVKVWEVMER--DLVTISPRATIK-EAAEKMVKNVVWRLLVEED--DEIIGVISATDILRAK  120 (125)
T ss_dssp             TTTSBHHHHCBC--GGGEECTTSCHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHH
T ss_pred             ccccCHHHHcCC--CCeEECCCCCHH-HHHHHHHhcCCcEEEEEEC--CEEEEEEEHHHHHHHH
Confidence            457789999986  578899999998 9999999999999999986  7999999999998754

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=97.87  E-value=1.2e-05  Score=67.33  Aligned_cols=58  Identities=9%  Similarity=0.183  Sum_probs=51.2

Q ss_pred             cccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccC
Q 013310          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR  286 (445)
Q Consensus       224 ~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~  286 (445)
                      .+.+++++|.+   +.++++++++. ++++.|.+++.+++||+|++ ++++|+|+.+|+++..
T Consensus        67 ~~~~v~~~m~~---~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~~~Giit~~dll~~l  124 (127)
T 3nqr_A           67 EAFSMDKVLRT---AVVVPESKRVD-RMLKEFRSQRYHMAIVIDEF-GGVSGLVTIEDILELI  124 (127)
T ss_dssp             CCCCHHHHCBC---CCEEETTCBHH-HHHHHHHHTTCCEEEEECTT-SCEEEEEEHHHHHHHC
T ss_pred             CCCCHHHHcCC---CeEECCCCcHH-HHHHHHHhcCCeEEEEEeCC-CCEEEEEEHHHHHHHH
Confidence            45689999964   56899999998 99999999999999999865 7999999999998754

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=97.87  E-value=2.7e-05  Score=69.63  Aligned_cols=61  Identities=11%  Similarity=0.169  Sum_probs=53.8

Q ss_pred             CcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCC
Q 013310          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP  287 (445)
Q Consensus       223 l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~  287 (445)
                      ..+.+++++|.+  +++++++++++. ++++.|.+++.+++||++++ ++++|+|+.+|+++...
T Consensus        72 ~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~~~Givt~~dll~~~~  132 (184)
T 1pvm_A           72 PDEVPIRLVMRK--PIPKVKSDYDVK-DVAAYLSENGLERCAVVDDP-GRVVGIVTLTDLSRYLS  132 (184)
T ss_dssp             GGGSBGGGTSBS--SCCEEETTCBHH-HHHHHHHHHTCSEEEEECTT-CCEEEEEEHHHHTTTSC
T ss_pred             cccCCHHHHhCC--CCcEECCCCCHH-HHHHHHHHcCCcEEEEEcCC-CeEEEEEEHHHHHHHHH
Confidence            456789999985  577899999998 99999999999999999865 79999999999987643

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=97.86  E-value=1.3e-05  Score=67.25  Aligned_cols=58  Identities=22%  Similarity=0.340  Sum_probs=51.8

Q ss_pred             ccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccC
Q 013310          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR  286 (445)
Q Consensus       225 ~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~  286 (445)
                      +.+++++|++  ++.++++++++. ++++.|.+++.+++||++++ ++++|+++.+|+++..
T Consensus        66 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~l~Vvd~~-g~~~Giit~~dll~~~  123 (133)
T 2ef7_A           66 ETKAEEFMTA--SLITIREDSPIT-GALALMRQFNIRHLPVVDDK-GNLKGIISIRDITRAI  123 (133)
T ss_dssp             TCBGGGTSEE--CCCCEETTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHH
T ss_pred             ccCHHHHcCC--CCEEECCCCCHH-HHHHHHHHcCCCEEEEECCC-CeEEEEEEHHHHHHHH
Confidence            4789999986  577899999998 99999999999999999865 7999999999998754

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=97.85  E-value=9.5e-06  Score=69.47  Aligned_cols=60  Identities=18%  Similarity=0.396  Sum_probs=52.3

Q ss_pred             CcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccC
Q 013310          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR  286 (445)
Q Consensus       223 l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~  286 (445)
                      ..+.+|+++|.+  +++++++++++. ++++.|.+++++++||++++ ++++|+|+.+|+++..
T Consensus        82 ~~~~~v~~~m~~--~~~~v~~~~~l~-~a~~~~~~~~~~~l~Vvd~~-g~~~Giit~~dil~~~  141 (152)
T 4gqw_A           82 TNGKLVGDLMTP--APLVVEEKTNLE-DAAKILLETKYRRLPVVDSD-GKLVGIITRGNVVRAA  141 (152)
T ss_dssp             --CCBHHHHSEE--SCCCEESSSBHH-HHHHHHHHSSCCEEEEECTT-SBEEEEEEHHHHHHHH
T ss_pred             hccccHHHhcCC--CceEECCCCcHH-HHHHHHHHCCCCEEEEECCC-CcEEEEEEHHHHHHHH
Confidence            356789999986  567899999998 99999999999999999865 7999999999999764

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=97.85  E-value=2.2e-05  Score=66.21  Aligned_cols=54  Identities=11%  Similarity=0.086  Sum_probs=45.0

Q ss_pred             CCccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEccCCCccCCCCCCCCCc
Q 013310          290 ETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKK  345 (445)
Q Consensus       290 ~~~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Giv~~T~~di  345 (445)
                      +.+++++|.+++.++++++++.++++.|.+++.+.+||+|+.|+++|++  |.+|+
T Consensus         7 ~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Giv--t~~dl   60 (138)
T 2p9m_A            7 NIKVKDVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIV--TTTDI   60 (138)
T ss_dssp             TCBGGGTSBCSCCCEETTSBHHHHHHHHHHHTCCEEEEECTTCBEEEEE--EHHHH
T ss_pred             cCCHHHhhcCCceEECCCCcHHHHHHHHHHCCCcEEEEECCCCeEEEEE--EHHHH
Confidence            3678899988999999999999999999999999999999555555555  55555

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=97.85  E-value=1.9e-05  Score=66.55  Aligned_cols=59  Identities=24%  Similarity=0.383  Sum_probs=52.7

Q ss_pred             CcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccC
Q 013310          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR  286 (445)
Q Consensus       223 l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~  286 (445)
                      ..+.+++++|++  ++.++++++++. ++++.|.+++.+++||++ + ++++|+|+.+|+++..
T Consensus        71 ~~~~~v~~~m~~--~~~~v~~~~~l~-~~~~~m~~~~~~~lpVvd-~-g~~~Giit~~dll~~~  129 (135)
T 2rc3_A           71 VKDTQVKEIMTR--QVAYVDLNNTNE-DCMALITEMRVRHLPVLD-D-GKVIGLLSIGDLVKDA  129 (135)
T ss_dssp             GGGSBGGGTSBC--SCCCBCTTCBHH-HHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHHH
T ss_pred             cccCCHHHhccC--CCeEECCCCcHH-HHHHHHHHhCCCEEEEEe-C-CEEEEEEEHHHHHHHH
Confidence            457789999986  578899999998 999999999999999998 4 7999999999998754

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=97.84  E-value=1.4e-05  Score=68.63  Aligned_cols=48  Identities=19%  Similarity=0.084  Sum_probs=40.0

Q ss_pred             Cccccccc--cCCceeCCCCCHHHHHHHHhhCCCeEEEEEccCCCccCCC
Q 013310          291 TPVSAVSI--RRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLP  338 (445)
Q Consensus       291 ~~v~~im~--~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Giv  338 (445)
                      .+++++|.  ++++++++++++.++++.|.+++.+.+||+|+.|+++|+|
T Consensus        15 ~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Giv   64 (150)
T 3lqn_A           15 IFVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLI   64 (150)
T ss_dssp             CBHHHHSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEE
T ss_pred             CChhhcccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECCCCCEEEEE
Confidence            67889987  5689999999999999999999999999999444444444

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=97.84  E-value=1.5e-05  Score=66.96  Aligned_cols=58  Identities=16%  Similarity=0.179  Sum_probs=46.2

Q ss_pred             CCccccccc--cCCceeCCCCCHHHHHHHHhhCCCeEEEEEccC-CCccCCCCCCCCCccccc
Q 013310          290 ETPVSAVSI--RRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAK-GKSKTLPPMTDGKKPKLN  349 (445)
Q Consensus       290 ~~~v~~im~--~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~-G~~~Giv~~T~~di~~~i  349 (445)
                      +.+++++|.  .+++++++++++.++++.|.+++.+.+||+|+. |++.|++  |.+|+++..
T Consensus         5 ~~~v~~iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Giv--t~~dl~~~~   65 (130)
T 3i8n_A            5 DVPVTQVMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQKDNIIGFV--HRLELFKMQ   65 (130)
T ss_dssp             --CCTTTSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESSSTTCEEEEC--CHHHHHHHH
T ss_pred             cCCHhhCCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCcEEEEE--EHHHHHHHH
Confidence            367889987  445689999999999999999999999999965 6677777  666666544

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=97.83  E-value=2.1e-05  Score=66.85  Aligned_cols=54  Identities=11%  Similarity=0.170  Sum_probs=43.2

Q ss_pred             CccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEccCC--CccCCCCCCCCCcc
Q 013310          291 TPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKG--KSKTLPPMTDGKKP  346 (445)
Q Consensus       291 ~~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G--~~~Giv~~T~~di~  346 (445)
                      .+++++|.+++.++++++++.++++.|.+++.+.+||+|+.|  +++|++  |.+|++
T Consensus         5 ~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~Giv--t~~dl~   60 (141)
T 2rih_A            5 IRTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVV--SERDIL   60 (141)
T ss_dssp             CBGGGGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEE--EHHHHH
T ss_pred             eEHHHHhcCCCeEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCcceeEEEE--EHHHHH
Confidence            568899999999999999999999999999999999999444  444444  444443

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=97.83  E-value=2.5e-05  Score=68.30  Aligned_cols=40  Identities=5%  Similarity=-0.081  Sum_probs=35.5

Q ss_pred             Cccccccc--cCCceeCCCCCHHHHHHHHhhCCCeEEEEEcc
Q 013310          291 TPVSAVSI--RRIPRVPSDMPLYDILNEFQKGSSHMAAVVKA  330 (445)
Q Consensus       291 ~~v~~im~--~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde  330 (445)
                      .+++++|+  .++.++++++++.+|++.|.+++.+.+||+|+
T Consensus        15 ~~~~~iM~P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~   56 (156)
T 3k6e_A           15 GQEETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTD   56 (156)
T ss_dssp             TTGGGGEEETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC
T ss_pred             ccHHHhCcchhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcC
Confidence            35678885  57889999999999999999999999999993

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=97.83  E-value=2.7e-05  Score=73.74  Aligned_cols=40  Identities=15%  Similarity=0.277  Sum_probs=38.2

Q ss_pred             CCccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          290 ETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       290 ~~~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      +.+|+++|.+++++|.+++++.++.+.|.+++.+.+||||
T Consensus        12 ~~~v~diMt~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd   51 (250)
T 2d4z_A           12 NIQVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVD   51 (250)
T ss_dssp             SCBTTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEES
T ss_pred             CCChHHhcCCCCeEECCCCCHHHHHHHHHhcCCCEEEEEe
Confidence            4689999999999999999999999999999999999998

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=97.81  E-value=2.3e-05  Score=67.81  Aligned_cols=57  Identities=16%  Similarity=0.132  Sum_probs=51.3

Q ss_pred             ccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccC
Q 013310          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR  286 (445)
Q Consensus       225 ~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~  286 (445)
                      +.+|+++| +  ++.++++++++. ++++.|.+++.+++||++++ ++++|+|+.+|+++..
T Consensus        85 ~~~v~~~m-~--~~~~v~~~~~l~-~~~~~m~~~~~~~lpVvd~~-g~~vGivt~~dil~~l  141 (153)
T 3oco_A           85 KAKISTIM-R--DIVSVPENMKVP-DVMEEMSAHRVPMAIVIDEY-GGTSGIITDKDVYEEL  141 (153)
T ss_dssp             TSBGGGTC-B--CCEEEETTSBHH-HHHHHHHHTTCSCEEEECTT-SCEEEEECHHHHHHHH
T ss_pred             CCcHHHHh-C--CCeEECCCCCHH-HHHHHHHHcCCcEEEEEeCC-CCEEEEeeHHHHHHHH
Confidence            57899999 3  578999999998 99999999999999999865 7999999999998764

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=97.80  E-value=2.8e-05  Score=67.19  Aligned_cols=57  Identities=16%  Similarity=0.050  Sum_probs=46.0

Q ss_pred             CCcccccccc--CCceeCCCCCHHHHHHHHhhCCCeEEEEEccCCCccCCCCCCCCCcccc
Q 013310          290 ETPVSAVSIR--RIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKL  348 (445)
Q Consensus       290 ~~~v~~im~~--~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Giv~~T~~di~~~  348 (445)
                      ..+++++|.+  +++++++++++.++++.|.+++.+.+||+|+.|+++|+|  |.+|+++.
T Consensus        10 ~~~v~~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~Giv--t~~dl~~~   68 (157)
T 2emq_A           10 QMTVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLI--SMTMMMDA   68 (157)
T ss_dssp             CCBSTTTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECTTCCEEEEE--EHHHHHHH
T ss_pred             hCcHHhhccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcCCCCEEEEe--eHHHHHHH
Confidence            3678899876  889999999999999999999999999999655555555  55555433

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=97.80  E-value=1.6e-05  Score=66.75  Aligned_cols=60  Identities=23%  Similarity=0.355  Sum_probs=53.2

Q ss_pred             CcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCC
Q 013310          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP  287 (445)
Q Consensus       223 l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~  287 (445)
                      ..+.+++++|++  ++.++++++++. ++++.|.+++.+++||+++  ++++|+++.+|+++...
T Consensus        71 ~~~~~v~~~m~~--~~~~v~~~~~l~-~~~~~m~~~~~~~l~Vvd~--g~~~Giit~~dil~~l~  130 (133)
T 1y5h_A           71 PNTATAGELARD--SIYYVDANASIQ-EMLNVMEEHQVRRVPVISE--HRLVGIVTEADIARHLP  130 (133)
T ss_dssp             TTTSBHHHHHTT--CCCCEETTCCHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHTCC
T ss_pred             ccccCHHHHhcC--CCEEECCCCCHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHHHHHHH
Confidence            356789999986  577899999998 9999999999999999986  79999999999987643

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=97.80  E-value=2.8e-05  Score=67.55  Aligned_cols=40  Identities=15%  Similarity=0.210  Sum_probs=37.6

Q ss_pred             CCccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          290 ETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       290 ~~~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      ..+++++|.++++++++++++.++++.|.+++.+.+||+|
T Consensus        12 ~~~v~dim~~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd   51 (164)
T 2pfi_A           12 HVRVEHFMNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVE   51 (164)
T ss_dssp             SCBHHHHCBCCCCCEETTCBHHHHHHHHHTCCCSEEEEES
T ss_pred             CCCHHHHcCCCCeEECCCCcHHHHHHHHHhCCCCceeEEe
Confidence            4678999999999999999999999999999999999998

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=97.78  E-value=1.2e-05  Score=71.03  Aligned_cols=61  Identities=23%  Similarity=0.395  Sum_probs=53.9

Q ss_pred             cCcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccC
Q 013310          222 DLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR  286 (445)
Q Consensus       222 ~l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~  286 (445)
                      ...+.+|+++|++  +++++++++++. ++++.|.+++++++||++++ ++++|+|+.+|+++..
T Consensus        94 ~~~~~~v~~~m~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~~vGiit~~dil~~~  154 (180)
T 3sl7_A           94 KTYGKVVGDLMTP--SPLVVRDSTNLE-DAARLLLETKFRRLPVVDAD-GKLIGILTRGNVVRAA  154 (180)
T ss_dssp             TTTTCBHHHHSEE--SCCCEETTSBHH-HHHHHHTTSTTCEEEEECTT-CBEEEEEEHHHHHHHH
T ss_pred             ccccccHHHHhCC--CceEeCCCCcHH-HHHHHHHHcCCCEEEEECCC-CeEEEEEEHHHHHHHH
Confidence            4567889999986  567899999998 99999999999999999865 8999999999998764

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=97.77  E-value=3.1e-05  Score=67.85  Aligned_cols=60  Identities=20%  Similarity=0.279  Sum_probs=53.8

Q ss_pred             CcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCC
Q 013310          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP  287 (445)
Q Consensus       223 l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~  287 (445)
                      ..+.+|+++|++  +++++++++++. ++++.|.+++++++||+++  ++++|+|+.+|+++...
T Consensus        90 ~~~~~v~~~m~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~--g~~~Giit~~dil~~~~  149 (165)
T 3fhm_A           90 SLQQSVSVAMTK--NVVRCQHNSTTD-QLMEIMTGGRFRHVPVEEN--GRLAGIISIGDVVKARI  149 (165)
T ss_dssp             GGTSBGGGTSBS--SCCCBCTTCBHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHTT
T ss_pred             cccCCHHHHhcC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHHHHHHH
Confidence            456789999985  678899999998 9999999999999999987  79999999999998754

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=97.77  E-value=1.5e-05  Score=67.16  Aligned_cols=57  Identities=16%  Similarity=0.138  Sum_probs=50.0

Q ss_pred             ccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccC
Q 013310          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR  286 (445)
Q Consensus       225 ~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~  286 (445)
                      ..+++++|.   ++.++++++++. ++++.|.+++.+.+||+|++ ++++|+++.+|+++..
T Consensus        69 ~~~v~~~m~---~~~~v~~~~~l~-~~~~~m~~~~~~~~~Vvd~~-g~lvGiit~~Dil~~l  125 (130)
T 3hf7_A           69 KEIMLRAAD---EIYFVPEGTPLS-TQLVKFQRNKKKVGLVVDEY-GDIQGLVTVEDILEEI  125 (130)
T ss_dssp             HHHHHHHSB---CCCEEETTCBHH-HHHHHHHHHCCCEEEEECTT-SCEEEEEEHHHHHHHH
T ss_pred             hhhHHHhcc---CCeEeCCCCcHH-HHHHHHHhcCCeEEEEEcCC-CCEEEEeeHHHHHHHH
Confidence            457899994   367899999998 99999999999999999865 7999999999998753

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=97.77  E-value=1.5e-05  Score=69.23  Aligned_cols=60  Identities=23%  Similarity=0.330  Sum_probs=52.9

Q ss_pred             cCcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccC
Q 013310          222 DLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR  286 (445)
Q Consensus       222 ~l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~  286 (445)
                      ...+.+++++|++   ++++++++++. ++++.|.+++++++||++++ ++++|+|+.+|+++..
T Consensus        92 ~~~~~~v~~im~~---~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~~vGiit~~dll~~l  151 (157)
T 1o50_A           92 RLIAKNASEIMLD---PVYVHMDTPLE-EALKLMIDNNIQEMPVVDEK-GEIVGDLNSLEILLAL  151 (157)
T ss_dssp             CCSSCBHHHHCBC---CCCBCTTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHH
T ss_pred             HHcCCcHHHHcCC---CeEECCCCCHH-HHHHHHHHCCCcEEEEEcCC-CEEEEEEEHHHHHHHH
Confidence            3467889999985   67899999998 99999999999999999854 7999999999998753

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=97.74  E-value=2.6e-05  Score=67.79  Aligned_cols=48  Identities=17%  Similarity=0.127  Sum_probs=40.5

Q ss_pred             Ccccccccc--CCceeCCCCCHHHHHHHHhhCCCeEEEEEccCCCccCCC
Q 013310          291 TPVSAVSIR--RIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLP  338 (445)
Q Consensus       291 ~~v~~im~~--~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Giv  338 (445)
                      .+++++|.+  +++++++++++.++++.|.+++.+.+||+|+.|+++|+|
T Consensus        14 ~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~lvGiv   63 (159)
T 1yav_A           14 ATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLI   63 (159)
T ss_dssp             CBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEE
T ss_pred             hhHHHHhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECCCCCEEEEe
Confidence            678899877  899999999999999999999999999999444444444

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=97.74  E-value=5.3e-05  Score=64.14  Aligned_cols=39  Identities=10%  Similarity=0.384  Sum_probs=35.2

Q ss_pred             Ccccc---ccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          291 TPVSA---VSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       291 ~~v~~---im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      .++++   +|.++++++++++++.++++.|.+++.+.+||+|
T Consensus         8 ~~v~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd   49 (144)
T 2nyc_A            8 IPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIID   49 (144)
T ss_dssp             SBGGGSSCCBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             cchhhcCCCCCCCceEECCCCcHHHHHHHHHHcCcceeeEEc
Confidence            45666   7778899999999999999999999999999999

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=97.73  E-value=4.4e-05  Score=79.65  Aligned_cols=112  Identities=18%  Similarity=0.165  Sum_probs=84.2

Q ss_pred             CcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCCCCccccccccCCc
Q 013310          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIP  302 (445)
Q Consensus       223 l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~im~~~~~  302 (445)
                      -.+.+|+++|++ .++++++++.++. ++++.|.+++...+||+|++ ++++|+|+.+|+++..... ...++.+.+..+
T Consensus       172 ~~~~~V~~vM~~-~~~vtv~~~~~l~-eal~~m~~~~i~~lpVVDe~-g~l~GiIT~~Dil~~~~~p-~a~~D~~~rl~V  247 (511)
T 3usb_A          172 DYSIKISDVMTK-EQLITAPVGTTLS-EAEKILQKYKIEKLPLVDNN-GVLQGLITIKDIEKVIEFP-NSAKDKQGRLLV  247 (511)
T ss_dssp             CSSSBHHHHCCC-CCCCCEETTCCHH-HHHHHHHHHTCSEEEEECTT-SBEEEEEEHHHHHHHHHCT-TCCBCTTSCBCC
T ss_pred             cCCCcHHHhccc-CCCEEECCCCCHH-HHHHHHHHcCCCEEEEEeCC-CCEeeeccHHHHHHhhhcc-cchhhhccceee
Confidence            356789999996 4688999999998 99999999999999999875 8999999999999864322 233444433333


Q ss_pred             --eeCCCCCHHHHHHHHhhCCCeEEEEEccCCCccCCC
Q 013310          303 --RVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLP  338 (445)
Q Consensus       303 --~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Giv  338 (445)
                        .+.......+.++.+.+.+.+.+.|-..+|...|++
T Consensus       248 ~aavg~~~d~~era~aLveaGvd~I~Id~a~g~~~~v~  285 (511)
T 3usb_A          248 GAAVGVTADAMTRIDALVKASVDAIVLDTAHGHSQGVI  285 (511)
T ss_dssp             EEEECSSTTHHHHHHHHHHTTCSEEEEECSCTTSHHHH
T ss_pred             eeeeeeccchHHHHHHHHhhccceEEecccccchhhhh
Confidence              344445567778888899999888876555544444

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=97.72  E-value=2.9e-05  Score=67.54  Aligned_cols=55  Identities=9%  Similarity=0.145  Sum_probs=49.5

Q ss_pred             cccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhh
Q 013310          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLL  283 (445)
Q Consensus       224 ~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll  283 (445)
                      .+.+++++|+|   +.++++++++. ++++.|.+++.+.+||+|++ ++++|+|+.+|++
T Consensus       101 ~~~~v~~im~~---~~~v~~~~~l~-~a~~~m~~~~~~~~~Vvd~~-g~~~Givt~~Dil  155 (156)
T 3oi8_A          101 EQFHLKSILRP---AVFVPEGKSLT-ALLKEFREQRNHMAIVIDEY-GGTSGLVTFEDII  155 (156)
T ss_dssp             GGCCHHHHCBC---CCEEETTSBHH-HHHHHHHHTTCCEEEEECTT-SSEEEEEEHHHHC
T ss_pred             CcccHHHHcCC---CEEECCCCCHH-HHHHHHHhcCCeEEEEECCC-CCEEEEEEHHHhc
Confidence            45789999975   67899999998 99999999999999999875 7999999999986

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=97.72  E-value=5.6e-05  Score=67.20  Aligned_cols=59  Identities=8%  Similarity=0.048  Sum_probs=47.8

Q ss_pred             CCCccccccc--cCCceeCCCCCHHHHHHHHhhCCCeEEEEEccC-CCccCCCCCCCCCccccc
Q 013310          289 TETPVSAVSI--RRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAK-GKSKTLPPMTDGKKPKLN  349 (445)
Q Consensus       289 ~~~~v~~im~--~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~-G~~~Giv~~T~~di~~~i  349 (445)
                      ...+++++|.  ++++++++++++.++++.|.+++.+.+||+|+. |+++|+|  |.+|++...
T Consensus        34 ~~~~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~lvGiv--t~~Dl~~~~   95 (173)
T 3ocm_A           34 AERSIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSLDEVVGIG--RAKDLVADL   95 (173)
T ss_dssp             TTSCSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESSSTTSEEEEE--EHHHHHHHH
T ss_pred             CCCCHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCCCCCEEEEE--EHHHHHHHH
Confidence            3478999986  468899999999999999999999999999965 6666666  666665443

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=97.71  E-value=3.2e-05  Score=70.88  Aligned_cols=61  Identities=15%  Similarity=0.194  Sum_probs=53.8

Q ss_pred             CcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCC
Q 013310          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP  287 (445)
Q Consensus       223 l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~  287 (445)
                      ..+.+|+++|++  +++++++++++. ++++.|.+++...+||+|++ ++++|+|+.+|++....
T Consensus       113 ~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVVD~~-g~lvGiIT~~Dil~~i~  173 (205)
T 3kxr_A          113 EPHEPLISLLSE--DSRALTANTTLL-DAAEAIEHSREIELPVIDDA-GELIGRVTLRAATALVR  173 (205)
T ss_dssp             CTTSBGGGGCCS--SCCCEETTSCHH-HHHHHHHTSSCSEEEEECTT-SBEEEEEEHHHHHHHHH
T ss_pred             CCcchHHHHhcC--CCeEECCCCCHH-HHHHHHHhcCCCEEEEEcCC-CeEEEEEEHHHHHHHHH
Confidence            356789999975  578899999998 99999999999999999875 79999999999987643

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=97.64  E-value=7.3e-06  Score=84.41  Aligned_cols=111  Identities=14%  Similarity=0.095  Sum_probs=0.4

Q ss_pred             cccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEcc---CCCccCCCCCCCCCcccccccCCCCCCCCcccccccccCCC
Q 013310          295 AVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKA---KGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTE  371 (445)
Q Consensus       295 ~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde---~G~~~Giv~~T~~di~~~i~~~~~~~~~~~~~~~~~~~~~~  371 (445)
                      ..|..+++++.++.++.|+++.|.++++.-+||+|+   .|+++|||  |.+|+-.+        +..++..+.+  ...
T Consensus       142 ~g~i~dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~~~kLvGIv--T~RD~rf~--------d~~~~V~evM--T~~  209 (556)
T 4af0_A          142 NGFITDPLCLGPDATVGDVLEIKAKFGFCGVPITETGEPDSKLLGIV--TGRDVQFQ--------DAETPIKSVM--TTE  209 (556)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             cCccCCCeEcCCCCCHHHHHHHHHHhCCCccccccccCcCCEEEEEE--eccccccc--------ccceEhhhhc--ccc
Confidence            346788999999999999999999999999999986   68999999  99997421        1122222222  223


Q ss_pred             ceEeeccCCCccccccccCCCCCCCCCccccccccCCCCCCceEEEeehhhHHHH
Q 013310          372 SVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEE  426 (445)
Q Consensus       372 ~~~v~~~~~i~~~~~~~~~~~~~~~~tl~g~~~~~~~~e~g~l~GIVT~~Dile~  426 (445)
                      -+.++...++.+.++.+....-+-.-+++         ++|+++|+||..|+.+.
T Consensus       210 lvt~~~~~~leeA~~iL~~~kieklpVVd---------~~g~LvGlIT~kDi~k~  255 (556)
T 4af0_A          210 VVTGSSPITLEKANSLLRETKKGKLPIVD---------SNGHLVSLVARSDLLKN  255 (556)
T ss_dssp             -------------------------------------------------------
T ss_pred             eEEecCCCCHHHHHHHHHHccccceeEEc---------cCCcEEEEEEechhhhh
Confidence            56677778888888877766555444555         78999999999999876

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=97.60  E-value=6.8e-05  Score=66.52  Aligned_cols=39  Identities=21%  Similarity=0.141  Sum_probs=35.2

Q ss_pred             CCccccccccC----Ccee--CCCCCHHHHHHHHhhCCCeEEEEE
Q 013310          290 ETPVSAVSIRR----IPRV--PSDMPLYDILNEFQKGSSHMAAVV  328 (445)
Q Consensus       290 ~~~v~~im~~~----~~~V--~~~~~l~~al~~m~~~~~~~a~Vv  328 (445)
                      ..+++++|.++    ++++  ++++++.+|++.|.+++.+.+||+
T Consensus        10 ~~~v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv   54 (185)
T 2j9l_A           10 KTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVV   54 (185)
T ss_dssp             CCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEE
T ss_pred             cCcHHHHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEE
Confidence            36788998776    7888  999999999999999999999999

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=97.44  E-value=9.4e-05  Score=70.83  Aligned_cols=61  Identities=16%  Similarity=0.294  Sum_probs=53.7

Q ss_pred             CcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCC
Q 013310          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP  287 (445)
Q Consensus       223 l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~  287 (445)
                      ..+.+|+++|++  +++++++++++. ++++.|.+++.+.+||+|++ ++++|+|+..|++....
T Consensus       196 ~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~lvGivT~~Dil~~i~  256 (278)
T 2yvy_A          196 DPRTRVAEIMNP--KVVYVRTDTDQE-EVARLMADYDFTVLPVVDEE-GRLVGIVTVDDVLDVLE  256 (278)
T ss_dssp             CTTCBSTTTSBS--SCCCEETTSBHH-HHHHHHHHHTCSEEEEECTT-SBEEEEEEHHHHHHHC-
T ss_pred             CCCCcHHHHhCC--CCeEEeCCCCHH-HHHHHHHhcCCCEEEEEeCC-CeEEEEEEHHHHHHHHH
Confidence            357789999975  578899999998 99999999999999999865 89999999999998654

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=97.31  E-value=0.00014  Score=70.12  Aligned_cols=60  Identities=15%  Similarity=0.280  Sum_probs=53.3

Q ss_pred             CcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccC
Q 013310          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR  286 (445)
Q Consensus       223 l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~  286 (445)
                      ..+.+|+++|++  +++++++++++. ++++.|.+++.+.+||+|++ ++++|+|+.+|++...
T Consensus       198 ~~~~~v~~im~~--~~~~v~~~~~l~-ea~~~m~~~~~~~lpVVd~~-g~lvGiIT~~Dil~~i  257 (286)
T 2oux_A          198 DDDTLIADILNE--RVISVHVGDDQE-DVAQTIRDYDFLAVPVTDYD-DHLLGIVTVDDIIDVI  257 (286)
T ss_dssp             CTTSBHHHHSBS--CCCCEETTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHH
T ss_pred             CCCCcHHHHcCC--CCeeecCCCCHH-HHHHHHHHcCCcEEEEEcCC-CeEEEEEEHHHHHHHH
Confidence            356789999975  578899999998 99999999999999999865 7999999999998754

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=97.27  E-value=0.00032  Score=73.47  Aligned_cols=57  Identities=9%  Similarity=0.090  Sum_probs=46.0

Q ss_pred             CCccccccccCCceeCCC-CCHHHHHHHHhhCCCeEEEEEc-cCCCccCCCCCCCCCcccc
Q 013310          290 ETPVSAVSIRRIPRVPSD-MPLYDILNEFQKGSSHMAAVVK-AKGKSKTLPPMTDGKKPKL  348 (445)
Q Consensus       290 ~~~v~~im~~~~~~V~~~-~~l~~al~~m~~~~~~~a~Vvd-e~G~~~Giv~~T~~di~~~  348 (445)
                      ..+|+++|.+++++++++ +++.++++.|.+++.+.+||+| +.|+++|+|  |.+|+++.
T Consensus       383 ~~~V~diM~~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~g~lvGiV--t~~Dll~~  441 (527)
T 3pc3_A          383 SLAIAELELPAPPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVV--GQETLITQ  441 (527)
T ss_dssp             TSBGGGGCCCCCSCCEETTCBHHHHHHHHHHHTCSEEEEECTTTCCEEEEE--EHHHHHHH
T ss_pred             CCcHHHhCcCCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCCCEEEEEE--EHHHHHHH
Confidence            367999999999999999 9999999999999999999998 545555555  44444433

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=97.13  E-value=0.00032  Score=72.45  Aligned_cols=60  Identities=17%  Similarity=0.302  Sum_probs=53.8

Q ss_pred             CcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccC
Q 013310          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR  286 (445)
Q Consensus       223 l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~  286 (445)
                      -.+.+++++|++  +++++++++++. ++++.|.+++...+||+|++ ++++|+|+.+|+++..
T Consensus       216 ~~~~~v~dim~~--~~~~v~~~~~l~-ea~~~m~~~~~~~lpVVDe~-g~lvGiIT~~Dil~~i  275 (473)
T 2zy9_A          216 DPRTRVAEIMNP--KVVYVRTDTDQE-EVARLMADYDFTVLPVVDEE-GRLVGIVTVDDVLDVL  275 (473)
T ss_dssp             CTTSBGGGTSBS--SCCCEESSSBHH-HHHHHHHHHTCSEEEEECTT-SBEEEEEEHHHHHHHH
T ss_pred             CCCCcHHHHhCC--CCeEEeCCCcHH-HHHHHHHhcCCcEEEEEcCC-CEEEEEEehHhhHHHH
Confidence            367899999975  688999999998 99999999999999999875 8999999999998754

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=96.38  E-value=0.0083  Score=62.02  Aligned_cols=100  Identities=14%  Similarity=0.177  Sum_probs=69.0

Q ss_pred             cccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCCCCccccccccCC--
Q 013310          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRI--  301 (445)
Q Consensus       224 ~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~im~~~~--  301 (445)
                      .+.+++++|++ .+++++++++++. ++++.|.+++..++||+|++ ++++|+++.+|+++...... ...+...+-.  
T Consensus       150 ~~~~v~~im~~-~~~~~v~~~~~l~-~a~~~m~~~~~~~lpVVd~~-g~lvGivt~~Dil~~~~~~~-~~~d~~~~~~vg  225 (491)
T 1zfj_A          150 YNAPISEHMTS-EHLVTAAVGTDLE-TAERILHEHRIEKLPLVDNS-GRLSGLITIKDIEKVIEFPH-AAKDEFGRLLVA  225 (491)
T ss_dssp             SSSBTTTSCCC-SCCCCEETTCCHH-HHHHHHHHTTCSEEEEECTT-SBEEEEEEHHHHHHHHHCTT-CCBCTTSCBCCE
T ss_pred             CCCcHHHHcCC-CCCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEEHHHHHHHHhccc-cccCcCCcEEEE
Confidence            56789999985 2577899999998 99999999999999999875 89999999999987643211 1111110111  


Q ss_pred             ceeCCCCCHHHHHHHHhhCCCeEEEE
Q 013310          302 PRVPSDMPLYDILNEFQKGSSHMAAV  327 (445)
Q Consensus       302 ~~V~~~~~l~~al~~m~~~~~~~a~V  327 (445)
                      ..++......+.++.+.+.+...+.+
T Consensus       226 ~~i~~~~~~~~~a~~l~~~G~d~ivi  251 (491)
T 1zfj_A          226 AAVGVTSDTFERAEALFEAGADAIVI  251 (491)
T ss_dssp             EEECSSTTHHHHHHHHHHHTCSEEEE
T ss_pred             EeccCchhHHHHHHHHHHcCCCeEEE
Confidence            12333334455566666667776543

>2pli_A Uncharacterized protein; CORC-associated region, MCSG, PSI2, structural genomics, Pro structure initiative; 1.70A {Neisseria meningitidis} SCOP: d.145.1.4

Probab=94.71  E-value=0.0053  Score=48.42  Aligned_cols=49  Identities=12%  Similarity=0.078  Sum_probs=42.6

Q ss_pred             ccccCCCceEeeccCCCccccccccCCCCCC-CCCcccccc-ccCCCCC-Cc
Q 013310          365 KQDEKTESVVVDVDRPLSSGSMNRLSSSQRS-DSTTNGLIY-ASEDIED-GE  413 (445)
Q Consensus       365 ~~~~~~~~~~v~~~~~i~~~~~~~~~~~~~~-~~tl~g~~~-~~~~~e~-g~  413 (445)
                      +.+...+.|.++|.+++.++++.++..++.. +.|++||++ .++++|. |.
T Consensus        12 i~~~~dg~~~v~G~~~l~dl~~~l~~~l~~~~~dTlgG~i~~~lg~iP~~Ge   63 (91)
T 2pli_A           12 IHAVSSERWRIHAATEIEDINTFFGTEYSSEEADTIGGLVIQELGHLPVRGE   63 (91)
T ss_dssp             EEEEETTEEEEETTCBHHHHHHHHCCCCCCSSCCBHHHHHHHHHSSCCCTTC
T ss_pred             eEEeCCCEEEEEcCCCHHHHHHHhCCCCCCCCCccHHHHHHHHhCCCCCCCC
Confidence            4455678899999999999999999988865 999999999 8999987 44

>3llb_A Uncharacterized protein; protein PA3983, unknown function, structural genomics, PSI2, MCSG, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: d.145.1.0

Probab=94.47  E-value=0.0076  Score=46.64  Aligned_cols=47  Identities=15%  Similarity=0.057  Sum_probs=41.2

Q ss_pred             cccCCCceEeeccCCCccccccccCCCCCC-CCCcccccc-ccCCCCCC
Q 013310          366 QDEKTESVVVDVDRPLSSGSMNRLSSSQRS-DSTTNGLIY-ASEDIEDG  412 (445)
Q Consensus       366 ~~~~~~~~~v~~~~~i~~~~~~~~~~~~~~-~~tl~g~~~-~~~~~e~g  412 (445)
                      .+...+.|.++|.+++.|+++.++..++.. +.|++||++ .++++|.-
T Consensus         4 ~~~~dg~~~v~G~~~l~dl~~~l~~~l~~~~~~Tl~G~i~~~lg~iP~~   52 (83)
T 3llb_A            4 KPLPSGDFIVKALTPVDAFNDFFGSEFSDEEFDTVGGLVMSAFGHLPKR   52 (83)
T ss_dssp             EECTTSCEEEETTCBHHHHHHHHCCCCCTTTCSBHHHHHHHHHSSCCCT
T ss_pred             EEeCCCEEEEEccCCHHHHHHHhCCCCCCCCCcCHHHHHHHHhCcCCCC
Confidence            345677899999999999999999988866 899999999 88999863

>3lae_A UPF0053 protein HI0107; APC85784.2, conserved protein, haemophilus influenzae RD KW20, structural genomics, PSI-2; HET: MSE; 1.45A {Haemophilus influenzae} SCOP: d.145.1.4 PDB: 2o1r_A*

Probab=94.46  E-value=0.0086  Score=46.10  Aligned_cols=46  Identities=24%  Similarity=0.197  Sum_probs=40.8

Q ss_pred             cccCCCceEeeccCCCccccccccCCCCCC-CCCcccccc-ccCCCCC
Q 013310          366 QDEKTESVVVDVDRPLSSGSMNRLSSSQRS-DSTTNGLIY-ASEDIED  411 (445)
Q Consensus       366 ~~~~~~~~~v~~~~~i~~~~~~~~~~~~~~-~~tl~g~~~-~~~~~e~  411 (445)
                      .+...+.|.++|.+++.|+++.++..++.. +.|++||++ .++++|.
T Consensus         4 ~~~~dg~~~v~g~~~l~dl~~~l~~~l~~~~~~Tl~G~i~~~lg~iP~   51 (81)
T 3lae_A            4 IQQSDGSMIIDGSANLRDLNKMFNWELDTEDARTFNGLILEHLEEIPD   51 (81)
T ss_dssp             EECTTSCEEEETTCBHHHHHHHHCCCCCCSSCSBHHHHHHHHCSSCCC
T ss_pred             EEeCCCEEEEEeeCCHHHHHHHhCCCCCCCCCccHHHHHHHHhCCCCC
Confidence            345677899999999999999999988865 899999999 8999886

>2rk5_A Putative hemolysin; structural genomics, PSI-2, MCSG, protein structure initiative, midwest center for structural genomics, membrane; 1.50A {Streptococcus mutans UA159} SCOP: d.145.1.4

Probab=94.12  E-value=0.0079  Score=46.95  Aligned_cols=47  Identities=13%  Similarity=0.036  Sum_probs=41.0

Q ss_pred             ccCCCceEeeccCCCccccccccCCCCCC-CCCcccccc-ccCCCCC-Cc
Q 013310          367 DEKTESVVVDVDRPLSSGSMNRLSSSQRS-DSTTNGLIY-ASEDIED-GE  413 (445)
Q Consensus       367 ~~~~~~~~v~~~~~i~~~~~~~~~~~~~~-~~tl~g~~~-~~~~~e~-g~  413 (445)
                      +...+.|.++|++++.++++.++..++.. +.|++||++ .++++|. |.
T Consensus         4 ~~~dg~~~v~G~~~l~dl~~~l~~~l~~~~~dTl~G~v~~~lg~iP~~Gd   53 (87)
T 2rk5_A            4 EIADNTYIVLGTMTLNDFNEYFETDLESDNVDTIAGFYLTGVGTIPSQEE   53 (87)
T ss_dssp             EEETTEEEEETTSBHHHHHHHHTCCCCCTTCCBHHHHHHHHHCSCCCSSS
T ss_pred             EeCCCEEEEEccCCHHHHHHHhCCCCCCCCcccHHHHHHHHhCcCCCCCC
Confidence            34567899999999999999999998865 999999999 8999976 54

>2r2z_A Hemolysin; APC85144, enterococcus faecalis V583, STRU initiative, midwest center for structural genomics, MCSG; 1.20A {Enterococcus faecalis} SCOP: d.145.1.4

Probab=93.90  E-value=0.0095  Score=47.08  Aligned_cols=49  Identities=18%  Similarity=0.080  Sum_probs=42.3

Q ss_pred             ccccCCCceEeeccCCCccccccccCCCCCC-CCCcccccc-ccCCCCC-Cc
Q 013310          365 KQDEKTESVVVDVDRPLSSGSMNRLSSSQRS-DSTTNGLIY-ASEDIED-GE  413 (445)
Q Consensus       365 ~~~~~~~~~~v~~~~~i~~~~~~~~~~~~~~-~~tl~g~~~-~~~~~e~-g~  413 (445)
                      +.+...+.|.++|.+++.++++.++..++.. +.|++||++ .++++|. |.
T Consensus        10 i~~~~dg~~~v~G~~~l~dl~~~l~~~l~~~~~~TlgG~i~~~lg~iP~~Gd   61 (93)
T 2r2z_A           10 YTQVADNEYLVQGRMLIDEFNEVFETDLHMSDVDTMAGYLITALGTIPDEGE   61 (93)
T ss_dssp             EEEEETTEEEEETTSBHHHHHHHHTCCCCCTTCCBHHHHHHHHHSSCCCTTC
T ss_pred             eEEeCCCEEEEECCCCHHHHHHHhCCCCCCCCcccHHHHHHHHhCCCCCCCC
Confidence            3445678899999999999999999998865 999999999 8999986 44

>2p13_A CBS domain; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; 1.65A {Nitrosomonas europaea} SCOP: d.145.1.4

Probab=93.72  E-value=0.013  Score=46.06  Aligned_cols=49  Identities=16%  Similarity=0.058  Sum_probs=42.2

Q ss_pred             ccccCCCceEeeccCCCccccccccCCCCC--C-CCCcccccc-ccCCCCC-Cc
Q 013310          365 KQDEKTESVVVDVDRPLSSGSMNRLSSSQR--S-DSTTNGLIY-ASEDIED-GE  413 (445)
Q Consensus       365 ~~~~~~~~~~v~~~~~i~~~~~~~~~~~~~--~-~~tl~g~~~-~~~~~e~-g~  413 (445)
                      +.+...+.|.++|.+++.++++.++..++.  . +.|++||++ .++++|. |.
T Consensus         9 i~~~~dg~~~v~G~~~l~dl~~~l~~~l~~~~~~~~TlgG~i~~~lg~iP~~Gd   62 (90)
T 2p13_A            9 AEQQADGTWLMDGWISIRKASNLLEHDLVDEAERYSTLGGYLLWQFGYIPAAGE   62 (90)
T ss_dssp             EEECTTSCEEEETTSBHHHHHHHHTSCCCCTTCCCCBHHHHHHHHHSSCCCTTC
T ss_pred             eEEeCCCEEEEECcCCHHHHHHHHCCCCCCcCCCCccHHHHHHHHhCCCCCCCC
Confidence            344567889999999999999999998885  4 999999999 8999987 54

>2pls_A CBS domain protein; APC86064.2, CORC/HLYC transporter associated domain, CBS DOM protein, structural genomics, PSI-2 structure initiative; 2.15A {Chlorobium tepidum tls} SCOP: d.145.1.4

Probab=93.49  E-value=0.015  Score=45.22  Aligned_cols=47  Identities=13%  Similarity=0.051  Sum_probs=40.9

Q ss_pred             ccCCCceEeeccCCCccccccccCC-CCC---C-CCCcccccc-ccCCCCC-Cc
Q 013310          367 DEKTESVVVDVDRPLSSGSMNRLSS-SQR---S-DSTTNGLIY-ASEDIED-GE  413 (445)
Q Consensus       367 ~~~~~~~~v~~~~~i~~~~~~~~~~-~~~---~-~~tl~g~~~-~~~~~e~-g~  413 (445)
                      +...+.|.++|.+++.++++.++.. ++.   . +.|++||++ .++++|. |.
T Consensus         5 ~~~dg~~~v~G~~~l~dl~~~l~~~~l~~~~~~~~~Tl~G~i~~~lg~iP~~Gd   58 (86)
T 2pls_A            5 QREDGSWLLDGLIAVPELKDTLGLRAVPEEEKGVYHTLSGMIMWLLGRLPQTGD   58 (86)
T ss_dssp             ECTTSCEEEETTCBHHHHHHHHTCSCCTTTTSCSCCBHHHHHHHHHTSCCCTTC
T ss_pred             EeCCCeEEEEcccCHHHHHHHhCCCcCCCccCCCcccHHHHHHHHhCCCCCCCC
Confidence            3456789999999999999999998 876   4 999999999 8999986 44

>2o3g_A Putative protein; APC85631.1, neisseria meningitid structural genomics, PSI-2, protein structure initiative; 2.55A {Neisseria meningitidis} SCOP: d.145.1.4

Probab=93.33  E-value=0.017  Score=45.59  Aligned_cols=49  Identities=22%  Similarity=0.191  Sum_probs=38.7

Q ss_pred             ccccCCCceEeeccCCCccccccccCC-CC-CC-CCCcccccc-ccCCCCC-Cc
Q 013310          365 KQDEKTESVVVDVDRPLSSGSMNRLSS-SQ-RS-DSTTNGLIY-ASEDIED-GE  413 (445)
Q Consensus       365 ~~~~~~~~~~v~~~~~i~~~~~~~~~~-~~-~~-~~tl~g~~~-~~~~~e~-g~  413 (445)
                      +.+...+.|.++|.+++.++++.++.. ++ .. +.|++||++ .++++|. |.
T Consensus        11 i~~~~dg~~~v~G~~~l~dl~~~l~~~~l~~~~~~~Tl~G~i~~~lg~iP~~Gd   64 (92)
T 2o3g_A           11 VQGNPDESLTVEGALEYVELAPQLNLPQQEEDADFHTVAGLIMEELQTIPDVGD   64 (92)
T ss_dssp             ------CCSEEETTCBHHHHTTTTTCCCCCTTCSCSBHHHHHHHHHTSCCCTTC
T ss_pred             eEEcCCCEEEEEccCCHHHHHHHhCCCCCCcCCCcccHHHHHHHHhCCCCCCCC
Confidence            344567789999999999999999998 87 44 999999999 8999986 44

>2p4p_A Hypothetical protein HD1797; CORC_HLYC, PFAM: PF03471, structural GE PSI-2, protein structure initiative, midwest center for STR genomics; HET: MLY MSE; 1.80A {Haemophilus ducreyi} SCOP: d.145.1.4

Probab=93.23  E-value=0.021  Score=44.42  Aligned_cols=47  Identities=17%  Similarity=0.169  Sum_probs=40.5

Q ss_pred             ccCCCceEeeccCCCccccccccCC-CCC-C-CCCcccccc-ccCCCCC-Cc
Q 013310          367 DEKTESVVVDVDRPLSSGSMNRLSS-SQR-S-DSTTNGLIY-ASEDIED-GE  413 (445)
Q Consensus       367 ~~~~~~~~v~~~~~i~~~~~~~~~~-~~~-~-~~tl~g~~~-~~~~~e~-g~  413 (445)
                      +...+.|.++|.+++.++++.++.. ++. . +.|++||++ .++++|. |.
T Consensus         5 ~~~dg~~~v~G~~~l~dl~~~l~~~~l~~~~~~~Tl~G~i~~~lg~iP~~Gd   56 (86)
T 2p4p_A            5 RRNEDSWLIDGATPLEDVMRALNIHTFPRDENYETIGGFMMYMLRXIPXXTD   56 (86)
T ss_dssp             CCCCSEEEEETTSBHHHHHHHTTCCCSCCSCSSCBHHHHHHHHHCSCCCTTC
T ss_pred             EeCCCEEEEEccCCHHHHHHHhCCCCCCcCCCCccHHHHHHHHhCCCCCCCc
Confidence            3456789999999999999999996 875 4 999999999 8999987 54

>2oai_A Hemolysin; PFAM03471, xylella fastidiosa temecula1, structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; HET: MLY; 1.80A {Xylella fastidiosa} SCOP: d.145.1.4 PDB: 2r8d_A*

Probab=93.08  E-value=0.015  Score=46.00  Aligned_cols=49  Identities=16%  Similarity=0.089  Sum_probs=39.2

Q ss_pred             ccccCCCceEeeccCCCccccccccCCCCC---C-CCCcccccc-ccCCCCC-Cc
Q 013310          365 KQDEKTESVVVDVDRPLSSGSMNRLSSSQR---S-DSTTNGLIY-ASEDIED-GE  413 (445)
Q Consensus       365 ~~~~~~~~~~v~~~~~i~~~~~~~~~~~~~---~-~~tl~g~~~-~~~~~e~-g~  413 (445)
                      +.+...+.|.++|.+++.++++.++..++.   . +.|++||++ .++++|. |.
T Consensus        12 i~~~~dg~~~v~G~~~l~dl~~~l~~~l~~~~~~~~dTlgG~i~~~lg~iP~~Gd   66 (94)
T 2oai_A           12 MVTREDGSFLIDGTLPIEELREVLGAELPDGEENNYHTLAGMCISYFGRIPHVGE   66 (94)
T ss_dssp             EEECTTSCEEEETTCBHHHHHHHHTC-------CCCSBHHHHHHHHHSSCCCTTC
T ss_pred             eEEeCCCeEEEeccCCHHHHHHHhCCCCCcccCCCCccHHHHHHHHhCCCCCCCC
Confidence            345567889999999999999999998875   4 999999999 8999987 54

>2p3h_A Uncharacterized CBS domain-containing protein; structural genomics, CORC_HLYC, PFAM03471, putative transpor protein; 1.80A {Corynebacterium glutamicum} SCOP: d.145.1.4

Probab=93.07  E-value=0.015  Score=46.80  Aligned_cols=49  Identities=18%  Similarity=0.300  Sum_probs=42.2

Q ss_pred             cccCCCceEeeccCCCccccccccCCCCCC-CCCcccccc-ccCCCCC-Cce
Q 013310          366 QDEKTESVVVDVDRPLSSGSMNRLSSSQRS-DSTTNGLIY-ASEDIED-GEV  414 (445)
Q Consensus       366 ~~~~~~~~~v~~~~~i~~~~~~~~~~~~~~-~~tl~g~~~-~~~~~e~-g~l  414 (445)
                      .+...+.|.++|.+++.|+++.++..+++. +.|++||++ .++++|. |..
T Consensus         7 ~~~~dg~~~v~G~~~l~dl~~~lg~~l~~e~~dTlgGli~~~lg~iP~~Gd~   58 (101)
T 2p3h_A            7 TETSPDKWLIDGDTPLDEVERAIGYELPEGDYETISGLLFDHANALLKTGDV   58 (101)
T ss_dssp             EEEETTEEEEETTCBHHHHHHHHTSCCCCSSCCBHHHHHHHHHCSCCCTTCE
T ss_pred             EEeCCCEEEEEccCCHHHHHHHhCCCCCCCCCccHHHHHHHHhCCCCCCCCE
Confidence            344677899999999999999999988865 999999999 8999976 543

>3ded_A Probable hemolysin; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG, membrane; HET: MSE; 2.14A {Chromobacterium violaceum} SCOP: d.145.1.4

Probab=92.79  E-value=0.025  Score=46.49  Aligned_cols=49  Identities=12%  Similarity=-0.081  Sum_probs=42.3

Q ss_pred             cccccCCCceEeeccCCCccccccccCC--CCC----CCCCcccccc-ccCCCCCC
Q 013310          364 SKQDEKTESVVVDVDRPLSSGSMNRLSS--SQR----SDSTTNGLIY-ASEDIEDG  412 (445)
Q Consensus       364 ~~~~~~~~~~~v~~~~~i~~~~~~~~~~--~~~----~~~tl~g~~~-~~~~~e~g  412 (445)
                      .+.+...+.|.++|.+++.++++.++..  ++.    .+.||+||++ .++++|.-
T Consensus        28 ~i~~~~dg~~~v~G~~~l~dl~e~lg~~~~l~~~~~~~~dTlgGlil~~lg~iP~~   83 (113)
T 3ded_A           28 EIVQREDGSWLVDGMVSLDRFREFFELEAPLPGEAGGNIHTLAGVMLYQLGRVPSV   83 (113)
T ss_dssp             CEEECTTSCEEEETTCBHHHHHHHTTCCSCCTTGGGTCCCBHHHHHHHHHCSSCCT
T ss_pred             ceEEecCCEEEEecccCHHHHHHHhCCCccCCcccCCCCccHHHHHHHHhCCCCCC
Confidence            3456677889999999999999999998  875    3899999999 89999973

>2nqw_A CBS domain protein; PFAM03471, hemolysins, CBS domains, transporter associated D CORC_HLYC, structural genomics, PSI-2; 1.30A {Porphyromonas gingivalis} SCOP: d.145.1.4

Probab=89.92  E-value=0.058  Score=42.46  Aligned_cols=49  Identities=14%  Similarity=0.098  Sum_probs=39.7

Q ss_pred             ccccCCCceEeeccCCCccccccccCCCC------CCCCCcccccc-ccCCCCC-Cc
Q 013310          365 KQDEKTESVVVDVDRPLSSGSMNRLSSSQ------RSDSTTNGLIY-ASEDIED-GE  413 (445)
Q Consensus       365 ~~~~~~~~~~v~~~~~i~~~~~~~~~~~~------~~~~tl~g~~~-~~~~~e~-g~  413 (445)
                      +.+...+.|.++|.+++.++++.++....      ..+.|++||++ .++++|. |.
T Consensus         9 i~~~~dg~~~v~G~~~l~dl~~~l~~~~~~~~~~~~~~~TlgG~i~~~lg~iP~~Gd   65 (93)
T 2nqw_A            9 FKVLGDGSYLFEGKTSLSDVRHYLDLPENAFGELGDEVDTLSGLFLEIKQELPHVGD   65 (93)
T ss_dssp             EEECTTSCEEEETTCBHHHHHHHHTCCTTTTHHHHTTCSBHHHHHHHHHCSCCCTTC
T ss_pred             eEEeCCCEEEEEcccCHHHHHHHhCCCcccccccCCCcccHHHHHHHHhCcCCCCCC
Confidence            34456788999999999999999998111      34899999999 8999986 44

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	445
d2v8qe2	159	d.37.1.1 (E:23-181) 5'-AMP-activated protein kinas	4e-07
d3ddja1	141	d.37.1.1 (A:136-276) Uncharacterized protein SSO32	8e-06
d2ooxe1	179	d.37.1.1 (E:3-181) Uncharacterized protein C1556.0	4e-05
d1pvma4	142	d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Ar	8e-04
d2nyca1	140	d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's	0.002
d1o50a3	145	d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Th	0.003

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.1 bits (111), Expect = 4e-07
 Identities = 11/125 (8%), Positives = 38/125 (30%), Gaps = 20/125 (16%)

Query: 223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSL 282
           +      + +         D + ++  +A   ++  G    P++    ++ +G+L +   
Sbjct: 10  MKSHRCYDLIPTSSKLVVFDTSLQVK-KAFFALVTNGVRAAPLWDSKKQSFVGMLTITDF 68

Query: 283 LTV-------------------RPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSH 323
           + +                              S + +  +  +  L+D ++   +   H
Sbjct: 69  INILHRYYKSALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIH 128

Query: 324 MAAVV 328
              V+
Sbjct: 129 RLPVI 133

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} Length = 141

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 43.5 bits (101), Expect = 8e-06
 Identities = 17/147 (11%), Positives = 42/147 (28%), Gaps = 9/147 (6%)

Query: 292 PVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEA 351
           PV      ++  +  ++ L   +    +       V+    K   +  + +  K      
Sbjct: 3   PVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQ----- 57

Query: 352 KGGDCDLTAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIED 411
                      L       + V   +   L +       +   ++     +       +D
Sbjct: 58  ----LAKAVDKLDPDYFYGKVVKDVMVTNLVTIDELASVNRAAAEMIVKRIGSLLILNKD 113

Query: 412 GEVIGIITLEDVFEELLQEEIVDETDE 438
             + GIIT  D+   L    ++++  E
Sbjct: 114 NTIRGIITERDLLIALHHILVMEKFKE 140

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 179

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 41.9 bits (97), Expect = 4e-05
 Identities = 13/153 (8%), Positives = 35/153 (22%), Gaps = 25/153 (16%)

Query: 208 ELTHDETTIISGALD-LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVY 266
           ++   +   +      +  +T+ + +         DV       ++  +        P++
Sbjct: 1   DVQETQKGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLF-VKTSLSLLTLNNIVSAPLW 59

Query: 267 SGNPKNIIGLLLVKSLLTV-----------------------RPETETPVSAVSIRRIPR 303
                   GLL +   + V                                         
Sbjct: 60  DSEANKFAGLLTMADFVNVIKYYYQSSSFPEAIAEIDKFRLLGLREVERKIGAIPPETIY 119

Query: 304 VPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKT 336
           V     L D      K  +    ++   G++ +
Sbjct: 120 VHPMHSLMDACLAMSKSRARRIPLIDVDGETGS 152

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 142

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 37.6 bits (86), Expect = 8e-04
 Identities = 10/30 (33%), Positives = 16/30 (53%)

Query: 410 EDGEVIGIITLEDVFEELLQEEIVDETDEY 439
           + G V+GI+TL D+   L +  I D    +
Sbjct: 108 DPGRVVGIVTLTDLSRYLSRASITDILLSH 137

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.3 bits (83), Expect = 0.002
 Identities = 18/143 (12%), Positives = 45/143 (31%), Gaps = 13/143 (9%)

Query: 290 ETPVSAVSI---RRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGK-SKTLPPMTDGKK 345
           + P+  ++I     +       P+ D++    +G      ++   G              
Sbjct: 5   KIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGL 64

Query: 346 PKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYA 405
            K          +   L+ + D+         +  LS+   N   +        +     
Sbjct: 65  IKGGIYNDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVD----- 119

Query: 406 SEDIEDGEVIGIITLEDVFEELL 428
               + G ++G++TL D+ + +L
Sbjct: 120 ----DVGRLVGVLTLSDILKYIL 138

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

 Score = 35.7 bits (81), Expect = 0.003
 Identities = 17/138 (12%), Positives = 37/138 (26%), Gaps = 1/138 (0%)

Query: 293 VSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAK 352
           V  +   +   V  D P+ +I++   +        V    K   + P+            
Sbjct: 6   VCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMH-LLKVSGFHF 64

Query: 353 GGDCDLTAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDG 412
            G       + S           ++        M+            N +       E G
Sbjct: 65  FGFIPKEELIRSSMKRLIAKNASEIMLDPVYVHMDTPLEEALKLMIDNNIQEMPVVDEKG 124

Query: 413 EVIGIITLEDVFEELLQE 430
           E++G +   ++   L + 
Sbjct: 125 EIVGDLNSLEILLALWKG 142

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	445
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	99.79
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	99.76
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	99.76
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.75
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.74
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	99.74
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	99.73
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.73
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	99.73
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	99.73
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.72
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.72
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	99.71
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	99.71
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	99.7
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	99.7
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	99.69
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	99.69
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.67
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	99.66
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	99.65
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	99.65
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	99.63
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	99.63
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	99.58
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	99.57
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	98.3
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	98.27
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	98.23
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	98.22
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	98.18
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	98.17
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	98.12
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	98.08
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	98.05
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	98.05
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	98.05
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	98.04
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	97.99
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	97.97
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	97.97
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	97.97
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	97.94
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	97.92
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	97.86
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	97.85
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	97.77
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	97.73
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	97.61
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	97.6
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	97.57
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	97.25
d2o1ra1	78	Hypothetical protein HI0107 {Haemophilus influenza	96.06
d2rk5a1	84	Putative hemolysin SMU1693 {Streptococcus mutans [	95.36
d2p3ha1	98	Uncharacterized protein Cgl1194/Cg1349 {Corynebact	94.97
d2r2za1	84	Putative hemolysin EF0700 {Enterococcus faecalis [	94.88
d2p13a1	85	Uncharacterized protein NE2227 {Nitrosomonas europ	94.76
d2plia1	84	Uncharacterized protein NMB0537 {Neisseria meningi	94.72
d3deda1	87	Probable hemolysin CV0231 {Chromobacterium violace	94.64
d2p4pa1	82	Hypothetical protein HD1797 {Haemophilus ducreyi [	94.42
d2oaia1	87	Hemolysin TlyC {Xylella fastidiosa [TaxId: 2371]}	93.9
d2o3ga1	76	Putative protein NMB1485 {Neisseria meningitidis [	93.9
d2plsa1	84	Hypothetical protein CT0541 {Chlorobium tepidum [T	93.77
d2nqwa1	87	Hypothetical protein PG0272 {Porphyromonas gingiva	92.38

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=99.79  E-value=7.1e-20  Score=155.72  Aligned_cols=101  Identities=18%  Similarity=0.264  Sum_probs=89.8

Q ss_pred             ccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCC---------CCCcccc
Q 013310          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE---------TETPVSA  295 (445)
Q Consensus       225 ~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~---------~~~~v~~  295 (445)
                      +.+|+++|+|.+++++++++++++ ++++.|.+++++++||+|++ ++++|+++.+|++++...         ...++++
T Consensus         1 e~tv~~~mip~~~v~~v~~~~tl~-~a~~~m~~~~~s~~pVvd~~-~~~vGiit~~di~~~~~~~~~~~~~~~~~~~v~~   78 (132)
T d1yava3           1 EATVGQFMIEADKVAHVQVGNNLE-HALLVLTKTGYTAIPVLDPS-YRLHGLIGTNMIMNSIFGLERIEFEKLDQITVEE   78 (132)
T ss_dssp             TCBHHHHSEEGGGSCCEETTCBHH-HHHHHHHHHCCSEEEEECTT-CBEEEEEEHHHHHHHHBCSSSBCGGGTTTSBHHH
T ss_pred             CCCHHHccccccceEEEcCCCCHH-HHHHHHHhhCCCceEEeecc-cccccEEEcchhHHHhhccccccccccccccccc
Confidence            468999999999999999999998 99999999999999999876 899999999999865321         2357889


Q ss_pred             ccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          296 VSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       296 im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      +|.++++++++++++.++++.|.++  +.+||+|
T Consensus        79 ~m~~~~~~v~~~~~l~~~~~~~~~~--~~l~Vvd  110 (132)
T d1yava3          79 VMLTDIPRLHINDPIMKGFGMVINN--GFVCVEN  110 (132)
T ss_dssp             HSBCSCCEEETTSBHHHHHHHTTTC--SEEEEEC
T ss_pred             cccccccccccchhHHHHHHHHHhC--CEEEEEc
Confidence            9999999999999999999999876  4589999

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=99.76  E-value=3.5e-18  Score=142.95  Aligned_cols=98  Identities=12%  Similarity=0.059  Sum_probs=90.0

Q ss_pred             cccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCCCCccccccccCCceeC
Q 013310          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVP  305 (445)
Q Consensus       226 ~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~im~~~~~~V~  305 (445)
                      ++|+++|++  ++.++++++|+. ++++.|.+++++.+||++++ ++++|+++.+|+++...  +.++.++|.+++++++
T Consensus         1 m~v~~~m~~--~~~~v~~~~tv~-ea~~~m~~~~~~~v~Vvd~~-~~~~Gii~~~dl~~~~~--~~~v~~~~~~~~~~v~   74 (121)
T d1vr9a3           1 MKVKKWVTQ--DFPMVEESATVR-ECLHRMRQYQTNECIVKDRE-GHFRGVVNKEDLLDLDL--DSSVFNKVSLPDFFVH   74 (121)
T ss_dssp             CBGGGGCBS--CSCEEETTCBHH-HHHHHHHHTTSSEEEEECTT-SBEEEEEEGGGGTTSCT--TSBSGGGCBCTTCCEE
T ss_pred             CCchhhhcC--CCeEECCCCCHH-HHHHhhhhcCcEEEEEEeCC-ceeEEEeehhhhhhhhc--cccccccccCccEEEC
Confidence            478999985  788999999999 99999999999999999865 79999999999987643  4688999999999999


Q ss_pred             CCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          306 SDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       306 ~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      +++++.++++.|.+++.+.+||+|
T Consensus        75 ~~~~l~~~~~~~~~~~~~~lpVvd   98 (121)
T d1vr9a3          75 EEDNITHALLLFLEHQEPYLPVVD   98 (121)
T ss_dssp             TTSBHHHHHHHHHHCCCSEEEEEC
T ss_pred             CCCCHHHHHHHHHhcCceeeeeEC
Confidence            999999999999999999999999

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.76  E-value=1.3e-18  Score=146.77  Aligned_cols=102  Identities=17%  Similarity=0.256  Sum_probs=92.0

Q ss_pred             CcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCC---CCCcccccccc
Q 013310          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE---TETPVSAVSIR  299 (445)
Q Consensus       223 l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~---~~~~v~~im~~  299 (445)
                      |++.+|+++|++  +++++++++++. ++++.|.+++++++||+++  ++++|+++.+|+++....   .+.++.++|.+
T Consensus         1 l~~~~V~d~m~~--~~v~v~~~~tl~-~a~~~m~~~~~~~~pV~d~--~~~~Givt~~dl~~~~~~~~~~~~~v~~~~~~   75 (127)
T d2ef7a1           1 MEEEIVKEYMKT--QVISVTKDAKLN-DIAKVMTEKNIGSVIVVDG--NKPVGIITERDIVKAIGKGKSLETKAEEFMTA   75 (127)
T ss_dssp             CCCCBGGGTSBC--SCCEEETTCBHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHHHTTCCTTCBGGGTSEE
T ss_pred             CCccCHHHhCCC--CCeEECCcCcHH-HHHHHHHHcCCceEEeecc--cchhhhcchhHHHHHHHhhccccchhhhhhhh
Confidence            467899999985  789999999998 9999999999999999985  689999999999875322   34788999999


Q ss_pred             CCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          300 RIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       300 ~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      ++.++++++++.++++.|.+++.+.+||+|
T Consensus        76 ~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd  105 (127)
T d2ef7a1          76 SLITIREDSPITGALALMRQFNIRHLPVVD  105 (127)
T ss_dssp             CCCCEETTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             hccccccccchhHHHHHHHHcCceEEEEEe
Confidence            999999999999999999999999999999

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.75  E-value=1.2e-18  Score=146.20  Aligned_cols=98  Identities=16%  Similarity=0.212  Sum_probs=71.6

Q ss_pred             cccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCCCCccccccccCCceeC
Q 013310          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVP  305 (445)
Q Consensus       226 ~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~im~~~~~~V~  305 (445)
                      ++|+++|++  +++++++++++. ++++.|.+++++++||++++ ++++|+++.+|++....  ..++.++|.+++++++
T Consensus         1 m~v~diM~~--~~v~v~~~~~v~-~a~~~m~~~~~~~~~Vvd~~-~~~~G~it~~dl~~~~~--~~~~~~~~~~~~~~v~   74 (122)
T d2yzqa2           1 MRVKTIMTQ--NPVTITLPATRN-YALELFKKYKVRSFPVVNKE-GKLVGIISVKRILVNPD--EEQLAMLVKRDVPVVK   74 (122)
T ss_dssp             CBHHHHSEE--SCCCEESSCC-------------CCEEEEECTT-CCEEEEEESSCC------------CCCBSCCCEEE
T ss_pred             CCcccccCC--CCEEECCcCcHH-HHHHHHHHcCCcEEEEEecc-ccchhhhhcchhhhhhc--ccchhhccccceeecc
Confidence            478999986  688999999999 99999999999999999875 89999999999987533  4678899999999999


Q ss_pred             CCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          306 SDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       306 ~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      +++++.++++.|.+++.+.+||+|
T Consensus        75 ~~~~l~~~~~~~~~~~~~~lpVvd   98 (122)
T d2yzqa2          75 ENDTLKKAAKLMLEYDYRRVVVVD   98 (122)
T ss_dssp             TTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             hhhHHHHHHHHHHHcCcEEEEEEe
Confidence            999999999999999999999999

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.74  E-value=5.4e-19  Score=151.53  Aligned_cols=100  Identities=15%  Similarity=0.225  Sum_probs=89.8

Q ss_pred             cccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCC----------CCCcccc
Q 013310          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE----------TETPVSA  295 (445)
Q Consensus       226 ~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~----------~~~~v~~  295 (445)
                      .+|+++|++  +++++++++|+. ++++.|.+++++++||++++ ++++|+++.+|+++....          ...++++
T Consensus         2 ~~V~~iMt~--~v~~v~~~~tl~-~a~~~m~~~~~~~ipVv~~~-~~~~g~i~~~di~~~~~~~~~~~~~~~~~~~~v~~   77 (141)
T d3ddja1           2 FPVKVFMST--KVQTIYKEVRLD-QAVKLMLRRGFRRLPVIDDD-NKVVGIVTVVNAIKQLAKAVDKLDPDYFYGKVVKD   77 (141)
T ss_dssp             CBHHHHSBC--SCCCEETTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHHHHHHHHTCTHHHHTCBHHH
T ss_pred             EeeHHhCcC--CCeEEcCcCcHH-HHHHHHHHcCCCeeeccccc-CccccccccccchhhhhccccccccccccCCCHHH
Confidence            479999997  588999999998 99999999999999999875 789999999998764311          2468899


Q ss_pred             ccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          296 VSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       296 im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      +|.++++++++++++.++++.|.+++.+.+||+|
T Consensus        78 im~~~~~~v~~~~~~~~~~~~m~~~~~~~l~Vvd  111 (141)
T d3ddja1          78 VMVTNLVTIDELASVNRAAAEMIVKRIGSLLILN  111 (141)
T ss_dssp             HSBCCCCBCCTTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             HhCcccccccccchhhHHHHHHHHcCCCEEEEEc
Confidence            9999999999999999999999999999999999

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.74  E-value=3.3e-18  Score=144.32  Aligned_cols=101  Identities=15%  Similarity=0.185  Sum_probs=89.5

Q ss_pred             cccccccccC-CceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCC-----CCCcccccccc
Q 013310          226 KTAEEAMTPI-ESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE-----TETPVSAVSIR  299 (445)
Q Consensus       226 ~~V~diMtpr-~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~-----~~~~v~~im~~  299 (445)
                      .+|+|+|+.+ .+++++++++++. ++++.|.+++++++||+++  ++++|+++.+|+++....     .+.+++++|.+
T Consensus         2 ~tV~dim~~k~~~v~~i~~~~tl~-~a~~~m~~~~~~~vpV~~~--~~~vGiit~~Di~~~~~~~~~~~~~~~v~~im~~   78 (127)
T d2rc3a1           2 KTVKHLLQEKGHTVVAIGPDDSVF-NAMQKMAADNIGALLVMKD--EKLVGILTERDFSRKSYLLDKPVKDTQVKEIMTR   78 (127)
T ss_dssp             CBHHHHHHHHCCCCCEECTTSBHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHGGGSSSCGGGSBGGGTSBC
T ss_pred             ccHHHHHccCCCccEEECCcCcHH-HHHHHHHHcCCCEEEEEEC--CeEEEEEEccchhhhhhhhcccccceeEeeeccc
Confidence            3799999753 4789999999998 9999999999999999985  789999999999764311     23678999999


Q ss_pred             CCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          300 RIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       300 ~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      ++.++.+++++.++++.|.+++.+.+||+|
T Consensus        79 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd  108 (127)
T d2rc3a1          79 QVAYVDLNNTNEDCMALITEMRVRHLPVLD  108 (127)
T ss_dssp             SCCCBCTTCBHHHHHHHHHHHTCSEEEEEE
T ss_pred             eeEEeccCccHHHHHHHHHHCCCcEEEEEE
Confidence            999999999999999999999999999998

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.73  E-value=1.5e-18  Score=145.70  Aligned_cols=100  Identities=13%  Similarity=0.227  Sum_probs=88.5

Q ss_pred             cccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCC-----CCCccccccccC
Q 013310          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE-----TETPVSAVSIRR  300 (445)
Q Consensus       226 ~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~-----~~~~v~~im~~~  300 (445)
                      .+|+|+|++  +++++++++++. ++++.|.+++++++||++++ ++++|+++.+|+++....     ....++++|..+
T Consensus         1 tt~~diM~~--~~~~v~~~~tl~-~a~~~m~~~~~~~~pVvd~~-~~~~Giit~~Di~~~~~~~~~~~~~~~v~~im~~~   76 (123)
T d1y5ha3           1 TTARDIMNA--GVTCVGEHETLT-AAAQYMREHDIGALPICGDD-DRLHGMLTDRDIVIKGLAAGLDPNTATAGELARDS   76 (123)
T ss_dssp             CCHHHHSEE--TCCCEETTSBHH-HHHHHHHHHTCSEEEEECGG-GBEEEEEEHHHHHHTTGGGTCCTTTSBHHHHHTTC
T ss_pred             CCHHHhcCC--CCcEECCcCcHH-HHHHHHHHcCCCceEEEecc-chhhhhhhhhhHhhhhhhcCCCcccceEEEEeecc
Confidence            479999985  688999999998 99999999999999999875 799999999998754221     235678888899


Q ss_pred             CceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          301 IPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       301 ~~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      ++++++++++.++++.|.+++.+.+||+|
T Consensus        77 ~~~v~~~~~~~~~~~~m~~~~~~~lpVvd  105 (123)
T d1y5ha3          77 IYYVDANASIQEMLNVMEEHQVRRVPVIS  105 (123)
T ss_dssp             CCCEETTCCHHHHHHHHHHHTCSEEEEEE
T ss_pred             ceeeeecchHHHHHHHHHHcCceEEEEEE
Confidence            99999999999999999999999999998

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.73  E-value=4.6e-18  Score=148.12  Aligned_cols=103  Identities=17%  Similarity=0.199  Sum_probs=91.3

Q ss_pred             CcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCC--------------
Q 013310          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE--------------  288 (445)
Q Consensus       223 l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~--------------  288 (445)
                      +++.+|+++|++  +++++++++++. ++++.|.+++++++||++++ ++++|+++.+|+++....              
T Consensus         1 ~~~~~v~~~m~r--~v~~v~~~~~l~-~a~~~m~~~~~~~lPVvd~~-~~lvG~it~~Dl~~~~~~~~~~~~~~~~~~~~   76 (156)
T d2yzqa1           1 YKGVEIEPYYQR--YVSIVWEGTPLK-AALKALLLSNSMALPVVDSE-GNLVGIVDETDLLRDSEIVRIMKSTELAASSE   76 (156)
T ss_dssp             GGGCBSTTTSBS--CCCCEETTSBHH-HHHHHHHTCSSSEEEEECTT-SCEEEEEEGGGGGGCGGGCC------------
T ss_pred             CCCCCHHHHhcC--CCeEECCcCcHH-HHHHHHHHcCCCEEEEEeCC-CCceeEEeeeechhhhcccccccccccccchh
Confidence            467899999985  699999999998 99999999999999999875 899999999998643110              


Q ss_pred             --------------------CCCccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          289 --------------------TETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       289 --------------------~~~~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                                          ...+++++|.+++.++++++++.++++.|.+++.+.+||+|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~tv~~~~~l~~~~~~m~~~~~~~lpVvd  137 (156)
T d2yzqa1          77 EEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIR  137 (156)
T ss_dssp             --------------------CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEE
T ss_pred             hhhhhhhhhhhhHHHhhhcccCCEeehhcccCceEECcccccHHHHHHHHHcCeeEEEEEe
Confidence                                12478899999999999999999999999999999999999

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.73  E-value=1.2e-18  Score=155.43  Aligned_cols=122  Identities=11%  Similarity=0.138  Sum_probs=104.0

Q ss_pred             CHHHHHHHHHhhcC-cccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCC
Q 013310          210 THDETTIISGALDL-TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE  288 (445)
Q Consensus       210 ~~~E~~~l~~~~~l-~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~  288 (445)
                      ++.++..++.+.+| .+.+++|+|++..++++++.+.++. +|++.|.+++++++||++++.++++|+++.+|+++....
T Consensus         3 ~~~~~~~~~~i~~fl~~~~~~dvm~~s~~vv~i~~~~~v~-~A~~~m~~~~i~~lpVvd~~~~~~vGiis~~Di~~~l~~   81 (179)
T d2ooxe1           3 QETQKGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVK-TSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKY   81 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHSBHHHHSCSEEEEEEEETTSBHH-HHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHcCCEeeeeCCCCCcEEEEECcchHH-HHHHHHHHcCCCeEEEEeCCCCeeEEEEeechHHHHHHh
Confidence            45778888888886 8899999999888999999999998 999999999999999999766889999999999753210


Q ss_pred             ---------C--------------CCccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEccCC
Q 013310          289 ---------T--------------ETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKG  332 (445)
Q Consensus       289 ---------~--------------~~~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G  332 (445)
                               .              .......|.++++++++++++.+++..|.+++.|.+||+|++|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~sl~~~~~~m~~~~~~~lpVvd~~g  148 (179)
T d2ooxe1          82 YYQSSSFPEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDG  148 (179)
T ss_dssp             HHHHCSCGGGGGGGGGSBHHHHHHHHHHTTCSCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEEEECT
T ss_pred             ccccccchhhhhhhhccchhhhcccceeeeecccCceEECCCCcHHHHHHHhhhcCceEEEEEecCC
Confidence                     0              0123345788999999999999999999999999999999543

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=99.73  E-value=2.2e-18  Score=147.68  Aligned_cols=100  Identities=24%  Similarity=0.272  Sum_probs=89.8

Q ss_pred             cccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCC------------CCCcc
Q 013310          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE------------TETPV  293 (445)
Q Consensus       226 ~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~------------~~~~v  293 (445)
                      ++|+|+|++  +++++++++++. ++++.|.+++++++||+|++ ++++|+++.+|+++....            .+.++
T Consensus         2 i~v~diM~~--~~~~v~~~~tl~-~a~~~m~~~~~~~lpVvd~~-~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~v   77 (139)
T d2o16a3           2 IKVEDMMTR--HPHTLLRTHTLN-DAKHLMEALDIRHVPIVDAN-KKLLGIVSQRDLLAAQESSLQRSAQGDSLAFETPL   77 (139)
T ss_dssp             CBGGGTSEE--SCCCBCTTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHHHHHCC---------CCCBH
T ss_pred             EEHHHhCcC--CCeEECCcCCHH-HHHHHHHHcCCCeeeeeccc-ccccccccHHHHHHHHHhhhhhhhcccccccccch
Confidence            479999996  688999999998 99999999999999999876 899999999999754211            23689


Q ss_pred             ccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          294 SAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       294 ~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      +++|.++++++++++++.++++.|.+++.+.+||+|
T Consensus        78 ~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd  113 (139)
T d2o16a3          78 FEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVA  113 (139)
T ss_dssp             HHHSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEE
T ss_pred             hHhhccccccccccchHHHHHHHHHHcCceEEEEEE
Confidence            999999999999999999999999999999999998

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.72  E-value=7.1e-18  Score=142.36  Aligned_cols=97  Identities=18%  Similarity=0.180  Sum_probs=88.3

Q ss_pred             ccccccccCCceEEeeCCCCccHHHHHHHHHcC-----CcEEEeEeCCCCCEEEEEEhhhhhccCCCCCCccccccccCC
Q 013310          227 TAEEAMTPIESTFSLDVNSKLDWEAMGKILARG-----HSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRI  301 (445)
Q Consensus       227 ~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~-----~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~im~~~~  301 (445)
                      ||+.+|++  +++++++++|+. ++++.|++++     .+.+||+|++ ++++|+++.++++....  +.+++++|.+++
T Consensus         2 taG~iM~~--d~i~v~~~~tv~-ea~~~m~~~~~~~~~~~~~~Vvd~~-~~l~G~v~~~~l~~~~~--~~~v~~im~~~~   75 (127)
T d2ouxa2           2 TAGAIMTT--EFVSIVANQTVR-SAMYVLKNQADMAETIYYVYVVDQE-NHLVGVISLRDLIVNDD--DTLIADILNERV   75 (127)
T ss_dssp             BHHHHCBS--CCCEECSSSBHH-HHHHHHHHHCSSCSCCSEEEEECTT-CBEEEEEEHHHHTTSCT--TSBHHHHSBSCC
T ss_pred             ChhHhCCC--CcEEECCCCcHH-HHHHHhHhhcccccceeeeEEEecC-CeEEEEEEeeccccccc--cEEhhhhccCCC
Confidence            68999985  799999999998 9999998774     6789999875 89999999999987543  578999999999


Q ss_pred             ceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          302 PRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       302 ~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      +++++++++.++++.|.+++.+.+||+|
T Consensus        76 ~~v~~~~~l~~a~~~m~~~~~~~lPVVD  103 (127)
T d2ouxa2          76 ISVHVGDDQEDVAQTIRDYDFLAVPVTD  103 (127)
T ss_dssp             CCEETTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             ccCCCCCCHHHHHHHHHHhCCEEEEEEe
Confidence            9999999999999999999999999999

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.72  E-value=7.4e-18  Score=145.00  Aligned_cols=100  Identities=23%  Similarity=0.262  Sum_probs=90.2

Q ss_pred             cccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCC-----CCCccccccccC
Q 013310          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE-----TETPVSAVSIRR  300 (445)
Q Consensus       226 ~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~-----~~~~v~~im~~~  300 (445)
                      ++|+|+|++  ++.++++++++. ++++.|.+++++++||++++ ++++|+++.+|+++....     ...+++++|.++
T Consensus         3 m~v~dim~~--~~~~v~~~~tl~-~a~~~m~~~~~~~~~V~d~~-~~~~Giit~~di~~~~~~~~~~~~~~~v~~im~~~   78 (142)
T d1pvma4           3 MRVEKIMNS--NFKTVNWNTTVF-DAVKIMNENHLYGLVVKDDN-GNDVGLLSERSIIKRFIPRNKKPDEVPIRLVMRKP   78 (142)
T ss_dssp             CBGGGTSBT--TCCEEETTCBHH-HHHHHHHHHTCCEEEEECTT-SCEEEEEEHHHHHHHTGGGCCCGGGSBGGGTSBSS
T ss_pred             EEHHHhCCC--CCcEECCcCcHH-HHHHHHHHCCCceEeeeccC-CcccceEEeechhhhhhhhcccccccccccccccc
Confidence            579999985  788999999998 99999999999999999875 899999999999764321     235789999999


Q ss_pred             CceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          301 IPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       301 ~~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      ++++++++++.++++.|.+++.+.+||+|
T Consensus        79 ~~~v~~~~~l~~~~~~m~~~~~~~lpVvd  107 (142)
T d1pvma4          79 IPKVKSDYDVKDVAAYLSENGLERCAVVD  107 (142)
T ss_dssp             CCEEETTCBHHHHHHHHHHHTCSEEEEEC
T ss_pred             cccccchhhHHHHHHHHHHcCCcEEEEEe
Confidence            99999999999999999999999999999

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.71  E-value=2.8e-17  Score=139.51  Aligned_cols=100  Identities=13%  Similarity=0.220  Sum_probs=89.7

Q ss_pred             cccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCC----CCCccccccccCC
Q 013310          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE----TETPVSAVSIRRI  301 (445)
Q Consensus       226 ~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~----~~~~v~~im~~~~  301 (445)
                      .+|+++|+.  +++++++++++. ++++.|.+++++++||+|++ ++++|+++.+|+++....    .+.+++++|.+++
T Consensus         5 ~pV~~im~~--~~~~v~~~~t~~-~a~~~m~~~~~~~~~Vvd~~-~~~~Giit~~di~~~~~~~~~~~~~~v~~im~~~~   80 (132)
T d2yzia1           5 APIKVYMTK--KLLGVKPSTSVQ-EASRLMMEFDVGSLVVINDD-GNVVGFFTKSDIIRRVIVPGLPYDIPVERIMTRNL   80 (132)
T ss_dssp             SBGGGTCBC--CCCEECTTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHTTTTCCCTTSBGGGTCBCSC
T ss_pred             CcHHHHcCC--CCeEECCcCcHH-HHHHHHHHcCCcEEEEeccc-ceeeeeeeHHHHHHHHhhccCccceeEeecccccc
Confidence            479999984  799999999998 99999999999999999875 799999999999865332    2468999999999


Q ss_pred             ceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          302 PRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       302 ~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      +++++++++.++++.|.+++.+.+||++
T Consensus        81 ~~v~~~~~~~~~~~~m~~~~~~~l~V~~  108 (132)
T d2yzia1          81 ITANVNTPLGEVLRKMAEHRIKHILIEE  108 (132)
T ss_dssp             CEEETTSBHHHHHHHHHHHTCSEEEEEE
T ss_pred             cccCcchHHHHHHHHHHHcCCCEEEEEE
Confidence            9999999999999999999999999876

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.71  E-value=8.6e-18  Score=140.31  Aligned_cols=98  Identities=14%  Similarity=0.206  Sum_probs=87.7

Q ss_pred             ccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCC----CCCccccccccCCc
Q 013310          227 TAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE----TETPVSAVSIRRIP  302 (445)
Q Consensus       227 ~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~----~~~~v~~im~~~~~  302 (445)
                      +|+|+|++  +++++++++|+. ++++.|.+++++.+||.++  ++++|+++.+|+++....    .+.++.++|.++++
T Consensus         1 kV~diM~~--~~~~v~~~~sl~-ea~~~~~~~~~~~~~V~~~--~~~~Gvit~~Di~~~l~~~~~~~~~~v~~~m~~~~~   75 (120)
T d1pbja3           1 RVEDVMVT--DVDTIDITASLE-DVLRNYVENAKGSSVVVKE--GVRVGIVTTWDVLEAIAEGDDLAEVKVWEVMERDLV   75 (120)
T ss_dssp             CHHHHCBC--SCCEEETTCBHH-HHHHHHHHHCCCEEEEEET--TEEEEEEEHHHHHHHHHHTCCTTTSBHHHHCBCGGG
T ss_pred             ChHHhCCC--CCeEECCcCcHH-HHHHHHHHcCceEEEEEeC--CcEEEEEEeeeccccccccccccceeEeeecccccc
Confidence            58999985  788999999999 9999999999999999975  789999999999875322    24689999999999


Q ss_pred             eeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          303 RVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       303 ~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      ++++++++.+|++.|++++.+.+||+|
T Consensus        76 ~v~~~~~l~~a~~~m~~~~~~~l~V~~  102 (120)
T d1pbja3          76 TISPRATIKEAAEKMVKNVVWRLLVEE  102 (120)
T ss_dssp             EECTTSCHHHHHHHHHHHTCSEEEEEE
T ss_pred             cccchhHHHHHHHHHHHcCCeEEEEEE
Confidence            999999999999999999999999976

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.70  E-value=5.4e-18  Score=148.19  Aligned_cols=106  Identities=10%  Similarity=0.285  Sum_probs=91.7

Q ss_pred             CcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCC-------------
Q 013310          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET-------------  289 (445)
Q Consensus       223 l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~-------------  289 (445)
                      |...+++|+|.+..++++++.++++. ++++.|.+++++++||++++.++++|+++.+|++......             
T Consensus        10 l~~~t~~Dlm~~~~~vv~l~~~~sv~-eA~~~l~~~~~~~~pVv~~~~~~~vG~is~~Dl~~~~~~~~~~~~~~~~~~~~   88 (159)
T d2v8qe2          10 MKSHRCYDLIPTSSKLVVFDTSLQVK-KAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSALVQIYELEE   88 (159)
T ss_dssp             HHHSBGGGGSCSEEEEEEEETTSBHH-HHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHHTTTCCCGGG
T ss_pred             hcCCEEEeECCCCCceEEEcCCCcHH-HHHHHHHHcCCCceeEEECCCCcEEEEEEHHHHHHHHHhccccccchhhhhhh
Confidence            45679999998888999999999998 9999999999999999987668899999999997542110             


Q ss_pred             ------CCccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          290 ------ETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       290 ------~~~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                            .....++|.++++++++++++.++++.|.+++.|.+||+|
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~v~~~~~l~~v~~~m~~~~~~~v~Vvd  134 (159)
T d2v8qe2          89 HKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVID  134 (159)
T ss_dssp             CBHHHHHHHHSSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEEC
T ss_pred             hhcccccceeeeeeccceEEECCCCcHHHHHHHHHHhCCeEEEEEE
Confidence                  0133467788899999999999999999999999999998

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=99.70  E-value=8.3e-18  Score=145.09  Aligned_cols=97  Identities=16%  Similarity=0.209  Sum_probs=87.9

Q ss_pred             ccccccccCCceEEeeCCCCccHHHHHHHHHcC-----CcEEEeEeCCCCCEEEEEEhhhhhccCCCCCCccccccccCC
Q 013310          227 TAEEAMTPIESTFSLDVNSKLDWEAMGKILARG-----HSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRI  301 (445)
Q Consensus       227 ~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~-----~s~~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~im~~~~  301 (445)
                      +|+++|++  +++++++++|+. ++++.|++++     .+.+||++++ ++++|+++.+|+.....  +.++.++|.+++
T Consensus         2 taG~iM~~--~~itv~~~~tv~-ea~~~m~~~~~~~~~~~~~~Vvd~~-~~l~G~v~~~dl~~~~~--~~~v~~im~~~~   75 (144)
T d2yvxa2           2 EAGGLMTP--EYVAVREGMTVE-EVLRFLRRAAPDAETIYYIYVVDEK-GRLKGVLSLRDLIVADP--RTRVAEIMNPKV   75 (144)
T ss_dssp             SSGGGCBS--CCCEECSSCBHH-HHHHHSSSSCTTSSCSSBCEEBCTT-CBBCCBCBHHHHTTSCT--TCBSTTTSBSSC
T ss_pred             CcccccCC--CCEEECCCCcHH-HHHHHHHHhcccccceeeeEEecCC-CCEecccchhhhhhccc--ccchHHhcccCC
Confidence            68999996  799999999998 9999998775     6788999875 89999999999987533  468899999999


Q ss_pred             ceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          302 PRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       302 ~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      +++++++++.+|++.|.+++.+.+||||
T Consensus        76 ~~v~~~~~~~~a~~~m~~~~~~~lPVVd  103 (144)
T d2yvxa2          76 VYVRTDTDQEEVARLMADYDFTVLPVVD  103 (144)
T ss_dssp             CCEESSCCHHHHHHHHHHSCCSEEEEEC
T ss_pred             ccCCCCChHHHHHHHHHHcCCCEEEEEe
Confidence            9999999999999999999999999999

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.69  E-value=6.9e-17  Score=135.88  Aligned_cols=92  Identities=12%  Similarity=0.133  Sum_probs=80.0

Q ss_pred             ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCC-CCCEEEEEEhhhhhccCCCCCCccccccccCCceeCCCCCHHHHHH
Q 013310          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGN-PKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILN  315 (445)
Q Consensus       237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~-~~~ivGiv~~kDll~~~~~~~~~v~~im~~~~~~V~~~~~l~~al~  315 (445)
                      +++++++++++. ++++.|.+++++++||+|+. .++++|+++.+|+......+......+|.++++++++++++.++++
T Consensus         6 dpvtv~~~~tv~-~a~~~m~~~~~~~~pVvD~~~~~~lvGivt~~Di~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~   84 (126)
T d1zfja4           6 DPFFLTPEHKVS-EAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFISDYNAPISEHMTSEHLVTAAVGTDLETAER   84 (126)
T ss_dssp             SCCCBCSSSBHH-HHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCSCSSSBTTTSCCCSCCCCEETTCCHHHHHH
T ss_pred             CceEECCCCCHH-HHHHHHHHhCCCcEEEEeeccCCeEEEEeEHHHHHHhhccCCceeeeeeccceeecCCCCCHHHHHH
Confidence            567899999998 99999999999999999862 4789999999999887554444444555677889999999999999


Q ss_pred             HHhhCCCeEEEEEc
Q 013310          316 EFQKGSSHMAAVVK  329 (445)
Q Consensus       316 ~m~~~~~~~a~Vvd  329 (445)
                      .|.+++.+.+||+|
T Consensus        85 ~m~~~~~~~lpVVd   98 (126)
T d1zfja4          85 ILHEHRIEKLPLVD   98 (126)
T ss_dssp             HHHHTTCSEEEEEC
T ss_pred             HHHhcCCcEEEEEc
Confidence            99999999999999

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.69  E-value=3.7e-17  Score=142.36  Aligned_cols=104  Identities=9%  Similarity=-0.016  Sum_probs=88.4

Q ss_pred             CcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCC-CCCEEEEEEhhhhhccCCC-------------
Q 013310          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGN-PKNIIGLLLVKSLLTVRPE-------------  288 (445)
Q Consensus       223 l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~-~~~ivGiv~~kDll~~~~~-------------  288 (445)
                      -.+++|+|+|++  +++++++++++. ++++.|.+++++.+||++++ .+.++|+++..|++.....             
T Consensus         8 ~~~~~V~diM~~--~~~~v~~~~tv~-e~~~~l~~~~~~~~PVvd~~~~~~lvg~is~~dl~~~l~~~~~~~~~~~~~~~   84 (160)
T d2d4za3           8 KYNIQVGDIMVR--DVTSIASTSTYG-DLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPFEEM   84 (160)
T ss_dssp             CSSCBTTSSSBS--SCCCEETTCBHH-HHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCSC
T ss_pred             ccceEHHHhcCC--CCeEECCCCcHH-HHHHHHHhcCCCccccccccccccccccchHHHHHHHHhhccccccccchhhc
Confidence            346799999985  789999999999 99999999999999999853 3679999999999653210             


Q ss_pred             ----------------CCCccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          289 ----------------TETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       289 ----------------~~~~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                                      ....+.++|.++++++++++++.++++.|.+++.+.+||+|
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~~~l~~~~~~m~~~~v~~l~V~d  141 (160)
T d2d4za3          85 LTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS  141 (160)
T ss_dssp             CBHHHHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE
T ss_pred             cccchhhhhhhhhcccccceeeecccCCCEEEcCCCCHHHHHHHHHHcCCeEEEEEE
Confidence                            01235667888999999999999999999999999999987

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.67  E-value=7.2e-17  Score=137.04  Aligned_cols=98  Identities=22%  Similarity=0.223  Sum_probs=87.8

Q ss_pred             cccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCC--------------CCC
Q 013310          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE--------------TET  291 (445)
Q Consensus       226 ~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~--------------~~~  291 (445)
                      ++|+++|++  +++++++++++. ++++.|.++|++++||++   ++++|+++..|+++....              ...
T Consensus         1 m~V~~lM~~--~~~~v~~~~tl~-~a~~~m~~~~~~~l~V~d---~~lvg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (135)
T d3ddja2           1 MNIETLMIK--NPPILSKEDRLG-SAFKKINEGGIGRIIVAN---EKIEGLLTTRDLLSTVESYCKDSCSQGDLYHISTT   74 (135)
T ss_dssp             SSGGGTCEE--SCCEECTTSBHH-HHHHHTTGGGCCEEEEES---SSEEEEEEHHHHHGGGTTCC---CCHHHHHHHHTS
T ss_pred             CEeeEEeeC--CCeEECCCCcHH-HHHHHHHHhCCeEEEEEe---cceeceeeccchhhhhccccccchhhhhccccccC
Confidence            479999986  678899999998 999999999999999986   369999999999865421              136


Q ss_pred             ccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          292 PVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       292 ~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      +++++|.+++.++++++++.++++.|.+++.+.+||+|
T Consensus        75 ~v~~im~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd  112 (135)
T d3ddja2          75 PIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVD  112 (135)
T ss_dssp             BGGGTSEESCCCEETTSCHHHHHHHHHHHTCSEEEEEC
T ss_pred             CHHHHhCCccceEEeccccchhhhhhhhcceeEEEEEe
Confidence            79999999999999999999999999999999999999

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.66  E-value=2.1e-16  Score=137.36  Aligned_cols=101  Identities=10%  Similarity=0.171  Sum_probs=84.8

Q ss_pred             cccccccc-CCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCC-----CCCcccccc---
Q 013310          227 TAEEAMTP-IESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE-----TETPVSAVS---  297 (445)
Q Consensus       227 ~V~diMtp-r~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~-----~~~~v~~im---  297 (445)
                      +++++|.+ +++++++++++++. ++++.|.+++++++||++++ ++++|+++.+|+++....     .+.++.++|   
T Consensus         2 pl~~~~ig~~~~vv~v~~~~~v~-~a~~~m~~~~~~~lpVvd~~-~~~vG~it~~Dl~~~~~~~~~~~~~~~v~~~~~~~   79 (153)
T d2ooxe2           2 PLNQMTIGTWSNLATASMETKVY-DVIKMLAEKNISAVPIVNSE-GTLLNVYESVDVMHLIQDGDYSNLDLSVGEALLKR   79 (153)
T ss_dssp             BGGGTCCSBCSSCCCBCTTSBHH-HHHHHHHHTTCSEEEEECGG-GBEEEEEEHHHHHHHHGGGCGGGGGSBHHHHHHTS
T ss_pred             CHHHcCCCCCCCCeEEeCcCcHH-HHHHHHHHcCcceEeeeccc-ceEEEEEEeeeeeehhccccccccccchhhheeee
Confidence            57788765 57899999999999 99999999999999999875 799999999999865332     123444443   


Q ss_pred             ---ccCCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          298 ---IRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       298 ---~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                         ..+++++++++++.++++.|.+++.+.+||+|
T Consensus        80 ~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd  114 (153)
T d2ooxe2          80 PANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVD  114 (153)
T ss_dssp             CCCSSCCCEECTTCBHHHHHHHHHHSCCSEEEEEC
T ss_pred             ecccCCCeEECCCCcHHHHHHhhhhceeeEEEEEc
Confidence               45667899999999999999999999999999

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.65  E-value=1.4e-16  Score=134.57  Aligned_cols=101  Identities=12%  Similarity=0.110  Sum_probs=85.6

Q ss_pred             cccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeC-CCCCEEEEEEhhhhhccCCCC--CCccccccccCCc
Q 013310          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSG-NPKNIIGLLLVKSLLTVRPET--ETPVSAVSIRRIP  302 (445)
Q Consensus       226 ~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~-~~~~ivGiv~~kDll~~~~~~--~~~v~~im~~~~~  302 (445)
                      ++|+|+|++  +++++++++++. ++++.|.+++++++||++. +.++++|+++..|+.+....+  .......+.++++
T Consensus         1 ~~V~dim~~--~~v~v~~~~tl~-ea~~~m~~~~~~~~~Vv~~d~~~~~iGi~~~~dl~~~~~~~~~~~~~~~~~~~~~~   77 (131)
T d2riha1           1 IRTSELLKR--PPVSLPETATIR-EVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRLDLDGPAMPIANSPI   77 (131)
T ss_dssp             CBGGGGCCS--CCEEEETTCBHH-HHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTTCCTTSBSGGGCBCCC
T ss_pred             CCHHHhccC--CCEEECCCCcHH-HHHHHHHHhCCCcEEEEEEcCCCEEEEEEeeeccccccccccccccccccccccce
Confidence            479999985  688999999998 9999999999999999963 236799999999998753222  2233344678889


Q ss_pred             eeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          303 RVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       303 ~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      ++.+++++.++++.|.+++.+.+||+|
T Consensus        78 ~v~~~~~~~~a~~~m~~~~i~~lpVvd  104 (131)
T d2riha1          78 TVLDTDPVHVAAEKMRRHNIRHVVVVN  104 (131)
T ss_dssp             EEETTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             eEeeecchHHHHHHHHHCCeEEEEEEc
Confidence            999999999999999999999999999

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.65  E-value=4.1e-16  Score=133.99  Aligned_cols=105  Identities=14%  Similarity=0.186  Sum_probs=86.9

Q ss_pred             Cccccccccccc-CCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCC-----CC-----
Q 013310          223 LTEKTAEEAMTP-IESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET-----ET-----  291 (445)
Q Consensus       223 l~~~~V~diMtp-r~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~-----~~-----  291 (445)
                      |-..++++++.+ .++++++++++|+. ++++.|.+++++++||++++ ++++|+++.+|++......     ..     
T Consensus         6 f~~~~l~~l~i~~~~~v~~v~~~~tv~-eal~~m~~~~~~~lpVvd~~-~~~~Gvit~~di~~~l~~~~~~~~~~~v~~~   83 (145)
T d2v8qe1           6 FMSKSLEELQIGTYANIAMVRTTTPVY-VALGIFVQHRVSALPVVDEK-GRVVDIYSKFDVINLAAEKTYNNLDVSVTKA   83 (145)
T ss_dssp             GGGSBHHHHTCSBCSSCCCEETTCBHH-HHHHHHHHHCCSEEEEECTT-SBEEEEEEGGGTGGGGGSSCCCCCSSBHHHH
T ss_pred             HhhCCHHHHcCCCCCCceEEcCcCcHH-HHHHHHHHcCCCcccccccC-CceEEEEEcchhhhhhhcccccchhhhhhhc
Confidence            334577887653 35789999999998 99999999999999999865 7899999999998764332     11     


Q ss_pred             -ccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          292 -PVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       292 -~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                       .....|..+++++++++++.++++.|.+++.+.+||+|
T Consensus        84 ~~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd  122 (145)
T d2v8qe1          84 LQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVD  122 (145)
T ss_dssp             GGGCCSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             cchhhhccCCCeEECCCCcHHHHHHHHHHcCceEEEEEc
Confidence             23344667888999999999999999999999999999

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=4.7e-16  Score=137.25  Aligned_cols=104  Identities=14%  Similarity=0.166  Sum_probs=85.3

Q ss_pred             ccccccccccCCce----EEeeCCCCccHHHHHHHHHcCCcEEEeEeC-CCCCEEEEEEhhhhhccCCC-----------
Q 013310          225 EKTAEEAMTPIEST----FSLDVNSKLDWEAMGKILARGHSRVPVYSG-NPKNIIGLLLVKSLLTVRPE-----------  288 (445)
Q Consensus       225 ~~~V~diMtpr~~v----v~v~~~~sl~~e~l~~~~~~~~s~~PV~~~-~~~~ivGiv~~kDll~~~~~-----------  288 (445)
                      ...|+|+|.|+...    +.++.+.|+. ++.+.|.+++++++||+++ +.++++|+++.+|++.+...           
T Consensus         2 ~~~a~DiM~p~~~~~~~~v~~~~~~tv~-~a~~ll~~~~~~~~PVV~~~~~~~lvG~is~~dl~~~l~~~~~~~~~~~~~   80 (169)
T d2j9la1           2 KTLAMDVMKPRRNDPLLTVLTQDSMTVE-DVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVST   80 (169)
T ss_dssp             CCBHHHHSBSCTTSCCCCCEESSCEEHH-HHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCCTT
T ss_pred             ccchhhhcCcCCCCCceEEECCCcCCHH-HHHHHHHHcCCCceeeeecCCCCeEEEEEEhHHHHHHHhcccccccccccc
Confidence            35789999986432    4556788998 9999999999999999953 34689999999999753210           


Q ss_pred             -----------------CCCccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          289 -----------------TETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       289 -----------------~~~~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                                       ...+++++|.+++.++++++++.++++.|.+++.+.+||+|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~tv~~~~~l~~v~~~~~~~~~~~l~V~d  138 (169)
T d2j9la1          81 SIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH  138 (169)
T ss_dssp             CEEECSSSCCCCCTTCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE
T ss_pred             hhhhhcccchhhhhccccccchhhhccCCCEEECCCCcHHHHHHHHHhcCceEEEEEE
Confidence                             12357889989999999999999999999999999999987

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.63  E-value=3.4e-16  Score=133.89  Aligned_cols=104  Identities=13%  Similarity=0.136  Sum_probs=80.9

Q ss_pred             cccccccc-cccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCCC-----CCc-----
Q 013310          224 TEKTAEEA-MTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET-----ETP-----  292 (445)
Q Consensus       224 ~~~~V~di-Mtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~~-----~~~-----  292 (445)
                      -+++++|+ +.+.+++++++.++++. ++++.|.+++++++||++++ ++++|+++.+|+++...+.     ...     
T Consensus         4 ~~~~i~~l~~~~~~~v~tv~~~~~v~-~a~~~m~~~~~~~ipVvd~~-~~~vG~it~~Di~~~~~~~~~~~~~~~~~~~~   81 (140)
T d2nyca1           4 LKIPIGDLNIITQDNMKSCQMTTPVI-DVIQMLTQGRVSSVPIIDEN-GYLINVYEAYDVLGLIKGGIYNDLSLSVGEAL   81 (140)
T ss_dssp             GGSBGGGSSCCBCSSCCCBCTTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHHHTC----CCSBHHHHH
T ss_pred             ccCcHHHhCCccCCCCEEEcCcCcHH-HHHHHHHHcCCcEEEEEecC-CeEcceehhhHHHHHHhhccccccccchhhhh
Confidence            34567775 33457899999999998 99999999999999999865 7899999999998753221     111     


Q ss_pred             -cccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          293 -VSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       293 -v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                       ....+..+++++++++++.++++.|.+++.+.+||+|
T Consensus        82 ~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~VVd  119 (140)
T d2nyca1          82 MRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVD  119 (140)
T ss_dssp             HHCC------CEECTTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             hhhhhcccccEEECCCCcHHHHHHHHHhcCeeEEEEEe
Confidence             1233457788999999999999999999999999999

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=99.58  E-value=2.1e-15  Score=129.29  Aligned_cols=99  Identities=18%  Similarity=0.245  Sum_probs=82.5

Q ss_pred             cccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCCC-----------------
Q 013310          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE-----------------  288 (445)
Q Consensus       226 ~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~~-----------------  288 (445)
                      ..|.++|+.  +++++++++++. ++++.|.+++++++||+|++ ++++|+++.+|+++....                 
T Consensus         4 ~~v~~~m~~--~p~~v~~~~~v~-~a~~~m~~~~~~~ipVvd~~-~~~vGiis~~Dl~~~~~~~~~~~~~~~~~~~~~~~   79 (145)
T d1o50a3           4 KDVCKLISL--KPTVVEEDTPIE-EIVDRILEDPVTRTVYVARD-NKLVGMIPVMHLLKVSGFHFFGFIPKEELIRSSMK   79 (145)
T ss_dssp             HHHTTSSCC--CCEEECTTCBHH-HHHHHHHHSTTCCEEEEEET-TEEEEEEEHHHHHHHHHHHHHCCCC-------CCC
T ss_pred             eEhHHhCCC--CCEEECCcCcHH-HHHHHHHHcCCceEEEeccC-cceeeeeccchhhhhhhcccccccchhHHHHhhhh
Confidence            346778874  678999999998 99999999999999999865 799999999999753210                 


Q ss_pred             --CCCccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          289 --TETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       289 --~~~~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                        ...+++++ +++++++++++++.+|++.|.+++.+.+||+|
T Consensus        80 ~~~~~~~~~~-~~~~~~i~~~~~l~~a~~~m~~~~i~~lpVVd  121 (145)
T d1o50a3          80 RLIAKNASEI-MLDPVYVHMDTPLEEALKLMIDNNIQEMPVVD  121 (145)
T ss_dssp             CCSSCBHHHH-CBCCCCBCTTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             hccccCHHHH-cCCCEEEcCCCCHHHHHHHHHHcCceEEEEEe
Confidence              11345555 45678899999999999999999999999999

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.57  E-value=2.6e-16  Score=131.30  Aligned_cols=92  Identities=10%  Similarity=0.242  Sum_probs=42.3

Q ss_pred             ceEEeeCCCCccHHHHHHHHHcCCcEEEeEeC--CCCCEEEEEEhhhhhccCCC-CCCccccccc--cCCceeCCCCCHH
Q 013310          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSG--NPKNIIGLLLVKSLLTVRPE-TETPVSAVSI--RRIPRVPSDMPLY  311 (445)
Q Consensus       237 ~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~--~~~~ivGiv~~kDll~~~~~-~~~~v~~im~--~~~~~V~~~~~l~  311 (445)
                      +++++++++++. ++++.|.+++++++||+++  ..++++|+++.+|+...... .+.++..+|.  .+++++++++++.
T Consensus         5 ~pvtv~~~~tl~-da~~~m~~~~i~~~pVvd~~~~~~~lvGivT~~Di~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~   83 (120)
T d1jr1a4           5 DPVVLSPKDRVR-DVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDFLKEEEHDRFLEEIMTKREDLVVAPAGITLK   83 (120)
T ss_dssp             TTCC----CCCC---CCBC---------------CTTCCC----------------------CCSBTTTSCCEETTCCHH
T ss_pred             CCEEECCcCCHH-HHHHHHHHhCCCeEEEeeccccCCeEeeeeeeeeeeehhccccCceeEEEEeeccCceEECCCCCHH
Confidence            567899999999 9999999999999999985  24789999999998654332 2344555553  4678899999999


Q ss_pred             HHHHHHhhCCCeEEEEEc
Q 013310          312 DILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       312 ~al~~m~~~~~~~a~Vvd  329 (445)
                      +|++.|++++.+.+||+|
T Consensus        84 ~a~~~m~~~~i~~lpVVd  101 (120)
T d1jr1a4          84 EANEILQRSKKGKLPIVN  101 (120)
T ss_dssp             HHHHHTCSCC---CEEEE
T ss_pred             HHHHHHHHcCccEEEEEc
Confidence            999999999999999999

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.30  E-value=7.6e-07  Score=73.75  Aligned_cols=48  Identities=8%  Similarity=0.111  Sum_probs=41.4

Q ss_pred             CccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEccCCCccCCC
Q 013310          291 TPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLP  338 (445)
Q Consensus       291 ~~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Giv  338 (445)
                      .||+++|.+++.++++++++.+|++.|.+++.+.+||+|+.|.+.|++
T Consensus         5 ~pV~~im~~~~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd~~~~~~Gii   52 (132)
T d2yzia1           5 APIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFF   52 (132)
T ss_dssp             SBGGGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEE
T ss_pred             CcHHHHcCCCCeEECCcCcHHHHHHHHHHcCCcEEEEecccceeeeee
Confidence            589999999999999999999999999999999999999433333333

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.27  E-value=2.4e-07  Score=76.54  Aligned_cols=60  Identities=15%  Similarity=0.280  Sum_probs=53.6

Q ss_pred             CcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccC
Q 013310          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR  286 (445)
Q Consensus       223 l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~  286 (445)
                      -.+.+|+++|++  ++.++++++++. ++++.|.++++.++||+|++ ++++|+|+.+|++...
T Consensus        62 ~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lPVVD~~-g~lvGiIt~~Dil~~i  121 (127)
T d2ouxa2          62 DDDTLIADILNE--RVISVHVGDDQE-DVAQTIRDYDFLAVPVTDYD-DHLLGIVTVDDIIDVI  121 (127)
T ss_dssp             CTTSBHHHHSBS--CCCCEETTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHH
T ss_pred             cccEEhhhhccC--CCccCCCCCCHH-HHHHHHHHhCCEEEEEEeCC-CEEEEEEEHHHHHHHH
Confidence            356889999985  577899999998 99999999999999999875 8999999999998653

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.23  E-value=2.8e-07  Score=75.48  Aligned_cols=47  Identities=4%  Similarity=-0.013  Sum_probs=39.8

Q ss_pred             ccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEccCCCccCCC
Q 013310          292 PVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLP  338 (445)
Q Consensus       292 ~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Giv  338 (445)
                      +++++|.++++++.+++++.+|++.|.+++.+.+||+|+.|+++|++
T Consensus         2 t~~diM~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~~~Gii   48 (123)
T d1y5ha3           2 TARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGML   48 (123)
T ss_dssp             CHHHHSEETCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEE
T ss_pred             CHHHhcCCCCcEECCcCcHHHHHHHHHHcCCCceEEEeccchhhhhh
Confidence            57889999999999999999999999999999999999433333333

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.22  E-value=5.4e-07  Score=76.58  Aligned_cols=59  Identities=17%  Similarity=0.147  Sum_probs=51.8

Q ss_pred             CCccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEccCCCccCCCCCCCCCcccccc
Q 013310          290 ETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNE  350 (445)
Q Consensus       290 ~~~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Giv~~T~~di~~~i~  350 (445)
                      +.+++++|.++++++++++++.+|++.|.+++.+.+||+|+.|+++|++  |..|+++...
T Consensus         3 ~~~v~~~m~r~v~~v~~~~~l~~a~~~m~~~~~~~lPVvd~~~~lvG~i--t~~Dl~~~~~   61 (156)
T d2yzqa1           3 GVEIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIV--DETDLLRDSE   61 (156)
T ss_dssp             GCBSTTTSBSCCCCEETTSBHHHHHHHHHTCSSSEEEEECTTSCEEEEE--EGGGGGGCGG
T ss_pred             CCCHHHHhcCCCeEECCcCcHHHHHHHHHHcCCCEEEEEeCCCCceeEE--eeeechhhhc
Confidence            3678899999999999999999999999999999999999888888888  7777765443

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=98.18  E-value=9.7e-07  Score=73.71  Aligned_cols=38  Identities=13%  Similarity=0.077  Sum_probs=36.4

Q ss_pred             ccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          292 PVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       292 ~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      +++++|.+++.++++++++.+|++.|.+++.+.+||+|
T Consensus         3 ~v~diM~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVvd   40 (139)
T d2o16a3           3 KVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVD   40 (139)
T ss_dssp             BGGGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             EHHHhCcCCCeEECCcCCHHHHHHHHHHcCCCeeeeec
Confidence            57899999999999999999999999999999999999

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.17  E-value=5.7e-07  Score=74.53  Aligned_cols=60  Identities=18%  Similarity=0.278  Sum_probs=53.7

Q ss_pred             cccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCC
Q 013310          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP  287 (445)
Q Consensus       224 ~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~  287 (445)
                      .+.+++++|++  ++.++++++++. ++++.|.+++.+++||+|++ ++++|+|+.+|+++...
T Consensus        72 ~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~i~~lpVvd~~-g~lvGiit~~Dil~~~~  131 (135)
T d3ddja2          72 STTPIIDYMTP--NPVTVYNTSDEF-TAINIMVTRNFGSLPVVDIN-DKPVGIVTEREFLLLYK  131 (135)
T ss_dssp             HTSBGGGTSEE--SCCCEETTSCHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHGGGGG
T ss_pred             ccCCHHHHhCC--ccceEEeccccc-hhhhhhhhcceeEEEEEeCC-CEEEEEEEHHHHHHHHH
Confidence            45789999986  678999999998 99999999999999999875 89999999999998653

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.12  E-value=1.7e-06  Score=72.56  Aligned_cols=54  Identities=11%  Similarity=0.097  Sum_probs=44.0

Q ss_pred             CccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEccCCCccCCCCCCCCCcc
Q 013310          291 TPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKP  346 (445)
Q Consensus       291 ~~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Giv~~T~~di~  346 (445)
                      .+|+++|.+++.+|++++++.+|++.|.+++.+.+||+|+.|++.|++  |.+|++
T Consensus         3 m~v~dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~~V~d~~~~~~Gii--t~~di~   56 (142)
T d1pvma4           3 MRVEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLL--SERSII   56 (142)
T ss_dssp             CBGGGTSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEE--EHHHHH
T ss_pred             EEHHHhCCCCCcEECCcCcHHHHHHHHHHCCCceEeeeccCCcccceE--Eeechh
Confidence            357899999999999999999999999999999999999544444444  444444

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=98.08  E-value=2e-06  Score=71.03  Aligned_cols=39  Identities=15%  Similarity=0.127  Sum_probs=35.8

Q ss_pred             Ccccccc--ccCCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          291 TPVSAVS--IRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       291 ~~v~~im--~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      .+|+++|  .+++.++.+++++.+|++.|.+++.+.+||+|
T Consensus         2 ~tv~~~mip~~~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd   42 (132)
T d1yava3           2 ATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLD   42 (132)
T ss_dssp             CBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEEC
T ss_pred             CCHHHccccccceEEEcCCCCHHHHHHHHHhhCCCceEEee
Confidence            4678888  57889999999999999999999999999999

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=98.05  E-value=2e-06  Score=72.28  Aligned_cols=60  Identities=17%  Similarity=0.302  Sum_probs=53.8

Q ss_pred             CcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccC
Q 013310          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR  286 (445)
Q Consensus       223 l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~  286 (445)
                      ..+.+++++|++  +++++++++++. ++++.|.++++.++||+|++ ++++|+|+.+|+++..
T Consensus        62 ~~~~~v~~im~~--~~~~v~~~~~~~-~a~~~m~~~~~~~lPVVd~~-g~lvGiIt~~Dil~~l  121 (144)
T d2yvxa2          62 DPRTRVAEIMNP--KVVYVRTDTDQE-EVARLMADYDFTVLPVVDEE-GRLVGIVTVDDVLDVL  121 (144)
T ss_dssp             CTTCBSTTTSBS--SCCCEESSCCHH-HHHHHHHHSCCSEEEEECSS-CBEEEEEEHHHHHHHH
T ss_pred             ccccchHHhccc--CCccCCCCChHH-HHHHHHHHcCCCEEEEEeEC-CEEEEEEEHHHHHHHH
Confidence            456789999985  678899999998 99999999999999999875 8999999999998764

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=98.05  E-value=3.2e-06  Score=69.32  Aligned_cols=47  Identities=19%  Similarity=0.146  Sum_probs=40.3

Q ss_pred             CccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEccCCCccCCC
Q 013310          291 TPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLP  338 (445)
Q Consensus       291 ~~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Giv  338 (445)
                      ..|+++|.++++++++++++.+|++.|.+++.+.+||+|+ |++.|++
T Consensus         4 ~~V~d~m~~~~v~v~~~~tl~~a~~~m~~~~~~~~pV~d~-~~~~Giv   50 (127)
T d2ef7a1           4 EIVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDG-NKPVGII   50 (127)
T ss_dssp             CBGGGTSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEET-TEEEEEE
T ss_pred             cCHHHhCCCCCeEECCcCcHHHHHHHHHHcCCceEEeecc-cchhhhc
Confidence            5688999999999999999999999999999999999982 3444444

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.05  E-value=2.4e-06  Score=69.41  Aligned_cols=58  Identities=22%  Similarity=0.294  Sum_probs=52.0

Q ss_pred             CcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhcc
Q 013310          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTV  285 (445)
Q Consensus       223 l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~  285 (445)
                      +.+.+|+++|++  ++.++++++++. ++++.|.+++.+++||.++  ++++|+++.+|++++
T Consensus        61 ~~~~~v~~~m~~--~~~~v~~~~~l~-~a~~~m~~~~~~~l~V~~~--~~l~Givt~~Dil~A  118 (120)
T d1pbja3          61 LAEVKVWEVMER--DLVTISPRATIK-EAAEKMVKNVVWRLLVEED--DEIIGVISATDILRA  118 (120)
T ss_dssp             TTTSBHHHHCBC--GGGEECTTSCHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHH
T ss_pred             ccceeEeeeccc--ccccccchhHHH-HHHHHHHHcCCeEEEEEEC--CEEEEEEEHHHHHhc
Confidence            466789999975  688999999998 9999999999999999874  799999999999875

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.04  E-value=6e-07  Score=73.22  Aligned_cols=59  Identities=19%  Similarity=0.258  Sum_probs=45.8

Q ss_pred             ccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhcc
Q 013310          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTV  285 (445)
Q Consensus       225 ~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~  285 (445)
                      +.++.++|+.+.++++++++.++. ++++.|.+++++++||++++ ++++|+|+.+|+++.
T Consensus        60 ~~~~~~~~~~~~~~~~v~~~~~~~-~a~~~m~~~~i~~lpVVd~~-~~lvGiiT~~Di~k~  118 (120)
T d1jr1a4          60 DRFLEEIMTKREDLVVAPAGITLK-EANEILQRSKKGKLPIVNEN-DELVAIIARTDLKKN  118 (120)
T ss_dssp             ------CCSBTTTSCCEETTCCHH-HHHHHTCSCC---CEEEETT-TEEEEEECHHHHHHH
T ss_pred             CceeEEEEeeccCceEECCCCCHH-HHHHHHHHcCccEEEEEcCC-CEEEEEEEHHHhhhc
Confidence            457888888877899999999998 99999999999999999975 799999999999864

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.99  E-value=4.6e-06  Score=68.26  Aligned_cols=49  Identities=10%  Similarity=-0.040  Sum_probs=40.3

Q ss_pred             cccCCceeCCCCCHHHHHHHHhhCCCeEEEEEcc--CCCccCCCCCCCCCccc
Q 013310          297 SIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKA--KGKSKTLPPMTDGKKPK  347 (445)
Q Consensus       297 m~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde--~G~~~Giv~~T~~di~~  347 (445)
                      |+++++++++++++.+|++.|.+++.+.+||+|+  +|+++|+|  |.+|+..
T Consensus         3 mi~dpvtv~~~~tv~~a~~~m~~~~~~~~pVvD~~~~~~lvGiv--t~~Di~~   53 (126)
T d1zfja4           3 VIIDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGII--TNRDMRF   53 (126)
T ss_dssp             TSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEE--EHHHHHH
T ss_pred             CEeCceEECCCCCHHHHHHHHHHhCCCcEEEEeeccCCeEEEEe--EHHHHHH
Confidence            6677889999999999999999999999999995  45566666  5555543

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=97.97  E-value=4.4e-06  Score=68.46  Aligned_cols=57  Identities=25%  Similarity=0.377  Sum_probs=51.3

Q ss_pred             cccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhcc
Q 013310          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTV  285 (445)
Q Consensus       224 ~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~  285 (445)
                      .+.+++++|++  ++.++++++++. ++++.|.+++.+++||+|+  ++++|+|+.+|++++
T Consensus        68 ~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~--~~~~GiIt~~Dil~~  124 (127)
T d2rc3a1          68 KDTQVKEIMTR--QVAYVDLNNTNE-DCMALITEMRVRHLPVLDD--GKVIGLLSIGDLVKD  124 (127)
T ss_dssp             GGSBGGGTSBC--SCCCBCTTCBHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHH
T ss_pred             cceeEeeeccc--eeEEeccCccHH-HHHHHHHHCCCcEEEEEEC--CEEEEEEEHHHHHHH
Confidence            34689999985  678999999998 9999999999999999984  789999999999875

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.97  E-value=3.7e-06  Score=68.46  Aligned_cols=60  Identities=18%  Similarity=0.177  Sum_probs=48.9

Q ss_pred             cccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccCC
Q 013310          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP  287 (445)
Q Consensus       224 ~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~~  287 (445)
                      .+.+++++|.+  +++++++++++. ++++.|.+++.+++||+|++ ++++|+|+.+|++++..
T Consensus        58 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~lpVvd~~-~~liGiit~~dil~~~~  117 (122)
T d2yzqa2          58 DEEQLAMLVKR--DVPVVKENDTLK-KAAKLMLEYDYRRVVVVDSK-GKPVGILTVGDIIRRYF  117 (122)
T ss_dssp             ------CCCBS--CCCEEETTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHTT
T ss_pred             cccchhhcccc--ceeecchhhHHH-HHHHHHHHcCcEEEEEEeCC-CEEEEEEEHHHHHHHHH
Confidence            45578999985  678999999998 99999999999999999875 89999999999987643

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=97.97  E-value=3.3e-06  Score=70.20  Aligned_cols=38  Identities=11%  Similarity=0.197  Sum_probs=36.7

Q ss_pred             ccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          292 PVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       292 ~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      ||+++|.+++.+|++++++.+|++.|.+++.+.+||+|
T Consensus         3 ~V~~iMt~~v~~v~~~~tl~~a~~~m~~~~~~~ipVv~   40 (141)
T d3ddja1           3 PVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVID   40 (141)
T ss_dssp             BHHHHSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             eeHHhCcCCCeEEcCcCcHHHHHHHHHHcCCCeeeccc
Confidence            68899999999999999999999999999999999999

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=97.94  E-value=5.8e-06  Score=67.10  Aligned_cols=55  Identities=13%  Similarity=0.168  Sum_probs=51.0

Q ss_pred             ccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEccCCCccCCCCCCCCCcccc
Q 013310          292 PVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKL  348 (445)
Q Consensus       292 ~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Giv~~T~~di~~~  348 (445)
                      +++++|.++++++++++++.++++.|.+++.+.+||+|+.|.+.|++  |.+|+++.
T Consensus         2 ~v~~~m~~~~~~v~~~~tv~ea~~~m~~~~~~~v~Vvd~~~~~~Gii--~~~dl~~~   56 (121)
T d1vr9a3           2 KVKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVV--NKEDLLDL   56 (121)
T ss_dssp             BGGGGCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEE--EGGGGTTS
T ss_pred             CchhhhcCCCeEECCCCCHHHHHHhhhhcCcEEEEEEeCCceeEEEe--ehhhhhhh
Confidence            47789999999999999999999999999999999999999999999  88888743

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=97.92  E-value=9.6e-06  Score=68.45  Aligned_cols=94  Identities=14%  Similarity=0.127  Sum_probs=68.0

Q ss_pred             cccHHHHHHHHHHhhhhhccC----CCC-CHHHHHHHHHhhcCcccccccccccCCceEEeeCCCCccHHHHHHHHHcCC
Q 013310          186 LFRRAQLKALVTIHSQEAGKG----GEL-THDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGH  260 (445)
Q Consensus       186 ~~s~eEl~~li~~~~~e~~~~----g~l-~~~E~~~l~~~~~l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~  260 (445)
                      .++..++...+..... ....    ... ..................++++|.+  .++++++++++. ++++.|.++++
T Consensus        59 ~is~~dl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~tv~~~~~l~-~~~~~m~~~~v  134 (160)
T d2d4za3          59 SIDRTEVEGLLQRRIS-AYRRQPFEEMLTLEEIYRWEQREKNVVVNFETCRIDQ--SPFQLVEGTSLQ-KTHTLFSLLGL  134 (160)
T ss_dssp             EEEHHHHHHHHHHHHH-TTSSSCCCSCCBHHHHHHHHHHHTTCBCCTTSSCEEC--CSCCBCTTCBHH-HHHHHHHHHTC
T ss_pred             cchHHHHHHHHhhccc-cccccchhhccccchhhhhhhhhcccccceeeecccC--CCEEEcCCCCHH-HHHHHHHHcCC
Confidence            4577888777653221 1111    111 1223334445556677788999986  577899999998 99999999999


Q ss_pred             cEEEeEeCCCCCEEEEEEhhhhhcc
Q 013310          261 SRVPVYSGNPKNIIGLLLVKSLLTV  285 (445)
Q Consensus       261 s~~PV~~~~~~~ivGiv~~kDll~~  285 (445)
                      +++||+++  |+++|+|+.+|++++
T Consensus       135 ~~l~V~d~--g~lvGiIt~~Di~k~  157 (160)
T d2d4za3         135 DRAYVTSM--GKLVGVVALAEIQAA  157 (160)
T ss_dssp             SEEEEEET--TEEEEEEEHHHHHHH
T ss_pred             eEEEEEEC--CEEEEEEEHHHHHHH
Confidence            99999874  799999999999875

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.86  E-value=6.1e-06  Score=67.72  Aligned_cols=38  Identities=16%  Similarity=0.232  Sum_probs=35.9

Q ss_pred             ccccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          292 PVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       292 ~v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      +|+++|.++++++++++++.+|++.|.+++.+.+||++
T Consensus         2 ~V~dim~~~~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~   39 (131)
T d2riha1           2 RTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTA   39 (131)
T ss_dssp             BGGGGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEE
T ss_pred             CHHHhccCCCEEECCCCcHHHHHHHHHHhCCCcEEEEE
Confidence            57899999999999999999999999999999999994

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=97.85  E-value=7.9e-06  Score=68.13  Aligned_cols=37  Identities=16%  Similarity=0.218  Sum_probs=34.4

Q ss_pred             cccccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          293 VSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       293 v~~im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      +.++|..+++++++++++.+|++.|.+++.+.+||+|
T Consensus         6 v~~~m~~~p~~v~~~~~v~~a~~~m~~~~~~~ipVvd   42 (145)
T d1o50a3           6 VCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVA   42 (145)
T ss_dssp             HTTSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEE
T ss_pred             hHHhCCCCCEEECCcCcHHHHHHHHHHcCCceEEEec
Confidence            4567888999999999999999999999999999999

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=9.6e-06  Score=69.65  Aligned_cols=59  Identities=12%  Similarity=0.151  Sum_probs=52.5

Q ss_pred             CcccccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccC
Q 013310          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR  286 (445)
Q Consensus       223 l~~~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~  286 (445)
                      ....+++++|++  +++++++++++. ++++.|.+++.+++||.++  ++++|+|+.+|++++.
T Consensus        97 ~~~~~v~~im~~--~~~tv~~~~~l~-~v~~~~~~~~~~~l~V~d~--g~lvGiIt~~Dil~~l  155 (169)
T d2j9la1          97 PPTLKLRNILDL--SPFTVTDLTPME-IVVDIFRKLGLRQCLVTHN--GRLLGIITKKDVLKHI  155 (169)
T ss_dssp             CCCEECGGGEES--SCCEEETTSBHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHH
T ss_pred             ccccchhhhccC--CCEEECCCCcHH-HHHHHHHhcCceEEEEEEC--CEEEEEEEHHHHHHHH
Confidence            356789999986  578999999998 9999999999999999875  6899999999999864

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.73  E-value=2.6e-05  Score=64.66  Aligned_cols=34  Identities=9%  Similarity=0.341  Sum_probs=31.9

Q ss_pred             ccccCCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          296 VSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       296 im~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      +|..++.++.+++++.+|++.|.+++.+.+||+|
T Consensus        14 ~~~~~v~tv~~~~~v~~a~~~m~~~~~~~ipVvd   47 (140)
T d2nyca1          14 ITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIID   47 (140)
T ss_dssp             CBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             ccCCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEe
Confidence            4568899999999999999999999999999999

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=97.61  E-value=4.2e-05  Score=64.36  Aligned_cols=38  Identities=13%  Similarity=0.419  Sum_probs=32.9

Q ss_pred             ccccccc---cCCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          292 PVSAVSI---RRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       292 ~v~~im~---~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      |+++++.   .+++++.+++++.+|++.|.+++.+.+||+|
T Consensus         2 pl~~~~ig~~~~vv~v~~~~~v~~a~~~m~~~~~~~lpVvd   42 (153)
T d2ooxe2           2 PLNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVN   42 (153)
T ss_dssp             BGGGTCCSBCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEEC
T ss_pred             CHHHcCCCCCCCCeEEeCcCcHHHHHHHHHHcCcceEeeec
Confidence            4455543   4788999999999999999999999999999

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.60  E-value=1.3e-05  Score=66.77  Aligned_cols=121  Identities=17%  Similarity=0.144  Sum_probs=92.0

Q ss_pred             ccCCceeCCCCCHHHHHHHHhhCCCeEEEEEccCCCccCCCCCCCCCcccccccCCCCCCCCcccc---cccccCCCceE
Q 013310          298 IRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLL---SKQDEKTESVV  374 (445)
Q Consensus       298 ~~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvde~G~~~Giv~~T~~di~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~  374 (445)
                      .+++++|++++++.+|++.|.+++.+.+||+|++|+++|++  |..|+++.+..............   .........+.
T Consensus        19 ~~~v~~v~~~~tv~eal~~m~~~~~~~lpVvd~~~~~~Gvi--t~~di~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~   96 (145)
T d2v8qe1          19 YANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIY--SKFDVINLAAEKTYNNLDVSVTKALQHRSHYFEGVLK   96 (145)
T ss_dssp             CSSCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEE--EGGGTGGGGGSSCCCCCSSBHHHHGGGCCSCCCSCCE
T ss_pred             CCCceEEcCcCcHHHHHHHHHHcCCCcccccccCCceEEEE--EcchhhhhhhcccccchhhhhhhccchhhhccCCCeE
Confidence            36789999999999999999999999999999999999999  99999988876544332211111   11223345567


Q ss_pred             eeccCCCccccccccCCCCCCCCCccccccccCCCCCCceEEEeehhhHHHHHhc
Q 013310          375 VDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELLQ  429 (445)
Q Consensus       375 v~~~~~i~~~~~~~~~~~~~~~~tl~g~~~~~~~~e~g~l~GIVT~~Dile~l~g  429 (445)
                      +.++.++.+....+..+.....-+++         ++|+++|+||.+||++.++.
T Consensus        97 v~~~~~l~~~~~~m~~~~~~~l~Vvd---------~~g~l~GiVt~~dii~~lv~  142 (145)
T d2v8qe1          97 CYLHETLEAIINRLVEAEVHRLVVVD---------EHDVVKGIVSLSDILQALVL  142 (145)
T ss_dssp             ECTTSBHHHHHHHHHHHTCSEEEEEC---------TTSBEEEEEEHHHHHHHHHS
T ss_pred             ECCCCcHHHHHHHHHHcCceEEEEEc---------cCCEEEEEEEHHHHHHHHHh
Confidence            88888888887777654443333344         78999999999999999983

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.57  E-value=1.5e-05  Score=67.45  Aligned_cols=58  Identities=17%  Similarity=0.214  Sum_probs=50.8

Q ss_pred             cccccccccCCceEEeeCCCCccHHHHHHHHHcCCcEEEeEeCCCCCEEEEEEhhhhhccC
Q 013310          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR  286 (445)
Q Consensus       226 ~~V~diMtpr~~vv~v~~~~sl~~e~l~~~~~~~~s~~PV~~~~~~~ivGiv~~kDll~~~  286 (445)
                      ..++++|.+  +++++++++++. ++++.|.+++.+++||+|++.++++|+|+.+|+++++
T Consensus        96 ~~~~~~~~~--~~~~v~~~~~l~-~v~~~m~~~~~~~v~Vvd~~~g~~~GivT~~dilk~l  153 (159)
T d2v8qe2          96 EVYLQDSFK--PLVCISPNASLF-DAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFL  153 (159)
T ss_dssp             HHHSSSSCC--CCCCBCTTSBHH-HHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHH
T ss_pred             ceeeeeecc--ceEEECCCCcHH-HHHHHHHHhCCeEEEEEECCCCeEEEEEeHHHHHHHH
Confidence            345778875  688999999998 9999999999999999986668999999999999864

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=97.25  E-value=7.7e-05  Score=64.14  Aligned_cols=39  Identities=10%  Similarity=-0.075  Sum_probs=35.2

Q ss_pred             Cccccccc--cCCceeCCCCCHHHHHHHHhhCCCeEEEEEc
Q 013310          291 TPVSAVSI--RRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (445)
Q Consensus       291 ~~v~~im~--~~~~~V~~~~~l~~al~~m~~~~~~~a~Vvd  329 (445)
                      ..+.|+|.  .+++++++++++.+|++.|.+++.+.+||+|
T Consensus        20 ~~~~dvm~~s~~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd   60 (179)
T d2ooxe1          20 RTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWD   60 (179)
T ss_dssp             SBHHHHSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEE
T ss_pred             CEeeeeCCCCCcEEEEECcchHHHHHHHHHHcCCCeEEEEe
Confidence            45778875  5788999999999999999999999999998

>d2o1ra1 d.145.1.4 (A:1-78) Hypothetical protein HI0107 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Hypothetical protein HI0107
species: Haemophilus influenzae [TaxId: 727]

Probab=96.06  E-value=0.00061  Score=50.45  Aligned_cols=46  Identities=24%  Similarity=0.192  Sum_probs=41.3

Q ss_pred             cCCCceEeeccCCCccccccccCCCCCC-CCCcccccc-ccCCCCCCc
Q 013310          368 EKTESVVVDVDRPLSSGSMNRLSSSQRS-DSTTNGLIY-ASEDIEDGE  413 (445)
Q Consensus       368 ~~~~~~~v~~~~~i~~~~~~~~~~~~~~-~~tl~g~~~-~~~~~e~g~  413 (445)
                      +..+.|.++|+++++|+++.++..+|+. +.|++||++ .++++|..+
T Consensus         3 ~~Dg~~~v~G~~~l~dl~~~l~~~l~~~~~~Ti~G~v~~~lg~iP~~G   50 (78)
T d2o1ra1           3 QSDGSMIIDGSANLRDLNKMFNWELDTEDARTFNGLILEHLEEIPDEG   50 (78)
T ss_dssp             CTTSCEEEETTCBHHHHHHHHCCCCCCSSCSBHHHHHHHHCSSCCCTT
T ss_pred             ecCCEEEEEeeCCHHHHHHHHCCCCCCccchHHHHHHHHHhCcCCCCC
Confidence            4567899999999999999999999977 999999999 999998643

>d2rk5a1 d.145.1.4 (A:5-88) Putative hemolysin SMU1693 {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Putative hemolysin SMU1693
species: Streptococcus mutans [TaxId: 1309]

Probab=95.36  E-value=0.0011  Score=49.60  Aligned_cols=44  Identities=11%  Similarity=-0.004  Sum_probs=40.5

Q ss_pred             cCCCceEeeccCCCccccccccCCCCCC-CCCcccccc-ccCCCCC
Q 013310          368 EKTESVVVDVDRPLSSGSMNRLSSSQRS-DSTTNGLIY-ASEDIED  411 (445)
Q Consensus       368 ~~~~~~~v~~~~~i~~~~~~~~~~~~~~-~~tl~g~~~-~~~~~e~  411 (445)
                      ...+.|.++|+++++|+++.++..++.. +.|++||++ .++++|.
T Consensus         3 i~d~~~~v~G~~~l~dl~~~l~~~l~~~~~dTlgG~v~~~lg~iP~   48 (84)
T d2rk5a1           3 IADNTYIVLGTMTLNDFNEYFETDLESDNVDTIAGFYLTGVGTIPS   48 (84)
T ss_dssp             EETTEEEEETTSBHHHHHHHHTCCCCCTTCCBHHHHHHHHHCSCCC
T ss_pred             ecCCEEEEEeeeEHHHHHHHhCCCcccccchhHHHHHHHHhCcCCC
Confidence            4567899999999999999999999877 999999999 9999987

>d2p3ha1 d.145.1.4 (A:5-102) Uncharacterized protein Cgl1194/Cg1349 {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Uncharacterized protein Cgl1194/Cg1349
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=94.97  E-value=0.0018  Score=50.04  Aligned_cols=50  Identities=20%  Similarity=0.320  Sum_probs=43.8

Q ss_pred             cccCCCceEeeccCCCccccccccCCCCCC-CCCcccccc-ccCCCCC-CceE
Q 013310          366 QDEKTESVVVDVDRPLSSGSMNRLSSSQRS-DSTTNGLIY-ASEDIED-GEVI  415 (445)
Q Consensus       366 ~~~~~~~~~v~~~~~i~~~~~~~~~~~~~~-~~tl~g~~~-~~~~~e~-g~l~  415 (445)
                      .+...+.|.++|.++++++++.++...+.. +.|++||++ .++++|. |..+
T Consensus         4 ~~~~~~~~~v~G~~~l~dl~~~l~~~l~~~~~~Tl~G~~~~~lg~iP~~Ge~v   56 (98)
T d2p3ha1           4 TETSPDKWLIDGDTPLDEVERAIGYELPEGDYETISGLLFDHANALLKTGDVI   56 (98)
T ss_dssp             EEEETTEEEEETTCBHHHHHHHHTSCCCCSSCCBHHHHHHHHHCSCCCTTCEE
T ss_pred             EEeCCCEEEEEeccCHHHHHHHHCCCCCCCCccCHHHHHHHHHCcCCCCCCEE
Confidence            456778899999999999999999999877 999999999 9999987 4443

>d2r2za1 d.145.1.4 (A:5-88) Putative hemolysin EF0700 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Putative hemolysin EF0700
species: Enterococcus faecalis [TaxId: 1351]

Probab=94.88  E-value=0.0019  Score=48.34  Aligned_cols=46  Identities=15%  Similarity=0.021  Sum_probs=41.3

Q ss_pred             ccCCCceEeeccCCCccccccccCCCCCC-CCCcccccc-ccCCCCCC
Q 013310          367 DEKTESVVVDVDRPLSSGSMNRLSSSQRS-DSTTNGLIY-ASEDIEDG  412 (445)
Q Consensus       367 ~~~~~~~~v~~~~~i~~~~~~~~~~~~~~-~~tl~g~~~-~~~~~e~g  412 (445)
                      +...+.|.++|.+++.|+++.++..++.. +.|++||++ .++++|.-
T Consensus         5 ~i~~~~~~v~G~~~l~dl~~~l~~~l~~~~~~TigG~i~~~lg~iP~~   52 (84)
T d2r2za1           5 QVADNEYLVQGRMLIDEFNEVFETDLHMSDVDTMAGYLITALGTIPDE   52 (84)
T ss_dssp             EEETTEEEEETTSBHHHHHHHHTCCCCCTTCCBHHHHHHHHHSSCCCT
T ss_pred             EECCCEEEEEeeCCHHHHHHHHCcCCCCccchhHHHHHHHHhCcCCCC
Confidence            45667899999999999999999999877 899999999 99999763

>d2p13a1 d.145.1.4 (A:431-515) Uncharacterized protein NE2227 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Uncharacterized protein NE2227
species: Nitrosomonas europaea [TaxId: 915]

Probab=94.76  E-value=0.0027  Score=47.60  Aligned_cols=48  Identities=13%  Similarity=-0.010  Sum_probs=41.5

Q ss_pred             ccccCCCceEeeccCCCccccccccCCCCC---CCCCcccccc-ccCCCCCC
Q 013310          365 KQDEKTESVVVDVDRPLSSGSMNRLSSSQR---SDSTTNGLIY-ASEDIEDG  412 (445)
Q Consensus       365 ~~~~~~~~~~v~~~~~i~~~~~~~~~~~~~---~~~tl~g~~~-~~~~~e~g  412 (445)
                      ..+...+.|.++|.+++.|+++.++..++.   .+.|++||++ .++++|.-
T Consensus         5 ~~~~~dg~~~v~G~~~l~dl~~~l~~~l~~e~~~~~TlgG~i~~~lg~iP~~   56 (85)
T d2p13a1           5 AEQQADGTWLMDGWISIRKASNLLEHDLVDEAERYSTLGGYLLWQFGYIPAA   56 (85)
T ss_dssp             EEECTTSCEEEETTSBHHHHHHHHTSCCCCTTCCCCBHHHHHHHHHSSCCCT
T ss_pred             cEEcCCCeEEEEecCCHHHHHHHHCCCCCCccccceEHHHHHHHHhCcCCCC
Confidence            456678899999999999999999998763   2789999999 99999763

>d2plia1 d.145.1.4 (A:5-88) Uncharacterized protein NMB0537 {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Uncharacterized protein NMB0537
species: Neisseria meningitidis [TaxId: 487]

Probab=94.72  E-value=0.0022  Score=48.01  Aligned_cols=48  Identities=8%  Similarity=0.002  Sum_probs=42.9

Q ss_pred             ccccCCCceEeeccCCCccccccccCCCCCC-CCCcccccc-ccCCCCCC
Q 013310          365 KQDEKTESVVVDVDRPLSSGSMNRLSSSQRS-DSTTNGLIY-ASEDIEDG  412 (445)
Q Consensus       365 ~~~~~~~~~~v~~~~~i~~~~~~~~~~~~~~-~~tl~g~~~-~~~~~e~g  412 (445)
                      +.+...+.|.++|.+++.|+++.++...++. +.|++||++ .++++|.-
T Consensus         5 I~~~~~~~~~v~g~~~l~dl~~~~~~~l~~~~~~TigG~i~~~l~~iP~~   54 (84)
T d2plia1           5 IHAVSSERWRIHAATEIEDINTFFGTEYSSEEADTIGGLVIQELGHLPVR   54 (84)
T ss_dssp             EEEEETTEEEEETTCBHHHHHHHHCCCCCCSSCCBHHHHHHHHHSSCCCT
T ss_pred             eEEeCCCEEEEEecCCHHHHHHHhCCCCCccccHHHHHHHHHHhCccccC
Confidence            3456778999999999999999999998877 999999999 99999763

>d3deda1 d.145.1.4 (A:341-427) Probable hemolysin CV0231 {Chromobacterium violaceum [TaxId: 536]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Probable hemolysin CV0231
species: Chromobacterium violaceum [TaxId: 536]

Probab=94.64  E-value=0.0031  Score=47.46  Aligned_cols=47  Identities=13%  Similarity=-0.049  Sum_probs=40.3

Q ss_pred             cccCCCceEeeccCCCccccccccCCCC-----C-CCCCcccccc-ccCCCCCC
Q 013310          366 QDEKTESVVVDVDRPLSSGSMNRLSSSQ-----R-SDSTTNGLIY-ASEDIEDG  412 (445)
Q Consensus       366 ~~~~~~~~~v~~~~~i~~~~~~~~~~~~-----~-~~~tl~g~~~-~~~~~e~g  412 (445)
                      .+...+.|+++|.+++.++++.++...+     . .+.|++||++ .++++|..
T Consensus         4 v~~~dg~~~v~G~~~l~dl~~~~~~~l~~~~~~~~~~~TlgG~il~~lg~iP~~   57 (87)
T d3deda1           4 VQREDGSWLVDGMVSLDRFREFFELEAPLPGEAGGNIHTLAGVMLYQLGRVPSV   57 (87)
T ss_dssp             EECTTSCEEEETTCBHHHHHHHTTCCSCCTTGGGTCCCBHHHHHHHHHCSSCCT
T ss_pred             EEecCCeEEEEeeCCHHHHHHHhCCCCCCCccccccccCHHHHHHHHhCcCCCC
Confidence            3456788999999999999999998874     2 3889999999 99999873

>d2p4pa1 d.145.1.4 (A:1-82) Hypothetical protein HD1797 {Haemophilus ducreyi [TaxId: 730]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Hypothetical protein HD1797
species: Haemophilus ducreyi [TaxId: 730]

Probab=94.42  E-value=0.004  Score=46.28  Aligned_cols=45  Identities=16%  Similarity=0.166  Sum_probs=38.5

Q ss_pred             cCCCceEeeccCCCccccccccCCC--CCC-CCCcccccc-ccCCCCCC
Q 013310          368 EKTESVVVDVDRPLSSGSMNRLSSS--QRS-DSTTNGLIY-ASEDIEDG  412 (445)
Q Consensus       368 ~~~~~~~v~~~~~i~~~~~~~~~~~--~~~-~~tl~g~~~-~~~~~e~g  412 (445)
                      +..+.|+++|.+++.++++.++...  +.. +.|++||++ .++++|.-
T Consensus         3 ~dd~~~~v~g~~~l~d~~~~~~~~~~~~~~~~~TlgG~i~~~lg~iP~~   51 (82)
T d2p4pa1           3 RNEDSWLIDGATPLEDVMRALNIHTFPRDENYETIGGFMMYMLRKIPKK   51 (82)
T ss_dssp             CCCSEEEEETTSBHHHHHHHTTCCCSCCSCSSCBHHHHHHHHHCSCCCT
T ss_pred             EcCCEEEEEeeCCHHHHHHHhCCCCCCcccCccCHHHHHHHHhCcCCCC
Confidence            4578899999999999999999864  333 889999999 99999763

>d2oaia1 d.145.1.4 (A:5-91) Hemolysin TlyC {Xylella fastidiosa [TaxId: 2371]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Hemolysin TlyC
species: Xylella fastidiosa [TaxId: 2371]

Probab=93.90  E-value=0.0045  Score=46.54  Aligned_cols=48  Identities=13%  Similarity=-0.006  Sum_probs=38.1

Q ss_pred             ccccCCCceEeeccCCCccccccccCCCCCC----CCCcccccc-ccCCCCCC
Q 013310          365 KQDEKTESVVVDVDRPLSSGSMNRLSSSQRS----DSTTNGLIY-ASEDIEDG  412 (445)
Q Consensus       365 ~~~~~~~~~~v~~~~~i~~~~~~~~~~~~~~----~~tl~g~~~-~~~~~e~g  412 (445)
                      +.+...++|.++|.++++++++.++..++..    +.|++||++ .++++|.-
T Consensus         5 i~~~~dg~~~v~G~~~l~dl~~~l~~~l~~~e~~~~~Tl~G~i~~~lg~iP~~   57 (87)
T d2oaia1           5 MVTREDGSFLIDGTLPIEELREVLGAELPDGEENNYHTLAGMCISYFGRIPHV   57 (87)
T ss_dssp             EEECTTSCEEEETTCBHHHHHHHHTC-------CCCSBHHHHHHHHHSSCCCT
T ss_pred             eEEcCCCEEEEEecCCHHHHHHHHCCCCCcccccccccHHHHHHHHhCcCCCC
Confidence            3456678899999999999999999988532    789999999 99999763

>d2o3ga1 d.145.1.4 (A:180-255) Putative protein NMB1485 {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Putative protein NMB1485
species: Neisseria meningitidis [TaxId: 487]

Probab=93.90  E-value=0.0055  Score=44.81  Aligned_cols=42  Identities=21%  Similarity=0.083  Sum_probs=36.9

Q ss_pred             ceEeeccCCCccccccccCCCCCC---CCCcccccc-ccCCCCCCc
Q 013310          372 SVVVDVDRPLSSGSMNRLSSSQRS---DSTTNGLIY-ASEDIEDGE  413 (445)
Q Consensus       372 ~~~v~~~~~i~~~~~~~~~~~~~~---~~tl~g~~~-~~~~~e~g~  413 (445)
                      +|.++|+++++|+++.++...++.   +.|++||++ .++++|.-+
T Consensus         2 s~~vdG~~~i~dl~~~l~~~~~~~~~~~~Ti~G~vl~~lg~iP~~G   47 (76)
T d2o3ga1           2 SLTVEGALEYVELAPQLNLPQQEEDADFHTVAGLIMEELQTIPDVG   47 (76)
T ss_dssp             CSEEETTCBHHHHTTTTTCCCCCTTCSCSBHHHHHHHHHTSCCCTT
T ss_pred             eEEEEcCCCHHHHHHHHCcCCCccccccccHHHHHHHHhCcCCCCC
Confidence            689999999999999999988743   679999999 999997643

>d2plsa1 d.145.1.4 (A:345-428) Hypothetical protein CT0541 {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Hypothetical protein CT0541
species: Chlorobium tepidum [TaxId: 1097]

Probab=93.77  E-value=0.0058  Score=45.54  Aligned_cols=46  Identities=11%  Similarity=-0.028  Sum_probs=39.0

Q ss_pred             ccCCCceEeeccCCCccccccccCCCCC---C--CCCcccccc-ccCCCCCC
Q 013310          367 DEKTESVVVDVDRPLSSGSMNRLSSSQR---S--DSTTNGLIY-ASEDIEDG  412 (445)
Q Consensus       367 ~~~~~~~~v~~~~~i~~~~~~~~~~~~~---~--~~tl~g~~~-~~~~~e~g  412 (445)
                      ++..++|.++|.+++.++++.++...+.   .  +.|++||++ .++++|.-
T Consensus         3 ~~~dg~~~v~G~~~l~dl~~~l~~~~~~~~e~~~~~Tl~G~i~~~lg~iP~~   54 (84)
T d2plsa1           3 QREDGSWLLDGLIAVPELKDTLGLRAVPEEEKGVYHTLSGMIMWLLGRLPQT   54 (84)
T ss_dssp             ECTTSCEEEETTCBHHHHHHHHTCSCCTTTTSCSCCBHHHHHHHHHTSCCCT
T ss_pred             EecCCeEEEEccCCHHHHHHHHCCCCCcccccccccCHHHHHHHHhCccCCC
Confidence            3467899999999999999999987642   2  789999999 99999764

>d2nqwa1 d.145.1.4 (A:4-90) Hypothetical protein PG0272 {Porphyromonas gingivalis [TaxId: 837]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Hypothetical protein PG0272
species: Porphyromonas gingivalis [TaxId: 837]

Probab=92.38  E-value=0.013  Score=43.92  Aligned_cols=46  Identities=13%  Similarity=0.026  Sum_probs=39.3

Q ss_pred             ccCCCceEeeccCCCccccccccCCCC------CCCCCcccccc-ccCCCCCC
Q 013310          367 DEKTESVVVDVDRPLSSGSMNRLSSSQ------RSDSTTNGLIY-ASEDIEDG  412 (445)
Q Consensus       367 ~~~~~~~~v~~~~~i~~~~~~~~~~~~------~~~~tl~g~~~-~~~~~e~g  412 (445)
                      +...+.|.++|++++.|+++.++.+++      .++.|++||++ .++++|.-
T Consensus         5 ki~d~~~~v~G~~~l~dl~~~l~~~l~~~~~~~~~~~Ti~G~i~~~lg~iP~~   57 (87)
T d2nqwa1           5 VLGDGSYLFEGKTSLSDVRHYLDLPENAFGELGDEVDTLSGLFLEIKQELPHV   57 (87)
T ss_dssp             ECTTSCEEEETTCBHHHHHHHHTCCTTTTHHHHTTCSBHHHHHHHHHCSCCCT
T ss_pred             EECCCEEEEEEeCCHHHHHHHhCCCcccccCcccceeeHHHHHHHHhCccccC
Confidence            355688999999999999999998764      34899999999 99999763