Citrus Sinensis ID: 013312

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-----
Protein Sequence
MGMEKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMSHTPASSKSQNQCCLA
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHcHHHccccccHHccccccccccccccccccccHHHHHHHcccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccc
Coil and Loop (DISEMBL)
MGMEKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMmalcpgldecSLAIYLSGFQQAIIGLGTLVMMpvignlsdqygrkamltlpltlsiIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAAAYMRVFLkddvpndddddltrpiiteetegvnqnesnspvkipvckkipsIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSIswsawvpyATTAFSVLVVFAtpsfrsivskqvgpneqgkaqgcISGISSFanivsplifspltalflskgapfnfpgfsIMCIGLASMVAFIQSLmmshtpassksqnqccla
Flexible Loop (DISEMBL)
mgmekeikTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIiteetegvnqnesnspvkipvckKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMShtpassksqnqccla
Low Complexity Region (SEG)
MGMEKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMltlpltlsiiplailaYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAAAYMRVFLKddvpndddddLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMSHTPASSKSQNQCCLA
Disordered region (IsUnstruct)
*******KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAAAYMRVFLKDDV****************************VKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSFRSIVSKQVG****GKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLM*****************
Disordered Region (DISOPRED)
******I****HLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDD*************************KIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSFRSIVSKQ*****QGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQS*******************
Disordered Region (DISEMBL)
MGMEKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETE*********PVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMM****************
Disordered Region (DISPRO)
***EKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDD*T***ITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMSH**************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGMEKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMSHTPASSKSQNQCCLA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	445	2.2.26 [Sep-21-2011]
P70187	490	Hippocampus abundant tran	yes	no	0.761	0.691	0.235	2e-17
Q96MC6	490	Hippocampus abundant tran	yes	no	0.761	0.691	0.235	2e-17
Q5SR56	506	Hippocampus abundant tran	no	no	0.712	0.626	0.241	7e-16
Q8CIA9	507	Hippocampus abundant tran	no	no	0.710	0.623	0.231	2e-15
A4IF94	502	Hippocampus abundant tran	no	no	0.712	0.631	0.244	2e-15
B2RYH9	507	Hippocampus abundant tran	no	no	0.728	0.639	0.233	4e-14
P02982	399	Tetracycline resistance p	yes	no	0.660	0.736	0.224	1e-13
Q07282	405	Tetracycline resistance p	yes	no	0.667	0.733	0.219	1e-10
P02981	396	Tetracycline resistance p	yes	no	0.669	0.752	0.210	2e-10
P51563	393	Tetracycline resistance p	yes	no	0.676	0.765	0.230	2e-09

>sp|P70187|HIAT1_MOUSE Hippocampus abundant transcript 1 protein OS=Mus musculus GN=Hiat1 PE=2 SV=3

 Score = 90.9 bits (224), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 91/386 (23%), Positives = 163/386 (42%), Gaps = 47/386 (12%)

Query: 13  LFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIG 72
           +F+  F WG  T     A T V +    P          ++G  Q + GL + +  P+IG
Sbjct: 44  IFLEFFAWGLLT-----APTLVVLHETFP-----KHTFLMNGLIQGVKGLLSFLSAPLIG 93

Query: 73  NLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAY 132
            LSD +GRK+ L L +  +  P+ ++  + S  +++A  ++  + A+        +  AY
Sbjct: 94  ALSDVWGRKSFLLLTVFFTCAPIPLM--KISPWWYFAVISVSGVFAVTFS-----VVFAY 146

Query: 133 VADNISERQRASAFGILLGVLSASFVC----GTLAARFLSTTSAFQAATIVSMLAAAYMR 188
           VAD   E +R+ A+G++    +AS V     G    R    +     AT +++L   ++ 
Sbjct: 147 VADITQEHERSMAYGLVSATFAASLVTSPAIGAYLGRVYGDSLVVVLATAIALLDICFIL 206

Query: 189 VFLKDDVPND-DDDDLTRPIITEETEGVNQNESNSPVKIPVCKKI--PSIRDLICLLRSS 245
           V + + +P          PI  E+ +                KK+   SI  LIC     
Sbjct: 207 VAVPESLPEKMRPASWGAPISWEQAD-----------PFASLKKVGQDSIVLLIC----- 250

Query: 246 VTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPL 305
                  +  F S L E G  +SF  +L+    F+    A  + + G+   I+Q + + L
Sbjct: 251 -------ITVFLSYLPEAGQYSSFFLYLRQIMKFSPESVAAFIAVLGILSIIAQTIVLSL 303

Query: 306 LAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSFRSIVSKQVG 365
           L   +G    + LGL    + +         W+ +A  A + +     P+  ++VS+   
Sbjct: 304 LMRSIGNKNTILLGLGFQILQLAWYGFGSEPWMMWAAGAVAAMSSITFPAVSALVSRTAD 363

Query: 366 PNEQGKAQGCISGISSFANIVSPLIF 391
            ++QG  QG I+GI    N + P ++
Sbjct: 364 ADQQGVVQGMITGIRGLCNGLGPALY 389

Mus musculus (taxid: 10090)

>sp|Q96MC6|HIAT1_HUMAN Hippocampus abundant transcript 1 protein OS=Homo sapiens GN=HIAT1 PE=2 SV=2

 Score = 90.5 bits (223), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 91/386 (23%), Positives = 163/386 (42%), Gaps = 47/386 (12%)

Query: 13  LFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIG 72
           +F+  F WG  T     A T V +    P          ++G  Q + GL + +  P+IG
Sbjct: 44  IFLEFFAWGLLT-----APTLVVLHETFP-----KHTFLMNGLIQGVKGLLSFLSAPLIG 93

Query: 73  NLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAY 132
            LSD +GRK+ L L +  +  P+ ++  + S  +++A  ++  + A+        +  AY
Sbjct: 94  ALSDVWGRKSFLLLTVFFTCAPIPLM--KISPWWYFAVISVSGVFAVTFS-----VVFAY 146

Query: 133 VADNISERQRASAFGILLGVLSASFVC----GTLAARFLSTTSAFQAATIVSMLAAAYMR 188
           VAD   E +R+ A+G++    +AS V     G    R    +     AT +++L   ++ 
Sbjct: 147 VADITQEHERSMAYGLVSATFAASLVTSPAIGAYLGRVYGDSLVVVLATAIALLDICFIL 206

Query: 189 VFLKDDVPND-DDDDLTRPIITEETEGVNQNESNSPVKIPVCKKI--PSIRDLICLLRSS 245
           V + + +P          PI  E+ +                KK+   SI  LIC     
Sbjct: 207 VAVPESLPEKMRPASWGAPISWEQAD-----------PFASLKKVGQDSIVLLIC----- 250

Query: 246 VTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPL 305
                  +  F S L E G  +SF  +L+    F+    A  + + G+   I+Q + + L
Sbjct: 251 -------ITVFLSYLPEAGQYSSFFLYLRQIMKFSPESVAAFIAVLGILSIIAQTIVLSL 303

Query: 306 LAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSFRSIVSKQVG 365
           L   +G    + LGL    + +         W+ +A  A + +     P+  ++VS+   
Sbjct: 304 LMRSIGNKNTILLGLGFQILQLAWYGFGSEPWMMWAAGAVAAMSSITFPAVSALVSRTAD 363

Query: 366 PNEQGKAQGCISGISSFANIVSPLIF 391
            ++QG  QG I+GI    N + P ++
Sbjct: 364 ADQQGVVQGMITGIRGLCNGLGPALY 389

Homo sapiens (taxid: 9606)

>sp|Q5SR56|HIAL1_HUMAN Hippocampus abundant transcript-like protein 1 OS=Homo sapiens GN=HIATL1 PE=2 SV=3

 Score = 85.5 bits (210), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 82/340 (24%), Positives = 150/340 (44%), Gaps = 23/340 (6%)

Query: 52  LSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYY 111
           ++G  Q + GL + +  P+IG LSD +GRK  L   +  +  P+ ++  R S  +++A  
Sbjct: 81  MNGLIQGVKGLLSFLSAPLIGALSDVWGRKPFLLGTVFFTCFPIPLM--RISPWWYFAMI 138

Query: 112 ALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTS 171
           ++  + ++        +  AYVAD   E +R++A+G +    +AS V       +LS + 
Sbjct: 139 SVSGVFSVTF-----SVIFAYVADVTQEHERSTAYGWVSATFAASLVSSPAIGAYLSASY 193

Query: 172 AFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKK 231
                 +V+ + A     F+   VP    + + RP+         Q +  + +K  V K 
Sbjct: 194 GDSLVVLVATVVALLDICFILVAVPESLPEKM-RPVSWGAQISWKQADPFASLK-KVGKD 251

Query: 232 IPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIA 291
             S   LIC            +  F S L E G  +SF  +L+    F   + A  + + 
Sbjct: 252 --STVLLIC------------ITVFLSYLPEAGQYSSFFLYLRQVIGFGSVKIAAFIAMV 297

Query: 292 GLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVF 351
           G+   ++Q  F+ +L   LG    + LGL    + +        AW+ +A    + +   
Sbjct: 298 GILSIVAQTAFLSILMRSLGNKNTVLLGLGFQMLQLAWYGFGSQAWMMWAAGTVAAMSSI 357

Query: 352 ATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIF 391
             P+  ++VS+    ++QG AQG I+GI    N + P ++
Sbjct: 358 TFPAISALVSRNAESDQQGVAQGIITGIRGLCNGLGPALY 397

Homo sapiens (taxid: 9606)

>sp|Q8CIA9|HIAL1_MOUSE Hippocampus abundant transcript-like protein 1 OS=Mus musculus GN=Hiatl1 PE=2 SV=3

 Score = 84.3 bits (207), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/341 (23%), Positives = 146/341 (42%), Gaps = 25/341 (7%)

Query: 52  LSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYY 111
           ++G  Q + GL + +  P+IG LSD +GRK  L   +  +  P+ ++         + Y+
Sbjct: 83  MNGLIQGVKGLLSFLSAPLIGALSDVWGRKPFLLGTVFFTCFPIPLMRINP-----WWYF 137

Query: 112 ALRTLTAMVCEGSIN-CLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTT 170
            + +++ +    S+   +  AYVAD   E +R++A+G +    +AS V       +LS  
Sbjct: 138 GMISVSGVF---SVTFSVIFAYVADFTQEHERSTAYGWVSATFAASLVSSPAIGTYLSAN 194

Query: 171 SAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCK 230
                  +V+ L A     F+   VP    + + RP          Q +  + +K  V K
Sbjct: 195 YGDSLVVLVATLVALLDICFILIAVPESLSEKI-RPASWGAQISWKQADPFASLK-KVGK 252

Query: 231 KIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLI 290
              S   LIC            +  F S L E G  +SF  +L+    F   +    + +
Sbjct: 253 D--STVLLIC------------ITVFLSYLPEAGQYSSFFLYLRQVIGFGSVKIVAFIAM 298

Query: 291 AGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVV 350
            G+   ++Q +F+  L   LG    + LGL    + +        AW+ +A    + +  
Sbjct: 299 VGILSIVAQTVFLSKLMRSLGNKNTVLLGLGFQMLQLAWYGFGSQAWMMWAAGTVAAMSS 358

Query: 351 FATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIF 391
              P+  +++S+    ++QG AQG ++GI    N + P ++
Sbjct: 359 ITFPAVSALISRNAESDQQGVAQGIVTGIRGLCNGLGPALY 399

Mus musculus (taxid: 10090)

>sp|A4IF94|HIAL1_BOVIN Hippocampus abundant transcript-like protein 1 OS=Bos taurus GN=HIATL1 PE=2 SV=1

 Score = 84.0 bits (206), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 83/340 (24%), Positives = 149/340 (43%), Gaps = 23/340 (6%)

Query: 52  LSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYY 111
           ++G  Q + GL + +  P+IG LSD +GRK  L   +  +  P+ ++  R S  +++A  
Sbjct: 78  MNGLIQGVKGLLSFLSAPLIGALSDVWGRKPFLLGTVFFTCFPIPLM--RISPWWYFAMI 135

Query: 112 ALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTS 171
           ++  + ++        +  AYVAD   E +R++A+G +    +AS V       +LS + 
Sbjct: 136 SISGVFSVTFS-----VIFAYVADVTQEHERSTAYGWVSATFAASLVSSPAIGAYLSASY 190

Query: 172 AFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKK 231
                 +V+ + A     F+   VP    + + RP+         Q +  + +K  V K 
Sbjct: 191 GDSLVVLVATVVALLDICFILLAVPESLPEKM-RPLSWGARISWKQADPFASLK-KVGKD 248

Query: 232 IPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIA 291
             S   LIC            +  F S L E G  +SF  +L+    F   + A  + + 
Sbjct: 249 --STILLIC------------ITVFLSYLPEAGQYSSFFLYLRQVIGFGSIKIAAFIAMV 294

Query: 292 GLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVF 351
           G+   ++Q +F+  L   LG    + LGL      +        AW+ +A    + +   
Sbjct: 295 GILSIVAQTVFLTSLMRSLGNKNTVLLGLGFQMFQLAWYGFGSQAWMMWAAGIVAAVSSI 354

Query: 352 ATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIF 391
             P+  ++VS+    N+QG AQG I+GI    N + P ++
Sbjct: 355 TFPAVSTLVSQNADSNQQGVAQGIITGIRGLCNGLGPALY 394

Bos taurus (taxid: 9913)

>sp|B2RYH9|HIAL1_RAT Hippocampus abundant transcript-like protein 1 OS=Rattus norvegicus GN=Hiatl1 PE=2 SV=1

 Score = 79.7 bits (195), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 81/347 (23%), Positives = 150/347 (43%), Gaps = 23/347 (6%)

Query: 52  LSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYY 111
           ++G  Q + GL + +  P+IG LSD +GRK  L   +  +  P+ ++  R S  +++   
Sbjct: 83  MNGLIQGVKGLLSFLSAPLIGALSDVWGRKPFLLGTVFFTCFPIPLM--RISPWWYFGMI 140

Query: 112 ALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTS 171
           ++  + ++        +  AYVAD   E +R++A+G +    +AS V       +LS+  
Sbjct: 141 SVSGVFSVTF-----SVIFAYVADFTQEHERSTAYGWVSATFAASLVSSPAIGTYLSSNY 195

Query: 172 AFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKK 231
                 +V+ + A     F+   VP    + + RP          Q +  + +K  V K 
Sbjct: 196 GDSLVVLVATVVALLDICFILVAVPESLPEKI-RPASWGAQISWKQADPFASLK-KVGKD 253

Query: 232 IPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIA 291
             S   LIC            +  F S L E G  +SF  +L+    F   +    + + 
Sbjct: 254 --STVLLIC------------ITVFLSYLPEAGQYSSFFLYLRQVIGFGSVKIVAFIAMV 299

Query: 292 GLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVF 351
           G+   ++Q +F+  L   LG    + LGL    + +        AW+ +A    + +   
Sbjct: 300 GILSILAQTVFLSKLMRSLGNKNTVLLGLGFQILQLAWYGFGAQAWMMWAAGTVAAMSSI 359

Query: 352 ATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALF 398
             P+  +++S+    ++QG AQG I+GI    N + P ++  +  LF
Sbjct: 360 TFPAVSALISRNAESDQQGVAQGIITGIRGLCNGLGPALYGFIFYLF 406

Rattus norvegicus (taxid: 10116)

>sp|P02982|TCR1_ECOLX Tetracycline resistance protein, class A OS=Escherichia coli GN=tetA PE=3 SV=2

 Score = 77.8 bits (190), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 75/334 (22%), Positives = 146/334 (43%), Gaps = 40/334 (11%)

Query: 69  PVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCL 128
           PV+G LSD++GR+ +L + L  + +  AI+A   +  F +  Y  R +  +   G+   +
Sbjct: 61  PVLGALSDRFGRRPVLLVSLAGAAVDYAIMA---TAPFLWVLYIGRIVAGIT--GATGAV 115

Query: 129 ALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAAAYMR 188
           A AY+AD     +RA  FG +        V G +    +   S        + L      
Sbjct: 116 AGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAAL------ 169

Query: 189 VFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTL 248
                    +  + LT   +  E+          P++      + S R         +T+
Sbjct: 170 ---------NGLNFLTGCFLLPES----HKGERRPLRREALNPLASFR-----WARGMTV 211

Query: 249 SQAAVVAFFSGLSEGGMQAS-FLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLA 307
             A +  FF     G + A+ ++ F + +FH++       +   G+  +++Q +    +A
Sbjct: 212 VAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVA 271

Query: 308 PILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFAT-----PSFRSIVSK 362
             LGE + L LG+ A      + + +   W+     AF ++V+ A+     P+ ++++S+
Sbjct: 272 ARLGERRALMLGMIADGTGYILLAFATRGWM-----AFPIMVLLASGGIGMPALQAMLSR 326

Query: 363 QVGPNEQGKAQGCISGISSFANIVSPLIFSPLTA 396
           QV    QG+ QG ++ ++S  +IV PL+F+ + A
Sbjct: 327 QVDEERQGQLQGSLAALTSLTSIVGPLLFTAIYA 360

Resistance to tetracycline by an active tetracycline efflux. This is an energy-dependent process that decreases the accumulation of the antibiotic in whole cells. This protein functions as a metal-tetracycline/H(+) antiporter.

Escherichia coli (taxid: 562)

>sp|Q07282|TCR5_ECOLX Tetracycline resistance protein, class E OS=Escherichia coli GN=tetA PE=3 SV=1

 Score = 68.6 bits (166), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 73/332 (21%), Positives = 148/332 (44%), Gaps = 35/332 (10%)

Query: 65  LVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGS 124
           ++  P++G  SD+ GR+ +L L L  + +  A++A   + S  +  Y  R +  +   G+
Sbjct: 55  VIFAPLLGRWSDRIGRRPVLLLSLLGATLDYALMA---TASVVWVLYLGRLIAGI--TGA 109

Query: 125 INCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF---LSTTSAFQAATIVSM 181
              +A + +AD   E  R   FG++        + G +   F   LS  + F  A  ++ 
Sbjct: 110 TGAVAASTIADVTPEESRTHWFGMMGACFGGGMIAGPVIGGFAGQLSVQAPFMFAAAING 169

Query: 182 LAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICL 241
           LA   + +F+  +  N +        +++E +    NE+ S           SIR++I  
Sbjct: 170 LAF-LVSLFILHETHNANQ-------VSDELKNETINETTS-----------SIREMISP 210

Query: 242 LRSSVTLSQAAVVAFFSGLSEGGMQAS-FLYFLKAQFHFNKNQFADLMLIAGLAGTISQL 300
           L          +V FF     G + A+ ++ F + +F ++       + + GL   + Q 
Sbjct: 211 L-------SGLLVVFFIIQLIGQIPATLWVLFGEERFAWDGVMVGVSLAVFGLTHALFQG 263

Query: 301 LFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSFRSIV 360
           L    +A  LGE K +++G+ A    +F+ ++   +W+ +             P+ + I+
Sbjct: 264 LAAGFIAKHLGERKAIAVGILADGCGLFLLAVITQSWMVWPVLLLLACGGITLPALQGII 323

Query: 361 SKQVGPNEQGKAQGCISGISSFANIVSPLIFS 392
           S +VG   QG+ QG ++ ++    ++ PL+F+
Sbjct: 324 SVRVGQVAQGQLQGVLTSLTHLTAVIGPLVFA 355

Resistance to tetracycline by an active tetracycline efflux. This is an energy-dependent process that decreases the accumulation of the antibiotic in whole cells. This protein functions as a metal-tetracycline/H(+) antiporter.

Escherichia coli (taxid: 562)

>sp|P02981|TCR3_ECOLX Tetracycline resistance protein, class C OS=Escherichia coli GN=tetA PE=1 SV=1

 Score = 67.4 bits (163), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 73/347 (21%), Positives = 148/347 (42%), Gaps = 49/347 (14%)

Query: 69  PVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCL 128
           PV+G LSD++GR+ +L   L  + I  AI+A   +    +  YA R +  +   G+   +
Sbjct: 61  PVLGALSDRFGRRPVLLASLLGATIDYAIMA---TTPVLWILYAGRIVAGI--TGATGAV 115

Query: 129 ALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTS---AFQAATIVSMLAAA 185
           A AY+AD      RA  FG++        V G +A   L   S    F AA +++ L   
Sbjct: 116 AGAYIADITDGEDRARHFGLMSACFGVGMVAGPVAGGLLGAISLHAPFLAAAVLNGLNLL 175

Query: 186 YMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSS 245
                +++                      +      P+ +     + S R         
Sbjct: 176 LGCFLMQE----------------------SHKGERRPMPLRAFNPVSSFR-----WARG 208

Query: 246 VTLSQAAVVAFFSGLSEGGMQAS-FLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMP 304
           +T+  A +  FF     G + A+ ++ F + +F ++       + + G+   ++Q     
Sbjct: 209 MTIVAALMTVFFIMQLVGQVPAALWVIFGEDRFRWSATMIGLSLAVFGILHALAQAFVTG 268

Query: 305 LLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFAT-----PSFRSI 359
                 GE + +  G+ A  +   + + +   W+     AF ++++ A+     P+ +++
Sbjct: 269 PATKRFGEKQAIIAGMAADALGYVLLAFATRGWM-----AFPIMILLASGGIGMPALQAM 323

Query: 360 VSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFN 406
           +S+QV  + QG+ QG ++ ++S  +I  PLI   +TA++ +  + +N
Sbjct: 324 LSRQVDDDHQGQLQGSLAALTSLTSITGPLI---VTAIYAASASTWN 367

Resistance to tetracycline by an active tetracycline efflux. This is an energy-dependent process that decreases the accumulation of the antibiotic in whole cells. This protein functions as a metal-tetracycline/H(+) antiporter.

Escherichia coli (taxid: 562)

>sp|P51563|TCR7_VIBAN Tetracycline resistance protein, class G OS=Vibrio anguillarum GN=tetA PE=3 SV=1

 Score = 64.7 bits (156), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 81/352 (23%), Positives = 144/352 (40%), Gaps = 51/352 (14%)

Query: 65  LVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGS 124
           +V  P++G LSD YGR+ +L   L  + +   I+A   S    +  Y  R ++ +   G+
Sbjct: 55  VVFAPMLGQLSDSYGRRPVLLASLAGAAVDYTIMA---SAPVLWVLYIGRLVSGV--TGA 109

Query: 125 INCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSA---FQAATIVSM 181
              +A + +AD+  E  RA  FG +     A  + G      L   SA   F AA +++ 
Sbjct: 110 TGAVAASTIADSTGEGSRARWFGYMGACYGAGMIAGPALGGMLGGISAHAPFIAAALLNG 169

Query: 182 LAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICL 241
            A     +FLK+               T  + G     +  PV+I         +  + L
Sbjct: 170 FAFLLACIFLKE---------------THHSHG----GTGKPVRI---------KPFVLL 201

Query: 242 LRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGT--ISQ 299
                     A+ A F  +   G   + L+ +  +  F  N     + +A    T  I Q
Sbjct: 202 RLDDALRGLGALFAVFFIIQLIGQVPAALWVIYGEDRFQWNTATVGLSLAAFGATHAIFQ 261

Query: 300 LLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFAT-----P 354
                 L+  LGE + L  G+ A      + + +   W+      F +L++ A      P
Sbjct: 262 AFVTGPLSSRLGERRTLLFGMAADGTGFVLLAFATQGWM-----VFPILLLLAAGGVGMP 316

Query: 355 SFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFN 406
           + ++++S  V  N+QG  QG ++ +++ ++I  PL F   TAL+ +    +N
Sbjct: 317 ALQAMLSNNVSSNKQGALQGTLTSLTNLSSIAGPLGF---TALYSATAGAWN 365

Resistance to tetracycline by an active tetracycline efflux. This is an energy-dependent process that decreases the accumulation of the antibiotic in whole cells. This protein functions as a metal-tetracycline/H(+) antiporter.

Vibrio anguillarum (taxid: 55601)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	445
225428113	439	PREDICTED: hippocampus abundant transcri	0.957	0.970	0.703	1e-167
224105113	442	predicted protein [Populus trichocarpa]	0.961	0.968	0.663	1e-164
224083179	447	predicted protein [Populus trichocarpa]	0.957	0.953	0.642	1e-162
255539072	442	tetracycline transporter, putative [Rici	0.973	0.979	0.649	1e-158
118486381	450	unknown [Populus trichocarpa]	0.959	0.948	0.635	1e-157
225459764	442	PREDICTED: hippocampus abundant transcri	0.979	0.986	0.637	1e-157
356517952	432	PREDICTED: hippocampus abundant transcri	0.959	0.988	0.624	1e-156
356509042	432	PREDICTED: hippocampus abundant transcri	0.959	0.988	0.622	1e-156
357467111	454	Hippocampus abundant transcript-like pro	0.966	0.947	0.580	1e-152
356574133	443	PREDICTED: hippocampus abundant transcri	0.964	0.968	0.623	1e-151

>gi|225428113|ref|XP_002280708.1| PREDICTED: hippocampus abundant transcript 1 protein [Vitis vinifera] gi|297744560|emb|CBI37822.3| unnamed protein product [Vitis vinifera]

 Score =  593 bits (1530), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 303/431 (70%), Positives = 347/431 (80%), Gaps = 5/431 (1%)

Query: 3   MEKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGL 62
           MEK +  L+HLFVTV L  F+  +V+PAITDVTM ALCPG DECSLAIYLSGFQQAIIGL
Sbjct: 1   MEK-LAGLTHLFVTVLLGSFSAFIVIPAITDVTMSALCPGKDECSLAIYLSGFQQAIIGL 59

Query: 63  GTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCE 122
           GT+VM PVIGNLSD+YGRKA+LT+P+ LSIIPLAILAY R+ + FYAY+ +RTLTAMV E
Sbjct: 60  GTVVMTPVIGNLSDEYGRKALLTIPMALSIIPLAILAYSRTTTSFYAYFVIRTLTAMVGE 119

Query: 123 GSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSML 182
           GSINCLALAYVADNISE QRASAFG+L GV SA+FVCGTLAARFLST S FQ AT+VSM+
Sbjct: 120 GSINCLALAYVADNISEGQRASAFGVLSGVASAAFVCGTLAARFLSTASTFQVATLVSMI 179

Query: 183 AAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLL 242
           A  YMRVFLK+  P  D        + ++  G++ ++ NS  KI   KKIPS+ DLI LL
Sbjct: 180 ATVYMRVFLKETFPKGDSSQ----ALLKKEPGMSPDDGNSSEKIQTFKKIPSVGDLISLL 235

Query: 243 RSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLF 302
           +     SQAAVV FF+GL+EGG+QAS LYFLKA+FHFNKNQFAD+MLI G+ GTISQLLF
Sbjct: 236 KCRAAFSQAAVVVFFNGLAEGGLQASLLYFLKARFHFNKNQFADIMLIVGVMGTISQLLF 295

Query: 303 MPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSFRSIVSK 362
           MPLLAP + E KLLS+GLF  C N+F+ SI+WS WVPYA  A +   VFA P  RSI SK
Sbjct: 296 MPLLAPRVSEEKLLSIGLFMGCTNIFLNSIAWSFWVPYAIAALAAFAVFANPCVRSIASK 355

Query: 363 QVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVA 422
           QVGPNEQGKAQGCISGISS A I+SPLIFSPLTALFLS+GAPF FPGFSIMCIG ASM+A
Sbjct: 356 QVGPNEQGKAQGCISGISSSAQIISPLIFSPLTALFLSQGAPFYFPGFSIMCIGFASMIA 415

Query: 423 FIQSLMMSHTP 433
           FIQS M+   P
Sbjct: 416 FIQSTMIRAVP 426

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105113|ref|XP_002313691.1| predicted protein [Populus trichocarpa] gi|222850099|gb|EEE87646.1| predicted protein [Populus trichocarpa]

 Score =  583 bits (1503), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 286/431 (66%), Positives = 348/431 (80%), Gaps = 3/431 (0%)

Query: 3   MEKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGL 62
           MEK    L HLFVTVFL  F ++MV+PA+TDVTM+A+CPG DECSLAIYL+GFQQA IG+
Sbjct: 1   MEK-FTELIHLFVTVFLSTFGSLMVLPAVTDVTMVAVCPGQDECSLAIYLTGFQQASIGM 59

Query: 63  GTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCE 122
           GT+VM+P+IGNLSDQYGRKA+LTLP+TLSIIPL ILAY R+  FFYAYYALRTLTAM+CE
Sbjct: 60  GTVVMLPLIGNLSDQYGRKALLTLPMTLSIIPLVILAYSRTTGFFYAYYALRTLTAMICE 119

Query: 123 GSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSML 182
           GSI+CLALAYVADN+ ERQR S FGIL G+ +A+ VCGTLAARFLST   FQ A ++SML
Sbjct: 120 GSIDCLALAYVADNVLERQRTSVFGILSGITTAALVCGTLAARFLSTALTFQVAALLSML 179

Query: 183 AAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLL 242
           AA YMR+FL++ +P  ++  LT+PI+    +   Q++ + P K  V KKIPSI+ +I LL
Sbjct: 180 AAVYMRIFLEESLPQSEN--LTQPILKSGQDDHCQDDGDLPRKPMVSKKIPSIQAIISLL 237

Query: 243 RSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLF 302
           +SSVT SQAA+VAFF  LS GG+QAS +Y+LKA+FHF+KNQ+ADLML+ G++G  SQLLF
Sbjct: 238 KSSVTFSQAAIVAFFHSLSYGGLQASIMYYLKARFHFSKNQYADLMLLVGVSGMASQLLF 297

Query: 303 MPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSFRSIVSK 362
           MPLLAP++ E KLL++GL     N  + S++ SAWVPYATT FSV  VF  P  RSIVSK
Sbjct: 298 MPLLAPLVAEEKLLAIGLLGGIANALLYSVACSAWVPYATTIFSVFAVFIPPCLRSIVSK 357

Query: 363 QVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVA 422
           Q+GPNEQGKAQGCISGI S ANI+SPLI+SPLTALFLS+ APFNFPGF  +CIG A M+A
Sbjct: 358 QIGPNEQGKAQGCISGIISLANIISPLIYSPLTALFLSEDAPFNFPGFIFVCIGFAIMIA 417

Query: 423 FIQSLMMSHTP 433
           F QSL++   P
Sbjct: 418 FFQSLLIRAAP 428

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224083179|ref|XP_002306959.1| predicted protein [Populus trichocarpa] gi|222856408|gb|EEE93955.1| predicted protein [Populus trichocarpa]

 Score =  576 bits (1485), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 279/434 (64%), Positives = 351/434 (80%), Gaps = 8/434 (1%)

Query: 5   KEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGT 64
           K +  LSHLF+T+FL  F+ +MV+PAITDVTM ALCPG DECSLAIYL+GFQQAIIGLGT
Sbjct: 2   KTLSGLSHLFITIFLHNFSAVMVIPAITDVTMSALCPGRDECSLAIYLTGFQQAIIGLGT 61

Query: 65  LVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGS 124
           LVMMP+IGN+SD+YGRKA+LT+PL+L I+P AILAY R+ +FFYAYY ++TL AMVCEGS
Sbjct: 62  LVMMPLIGNMSDKYGRKALLTVPLSLVIVPSAILAYSRTRNFFYAYYVVKTLIAMVCEGS 121

Query: 125 INCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAA 184
           + CLALAYVADN+ E +RASAFGIL G+ S++FVCG L+ RFLST S FQ +  V++ + 
Sbjct: 122 VPCLALAYVADNVPEGRRASAFGILSGIASSAFVCGNLSTRFLSTASTFQVSASVAIASL 181

Query: 185 AYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIP-----VCKKIPSIRDLI 239
            YMR FL+D +    D+ LT PI+T   +   + +  +  +IP     + K  PS+ D++
Sbjct: 182 VYMRFFLQDSI---IDEQLTAPILTSNGKPKGKGKDYATNEIPSKNVQIFKSAPSLEDML 238

Query: 240 CLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQ 299
           CLL+SSVTLSQAAVVAFF  L+E G+ AS LY+LKA+FHFNK+QFADLM+I G+AGT+SQ
Sbjct: 239 CLLKSSVTLSQAAVVAFFYSLAEVGLHASLLYYLKARFHFNKDQFADLMVITGIAGTLSQ 298

Query: 300 LLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSFRSI 359
           L+ MP+LAP LGEA+LL++GLF  C+++F+ SI+W+ WVPY    FSVL+VF+ P  RSI
Sbjct: 299 LVLMPILAPALGEARLLAVGLFFTCVHVFLYSIAWTFWVPYVAAMFSVLIVFSQPCMRSI 358

Query: 360 VSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLAS 419
           VSKQVG  EQGKAQGCISGISSFAN++SPL+FSPLTALFLS+ APF+FPGFSIMC+G AS
Sbjct: 359 VSKQVGSCEQGKAQGCISGISSFANVISPLLFSPLTALFLSERAPFHFPGFSIMCVGFAS 418

Query: 420 MVAFIQSLMMSHTP 433
           M+AFIQSLM+   P
Sbjct: 419 MIAFIQSLMIRIAP 432

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539072|ref|XP_002510601.1| tetracycline transporter, putative [Ricinus communis] gi|223551302|gb|EEF52788.1| tetracycline transporter, putative [Ricinus communis]

 Score =  563 bits (1451), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 284/437 (64%), Positives = 352/437 (80%), Gaps = 4/437 (0%)

Query: 3   MEKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGL 62
           MEK +  LSHLF+T+FL  F+T MV+PAITDVTM ALCPG DECSLAIYL+GFQQAIIGL
Sbjct: 1   MEK-LSGLSHLFMTIFLHNFSTFMVIPAITDVTMSALCPGRDECSLAIYLTGFQQAIIGL 59

Query: 63  GTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCE 122
           GTLVMMP++GNLSD+YGRKA+LT+P++L++IPLA LAY R+  FFYAYY ++TLTAMVCE
Sbjct: 60  GTLVMMPLVGNLSDKYGRKALLTIPMSLTVIPLATLAYSRTTYFFYAYYVMKTLTAMVCE 119

Query: 123 GSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSML 182
           GS++CLALAYVADN+ E +RASAFGIL G+ S++FVCGTL+ RFLST S FQ +  ++++
Sbjct: 120 GSVHCLALAYVADNVPEARRASAFGILSGIGSSAFVCGTLSTRFLSTASTFQVSASMAVV 179

Query: 183 AAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLL 242
           A  YM+VFL+D +    D +LT PII+     V     NS     V + +PS+ D+ICLL
Sbjct: 180 AIVYMKVFLQDSIV---DKNLTTPIISNGKGKVYVQIENSSENEQVFRTMPSLEDMICLL 236

Query: 243 RSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLF 302
           +SSVT +QAA+VAFF  LSE G+ AS +Y+LKA+FHFNKNQFADLM+I+G+AGTISQLL 
Sbjct: 237 KSSVTFTQAAIVAFFINLSEVGLHASLMYYLKARFHFNKNQFADLMVISGIAGTISQLLL 296

Query: 303 MPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSFRSIVSK 362
           MPLLAP LGEA+LLS+GLF  CI+MF+ SI+WS WVPYA    S+L VF+ P  R+IVSK
Sbjct: 297 MPLLAPALGEARLLSVGLFFTCIHMFLYSIAWSFWVPYAAALLSILFVFSQPCLRTIVSK 356

Query: 363 QVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVA 422
           QVG  EQGKAQG +SG+ S AN+VSPL+FSPLTALFLS+ APF+FPGFSIMC+G ASM+A
Sbjct: 357 QVGACEQGKAQGFVSGLGSLANVVSPLVFSPLTALFLSERAPFHFPGFSIMCVGFASMIA 416

Query: 423 FIQSLMMSHTPASSKSQ 439
            IQS+MM   P  S  +
Sbjct: 417 LIQSMMMRVAPPISNER 433

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118486381|gb|ABK95031.1| unknown [Populus trichocarpa]

 Score =  562 bits (1449), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 279/439 (63%), Positives = 350/439 (79%), Gaps = 12/439 (2%)

Query: 3   MEKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGL 62
           MEK +  LSHLF+T+FL  F+T MV+PAITDVTM ALCPG DECSLAIYL+GFQQAIIGL
Sbjct: 1   MEK-LSGLSHLFMTIFLHNFSTFMVIPAITDVTMSALCPGRDECSLAIYLTGFQQAIIGL 59

Query: 63  GTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCE 122
           GTLV MP+IGN+SD+YGRKA+LT+P++L I+P AILAY R+ +FFYAYY +RTL AMVCE
Sbjct: 60  GTLVTMPLIGNMSDKYGRKALLTVPMSLIIVPSAILAYSRTRNFFYAYYVVRTLMAMVCE 119

Query: 123 GSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSML 182
           GS+ CLALAYVADN+ E +RAS FGIL G+ S++FVCG L+ RFLST+S FQ + +V++ 
Sbjct: 120 GSVQCLALAYVADNVPESRRASTFGILSGIASSAFVCGNLSTRFLSTSSTFQVSALVAIA 179

Query: 183 AAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQN-------ESNSPVK-IPVCKKIPS 234
           A  YMR FL++ +    D+ L+ PI+T +  G  +            P K + V K  PS
Sbjct: 180 ALVYMRFFLQESI---IDEQLSTPILTYKGNGKGKGKANAACFAHEIPSKNVQVFKSAPS 236

Query: 235 IRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLA 294
           + D++CLL+SSVTLSQAAVVAFF  L+E G+ AS +Y+LKAQFHF+K+QFA LM+I+G+A
Sbjct: 237 LEDMLCLLKSSVTLSQAAVVAFFYSLAEVGLHASLMYYLKAQFHFSKDQFAVLMVISGIA 296

Query: 295 GTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATP 354
           GT+SQL+ MPLL P LGEA+LL++GLF  C+++F+ SI+W+ WVPY  + FS+L VF+ P
Sbjct: 297 GTVSQLVIMPLLTPALGEARLLAVGLFFTCVHVFLYSIAWTFWVPYVASMFSLLFVFSQP 356

Query: 355 SFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMC 414
             RSIVSKQVG  EQGKAQGCISGISSFAN++SPL+FSPLTALFLS+ APF FPGFSIMC
Sbjct: 357 CMRSIVSKQVGSCEQGKAQGCISGISSFANVISPLVFSPLTALFLSERAPFPFPGFSIMC 416

Query: 415 IGLASMVAFIQSLMMSHTP 433
           +G ASM+AFIQSLMM   P
Sbjct: 417 VGFASMIAFIQSLMMRTAP 435

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459764|ref|XP_002284761.1| PREDICTED: hippocampus abundant transcript 1 protein [Vitis vinifera] gi|302141709|emb|CBI18912.3| unnamed protein product [Vitis vinifera]

 Score =  560 bits (1442), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 281/441 (63%), Positives = 349/441 (79%), Gaps = 5/441 (1%)

Query: 3   MEKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGL 62
           MEK +  L HLF+TVFL+ FAT MV+PAITDVTM ALCPG DECS+AIYL+GFQQ IIGL
Sbjct: 1   MEK-LSGLRHLFMTVFLFNFATFMVIPAITDVTMAALCPGRDECSIAIYLTGFQQVIIGL 59

Query: 63  GTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCE 122
           GTLVMMP++GNLSD YGRKA+LT+P+ L+IIPLAILA+ RS +FFYAY+ L+TLT+MVCE
Sbjct: 60  GTLVMMPLVGNLSDMYGRKALLTIPMCLTIIPLAILAWSRSRNFFYAYFVLKTLTSMVCE 119

Query: 123 GSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSML 182
           GS++CL LAYVADNI E +RASAFG+L GV S++FVCGTL+ARFL T+S FQ A  V+ +
Sbjct: 120 GSVHCLTLAYVADNIPEIRRASAFGVLSGVGSSAFVCGTLSARFLKTSSTFQVAASVAAV 179

Query: 183 AAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLL 242
           AA YM++FL D V  D   D     I E+   V   +  S    PV K +PS+ D++ LL
Sbjct: 180 AAVYMKLFLPDSVIKDGVLDRA---ILEQKPCVIHLDGESAQDSPVFKSMPSLDDMLSLL 236

Query: 243 RSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLF 302
           ++S T ++AA+VAFFS L + G+  S +Y+LKA+FHFNK+QFADLM+I+G+AGTISQL+ 
Sbjct: 237 QTSSTFTKAAIVAFFSNLGDVGLHTSLMYYLKARFHFNKHQFADLMMISGIAGTISQLVL 296

Query: 303 MPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSFRSIVSK 362
           MP+LAP +GE KLL++GL  +C +MF+ SI+WS WVPYA   FS+L+VFA P  RSI SK
Sbjct: 297 MPILAPTIGEEKLLAIGLLFSCSHMFLYSIAWSFWVPYAAAMFSILIVFAPPCIRSIASK 356

Query: 363 QVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVA 422
           QVGP+EQGK QGCISGISSFA++VSPL F+PLTALFLS GAPFNFPGFSIMCIG ASM+A
Sbjct: 357 QVGPSEQGKVQGCISGISSFAHLVSPLAFTPLTALFLSDGAPFNFPGFSIMCIGFASMIA 416

Query: 423 FIQSLMMSHTPA-SSKSQNQC 442
           F+QSL +   P  S+K    C
Sbjct: 417 FLQSLTIRAAPPISNKKVGNC 437

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517952|ref|XP_003527649.1| PREDICTED: hippocampus abundant transcript-like protein 1-like [Glycine max]

 Score =  557 bits (1435), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 268/429 (62%), Positives = 341/429 (79%), Gaps = 2/429 (0%)

Query: 5   KEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGT 64
            ++  LSHLF+ VFL  F+  MVVPAITDVTM ALCPG DECSLAIY++GFQQA+IGLGT
Sbjct: 2   DKLYGLSHLFMAVFLHNFSMFMVVPAITDVTMAALCPGQDECSLAIYITGFQQAMIGLGT 61

Query: 65  LVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGS 124
           LVMMP++GNLSD+YGRKA+LT+P+ L+IIP+ ILAY R+  FFY YY  + L +M+CEGS
Sbjct: 62  LVMMPLLGNLSDKYGRKAILTVPMILTIIPVGILAYSRTKKFFYVYYVFKILISMICEGS 121

Query: 125 INCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAA 184
           + CL LAYVADNI E  R++AFGIL G+ SA+FVCGTL+ARFLST   FQ +T+++++ A
Sbjct: 122 VPCLGLAYVADNIPESGRSTAFGILSGIASAAFVCGTLSARFLSTALTFQVSTLIAVIGA 181

Query: 185 AYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRS 244
            YM+ FL+D     DD  L  PII++E   +++       K  + K + SI DL   L S
Sbjct: 182 LYMQFFLRDSA--IDDKHLYTPIISQENPIISKVNGKLESKKHLFKALRSIEDLTSFLNS 239

Query: 245 SVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMP 304
           S+T++QAA+VAFF+ L++ G+  S LYFLKAQFHF+KNQFADLM+I+G+AGT+SQLL MP
Sbjct: 240 SLTITQAAIVAFFNSLADVGLHGSLLYFLKAQFHFDKNQFADLMVISGIAGTVSQLLLMP 299

Query: 305 LLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSFRSIVSKQV 364
           +LAPILGEA+LLS+GLF  CI+MF+ SI+WS+ VPYA+  FS+L VF+ P  RSIVSKQ 
Sbjct: 300 ILAPILGEARLLSVGLFFHCIHMFLYSIAWSSLVPYASAMFSILFVFSHPCIRSIVSKQA 359

Query: 365 GPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFI 424
           GP+EQGKAQGCISGI S A+IVSPL+FSPLTALFLS+ APF+FPGFSIMCIG ASM++ +
Sbjct: 360 GPHEQGKAQGCISGICSIAHIVSPLVFSPLTALFLSERAPFDFPGFSIMCIGFASMISLV 419

Query: 425 QSLMMSHTP 433
           QS+M+   P
Sbjct: 420 QSMMLRVVP 428

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509042|ref|XP_003523261.1| PREDICTED: hippocampus abundant transcript-like protein 1-like [Glycine max]

 Score =  556 bits (1432), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 267/429 (62%), Positives = 343/429 (79%), Gaps = 2/429 (0%)

Query: 5   KEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGT 64
            ++  LSHLF+TVFL  F+  MVVPAITDVTM ALCPG DECSLAIY++GFQQA+IGLGT
Sbjct: 2   DKLYGLSHLFMTVFLHNFSMFMVVPAITDVTMAALCPGQDECSLAIYITGFQQAMIGLGT 61

Query: 65  LVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGS 124
           LVMMP++GNLSD+YGRKA+LTLP+ L+IIP+ ILAY R+  FFY YY  + L +MVCEGS
Sbjct: 62  LVMMPLLGNLSDKYGRKAILTLPMILTIIPVGILAYSRTKKFFYVYYVFKILISMVCEGS 121

Query: 125 INCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAA 184
           + CLALAYVADN+ E  R++ FGIL G+ SA+FVC TL+ARFLS+   FQ +T+++++ A
Sbjct: 122 VPCLALAYVADNVPESGRSTVFGILSGIGSAAFVCATLSARFLSSALTFQVSTLIAVIGA 181

Query: 185 AYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRS 244
            YM+ FL+D V   DD  L  PII++    +++   N   K  + K + SI+DL   L S
Sbjct: 182 LYMQFFLRDSV--IDDKHLYTPIISQGNPIISKVNGNLESKKHLLKALRSIKDLTSFLNS 239

Query: 245 SVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMP 304
           S+T++QAA+VAFF+ L++ G+  S LYFLKAQFHF+KNQFADLM+I+G+AGT+SQLL MP
Sbjct: 240 SLTINQAAIVAFFNSLADVGLHGSLLYFLKAQFHFDKNQFADLMVISGIAGTVSQLLLMP 299

Query: 305 LLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSFRSIVSKQV 364
           +LAPILGE +LLS+GLF  C++MF+ S++WS+ VPYA+  FS+L VF+ P  RSIVSK+ 
Sbjct: 300 ILAPILGETRLLSVGLFFHCVHMFLYSMAWSSLVPYASAMFSILYVFSHPCIRSIVSKEA 359

Query: 365 GPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFI 424
           GP+EQGKAQGCISGI S A+IVSPL+FSPLTALFLS+ APF+FPGFSIMCIG ASM++F+
Sbjct: 360 GPHEQGKAQGCISGICSIAHIVSPLVFSPLTALFLSEKAPFDFPGFSIMCIGFASMISFV 419

Query: 425 QSLMMSHTP 433
           QSLM+   P
Sbjct: 420 QSLMLRVAP 428

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357467111|ref|XP_003603840.1| Hippocampus abundant transcript-like protein [Medicago truncatula] gi|355492888|gb|AES74091.1| Hippocampus abundant transcript-like protein [Medicago truncatula]

 Score =  543 bits (1398), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 263/453 (58%), Positives = 341/453 (75%), Gaps = 23/453 (5%)

Query: 3   MEK-EIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAI-- 59
           MEK  +  LSHLF+TVFL   +T MV PAITDVTM ALCPG DECS+AIYL+GFQQA+  
Sbjct: 1   MEKLNMYGLSHLFMTVFLHNLSTFMVQPAITDVTMAALCPGQDECSIAIYLTGFQQAVRY 60

Query: 60  ------------------IGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYR 101
                             IG+GTLVMMP++G+LSD+YGRKA+LTLP+TL IIPL ILAY 
Sbjct: 61  IVSPIYLNILHSFSKLTMIGMGTLVMMPILGDLSDKYGRKAILTLPMTLMIIPLGILAYS 120

Query: 102 RSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGT 161
           R+ +FFY YY  + +  M+C+G + CLALAYVADN+ E +R+SAFG+L G+ S++FVCGT
Sbjct: 121 RTKTFFYVYYVFKIIINMICDGCVPCLALAYVADNVPEGRRSSAFGVLSGIGSSAFVCGT 180

Query: 162 LAARFLSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESN 221
           +AARFLS    FQ +T V++L A YM++FL+D V   D++ L  PII++    + +    
Sbjct: 181 VAARFLSAAQTFQVSTFVAVLGAVYMQIFLRDSVA--DENQLYTPIISQGKPPIAKINGK 238

Query: 222 SPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNK 281
           S   +P+ K + S+RD+   L SS  ++QA++VAFFS L++ G+  S +Y+LKA+FHF+K
Sbjct: 239 SKANMPLLKALSSLRDITSFLNSSKIITQASIVAFFSNLADVGLHGSMMYYLKARFHFDK 298

Query: 282 NQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYA 341
           N FADLM+I+G+AGT+SQL  MP+ AP LGEA+LLS+GLF  C++MFI SI+WS+WVPYA
Sbjct: 299 NHFADLMIISGIAGTVSQLFLMPIFAPTLGEARLLSIGLFFHCVHMFIYSIAWSSWVPYA 358

Query: 342 TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSK 401
              FS+L VF+ P  RSIVSKQV P EQG+AQGCISGI S A+IVSPL FSPLTALFLS+
Sbjct: 359 AAMFSILFVFSQPCIRSIVSKQVDPREQGRAQGCISGICSIAHIVSPLAFSPLTALFLSE 418

Query: 402 GAPFNFPGFSIMCIGLASMVAFIQSLMMSHTPA 434
            APFNFPGFSIMCIG+ASMV+F+QS+M+   P+
Sbjct: 419 KAPFNFPGFSIMCIGIASMVSFVQSMMLRVVPS 451

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356574133|ref|XP_003555206.1| PREDICTED: hippocampus abundant transcript 1 protein-like [Glycine max]

 Score =  542 bits (1396), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 272/436 (62%), Positives = 337/436 (77%), Gaps = 7/436 (1%)

Query: 10  LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMP 69
           L HLFVT+F+ GF  ++V+PAITDVTM ALCPG D+CSLAIYLSGFQQA+ G+G++VM P
Sbjct: 7   LGHLFVTMFVSGFGGVIVLPAITDVTMAALCPGQDQCSLAIYLSGFQQAMAGVGSVVMTP 66

Query: 70  VIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLA 129
           +IGNLSD+YGRKA+LTLPLT+S+IP  ILAY R   FFYAYY ++TL AM  EGS +CLA
Sbjct: 67  LIGNLSDRYGRKALLTLPLTVSVIPQVILAYSRDTQFFYAYYVVKTLAAMAGEGSFHCLA 126

Query: 130 LAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAAAYMRV 189
           LAYVAD + + +R SAFGIL GV SASFV GTLAARFLST   FQ A+++SM+A  YMR+
Sbjct: 127 LAYVADKVPDGKRTSAFGILAGVGSASFVGGTLAARFLSTALTFQVASVLSMVALVYMRI 186

Query: 190 FLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLS 249
           FLKD VP      L +P++ E  E  ++++S SP      KK+PS+ DLICLLR S T S
Sbjct: 187 FLKDSVPGGA---LRQPLLKEVEEPCDEDDS-SPRATGTFKKLPSLGDLICLLRCSPTFS 242

Query: 250 QAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPI 309
           QAA+V+FF+ L++GG+ A  LY+LKA+F FNKNQFADL++I G+  T++QL FMP+L P+
Sbjct: 243 QAAMVSFFNSLADGGLMAVLLYYLKARFQFNKNQFADLLMITGIGATLAQLFFMPILVPV 302

Query: 310 LGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQ 369
           +GE KLLS GL  +CIN+F+ SI+W+AWVPYA    SV  VF  PS  SI SKQVGP EQ
Sbjct: 303 IGEEKLLSTGLLISCINVFVYSIAWTAWVPYALAGCSVFAVFVRPSLCSIASKQVGPTEQ 362

Query: 370 GKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMM 429
           G  QGC+S ISSFANI++PLIFSPLTALFLS+ APF FPGFS+MC+GLA MVAF QSL++
Sbjct: 363 GMVQGCLSAISSFANIIAPLIFSPLTALFLSEEAPFYFPGFSLMCLGLALMVAFFQSLII 422

Query: 430 SHTP--ASSK-SQNQC 442
              P  A  K S N+C
Sbjct: 423 RAVPPIAGGKISSNRC 438

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	445
TAIR|locus:2039450	456	AT2G16990 "AT2G16990" [Arabido	0.986	0.962	0.497	3e-108
TAIR|locus:2039440	461	AT2G16980 [Arabidopsis thalian	0.955	0.921	0.471	3.9e-99
TAIR|locus:2039430	446	MEE15 "maternal effect embryo	0.941	0.939	0.436	6.3e-92
TAIR|locus:2157592	282	AT5G42210 "AT5G42210" [Arabido	0.570	0.900	0.511	1.8e-62
UNIPROTKB|Q5SR56	506	HIATL1 "Hippocampus abundant t	0.725	0.638	0.229	6.6e-17
UNIPROTKB|A4IF94	502	HIATL1 "Hippocampus abundant t	0.725	0.643	0.232	1.4e-16
MGI|MGI:1913881	507	Hiatl1 "hippocampus abundant t	0.566	0.497	0.220	6.2e-13
UNIPROTKB|Q5ZJK7	492	HCN2 "Uncharacterized protein"	0.566	0.512	0.238	4.7e-12
TIGR_CMR|BA_0835	400	BA_0835 "multidrug resistance	0.368	0.41	0.236	5.1e-12
UNIPROTKB|I3LSQ8	496	HIATL1 "Uncharacterized protei	0.341	0.306	0.236	8.2e-12

TAIR|locus:2039450 AT2G16990 "AT2G16990" [Arabidopsis thaliana (taxid:3702)]

 Score = 1070 (381.7 bits), Expect = 3.0e-108, P = 3.0e-108
 Identities = 224/450 (49%), Positives = 288/450 (64%)

Query:     3 MEKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDE-CSLAIYLSGFQQAIIG 61
             ME  I  L H+  TVFL  FA  MVVP ITDVT+ A+C G D+ CSLA+YL+GFQQ  IG
Sbjct:     1 MEDGIGGLRHMLATVFLSAFAGFMVVPVITDVTVAAVCSGPDDSCSLAVYLTGFQQVAIG 60

Query:    62 LGTLVMMPVIGNLSDQYGRKAMXXXXXXXXXXXXXXXXYRRSISFFYAYYALRTLTAMVC 121
             +GT++MMPVIGNLSD+YG K +                YRR I FFY +Y  + LT+MVC
Sbjct:    61 MGTMIMMPVIGNLSDRYGIKTILTLPMCLSIVPPVILGYRRDIKFFYVFYISKILTSMVC 120

Query:   122 EGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSM 181
             EG+++CLA AYVA NI    R SAFGIL G+ + + + GTL ARFL     FQ + I   
Sbjct:   121 EGTVDCLAYAYVAVNIHGSTRISAFGILAGIKTIAGLFGTLVARFLPIALTFQVSAISFF 180

Query:   182 LAAAYMRVFLKXXXXXXXXXXLTRPIITEET-EGVNQNE------SNSPVKIPVC-KKIP 233
             +   YMRVFLK          L      +E  + +N         ++ P+K  V  KK  
Sbjct:   181 VGLVYMRVFLKEKLNDDEDDDLHHGTYHQEDHDSINTTMLAEPILNDRPIKTQVFHKKYS 240

Query:   234 SIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGL 293
             S++D+I L+++S    QA VV FFS  S+ GM+++FLYFLKA+F F+K QFADL+L+  +
Sbjct:   241 SLKDMISLMKTSTIFFQALVVTFFSSFSDSGMESAFLYFLKARFGFDKKQFADLLLLITI 300

Query:   294 AGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFAT 353
              G+ISQL  +P  A  +GE KLLS GLF   INM I SISW+ WVPY TT F    +F  
Sbjct:   301 VGSISQLFVLPRFASAIGECKLLSTGLFMEFINMAIVSISWAPWVPYLTTVFVPGALFVM 360

Query:   354 PSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIM 413
             PS   I S+QVGP EQGK QGCISG+ SF  +V+P +FSPLTALFLSK APF FPGFS++
Sbjct:   361 PSVCGIASRQVGPGEQGKVQGCISGVRSFGKVVAPFVFSPLTALFLSKNAPFYFPGFSLL 420

Query:   414 CIGLASMVAFIQSLMMSH--TPASSKSQNQ 441
             CI L+S++ F QSL++    TP  +K+ N+
Sbjct:   421 CISLSSLIGFFQSLLIKDVPTPPLNKAINK 450

GO:0008493 "tetracycline transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2039440 AT2G16980 [Arabidopsis thaliana (taxid:3702)]

 Score = 984 (351.4 bits), Expect = 3.9e-99, P = 3.9e-99
 Identities = 206/437 (47%), Positives = 272/437 (62%)

Query:    10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDE-CSLAIYLSGFQQAIIGLGTLVMM 68
             L HL VTVFL G A  ++ P +TDVT+ A+C GLD+ CSLA+YL+G QQ  +G+GT+VMM
Sbjct:     9 LRHLLVTVFLSGLAEYLIRPVMTDVTVAAVCSGLDDSCSLAVYLTGVQQVTVGMGTMVMM 68

Query:    69 PVIGNLSDQYGRKAMXXXXXXXXXXXXXXXXYRRSISFFYAYYALRTLTAMVCEGSINCL 128
             PVIGNLSD+YG KAM                YRR  +FFYA+Y ++TL  MVC+G+I+CL
Sbjct:    69 PVIGNLSDRYGIKAMLTLPMCLSVLPPAILGYRRDTNFFYAFYVIKTLFDMVCQGTIDCL 128

Query:   129 ALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAAAYMR 188
             A AYVA N+   +R S FGIL GV S S VC +L+ARFLS  S FQ A I   +   YMR
Sbjct:   129 ANAYVAKNVHGTKRISMFGILAGVSSISGVCASLSARFLSIASTFQVAAISLFIGLVYMR 188

Query:   189 VFLKXXXXXXXXXXLTRPIITEETEGVNQNES----------NSPVKIPVCK-KIPSIRD 237
             VFLK                    + V+              ++P K  V   K  S +D
Sbjct:   189 VFLKERLQDADDDDEADSGGCRSHQEVHNGGDLKMLTEPILRDAPTKTHVFNSKYSSWKD 248

Query:   238 LICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTI 297
             ++ L+ +S  L QA VV FF+  SE G  ++ +YFLKA+F FNKN FA+L L+  + G+I
Sbjct:   249 MVSLINNSTILIQALVVTFFATFSESGRGSALMYFLKARFGFNKNDFAELFLLVTIIGSI 308

Query:   298 SQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSFR 357
             SQL  +P L+  +GE K+LS GL     N    S++WS WVPYA T      +F  PS  
Sbjct:   309 SQLFILPTLSSTIGERKVLSTGLLMEFFNATCLSVAWSPWVPYAMTMLVPGAMFVMPSVC 368

Query:   358 SIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGL 417
              I S+QVG +EQGK QGCISG+ +FA +V+P ++SPLTALFLS+ APF FPGFSI+CI +
Sbjct:   369 GIASRQVGSSEQGKVQGCISGVRAFAQVVAPFVYSPLTALFLSENAPFYFPGFSILCIAI 428

Query:   418 ASMVAFIQSLMMSHTPA 434
             + M+ F+QSL++   P+
Sbjct:   429 SLMIGFLQSLLIKDHPS 445

GO:0005215 "transporter activity" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0005886 "plasma membrane" evidence=IEA

GO:0008493 "tetracycline transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2039430 MEE15 "maternal effect embryo arrest 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 916 (327.5 bits), Expect = 6.3e-92, P = 6.3e-92
 Identities = 197/451 (43%), Positives = 267/451 (59%)

Query:     4 EKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDE-CSLAIYLSGFQQAIIGL 62
             E  +  L HL  TVFL GF+  +V P +TDVT+ A+C GL+E CSLA+YL+G +Q  +GL
Sbjct:     3 EYRLGELRHLLTTVFLSGFSEFLVKPVMTDVTVAAVCSGLNETCSLAVYLTGVEQVTVGL 62

Query:    63 GTLVMMPVIGNLSDQYGRKAMXXXXXXXXXXXXXXXXYRRSISFFYAYYALRTLTAMVCE 122
             GT+VMMPVIGNLSD+YG K +                YRR  +FFYA+Y  + L  M   
Sbjct:    63 GTMVMMPVIGNLSDRYGIKTLLTLPMCLSILPPAILAYRRDTNFFYAFYITKILFDM--- 119

Query:   123 GSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSML 182
                        A N+  R+R S FG+L GV S S VC T +AR L   S FQ A I    
Sbjct:   120 -----------AKNVCGRKRISMFGVLAGVRSISGVCATFSARLLPIASIFQVAAISFFF 168

Query:   183 AAAYMRVFLKXXXXXXXXXXLTRPIITEETEGVNQNES------------NSPVKIPVC- 229
                YMRVFLK                 + T G N ++             ++P KI +  
Sbjct:   169 GLVYMRVFLKERLHDDDEDDCDED---DNTSGRNHHDGGDLTMLAEPILRDAPTKIHIVL 225

Query:   230 -KKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLM 288
               K  S++D++ L+++S  L Q  VV FF+  ++ GMQ++FLYFLKA+F FNKN FA+L+
Sbjct:   226 NTKYSSLKDMVSLIKNSTILVQTLVVTFFATFAQSGMQSAFLYFLKARFGFNKNDFAELI 285

Query:   289 LIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVL 348
             L+  + G+ISQL  +P L   +GE ++LS GL    +N    S+SWSAWVPYATT    +
Sbjct:   286 LLVTIIGSISQLFILPKLVSAIGERRVLSTGLLMDSVNAACLSVSWSAWVPYATTVLVPV 345

Query:   349 VVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFP 408
              +F  PS   I S+QVGP EQGK QGCISG+ SF+ +V+P I+SPLTALFLS+ APF FP
Sbjct:   346 TMFVMPSVCGIASRQVGPGEQGKVQGCISGVKSFSGVVAPFIYSPLTALFLSEKAPFYFP 405

Query:   409 GFSIMCIGLASMVAFIQSLMMSHTPASSKSQ 439
             GFS++C+  + M+ F  SL++   P+ S ++
Sbjct:   406 GFSLLCVTFSLMIGFFLSLLIRDVPSPSMNK 436

GO:0005215 "transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0008493 "tetracycline transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

TAIR|locus:2157592 AT5G42210 "AT5G42210" [Arabidopsis thaliana (taxid:3702)]

 Score = 638 (229.6 bits), Expect = 1.8e-62, P = 1.8e-62
 Identities = 132/258 (51%), Positives = 173/258 (67%)

Query:   179 VSMLAAAYMRVFLKXXXXXXXXXXLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDL 238
             + +L+  YMR+FL           L  PI+  E       E     +  + + I  + ++
Sbjct:    23 MGILSTLYMRLFLPDSIRDNS---LGAPIVINEKLSSPLLEDCPGHRNRIFRAIRLVHEM 79

Query:   239 ICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTIS 298
               L+RSSV L Q A+V+FFS L+E G+ AS +Y+LKA+FHFNK+QFADLM+I G +G+IS
Sbjct:    80 ASLMRSSVPLFQVAMVSFFSSLAEAGLHASSMYYLKAKFHFNKDQFADLMIIVGASGSIS 139

Query:   299 QLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSFRS 358
             QLLFMP+L P L E +LLS+GLF  C +MF+  ++WS+WVPY    F++  +F +   RS
Sbjct:   140 QLLFMPVLVPALKEERLLSIGLFFGCAHMFLLCVAWSSWVPYMAAIFALFSIFPSSCMRS 199

Query:   359 IVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLA 418
             IVSKQV   EQGKAQG IS I S AN++SPL FSPLT  FLS+ APFNFPGFSIMC G A
Sbjct:   200 IVSKQVASYEQGKAQGIISSICSLANVISPLAFSPLTDWFLSERAPFNFPGFSIMCAGFA 259

Query:   419 SMVAFIQSLMM-SHTPAS 435
               +AFIQSLM+ + TP S
Sbjct:   260 MTIAFIQSLMIRAATPIS 277

GO:0003674 "molecular_function" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|Q5SR56 HIATL1 "Hippocampus abundant transcript-like protein 1" [Homo sapiens (taxid:9606)]

 Score = 212 (79.7 bits), Expect = 6.6e-17, Sum P(2) = 6.6e-17
 Identities = 80/348 (22%), Positives = 146/348 (41%)

Query:    52 LSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMXXXXXXXXXXXXXXXXYRRSISFFYAYY 111
             ++G  Q + GL + +  P+IG LSD +GRK                      IS ++ Y+
Sbjct:    81 MNGLIQGVKGLLSFLSAPLIGALSDVWGRKPFLLGTVFFTCFPIPLMR----ISPWW-YF 135

Query:   112 ALRTLTAMVCEGSIN-CLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTT 170
             A+ +++ +    S+   +  AYVAD   E +R++A+G +    +AS V       +LS +
Sbjct:   136 AMISVSGVF---SVTFSVIFAYVADVTQEHERSTAYGWVSATFAASLVSSPAIGAYLSAS 192

Query:   171 SAFQAATIVSMLAAAYMRVFLKXXXXXXXXXXLTRPIITEETEGVNQNESNSPVKIPVCK 230
                    +V+ + A     F+           + RP+         Q +  + +K  V K
Sbjct:   193 YGDSLVVLVATVVALLDICFILVAVPESLPEKM-RPVSWGAQISWKQADPFASLK-KVGK 250

Query:   231 KIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLI 290
                 +  LIC            +  F S L E G  +SF  +L+    F   + A  + +
Sbjct:   251 DSTVL--LIC------------ITVFLSYLPEAGQYSSFFLYLRQVIGFGSVKIAAFIAM 296

Query:   291 AGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVV 350
              G+   ++Q  F+ +L   LG    + LGL    + +        AW+ +A    + +  
Sbjct:   297 VGILSIVAQTAFLSILMRSLGNKNTVLLGLGFQMLQLAWYGFGSQAWMMWAAGTVAAMSS 356

Query:   351 FATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALF 398
                P+  ++VS+    ++QG AQG I+GI    N + P ++  +  +F
Sbjct:   357 ITFPAISALVSRNAESDQQGVAQGIITGIRGLCNGLGPALYGFIFYMF 404

GO:0005215 "transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|A4IF94 HIATL1 "Hippocampus abundant transcript-like protein 1" [Bos taurus (taxid:9913)]

 Score = 210 (79.0 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
 Identities = 81/348 (23%), Positives = 145/348 (41%)

Query:    52 LSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMXXXXXXXXXXXXXXXXYRRSISFFYAYY 111
             ++G  Q + GL + +  P+IG LSD +GRK                      IS ++ Y+
Sbjct:    78 MNGLIQGVKGLLSFLSAPLIGALSDVWGRKPFLLGTVFFTCFPIPLMR----ISPWW-YF 132

Query:   112 ALRTLTAMVCEGSIN-CLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTT 170
             A+ +++ +    S+   +  AYVAD   E +R++A+G +    +AS V       +LS +
Sbjct:   133 AMISISGVF---SVTFSVIFAYVADVTQEHERSTAYGWVSATFAASLVSSPAIGAYLSAS 189

Query:   171 SAFQAATIVSMLAAAYMRVFLKXXXXXXXXXXLTRPIITEETEGVNQNESNSPVKIPVCK 230
                    +V+ + A     F+           + RP+         Q +  + +K  V K
Sbjct:   190 YGDSLVVLVATVVALLDICFILLAVPESLPEKM-RPLSWGARISWKQADPFASLK-KVGK 247

Query:   231 KIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLI 290
                 +  LIC            +  F S L E G  +SF  +L+    F   + A  + +
Sbjct:   248 DSTIL--LIC------------ITVFLSYLPEAGQYSSFFLYLRQVIGFGSIKIAAFIAM 293

Query:   291 AGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVV 350
              G+   ++Q +F+  L   LG    + LGL      +        AW+ +A    + +  
Sbjct:   294 VGILSIVAQTVFLTSLMRSLGNKNTVLLGLGFQMFQLAWYGFGSQAWMMWAAGIVAAVSS 353

Query:   351 FATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALF 398
                P+  ++VS+    N+QG AQG I+GI    N + P ++  +  +F
Sbjct:   354 ITFPAVSTLVSQNADSNQQGVAQGIITGIRGLCNGLGPALYGFIFYMF 401

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

MGI|MGI:1913881 Hiatl1 "hippocampus abundant transcript-like 1" [Mus musculus (taxid:10090)]

 Score = 176 (67.0 bits), Expect = 6.2e-13, Sum P(2) = 6.2e-13
 Identities = 59/268 (22%), Positives = 112/268 (41%)

Query:   131 AYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAAAYMRVF 190
             AYVAD   E +R++A+G +    +AS V       +LS         +V+ L A     F
Sbjct:   155 AYVADFTQEHERSTAYGWVSATFAASLVSSPAIGTYLSANYGDSLVVLVATLVALLDICF 214

Query:   191 LKXXXXXXXXXXLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQ 250
             +           + RP        ++  +++    +   KK+   +D      S+V L  
Sbjct:   215 ILIAVPESLSEKI-RP--ASWGAQISWKQADPFASL---KKVG--KD------STVLL-- 258

Query:   251 AAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPIL 310
               +  F S L E G  +SF  +L+    F   +    + + G+   ++Q +F+  L   L
Sbjct:   259 ICITVFLSYLPEAGQYSSFFLYLRQVIGFGSVKIVAFIAMVGILSIVAQTVFLSKLMRSL 318

Query:   311 GEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQG 370
             G    + LGL    + +        AW+ +A    + +     P+  +++S+    ++QG
Sbjct:   319 GNKNTVLLGLGFQMLQLAWYGFGSQAWMMWAAGTVAAMSSITFPAVSALISRNAESDQQG 378

Query:   371 KAQGCISGISSFANIVSPLIFSPLTALF 398
              AQG ++GI    N + P ++  +  +F
Sbjct:   379 VAQGIVTGIRGLCNGLGPALYGFIFYMF 406

GO:0005215 "transporter activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005886 "plasma membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|Q5ZJK7 HCN2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 191 (72.3 bits), Expect = 4.7e-12, P = 4.7e-12
 Identities = 64/268 (23%), Positives = 115/268 (42%)

Query:   131 AYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAAAYMRVF 190
             AYVAD   E +R++A+G++    +AS V       +LS   A+   T+V +LA+    V 
Sbjct:   145 AYVADITQEHERSTAYGLVSATFAASLVTSPAIGAYLS--QAY-GDTLVVVLASG---VA 198

Query:   191 LKXXXXXXXXXXLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQ 250
             L            + P   EE   V+     +P+         S+R +        T+  
Sbjct:   199 LLDIGFILLAVPESLP---EEMRPVSWG---APISWEQADPFASLRKV----GQDSTVLL 248

Query:   251 AAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPIL 310
               +  F S L E G  +SF  +L+    F+    A  + + G+   ++Q + + +L   +
Sbjct:   249 ICITVFLSYLPEAGQYSSFFLYLRQVIGFSSETVAAFIGVVGILSILAQTVVLGILMRSI 308

Query:   311 GEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQG 370
             G    + LGL    + +         W+ +A  A + +     P+  ++VS+   P++QG
Sbjct:   309 GNKNTILLGLGFQILQLAWYGFGSQPWMMWAAGAVAAMSSITFPAISAMVSRNADPDQQG 368

Query:   371 KAQGCISGISSFANIVSPLIFSPLTALF 398
               QG I+GI    N + P ++  +  LF
Sbjct:   369 VVQGMITGIRGLCNGLGPALYGFVFYLF 396

GO:0005215 "transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TIGR_CMR|BA_0835 BA_0835 "multidrug resistance protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 141 (54.7 bits), Expect = 5.1e-12, Sum P(2) = 5.1e-12
 Identities = 40/169 (23%), Positives = 71/169 (42%)

Query:   251 AAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPIL 310
             A ++ F         +  F  F   +F F     A ++ I+ + G + Q+     L  + 
Sbjct:   220 AFIIVFVLAFGLSAYETVFSLFSDHKFGFTPKDIAAIITISSIFGVVVQVFMFGKLVDMF 279

Query:   311 GEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVV-FATPSFRSIVSKQVGPNEQ 369
             GE  L+ + L    +  F+ ++ ++ W+    T F  L      P+  + +SK  G  EQ
Sbjct:   280 GEKVLIQICLIVGAVLAFVSTVVFNYWIVLLVTCFIFLAFDLLRPALTTFLSKAAG-KEQ 338

Query:   370 GKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLA 418
             G   G  S  +S  NI  P +   L  + +    P+ F G  ++ +GLA
Sbjct:   339 GFVAGMNSTYTSLGNIAGPAMGGILFDMNIHY--PYAFSGV-VLIVGLA 384

GO:0006855 "drug transmembrane transport" evidence=ISS

GO:0042493 "response to drug" evidence=ISS

UNIPROTKB|I3LSQ8 HIATL1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 154 (59.3 bits), Expect = 8.2e-12, Sum P(2) = 8.2e-12
 Identities = 36/152 (23%), Positives = 68/152 (44%)

Query:   247 TLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLL 306
             T+    +  F S L E G  +SF  +L+    F   +    + + G+   ++Q +F+ +L
Sbjct:   217 TVLLICITVFLSYLPEAGQYSSFFLYLRQVIGFGSVKITAFIAMVGILSIVAQTVFLSIL 276

Query:   307 APILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSFRSIVSKQVGP 366
                LG+   + LGL      +        AW+ +A    + +     P+  ++VS     
Sbjct:   277 MKSLGKKNTVLLGLGFQMFQLAWYGFGSQAWMMWAAGTVAAMSSITFPAVSALVSGNAES 336

Query:   367 NEQGKAQGCISGISSFANIVSPLIFSPLTALF 398
             ++QG AQG I+GI    N + P ++  +  +F
Sbjct:   337 DQQGVAQGIITGIRGLCNGLGPALYGFIFYMF 368

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00036173001	SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (439 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00033966001	SubName- Full=Chromosome undetermined scaffold_71, whole genome shotgun sequence; (470 aa)			•						0.483
	GSVIVG00023334001	SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (476 aa)			•						0.473
	GSVIVG00033971001	SubName- Full=Chromosome undetermined scaffold_71, whole genome shotgun sequence; (488 aa)			•						0.459

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	445
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	1e-12
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	5e-11
TIGR00880	141	TIGR00880, 2_A_01_02, Multidrug resistance protein	5e-04
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	0.002
COG2814	394	COG2814, AraJ, Arabinose efflux permease [Carbohyd	0.002

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 68.6 bits (168), Expect = 1e-12
 Identities = 80/383 (20%), Positives = 132/383 (34%), Gaps = 44/383 (11%)

Query: 13  LFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIG 72
           LF+  FL G    ++ PA+       L     E  L +           LG  +  P+ G
Sbjct: 1   LFLAAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLL-------TAFSLGYALAQPLAG 53

Query: 73  NLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAY 132
            LSD++GR+ +L + L L  + L +L +  S+        L      +  G++   A A 
Sbjct: 54  RLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVL----QGLGGGALFPAAAAL 109

Query: 133 VADNISERQRASAFGILLGVLSASFVCGTLAARFLST----TSAFQAATIVSMLAAAYMR 188
           +AD     +R  A G+L          G L    L++     +AF    I+++LAA    
Sbjct: 110 IADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVLAA 169

Query: 189 VFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTL 248
           + L    P              E++     E      +P  K +     L  LL      
Sbjct: 170 LLLPRPPP--------------ESKRPKPAEEAPAPLVPAWKLLLRDPVLWLLL------ 209

Query: 249 SQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAP 308
                 A            ++L   +     +      L+ +AGL G I +LL   L   
Sbjct: 210 ------ALLLFGFAFFALLTYLPLYQEVLGLSALLAGLLLGLAGLLGAIGRLLLGRLSDR 263

Query: 309 ILGEAKLLSLGLFAACINMFICSISW---SAWVPYATTAFSVLVVFATPSFRSIVSKQVG 365
           +    +LL   L      + +  +S    S W+  A            P+  ++VS    
Sbjct: 264 LGRRRRLLLALLLLILAALGLALLSLTESSLWLLVALLLLGFGAGLVFPALNALVSDLAP 323

Query: 366 PNEQGKAQGCISGISSFANIVSP 388
             E+G A G  +   S    + P
Sbjct: 324 KEERGTASGLYNTAGSLGGALGP 346

Length = 346

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 63.5 bits (155), Expect = 5e-11
 Identities = 70/413 (16%), Positives = 141/413 (34%), Gaps = 66/413 (15%)

Query: 13  LFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIG 72
           LF+  FL G    ++ PA+  +         ++  L+   +G   +   LG  +   + G
Sbjct: 4   LFLGFFLSGLDRGLLSPALPLL--------AEDLGLSASQAGLIVSAFSLGYALGSLLAG 55

Query: 73  NLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAY 132
            LSD++GR+ +L L L L  +   +LA+  S+        L      +  G++   A A 
Sbjct: 56  YLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFL----LGLGGGALYPAAAAL 111

Query: 133 VADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAAAYMRVFLK 192
           +A+    ++R  A G+         + G L    L+ +  ++   ++  +    +     
Sbjct: 112 IAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLL----- 166

Query: 193 DDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAA 252
                                                         + LL     L   A
Sbjct: 167 ---------------------------------------------ALLLLFLLRLLLLLA 181

Query: 253 VVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGE 312
           +  F       G+      +L+     +  +   L+ + GL G +  LL   L   +   
Sbjct: 182 LAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRR 241

Query: 313 AKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVV-FATPSFRSIVSKQVGPNEQGK 371
             LL +GL  A + + + +++ S  +           + FA P+  ++ S+   P  +G 
Sbjct: 242 RLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGT 301

Query: 372 AQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFI 424
           A G  +   S    + PL+   L       G    F   + + +  A ++  +
Sbjct: 302 ASGLFNTFGSLGGALGPLLAGLLLDTGGYGGV---FLILAALALLAALLLLLL 351

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein

 Score = 39.9 bits (94), Expect = 5e-04
 Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 4/118 (3%)

Query: 58  AIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLT 117
           A   LG L+  P+ G L+D++GRK +L + L + ++  A+ A   +I+       L+   
Sbjct: 5   AGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFG 64

Query: 118 AMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQA 175
           A     +      A +AD     +R  A G++   ++   + G      L+    ++A
Sbjct: 65  AAFALVAGA----ALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRA 118

Length = 141

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 31/174 (17%), Positives = 68/174 (39%), Gaps = 2/174 (1%)

Query: 252 AVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILG 311
            + AF +GL    +  +   +L      +  +   L+    L   ++Q L   L     G
Sbjct: 2   FLAAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSD-RFG 60

Query: 312 EAKLLSLGLFAACINMFICSISWSAWVPYATTAFS-VLVVFATPSFRSIVSKQVGPNEQG 370
             ++L +GL    + + +   + S W+         +      P+  ++++    P E+G
Sbjct: 61  RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEERG 120

Query: 371 KAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFI 424
           +A G +S        + PL+   L +LF  + A       +++   LA+++   
Sbjct: 121 RALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVLAALLLPR 174

Length = 346

>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]

 Score = 40.3 bits (95), Expect = 0.002
 Identities = 69/394 (17%), Positives = 125/394 (31%), Gaps = 57/394 (14%)

Query: 13  LFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIG 72
           L +  F  G    + V  +     +A   G+ E +    ++ +      LG  +  P++ 
Sbjct: 18  LALAAFAIGTTEFVPVGLLPP---IAADLGVSEGAAGQLITAY-----ALGVALGAPLLA 69

Query: 73  NLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAY 132
            L+ +  R+ +L   L L I+   + A   S   F      R L  +   G    +A A 
Sbjct: 70  LLTGRLERRRLLLGLLALFIVSNLLSALAPS---FAVLLLARALAGLAH-GVFWSIAAAL 125

Query: 133 VADNISERQRASAFGILLGVLSASFVCGTLAARFLSTT----SAFQAATIVSMLAAAYMR 188
            A  +   +R  A  ++   L+ + V G     FL       + F A  ++++LA   + 
Sbjct: 126 AARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLW 185

Query: 189 VFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRS-SVT 247
             L                               P           +R L+ LLR   V 
Sbjct: 186 KLL-------------------------------PPSEISGSLPGPLRTLLRLLRRPGVL 214

Query: 248 LSQAAVVAFFSGLSEGGMQASFLY---FLKAQFHFNKNQFADLMLIAGLAGTISQLLFMP 304
           L   A   F       G  A + Y   FL++   F+ +  + ++L  G+AG I  LL   
Sbjct: 215 LGLLATFLFM-----TGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGR 269

Query: 305 LLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSFRSIVSKQV 364
           L       A + +L L A  + + +     S  +  A                     ++
Sbjct: 270 LADRGPRRALIAALLLLALAL-LALTFTGASPALALALLFLWGFAFSPALQGLQTRLARL 328

Query: 365 GPNEQGKAQGCISGISSFANIVSPLIFSPLTALF 398
            P+    A        +    +   +   +    
Sbjct: 329 APDAADLAGSLNVAAFNLGIALGAALGGLVLDAL 362

Length = 394

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	445
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	100.0
PRK03545	390	putative arabinose transporter; Provisional	100.0
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	100.0
PRK11663	434	regulatory protein UhpC; Provisional	100.0
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	100.0
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	100.0
PRK09705	393	cynX putative cyanate transporter; Provisional	100.0
TIGR00900	365	2A0121 H+ Antiporter protein.	100.0
PRK11646	400	multidrug resistance protein MdtH; Provisional	100.0
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	100.0
PRK10642	490	proline/glycine betaine transporter; Provisional	100.0
PRK14995	495	methyl viologen resistance protein SmvA; Provision	100.0
PRK10489	417	enterobactin exporter EntS; Provisional	100.0
PRK03633	381	putative MFS family transporter protein; Provision	100.0
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	100.0
PRK10213	394	nepI ribonucleoside transporter; Reviewed	100.0
PRK05122	399	major facilitator superfamily transporter; Provisi	100.0
TIGR00893	399	2A0114 d-galactonate transporter.	100.0
PRK09952	438	shikimate transporter; Provisional	100.0
PRK09874	408	drug efflux system protein MdtG; Provisional	100.0
TIGR00891	405	2A0112 putative sialic acid transporter.	100.0
PRK10091	382	MFS transport protein AraJ; Provisional	100.0
PRK10406	432	alpha-ketoglutarate transporter; Provisional	100.0
PRK11195	393	lysophospholipid transporter LplT; Provisional	100.0
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	100.0
PRK12307	426	putative sialic acid transporter; Provisional	100.0
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	100.0
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	100.0
PRK10504	471	putative transporter; Provisional	100.0
PRK12382	392	putative transporter; Provisional	100.0
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	100.0
PRK10077	479	xylE D-xylose transporter XylE; Provisional	100.0
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	100.0
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	100.0
PRK10054	395	putative transporter; Provisional	100.0
PRK03699	394	putative transporter; Provisional	100.0
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	100.0
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	100.0
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	100.0
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	100.0
PRK15075	434	citrate-proton symporter; Provisional	100.0
TIGR00897	402	2A0118 polyol permease family. This family of prot	100.0
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	100.0
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	100.0
PRK15403	413	multidrug efflux system protein MdtM; Provisional	100.0
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	100.0
TIGR00895	398	2A0115 benzoate transport.	100.0
PRK10133	438	L-fucose transporter; Provisional	100.0
PRK11652	394	emrD multidrug resistance protein D; Provisional	100.0
PRK15011	393	sugar efflux transporter B; Provisional	100.0
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	100.0
PRK10473	392	multidrug efflux system protein MdtL; Provisional	100.0
TIGR00898	505	2A0119 cation transport protein.	100.0
PRK03893	496	putative sialic acid transporter; Provisional	100.0
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	100.0
PLN00028	476	nitrate transmembrane transporter; Provisional	100.0
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	100.0
PRK11043	401	putative transporter; Provisional	100.0
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	100.0
PRK09528	420	lacY galactoside permease; Reviewed	100.0
TIGR00892	455	2A0113 monocarboxylate transporter 1.	100.0
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	100.0
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	100.0
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	100.0
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	100.0
PRK11010	491	ampG muropeptide transporter; Validated	100.0
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	100.0
KOG0569	485	consensus Permease of the major facilitator superf	100.0
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	100.0
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	100.0
TIGR00896	355	CynX cyanate transporter. This family of proteins	100.0
PRK11902	402	ampG muropeptide transporter; Reviewed	100.0
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	100.0
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	100.0
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	100.0
KOG2615	451	consensus Permease of the major facilitator superf	100.0
KOG2532	466	consensus Permease of the major facilitator superf	99.98
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.97
TIGR00901	356	2A0125 AmpG-related permease.	99.97
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.97
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.97
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.97
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.97
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.97
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.96
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.96
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.96
KOG2533	495	consensus Permease of the major facilitator superf	99.96
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.96
KOG0254	513	consensus Predicted transporter (major facilitator	99.95
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.95
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.95
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.95
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.95
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.95
TIGR00805	633	oat sodium-independent organic anion transporter.	99.95
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.94
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.94
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.94
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.94
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.94
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.94
PRK09669	444	putative symporter YagG; Provisional	99.93
PRK10429	473	melibiose:sodium symporter; Provisional	99.93
PRK09848	448	glucuronide transporter; Provisional	99.93
PF13347	428	MFS_2: MFS/sugar transport protein	99.93
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.92
KOG2816	463	consensus Predicted transporter ADD1 (major facili	99.92
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.91
COG2211	467	MelB Na+/melibiose symporter and related transport	99.91
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.9
PRK11462	460	putative transporter; Provisional	99.9
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.89
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.89
PTZ00207	591	hypothetical protein; Provisional	99.89
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.88
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.77
KOG2563	480	consensus Permease of the major facilitator superf	99.76
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.73
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	99.68
PRK10054	395	putative transporter; Provisional	99.64
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.62
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.6
KOG3626	735	consensus Organic anion transporter [Secondary met	99.6
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.59
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.59
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.59
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	99.59
PRK11663	434	regulatory protein UhpC; Provisional	99.57
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.57
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.56
TIGR00900	365	2A0121 H+ Antiporter protein.	99.56
PRK03545	390	putative arabinose transporter; Provisional	99.55
PRK10642	490	proline/glycine betaine transporter; Provisional	99.55
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.55
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.55
PRK10489	417	enterobactin exporter EntS; Provisional	99.54
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.54
PRK05122	399	major facilitator superfamily transporter; Provisi	99.54
PRK10504	471	putative transporter; Provisional	99.53
PRK10091	382	MFS transport protein AraJ; Provisional	99.53
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.53
PRK12382	392	putative transporter; Provisional	99.53
PRK03633	381	putative MFS family transporter protein; Provision	99.52
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.52
PRK09874	408	drug efflux system protein MdtG; Provisional	99.51
PRK09528	420	lacY galactoside permease; Reviewed	99.51
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.51
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.51
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.51
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.51
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.5
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.49
PRK03699	394	putative transporter; Provisional	99.49
TIGR00891	405	2A0112 putative sialic acid transporter.	99.49
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.49
PRK11043	401	putative transporter; Provisional	99.49
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.49
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.48
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.48
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	99.47
TIGR00895	398	2A0115 benzoate transport.	99.46
PLN00028	476	nitrate transmembrane transporter; Provisional	99.46
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.46
TIGR00893	399	2A0114 d-galactonate transporter.	99.45
KOG3762	618	consensus Predicted transporter [General function	99.45
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.45
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.45
PRK15011	393	sugar efflux transporter B; Provisional	99.45
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.45
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.44
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.44
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.43
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.43
KOG0637	498	consensus Sucrose transporter and related proteins	99.42
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.41
PRK12307	426	putative sialic acid transporter; Provisional	99.41
PRK09705	393	cynX putative cyanate transporter; Provisional	99.41
PRK03893	496	putative sialic acid transporter; Provisional	99.4
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.4
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.39
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.39
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.39
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.38
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.38
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.36
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.35
PRK10133	438	L-fucose transporter; Provisional	99.34
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.34
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.33
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.32
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	99.31
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.29
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.27
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.27
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.26
PRK09952	438	shikimate transporter; Provisional	99.26
PRK11902	402	ampG muropeptide transporter; Reviewed	99.26
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.24
KOG3098	461	consensus Uncharacterized conserved protein [Funct	99.24
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.24
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.23
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.23
TIGR00805	633	oat sodium-independent organic anion transporter.	99.22
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.22
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.22
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.21
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.21
PRK11010	491	ampG muropeptide transporter; Validated	99.2
TIGR00901	356	2A0125 AmpG-related permease.	99.19
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.19
PTZ00207	591	hypothetical protein; Provisional	99.19
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.18
PRK15075	434	citrate-proton symporter; Provisional	99.18
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	99.15
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.15
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.14
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.14
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.13
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.12
TIGR00898	505	2A0119 cation transport protein.	99.12
KOG3810	433	consensus Micronutrient transporters (folate trans	99.11
KOG2615	451	consensus Permease of the major facilitator superf	99.11
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.07
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.07
KOG2532	466	consensus Permease of the major facilitator superf	99.01
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.01
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	98.99
PRK09848	448	glucuronide transporter; Provisional	98.98
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.95
PRK10429	473	melibiose:sodium symporter; Provisional	98.95
PRK09669	444	putative symporter YagG; Provisional	98.94
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	98.92
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.89
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	98.88
PF13347	428	MFS_2: MFS/sugar transport protein	98.85
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	98.83
KOG0569	485	consensus Permease of the major facilitator superf	98.83
PRK11462	460	putative transporter; Provisional	98.81
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.81
COG0477	338	ProP Permeases of the major facilitator superfamil	98.8
KOG0254	513	consensus Predicted transporter (major facilitator	98.79
KOG3762	618	consensus Predicted transporter [General function	98.73
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.73
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	98.73
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	98.68
COG2211	467	MelB Na+/melibiose symporter and related transport	98.68
KOG2533	495	consensus Permease of the major facilitator superf	98.67
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	98.67
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.67
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.64
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.6
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	98.59
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.46
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.45
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.44
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	98.43
KOG2325	488	consensus Predicted transporter/transmembrane prot	98.38
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.34
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	98.32
PF12832	77	MFS_1_like: MFS_1 like family	98.31
KOG2816	463	consensus Predicted transporter ADD1 (major facili	98.19
PF12832	77	MFS_1_like: MFS_1 like family	98.19
KOG2563	480	consensus Permease of the major facilitator superf	98.16
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.12
COG3202	509	ATP/ADP translocase [Energy production and convers	98.1
KOG3880	409	consensus Predicted small molecule transporter inv	98.08
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	98.01
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	97.97
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	97.96
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.93
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	97.83
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	97.71
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	97.63
COG0477	338	ProP Permeases of the major facilitator superfamil	97.58
KOG3626	735	consensus Organic anion transporter [Secondary met	97.56
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	97.54
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	97.41
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	97.2
PRK03612	521	spermidine synthase; Provisional	97.0
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	96.94
KOG3098	461	consensus Uncharacterized conserved protein [Funct	96.84
KOG0637	498	consensus Sucrose transporter and related proteins	96.78
KOG2601	503	consensus Iron transporter [Inorganic ion transpor	96.62
PRK03612	521	spermidine synthase; Provisional	96.5
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	96.31
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	96.22
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	95.67
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	95.46
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	94.99
KOG4830	412	consensus Predicted sugar transporter [Carbohydrat	94.84
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	93.76
KOG3097	390	consensus Predicted membrane protein [Function unk	93.61
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	92.43
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	92.14
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	91.63
PF07857	254	DUF1632: CEO family (DUF1632); InterPro: IPR012435	91.38
KOG2881	294	consensus Predicted membrane protein [Function unk	90.74
KOG3880	409	consensus Predicted small molecule transporter inv	85.64
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	84.79
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	83.13
COG3202	509	ATP/ADP translocase [Energy production and convers	82.99

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.1e-38  Score=285.52  Aligned_cols=372  Identities=16%  Similarity=0.188  Sum_probs=308.6

Q ss_pred             HhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHH
Q 013312            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (445)
Q Consensus         7 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~   86 (445)
                      +..++.+.++.|.......+..+.+|++.+        |+++|....|++.|+|.++..+++|+...+.||+.||++++.
T Consensus        12 ~~~l~aLa~~~F~igttEfv~~gLLp~iA~--------dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~   83 (394)
T COG2814          12 WLALLALALAAFAIGTTEFVPVGLLPPIAA--------DLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLG   83 (394)
T ss_pred             hHHHHHHHHHHHHHHhHHHHHHhchHHHHH--------HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHH
Confidence            445677788889999999999999999985        457888999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhh--
Q 013312           87 PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAA--  164 (445)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~--  164 (445)
                      .+.++.++++++++++|   |+.++++|++.|+ +.|.+++...++..|..|+++|++++++...+.+++.++|..++  
T Consensus        84 ~l~lFi~~n~l~alAp~---f~~Ll~aR~~~g~-a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~  159 (394)
T COG2814          84 LLALFIVSNLLSALAPS---FAVLLLARALAGL-AHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTF  159 (394)
T ss_pred             HHHHHHHHHHHHHHhcc---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHH
Confidence            99999999999999999   9999999999999 99999999999999999999999999999999988888876655  


Q ss_pred             --hhhchhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCccccchhhhcccccCCCCCCcccccccccchhHHHHHHh
Q 013312          165 --RFLSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLL  242 (445)
Q Consensus       165 --~~~~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (445)
                        +.+|||+.|++.+.++++..+..+..+|  |++.+++                             ...+.++.++. 
T Consensus       160 ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP--~~~~~~~-----------------------------~~~~~~~~~~~-  207 (394)
T COG2814         160 LGQLFGWRATFLAIAVLALLALLLLWKLLP--PSEISGS-----------------------------LPGPLRTLLRL-  207 (394)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHhCC--CccCCCC-----------------------------CCcchhHHHHH-
Confidence              4579999999999999999999999999  2111111                             01123343443 


Q ss_pred             hcchhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHH
Q 013312          243 RSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFA  322 (445)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  322 (445)
                      .++|.++...+..++...+.+..++|+.+++++..|+|+...++.+..++++.++++ .++|++.|| +.|+.+.....+
T Consensus       208 l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn-~~gGrl~dr-~~~~~l~~~~~l  285 (394)
T COG2814         208 LRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGN-LLGGRLADR-GPRRALIAALLL  285 (394)
T ss_pred             hcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHH-HHHhhhccc-cchhHHHHHHHH
Confidence            467778888888999999999999999999999999999999999999999999999 888999999 888888888777


Q ss_pred             HHHHHHHHHhcCC-chhHHH-HHHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013312          323 ACINMFICSISWS-AWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLS  400 (445)
Q Consensus       323 ~~~~~~~~~~~~~-~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~  400 (445)
                      .++..+.+.+..+ .+.... ..++++......+..+....+ .-+|.++.+.+++....++|..+|..++|.++|+.  
T Consensus       286 ~a~~~l~l~~~~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~--  362 (394)
T COG2814         286 LALALLALTFTGASPALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDAL--  362 (394)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--
Confidence            7777777666554 333333 344566666666666666676 33588999999999999999999999999999985  


Q ss_pred             CCCCcccchhHHHHHHHHHHHHHHHHHhccCCC
Q 013312          401 KGAPFNFPGFSIMCIGLASMVAFIQSLMMSHTP  433 (445)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (445)
                           ++.. ..+..+++.+++....+...+++
T Consensus       363 -----g~~~-~~~~~a~l~~~a~~~~~~~~~~~  389 (394)
T COG2814         363 -----GYAA-TGWVGAALLLLALLLALLSARKD  389 (394)
T ss_pred             -----chHH-HHHHHHHHHHHHHHHHHHHHhcc
Confidence                 3333 35666666677666665554443

>PRK03545 putative arabinose transporter; Provisional

Probab=100.00  E-value=1e-37  Score=293.50  Aligned_cols=367  Identities=14%  Similarity=0.134  Sum_probs=280.7

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHHH
Q 013312            9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL   88 (445)
Q Consensus         9 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~   88 (445)
                      .++.+.+..++.........+.+|.+.+        +++.+..+.|++.+.+.+++.+++++.|+++||+|||+++..+.
T Consensus        10 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~--------~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~   81 (390)
T PRK03545         10 RVVTLALAAFIFNTTEFVPVGLLSDIAQ--------SFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLF   81 (390)
T ss_pred             HHHHHHHHHHHHHhHHHHHHcchHHHHh--------HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHH
Confidence            3445555555544444555667788764        45777789999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhhhh--
Q 013312           89 TLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF--  166 (445)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~--  166 (445)
                      ++.+++++.+++++|   ++.+++.|+++|+ +.+...+...+++.|++|+|+|++++++.+...++|..+||.+++.  
T Consensus        82 ~~~~~~~~~~~~~~~---~~~l~~~r~~~G~-~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~  157 (390)
T PRK03545         82 VLFIASHVLSALAWN---FTVLLISRIGIAF-AHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIG  157 (390)
T ss_pred             HHHHHHHHHHHHhcc---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            999999999999999   9999999999999 7788889999999999999999999999999999999999988765  


Q ss_pred             --hchhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCccccchhhhcccccCCCCCCcccccccccchhHHHHHHhhc
Q 013312          167 --LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRS  244 (445)
Q Consensus       167 --~~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (445)
                        .+||+.|++.++++++..+.....+||+++++++                                 +.++. +...+
T Consensus       158 ~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~~---------------------------------~~~~~-~~~~~  203 (390)
T PRK03545        158 QYLGWRTTFLAIGGGALITLLLLIKLLPLLPSEHSG---------------------------------SLKSL-PLLFR  203 (390)
T ss_pred             HHhcHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcc---------------------------------hHHHH-HHHHh
Confidence              5999999999988777666655556654321100                                 11221 22445


Q ss_pred             chhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHH
Q 013312          245 SVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAAC  324 (445)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  324 (445)
                      +|.++......++..........+.+.|+++..|+|+.+.+......+++.+++. +..+++.||+++|+... +..+..
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~-~~~g~l~dr~~~~~~~~-~~~~~~  281 (390)
T PRK03545        204 RPALVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGS-VLFSRLGNRHPSGFLLI-AIALLL  281 (390)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHH-HHHHHHhhccchhHHHH-HHHHHH
Confidence            6666655555555555555566788888888789999999999999999999998 77799999999876544 444444


Q ss_pred             HHHH-HHHhcCCchhHHH-HHHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 013312          325 INMF-ICSISWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKG  402 (445)
Q Consensus       325 ~~~~-~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~  402 (445)
                      .+.. .....++.+..+. ..+.|++.....+.....+.+..| ++|++++|..+...++|..+||.+.|.++|+.    
T Consensus       282 ~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~----  356 (390)
T PRK03545        282 VCLLLLLPAANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHL----  356 (390)
T ss_pred             HHHHHHHHHhchHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----
Confidence            4433 3334444444443 466677776667777788888766 68899999999999999999999999999986    


Q ss_pred             CCcccchhHHHHHHHHHHHHHHHHHhccCC
Q 013312          403 APFNFPGFSIMCIGLASMVAFIQSLMMSHT  432 (445)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (445)
                         ++.. .+.+.+.+.+++++......++
T Consensus       357 ---g~~~-~~~~~~~~~~~~~~~~~~~~~~  382 (390)
T PRK03545        357 ---GLSS-IGYVGAALALAALVWSILIFRR  382 (390)
T ss_pred             ---ChhH-HHHHHHHHHHHHHHHHHHHccc
Confidence               3333 3566666667766666655543

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=100.00  E-value=2.2e-36  Score=286.51  Aligned_cols=377  Identities=15%  Similarity=0.118  Sum_probs=286.2

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHHH
Q 013312            9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL   88 (445)
Q Consensus         9 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~   88 (445)
                      .+...+...+++.++.....+..|.+.+|        ++.+..+.|++.+.+.++..+++++.|+++||+|||+++..+.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~   87 (406)
T PRK11551         16 TIGLCFLVALLEGLDLQSAGVAAPRMAQE--------FGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSV   87 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHH
Confidence            34455566777788888888888888654        4667788999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhhhh--
Q 013312           89 TLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF--  166 (445)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~--  166 (445)
                      ++..++.+++.++++   ++.+++.|++.|+ +.+...+...+++.|++|+++|++++++.+....+|..+++.++..  
T Consensus        88 ~~~~~~~~~~~~~~~---~~~~~~~~~l~G~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~  163 (406)
T PRK11551         88 ALFGLFSLATAQAWD---FPSLLVARLLTGV-GLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAA  163 (406)
T ss_pred             HHHHHHHHHHHHhcc---HHHHHHHHHHHHh-hHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            999999999999999   9999999999999 8888889999999999999999999999999999999999888754  


Q ss_pred             --hchhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCccccchhhhcccccCCCCCCcccccccccchhHHHHHHhhc
Q 013312          167 --LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRS  244 (445)
Q Consensus       167 --~~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (445)
                        .+||+.|++.+++.++..+.....+||++++.+++++.                        .++++..+..++. .+
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~-~~  218 (406)
T PRK11551        164 GDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAG------------------------KQRAPVLRALFGE-GR  218 (406)
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcc------------------------hhhhhhHHHHhhh-hh
Confidence              48999999888776666666666788865432221000                        0000001111111 11


Q ss_pred             chhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHH
Q 013312          245 SVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAAC  324 (445)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  324 (445)
                      ++..+......+...........+.|.|+++ .|+++.+.+.......++.+++. +..+++.||+++|+.+..+.....
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~-~~~g~l~dr~g~~~~~~~~~~~~~  296 (406)
T PRK11551        219 ATATLLLWISYFFTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGS-LLIGALMDRLRPRRVVLLIYAGIL  296 (406)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHH
Confidence            1222233333444444555667788999987 69999999999999999999988 888999999999998887777776


Q ss_pred             HHHHHHHhcCCchhHHH-HHHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 013312          325 INMFICSISWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGA  403 (445)
Q Consensus       325 ~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~  403 (445)
                      ++.+.+...++.+.... ..+.+++.....+...++..|.+|+++||++.|+.+....++..++|.+.|.+.++.     
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~-----  371 (406)
T PRK11551        297 ASLAALAAAPSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALG-----  371 (406)
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccC-----
Confidence            66666666665554444 355677777778888999999999999999999999999999999999999999864     


Q ss_pred             CcccchhHHHHHHHHHHHHHHHHHhccC
Q 013312          404 PFNFPGFSIMCIGLASMVAFIQSLMMSH  431 (445)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (445)
                        +.....+.....+.+++....+...+
T Consensus       372 --~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (406)
T PRK11551        372 --RSTVGVIGASIPVILVAALAALLLVS  397 (406)
T ss_pred             --CchHHHHHHHHHHHHHHHHHHHHHhc
Confidence              22223344444445555555444433

>PRK11663 regulatory protein UhpC; Provisional

Probab=100.00  E-value=3.7e-36  Score=286.27  Aligned_cols=392  Identities=12%  Similarity=0.085  Sum_probs=275.3

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHHHH
Q 013312           10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLT   89 (445)
Q Consensus        10 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~   89 (445)
                      ....++..+..+++.....+.+|.+.++        ++.+..+.|++.+.+.+++.+++++.|+++||+|||+++.++.+
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~   96 (434)
T PRK11663         25 LITMYLGYALFYFTRKSFNAAMPEMLAD--------LGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLI   96 (434)
T ss_pred             HHHHHHHHHHHHHhhhhHHHhhHHHHHh--------cCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHH
Confidence            3445556666666666777888888643        46777889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhhhh---
Q 013312           90 LSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF---  166 (445)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~---  166 (445)
                      +.+++.++++++++   ++.+++.|++.|+ +.|...+...+++.|++|+++|++++++.+...++|..++|.+++.   
T Consensus        97 ~~~~~~~~~~~~~~---~~~l~~~~~l~g~-~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~  172 (434)
T PRK11663         97 ATGIINILFGFSSS---LWAFALLWVLNAF-FQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIAL  172 (434)
T ss_pred             HHHHHHHHHHHHhH---HHHHHHHHHHHHH-HHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999   9999999999999 7787788999999999999999999999999999999999887765   


Q ss_pred             -hchhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCccccchhhhcccccCCCCCCcccccccccchhHHHHH-Hhhc
Q 013312          167 -LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLIC-LLRS  244 (445)
Q Consensus       167 -~~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  244 (445)
                       ++||+.|++.+++.++..+...+.+||+|++.....+.+.     +++   +++.++  +. .++..+.++.++ ...+
T Consensus       173 ~~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~-----~~~---~~~~~~--~~-~~~~~~~~~~~~~~~~~  241 (434)
T PRK11663        173 HYGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEW-----RHD---ALELAQ--QQ-EGAGLSRKEILTKYVLL  241 (434)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccc-----ccc---ccccch--hc-cccCCChhhhHHHHHhc
Confidence             4999999998877666655555677876543221110000     000   000000  00 000112233222 2456


Q ss_pred             chhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhh--cchhHH-HH---
Q 013312          245 SVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPIL--GEAKLL-SL---  318 (445)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~-~~---  318 (445)
                      ++.++...+..++..........++|.|+++.+|+++.+.+...+...++..++. +..|++.||+  ++|+.. ..   
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~-~~~g~l~dr~~~~~r~~~~~~~~~  320 (434)
T PRK11663        242 NPYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGA-LVAGWGSDKLFNGNRGPMNLIFAA  320 (434)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHH-HHHhhhHHHhccCCccHHHHHHHH
Confidence            6777776666666666677778899999987789999999999999999999998 8889999998  333322 21   


Q ss_pred             HHHHHHHHHHHHHhcCCchhHHH-HHHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013312          319 GLFAACINMFICSISWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTAL  397 (445)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~  397 (445)
                      +.....+...... ..+...... ....+++.............|..|+++||++.|+.+...++|..++|.+.|++.|+
T Consensus       321 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~  399 (434)
T PRK11663        321 GILLSVGSLWLMP-FASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEI  399 (434)
T ss_pred             HHHHHHHHHHHcc-cccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHh
Confidence            1111111111111 122222111 22223222222233445678889999999999999999999999999999999997


Q ss_pred             hhcCCCCcccchhHHHHHHHHHHHHHHHHHhccCCCC
Q 013312          398 FLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMSHTPA  434 (445)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (445)
                      .       ++.. .+...+++.+++.+..+...|+++
T Consensus       400 ~-------g~~~-~f~~~~~~~~~~~~~~~~~~~~~~  428 (434)
T PRK11663        400 W-------HWTG-FFVVISIAAGISALLLLPFLNAQA  428 (434)
T ss_pred             c-------ccHH-HHHHHHHHHHHHHHHHHHHHhhhc
Confidence            6       4333 355566666565555554444433

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=100.00  E-value=1.4e-36  Score=286.80  Aligned_cols=376  Identities=12%  Similarity=0.077  Sum_probs=273.5

Q ss_pred             HhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHH
Q 013312            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (445)
Q Consensus         7 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~   86 (445)
                      ++.+..+++..++.+++........|.+.        +|++.+..+.|++.+++.+++.+++++.|+++||+|||+++..
T Consensus         7 ~~~~~~~~~~~~~~~~d~~~~~~~~~~l~--------~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~   78 (412)
T TIGR02332         7 RRLIIFLFILFIFSFLDRINIGFAGLTMG--------KDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAG   78 (412)
T ss_pred             hHHHHHHHHHHHHHHhhhhhHHHHHHhhH--------hhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHH
Confidence            45666677777788888888888888664        4557778899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhhhh
Q 013312           87 PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF  166 (445)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~  166 (445)
                      +.++.+++.+++++++|   ++.+++.|+++|+ +.+...|...+++.|++|+++|++++++++...++|..+++.+++.
T Consensus        79 ~~~~~~~~~~~~~~~~~---~~~l~~~r~l~G~-~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~  154 (412)
T TIGR02332        79 IMVLWGIASTATMFATG---PESLYLLRILVGI-AEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGY  154 (412)
T ss_pred             HHHHHHHHHHHHHHhcC---HHHHHHHHHHHHH-HHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999   9999999999999 8888889999999999999999999999999999999999888764


Q ss_pred             ----------hchhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCc-CCccccchhhhcccccCCCCCCcccccccccchh
Q 013312          167 ----------LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDD-DLTRPIITEETEGVNQNESNSPVKIPVCKKIPSI  235 (445)
Q Consensus       167 ----------~~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (445)
                                .+||+.|++.+++.++..++.++++||+|++.+.. ++.++..++..+.+..+ ..++. +...+.....
T Consensus       155 l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~  232 (412)
T TIGR02332       155 ILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKEMIDNDQLT-LEQPE-GAFAHAAMPQ  232 (412)
T ss_pred             HHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCHHHHHHHHHHHHhcccc-ccccc-cccccccccH
Confidence                      38999999998887777666777889887543210 00000000000000000 00000 0000111111


Q ss_pred             HHHHHHhhcchhhHHHHHHHHHHHhhhhhhHHHHHHHHHhh-cCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchh
Q 013312          236 RDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQ-FHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAK  314 (445)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  314 (445)
                      ++.++.++ ++.++...+..++.....+.+.+++|.|+++. .|+++.+.+.+.....++..++. +..++++||+++|+
T Consensus       233 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~-l~~g~l~dr~~~r~  310 (412)
T TIGR02332       233 RSMLREIF-TPAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGM-IWWSRHSDRLKERK  310 (412)
T ss_pred             HHHHHHhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHH-HHHHHHhcccCccH
Confidence            22233343 35567667777777777888899999999872 46788888999999999999988 88899999998776


Q ss_pred             H-HHHHHHHHHHHHHHHHhcCCchhHHH-HHHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHH
Q 013312          315 L-LSLGLFAACINMFICSISWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFS  392 (445)
Q Consensus       315 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g  392 (445)
                      . .........++..+.....+...... ..+.+.+.....+.......|.+|+++|+++.|+.+...++|++++|.+.|
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g  390 (412)
T TIGR02332       311 HHTALPYLFAAAGWLLASATDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIG  390 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcc
Confidence            4 33344444444333222222222221 222233333333444455567889999999999999999999999999999


Q ss_pred             HHHHhh
Q 013312          393 PLTALF  398 (445)
Q Consensus       393 ~l~~~~  398 (445)
                      .+.|..
T Consensus       391 ~i~~~~  396 (412)
T TIGR02332       391 ILKDAT  396 (412)
T ss_pred             cccccC
Confidence            999876

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.2e-36  Score=268.41  Aligned_cols=378  Identities=14%  Similarity=0.110  Sum_probs=294.8

Q ss_pred             HhhhHHHHHHHHHHHHHH----HhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchh
Q 013312            7 IKTLSHLFVTVFLWGFAT----MMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKA   82 (445)
Q Consensus         7 ~~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~   82 (445)
                      +|..+.++++.++.+.++    .......|.+.+|        .+++..+.|++.+++.+.+.++-.+.|.++||.+.|+
T Consensus        24 ~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~--------~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~   95 (448)
T COG2271          24 KRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIED--------GGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRY   95 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHh--------cCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCce
Confidence            444445555555555544    4456667777644        3577789999999999999999999999999999999


Q ss_pred             HhHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhh
Q 013312           83 MLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTL  162 (445)
Q Consensus        83 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~  162 (445)
                      .+..++++.++.+++++++++   ++.+.+..+++|. ..|.-+|.....++.|++++|||+..++.+.+-++|..+.|.
T Consensus        96 fm~~gLilsai~nil~Gfs~s---~~~~~~l~~lng~-fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~  171 (448)
T COG2271          96 FMAFGLILSAIVNILFGFSPS---LFLFAVLWVLNGW-FQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPL  171 (448)
T ss_pred             eehHHHHHHHHHHHHHhhhhH---HHHHHHHHHHHHH-HhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHH
Confidence            999999999999999999999   9999999999999 889999999999999999999999999999999999988887


Q ss_pred             hh--hh----hchhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCccccchhhhcccccCCCCCCcccccccccchhH
Q 013312          163 AA--RF----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIR  236 (445)
Q Consensus       163 l~--~~----~~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (445)
                      +.  +.    .+||..|++.++++++..++.++..+|+|+...-.+-     ++.+++..+..    .++++.+....++
T Consensus       172 ~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~i-----e~~~~d~~e~~----~~~~~~~~ls~~~  242 (448)
T COG2271         172 VALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPI-----EEYRGDPLEIY----EEEKENEGLTAWQ  242 (448)
T ss_pred             HHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCH-----HHhhcCchhhh----hhhccCCCccHHH
Confidence            77  54    3899999999999999999999999999876543211     11111100000    0011111122344


Q ss_pred             HHHHHhhcchhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhh--cchh
Q 013312          237 DLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPIL--GEAK  314 (445)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~  314 (445)
                      ...+...+||.+|.+.+..++....-++++.|.|.|+.|..|+|..++++..+.+-.+++.+. ++.||++||+  |||.
T Consensus       243 i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~-Ll~GwlSDklfkgrR~  321 (448)
T COG2271         243 IFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGT-LLAGWLSDKLFKGRRG  321 (448)
T ss_pred             HHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHH-HHHHHHHHHhcccccc
Confidence            556678899999999999999999999999999999999999999999999999999999999 8889999986  4554


Q ss_pred             HH-HHHHHHHHHHHHHHHhcCCc-hhHHHH--HHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHH-HHHHHHH
Q 013312          315 LL-SLGLFAACINMFICSISWSA-WVPYAT--TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSF-ANIVSPL  389 (445)
Q Consensus       315 ~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-g~~i~~~  389 (445)
                      .. ++.++...++.+.+...++. ..+...  +..|+......-..-....|..|++..|++.|+...+.++ |.+.+..
T Consensus       322 p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~  401 (448)
T COG2271         322 PMALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGL  401 (448)
T ss_pred             hHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCC
Confidence            44 44455555556666666544 222223  4445555545545556679999999999999999999999 9999999


Q ss_pred             HHHHHHHhhhcCCCCcccchhHHH
Q 013312          390 IFSPLTALFLSKGAPFNFPGFSIM  413 (445)
Q Consensus       390 ~~g~l~~~~~~~~~~~~~~~~~~~  413 (445)
                      ..|++.|.+       ++.+....
T Consensus       402 ~~g~i~d~~-------gW~g~Fi~  418 (448)
T COG2271         402 PLGYIADTW-------GWDGGFIV  418 (448)
T ss_pred             cceeeEecC-------CCcchHHH
Confidence            999998874       56665333

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=100.00  E-value=6.1e-36  Score=281.06  Aligned_cols=355  Identities=11%  Similarity=0.022  Sum_probs=267.0

Q ss_pred             HhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHHHHHHHHHHHHHHhhcCc
Q 013312           25 MMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSI  104 (445)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~  104 (445)
                      ....|.+|.+.+        |++.+..+.|++.+.+.+++.+++++.|+++||+|||+++..+..+.+++.+.+++++| 
T Consensus        26 ~~~~~~lp~i~~--------~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~-   96 (393)
T PRK09705         26 TSVGPLLPQLRQ--------ASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQ-   96 (393)
T ss_pred             hccchhHHHHHH--------HhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcc-
Confidence            556688888864        45777889999999999999999999999999999999999999999999999999999 


Q ss_pred             chhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhhhh-----hchhhHHHHHHHH
Q 013312          105 SFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF-----LSTTSAFQAATIV  179 (445)
Q Consensus       105 ~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~-----~~w~~~f~~~~~~  179 (445)
                        ++.+++.|+++|+ +.+...+...+++.|++| ++|+++++.+..+...|..+|+.++..     .+||+.+.+.++.
T Consensus        97 --~~~ll~~r~l~Gi-g~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~  172 (393)
T PRK09705         97 --SALLLSSALLGGV-GIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALP  172 (393)
T ss_pred             --hHHHHHHHHHHHh-HHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence              9999999999999 888888899999999987 889999999998887777777766654     3799988766655


Q ss_pred             HHHHHHHHHHhccCCCCCCCCcCCccccchhhhcccccCCCCCCcccccccccchhHHHHHHhhcchhhHHHHHHHHHHH
Q 013312          180 SMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSG  259 (445)
Q Consensus       180 ~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (445)
                      .++..+ .++...+.+++++++                        ++ .+   . ++    ..+++..+...+..++..
T Consensus       173 ~~~~~~-~~~~~~~~~~~~~~~------------------------~~-~~---~-~~----~l~~~~~~~l~~~~~~~~  218 (393)
T PRK09705        173 AVVALF-AWWWQSAREVASSHK------------------------TT-TT---P-VR----VVFTPRAWTLGVYFGLIN  218 (393)
T ss_pred             HHHHHH-HHHHHhcCCCccccC------------------------CC-cC---C-cc----cccCHhHHHHHHHHHHHH
Confidence            443322 222222211110000                        00 00   0 11    123344555555566666


Q ss_pred             hhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHhcCCchhH
Q 013312          260 LSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVP  339 (445)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (445)
                      ..+.....+.|.|+++ +|.++.+.+...+..+++.++++ +..+++.||.++|+....+..+..++...+...++....
T Consensus       219 ~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~-~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  296 (393)
T PRK09705        219 GGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGA-LLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPV  296 (393)
T ss_pred             HHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHH-HHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHH
Confidence            6777888999999987 79999999999999999999998 778999999999998888887777776655433322222


Q ss_pred             HHHHHHHhhhhhhhhhHHHHHhcccC-CccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccchhHHHHHHHH
Q 013312          340 YATTAFSVLVVFATPSFRSIVSKQVG-PNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLA  418 (445)
Q Consensus       340 ~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~  418 (445)
                      ....+.+++.+...|.......+..+ ++++|+..|+.+...+++..++|.+.|++.|+.+       .....+.+.+++
T Consensus       297 ~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g-------~~~~~~~~~~~~  369 (393)
T PRK09705        297 LWAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISG-------NYLMDWAFHALC  369 (393)
T ss_pred             HHHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CchHHHHHHHHH
Confidence            22345567777777777766666664 6789999999999999999999999999999873       333345666666


Q ss_pred             HHHHHHHHHhccCCCCC
Q 013312          419 SMVAFIQSLMMSHTPAS  435 (445)
Q Consensus       419 ~~~~~~~~~~~~~~~~~  435 (445)
                      ++.........+++++.
T Consensus       370 ~~~~~~~~~~~~~~~~~  386 (393)
T PRK09705        370 VVGLMIITLRFAPARFP  386 (393)
T ss_pred             HHHHHHHHHHhcccccc
Confidence            66666666666665543

>TIGR00900 2A0121 H+ Antiporter protein

Probab=100.00  E-value=6.8e-36  Score=279.22  Aligned_cols=351  Identities=15%  Similarity=0.160  Sum_probs=284.0

Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHHHHH
Q 013312           11 SHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTL   90 (445)
Q Consensus        11 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~   90 (445)
                      +.++...++..++..+..+.+|.+..|        .+.+..+.|++.+++.++..+++++.|+++||+|||+++..+..+
T Consensus         2 ~~l~~~~~~~~~~~~~~~~~~~~~~~~--------~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~   73 (365)
T TIGR00900         2 RLLFAAQLISLIGTAITQVALPLYVLA--------GTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLI   73 (365)
T ss_pred             eehHHHHHHHHHHHHHHHHHHHHHHHH--------hhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHH
Confidence            346778889999999999999999865        356678899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhc-----CcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhhh
Q 013312           91 SIIPLAILAYRR-----SISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAAR  165 (445)
Q Consensus        91 ~~~~~~~~~~~~-----~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~  165 (445)
                      .+++..+..+.+     +   ++.+++.|++.|+ +.+...+...+++.|++|+++|++++++.+....+|.++||.+++
T Consensus        74 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~  149 (365)
T TIGR00900        74 RAVLVAVLPFVALLGGLN---IWQVYVLAGILAI-AQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGG  149 (365)
T ss_pred             HHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            999888888877     7   8999999999999 889999999999999999999999999999999999999998887


Q ss_pred             h----hchhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCccccchhhhcccccCCCCCCcccccccccchhHHHHHH
Q 013312          166 F----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICL  241 (445)
Q Consensus       166 ~----~~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (445)
                      .    .+||+.|++.++..++..+.. +.+++++++++++++.                       +++..++.++..+.
T Consensus       150 ~l~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~  205 (365)
T TIGR00900       150 LMYATLGIKWAIWVDAVGFAISALLI-VSVRIPELAASEIQAL-----------------------SNAVLRDTREGIKF  205 (365)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHH-HhcccccCCCcccccc-----------------------chhHHHHHHhHHHH
Confidence            6    489999998877665554443 2333221111110000                       00001122333445


Q ss_pred             hhcchhhHHHHHHHHHHHhhhhhhH-HHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHH
Q 013312          242 LRSSVTLSQAAVVAFFSGLSEGGMQ-ASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGL  320 (445)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  320 (445)
                      .+++|.++......++......... .+.|.|.++.+|.++.+.+.......++..++. +..+++.||.++|+.+..+.
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~  284 (365)
T TIGR00900       206 VLKNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGA-LLLGLLGRYFKRMALMTGAI  284 (365)
T ss_pred             HHcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHH-HHHHHHHHHhchhHHHHHHH
Confidence            6677878777777777766666665 788999988889999999999999999999988 77789999999999988887


Q ss_pred             HHHHHHHHHHHhcCC-chhHHH-HHHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013312          321 FAACINMFICSISWS-AWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALF  398 (445)
Q Consensus       321 ~~~~~~~~~~~~~~~-~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~  398 (445)
                      .+.+++...+.+.++ .+.... .++.+++.+...+...++..|.+|+++||++.|+.+...+++..++|.+.|.+.|+.
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~  364 (365)
T TIGR00900       285 FVIGLAILVVGLTPPNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHL  364 (365)
T ss_pred             HHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            777777777766654 444433 466788888889999999999999999999999999999999999999999999864

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=100.00  E-value=1.3e-35  Score=279.02  Aligned_cols=370  Identities=14%  Similarity=0.111  Sum_probs=281.9

Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHHHHH
Q 013312           11 SHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTL   90 (445)
Q Consensus        11 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~   90 (445)
                      .+++...++...+.....|.+|.+.+       ++.+.+..+.|++.+...+...+.+++.|+++||+|||+++..+..+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~   85 (400)
T PRK11646         13 YFLLIDNMLVVLGFFVVFPLISIRFV-------DQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLM   85 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHH
Confidence            66778888999999999999999875       34477788999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhhhhh---
Q 013312           91 SIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL---  167 (445)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~---  167 (445)
                      .+++.+.+.++++   ++.+++.|+++|+ +.+...|...+++.|++|+|+|++++++.+...++|..+||.+++.+   
T Consensus        86 ~~~~~~~~~~~~~---~~~l~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~~  161 (400)
T PRK11646         86 RAAGFATMAIAHE---PWLLWLSCILSGL-GGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQY  161 (400)
T ss_pred             HHHHHHHHHHhcc---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999998   8999999999999 77888899999999999999999999999999999999999988874   


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCccccchhhhcccccCCCCCCcccccccccchhHHHHHHhhcchh
Q 013312          168 STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVT  247 (445)
Q Consensus       168 ~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (445)
                      +||+.|++.++..++..+...+..||.++++.+                            .    +.++.++...++|.
T Consensus       162 g~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~----------------------------~----~~~~~~~~~~~~~~  209 (400)
T PRK11646        162 DFRLVCATGAVLFVLAAAFNAWLLPAYKLSTVR----------------------------T----PVREGMTRVLRDKR  209 (400)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhCCcccccccc----------------------------h----hhHHHHHHHHcCch
Confidence            899999998877666655554555553211000                            0    01111222445565


Q ss_pred             hHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHH
Q 013312          248 LSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINM  327 (445)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  327 (445)
                      ++...+..+...........+.|.|.++.. .++.+.+.+.+..++..........++..||.+.++.+..+..+..++.
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~  288 (400)
T PRK11646        210 FVTYVLTLTGYYMLAVQVMLMLPIMVNDIA-GSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSM  288 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhHHhhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence            554444433333333334567899998854 4778889888888777766664554444456666666777777777777


Q ss_pred             HHHHhcCCchhHHH-HHHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcc
Q 013312          328 FICSISWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFN  406 (445)
Q Consensus       328 ~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~  406 (445)
                      ..+...++.+.... ..+++.+.+...|...++..+..|+++||+++|+.+....+|..+||.+.|++.|+.++.    +
T Consensus       289 ~~l~~~~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~----~  364 (400)
T PRK11646        289 FPIGMVSNLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKAL----N  364 (400)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhc----C
Confidence            77766666554433 356677777888899999999999999999999999999999999999999999986332    2


Q ss_pred             cchhHHHHHHHHHHHHHHHHHh
Q 013312          407 FPGFSIMCIGLASMVAFIQSLM  428 (445)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~  428 (445)
                      .....+...+.+.+++.+....
T Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~  386 (400)
T PRK11646        365 QPELPWMMLGIIGLITLLALYW  386 (400)
T ss_pred             CcchHHHHHHHHHHHHHHHHHH
Confidence            2333455555555555544443

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=100.00  E-value=2e-36  Score=290.83  Aligned_cols=393  Identities=12%  Similarity=0.065  Sum_probs=274.5

Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHHHHHHH
Q 013312           13 LFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSI   92 (445)
Q Consensus        13 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~   92 (445)
                      +++..++.+++.....+..|.+.+        +++++..+.|++.+++.+++.+++++.|+++||+|||+++..+.++.+
T Consensus        34 ~~~~~~~~y~~r~~~~~~~~~i~~--------~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~  105 (467)
T PRK09556         34 VFIGYLTMYLIRKNFKAAQNDMIS--------TYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSA  105 (467)
T ss_pred             HHHHHHHHHHHhcChhhhhHHHHH--------hcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHH
Confidence            344445555667777788888764        457777899999999999999999999999999999999998888887


Q ss_pred             HHHHHHHh-----hcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhhhh-
Q 013312           93 IPLAILAY-----RRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF-  166 (445)
Q Consensus        93 ~~~~~~~~-----~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~-  166 (445)
                      +.....++     +++   ++.+++.|+++|+ +.+...|...++++|++|+++|++++|+.+...++|.++++.+... 
T Consensus       106 ~~~~~~~~~~~~~~~~---~~~l~~~r~l~G~-~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~  181 (467)
T PRK09556        106 ICMLGFGASLGSGSVS---LGLMIALWALSGF-FQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWG  181 (467)
T ss_pred             HHHHHHHHHHhcccch---HHHHHHHHHHHHH-HHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHH
Confidence            77766655     577   9999999999999 8888889999999999999999999999999999999998877643 


Q ss_pred             ---h---chhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCccccchhhhcccccCCCCCCcccccccccchhHH-HH
Q 013312          167 ---L---STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRD-LI  239 (445)
Q Consensus       167 ---~---~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  239 (445)
                         .   +||..|.+.+++.++..+..++..+++|++.+..++.+.    ..+...+ ++  +  +.+ +++.+.++ ..
T Consensus       182 ~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~~~~----~~~~~~~-~~--~--~~~-~~~~~~~~~~~  251 (467)
T PRK09556        182 ANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGKAEEI----FGEPISE-ED--K--ETE-STDMTKWQIFV  251 (467)
T ss_pred             HHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCChhhc----ccCccch-hh--h--ccc-cccCcHHHHHH
Confidence               1   588889888877776666666666766543222111000    0000000 00  0  000 00011122 22


Q ss_pred             HHhhcchhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHH
Q 013312          240 CLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLG  319 (445)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  319 (445)
                      +...++|.++...+..++..........+.|.|+++.+|+|+.+.+.......++.+++. +..|+++||+++|+.....
T Consensus       252 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~-~~~G~lsDr~g~r~~~~~~  330 (467)
T PRK09556        252 EYVLKNPVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGS-LLWGWLSDLANGRRALVAC  330 (467)
T ss_pred             HHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCCchHHHH
Confidence            335677888888888887777777788999999998899999999999998999998988 8889999999998876654


Q ss_pred             HHHHHHHHHH--HHhcCCchhHHH-HHHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHH-HHHHHHHHHHHHH
Q 013312          320 LFAACINMFI--CSISWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSF-ANIVSPLIFSPLT  395 (445)
Q Consensus       320 ~~~~~~~~~~--~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-g~~i~~~~~g~l~  395 (445)
                      .....++...  +...++.+.... .++.|+..............|.+|++.+|++.|+.+...++ |..++|.+.|++.
T Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~  410 (467)
T PRK09556        331 IALALIIFTLGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIA  410 (467)
T ss_pred             HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHh
Confidence            4433333222  222233333322 23344333232333345677999999999999999999997 7799999999999


Q ss_pred             Hh-hhcCC----CCcccchhHHHHHHHHHHHHHHHHHhc
Q 013312          396 AL-FLSKG----APFNFPGFSIMCIGLASMVAFIQSLMM  429 (445)
Q Consensus       396 ~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (445)
                      |. ..+..    ...++.. .|.+..++.+++.+..+.+
T Consensus       411 ~~~~~g~~~~~~~~~~~~~-~f~~~~~~~~~~~~~~~~~  448 (467)
T PRK09556        411 DPTKNGTPIFGYTLTGWAG-TFAALDIAAIGCICLMAIV  448 (467)
T ss_pred             cccccccccccccccChHH-HHHHHHHHHHHHHHHHHHH
Confidence            92 11100    0112333 3455555556555555444

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=100.00  E-value=5.5e-35  Score=282.28  Aligned_cols=366  Identities=15%  Similarity=0.100  Sum_probs=257.2

Q ss_pred             HhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHH-HHHHHHHHHHHhhhhccccccccCchhHhH
Q 013312            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGF-QQAIIGLGTLVMMPVIGNLSDQYGRKAMLT   85 (445)
Q Consensus         7 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~-~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~   85 (445)
                      ++.+....++.+++.++..++....|.+.++.. ++.++ ..+ ....+ ..++..+++.++++++|+++||+|||+++.
T Consensus        15 ~~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~-~~~~~-~~~-~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~   91 (490)
T PRK10642         15 RKAITAASLGNAMEWFDFGVYGFVAYALGKVFF-PGADP-SVQ-MIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILA   91 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-CCCCc-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence            445666678889999999999888887766542 22222 111 11111 358888999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhcCcchhH--------HHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhh
Q 013312           86 LPLTLSIIPLAILAYRRSISFFY--------AYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASF  157 (445)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~  157 (445)
                      .+.++++++++++++++|   ++        .+++.|+++|+ +.|..++...++++|++|+++|+++.++.+.+..+|.
T Consensus        92 ~~~~l~~i~~~~~a~~~~---~~~~g~~a~~~l~~~R~l~G~-g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~  167 (490)
T PRK10642         92 ITIVIMSISTFCIGLIPS---YATIGIWAPILLLLCKMAQGF-SVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGF  167 (490)
T ss_pred             HHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHHHHh-HhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHH
Confidence            999999999999999999   65        38999999999 8899999999999999999999999999998888888


Q ss_pred             hhhhhhh----h--------hhchhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCccccchhhhcccccCCCCCCcc
Q 013312          158 VCGTLAA----R--------FLSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVK  225 (445)
Q Consensus       158 ~~g~~l~----~--------~~~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (445)
                      .+|+.+.    .        .+|||++|++.+++.++. ++....+||+|+..+++++.+       +.. ++.      
T Consensus       168 ~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~-~~~~~~~~esp~~~~~~~~~~-------~~~-~~~------  232 (490)
T PRK10642        168 VLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIG-LYLRHALEETPAFQQHVDKLE-------QGD-REG------  232 (490)
T ss_pred             HHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHH-HHHHHcCCCChhHHHHHHhhh-------hhc-ccc------
Confidence            7776443    2        258999999987665543 444567888765322110000       000 000      


Q ss_pred             cccccccchhHHHHHHhhcchhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 013312          226 IPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPL  305 (445)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~  305 (445)
                       ..++++.++++.++.  +.+.+.......++....++....+.|.|+++.+|++..+.+.......++..++. +..++
T Consensus       233 -~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~-~~~g~  308 (490)
T PRK10642        233 -LQDGPKVSFKEIATK--HWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQ-PVMGL  308 (490)
T ss_pred             -ccccccCCHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence             000111233433221  11222222333344556677778899999988789998887777777777787877 77899


Q ss_pred             hhhhhcchhHHHHHHHHHHHHH-HHHH--hcCCchhHHHH-HHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHH
Q 013312          306 LAPILGEAKLLSLGLFAACINM-FICS--ISWSAWVPYAT-TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISS  381 (445)
Q Consensus       306 l~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~  381 (445)
                      ++||+|||+.+..+.+...+.. ..+.  ..++...++.. .+.+++.+...+....+..+.+|++.||++.|..+....
T Consensus       309 l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~  388 (490)
T PRK10642        309 LSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISV  388 (490)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHH
Confidence            9999999998877765433322 2122  22233333332 445555556666677788899999999999998777777


Q ss_pred             HHHHHHHHHHHHHHHhh
Q 013312          382 FANIVSPLIFSPLTALF  398 (445)
Q Consensus       382 ~g~~i~~~~~g~l~~~~  398 (445)
                      +++.++|.+.|++.+..
T Consensus       389 ~~g~~~p~i~g~l~~~~  405 (490)
T PRK10642        389 LVAGLTPTLAAWLVEST  405 (490)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            88889999999998764

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=100.00  E-value=9.7e-36  Score=287.70  Aligned_cols=379  Identities=16%  Similarity=0.096  Sum_probs=297.1

Q ss_pred             hhHhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHh
Q 013312            5 KEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAML   84 (445)
Q Consensus         5 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l   84 (445)
                      +++..+..+.+..++..++..++...+|.+.+|        ++.+..+.+|+.+.+.++...+.+++|+++||+|||+++
T Consensus         3 ~~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~--------l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l   74 (495)
T PRK14995          3 RQWLTLVIIVLVYIPVAIDATVLHVAAPTLSMT--------LGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLL   74 (495)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence            344567788889999999999999999999754        466667889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCC-CccchhhHHHHHHHHHhhhhhhhhhh
Q 013312           85 TLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNI-SERQRASAFGILLGVLSASFVCGTLA  163 (445)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~g~~l  163 (445)
                      +.+..+.+++++++++++|   ++.++++|+++|+ +.+...|.....+.+.+ |+++|++++++......+|..+||.+
T Consensus        75 ~~~~~~~~~~~~~~~~a~~---~~~li~~r~l~G~-g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~l  150 (495)
T PRK14995         75 MLGGTLFGLASLAAAFSPT---ASWLIATRALLAI-GAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLV  150 (495)
T ss_pred             HHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999   9999999999999 88888888888787765 67999999999999999999999999


Q ss_pred             hhhh----chhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCccccchhh--------hcccccCCCCCCc-------
Q 013312          164 ARFL----STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEE--------TEGVNQNESNSPV-------  224 (445)
Q Consensus       164 ~~~~----~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~-------  224 (445)
                      ++.+    +||+.|++...+.++..++..+.+||++++++++.|..+.....        .-....+.+....       
T Consensus       151 gg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  230 (495)
T PRK14995        151 GGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLL  230 (495)
T ss_pred             HHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHH
Confidence            8874    89999999988888777777777887654332222222211000        0000000110000       


Q ss_pred             ---------ccccccccchhHHHHHHhhcchhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHH
Q 013312          225 ---------KIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAG  295 (445)
Q Consensus       225 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~  295 (445)
                               ...+.+.+++..+ ++ ++++|.+....+..++......+...+.|.|+++.+|+|+.+.|.......++.
T Consensus       231 ~~~~~l~~f~~~e~~~~~p~~~-~~-lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~  308 (495)
T PRK14995        231 TGALLLGLFIRTQLAASRPMID-MR-LFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVAS  308 (495)
T ss_pred             HHHHHHHHHHHHHhcCCCCCcC-HH-HhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence                     0001111122222 12 456777777777777777777778889999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHhc---CCchhHHH-HHHHHhhhhhhhhhHHHHHhcccCCccchh
Q 013312          296 TISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSIS---WSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGK  371 (445)
Q Consensus       296 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~  371 (445)
                      .++. ++.|++.||+++|+.+..+..+..++...+...   ++.+.... ..+.|++.+...+.......+.+|+++++.
T Consensus       309 ~~~~-~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~  387 (495)
T PRK14995        309 GFSG-PIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAA  387 (495)
T ss_pred             HHHH-HHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcch
Confidence            9988 888999999999999888888877776655432   23333333 467788888888888888999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013312          372 AQGCISGISSFANIVSPLIFSPLTALF  398 (445)
Q Consensus       372 ~~g~~~~~~~~g~~i~~~~~g~l~~~~  398 (445)
                      +.++.++.+++|+.+|+.+.|.++++.
T Consensus       388 ~~~~~~~~~~lG~~~G~ai~g~i~~~~  414 (495)
T PRK14995        388 AGAIETMAYELGAGLGIAIFGLLLSRS  414 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999998753

>PRK10489 enterobactin exporter EntS; Provisional

Probab=100.00  E-value=2.9e-35  Score=279.39  Aligned_cols=376  Identities=13%  Similarity=0.101  Sum_probs=286.0

Q ss_pred             HhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHH
Q 013312            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (445)
Q Consensus         7 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~   86 (445)
                      ++.+..++...++..++..+..+.+|.+.++.        +.+..+.|++.+.+.++..+++++.|+++||+|||+++..
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~   87 (417)
T PRK10489         16 HPAFRAVFIARFISIFGLGLLGVAVPVQIQMM--------TGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILL   87 (417)
T ss_pred             CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH--------HCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEe
Confidence            45566777788899999999999999998653        4456789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHh-----hcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhh
Q 013312           87 PLTLSIIPLAILAY-----RRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGT  161 (445)
Q Consensus        87 ~~~~~~~~~~~~~~-----~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~  161 (445)
                      +..+.+++....+.     .++   ++.+++.|++.|+ +.+...+...+++.|+.|+++|+++.++.+...++|..+||
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~  163 (417)
T PRK10489         88 ARGTCGLGFIGLALNAFLPEPS---LLAIYLLGLWDGF-FGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISP  163 (417)
T ss_pred             hHHHHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHH-HHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHH
Confidence            88888777665542     345   7888999999999 77888888999999999999999999999999999999999


Q ss_pred             hhhhhh----chhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCccccchhhhcccccCCCCCCcccccccccchhHH
Q 013312          162 LAARFL----STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRD  237 (445)
Q Consensus       162 ~l~~~~----~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (445)
                      .+++.+    +|++.|++.++..++..+. .+.+||++++++++                           ++..++.++
T Consensus       164 ~l~g~l~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~---------------------------~~~~~~~~~  215 (417)
T PRK10489        164 ALGGLLIAAGGVAWNYGLAAAGTFITLLP-LLRLPALPPPPQPR---------------------------EHPLRSLLA  215 (417)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHhCCCCCCCCccc---------------------------ccchHHHHH
Confidence            988763    8999998887776555443 45667653321110                           000112233


Q ss_pred             HHHHhhcchhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHH
Q 013312          238 LICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLS  317 (445)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  317 (445)
                      .++..+++|.++...+..++... ......++|.|.++.+|.++.+.|++.+..+++.+++. ++.+++.||.++++.+.
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~-~~~~~l~~~~~~~~~l~  293 (417)
T PRK10489        216 GFRFLLASPVVGGIALLGGLLTM-ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGA-LTSGWLAHSARPGLLML  293 (417)
T ss_pred             HHHHHHcChHHHHHHHHHHHHHH-HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHH-HHHHHhhhccCcchHHH
Confidence            34445566666555544444332 34567789999998889999999999999999999988 77889999977777888


Q ss_pred             HHHHHHHHHHHHHHhcCCchhHHH-HHHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013312          318 LGLFAACINMFICSISWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTA  396 (445)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~  396 (445)
                      .+..+..++.+.+.+.++.+.... ..++|++.+...+...+++.|..|++.||+++|+.+...++|..+||.+.|++.+
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~  373 (417)
T PRK10489        294 LSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGA  373 (417)
T ss_pred             HHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHH
Confidence            887777777777666665544333 3566777777778888899999999999999999999999999999999999999


Q ss_pred             hhhcCCCCcccchhHHHHHHHHHHHHHHHHHhccC
Q 013312          397 LFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMSH  431 (445)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (445)
                      ..       +.........++..+++.+.....++
T Consensus       374 ~~-------g~~~~~~~~~~~~~~~~~~~~~~~~~  401 (417)
T PRK10489        374 MM-------TPVASASASGFGLLIIGVLLLLVLGE  401 (417)
T ss_pred             Hh-------chhhHHHHHHHHHHHHHHHHHHhccc
Confidence            86       33333233333444444444444443

>PRK03633 putative MFS family transporter protein; Provisional

Probab=100.00  E-value=5.4e-35  Score=274.03  Aligned_cols=370  Identities=14%  Similarity=0.090  Sum_probs=277.0

Q ss_pred             chhhHhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchh
Q 013312            3 MEKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKA   82 (445)
Q Consensus         3 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~   82 (445)
                      |++++|.++.++.+.++..++.++..|.+|.+.+|        ++.+..+.|++.+.+.++..+++++.|+++||+|||+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~--------~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~   72 (381)
T PRK03633          1 MSTYTRPVLLLLCGLLLLTLAIAVLNTLVPLWLAQ--------EHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNR   72 (381)
T ss_pred             CcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH--------cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            46778889999999999999999999999999864        3666788999999999999999999999999999999


Q ss_pred             HhHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhh
Q 013312           83 MLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTL  162 (445)
Q Consensus        83 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~  162 (445)
                      ++..+.++.+++...++++++   ++.+++.|+++|+ +.+...|...+.+.|..++++|+++++..+...++|..+||.
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~l~G~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~  148 (381)
T PRK03633         73 SYYLASLIFAAGCAGLGLMVG---FWSWLAWRFVAGI-GCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQL  148 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999   9999999999999 888888888888889999999999999999999999999999


Q ss_pred             hhhhhch---hhHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCccccchhhhcccccCCCCCCcccccccccchhHHHH
Q 013312          163 AARFLST---TSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLI  239 (445)
Q Consensus       163 l~~~~~w---~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (445)
                      +++.+..   +...+..+.........  ...+.+++++++                          +   +..+.++  
T Consensus       149 ~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--------------------------~---~~~~~~~--  195 (381)
T PRK03633        149 LVSKVSTELMSVLPWVTGLVLAAILPL--LFTRILNQQAEN--------------------------H---DSTSIWP--  195 (381)
T ss_pred             HHhcccccccchHHHHHHHHHHHHHHH--HHhcccCCCCCC--------------------------C---CCCCHHH--
Confidence            9887522   22233333222222111  112221111000                          0   0011222  


Q ss_pred             HHhhcchhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHH
Q 013312          240 CLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLG  319 (445)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  319 (445)
                        ..++|.++......+...........++|.|.++ .|.++.+.+...+...+..++++ +..+++.||+++|+.+..+
T Consensus       196 --~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~-~~~g~l~dr~~~~~~l~~~  271 (381)
T PRK03633        196 --MLKLRQARLGVNGCIISGIVLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQ-WPIGRLADRFGRLLVLRVQ  271 (381)
T ss_pred             --HHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHH-hhhHHHHHHcCcHHHHHHH
Confidence              2344445444333444444555667789999987 69999999999999999999988 7779999999999988888


Q ss_pred             HHHHHHHHHHHHhcCCchhHHHHHHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013312          320 LFAACINMFICSISWSAWVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFL  399 (445)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~  399 (445)
                      .....++.....  ..........+.+.+.....|...+...|..|+++++...+..+...++|..++|.+.|++.|+. 
T Consensus       272 ~~~~~~~~~~~~--~~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~-  348 (381)
T PRK03633        272 VFVVILGSIAML--SQAAMAPALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNY-  348 (381)
T ss_pred             HHHHHHHHHHHh--hhHHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence            777776655443  22222223355566666678999999999999888888888888889999999999999999986 


Q ss_pred             cCCCCcccchhHHHHHHHHHHHHHHHHHhccC
Q 013312          400 SKGAPFNFPGFSIMCIGLASMVAFIQSLMMSH  431 (445)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (445)
                            ++.. .+.+.+.+.++.....++.++
T Consensus       349 ------g~~~-~f~~~~~~~l~~~~~~~~~~~  373 (381)
T PRK03633        349 ------SDNL-LFIMIASVSFIYLLMLLRKAG  373 (381)
T ss_pred             ------CccH-HHHHHHHHHHHHHHHHHhccC
Confidence                  3222 355555555555544444433

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=100.00  E-value=3.1e-35  Score=288.95  Aligned_cols=395  Identities=15%  Similarity=0.134  Sum_probs=284.2

Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHHHHHH
Q 013312           12 HLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLS   91 (445)
Q Consensus        12 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~   91 (445)
                      .+.++.+...+....+.+.+|.+..+        ++++..+.+++.+++.++.+++++++|+++||+|||++++++.++.
T Consensus       171 i~~l~~~~~g~d~~~is~ilp~i~~~--------~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~  242 (742)
T TIGR01299       171 VLGLALMADGVEVFVVGFVLPSAEKD--------LCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVN  242 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH--------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            34444555556666677788877643        4566678899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhhhh-----
Q 013312           92 IIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF-----  166 (445)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~-----  166 (445)
                      +++.++++++++   ++.++++|++.|+ +.+...|...+++.|++|+++|++.++++...+.+|.++++.++..     
T Consensus       243 ~i~~ll~afa~s---~~~llv~R~l~G~-g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~  318 (742)
T TIGR01299       243 GFFAFFSSFVQG---YGFFLFCRLLSGF-GIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHY  318 (742)
T ss_pred             HHHHHHHHHHhh---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999   9999999999999 8888889999999999999999999999999999999888865432     


Q ss_pred             ------------hchhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCc---CCccccchhhhcccccCC------------
Q 013312          167 ------------LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDD---DLTRPIITEETEGVNQNE------------  219 (445)
Q Consensus       167 ------------~~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~---~~~~~~~~~~~~~~~~~~------------  219 (445)
                                  .+||+.+++.++..++. ++..+++||+|+....+   ++..+.+.+....+....            
T Consensus       319 G~~~~~g~~~~~~gWR~l~~i~~lp~ll~-ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~  397 (742)
T TIGR01299       319 GWSFQMGSAYQFHSWRVFVIVCAFPCVFA-IGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHI  397 (742)
T ss_pred             cchhccccccccccHHHHHHHHHHHHHHH-HHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHH
Confidence                        26899998888776554 45567899998753222   222222222111110000            


Q ss_pred             -----CC-----CCcccccc-----cccc----hhHHHHHHhhcc---hhhHHHHHHHHHHHhhhhhhHHHHHHHHHhh-
Q 013312          220 -----SN-----SPVKIPVC-----KKIP----SIRDLICLLRSS---VTLSQAAVVAFFSGLSEGGMQASFLYFLKAQ-  276 (445)
Q Consensus       220 -----~~-----~~~~~~~~-----~~~~----~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  276 (445)
                           +.     ++......     +...    .+.+ ++.++++   +..+.+.+..+...+.++++..|+|..+++. 
T Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~lf~~~~~~~tl~l~~~wf~~~~~yygl~~w~P~~~~~~~  476 (742)
T TIGR01299       398 KTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGN-FLRCFNPEVREITIKLMGVWFTLSFGYYGLSVWFPDMIKHLQ  476 (742)
T ss_pred             HHhhhhhhhhcccccccchhhcchhhhhhhhhhHHHH-HHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 00     00000000     0000    0011 1122232   3345566777888888999999999876441 


Q ss_pred             ---c-----------------CCch-------------------------------------------------------
Q 013312          277 ---F-----------------HFNK-------------------------------------------------------  281 (445)
Q Consensus       277 ---~-----------------g~~~-------------------------------------------------------  281 (445)
                         +                 +++.                                                       
T Consensus       477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~  556 (742)
T TIGR01299       477 ADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLF  556 (742)
T ss_pred             HHHHHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhhhc
Confidence               0                 0000                                                       


Q ss_pred             --------------------------------------hhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHH
Q 013312          282 --------------------------------------NQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAA  323 (445)
Q Consensus       282 --------------------------------------~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  323 (445)
                                                            ........+.+++.+++. ++.++++||+|||+++..+.++.
T Consensus       557 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~-il~g~L~Dr~GRr~~l~~~~~ls  635 (742)
T TIGR01299       557 ENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGN-IVSALLMDKIGRLRMLAGSMVLS  635 (742)
T ss_pred             cccchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCHHHHHHHHHHH
Confidence                                                  011233455667777877 88899999999999999999999


Q ss_pred             HHHHHHHHhcCCchhHHH-HHHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 013312          324 CINMFICSISWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKG  402 (445)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~  402 (445)
                      +++.+++.+.++.+..+. .++.+++.+...+....+++|.+|++.|++++|+.+....+|.+++|.+.|.+.+..    
T Consensus       636 ai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~----  711 (742)
T TIGR01299       636 CISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGIT----  711 (742)
T ss_pred             HHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----
Confidence            998888887766544443 355677777788889999999999999999999999999999999999999887742    


Q ss_pred             CCcccchhHHHHHHHHHHHHHHHHHhcc
Q 013312          403 APFNFPGFSIMCIGLASMVAFIQSLMMS  430 (445)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (445)
                           ...++++.+++.+++.+..+.++
T Consensus       712 -----~~~pf~i~a~~lll~~ll~~~LP  734 (742)
T TIGR01299       712 -----KAAPILFASAALACGGLLALKLP  734 (742)
T ss_pred             -----hHHHHHHHHHHHHHHHHHHHhCC
Confidence                 23356666666677666666663

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=100.00  E-value=2.2e-34  Score=270.22  Aligned_cols=335  Identities=12%  Similarity=0.143  Sum_probs=256.4

Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHHHHHHHHH
Q 013312           15 VTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIP   94 (445)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~   94 (445)
                      ...+..........+.+|.+.+        +++.+..+.|+..+++.++..+++++.|+++||+|||+++..+.++.+++
T Consensus        27 ~~~~~~~~~~~~~~~~l~~~~~--------~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~   98 (394)
T PRK10213         27 FCVACLIIVEFLPVSLLTPMAQ--------DLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLS   98 (394)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHH--------HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHH
Confidence            3333344444455667787754        45777889999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhhhh----hchh
Q 013312           95 LAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF----LSTT  170 (445)
Q Consensus        95 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~----~~w~  170 (445)
                      .+++.++++   ++.+++.|+++|+ +.+...|...+++.|++|+|+|++++++.....++|..+||.+++.    ++||
T Consensus        99 ~~~~~~~~~---~~~l~~~r~l~G~-~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~  174 (394)
T PRK10213         99 CLLVSFANS---FSLLLIGRACLGL-ALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWR  174 (394)
T ss_pred             HHHHHHHCh---HHHHHHHHHHHHH-hhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHH
Confidence            999999999   9999999999999 8888889999999999999999999999999999999999988876    4999


Q ss_pred             hHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCccccchhhhcccccCCCCCCcccccccccchhHHHHHHhhcchhhHH
Q 013312          171 SAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQ  250 (445)
Q Consensus       171 ~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (445)
                      +.|++.+++.++..+......||+++++++                              ..   ++.++ ..++|.++.
T Consensus       175 ~~f~~~~~l~~~~~l~~~~~~p~~~~~~~~------------------------------~~---~~~~~-~l~~~~~~~  220 (394)
T PRK10213        175 NVFNAAAVMGVLCIFWIIKSLPSLPGEPSH------------------------------QK---QNTFR-LLQRPGVMA  220 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCccccc------------------------------ch---hHHHH-HhcCHHHHH
Confidence            999998877766555544456664321100                              00   11122 345666666


Q ss_pred             HHHHHHHHHhhhhhhHHHH-HHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHH
Q 013312          251 AAVVAFFSGLSEGGMQASF-LYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFI  329 (445)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  329 (445)
                      ..+..++..........++ |.|.+ ++|+++.+.+......+++.+++. ++.+++.||.+++..............++
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~g~~~~~~~~~~iig~-~~~~~l~~r~~~~~l~~~~~~~~~~~~~l  298 (394)
T PRK10213        221 GMIAIFMSFAGQFAFFTYIRPVYMN-LAGFGVDGLTLVLLSFGIASFVGT-SLSSFILKRSVKLALAGAPLVLAVSALVL  298 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-hcCCChhHHHHHHHHHHHHHHHHH-HHHHHHHhccchhHHHHHHHHHHHHHHHH
Confidence            5555555555555556666 55554 579999999999999999999998 78899999965443344333334443444


Q ss_pred             HHhcCCchhHHH-HHHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013312          330 CSISWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALF  398 (445)
Q Consensus       330 ~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~  398 (445)
                      ....++.+.... ..+.|++.+...+...+.+++..| +++++..+......++|..+||.+.|+++|..
T Consensus       299 ~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~  367 (394)
T PRK10213        299 TLWGSDKIVATGVAIIWGLTFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNI  367 (394)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            444455554444 466788888889999989988887 56778888888888999999999999999975

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=100.00  E-value=6.6e-35  Score=275.62  Aligned_cols=372  Identities=11%  Similarity=0.126  Sum_probs=276.4

Q ss_pred             hhHhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHh
Q 013312            5 KEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAML   84 (445)
Q Consensus         5 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l   84 (445)
                      |+++.+..+.+..++..++.++..|.+|.+.++       +++.+..+.|++.+++.+++.+++++.|+++||+|||+++
T Consensus        12 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~-------~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l   84 (399)
T PRK05122         12 RLTLRIVSIVMFTFISYLTIGLPLAVLPGYVHD-------QLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAV   84 (399)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchH
Confidence            456778889999999999999999999998753       3466778899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhc---Cc--chhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhh
Q 013312           85 TLPLTLSIIPLAILAYRR---SI--SFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVC  159 (445)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~---~~--~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~  159 (445)
                      ..+.++.+++.+.+.++.   +.  ..++.+++.|+++|+ +.+...+...+++.|+.|+|+|++++++.+.....|..+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~  163 (399)
T PRK05122         85 VFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGI-GESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAI  163 (399)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHh-hHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHH
Confidence            999998888776665532   21  016688999999999 888888999999999999999999999999988889888


Q ss_pred             hhhhhhh----hchhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCccccchhhhcccccCCCCCCcccccccccchh
Q 013312          160 GTLAARF----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSI  235 (445)
Q Consensus       160 g~~l~~~----~~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (445)
                      ||.+++.    .+|++.+++..++.++..+.. ...|+++   +++                            +++.+.
T Consensus       164 g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~----------------------------~~~~~~  211 (399)
T PRK05122        164 GAPLGVLLYHWGGLAGLGLLIMLLALLGLLLA-RPRPAVP---PVK----------------------------GERLPF  211 (399)
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHHHHHHH-hcCCCCC---CCC----------------------------ccchhH
Confidence            8888765    489998887666544332221 1112111   000                            000012


Q ss_pred             HHHHHHhhcchhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhH
Q 013312          236 RDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKL  315 (445)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  315 (445)
                      ++..+.      .+.......+..........+.|.|.++ .|++  +.+.......++.+++. +..+++.||+++|+.
T Consensus       212 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~-~~~g~l~~r~~~~~~  281 (399)
T PRK05122        212 RRVLGR------VWPYGMGLALASIGFGTIATFITLYYAA-RGWD--GAALALTLFGVAFVGAR-LLFGNLINRLGGLRV  281 (399)
T ss_pred             HHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cccc--cchHHHHHHHHHHHHHH-HHHHHHHHHhccHHH
Confidence            221111      1111222233344555666788888876 4663  34566677778888877 777999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCchhHHH-HHHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 013312          316 LSLGLFAACINMFICSISWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPL  394 (445)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l  394 (445)
                      +..+..+..++...+...++.+.... ..+.|++.+...+.......|..|+++||++.|+.+...++|..++|.+.|.+
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l  361 (399)
T PRK05122        282 AIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLV  361 (399)
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888777777666554444 36678888888888888888999999999999999999999999999999999


Q ss_pred             HHhhhcCCCCcccchhHHHHHHHHHHHHHHHHHhccCCCC
Q 013312          395 TALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMSHTPA  434 (445)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (445)
                      .++.       ++.. .+.+.+++.+++.+.....+++++
T Consensus       362 ~~~~-------g~~~-~~~~~~~~~~~~~~~~~~~~~~~~  393 (399)
T PRK05122        362 ASWF-------GYPS-IFLAAALAALLGLALTWLLYRRAP  393 (399)
T ss_pred             HHHc-------CHHH-HHHHHHHHHHHHHHHHHHhccccc
Confidence            9875       3322 455666666666666666655444

>TIGR00893 2A0114 d-galactonate transporter

Probab=100.00  E-value=1.5e-35  Score=280.17  Aligned_cols=380  Identities=16%  Similarity=0.146  Sum_probs=276.1

Q ss_pred             HHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHHHHHHHHHHHH
Q 013312           18 FLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAI   97 (445)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~   97 (445)
                      ++..++...+.+..|.+.+        +++.+..+.|++.+++.++..+++++.|+++||+|||+++..+.++.+++..+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~--------~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~   75 (399)
T TIGR00893         4 VINYLDRANLSFAAPMLQE--------DLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGL   75 (399)
T ss_pred             hHHHHHHHhhhHhHHHHHH--------hhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHH
Confidence            3455666667777777653        44667788999999999999999999999999999999999999999999999


Q ss_pred             HHhhcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhhhh----hchhhHH
Q 013312           98 LAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF----LSTTSAF  173 (445)
Q Consensus        98 ~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~----~~w~~~f  173 (445)
                      ++++++   ++.+++.|++.|+ +.+...+...+++.|++|+|+|++++++.+...++|..++|.+++.    .+||+.|
T Consensus        76 ~~~~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~  151 (399)
T TIGR00893        76 QAFAGA---YVSLYILRVLLGA-AEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAF  151 (399)
T ss_pred             HHHHcC---HHHHHHHHHHHHH-HHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHH
Confidence            999999   9999999999999 8888899999999999999999999999999999999999988875    4899999


Q ss_pred             HHHHHHHHHHHHHHHHhccCCCCCCCCcCCccccchhhhcccccCCCCCCcccccccccchhHHHHHHhhcchhhHHHHH
Q 013312          174 QAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAV  253 (445)
Q Consensus       174 ~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (445)
                      ++.+++.++..+...+..||++++++..++.++...  .+.  ...+. +.+++..+....    .+...++|.++...+
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~  222 (399)
T TIGR00893       152 IIEGVLGIIWGVLWLKFIPDPPQKAKWLTEEEKYIV--VGG--LLAEQ-QGKGPSTPKKYQ----IKELLKDRRVWGLAL  222 (399)
T ss_pred             HHHHHHHHHHHHHhhheecCCCCccccCCHHHHhhc--chh--hcccc-ccccccCCCccc----hHHHhcCHHHHHHHH
Confidence            998888777666666667776543322111100000  000  00000 000011111112    222456677887788


Q ss_pred             HHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchh--HHHHHHHH--H--HHHH
Q 013312          254 VAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAK--LLSLGLFA--A--CINM  327 (445)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~--~--~~~~  327 (445)
                      ..++..........+.|.|+++.+|.++.+.+.......+..+++. +..+++.||+++|+  ........  .  ..+.
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (399)
T TIGR00893       223 GQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGM-ILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSL  301 (399)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHH-HHHHHHHHHHhhcccchhHHHHHHHHHHHHHHH
Confidence            8888888888889999999998899999999999999999999988 78899999999886  11111111  1  0111


Q ss_pred             HHHHh--cCCchhHHHHHHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCc
Q 013312          328 FICSI--SWSAWVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPF  405 (445)
Q Consensus       328 ~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~  405 (445)
                      .....  .++.+........+.+.....+...++.+|.+|+++||++.|+.+...++|..++|.+.|.+.|..       
T Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~-------  374 (399)
T TIGR00893       302 LMFATNYVNIPYAALALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATT-------  374 (399)
T ss_pred             HHHHhccchhHHHHHHHHHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCC-------
Confidence            11111  122233333333333333378899999999999999999999999999999999999999999875       


Q ss_pred             ccchhHHHHHHHHHHHHHHHH
Q 013312          406 NFPGFSIMCIGLASMVAFIQS  426 (445)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~  426 (445)
                      +.....+.+.+++.+++.+..
T Consensus       375 g~~~~~~~~~~~~~~~~~~~~  395 (399)
T TIGR00893       375 GSFAGALMVVAALALIGALSY  395 (399)
T ss_pred             CchhHHHHHHHHHHHHHHHHH
Confidence            212223455555555544443

>PRK09952 shikimate transporter; Provisional

Probab=100.00  E-value=6.7e-34  Score=270.80  Aligned_cols=388  Identities=13%  Similarity=0.119  Sum_probs=264.7

Q ss_pred             hHhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhH
Q 013312            6 EIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLT   85 (445)
Q Consensus         6 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~   85 (445)
                      +++.....++..+++.++......+.|.+..+..-++.++. ..........++..++..+++++.|+++||+|||+++.
T Consensus        20 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~   98 (438)
T PRK09952         20 ARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLM   98 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHH
Confidence            34556667778888999998888877766554321122221 11111122334566788899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhcCcchhH--------HHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhh
Q 013312           86 LPLTLSIIPLAILAYRRSISFFY--------AYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASF  157 (445)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~  157 (445)
                      .+.+++++++++++++++   ++        .+++.|+++|+ +.|..+|....++.|++|+++|++..+..+.+..+|.
T Consensus        99 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~R~l~G~-~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~  174 (438)
T PRK09952         99 LTVWMMGIATALIGLLPS---FSTIGWWAPVLLVTLRAIQGF-AVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGL  174 (438)
T ss_pred             HHHHHHHHHHHHHhcCCc---HHHHHHHHHHHHHHHHHHHHh-hhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHH
Confidence            999999999999999999   65        58899999999 8898889999999999999999999999999999998


Q ss_pred             hhhhhhhh------------hhchhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCccccchhhhcccccCCCCCCcc
Q 013312          158 VCGTLAAR------------FLSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVK  225 (445)
Q Consensus       158 ~~g~~l~~------------~~~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (445)
                      ++++.+..            .++||++|++.+++.++. +......||+++..+++++             .++.     
T Consensus       175 ~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~-~~l~~~~~es~~~~~~~~~-------------~~~~-----  235 (438)
T PRK09952        175 LLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIA-LWVRNGMEESAEFEQQQHE-------------QAAA-----  235 (438)
T ss_pred             HHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHH-HHHHHhCCCChhHHHHHhh-------------cccc-----
Confidence            88765432            358999999888765443 3333455665532111100             0000     


Q ss_pred             cccccccchhHHHHHHhhcchhhHHH-HHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 013312          226 IPVCKKIPSIRDLICLLRSSVTLSQA-AVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMP  304 (445)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~  304 (445)
                          +++.+..   +.++++|+.+.. ....++.....+....+.|.|.++.+|++...........+....++. +..|
T Consensus       236 ----~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~-~~~g  307 (438)
T PRK09952        236 ----KKRIPVI---EALLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTI-PCFA  307 (438)
T ss_pred             ----cccCCHH---HHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHHH
Confidence                0000111   113334444333 334444555666778899999988889988765555556666667776 7779


Q ss_pred             HhhhhhcchhHHHHHHHHHHHHHHHHHh---cCC-chhHHH-HHHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHH
Q 013312          305 LLAPILGEAKLLSLGLFAACINMFICSI---SWS-AWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGI  379 (445)
Q Consensus       305 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~  379 (445)
                      +++||++||+.+..+.++..++...+..   ..+ .+.... ..+.+++.+...+..+++..|.+|++.|+++.|+.+..
T Consensus       308 ~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~  387 (438)
T PRK09952        308 WLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQV  387 (438)
T ss_pred             HHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHH
Confidence            9999999999888776665544332222   222 222222 24446677777888889999999999999999987666


Q ss_pred             H-HHHHHHHHHHHHHHHHhhhcCCCCcccchhHHHHHHHHHHHHHHHHHhccC
Q 013312          380 S-SFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMSH  431 (445)
Q Consensus       380 ~-~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (445)
                      . .+++.++|.+.|++.+..++     .+ ...+...+++.+++.+..+..++
T Consensus       388 ~~~lgg~~~p~i~g~l~~~~~~-----~~-~~~~~~~~~~~~i~~v~~~~~~~  434 (438)
T PRK09952        388 ASVVGGGFTPFIAAALVTYFGG-----SW-HSVAIYLLAGCLISAMTALLMKD  434 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCC-----Cc-hHHHHHHHHHHHHHHHHHHHccc
Confidence            5 48999999999999886421     11 12344455555666666555543

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=100.00  E-value=4.6e-34  Score=270.95  Aligned_cols=381  Identities=16%  Similarity=0.188  Sum_probs=286.6

Q ss_pred             hhHhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHh
Q 013312            5 KEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAML   84 (445)
Q Consensus         5 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l   84 (445)
                      +|++.+..+++..++..++.++..|.+|.+.+|.   +.++.+......|++.+++.++..+++++.|+++||+|||+++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~   87 (408)
T PRK09874         11 NWKRNLTVAWLGCFLTGAAFSLVMPFLPLYVEQL---GVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIML   87 (408)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHh---CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHH
Confidence            4677788888999999999999999999998763   2222222234569999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhh
Q 013312           85 TLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAA  164 (445)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~  164 (445)
                      ..+.+..+++.+++.+.++   ++.+++.|++.|+ +.+ ..+...+++.|..|+++|++++++......+|..++|.++
T Consensus        88 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  162 (408)
T PRK09874         88 LRSALGMGIVMVLMGLAQN---IWQFLILRALLGL-LGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAG  162 (408)
T ss_pred             HHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHH-hhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999888   9999999999999 655 4577888999999999999999999999999999998888


Q ss_pred             hh----hchhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCccccchhhhcccccCCCCCCcccccccccchhHHHHH
Q 013312          165 RF----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLIC  240 (445)
Q Consensus       165 ~~----~~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (445)
                      +.    .+||+.|++.+++.++..+...+.+||++++.+++                             +..+.++..+
T Consensus       163 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~  213 (408)
T PRK09874        163 GLLADSYGLRPVFFITASVLFLCFLVTLFCIRENFQPVSKK-----------------------------EMLHMREVVT  213 (408)
T ss_pred             HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCcccccch-----------------------------hhhHHHHHHH
Confidence            75    48999999998887777666666677654221111                             0001122233


Q ss_pred             HhhcchhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchh---hHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHH
Q 013312          241 LLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKN---QFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLS  317 (445)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  317 (445)
                      .+++++..+......+...........+++.|..+..+....   ..+.+....+++..++. +..+++.||+++|+.+.
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~-~~~g~l~dr~g~~~~~~  292 (408)
T PRK09874        214 SLKNPKLVLSLFVTTLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSA-PRLGKLGDRIGPEKILI  292 (408)
T ss_pred             hCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhccccchhHH
Confidence            333333333233334444445555667788888775432221   23555566677777777 67789999999999998


Q ss_pred             HHHHHHHHHHHHHHhcCCchhHHHH-HHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013312          318 LGLFAACINMFICSISWSAWVPYAT-TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTA  396 (445)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~  396 (445)
                      .+..+..++.+.....++.+..... .+.|++.+...+...+...+..|++++|+.++..+....+|..+||.+.|.+.+
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~  372 (408)
T PRK09874        293 TALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISA  372 (408)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHh
Confidence            8888777777766666666655443 667888888889999999999999999999999999999999999999999988


Q ss_pred             hhhcCCCCcccchhHHHHHHHHHHHHHHHHHhccC
Q 013312          397 LFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMSH  431 (445)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (445)
                      ..       ++.. .+.+.+++.+++.+..+...+
T Consensus       373 ~~-------g~~~-~f~~~~~~~l~~~~~~~~~~~  399 (408)
T PRK09874        373 NY-------GFRA-VFLVTAGVVLFNAVYSWNSLR  399 (408)
T ss_pred             hc-------chhH-HHHHHHHHHHHHHHHHHHHHH
Confidence            75       3332 456666666666665554333

>TIGR00891 2A0112 putative sialic acid transporter

Probab=100.00  E-value=6.6e-35  Score=276.58  Aligned_cols=372  Identities=13%  Similarity=0.146  Sum_probs=271.6

Q ss_pred             HhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHH
Q 013312            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (445)
Q Consensus         7 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~   86 (445)
                      ++.+..+++..+.+.++..+..+..|.+.++        ++.+..+.|++.+++.++..+++++.|.++||+|||+++..
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~   82 (405)
T TIGR00891        11 WNAFSAAWLGWLLDAFDFFLVALVLAEVAGE--------FGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVT   82 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence            4556777888889999999999999988643        46677889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhhhh
Q 013312           87 PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF  166 (445)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~  166 (445)
                      +.++.+++.++++++++   ++.+++.|++.|+ +.+...+...+++.|++|+++|++++++.+....+|..+++.+++.
T Consensus        83 ~~~~~~~~~~~~~~~~~---~~~l~~~~~l~G~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~  158 (405)
T TIGR00891        83 SIVLFSAGTLACGFAPG---YITMFIARLVIGI-GMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSL  158 (405)
T ss_pred             HHHHHHHHHHHHHHhcc---HHHHHHHHHHHHh-hhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999   9999999999999 8888889999999999999999999999999999999999988765


Q ss_pred             h----c--hhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCccccchhhhcccccCCCCCCcccccccccchhHHHHH
Q 013312          167 L----S--TTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLIC  240 (445)
Q Consensus       167 ~----~--w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (445)
                      +    +  ||+.|++.++..++. +.....+||+++.++++++.+...+..++..+ ++.   ..+.  ..++...+..+
T Consensus       159 l~~~~~~~w~~~f~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~--~~~~~~~~~~~  231 (405)
T TIGR00891       159 VVPVWGDGWRALFFISILPIIFA-LWLRKNIPEAEDWKEKHAGKALVRTMVDILYG-GEH---RIAN--IVMTLAAAMVQ  231 (405)
T ss_pred             HHHhcCccHHHHHHHHHHHHHHH-HHHHHhCCCChhHHHHhhhhhhhhhHHHHHhc-cch---hhhh--hhhhhhHHhhh
Confidence            3    4  999998876655443 34445677765422211111000000000000 000   0000  00000011011


Q ss_pred             Hhhcc-hhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHH
Q 013312          241 LLRSS-VTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLG  319 (445)
Q Consensus       241 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  319 (445)
                      ...++ +.+........+.+........++|.|+++.+|+++.+.+.+....+++.+++. +..+++.||+++|+.+..+
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~-~~~g~l~dr~g~~~~~~~~  310 (405)
T TIGR00891       232 SAGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGG-CVFGFLGDWLGRRKAYVCS  310 (405)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCchhhhHHH
Confidence            11111 112222333333344445566788999988899999999999999999999988 7889999999999988877


Q ss_pred             HHHHHHHHH-HHHhcCCchhHHHH-HHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013312          320 LFAACINMF-ICSISWSAWVPYAT-TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTAL  397 (445)
Q Consensus       320 ~~~~~~~~~-~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~  397 (445)
                      .....+... .....++.+..... .+.++......+....+++|.+|+++||+++|+.+...+++..++|.+.|.+.|+
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~  390 (405)
T TIGR00891       311 LLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQR  390 (405)
T ss_pred             HHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            765533322 23333344433333 4455556666777888899999999999999999999999999999999999998


Q ss_pred             h
Q 013312          398 F  398 (445)
Q Consensus       398 ~  398 (445)
                      .
T Consensus       391 ~  391 (405)
T TIGR00891       391 L  391 (405)
T ss_pred             c
Confidence            7

>PRK10091 MFS transport protein AraJ; Provisional

Probab=100.00  E-value=4.3e-34  Score=267.90  Aligned_cols=342  Identities=13%  Similarity=0.158  Sum_probs=262.3

Q ss_pred             hhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHH
Q 013312            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP   87 (445)
Q Consensus         8 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~   87 (445)
                      +.++.+.+..+....+.....|.+|.+.+|        ++.+..+.|++.+.+.+++.+++++.|+++||+|||+++..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~   74 (382)
T PRK10091          3 KVILSLALGTFGLGMAEFGIMGVLTELAHD--------VGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFL   74 (382)
T ss_pred             chHHHHHHHHHHHHhhHHHHHhChHHHHHH--------cCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHH
Confidence            466778888889999999999999998754        466667899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhhhh-
Q 013312           88 LTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF-  166 (445)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~-  166 (445)
                      ..+.+++.+++++++|   ++.+++.|++.|+ +.+...+...+++.|+.|+++|+++++.......+|..+||.+++. 
T Consensus        75 ~~~~~~~~~l~~~~~~---~~~l~~~r~l~G~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l  150 (382)
T PRK10091         75 VALCVIGNAMFTLSSS---YLMLAIGRLVSGF-PHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYL  150 (382)
T ss_pred             HHHHHHHHHHHHHhCc---HHHHHHHHHHHHh-hhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHH
Confidence            9999999999999999   9999999999999 8888888888999999999999999999999999999999888765 


Q ss_pred             ---hchhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCccccchhhhcccccCCCCCCcccccccccchhHHHHHHhh
Q 013312          167 ---LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLR  243 (445)
Q Consensus       167 ---~~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (445)
                         .+||+.|++.+++.++..+...+.+||.+++++.                                 +.++.++.+ 
T Consensus       151 ~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~~~~~---------------------------------~~~~~~~~~-  196 (382)
T PRK10091        151 SQEFSWRYTFLLIAVFNIAVLASIYFWVPDIRDEAKG---------------------------------GLREQFHFL-  196 (382)
T ss_pred             hhhccHHHHHHHHHHHHHHHHHHHHHhCCCCCccccc---------------------------------CHHHHHHHh-
Confidence               4899999999988777666666667775321110                                 001112222 


Q ss_pred             cchhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHH
Q 013312          244 SSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAA  323 (445)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  323 (445)
                      +++..+......++..........+.+.|+++..|+++.+.+.+....+++.+++. +..+++.||+++|+.+..+..+.
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~-~~~g~l~~r~~~~~~~~~~~~~~  275 (382)
T PRK10091        197 RSPAPWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGN-LLSGRLSGRYSPLRIAAVTDFII  275 (382)
T ss_pred             cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHh-HHHheeccccCchhHHHHHHHHH
Confidence            34444444444444444444455677788887789999999999999999999998 78899999999999988888887


Q ss_pred             HHHHHHHHh-cCCchhHHH-HHHHHhhhhhhhhhHH-HHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013312          324 CINMFICSI-SWSAWVPYA-TTAFSVLVVFATPSFR-SIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALF  398 (445)
Q Consensus       324 ~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~  398 (445)
                      .++.+.+.. .++.+.... ..+.+.+.....+... ....+..|++.++.+.  .+...++|..+||.+.|.+.|..
T Consensus       276 ~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~Gp~~~G~l~~~~  351 (382)
T PRK10091        276 VLALLMLFFFGGMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAAG--GQIAFNLGSAIGAYCGGMMLTLG  351 (382)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHHH--HHHHHHHHHHHHHHHhHHHHHcc
Confidence            777655543 333333333 2344444443344333 3444444555555543  46778999999999999999975

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=100.00  E-value=1.1e-33  Score=269.24  Aligned_cols=378  Identities=12%  Similarity=0.050  Sum_probs=255.8

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHHHH
Q 013312           10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLT   89 (445)
Q Consensus        10 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~   89 (445)
                      +....++.+++.++...+....|.+.+|....+.+  +.+..+.+.+.+...++..++++++|+++||+|||+++..+.+
T Consensus        24 ~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~  101 (432)
T PRK10406         24 IVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNT--TTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVC  101 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            33445667888999988877777776654211112  2222344555566677777999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCcch-----hHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhh
Q 013312           90 LSIIPLAILAYRRSISF-----FYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAA  164 (445)
Q Consensus        90 ~~~~~~~~~~~~~~~~~-----~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~  164 (445)
                      ++++++++++++++...     +..+++.|+++|+ +.|..+|...++++|++|+++|+++.+..+.....|..+++.+.
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~-g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~  180 (432)
T PRK10406        102 MMCFGSLVIACLPGYETIGTWAPALLLLARLFQGL-SVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVV  180 (432)
T ss_pred             HHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHh-hhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998311     2368999999999 88999999999999999999999999998888888877776543


Q ss_pred             h------------hhchhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCccccchhhhcccccCCCCCCccccccccc
Q 013312          165 R------------FLSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKI  232 (445)
Q Consensus       165 ~------------~~~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (445)
                      .            ..|||++|++.+++.++. ++....+||+++.++++                           .++.
T Consensus       181 ~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~-~~~~~~~~e~~~~~~~~---------------------------~~~~  232 (432)
T PRK10406        181 VVLQQTLEDAELREWGWRIPFALGAVLAVVA-LWLRRQLDETSQQETRA---------------------------LKEA  232 (432)
T ss_pred             HHHHHhCCHHHHhccchHHHHHHHHHHHHHH-HHHHhcCCCCchHHHhh---------------------------hccc
Confidence            2            358999999988776554 33334556654321110                           0001


Q ss_pred             chhHHHHHHhhcchhhHHHHHHHHH-HHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 013312          233 PSIRDLICLLRSSVTLSQAAVVAFF-SGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILG  311 (445)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~  311 (445)
                      .++++    ++++++.+...+...+ .....+....++|.|+++.+|++..+.+.......+...+++ .+.|+++||++
T Consensus       233 ~~~~~----l~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~-~~~G~l~Dr~g  307 (432)
T PRK10406        233 GSLKG----LWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQ-PLIGALSDKIG  307 (432)
T ss_pred             ccHHH----HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcC
Confidence            12333    3345555544443333 355667788899999988889999898888888888888887 66699999999


Q ss_pred             chhHHHHHHHHHHHHHHHHH--h--cCCchhHHHHHH-HHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHH-HHH
Q 013312          312 EAKLLSLGLFAACINMFICS--I--SWSAWVPYATTA-FSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSF-ANI  385 (445)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-g~~  385 (445)
                      ||+.+..+..+..+....+.  .  .++.+....... .....+...+....+.+|.+|++.|+++.|+.+...++ .+.
T Consensus       308 rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~  387 (432)
T PRK10406        308 RRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGG  387 (432)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHh
Confidence            99877666554333322111  1  122222222222 22333334456677889999999999999999988765 344


Q ss_pred             HHHHHHHHHHHhhhcCCCCcccchhHHHHHHHHHHHHHHHHHhccC
Q 013312          386 VSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMSH  431 (445)
Q Consensus       386 i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (445)
                      ..|.+.+.+ +..       +.....++..++..+++.+..+.+++
T Consensus       388 ~~p~~~~~l-~~~-------g~~~~~~~~~~~~~~i~~~~~~~l~~  425 (432)
T PRK10406        388 SAEYVALSL-KSI-------GMETAFFWYVTLMAVVAFLVSLMLHR  425 (432)
T ss_pred             HHHHHHHHH-HHh-------CCCcHHHHHHHHHHHHHHHHHHHhhh
Confidence            577777744 544       21222344455555555555555443

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=100.00  E-value=2.9e-34  Score=269.36  Aligned_cols=347  Identities=12%  Similarity=0.118  Sum_probs=259.7

Q ss_pred             hhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHH
Q 013312            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP   87 (445)
Q Consensus         8 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~   87 (445)
                      |.++.++++.++..++..+.....+.+.+|.        +.+..+.+++.+.+.+++.++.++.|+++||+|||++++.+
T Consensus         3 ~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~   74 (393)
T PRK11195          3 KGFYAIMAAQFFSALADNALLFAAIALLKEL--------HYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIA   74 (393)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--------CCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHH
Confidence            3566788889999988777766666665442        44556789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhhhhh
Q 013312           88 LTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL  167 (445)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~  167 (445)
                      .++.+++.+.+.++.+   .   ++.|+++|+ +.+...|+..+++.|++|+|+|++++++.+....+|.++||.+++.+
T Consensus        75 ~~~~~~~~~~~~~~~~---~---~~~r~l~G~-~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l  147 (393)
T PRK11195         75 NGIKLLGCLLMLFGIH---P---LLAYGLVGI-GAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGAL  147 (393)
T ss_pred             HHHHHHHHHHHHHHHH---H---HHHHHHHHH-HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999888887766   4   678999999 88999999999999999999999999999999999999999999875


Q ss_pred             ---chhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCccccchhhhcccccCCCCCCcccccccccchhHHHHHHhhc
Q 013312          168 ---STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRS  244 (445)
Q Consensus       168 ---~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (445)
                         .|+..+.+.+...++. .+..+.+||++++++++++                       +..+.....++..+.+++
T Consensus       148 ~~~~~~~~~~i~~~~~~~~-~~~~~~l~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~l~~  203 (393)
T PRK11195        148 ADPHAEAALAVCALIYLLA-ALFNLFIPRLGARRPGQSW-----------------------NPIALLRDFFHACRVLWR  203 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHhcCCCCcccccccCC-----------------------CHHHHHHHHHHHHHHHHh
Confidence               4555665555443333 3344667775432211100                       000000111222334556


Q ss_pred             chhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHH
Q 013312          245 SVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAAC  324 (445)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  324 (445)
                      +|.+........+............|.|+++.+|.++.+.|+.....+++.++++ +..+++.||.++++.+..+.. .+
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~-~~~~~l~~~~~~~~~~~~g~~-~~  281 (393)
T PRK11195        204 DKLGRFSLAGTTLFWGAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGA-GAAARLVTLETVLRVLPAGIL-MG  281 (393)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHH-HHHHHHhcCCcccchHHHHHH-HH
Confidence            6666555544444445555566777888988899999999999999999999998 777899999888887777753 33


Q ss_pred             HHHHHHHhcCCchhHHH-HHHHHhhhhhhhhhHHHHHhcccCCcc-chhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013312          325 INMFICSISWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNE-QGKAQGCISGISSFANIVSPLIFSPLT  395 (445)
Q Consensus       325 ~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~-~g~~~g~~~~~~~~g~~i~~~~~g~l~  395 (445)
                      +....+.+.++.+.... ..+.|++.+...+..++..++..|++. +|++.++.+..++++..++..+.+.+.
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~  354 (393)
T PRK11195        282 LVVLLMALQHSLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLV  354 (393)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            43444444455443333 356788888888888888888766554 799999999999999999999998663

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=100.00  E-value=2.9e-34  Score=265.43  Aligned_cols=352  Identities=13%  Similarity=0.047  Sum_probs=256.7

Q ss_pred             HHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHHHHHHHHHHHHH
Q 013312           19 LWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAIL   98 (445)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~   98 (445)
                      .+......+.|.+|.+.+|        ++++..+.|++.+.+.+++.+++++.|+++||+|||+++..+......+....
T Consensus         2 ~~~~~~~~~~~~lp~i~~~--------~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~   73 (368)
T TIGR00903         2 ASQAIWVTFSPVLSLVAED--------IDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRL   73 (368)
T ss_pred             hhhHHHHHHHhhHHHHHHH--------hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHH
Confidence            3456677788999999754        47777899999999999999999999999999999998776655555544333


Q ss_pred             HhhcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhhhhh----chhhHHH
Q 013312           99 AYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----STTSAFQ  174 (445)
Q Consensus        99 ~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~----~w~~~f~  174 (445)
                      ...++   ++.+++.|+++|+ +.+.. +.....++|++|+++|++++++.+.+..+|.++++.++..+    +||+.|+
T Consensus        74 ~~~~~---~~~l~~~R~l~G~-g~~~~-~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~  148 (368)
T TIGR00903        74 LDPFN---YEWLLACQLLAAL-GQPFL-LNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLII  148 (368)
T ss_pred             HHhcc---HHHHHHHHHHHHh-HhHHH-HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHH
Confidence            33367   9999999999999 77764 56667779999999999999999999999999998877764    9999999


Q ss_pred             HHHHHHHHHHHHHHHhccCCCCCCCCcCCccccchhhhcccccCCCCCCcccccccccchhHHHHHHhhcchhhHHHHHH
Q 013312          175 AATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVV  254 (445)
Q Consensus       175 ~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (445)
                      +.++++++..++.++.+||+|++++++                       .+. .   +..++ ++.+.++|.++...+.
T Consensus       149 ~~~~l~~~~~~~~~~~lp~~p~~~~~~-----------------------~~~-~---~~~~~-~~~ll~~~~~~~~~~~  200 (368)
T TIGR00903       149 PIAAVAAAGIILVLAALPALPFQAAEG-----------------------FGF-K---DAVKE-FGALAGRKDLWIIGAI  200 (368)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCCCCCC-----------------------cch-H---HHHHH-HHHHHcChhHHHHHHH
Confidence            988888887777778899876542210                       000 0   01112 2335677888888888


Q ss_pred             HHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcc---hhH-HHHHHHHHHHHHHHH
Q 013312          255 AFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGE---AKL-LSLGLFAACINMFIC  330 (445)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~-~~~~~~~~~~~~~~~  330 (445)
                      .++.....+.+.+|+|.|+++ .|++.. .+.......+.+.++.    ++++||..|   |+. ......+.++....+
T Consensus       201 ~~~~~~~~~~~~~wlp~~L~~-~g~s~~-~~~~~~l~~~~g~~g~----~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~  274 (368)
T TIGR00903       201 LGFGVALFDNLAIWLEAALRP-AGLEDI-AGDAVALAILAGLIGV----AVIPDRVARAGLRSIYIRAAALLIAAFFLAL  274 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-CCCChH-HHHHHHHHHHHHHHHH----HHhhHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            999888999999999999977 688865 5666666666665554    566776643   333 222344444444444


Q ss_pred             HhcCCchhHHH-HHHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccch
Q 013312          331 SISWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPG  409 (445)
Q Consensus       331 ~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~  409 (445)
                      ....+.+.... ..+.+++.....+..+++.+|.+|++.||++.|+.+..+++++..+|.+.+.+..         +...
T Consensus       275 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~---------~~~~  345 (368)
T TIGR00903       275 AFELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS---------SAEA  345 (368)
T ss_pred             HHccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc---------CHHH
Confidence            44444443332 3445566666777788999999999999999999999999999999999988773         1112


Q ss_pred             hHHHHHHHHHHHHHHHHH
Q 013312          410 FSIMCIGLASMVAFIQSL  427 (445)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~  427 (445)
                       .|.+.+...+++.+...
T Consensus       346 -~f~~~~~~~~i~~~~~~  362 (368)
T TIGR00903       346 -YFTFLAILITIAFAIAL  362 (368)
T ss_pred             -HHHHHHHHHHHHHHHHH
Confidence             24444555555555544

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK12307 putative sialic acid transporter; Provisional

Probab=100.00  E-value=2.6e-34  Score=274.10  Aligned_cols=358  Identities=13%  Similarity=0.113  Sum_probs=260.2

Q ss_pred             HhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHH
Q 013312            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (445)
Q Consensus         7 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~   86 (445)
                      ++.+...++..+...++.....+..|.+.+|        ++.+..+.+++.+++.++..+++++.|+++||+|||+++..
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--------~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~   88 (426)
T PRK12307         17 KNALFSAWLGYVFDGFDFMLIFYIMYLIKAD--------LGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMW   88 (426)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH--------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHH
Confidence            4456667777788888888888888887644        46667788999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhhhh
Q 013312           87 PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF  166 (445)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~  166 (445)
                      +.++.+++.++++++++   ++.+++.|+++|+ +.+...+....++.|++|+|+|+++.++...+..+|.++++.+.+.
T Consensus        89 ~~~~~~~~~~~~~~~~~---~~~l~~~r~l~G~-g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~  164 (426)
T PRK12307         89 SIVAYSVGTGLSGLASG---VIMLTLSRFIVGM-GMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPS  164 (426)
T ss_pred             HHHHHHHHHHHHHHHhH---HHHHHHHHHHHHH-HHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHH
Confidence            99999999999999999   9999999999999 8888889999999999999999999999999999999998877654


Q ss_pred             ----hchhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCccccchhhhcccccCCCCCCcccccccccchhHHHHHHh
Q 013312          167 ----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLL  242 (445)
Q Consensus       167 ----~~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (445)
                          .+||+.|++.....+ ..+......||+++.++++.+         +   ++   ++ .+...   +..+...+..
T Consensus       165 l~~~~~w~~~f~i~~~~~~-~~~~~~~~~p~~~~~~~~~~~---------~---~~---~~-~~~~~---~~~~~~~~~~  224 (426)
T PRK12307        165 FAEAYGWRAAFFVGLLPVL-LVIYIRARAPESKEWEEAKLS---------G---KG---KH-SQSAW---SVFSLSMKGL  224 (426)
T ss_pred             HcccCCHHHHHHHHHHHHH-HHHHHHHHCCCChHHHHhhhh---------c---cc---cc-cccch---hhhhHHHHHH
Confidence                589999988654332 222222233443221111000         0   00   00 00000   0011112223


Q ss_pred             hcchhhHHHHHHH---HHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHH
Q 013312          243 RSSVTLSQAAVVA---FFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLG  319 (445)
Q Consensus       243 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  319 (445)
                      .+++.++......   +...........++|.|+++ .|+++.+.+...+...++.+++. +..+++.||++||+.+..+
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~-~~~g~l~dr~~~~~~~~~~  302 (426)
T PRK12307        225 FNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGN-IVWGLCADRIGLKKTFSIG  302 (426)
T ss_pred             HhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccHHHHHHH
Confidence            4455544333222   22222333456788999987 69999999999999999999988 7789999999999988888


Q ss_pred             HHHHHHHHHHHHhcC-CchhHHHHHHHHhh--hhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013312          320 LFAACINMFICSISW-SAWVPYATTAFSVL--VVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTA  396 (445)
Q Consensus       320 ~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~  396 (445)
                      ..+..+..+.+...+ +........+++.+  .....+....++.|.+|++.||+++|+.+...++++.++|.+.|++.+
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~  382 (426)
T PRK12307        303 LLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGI  382 (426)
T ss_pred             HHHHHHHHHHHHHHccccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHH
Confidence            777666555444333 22222222333332  223345566778999999999999999999999999999999999998


Q ss_pred             hh
Q 013312          397 LF  398 (445)
Q Consensus       397 ~~  398 (445)
                      +.
T Consensus       383 ~~  384 (426)
T PRK12307        383 TM  384 (426)
T ss_pred             cc
Confidence            76

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=100.00  E-value=9e-34  Score=271.36  Aligned_cols=363  Identities=13%  Similarity=0.099  Sum_probs=252.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHHHHHHHHHHHHHHhhcCc-chhHHHHHHHHHhhhccchhH
Q 013312           47 SLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSI-SFFYAYYALRTLTAMVCEGSI  125 (445)
Q Consensus        47 ~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~r~l~G~~~~g~~  125 (445)
                      +.+..+.|+..+.+.++..+++++.|+++||+|||++++.+.++.+++.+.+++.+.. ..++.+++.|++.|+ +.+..
T Consensus        59 g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi-~~g~~  137 (452)
T PRK11273         59 GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGW-FQGMG  137 (452)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHH-HHhcc
Confidence            6777889999999999999999999999999999999999999999999988876410 017888999999999 77877


Q ss_pred             HHHHHHHHhcCCCccchhhHHHHHHHHHhhhh-hhhhhhhh----hhchhhHHHHHHHHHHHHHHHHHHhccCCCCCCCC
Q 013312          126 NCLALAYVADNISERQRASAFGILLGVLSASF-VCGTLAAR----FLSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDD  200 (445)
Q Consensus       126 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~-~~g~~l~~----~~~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~  200 (445)
                      .|.....+.|++|+++|++++++.+.+.++|. ..+|+++.    ..+||+.|++.+++.++..++..+++||++++...
T Consensus       138 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~  217 (452)
T PRK11273        138 WPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDTPQSCGL  217 (452)
T ss_pred             chHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCC
Confidence            78888889999999999999999999998886 44565432    23899999998888777767777778887654221


Q ss_pred             cCCccccchhhhcccccCCCCCCcccccccccchhHHH-HHHhhcchhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCC
Q 013312          201 DDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDL-ICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHF  279 (445)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  279 (445)
                      +++.+     .+++..++.+.     ++ +++.+.++. .+..++++.++...+..++.....+....++|.|+++..|+
T Consensus       218 ~~~~~-----~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~  286 (452)
T PRK11273        218 PPIEE-----YKNDYPDDYNE-----KH-EQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHF  286 (452)
T ss_pred             CChhh-----hhhcccccccc-----cc-CCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            11100     00000000000     00 011122332 23356778888877777777777777888999999998899


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHhhhhh--cchhHH-HHHHHHHHHHHHHHHhc--CCchhHHH-HHHHHhhhhhhh
Q 013312          280 NKNQFADLMLIAGLAGTISQLLFMPLLAPIL--GEAKLL-SLGLFAACINMFICSIS--WSAWVPYA-TTAFSVLVVFAT  353 (445)
Q Consensus       280 ~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~g~~~~~~~  353 (445)
                      +..+.+.......++.+++. ++.|+++||+  +||+.. .....+..++.+.+...  .+.+.... ....+.......
T Consensus       287 s~~~~~~~~~~~~~~~~~g~-~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  365 (452)
T PRK11273        287 ALDKSSWAYFLYEYAGIPGT-LLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMACMIVIGFLIYGPV  365 (452)
T ss_pred             CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHhHH
Confidence            99999988888888888888 7889999998  444332 22223333333332222  22222222 233333322223


Q ss_pred             hhHHHHHhcccCCccchhHHHHHHHHHHHHHHH-HHHHHHHHHHhhhcCCCCcccchhHHHHHHHHHHHHHHHHHhcc
Q 013312          354 PSFRSIVSKQVGPNEQGKAQGCISGISSFANIV-SPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMS  430 (445)
Q Consensus       354 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (445)
                      .....+..|.+|++.||++.|+.+...++|+.+ +|.+.|.+.|+.       ++.. .|.+.+.+++++++......
T Consensus       366 ~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~-------g~~~-~f~~~~~~~~~~~~~~~~~~  435 (452)
T PRK11273        366 MLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF-------GWDG-GFMVMIGGSILAVILLIVVM  435 (452)
T ss_pred             HHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHh-------cchH-HHHHHHHHHHHHHHHHHHHh
Confidence            334456779999999999999999999998765 799999999987       3333 34455555555555554433

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=100.00  E-value=9.9e-34  Score=268.06  Aligned_cols=343  Identities=13%  Similarity=0.077  Sum_probs=267.2

Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHHHHHHHH
Q 013312           14 FVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSII   93 (445)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~   93 (445)
                      .+..++..++..++.|.+|.+.+|        ++.+..+.++..+.+.+++.+++++.|+++||+|||+++..+....++
T Consensus        19 ~l~~~~~~~~~~~~~~~~~~~~~~--------~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~   90 (406)
T PRK15402         19 VLFEFATYIANDMIQPGMLAVVED--------FNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFIL   90 (406)
T ss_pred             HHHHHHHHhhhhhHhcchHHHHHH--------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence            344455566788888999988654        466667889999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhhhh----hch
Q 013312           94 PLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF----LST  169 (445)
Q Consensus        94 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~----~~w  169 (445)
                      +.+.+.++++   ++.+++.|+++|+ +.+...+...+++.|.+|+++|.++.++......+|..+||.+++.    .+|
T Consensus        91 ~~~~~~~~~~---~~~l~~~~~l~G~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w  166 (406)
T PRK15402         91 TCLAILLAQS---IEQFTLLRFLQGI-GLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPW  166 (406)
T ss_pred             HHHHHHHHcc---HHHHHHHHHHHHh-HhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCc
Confidence            9999999999   8999999999999 8788888899999999999999999999988888888888888765    489


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCccccchhhhcccccCCCCCCcccccccccchhHHHHHHhhcchhhH
Q 013312          170 TSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLS  249 (445)
Q Consensus       170 ~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (445)
                      |+.|++.+++.++..+...+..||++++++++                            .+..+..+..+..+++|.++
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~  218 (406)
T PRK15402        167 RGMFVLFAALAALSFFGLWRAMPETAGRVGEK----------------------------LSLKELGRDYKLVLKNRRFV  218 (406)
T ss_pred             cHHHHHHHHHHHHHHHHHHHhCCCCCcccccc----------------------------ccHHHHHHHHHHHHcCcHHH
Confidence            99999988887777666556667654321110                            00011222234456777777


Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHH
Q 013312          250 QAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFI  329 (445)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  329 (445)
                      ...+..++..........+.|.|+++.+|+++.+.+.......++..++. +..+++.||+++|+.+..+..+..++...
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~-~~~g~l~~r~~~~~~~~~~~~~~~~g~~~  297 (406)
T PRK15402        219 AGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGN-LTLARLTSRRPLRSLIRMGLWPMVAGLLL  297 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            66666656655555666778999888889999999988877777777877 77899999999999988888877777666


Q ss_pred             HHhcC-----CchhHHH-HHHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013312          330 CSISW-----SAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALF  398 (445)
Q Consensus       330 ~~~~~-----~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~  398 (445)
                      +....     +.+.... ..+.+++.+...+......... +++++|++.+..+..+.++..+|+.+.+.+++..
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~  371 (406)
T PRK15402        298 AALATVISSHAYLWLTAGLSLYAFGIGLANAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGG  371 (406)
T ss_pred             HHHHHHcccccHHHHHHHHHHHHHHHHHHhhhHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence            55422     2222222 4667777777777766665443 4589999999999999999999999999988764

>PRK10504 putative transporter; Provisional

Probab=100.00  E-value=1.4e-33  Score=272.34  Aligned_cols=376  Identities=13%  Similarity=0.072  Sum_probs=286.6

Q ss_pred             HhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHH
Q 013312            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (445)
Q Consensus         7 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~   86 (445)
                      ++.++.+.+..++..++.....+.+|.+.+|        ++.+..+.|++.+.+.++..++.++.|+++||+|||++++.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--------~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~   80 (471)
T PRK10504          9 RWQLWIVAFGFFMQSLDTTIVNTALPSMAQS--------LGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFT   80 (471)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH--------hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHH
Confidence            4466778888888889999999999999754        46667788999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhhhh
Q 013312           87 PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF  166 (445)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~  166 (445)
                      +..+.+++.+.+.++++   ++.+++.|+++|+ +.+...|...+++.|++|+++|+++.+..+...++|..+||.+++.
T Consensus        81 ~~~~~~~~~~~~~~~~~---~~~l~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~  156 (471)
T PRK10504         81 AIVLFTLGSLFCALSGT---LNELLLARVLQGV-GGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGL  156 (471)
T ss_pred             HHHHHHHHHHHHHHhCC---HHHHHHHHHHHHh-hhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            99999999999999988   8999999999999 8888889999999999999999999999999999999999988876


Q ss_pred             ----hchhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCccccchhh---------hcccccCCCCCCc---------
Q 013312          167 ----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEE---------TEGVNQNESNSPV---------  224 (445)
Q Consensus       167 ----~~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~---------  224 (445)
                          .+||+.|++......+..+......|+.+.+..+ .|........         .++.+........         
T Consensus       157 l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (471)
T PRK10504        157 LVEYASWHWIFLINIPVGIIGAIATLMLMPNYTMQTRR-FDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGV  235 (471)
T ss_pred             HHhhccHHHHHHHHHHHHHHHHHHHHHhCCCccccCCC-CChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHH
Confidence                4899999998887776666665555654332221 1111100000         0000000000000         


Q ss_pred             ------ccccccccchhHHHHHHhhcchhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHH
Q 013312          225 ------KIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTIS  298 (445)
Q Consensus       225 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~  298 (445)
                            ..++.+..++..+ .+ ++++|.+...+...++..........+.|.|++...|.++.+.++......++..++
T Consensus       236 ~~~~~~~~~~~~~~~~~~~-~~-l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~  313 (471)
T PRK10504        236 VALLLYLLHARNNNRALFS-LK-LFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGM  313 (471)
T ss_pred             HHHHHHHHHHhcCCCCccC-HH-HhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence                  0000000011111 11 456777777777777777777777788899998878999999999888888888777


Q ss_pred             HHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHhcC-Cch--hHHH-HHHHHhhhhhhhhhHHHHHhcccCCccchhHHH
Q 013312          299 QLLFMPLLAPILGEAKLLSLGLFAACINMFICSISW-SAW--VPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQG  374 (445)
Q Consensus       299 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g  374 (445)
                      . .+.+++.||+++|+.+..+..+..+...++.+.. +.+  .... ..+.|++.+...+..+....+.+|++++|+++|
T Consensus       314 ~-~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~  392 (471)
T PRK10504        314 K-RIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNS  392 (471)
T ss_pred             H-HHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHH
Confidence            6 7779999999999999888887777766555532 222  2222 345567788888888899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh
Q 013312          375 CISGISSFANIVSPLIFSPLTALF  398 (445)
Q Consensus       375 ~~~~~~~~g~~i~~~~~g~l~~~~  398 (445)
                      +.++...+|..+|+.+.|.+.+..
T Consensus       393 ~~~~~~~~g~~ig~~i~g~ll~~~  416 (471)
T PRK10504        393 LLSMIMQLSMSIGVTIAGLLLGLF  416 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999876

>PRK12382 putative transporter; Provisional

Probab=100.00  E-value=8.6e-34  Score=267.28  Aligned_cols=364  Identities=15%  Similarity=0.171  Sum_probs=268.4

Q ss_pred             hhHhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHh
Q 013312            5 KEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAML   84 (445)
Q Consensus         5 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l   84 (445)
                      ++++.++.+.+..++..++.++..|.+|.+.+       ++++.+..+.|++.+++.++..+++++.|+++||+||||++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~-------~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l   84 (392)
T PRK12382         12 SANFSLFRIAFAVFLTYMTVGLPLPVIPLFVH-------HDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSA   84 (392)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHhhhhhHHHH-------HhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHH
Confidence            34667888888899999999999999998875       34467778999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHH---h-----hcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhh
Q 013312           85 TLPLTLSIIPLAILA---Y-----RRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSAS  156 (445)
Q Consensus        85 ~~~~~~~~~~~~~~~---~-----~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g  156 (445)
                      ..+.+...++.+.+.   .     .++   ++.+++.|+++|+ +.+...+...+++.|+.|+|+|++++++.+.+...|
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~r~l~G~-~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g  160 (392)
T PRK12382         85 LQGMLACGLAGLAYLLAAILPVSAPFK---FALLVVGRLILGF-GESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGA  160 (392)
T ss_pred             HHHHHHHHHHHHHHHhhhccccchhHH---HHHHHHHHHHHHH-HHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHH
Confidence            999887776654332   2     234   8889999999999 888888889999999999999999999999999999


Q ss_pred             hhhhhhhhhh----hchhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCccccchhhhcccccCCCCCCccccccccc
Q 013312          157 FVCGTLAARF----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKI  232 (445)
Q Consensus       157 ~~~g~~l~~~----~~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (445)
                      ..+||.+++.    .+||+.+.+..+..++.... ....||.++++  +                             ++
T Consensus       161 ~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~-----------------------------~~  208 (392)
T PRK12382        161 LAAGAPLGLLLHSHFGFAALALTTMVLPLLAWAF-NGTVRKVPAHA--G-----------------------------ER  208 (392)
T ss_pred             HHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHH-HHhccCCCCCc--c-----------------------------cC
Confidence            9999888765    48888776655443322211 11222211100  0                             00


Q ss_pred             chhHHHHHHhhcchhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 013312          233 PSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGE  312 (445)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~  312 (445)
                      ++.++..+.+++ +.     +..++..........+.|.|+++ .|++.  .+......+++.+++. +..+++.||+++
T Consensus       209 ~~~~~~~~~~~~-~~-----~~~~l~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~-~~~g~l~~r~g~  278 (392)
T PRK12382        209 PSLWSVVGLIWK-PG-----LGLALQGVGFAVIGTFVSLYFAS-KGWAM--AGFTLTAFGGAFVLMR-VLFGWMPDRFGG  278 (392)
T ss_pred             chHHHHHHHHHH-hH-----HHHHHHHHHHhHHHHHHHHHHHh-cCCch--hHHHHHHHHHHHHHHH-HHHHHHHHhcCC
Confidence            012222222221 11     11222334455566778888877 46654  4555666777777777 777999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHhcCCchhHHH-HHHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHH
Q 013312          313 AKLLSLGLFAACINMFICSISWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIF  391 (445)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~  391 (445)
                      |+.+..+..+..++.+.+...++.+.... ..+.+++.+...+...+...|..|+++||++.|+.+....+|..++|.+.
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~  358 (392)
T PRK12382        279 VKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLA  358 (392)
T ss_pred             CeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99988888888888777777666554444 36667888878888888889999999999999999999999999999999


Q ss_pred             HHHHHhhhcCCCCcccchhHHHHHHHHHHHHHHHHHhc
Q 013312          392 SPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMM  429 (445)
Q Consensus       392 g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (445)
                      |.+.|+.       ++.. .+.+.+.+.+++....+..
T Consensus       359 g~l~~~~-------g~~~-~~~~~~~~~~~~~~~~~~~  388 (392)
T PRK12382        359 GMLATSF-------GYPS-VFLAGAISAVLGIIVTILS  388 (392)
T ss_pred             HHHHHHh-------CchH-HHHHHHHHHHHHHHHHHhh
Confidence            9999986       3333 3555666666666655544

>TIGR00899 2A0120 sugar efflux transporter

Probab=100.00  E-value=9e-34  Score=265.93  Aligned_cols=363  Identities=14%  Similarity=0.122  Sum_probs=271.6

Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHH-HHHHHH
Q 013312           14 FVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL-PLTLSI   92 (445)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~-~~~~~~   92 (445)
                      .+..++..++.++..|.+|.+.+       ++++.+..+.|++.+++.+...+.+++.|+++||+||||.++. +.....
T Consensus         3 ~~~~~~~~~~~~~~~~~l~~~l~-------~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~   75 (375)
T TIGR00899         3 LLVAFLTGIAGALQFPTLSLFLS-------EEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAA   75 (375)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHH-------cccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence            45578888999999999999875       3456777889999999999999999999999999999887654 566667


Q ss_pred             HHHHHHHhhcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhH--HHHHHHHHhhhhhhhhhhhhh----
Q 013312           93 IPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASA--FGILLGVLSASFVCGTLAARF----  166 (445)
Q Consensus        93 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~--~~~~~~~~~~g~~~g~~l~~~----  166 (445)
                      ++.++++++++   ++.+++.|++.|. ..+...|...++..|+.|+++|++.  .+......++|..+||.+++.    
T Consensus        76 ~~~~~~~~~~~---~~~l~~~~~~~g~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~  151 (375)
T TIGR00899        76 LACLLFAWNRN---YFLLLVLGVLLSS-FASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALG  151 (375)
T ss_pred             HHHHHHHhcch---HHHHHHHHHHHHh-hhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHh
Confidence            77788889998   8889999999988 6677788889999999887777654  577777888898888888765    


Q ss_pred             hchhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCccccchhhhcccccCCCCCCcccccccccchhHHHHHHhhcch
Q 013312          167 LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSV  246 (445)
Q Consensus       167 ~~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (445)
                      .+||+.|++.+++.++..+..++.+||+++++++++                            +..+.++    ..++|
T Consensus       152 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~----~~~~~  199 (375)
T TIGR00899       152 FGFTVMFLTAALAFVLCGVLVWLFLPSYPRGAPGAL----------------------------TRLEVRG----LLASR  199 (375)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHhCCCcccCccccc----------------------------Ccchhhh----hhcCc
Confidence            489999999998877776666677887654321110                            0001111    23344


Q ss_pred             hhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHH
Q 013312          247 TLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACIN  326 (445)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  326 (445)
                      .++......++..........+.|.|+++.+|.++.+.+...........++. +..+++.||+++|+.+..+.....+.
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~-~~~g~l~~r~g~~~~~~~~~~~~~~~  278 (375)
T TIGR00899       200 DTRLLFVACTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFM-LLAGYLIKRFGKRRLMLLAALAGVAF  278 (375)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH-HhHHHHHHHhcchhHHHHHHHHHHHH
Confidence            45444444444444445556778999988889999999988877776776766 77799999999999888777766655


Q ss_pred             HHHHHhcCCchhHHHH-HHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCc
Q 013312          327 MFICSISWSAWVPYAT-TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPF  405 (445)
Q Consensus       327 ~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~  405 (445)
                      ...+...++.+..... .+.+++.+...+....+..|..|+ ++++++|+.+...++|..++|.+.|.+.+..       
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~-------  350 (375)
T TIGR00899       279 YTGLAADNSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERW-------  350 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------
Confidence            5555555555544443 556777777788888888888874 5679999999999999999999999999875       


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHhc
Q 013312          406 NFPGFSIMCIGLASMVAFIQSLMM  429 (445)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~~~~  429 (445)
                      ++.. .+.+.+++.+++.+....+
T Consensus       351 g~~~-~~~~~~~~~~~~~~~~~~~  373 (375)
T TIGR00899       351 SYHA-VYWFAIVMLIVALFCLLLI  373 (375)
T ss_pred             cchh-HHHHHHHHHHHHHHHHhee
Confidence            3322 3555566666666655544

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=100.00  E-value=6.6e-35  Score=282.45  Aligned_cols=411  Identities=14%  Similarity=0.111  Sum_probs=272.8

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHHH
Q 013312            9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL   88 (445)
Q Consensus         9 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~   88 (445)
                      ......++.+...++...+.+..|.+.++...+..++.+.+..+.|++.+++.++..++++++|+++||+|||++++.+.
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~   92 (479)
T PRK10077         13 ITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAA   92 (479)
T ss_pred             HHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            34445566677778888888888888777654445566888899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhh---------cCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhh
Q 013312           89 TLSIIPLAILAYR---------RSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVC  159 (445)
Q Consensus        89 ~~~~~~~~~~~~~---------~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~  159 (445)
                      .+..++.+.++++         ++.+.++.+++.|+++|+ +.|...+...++++|++|+++|++++++.+....+|..+
T Consensus        93 ~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~-~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~  171 (479)
T PRK10077         93 VLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGI-GVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLV  171 (479)
T ss_pred             HHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhh-hHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHH
Confidence            9999998887763         222225678899999999 889999999999999999999999999999999999988


Q ss_pred             hhhhhh------------hhchhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCccccchhhhcccccCCCCCCcccc
Q 013312          160 GTLAAR------------FLSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIP  227 (445)
Q Consensus       160 g~~l~~------------~~~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (445)
                      ++.++.            ..+||+.|++.+++.++..+ ..+.+||+|+...++++.++..+..++..+.+    +..  
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~-~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~----~~~--  244 (479)
T PRK10077        172 VYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLM-LLYFVPETPRYLMSRGKQEQAEGILRKIMGNT----LAT--  244 (479)
T ss_pred             HHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHH-HHHcCCCCcHHHHHcCCHHHHHHHHHHHcCCh----hHH--
Confidence            876653            24899999998877766544 45678988753221111111100000000000    000  


Q ss_pred             cccccchhHHHHHH-hhcchhhHH----HHHH-----HHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHH
Q 013312          228 VCKKIPSIRDLICL-LRSSVTLSQ----AAVV-----AFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTI  297 (445)
Q Consensus       228 ~~~~~~~~~~~~~~-~~~~~~~~~----~~~~-----~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~  297 (445)
                        +..++.++..+. ..+.+..+.    ....     .+...........+.|.+.++ .|.+....+......++..++
T Consensus       245 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~-~g~~~~~~~~~~~~~~~~~~i  321 (479)
T PRK10077        245 --QALQEIKHSLDHGRKTGGKLLMFGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKT-LGASTDIALLQTIIVGVINLT  321 (479)
T ss_pred             --HHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHH-cCCCCchHHHHHHHHHHHHHH
Confidence              000001111000 000011100    0110     111111122334455666665 788877777777778888888


Q ss_pred             HHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHhc---CCchhH--HHHHHHHhhhhh-hhhhHHHHHhcccCCccchh
Q 013312          298 SQLLFMPLLAPILGEAKLLSLGLFAACINMFICSIS---WSAWVP--YATTAFSVLVVF-ATPSFRSIVSKQVGPNEQGK  371 (445)
Q Consensus       298 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~  371 (445)
                      +. ++.+++.||+|||+.+..+..+.+++.+.+...   +..+..  ....+++.+.+. ..|..+.+++|.+|+++|++
T Consensus       322 ~~-~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~  400 (479)
T PRK10077        322 FT-VLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGK  400 (479)
T ss_pred             HH-HHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHH
Confidence            87 888999999999999999998888877666532   122211  222333444433 34778899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-CCcccchhHHHHHHHHHHHHHHHHHhccCCCC
Q 013312          372 AQGCISGISSFANIVSPLIFSPLTALFLSKG-APFNFPGFSIMCIGLASMVAFIQSLMMSHTPA  434 (445)
Q Consensus       372 ~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (445)
                      +.|+.+..++++..+++.+.+.+.+.  ++. ..++. ...+.+.+++.+++.+..+...++++
T Consensus       401 ~~g~~~~~~~~g~~~~~~~~p~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~e~~  461 (479)
T PRK10077        401 ALAIAVAAQWIANYFVSWTFPMMDKN--SWLVAHFHN-GFSYWIYGCMGVLAALFMWKFVPETK  461 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHhc--cchhhhccC-ccHHHHHHHHHHHHHHHHHhccccCC
Confidence            99999999999999998887765521  000 00022 22345555555555565555555544

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=100.00  E-value=3.1e-34  Score=269.23  Aligned_cols=349  Identities=15%  Similarity=0.107  Sum_probs=266.2

Q ss_pred             HHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHHHHHHHHHHHHHHhhcC
Q 013312           24 TMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRS  103 (445)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~  103 (445)
                      .....+..|.+.+        +++.+..+.|++.+++.++..+++++.|+++||+|||+++..+.++.+++.++++++++
T Consensus        19 ~~~~~~~~~~~~~--------~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~   90 (377)
T TIGR00890        19 VYTWTLLAPPLGR--------YFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADS   90 (377)
T ss_pred             HhhhhhHHHHHHH--------HhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHH
Confidence            4445667777754        44677789999999999999999999999999999999999999999999999999999


Q ss_pred             cchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhhhh----hchhhHHHHHHHH
Q 013312          104 ISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF----LSTTSAFQAATIV  179 (445)
Q Consensus       104 ~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~----~~w~~~f~~~~~~  179 (445)
                         ++.+++.|++.|+ +.+...+.....+.|++| |+|+++.++.....++|..+++.+.+.    .+||+.|++.+++
T Consensus        91 ---~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~  165 (377)
T TIGR00890        91 ---LAALYLTYGLASA-GVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGII  165 (377)
T ss_pred             ---HHHHHHHHHHHhH-HHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHH
Confidence               9999999999999 888777888888899887 689999999999999998765444433    4899999999988


Q ss_pred             HHHHHHHHHHhccCCCCCCCCcCCccccchhhhcccccCCCCCCcccccccccchhHHHHHHhhcchhhHHHHHHHHHHH
Q 013312          180 SMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSG  259 (445)
Q Consensus       180 ~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (445)
                      .++..+...+.+||++++++++++                +      . .++.   ++ .+...+++.++......++..
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~----------------~------~-~~~~---~~-~~~~~~~~~~~~~~~~~~~~~  218 (377)
T TIGR00890       166 FLLVIVLGAFLIGYPPGQLIKTNI----------------E------V-SVKD---YT-VWEMLRTPQFWVLYLSFFLNA  218 (377)
T ss_pred             HHHHHHHHHHheecCchhccccCc----------------c------c-chhh---hh-HHHHHcCccHHHHHHHHHHHh
Confidence            877776666666654432211100                0      0 0000   11 112345666666555555555


Q ss_pred             hhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHhcCCch--
Q 013312          260 LSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAW--  337 (445)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  337 (445)
                      ........+.+.|.++ +|.++.+.+.......+...++. +..+++.||++||+.+..+.....++.+.+.+.++..  
T Consensus       219 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (377)
T TIGR00890       219 VSGLLLIGLYKPYGQS-LGLSDGFLVLAVSISSIFNGGGR-PFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDV  296 (377)
T ss_pred             HHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhH
Confidence            5555556667777765 78998888999999999999988 8889999999999999888888888877766655332  


Q ss_pred             hHHH-HHHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccchhHHHHHH
Q 013312          338 VPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIG  416 (445)
Q Consensus       338 ~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~  416 (445)
                      .... ..+.+++.+...+...++..|.+|+++|+++.|+.+...++|..++|.+.|.+.++.       ++.. .+.+.+
T Consensus       297 ~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~-------g~~~-~f~~~~  368 (377)
T TIGR00890       297 LFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEI-------GFEY-TFIVTG  368 (377)
T ss_pred             HHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhh-------chhh-HHHHHH
Confidence            2222 345566666677777888999999999999999999999999999999999999876       3332 345555


Q ss_pred             HHHHHH
Q 013312          417 LASMVA  422 (445)
Q Consensus       417 ~~~~~~  422 (445)
                      ++.+++
T Consensus       369 ~~~~~~  374 (377)
T TIGR00890       369 AFALTS  374 (377)
T ss_pred             HHHHHh
Confidence            554443

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=100.00  E-value=4.1e-34  Score=277.50  Aligned_cols=374  Identities=11%  Similarity=0.084  Sum_probs=291.7

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHHH
Q 013312            9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL   88 (445)
Q Consensus         9 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~   88 (445)
                      .+..+.+..++..++..+..+.+|.+.++        ++.+..+.+++.+.+.++..++.++.|+++||+|||+++..+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--------~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~   74 (485)
T TIGR00711         3 LTIVLMLGTFMAVLDSTIVNVAIPTIAGD--------LGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLIST   74 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------cCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHH
Confidence            34566778888999999999999999754        3556677899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhhhh--
Q 013312           89 TLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF--  166 (445)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~--  166 (445)
                      ++.+++.++++++++   ++.+++.|+++|+ +.+...+...+++.|++|+++|++++++......+|..+||.+++.  
T Consensus        75 ~~~~~~~~~~~~~~~---~~~l~~~~~~~G~-~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  150 (485)
T TIGR00711        75 FAFTLGSLLCGVAPN---LELMIIFRVIQGF-GGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWII  150 (485)
T ss_pred             HHHHHHHHHHhCcCC---HHHHHHHHHHHHh-hhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhc
Confidence            999999999999999   9999999999999 8888889999999999999999999999999999999999988876  


Q ss_pred             --hchhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCccccch---------hhhcccccCCCCCCccc---------
Q 013312          167 --LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIIT---------EETEGVNQNESNSPVKI---------  226 (445)
Q Consensus       167 --~~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~---------  226 (445)
                        .+||+.|++.+.+.++..+...+..||++++++++.|..+...         ...++.+++++.++...         
T Consensus       151 ~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (485)
T TIGR00711       151 ENYHWRWIFLINVPIGIIVVVVAFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLV  230 (485)
T ss_pred             cCcCceehhhhhhHHHHHHHHHHHHHcCCccccccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHH
Confidence              4899999999888777777766777775443222222111000         00001111111111000         


Q ss_pred             -------ccccccchhHHHHHHhhcchhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHH
Q 013312          227 -------PVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQ  299 (445)
Q Consensus       227 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~  299 (445)
                             .+.+.+++..+ . ..+++|.++...+..++..+.......++|.|+++.+|+++.+.+.......++..++.
T Consensus       231 ~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~  308 (485)
T TIGR00711       231 AIIAFVVWELTDDNPLVD-L-RLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSS  308 (485)
T ss_pred             HHHHHHHHHHcCCCCccC-H-HHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence                   00011111111 1 13456677777777777777778888899999999899999999999999999999988


Q ss_pred             HHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHhc--C--CchhHHH-HHHHHhhhhhhhhhHHHHHhcccCCccchhHHH
Q 013312          300 LLFMPLLAPILGEAKLLSLGLFAACINMFICSIS--W--SAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQG  374 (445)
Q Consensus       300 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g  374 (445)
                       ++.+++.||+++|+.+..+..+..++...+.+.  +  +.+.... ..+.|++.+...+.......+..|++++|++.|
T Consensus       309 -~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~  387 (485)
T TIGR00711       309 -PIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSS  387 (485)
T ss_pred             -HHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHH
Confidence             788999999999999998888888887776631  2  2232333 466788888888777788888899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHh
Q 013312          375 CISGISSFANIVSPLIFSPLTAL  397 (445)
Q Consensus       375 ~~~~~~~~g~~i~~~~~g~l~~~  397 (445)
                      +.+..+.+|+.+|+.+.|.+.++
T Consensus       388 ~~~~~~~~g~~ig~~i~g~~~~~  410 (485)
T TIGR00711       388 LSNFTRQLGGSIGTALITTILTN  410 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999875

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK10054 putative transporter; Provisional

Probab=100.00  E-value=8.4e-34  Score=266.40  Aligned_cols=353  Identities=15%  Similarity=0.176  Sum_probs=277.8

Q ss_pred             CcchhhHhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCc
Q 013312            1 MGMEKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGR   80 (445)
Q Consensus         1 m~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Gr   80 (445)
                      |+.+. ||.++.+.+..++...+.+...|.+|.+.++       +++.+..+.|++.+.+.+...+++++.|+++||+||
T Consensus         1 ~~~~~-~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~-------~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~   72 (395)
T PRK10054          1 MNLSL-RRSTSALLASSLLLTIGRGATLPFMTIYLSR-------QYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDK   72 (395)
T ss_pred             CCCCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Confidence            54443 5567788888999999999999999999863       457777899999999999999999999999999999


Q ss_pred             hhHhHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhh
Q 013312           81 KAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCG  160 (445)
Q Consensus        81 r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g  160 (445)
                      |+++..+.+..+++.+...++++   ++.+++.|.+.|. +.+...+...++..|..|+++|++++++.+...++|..+|
T Consensus        73 k~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~ig  148 (395)
T PRK10054         73 KRYMLLAITAFASGFIAIPLVNN---VTLVVLFFALINC-AYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVG  148 (395)
T ss_pred             chhHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999   8888889999888 6677788899999999999999999999999999999999


Q ss_pred             hhhhhhh---chhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCccccchhhhcccccCCCCCCcccccccccchhHH
Q 013312          161 TLAARFL---STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRD  237 (445)
Q Consensus       161 ~~l~~~~---~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (445)
                      |.+++.+   +|+.+|++.+++.++..+...+.+||++++++++                       + +  +   . ++
T Consensus       149 p~l~~~l~~~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~-----------------------~-~--~---~-~~  198 (395)
T PRK10054        149 PPLGTLLVMQSINLPFWLAAICSAFPLVFIQIWVQRSEKAIATE-----------------------T-G--S---V-WS  198 (395)
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhccccccccc-----------------------h-h--h---h-hh
Confidence            9998874   8999999888877766555555566543321110                       0 0  0   0 11


Q ss_pred             HHHHhhcchhhHHHHHHHHHHHhhhhhhHHHHHHHHHhh--cCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhH
Q 013312          238 LICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQ--FHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKL  315 (445)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  315 (445)
                       .+...++|.++...+..++..+.......+.+.|..+.  .+.+....+.............+ ...+++.||.++|+.
T Consensus       199 -~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~  276 (395)
T PRK10054        199 -PSVLLQDKALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQ-YSVGRRLNAANIRPL  276 (395)
T ss_pred             -hhhhccCceehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeeh-hHHHHHHccCCchhH
Confidence             12245667777666666666666555556667776432  35566677777777777766666 666899999999999


Q ss_pred             HHHHHHHHHHHHHHHHhc-CCchhHH-HHHHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHH
Q 013312          316 LSLGLFAACINMFICSIS-WSAWVPY-ATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSP  393 (445)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~  393 (445)
                      +..+..+..++...+.+. ++.+... ...+++++.....|...+.+.+..|++.++++.+..+ ...+|..+||.++|.
T Consensus       277 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~  355 (395)
T PRK10054        277 MTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGV  355 (395)
T ss_pred             HHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHH
Confidence            888888888877766654 3444333 3466788888888888899999999999999999765 677999999999999


Q ss_pred             HHHhh
Q 013312          394 LTALF  398 (445)
Q Consensus       394 l~~~~  398 (445)
                      ++|+.
T Consensus       356 l~~~~  360 (395)
T PRK10054        356 ILTTL  360 (395)
T ss_pred             HHHHc
Confidence            99986

>PRK03699 putative transporter; Provisional

Probab=100.00  E-value=1.6e-33  Score=265.25  Aligned_cols=347  Identities=13%  Similarity=0.109  Sum_probs=269.5

Q ss_pred             hhHhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHh
Q 013312            5 KEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAML   84 (445)
Q Consensus         5 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l   84 (445)
                      +++|..+..++..++.........+.+|.+.++        ++.+..+.|++.+.+.++..+++++.|+++||+|||+++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~--------~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~   75 (394)
T PRK03699          4 NRIKLTWISFLSYALTGALVIVTGMVMGPIAEY--------FNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQL   75 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH--------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            445666777777888878788888888888644        466778899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhh
Q 013312           85 TLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAA  164 (445)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~  164 (445)
                      ..+..+.+++.++++++++   ++.+++.|+++|+ +.+...+...+++.|++|+++|+++++..+....+|..++|.+.
T Consensus        76 ~~~~~~~~i~~~l~~~~~~---~~~~~~~~~l~G~-~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~  151 (394)
T PRK03699         76 IFGFALMILAVAGLMFSHS---LALFSIAMFVLGV-VSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIA  151 (394)
T ss_pred             HHHHHHHHHHHHHHHHcch---HHHHHHHHHHHHH-hhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998   8999999999999 88888888999999999999999999998888888888888765


Q ss_pred             hh-----hchhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCccccchhhhcccccCCCCCCcccccccccchhHHHH
Q 013312          165 RF-----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLI  239 (445)
Q Consensus       165 ~~-----~~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (445)
                      +.     .+||+.|.+.+++.++..++.+ . ++.|+.+++++               +++    + +  ..    ++  
T Consensus       152 ~~l~~~~~gw~~~f~~~~~~~~~~~~~~~-~-~~~p~~~~~~~---------------~~~----~-~--~~----~~--  201 (394)
T PRK03699        152 AYLLARSIEWYWVYACIGLVYVAIFILTL-F-SEFPALGKHAP---------------KAD----K-P--VA----KE--  201 (394)
T ss_pred             HHHHhccccHHHHHHHHHHHHHHHHHHHH-h-cCCccccccCc---------------ccc----C-c--cc----cc--
Confidence            53     4899999988877665544332 2 22221111100               000    0 0  00    00  


Q ss_pred             HHhhcchhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHH
Q 013312          240 CLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLG  319 (445)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  319 (445)
                         ..++.++...+..++..........+.|.|+++.+|+|+.+.+.+.+...++..++. +..+++.||+++|+.+...
T Consensus       202 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~-~~~g~l~dr~~~~~~l~~~  277 (394)
T PRK03699        202 ---KWGIGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGM-WIFSFIVRFFDLQRILTVL  277 (394)
T ss_pred             ---cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHH-HHHHHHHHHhchhhHHHHH
Confidence               012344445555566666667788999999988899999999999999999999988 7889999999999988877


Q ss_pred             HHHHHHHHHHHHhcCCchhHH-HHHHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013312          320 LFAACINMFICSISWSAWVPY-ATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALF  398 (445)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~  398 (445)
                      ..+..+...++...++.+... ...+.|++.+..++...+...+..| +.+++..|......++|..++|.+.|++.|..
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~  356 (394)
T PRK03699        278 AGLALVLMYLFVNTDDPSHLLYAILGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHF  356 (394)
T ss_pred             HHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Confidence            777666666665555554333 3466677777778888888877776 55678889999999999999999999999976

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=100.00  E-value=7.9e-35  Score=270.69  Aligned_cols=343  Identities=24%  Similarity=0.336  Sum_probs=268.9

Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHHHHHHH
Q 013312           13 LFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSI   92 (445)
Q Consensus        13 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~   92 (445)
                      +++..++..++..+..+.+|.+..       ++++.+..+.|++.+++.++..+++++.|+++||+|||+++..+.++.+
T Consensus         1 L~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~   73 (352)
T PF07690_consen    1 LFLAFFLSGFGFSIISPALPLYLA-------EELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFA   73 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-HHH-------CCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHH-------HccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhh
Confidence            356778888999999999994433       4556777889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhhhhh----c
Q 013312           93 IPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----S  168 (445)
Q Consensus        93 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~----~  168 (445)
                      ++.++..++++   .+.+++.|++.|+ +.+...+...+++.|++|+++|++++++.+...++|..+||.+++.+    +
T Consensus        74 ~~~~~~~~~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~  149 (352)
T PF07690_consen   74 LGSLLLAFASN---FWLLLIARFLLGI-GSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFG  149 (352)
T ss_dssp             HHHHHHHHHCC---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCH
T ss_pred             hHHHHhhhhhh---HHHHhhhcccccc-ccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccc
Confidence            99777777777   7899999999999 88899999999999999999999999999999999999999998874    7


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCccccchhhhcccccCCCCCCcccccccccchhHHHHHHhhcchhh
Q 013312          169 TTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTL  248 (445)
Q Consensus       169 w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (445)
                      ||+.|++.+++.++..++....+++++++++++++.++.                     .+.++++++.++..+++|.+
T Consensus       150 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~  208 (352)
T PF07690_consen  150 WRWAFLISAILSLIAAILFILFLPEPPPPRERESPKESE---------------------SKKPKPLKPGFKSLFKNPVL  208 (352)
T ss_dssp             HCCHHHHHHHHHHHHHHHHHCCC---STTTT--SSTTTT-----------------------HHHCCCH-CTHHHHHHCC
T ss_pred             cccccccccchhhhhhhhHhhhhhhcccccccccccccc---------------------cccccccccccccccccchh
Confidence            999999999998887765556666655444332111000                     00111112223335566666


Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCc-hhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHH
Q 013312          249 SQAAVVAFFSGLSEGGMQASFLYFLKAQFHFN-KNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINM  327 (445)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  327 (445)
                      +......+...+.......+.|.|+++.+|++ ..+.+......++...++. ++.+++.||+++++..........+..
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~  287 (352)
T PF07690_consen  209 WILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGS-LLAGRLSDRFGRRRRLLIAILLLILGA  287 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence            64555555665677778899999988889999 7899999999999999987 778999999998877776666666665


Q ss_pred             HHHHhcCC----chhHHHHHHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHH
Q 013312          328 FICSISWS----AWVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSP  388 (445)
Q Consensus       328 ~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~  388 (445)
                      ..+.....    .+......+.|++.+...+...++..|.+|++++|++.|+.+...+++..++|
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  288 LGLLLLPFSSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHCCSHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            55544332    23333457778889999999999999999999999999999999999999987

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=100.00  E-value=7.3e-33  Score=260.73  Aligned_cols=344  Identities=16%  Similarity=0.149  Sum_probs=270.3

Q ss_pred             HhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHH
Q 013312            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (445)
Q Consensus         7 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~   86 (445)
                      ++....+....++...+..+..|.+|.+.+|        ++.+..+.|++.+++.++..+++++.|+++||+|||+++..
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--------~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~   75 (385)
T TIGR00710         4 KAFALLLGCLSILGPLGIDMYLPAFPEIAAD--------LSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLL   75 (385)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcccHHHHHHH--------hCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHH
Confidence            4455555555667778889999999988754        46667889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhhhh
Q 013312           87 PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF  166 (445)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~  166 (445)
                      +.++.+++.+.+.++++   ++.+++.|++.|+ +.+...+...+++.|++|+++|++++++.+....+|..+||.+++.
T Consensus        76 ~~~~~~~~~~~~~~~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~  151 (385)
T TIGR00710        76 GLFIFALSSLGLALSNN---IETLLVLRFVQAF-GASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGY  151 (385)
T ss_pred             HHHHHHHHHHHHHHHcc---HHHHHHHHHHHHc-chhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999   9999999999999 8888889999999999999999999999999999999999888876


Q ss_pred             ----hchhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCccccchhhhcccccCCCCCCcccccccccchhHHHHHHh
Q 013312          167 ----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLL  242 (445)
Q Consensus       167 ----~~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (445)
                          .+||+.|++.++..++..+...+..||++++++++                            +.++..++ .+..
T Consensus       152 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~-~~~~  202 (385)
T TIGR00710       152 ILVWLSWHAIFAFLSLAGILLSALIFFILPETLPYEARI----------------------------QISTYFET-FLLL  202 (385)
T ss_pred             HHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccC----------------------------CHHHHHHH-HHHH
Confidence                48999999888877776666666667654322110                            00011122 2334


Q ss_pred             hcchhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHH
Q 013312          243 RSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFA  322 (445)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  322 (445)
                      .++|.++...+...+..........+.|.++++.+|+++.+.+.+.....++.+++. ++.+++.||+++|+.+..+..+
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~-~~~g~l~~~~~~~~~~~~~~~~  281 (385)
T TIGR00710       203 LKSKMFWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGG-FLNGRFIKKWGAKSLLRMGLIL  281 (385)
T ss_pred             HcCchhHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCHHHHHHHHHHH
Confidence            566767666665555555666677788999988899999999999999999998888 7789999999999988888777


Q ss_pred             HHHHHHHHHhcC----Cch-hHHH-HHHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHH
Q 013312          323 ACINMFICSISW----SAW-VPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSP  393 (445)
Q Consensus       323 ~~~~~~~~~~~~----~~~-~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~  393 (445)
                      ..++...+....    +.+ .... ..+.+++.+...+.......|..| ++++++.++.+.....++.+.+.+.+.
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~  357 (385)
T TIGR00710       282 FAVSAVLLEITAILGLGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVSL  357 (385)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            776665554421    222 2222 355677788888888888888876 679999999999887766666666663

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=100.00  E-value=1.9e-33  Score=272.53  Aligned_cols=418  Identities=13%  Similarity=0.103  Sum_probs=271.1

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHHH
Q 013312            9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL   88 (445)
Q Consensus         9 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~   88 (445)
                      ......++.+.+.++........|.+..+..   .++.+.+..+.+++.+.+.++..+++++.|+++||+|||+++..+.
T Consensus        17 ~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~   93 (502)
T TIGR00887        17 AIVIAGVGFFTDSYDLFCISLVTKMLGYVYY---HGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMEL   93 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence            4455667778888888888888887765422   1223456677899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCcc---hhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhhh
Q 013312           89 TLSIIPLAILAYRRSIS---FFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAAR  165 (445)
Q Consensus        89 ~~~~~~~~~~~~~~~~~---~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~  165 (445)
                      ++..++.++++++++..   .++.+++.|+++|+ +.+...+....+++|++|+++|+++.++.+....+|..+|+.++.
T Consensus        94 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~-~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~  172 (502)
T TIGR00887        94 IIMIIATVASGLSPGSSPKSVMATLCFWRFWLGV-GIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVAL  172 (502)
T ss_pred             HHHHHHHHHHHHccCcccchHHHHHHHHHHHHHH-HHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999888876421   15789999999999 889989999999999999999999999999999999988876653


Q ss_pred             h---------------------------hchhhHHHHHHHHHHHHHHHHHHhccCCCCCC---CCcC-Cccccchhhhcc
Q 013312          166 F---------------------------LSTTSAFQAATIVSMLAAAYMRVFLKDDVPND---DDDD-LTRPIITEETEG  214 (445)
Q Consensus       166 ~---------------------------~~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~---~~~~-~~~~~~~~~~~~  214 (445)
                      .                           .+||++|.+.++..++.. +..+.+||+|+..   ++++ +.++...+..+.
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~-~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~~  251 (502)
T TIGR00887       173 IVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLAL-YFRLTIPETPRYTADVAKDVEQAASDMSAVLQV  251 (502)
T ss_pred             HHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHH-HHHHhCCCCHHHHHHhCcchHHHHHHHHHHhcc
Confidence            2                           269999988887765544 4457899999842   2221 122112211111


Q ss_pred             cccC--CCCCCcccccccccchhHHHHHHhhcchh---hHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHH---
Q 013312          215 VNQN--ESNSPVKIPVCKKIPSIRDLICLLRSSVT---LSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFAD---  286 (445)
Q Consensus       215 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~---  286 (445)
                      +.++  ++.++.+++.++.+.++++.++...+++.   ........+...+.+++...+.|.++++ .|+++.+.+.   
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~-~G~~~~~~~~~~~  330 (502)
T TIGR00887       252 KIEAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSA-IGYSPPAATNNAY  330 (502)
T ss_pred             ccccCcccccchhccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHH-HcCCCCccchhHH
Confidence            1010  11000000011111234454432212222   1111222333344455566678888876 6876542211   


Q ss_pred             ---------HHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHhcCC----chhHHHHHHH-Hhhhhhh
Q 013312          287 ---------LMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWS----AWVPYATTAF-SVLVVFA  352 (445)
Q Consensus       287 ---------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-g~~~~~~  352 (445)
                               ......++.+++. ++.+++.||+|||+++..+..+..++..++....+    ........+. .++....
T Consensus       331 ~~~~~~~~~~~~~~~~~~i~g~-~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (502)
T TIGR00887       331 EELYKTAVGNLIIALAGTVPGY-WVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGP  409 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCC
Confidence                     1222333444555 77789999999999988888777766655544221    1111111111 2222334


Q ss_pred             hhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC---CCcccchhHHHHHHHHHHHHHHHHHhc
Q 013312          353 TPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKG---APFNFPGFSIMCIGLASMVAFIQSLMM  429 (445)
Q Consensus       353 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (445)
                      .+..+.+.+|.+|++.|+++.|+.+..+.++++++|.+.+.+.+......   ...+. ...+.+.+++.+++.+..+++
T Consensus       410 ~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~i~~~~l  488 (502)
T TIGR00887       410 NATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWM-GHVLEIFALFMFLGILFTLLI  488 (502)
T ss_pred             CchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccc-hHHHHHHHHHHHHHHHHheEe
Confidence            56677888999999999999999999999999999999999987431110   00111 223455555556555554444


Q ss_pred             cCCCCC
Q 013312          430 SHTPAS  435 (445)
Q Consensus       430 ~~~~~~  435 (445)
                       +|++.
T Consensus       489 -pEt~~  493 (502)
T TIGR00887       489 -PETKG  493 (502)
T ss_pred             -ccCCC
Confidence             44443

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=100.00  E-value=9.5e-34  Score=274.71  Aligned_cols=405  Identities=14%  Similarity=0.091  Sum_probs=270.1

Q ss_pred             HHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHHHHHHHHHHHH
Q 013312           18 FLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAI   97 (445)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~   97 (445)
                      +...++.....+.+|....+.--....+.+.+..+.|++.+++.++..++++++|+++||+|||+++..+.++.+++.++
T Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~  117 (481)
T TIGR00879        38 LMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAIL  117 (481)
T ss_pred             HhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            44555666777777777665311111222455788999999999999999999999999999999999999999999999


Q ss_pred             HHhhcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhh---hh----hchh
Q 013312           98 LAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAA---RF----LSTT  170 (445)
Q Consensus        98 ~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~---~~----~~w~  170 (445)
                      +.+..+...++.+++.|+++|+ +.+...+...+++.|++|+++|++++++.+....+|..+++.++   ..    .+||
T Consensus       118 ~~~~~~~~~~~~~~~~r~l~G~-~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~  196 (481)
T TIGR00879       118 MGLAAFALSVEMLIVGRVLLGI-GVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWR  196 (481)
T ss_pred             HHHhccccchHHHHHHHHHHHh-hhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHH
Confidence            8776553336689999999999 88888899999999999999999999999999999999999988   33    5899


Q ss_pred             hHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCccccchhhhcccccCCCCCCccc-----------ccccccchhHHHH
Q 013312          171 SAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKI-----------PVCKKIPSIRDLI  239 (445)
Q Consensus       171 ~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~  239 (445)
                      +.|++.++..++. +...+++||+++...++++.++..+...+..+.+++..+..+           +.+...+.+++.+
T Consensus       197 ~~f~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (481)
T TIGR00879       197 IPLGLQLIPAGLL-FLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQPSWGSLF  275 (481)
T ss_pred             HHHHHHHHHHHHH-HHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhhccccHHHHH
Confidence            9999976655444 444567888764221111111111110000000000000000           0000001122222


Q ss_pred             HHhh--cchhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHH
Q 013312          240 CLLR--SSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLS  317 (445)
Q Consensus       240 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  317 (445)
                      +...  +++.++...+..+...........+.|.+.++ .|++..+.+.......+..+++. ++.+++.||+++|+.+.
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~-~~~g~l~d~~~~~~~~~  353 (481)
T TIGR00879       276 SSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFEN-AGVSTDHAFLVSIIVGAVNFAFT-FVAIFLVDRFGRRPLLL  353 (481)
T ss_pred             hcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHH-cCCCchHHHHHHHHHHHHHHHHH-HHHHHHHHHhcchHHHH
Confidence            1111  12223333333333333344455666776665 79999888888888888888888 77799999999999988


Q ss_pred             HHHHHHHHHHHHHHh---cC-C------chh-HHHHHHHHhhhh-hhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHH
Q 013312          318 LGLFAACINMFICSI---SW-S------AWV-PYATTAFSVLVV-FATPSFRSIVSKQVGPNEQGKAQGCISGISSFANI  385 (445)
Q Consensus       318 ~~~~~~~~~~~~~~~---~~-~------~~~-~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~  385 (445)
                      .+..+..++.+.+.+   .. +      .+. .....++..+.+ ...+....+..|.+|+++|+++.|+.+...+++++
T Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~  433 (481)
T TIGR00879       354 IGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANF  433 (481)
T ss_pred             HHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHH
Confidence            888877777666652   11 1      122 222233333332 33466677789999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhcCCCCcccchhHHHHHHHHHHHHHHHHHhccCCCC
Q 013312          386 VSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMSHTPA  434 (445)
Q Consensus       386 i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (445)
                      ++|.+.+.+.++.       ++.. .+.+.+++++++.+......++++
T Consensus       434 i~~~~~~~~~~~~-------~~~~-~f~~~~~~~~~~~i~~~~~~~~~~  474 (481)
T TIGR00879       434 IVGFLFPTMLESI-------GVGG-VFIFFGGLNVLGLIFVYFFLPETK  474 (481)
T ss_pred             HHHHHHHHHHHhc-------Cccc-eehhHHHHHHHHHHHHheecccCC
Confidence            9999999999875       2222 245555566665665555544443

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK15075 citrate-proton symporter; Provisional

Probab=100.00  E-value=1.7e-32  Score=261.35  Aligned_cols=357  Identities=13%  Similarity=0.047  Sum_probs=244.5

Q ss_pred             hhhHhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHH-HHHHHHHHHHHHhhhhccccccccCchh
Q 013312            4 EKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSG-FQQAIIGLGTLVMMPVIGNLSDQYGRKA   82 (445)
Q Consensus         4 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g-~~~s~~~l~~~~~~~~~G~l~Dr~Grr~   82 (445)
                      +.|++....++++.++++++...+.+..|.+.+|. +.++.+  ......+ .......+...+++++.|+++||+|||+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~-~~~~~~--~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~   87 (434)
T PRK15075         11 ESKARAILRVTSGNFLEMFDFFLFGFYATAIAKTF-FPAGNE--FASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRK   87 (434)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCCc--hHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHH
Confidence            34556677788999999999999999999988774 221222  1111111 1222334455678999999999999999


Q ss_pred             HhHHHHHHHHHHHHHHHhhcCcchhH--------HHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHh
Q 013312           83 MLTLPLTLSIIPLAILAYRRSISFFY--------AYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLS  154 (445)
Q Consensus        83 ~l~~~~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~  154 (445)
                      +++.+..+..++.++++++++   ++        .+++.|+++|+ +.+...+...++++|++|+++|++++++.+...+
T Consensus        88 ~l~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~l~~~R~l~G~-~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~  163 (434)
T PRK15075         88 GLIVTLSIMASGTLLIAFVPG---YATIGLAAPLLVLLGRLLQGF-SAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQ  163 (434)
T ss_pred             HHHHHHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHHHHHHhhc-cccccHHHHHHHHHhhCCcccchHHHHHHHHHHH
Confidence            999999999999999999998   55        46899999999 8888888889999999999999999999988877


Q ss_pred             hhhhhhhhhhhh------------hchhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCccccchhhhcccccCCCCC
Q 013312          155 ASFVCGTLAARF------------LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNS  222 (445)
Q Consensus       155 ~g~~~g~~l~~~------------~~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (445)
                      +|..+|+.++..            ++||++|++..... ..........||+++..+++                +    
T Consensus       164 ~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~-~~~~~~~~~~~e~~~~~~~~----------------~----  222 (434)
T PRK15075        164 VAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCLIV-PFIFLIRRSLEETEEFLARK----------------H----  222 (434)
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHH-HHHHHHHHhcCCCHHHHHhh----------------h----
Confidence            777666655442            58999998765432 21111112222221100000                0    


Q ss_pred             CcccccccccchhHHHHHHhhcchhhHH-HHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHH
Q 013312          223 PVKIPVCKKIPSIRDLICLLRSSVTLSQ-AAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLL  301 (445)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~  301 (445)
                          + .    +.++.++...+++..+. .....+...........+.|.|+++.+|+++.+.++......++.+++. +
T Consensus       223 ----~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~-~  292 (434)
T PRK15075        223 ----R-P----SMREIFRSLAANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWL-P  292 (434)
T ss_pred             ----c-c----ccccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-H
Confidence                0 0    00111222223333322 2333334445566678889999998889999998888888888888888 7


Q ss_pred             HHHHhhhhhcchhHHHHHHHHHHHHHH-HH-Hh-c-CCchhHHH-HHHHHhhhhhhhhhHHHHHhcccCCccchhHHHHH
Q 013312          302 FMPLLAPILGEAKLLSLGLFAACINMF-IC-SI-S-WSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCI  376 (445)
Q Consensus       302 ~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~-~~-~-~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~  376 (445)
                      +.|+++||++||+....+..+..+... .. .. . ++...... ..+.+++.+...+....+..|.+|++.|+++.|+.
T Consensus       293 ~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~  372 (434)
T PRK15075        293 IGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLA  372 (434)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHH
Confidence            789999999999987766544332221 11 11 1 22222222 23445666666677778899999999999999997


Q ss_pred             HHHHHH-HHHHHHHHHHHHHHhh
Q 013312          377 SGISSF-ANIVSPLIFSPLTALF  398 (445)
Q Consensus       377 ~~~~~~-g~~i~~~~~g~l~~~~  398 (445)
                      +..... ++.++|.+.|++.|+.
T Consensus       373 ~~~~~~~~g~~~p~~~g~i~~~~  395 (434)
T PRK15075        373 YSLATAIFGGFTPAISTWLIHVT  395 (434)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHhc
Confidence            665554 5888999999999986

>TIGR00897 2A0118 polyol permease family

Probab=100.00  E-value=2.1e-32  Score=258.14  Aligned_cols=375  Identities=12%  Similarity=0.139  Sum_probs=270.1

Q ss_pred             hHhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhH
Q 013312            6 EIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLT   85 (445)
Q Consensus         6 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~   85 (445)
                      ++|.+...+++.++..++.+...+.+|.+.+|        .+.+..+.|++.+.+.++..+++++.|+++||+|||+++.
T Consensus        11 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--------~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~   82 (402)
T TIGR00897        11 IPLNLLWGYIGVVVFMTGDGLEQGWLSPFLKA--------LGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMM   82 (402)
T ss_pred             CCchhhHHHHHHHHHHHhhhhHHHhHHHHHHH--------hCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence            56788888999999999988888888888754        3666788999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH---h-hcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhh-hhh
Q 013312           86 LPLTLSIIPLAILA---Y-RRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASF-VCG  160 (445)
Q Consensus        86 ~~~~~~~~~~~~~~---~-~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~-~~g  160 (445)
                      .+..+.+++.+++.   . .++   ++.+++.|++.|+ +.+...+...+.+.|+.|+++|++++|+.+...++|. .+|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~i~G~-g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g  158 (402)
T TIGR00897        83 IGLLLWCVGHAAFIVFGLGHAN---YPLILLFYGIRGL-GYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFG  158 (402)
T ss_pred             HHHHHHHHHHHHHHHHhccCcc---HHHHHHHHHHHHc-chHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999988876653   2 245   7888899999999 7777777888889999999999999999999999996 578


Q ss_pred             hhhhhh----hchhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCccccchhhhcccccCCCCCCcccccccccchhH
Q 013312          161 TLAARF----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIR  236 (445)
Q Consensus       161 ~~l~~~----~~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (445)
                      |.+++.    ++|+..++.......+..++..+..+|.+++++++ +                     ++    +.++.+
T Consensus       159 ~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---------------------~~----~~~~~~  212 (402)
T TIGR00897       159 SYYSSYAIPAFGEMNTLWSALAFVLTGGVIALFSNKDIFTPQHMQ-T---------------------RE----KFSELG  212 (402)
T ss_pred             HHHHHhcccccchHHHHHHHHHHHHHHHHHHHhccCCCCCccccc-C---------------------Cc----chhhHH
Confidence            888764    47665555444333333333334445432211110 0                     00    000112


Q ss_pred             HHHHHhhcchhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHH
Q 013312          237 DLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLL  316 (445)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  316 (445)
                      +..+..+++|.++...+..++.........++.|.|.++ +|+++.+.+.+.....++..++. +..|+++||++||+..
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~ig~-~~~g~l~dr~~~~~~~  290 (402)
T TIGR00897       213 KAATILFTNPNVLLGGMVRIINTIGLFGFAVFLPMFVAE-LGFSTSEWLQIWGTFFFTNIVFN-VIFGIVGDKLGWMNTV  290 (402)
T ss_pred             HHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhHHHHHHHHHHHHHHHHH-HHHHHHHHhhcchhHH
Confidence            223345677888777777777777777888899999976 89999999998888999999988 7779999999988765


Q ss_pred             H-HHHHHHHHHHHHHHh-----cCCchhHHH-HHHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHH
Q 013312          317 S-LGLFAACINMFICSI-----SWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPL  389 (445)
Q Consensus       317 ~-~~~~~~~~~~~~~~~-----~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~  389 (445)
                      . .+.....++...+..     .++.+.... ..+.|++.+...+ ......+. ++++||++.|+.+...++++.++|.
T Consensus       291 ~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~-~~~~~g~~~g~~~~~~~lg~~~gp~  368 (402)
T TIGR00897       291 RWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIALGIFLAGYVP-LAAVFPTL-APKHKGAAMSVLNLSAGLSAFLAPA  368 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHhh-CcchhHHHHHHHHHHHHHHHHHHHH
Confidence            3 333333333222221     123333322 3555666655444 34555665 4578999999999999999999999


Q ss_pred             HHHHHHHhhhcCCCCcccchhHHHHHHHHHHHHHHHHHhcc
Q 013312          390 IFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMS  430 (445)
Q Consensus       390 ~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (445)
                      +.|.+.|..       ++.. .+.+.+++.+++.....++|
T Consensus       369 i~g~l~~~~-------g~~~-~~~~~a~~~~i~~~~~~~~~  401 (402)
T TIGR00897       369 IAVLFIGFF-------GAIG-VVWIFAALYVVSAFLTAFIR  401 (402)
T ss_pred             HHHHHHhhc-------chHH-HHHHHHHHHHHHHHHHHHhc
Confidence            999999976       3333 35555566666666555543

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=100.00  E-value=2e-32  Score=260.74  Aligned_cols=379  Identities=16%  Similarity=0.193  Sum_probs=307.5

Q ss_pred             hHhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhH
Q 013312            6 EIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLT   85 (445)
Q Consensus         6 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~   85 (445)
                      +++.+..++.+.+++.++..+....++.++.+.        +-|+...|++.++..+...+.+++.|.++||++||++++
T Consensus         8 r~~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~l--------t~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili   79 (524)
T PF05977_consen    8 RNRNFRRLWIAQLISNLGDWMQTVALAWLVTQL--------TGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILI   79 (524)
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHH
Confidence            357788899999999999999999999988653        455678899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhh--cCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhh
Q 013312           86 LPLTLSIIPLAILAYR--RSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLA  163 (445)
Q Consensus        86 ~~~~~~~~~~~~~~~~--~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l  163 (445)
                      .+.++.++..+..++.  .+....+.+++.-++.|+ +.+...|+.++++.|.+|+++..+++++.+...++..++||.+
T Consensus        80 ~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~-~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPal  158 (524)
T PF05977_consen   80 LSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGI-GSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPAL  158 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchH
Confidence            9998877665554432  111127889999999999 8999999999999999999999999999999999999999999


Q ss_pred             hhhh----chhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCccccchhhhcccccCCCCCCcccccccccchhHHHH
Q 013312          164 ARFL----STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLI  239 (445)
Q Consensus       164 ~~~~----~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (445)
                      +|.+    |-.+.|.+.++..++.... ....+.++++++.                          ..++..+.+++.+
T Consensus       159 gG~Lva~~G~~~~f~inalsfl~~i~~-l~~~~~~~~~~~~--------------------------~~e~~~~~l~~G~  211 (524)
T PF05977_consen  159 GGILVAFFGAAAAFLINALSFLISILA-LLRWKPPPPPSSL--------------------------PRERFFSALREGL  211 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcccccccccc--------------------------chhhhhhhHHHHH
Confidence            9873    7788899888765554333 3444432211111                          1112234667778


Q ss_pred             HHhhcchhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHH
Q 013312          240 CLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLG  319 (445)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  319 (445)
                      +..+++|.+...+...++.++........+|.+.++.+|.++...|++.+..+++.++++ ++.+++.+|+++++++..+
T Consensus       212 ryv~~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Ga-l~~~~l~~~~~~~~lv~~~  290 (524)
T PF05977_consen  212 RYVRSSPPLRSVLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGA-LLLPRLRRRLSSRRLVLLA  290 (524)
T ss_pred             HHHhcchHHHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHH-HHHHHhhcccCcchhhHHH
Confidence            888888888877777777777666778889999999999999999999999999999999 7778999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCchhHHHH-HHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013312          320 LFAACINMFICSISWSAWVPYAT-TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALF  398 (445)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~  398 (445)
                      .+..+++.+.+++.++.|..... ++.|++........++..++..|++.||++++++++....+..+|..+.|.+.++.
T Consensus       291 ~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~  370 (524)
T PF05977_consen  291 SLLFALALLLLALSPSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHF  370 (524)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999988888888888766654 66788888888899999999999999999999999999999999999999999986


Q ss_pred             hcCCCCcccchhHHHHHHHHHHHHHHHHHhc
Q 013312          399 LSKGAPFNFPGFSIMCIGLASMVAFIQSLMM  429 (445)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (445)
                             +... .+.+.++..+++.+.....
T Consensus       371 -------g~~~-al~~a~~~lll~~~~~~~~  393 (524)
T PF05977_consen  371 -------GVRT-ALLIAGAALLLSALIALRF  393 (524)
T ss_pred             -------CHHH-HHHHHHHHHHHHHHHHHHh
Confidence                   3333 3455555555555544433

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=100.00  E-value=1.1e-32  Score=262.96  Aligned_cols=367  Identities=13%  Similarity=0.104  Sum_probs=252.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHHHHHHHHHHHHHHhhcCc-chhHHHHHHHHHhhhccchhH
Q 013312           47 SLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSI-SFFYAYYALRTLTAMVCEGSI  125 (445)
Q Consensus        47 ~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~r~l~G~~~~g~~  125 (445)
                      +.+..+.|++.+++.++..+++++.|+++||+|||+++..+.++.+++.++.++.++. ..++.+.+.|++.|+ +.+..
T Consensus        57 g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~-~~g~~  135 (438)
T TIGR00712        57 GFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGW-FQGMG  135 (438)
T ss_pred             CCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHH-Hhhcc
Confidence            6667889999999999999999999999999999999999999999998887765321 116778899999999 77888


Q ss_pred             HHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhhhh-----hchhhHHHHHHHHHHHHHHHHHHhccCCCCCCCC
Q 013312          126 NCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF-----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDD  200 (445)
Q Consensus       126 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~-----~~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~  200 (445)
                      ++.....+.|++|+++|++++++.+...++|..++|.+.+.     .+||+.|++.++++++..+..++.+||++++.+.
T Consensus       136 ~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~  215 (438)
T TIGR00712       136 WPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTPQSCGL  215 (438)
T ss_pred             hHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCC
Confidence            88888999999999999999999999999998888765432     4899999999988877776777778886543221


Q ss_pred             cCCccccchhhhcccccCCCCCCcccccccccchhHHH-HHHhhcchhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCC
Q 013312          201 DDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDL-ICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHF  279 (445)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  279 (445)
                      ++..+     .+++..++..+     +.+++ .+.++. .+...+++.++...+..++.....+....+.|.|+++..|+
T Consensus       216 ~~~~~-----~~~~~~~~~~~-----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~  284 (438)
T TIGR00712       216 PPIEE-----YRNDYPDDYNE-----KAEQE-LTAKEIFMQYVLPNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHF  284 (438)
T ss_pred             CCchh-----ccccccccccc-----ccccc-cchHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCC
Confidence            11000     00000000000     00000 011221 22356777788777776666667677888999999988899


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHH---HHHHHHHHhcC--CchhHHH-HHHHHhhhhhhh
Q 013312          280 NKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAA---CINMFICSISW--SAWVPYA-TTAFSVLVVFAT  353 (445)
Q Consensus       280 ~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~--~~~~~~~-~~~~g~~~~~~~  353 (445)
                      ++.+.++......+..+++. +..+++.||+++++....+....   .++.+.+...+  +.+.... .+..+.+.....
T Consensus       285 s~~~~~~~~~~~~~~~~ig~-~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  363 (438)
T TIGR00712       285 ALDKSSWAYFLYEYAGIPGT-LLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIGFLIYGPV  363 (438)
T ss_pred             ChhhHHHHHHHHHHHHHHHH-HHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHccHH
Confidence            99999999999999999988 78899999996433222222221   11222222221  2232222 122333222222


Q ss_pred             hhHHHHHhcccCCccchhHHHHHHHHHHHHH-HHHHHHHHHHHHhhhcCCCCcccchhHHHHHHHHHHHHHHHHHhccCC
Q 013312          354 PSFRSIVSKQVGPNEQGKAQGCISGISSFAN-IVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMSHT  432 (445)
Q Consensus       354 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~-~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (445)
                      ........|.+|+++||++.|+.+...++++ .++|.+.|.+.|+.       ++.. .+.+..++.+++.+......++
T Consensus       364 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~-------g~~~-~~~~~~~~~~~~~~~~~~~~~~  435 (438)
T TIGR00712       364 MLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF-------GWDG-GFMVMIGGSILAVILLIVVMIG  435 (438)
T ss_pred             HHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhc-------cchH-HHHHHHHHHHHHHHHHHHHHhh
Confidence            2223457789999999999999999988875 68999999999976       3333 3455555555666666655555


Q ss_pred             CC
Q 013312          433 PA  434 (445)
Q Consensus       433 ~~  434 (445)
                      ++
T Consensus       436 ~~  437 (438)
T TIGR00712       436 EK  437 (438)
T ss_pred             cc
Confidence            43

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=100.00  E-value=4e-32  Score=256.38  Aligned_cols=342  Identities=13%  Similarity=0.098  Sum_probs=253.7

Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHHHHHHHH
Q 013312           14 FVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSII   93 (445)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~   93 (445)
                      .+..+...++..++.|.+|.+.++        ++.+..+.++..+++.+++.++++++|+++||+|||++++.+.++.++
T Consensus        22 ~~~~~~~~~~~~~~~p~l~~i~~~--------~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~   93 (413)
T PRK15403         22 ILYDFAAYLTTDLIQPGIINVVRD--------FNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTL   93 (413)
T ss_pred             HHHHHHHHHHHHhhccCHHHHHHH--------hCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHH
Confidence            334455666788999999987644        456667789999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhhhh----hch
Q 013312           94 PLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF----LST  169 (445)
Q Consensus        94 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~----~~w  169 (445)
                      +.+++.++++   ++.++++|+++|+ +.+...+...+++.|++|+++|++++++......+|..+||.+++.    .+|
T Consensus        94 ~~~~~~~a~~---~~~l~~~r~l~Gi-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw  169 (413)
T PRK15403         94 ACAATLFTTS---MTQFLIARFIQGT-SICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHW  169 (413)
T ss_pred             HHHHHHHcCC---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence            9999999999   9999999999999 7776667778899999999999999999999999999999988875    489


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCccccchhhhcccccCCCCCCcccccccccchhHHHHHHhhcchhhH
Q 013312          170 TSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLS  249 (445)
Q Consensus       170 ~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (445)
                      |+.|++.+++.++..+..++.+||++++++++                           ...++..++ .+...++|.++
T Consensus       170 ~~~f~~~~~~~~i~~~~~~~~lp~~~~~~~~~---------------------------~~~~~~~~~-~~~ll~~~~~~  221 (413)
T PRK15403        170 KVLFAIIAVMGLIAFVGLLLAMPETVKRGAVP---------------------------FSAKSVLRD-FRNVFRNRLFL  221 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCccccCCC---------------------------CChHHHHHH-HHHHHcCHHHH
Confidence            99999999887777666566778764321110                           000011223 33355778888


Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHH
Q 013312          250 QAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFI  329 (445)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  329 (445)
                      ...+..++.......+..+.|.++++.+|+++.+.++.......+..++. .+.+++.+|..+++.......+..++..+
T Consensus       222 ~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~-~l~~~~~~~~~~~~~~~~~~~~~~ig~~l  300 (413)
T PRK15403        222 TGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVAN-AIVARFVKDPTEPRFIWRAVPIQLVGLAL  300 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHhccCCchhHHHHHHHHHHHHHHH
Confidence            77777777777777777888999999889999999998877777777777 44455544433333332222222222222


Q ss_pred             HH----hcCCchh--HHHHHHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013312          330 CS----ISWSAWV--PYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTAL  397 (445)
Q Consensus       330 ~~----~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~  397 (445)
                      +.    ...+.+.  .....+.+++.+...|...+..-. -.+..+|++.++.+.....+...++...|++.++
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~p~~~~~al~-~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~  373 (413)
T PRK15403        301 LIVGNLLWPHVWLWSVLGTSLYAFGIGLIFPTLFRFTLF-SNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFN  373 (413)
T ss_pred             HHHHHHHccccHHHHHHHHHHHHHHHHHHhHHHHHHHhc-cCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            21    1233332  223466678888888877754322 1223479999999999999999999999988775

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=100.00  E-value=1.1e-33  Score=265.71  Aligned_cols=359  Identities=14%  Similarity=0.082  Sum_probs=265.0

Q ss_pred             HHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHHHHHHHHHHH
Q 013312           17 VFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLA   96 (445)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~   96 (445)
                      .+..+.......+..|.+.+        +++.+..+.|++.+++.++..+++++.|+++||+|||+++..+.++.+++.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~--------~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~   75 (379)
T TIGR00881         4 YAAYYLVRKNFALAMPYLVE--------EIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNL   75 (379)
T ss_pred             hhHHHHhHHhhhhhhHHHHH--------HhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHH
Confidence            44556667777777887754        3466678899999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhh-hhhhh----hchhh
Q 013312           97 ILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGT-LAARF----LSTTS  171 (445)
Q Consensus        97 ~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~-~l~~~----~~w~~  171 (445)
                      +++++++   ++.+++.|++.|+ +.+...+...+++.|++|+++|++++++.+....+|..++| .++..    .+||+
T Consensus        76 ~~~~~~~---~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  151 (379)
T TIGR00881        76 FFGFSTS---LWVMAALWALNGI-FQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHW  151 (379)
T ss_pred             HHHHhhh---HHHHHHHHHHHHh-hccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchh
Confidence            9999999   9999999999999 88888899999999999999999999999999999999998 34433    48999


Q ss_pred             HHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCccccchhhhcccccCCCCCCcccccccccchhHHHHHHhhcchhhHHH
Q 013312          172 AFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQA  251 (445)
Q Consensus       172 ~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (445)
                      .|++.+++.++..+...+..||++++++.+++.++..        ++.+.+  .++.+++.+..+...+...++|.++..
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (379)
T TIGR00881       152 VFIVPGIIAIIVSLICFLLLRDSPQSCGLPPAEEMPN--------EEPDGD--AEKKEEELTKKQIFLQYVLLNKVLWYI  221 (379)
T ss_pred             HHHHHHHHHHHHHHHHheeeCCCccccccCccccCcc--------cccccc--cccccccccchHHHHHHHHhcchHHHH
Confidence            9999888777766666667777654332211110000        000000  000011111222233445677778877


Q ss_pred             HHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcc-hhH-HHHH-HHHHHHHHH
Q 013312          252 AVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGE-AKL-LSLG-LFAACINMF  328 (445)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~-~~~~-~~~~~~~~~  328 (445)
                      .+..++..........+.|.|+++.+|+++.+.+.......++.+++. ++.+++.||..+ |+. .... ......+..
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~  300 (379)
T TIGR00881       222 SLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGT-LLAGWLSDKLFNGRRGPLAVFFMALIIVSLL  300 (379)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhH-HHHHHHHHHHcCCcchHHHHHHHHHHHHHHH
Confidence            777777777778888999999998899999999999999999999988 788999998643 332 2221 122222222


Q ss_pred             HHHhcC--CchhHHH-HHHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013312          329 ICSISW--SAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALF  398 (445)
Q Consensus       329 ~~~~~~--~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~  398 (445)
                      .....+  +.+.... ..+.+.......+....+..|.+|+++||++.|+.+...++|..++|.+.|.+.|+.
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~  373 (379)
T TIGR00881       301 VYWLNPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGF  373 (379)
T ss_pred             HHhcCcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhh
Confidence            222211  2222222 244455444555666778899999999999999999999999999999999999976

>TIGR00895 2A0115 benzoate transport

Probab=100.00  E-value=3.8e-33  Score=263.84  Aligned_cols=368  Identities=16%  Similarity=0.154  Sum_probs=264.7

Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHHHHH
Q 013312           11 SHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTL   90 (445)
Q Consensus        11 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~   90 (445)
                      ...++..+...++.....+..|.+.+        +++.+..+.|++.+.+.++..++.++.|+++||+|||+.+..+.++
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~   91 (398)
T TIGR00895        20 ILSFLIMLMDGYDLAAMGFAAPAISA--------EWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILL   91 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHhh--------ccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHH
Confidence            33444555555666667777777764        3466667889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhhhh----
Q 013312           91 SIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF----  166 (445)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~----  166 (445)
                      .+++.++..++++   ++.+++.|++.|+ +.+...+...+++.|++|+++|++++++.+....+|..++|.+++.    
T Consensus        92 ~~~~~~~~~~~~~---~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  167 (398)
T TIGR00895        92 FSVFTLLCALATN---VTQLLILRFLAGL-GLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPV  167 (398)
T ss_pred             HHHHHHHHHHccc---hHHHHHHHHHHhc-ccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhc
Confidence            9999999999998   8999999999999 8888889999999999999999999999999999999999988865    


Q ss_pred             hchhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCC--ccccchhhhcccccCCCCCCcccccccccchhHHHHHHhhc
Q 013312          167 LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDL--TRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRS  244 (445)
Q Consensus       167 ~~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (445)
                      .+|++.|++.+++..+..++....+||+++...++++  .++..++..+....+++. +.. +..++.+..++..+.+++
T Consensus       168 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~  245 (398)
T TIGR00895       168 FGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQS-ALP-EQKATQGTKRSVFKALFQ  245 (398)
T ss_pred             ccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhcCHHHHHHHHHHHHHhccccccc-ccc-ccccccchhhHHHHHHhc
Confidence            4899999988766666666666778887643222111  011111111110000000 000 000111112222222222


Q ss_pred             c---hhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHH
Q 013312          245 S---VTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLF  321 (445)
Q Consensus       245 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  321 (445)
                      +   +..+......++..........+.|.+.+ ..|+++.+.+.......++.+++. ++.+++.||+++|+.......
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~  323 (398)
T TIGR00895       246 GKTARITVLLWLLYFMLLVGVYFLTNWLPKLMV-ELGFSLSLAATGGALFNFGGVIGS-IIFGWLADRLGPRVTALLLLL  323 (398)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHhhcchHHHHHHHHH
Confidence            2   22333344444555566666778885554 489999999999999999999988 888999999999855444443


Q ss_pred             HHHHHHHHHHhcCCchhHHH-HHHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 013312          322 AACINMFICSISWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPL  394 (445)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l  394 (445)
                      ......+......+.+.... .++.+++.+...+...++..|.+|+++||++.|+.+....+|..++|.+.|++
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       324 GAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            33333333332344443333 46778888888999999999999999999999999999999999999999875

>PRK10133 L-fucose transporter; Provisional

Probab=100.00  E-value=4.3e-32  Score=257.41  Aligned_cols=347  Identities=14%  Similarity=0.095  Sum_probs=262.6

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHHH
Q 013312            9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL   88 (445)
Q Consensus         9 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~   88 (445)
                      .+..+.+..++..+......+.+|.+.        ++++++..+.|++.+.+.+++.+++++.|+++||+|||+++..+.
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~p~i~--------~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~   98 (438)
T PRK10133         27 PFALLCSLFFLWAVANNLNDILLPQFQ--------QAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGL   98 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence            345566667777888888889999885        344677789999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH---HhhcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhhh
Q 013312           89 TLSIIPLAIL---AYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAAR  165 (445)
Q Consensus        89 ~~~~~~~~~~---~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~  165 (445)
                      .+++++.+++   .++++   ++.++++|+++|+ +.+...+..++++.|+.|+++|.+.++..+..+.+|..+||.++.
T Consensus        99 ~~~~~~~~l~~~~~~a~~---~~~ll~~r~l~G~-g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~  174 (438)
T PRK10133         99 FLYALGAALFWPAAEIMN---YTLFLVGLFIIAA-GLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQ  174 (438)
T ss_pred             HHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHH-HHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999886   45778   9999999999999 889999999999999887777777899999999999999887753


Q ss_pred             h------------------------------hchhhHHHHHH-HHHHHHHHHHHHhccCCCCCCCCcCCccccchhhhcc
Q 013312          166 F------------------------------LSTTSAFQAAT-IVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEG  214 (445)
Q Consensus       166 ~------------------------------~~w~~~f~~~~-~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~  214 (445)
                      .                              .+||++|+... +..++..+......||.++++++              
T Consensus       175 ~l~~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~~~~--------------  240 (438)
T PRK10133        175 SLILSNVPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHS--------------  240 (438)
T ss_pred             HHHhcCCcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccc--------------
Confidence            2                              24566665433 33223322222333432111000              


Q ss_pred             cccCCCCCCcccccccccchhHHHHHHhhcchhhHHHHHHHHHHHhhhhhhHHHHHHHH-HhhcCCchhhHHHHHHHHHH
Q 013312          215 VNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFL-KAQFHFNKNQFADLMLIAGL  293 (445)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~g~~~~~~~~  293 (445)
                                . +  +..+..++ .+.+.++|.++...+..++..........+.+.|+ ++.+|+++.+.+..+....+
T Consensus       241 ----------~-~--~~~~~~~~-~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~  306 (438)
T PRK10133        241 ----------D-A--KQGSFSAS-LSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMV  306 (438)
T ss_pred             ----------c-c--cccchhhh-HHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHH
Confidence                      0 0  00001111 22244566666666666666667777777888885 56689999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHhhhhhhhhhHHHHHhcccCCccchhHH
Q 013312          294 AGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQ  373 (445)
Q Consensus       294 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~  373 (445)
                      +.++++ +..+++.||+++|+.+..+..+..+.+++..+.++.+......+.+++.+..+|..++...+..|+ +.+++.
T Consensus       307 ~~~vG~-~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~glg~~~i~P~~~s~a~~~~~~-~~~~as  384 (438)
T PRK10133        307 CFFIGR-FTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQ-DTKYGS  384 (438)
T ss_pred             HHHHHH-HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHcccch-hhccch
Confidence            999998 888999999999999888877777666665555554444445778999999999999999998874 567888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh
Q 013312          374 GCISGISSFANIVSPLIFSPLTALF  398 (445)
Q Consensus       374 g~~~~~~~~g~~i~~~~~g~l~~~~  398 (445)
                      ++.. +..+|+.++|.+.|.+.|..
T Consensus       385 ~l~~-~~~~g~~~~~~i~G~l~~~~  408 (438)
T PRK10133        385 SFIV-MTIIGGGIVTPVMGFVSDAA  408 (438)
T ss_pred             hHHh-HHhccchHHHHHHHHHHHhc
Confidence            8776 45578899999999998875

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=100.00  E-value=5e-32  Score=255.48  Aligned_cols=351  Identities=15%  Similarity=0.104  Sum_probs=265.7

Q ss_pred             CcchhhHhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCc
Q 013312            1 MGMEKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGR   80 (445)
Q Consensus         1 m~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Gr   80 (445)
                      |+.++.+|.+.......++..+......|.+|.+.++        ++.+..+.+++.+++.++..+++++.|+++||+||
T Consensus         1 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~--------~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~gr   72 (394)
T PRK11652          1 MKRQRNVNLLFMLVLLVAVGQMAQTIYVPAIADMARD--------LNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGR   72 (394)
T ss_pred             CcchhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH--------hCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCC
Confidence            5545556666666777777778888889999988744        46777889999999999999999999999999999


Q ss_pred             hhHhHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhh
Q 013312           81 KAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCG  160 (445)
Q Consensus        81 r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g  160 (445)
                      |+++..+....+++.+++.++++   ++.+++.|++.|+ +.+...+....+..|.+++++|+++.+..+.+..+|..+|
T Consensus        73 r~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  148 (394)
T PRK11652         73 RPVILVGMSIFILGTLVALFAHS---LTVLIAASAIQGL-GTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLA  148 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHh-hhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999   9999999999999 7777778888999999999999999999999999999898


Q ss_pred             hhhhhh----hchhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCccccchhhhcccccCCCCCCcccccccccchhH
Q 013312          161 TLAARF----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIR  236 (445)
Q Consensus       161 ~~l~~~----~~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (445)
                      |.+++.    .+||+.|++.++..++..+...+..||++++++++                               ++.+
T Consensus       149 ~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~  197 (394)
T PRK11652        149 PLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETRPADARR-------------------------------TRVL  197 (394)
T ss_pred             HHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccCccccch-------------------------------hHHH
Confidence            888765    48999999988776666555556677754322110                               0112


Q ss_pred             HHHHHhhcchhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHH
Q 013312          237 DLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLL  316 (445)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  316 (445)
                      +.++...++|.++...+..+........+....+.++++.+|+++.+.++.......+..++. .+.+++.||.+++...
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~-~~~~~l~~~~~~~~~~  276 (394)
T PRK11652        198 ASYRTLLSNRRFNCYLLMLIGTLAGIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGA-WFAGRPNKRFSTLMWQ  276 (394)
T ss_pred             HHHHHHHcChHHHHHHHHHHHHHHHHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence            223335566666655555555555555566777888888889999999998888888887777 7778999988743332


Q ss_pred             HH-HHHHHHHHHHHHHh--cCCchhHHH-HHHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHH
Q 013312          317 SL-GLFAACINMFICSI--SWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFS  392 (445)
Q Consensus       317 ~~-~~~~~~~~~~~~~~--~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g  392 (445)
                      .. +.....+.......  ..+.+.... ..+.+++.+...|...++..|..| +++|++.++.+....+|..+++.+.+
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~  355 (394)
T PRK11652        277 SVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSA  355 (394)
T ss_pred             HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            22 22222222222222  123343333 366788888889999999998887 67899999999999999999998888


Q ss_pred             HHHH
Q 013312          393 PLTA  396 (445)
Q Consensus       393 ~l~~  396 (445)
                      .+.+
T Consensus       356 ~~~~  359 (394)
T PRK11652        356 MLPQ  359 (394)
T ss_pred             HccC
Confidence            7654

>PRK15011 sugar efflux transporter B; Provisional

Probab=100.00  E-value=6.2e-32  Score=254.18  Aligned_cols=373  Identities=13%  Similarity=0.123  Sum_probs=260.4

Q ss_pred             hhhHhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhH
Q 013312            4 EKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAM   83 (445)
Q Consensus         4 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~   83 (445)
                      ++.++..+.+++..++..++..+..|.+|.+.+       ++++.+..+.|++.+...+...+.+++.|.++||+||||.
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~-------~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~dr~g~r~~   83 (393)
T PRK15011         11 KSFDLTSTAFLIVAFLTGIAGALQTPTLSIFLT-------DEVHARPAMVGFFFTGSAVIGILVSQFLAGRSDKRGDRKS   83 (393)
T ss_pred             hhccchhHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhH
Confidence            334556677788899999999999999999985       3456777889999877666555555555555999999987


Q ss_pred             h-HHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccch--hhHHHHHHHHHhhhhhhh
Q 013312           84 L-TLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQR--ASAFGILLGVLSASFVCG  160 (445)
Q Consensus        84 l-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~g~~~g  160 (445)
                      + ..+.+..+++..+.+++++   ++.+++.+.+.|. ..+...|...+++.|+.++++|  +...++.+...++|.++|
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g  159 (393)
T PRK15011         84 LIVFCCLLGVLACTLFAWNRN---YFVLLFVGVFLSS-FGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIG  159 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHH-HHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHh
Confidence            5 4566666777888888888   7777666555554 3456678889999998876655  344578888889999999


Q ss_pred             hhhhhh----hchhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCccccchhhhcccccCCCCCCcccccccccchhH
Q 013312          161 TLAARF----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIR  236 (445)
Q Consensus       161 ~~l~~~----~~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (445)
                      |.+++.    +|||..|++.++..++..+..++.+||.++++++.+               + +    . +      ..+
T Consensus       160 ~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~-~----~-~------~~~  212 (393)
T PRK15011        160 PPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMRKELPLAT---------------G-T----L-E------APR  212 (393)
T ss_pred             hHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcCccCCCCcccc---------------c-c----c-c------ccc
Confidence            988875    499999999988877777776677887643322110               0 0    0 0      000


Q ss_pred             HHHHHhhcchhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHH
Q 013312          237 DLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLL  316 (445)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  316 (445)
                            .+++..+...............+..+.|.|+++.+|+++.+.+.+........+++. ++.|+++||+++|+.+
T Consensus       213 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~-~~~G~l~dr~g~~~~~  285 (393)
T PRK15011        213 ------RNRRDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTM-LIAGYFAKRLGKRFLM  285 (393)
T ss_pred             ------cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhChHHHH
Confidence                  011222222333333334445566789999988899999999988887777777776 7889999999999987


Q ss_pred             HHHHHHHHHHHHHHHhcCCchhHHHH-HHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013312          317 SLGLFAACINMFICSISWSAWVPYAT-TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLT  395 (445)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~  395 (445)
                      ..+.....+........++.+..... .+.+++.+...+....+..|..| +++|++.++.+...++|..++|.+.|.+.
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p-~~~g~~~~~~~~~~~lg~~~g~~l~G~i~  364 (393)
T PRK15011        286 RVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGILGGIGMLYFQDLMP-GQAGSATTLYTNTSRVGWIIAGSLAGIVA  364 (393)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77666555554444444444433332 34445555555666677788887 56999999999999999999999999999


Q ss_pred             HhhhcCCCCcccchhHHHHHHHHHHHHHHHHHhcc
Q 013312          396 ALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMS  430 (445)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (445)
                      |+.       ++.. .+.+.+++.+++++..+..+
T Consensus       365 ~~~-------g~~~-~~~~~~~~~~~~~~~~~~~~  391 (393)
T PRK15011        365 EIW-------NYHA-VFWFALVMIIATLFCLLRIK  391 (393)
T ss_pred             HHh-------hhHH-HHHHHHHHHHHHHHHHHhhc
Confidence            975       3333 34556666666666666554

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.1e-32  Score=243.88  Aligned_cols=376  Identities=15%  Similarity=0.104  Sum_probs=304.5

Q ss_pred             HhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHH
Q 013312            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (445)
Q Consensus         7 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~   86 (445)
                      +|+++.-.+...+....+.+..|+.+.+.        +++++|..|.+++.++..+...+..++.|.+.||||.|++...
T Consensus        13 ~~~L~~S~~af~v~F~VW~l~s~l~~~i~--------~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~   84 (417)
T COG2223          13 RRNLWLSTLAFDVGFMVWTLFSPLGVFIK--------SDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTIL   84 (417)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhc--------cccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHH
Confidence            55666666766777777777777777773        6779999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhh----hhhhh
Q 013312           87 PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASF----VCGTL  162 (445)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~----~~g~~  162 (445)
                      +.++..+-++..+++.+.+.++++++.+++.|+ +++ ...+...++++++|||++|.++|+.. ..++|.    .++|.
T Consensus        85 s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~-~Ga-sFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~  161 (417)
T COG2223          85 SMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGL-AGA-SFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPL  161 (417)
T ss_pred             HHHHHHHHHHHHHHHccCCchHHHHHHHHHHhc-ccc-eehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHH
Confidence            999999999999999875556799999999999 544 44789999999999999999999999 777775    45677


Q ss_pred             hhhhhc---hhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCccccchhhhcccccCCCCCCcccccccccchhHHHH
Q 013312          163 AARFLS---TTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLI  239 (445)
Q Consensus       163 l~~~~~---w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (445)
                      +....+   ||..-.+..+..++..+..++...|.|+.+...++                           .. +  +..
T Consensus       162 v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~---------------------------~~-~--~~~  211 (417)
T COG2223         162 VAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKP---------------------------QL-P--AQL  211 (417)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccc---------------------------cc-h--hHH
Confidence            777777   99988888888778788888888887764332200                           00 0  234


Q ss_pred             HHhhcchhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHH
Q 013312          240 CLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLG  319 (445)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  319 (445)
                      +...++++.|.+.+.++....++.++..++|.|+++++|.++.++|.+.....+.+.+.+ .++|+++||+|.+|.+...
T Consensus       212 ~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~R-p~GG~LsDR~Gg~rv~~~~  290 (417)
T COG2223         212 KAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALAR-PLGGWLSDRIGGRRVTLAV  290 (417)
T ss_pred             HHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHH-hccchhhhhccchhHHHHH
Confidence            446778899999999999999999999999999999999999999999999999999998 8999999999999999999


Q ss_pred             HHHHHHHHHHHHhcC-------CchhHHH-HHHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHH
Q 013312          320 LFAACINMFICSISW-------SAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIF  391 (445)
Q Consensus       320 ~~~~~~~~~~~~~~~-------~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~  391 (445)
                      +..++++.....+..       +.+.... ....++..+..+...+.++...+| ++.|.+.|+...++.+|+..-|...
T Consensus       291 f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~-~~~G~v~G~vga~G~lGGf~lp~~~  369 (417)
T COG2223         291 FVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFP-KETGAVTGIVGAIGGLGGFFLPLAF  369 (417)
T ss_pred             HHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHH-hhhhHHHHHHHHhccccccchhHHH
Confidence            988888887777654       2222222 244456666667777777777776 5889999999999999999999999


Q ss_pred             HHHHHhhhcCCCCcccchhHHHHHHHHHHHHHHHHHhccCC
Q 013312          392 SPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMSHT  432 (445)
Q Consensus       392 g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (445)
                      |..++.+       +.....+.+...+.+++.+..+....+
T Consensus       370 g~~~~~t-------g~~~~~f~~~~~~~~~a~v~~~~~y~r  403 (417)
T COG2223         370 GVSLDLT-------GSYTGAFMLLLAFYLVALVLTWALYAR  403 (417)
T ss_pred             HHHHHhc-------ccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999987       333334666666677777666554443

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=100.00  E-value=1.9e-31  Score=251.36  Aligned_cols=343  Identities=16%  Similarity=0.130  Sum_probs=257.5

Q ss_pred             hhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHH
Q 013312            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP   87 (445)
Q Consensus         8 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~   87 (445)
                      |.+....+..+....+.++..+.+|.+.++        ++.+..+.++..+.+.++..+++++.|+++||+|||+.+..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~--------~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~   74 (392)
T PRK10473          3 RFLLCSFALVLLYPAGIDMYLVGLPRIAAD--------LNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPG   74 (392)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhHHHHHHH--------hCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHH
Confidence            455666777788888888999999999754        356667889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhhhh-
Q 013312           88 LTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF-  166 (445)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~-  166 (445)
                      .++.+++...+.++++   ++.+++.|+++|+ +.+...+...+++.|++|+++|+++.++.+....+|..++|.+++. 
T Consensus        75 ~~~~~i~~~~~~~~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l  150 (392)
T PRK10473         75 AALFIIASLLCSLAET---SSLFLAGRFLQGI-GAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLI  150 (392)
T ss_pred             HHHHHHHHHHHHHhCc---HHHHHHHHHHHHh-hhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999   8899999999999 8888888999999999999999999999999999999999988765 


Q ss_pred             ---hchhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCccccchhhhcccccCCCCCCcccccccccchhHHHHHHhh
Q 013312          167 ---LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLR  243 (445)
Q Consensus       167 ---~~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (445)
                         .+||+.|++.+++.++..++..+.+||++++++++                         + .+   ..++..+ ..
T Consensus       151 ~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-------------------------~-~~---~~~~~~~-~~  200 (392)
T PRK10473        151 MLKFPWQSLFYTMAAMGILVLLLSLFILKETRPARAPA-------------------------A-SS---KPRENSE-SL  200 (392)
T ss_pred             HhCcChHHHHHHHHHHHHHHHHHHHHHcCCCCCcccCC-------------------------c-cc---hHHHHHH-HH
Confidence               48999999998887777776667777764322110                         0 00   0111112 23


Q ss_pred             cchhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHH
Q 013312          244 SSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAA  323 (445)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  323 (445)
                      +++.++...+...+.......+..+.|.+.++.+|+++.+.+......++..+++. +..+++.||+++|+.+..+..+.
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~-~~~~~l~~r~g~~~~~~~~~~~~  279 (392)
T PRK10473        201 LNRFFLSRLVITTLSVTVILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVS-FSTPFALGIFKPRTLMLTSQVLF  279 (392)
T ss_pred             hCHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCHHHHHHHHHHHH
Confidence            44544444444433333444556667888888889999999999999999999988 77799999999999998888888


Q ss_pred             HHHHHHHHhcCCchhHHH-HHHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013312          324 CINMFICSISWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALF  398 (445)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~  398 (445)
                      .++.+.+...++.+.... ..+.+.+.+...+..  ...+..|.++|+   |..+....++..+++.+.+++.++.
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~--~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~  350 (392)
T PRK10473        280 LAAGITLALSPSHAVSLFGITLICAGFSVGFGVA--MSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVL  350 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH--HHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            777777666554443222 233344444333333  223344544443   4444556678888888888888876

>TIGR00898 2A0119 cation transport protein

Probab=100.00  E-value=1.2e-32  Score=268.26  Aligned_cols=364  Identities=17%  Similarity=0.157  Sum_probs=258.5

Q ss_pred             cchhhH---HHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHhhhc
Q 013312           44 DECSLA---IYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMV  120 (445)
Q Consensus        44 ~~~~~s---~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~  120 (445)
                      +|++++   ..+.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.++.+++++   ++.+++.|++.|+ 
T Consensus       117 ~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~r~l~G~-  192 (505)
T TIGR00898       117 TEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPN---YTVFLVFRLLVGM-  192 (505)
T ss_pred             EEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHccc---HHHHHHHHHHHHh-
Confidence            566777   788999999999999999999999999999999999999999999999999999   9999999999999 


Q ss_pred             cchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhhhhh-chhhHHHHHHHHHHHHHHHHHHhccCCCCCCC
Q 013312          121 CEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL-STTSAFQAATIVSMLAAAYMRVFLKDDVPNDD  199 (445)
Q Consensus       121 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~-~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~  199 (445)
                      +.+...+...+++.|++|+++|+++.++......+|.+++|.++..+ +||+.|++.+++.++..+.. +.+||+|+...
T Consensus       193 ~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~-~~~~esp~~l~  271 (505)
T TIGR00898       193 GIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPDWRWLQLAVSLPTFLFFLLS-WFVPESPRWLI  271 (505)
T ss_pred             hccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-HhcCCChHHHH
Confidence            88888899999999999999999999999999999999999988764 79999999998877665554 77899876432


Q ss_pred             CcCCcc---ccchhhhcccccCCCCC---Cc-cc--ccccccchhHHHHHHhhcchhhHHHHHHHHHHHhhhhhhHHHHH
Q 013312          200 DDDLTR---PIITEETEGVNQNESNS---PV-KI--PVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFL  270 (445)
Q Consensus       200 ~~~~~~---~~~~~~~~~~~~~~~~~---~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (445)
                      .+++.+   +..++..+.++.+...+   .. .+  ...+++...+    .++++|.++...+...+..+.........+
T Consensus       272 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (505)
T TIGR00898       272 SQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFL----DLFRTPNLRKTTLCLMMLWFTTAFSYYGLV  347 (505)
T ss_pred             HCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHH----HHhCChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            222211   11111111111100000   00 00  0001111222    345666666555554444433333333334


Q ss_pred             HHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHhcCCc--hhHHH-HHHHHh
Q 013312          271 YFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSA--WVPYA-TTAFSV  347 (445)
Q Consensus       271 ~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~g~  347 (445)
                      .+..+ .+.+...   .....++..+++. ++.+++.||+|||+.+..+.++.+++.+.+.+.++.  +.... ..+.++
T Consensus       348 ~~~~~-~~~~~~~---~~~~~~~~~i~~~-~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  422 (505)
T TIGR00898       348 LDLGN-LGGNIYL---DLFISGLVELPAK-LITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKF  422 (505)
T ss_pred             ccccc-cCCChHH---HHHHHHHHHHHHH-HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Confidence            44433 4555433   2334456666666 777899999999999999988888887777766543  33322 344556


Q ss_pred             hhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccchhHHHHHHHHHHHHHHHHH
Q 013312          348 LVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSL  427 (445)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (445)
                      +.+..++..+.+.+|.+|++.|+++.|+.+....+|++++|.+.+ +.+..         ...++.+.+++.+++.+...
T Consensus       423 ~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~~~---------~~~~~~~~~~~~~~~~~~~~  492 (505)
T TIGR00898       423 GITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LGEKW---------LFLPLVLFGGLALLAGILTL  492 (505)
T ss_pred             HHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHHHH---------HhhHHHHHHHHHHHHHHHHH
Confidence            677778888999999999999999999999999999999999988 43321         12234555556666655555


Q ss_pred             hccC
Q 013312          428 MMSH  431 (445)
Q Consensus       428 ~~~~  431 (445)
                      .+++
T Consensus       493 ~lpe  496 (505)
T TIGR00898       493 FLPE  496 (505)
T ss_pred             cCcC
Confidence            5543

>PRK03893 putative sialic acid transporter; Provisional

Probab=100.00  E-value=5.7e-32  Score=263.06  Aligned_cols=368  Identities=14%  Similarity=0.162  Sum_probs=258.8

Q ss_pred             HhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHH
Q 013312            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (445)
Q Consensus         7 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~   86 (445)
                      ++.+..+++..++..++.....+.+|.+.++        ++.+..+.+++.+.+.++..++.++.|+++||+|||+.+..
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--------~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~   90 (496)
T PRK03893         19 WKAFSAAWLGYLLDGFDFVLITLVLTEVQGE--------FGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVI   90 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence            3466677888888899999999999888643        46677888999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhhhh
Q 013312           87 PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF  166 (445)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~  166 (445)
                      +.++.+++.++++++++   ++.+++.|++.|+ +.+...+...+++.|.+|+++|+++++.......+|..++|.+++.
T Consensus        91 ~~~~~~~~~~~~~~~~~---~~~l~~~~~l~G~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~  166 (496)
T PRK03893         91 SIVLFSVGTLACGFAPG---YWTLFIARLVIGM-GMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSL  166 (496)
T ss_pred             HHHHHHHHHHHHHHHhH---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999   9999999999999 8888888999999999999999999999999999999999988765


Q ss_pred             ----hchhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCccccchhhhcccccCCCCCCcccccccccchhH------
Q 013312          167 ----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIR------  236 (445)
Q Consensus       167 ----~~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  236 (445)
                          .+||+.|++..+..+ ..+.....+||+++.++++++.++..+..+..     .     ....+......      
T Consensus       167 l~~~~~w~~~f~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-----~-----~~~~~~~~~~~~~~~~~  235 (496)
T PRK03893        167 VVPVWGWRALFFIGILPII-FALWLRKNLPEAEDWKEKHAGKAPVRTMVDIL-----Y-----RGEHRIINILLTLAAAA  235 (496)
T ss_pred             HhccCCHHHHHHHHHHHHH-HHHHHHHhCCCchhhhhhccccccchhHHHHH-----h-----cchhHHHHHHHHHHHHH
Confidence                489999987654433 23333345565433211110000000000000     0     00000000000      


Q ss_pred             ---HHHHH--------------------------h-hcchhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHH
Q 013312          237 ---DLICL--------------------------L-RSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFAD  286 (445)
Q Consensus       237 ---~~~~~--------------------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~  286 (445)
                         .....                          . .+.+.........+...........++|.|+++.+|+++.+.+.
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~  315 (496)
T PRK03893        236 ALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVAN  315 (496)
T ss_pred             HHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHH
Confidence               00000                          0 00000111111111111111234678999998778999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHhcCCc--hhHHHH-HHHHhhhhhhhhhHHHHHhcc
Q 013312          287 LMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSA--WVPYAT-TAFSVLVVFATPSFRSIVSKQ  363 (445)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~g~~~~~~~~~~~~~~~~~  363 (445)
                      +.+...++.+++. +..+++.||+++|+.+..+..+..+..+......+.  +..... .+.+.......+...++++|.
T Consensus       316 ~~~~~~~~~~~g~-~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (496)
T PRK03893        316 VLFFSGFGAAVGC-CVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGISGLLPKLIGGY  394 (496)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhcccchhhHHHHHhh
Confidence            9999999999988 788999999999998887776666555443333222  222222 222233333456667788999


Q ss_pred             cCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013312          364 VGPNEQGKAQGCISGISSFANIVSPLIFSPLTALF  398 (445)
Q Consensus       364 ~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~  398 (445)
                      +|+++||+++|+.+....+|..++|.+.|.+.|++
T Consensus       395 ~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~  429 (496)
T PRK03893        395 FDTEQRAAGLGFTYNVGALGGALAPILGALIAQRL  429 (496)
T ss_pred             CCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccC
Confidence            99999999999999999999999999999999876

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=100.00  E-value=1.2e-31  Score=251.18  Aligned_cols=363  Identities=12%  Similarity=-0.009  Sum_probs=275.8

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHHH-
Q 013312           10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL-   88 (445)
Q Consensus        10 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~-   88 (445)
                      .+.+.+..+..+.+.++..|.+|.+.+|        .+.+..++|++.+++.+...++++++|+++||+|||+...... 
T Consensus         6 ~~~l~~~~~~~~~~~~~~~p~l~~~l~~--------~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~   77 (382)
T TIGR00902         6 FRWLALGFFGYFCAYGIFLPFFPAWLKG--------IGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLA   77 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            3456777888888899999999999864        4677789999999999999999999999999999854332211 


Q ss_pred             HHHHHH-HHHHHhhcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhhhh-
Q 013312           89 TLSIIP-LAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF-  166 (445)
Q Consensus        89 ~~~~~~-~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~-  166 (445)
                      ....+. ...+..+++   ++.+++.|.++|. +.+...|...++..|+  +++|+++++......++|.++||.+++. 
T Consensus        78 ~~~~l~~~~~~~~~~~---~~~l~~~~~l~~~-~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l  151 (382)
T TIGR00902        78 LASAIFAAAFSAGAHN---AWLLFIAIGLFAL-FFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGL  151 (382)
T ss_pred             HHHHHHHHHHHHhhhh---HHHHHHHHHHHHH-HHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHH
Confidence            111111 123446777   8999999999998 6666778888887664  4788999999999999999999988776 


Q ss_pred             ---hchhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCccccchhhhcccccCCCCCCcccccccccchhHHHHHHhh
Q 013312          167 ---LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLR  243 (445)
Q Consensus       167 ---~~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (445)
                         +|||..|++...... ..+.. +.++|+++++++++                       +++.+   ..++ .+...
T Consensus       152 ~~~~g~~~~f~~~~~~~~-~~~~~-~~~~~~~~~~~~~~-----------------------~~~~~---~~~~-~~~~l  202 (382)
T TIGR00902       152 IGMFDEQNILAILTAGLA-FMLIG-FLIKPTIPPKDAIP-----------------------EDESQ---GDSA-FIALL  202 (382)
T ss_pred             HHHcChhHHHHHHHHHHH-HHHHH-HHcCCCCCCCcccc-----------------------ccccc---cchh-HHHHH
Confidence               499999988765532 22222 33444322111110                       00000   1112 22245


Q ss_pred             cchhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHH
Q 013312          244 SSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAA  323 (445)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  323 (445)
                      |+|+++...+..++.......+..+.|.|+++ .|.++.+.|.......+..++.. ...+++.||+++|+.+..+.+..
T Consensus       203 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~-~~~~~l~~r~g~~~~l~~~~~~~  280 (382)
T TIGR00902       203 KNPMNLRFLAAVCLIQGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIF-AFSNKLFQNCSARDLLLISAIAC  280 (382)
T ss_pred             cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHH-HHhHHHHhhCCHHHHHHHHHHHH
Confidence            77888888888888888888889999999987 79999999999998888887776 88899999999999999999999


Q ss_pred             HHHHHHHHhcCCchhHHHH-HHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHH-HHHHHHHHHHHHHHHHHHhhhcC
Q 013312          324 CINMFICSISWSAWVPYAT-TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISG-ISSFANIVSPLIFSPLTALFLSK  401 (445)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~-~~~~g~~i~~~~~g~l~~~~~~~  401 (445)
                      .+....+.+.++.+.++.. .+.++..+...+....++++. |++++++.+++++. ...+|..++|.+.|+++|+.   
T Consensus       281 ~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~---  356 (382)
T TIGR00902       281 VGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTL---  356 (382)
T ss_pred             HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence            9999998888887766654 888999999999999999988 99999999999874 56799999999999999986   


Q ss_pred             CCCcccchhHHHHHHHHHHHHHHHHH
Q 013312          402 GAPFNFPGFSIMCIGLASMVAFIQSL  427 (445)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (445)
                          +. . .+...+.+.+++.+...
T Consensus       357 ----g~-~-~~~~~~~~~~~~~~~~~  376 (382)
T TIGR00902       357 ----GA-G-TFVFMAIIAAAAFFLIP  376 (382)
T ss_pred             ----cH-H-HHHHHHHHHHHHHHHHH
Confidence                32 2 35556666666554433

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=100.00  E-value=9.3e-32  Score=258.31  Aligned_cols=377  Identities=12%  Similarity=0.064  Sum_probs=252.0

Q ss_pred             hhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHH
Q 013312            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP   87 (445)
Q Consensus         8 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~   87 (445)
                      +.+...+...+....+.....|.+|.+.+|        ++++..+.|++.+.+.+++.+++++.|+++||+|||+++..+
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--------~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~  107 (476)
T PLN00028         36 RAFHLSWISFFTCFVSTFAAAPLLPIIRDN--------LNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFL  107 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHH
Confidence            344555556666666667777888888643        466677889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhh---
Q 013312           88 LTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAA---  164 (445)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~---  164 (445)
                      .++.+++.++++++++   ++.+++.|++.|+ +.+... ....+++|++|+++|++++++.....++|..+++.+.   
T Consensus       108 ~~~~~~~~~~~~~~~s---~~~l~~~r~l~G~-~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i  182 (476)
T PLN00028        108 LMLTAPAVFCMSLVSS---ATGFIAVRFFIGF-SLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLV  182 (476)
T ss_pred             HHHHHHHHHHHHHhcC---HHHHHHHHHHHHH-HHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999   8999999999999 666543 4567899999999999999999876666666554332   


Q ss_pred             -h---------hhchhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCccccchhhhcccccCCCCCCcccccccccch
Q 013312          165 -R---------FLSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPS  234 (445)
Q Consensus       165 -~---------~~~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (445)
                       .         ..+||+.|++.+++.++..+...+..++.|+.+.++         ..    ++.+    .     ++.+
T Consensus       183 ~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~~~~~~---------~~----~~~~----~-----~~~~  240 (476)
T PLN00028        183 FPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPDGNYRE---------LK----KSGT----M-----PKDS  240 (476)
T ss_pred             HHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCCCchhh---------HH----hcCc----c-----cccc
Confidence             2         148999999999888776665544443333211000         00    0000    0     0001


Q ss_pred             hHHHHHHhhcchhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchh
Q 013312          235 IRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAK  314 (445)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  314 (445)
                      ..+.++...+++..+...+..+...........+.|.|+.+.+|+++.+.+.+.+...++.+++. ++.|+++||+++|+
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~-~~~G~lsDr~~~r~  319 (476)
T PLN00028        241 FSKVLRYGVTNYRTWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFAR-PAGGYLSDVAARRF  319 (476)
T ss_pred             HHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHhc
Confidence            11222333455666655555555555555667789999988889999999999999999999998 88899999998651


Q ss_pred             -------HHHHHHHHHHHHHHHHHhcCCchhHHH-HHHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHH
Q 013312          315 -------LLSLGLFAACINMFICSISWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIV  386 (445)
Q Consensus       315 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i  386 (445)
                             .......+..+..+.+...++.+.... ..+++++.+...+...++..+.. ++++|++.|+.+...++|+.+
T Consensus       320 ~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~g~lg~~i  398 (476)
T PLN00028        320 GMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVVMILFSIFVQAACGATFGIVPFVS-RRSLGVISGLTGAGGNVGAVL  398 (476)
T ss_pred             CcchhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhhhhcccCcccC-hhhchhhhhhhhccccHHHHH
Confidence                   222333333333333333444333222 34455555555555666666654 478999999987766666666


Q ss_pred             HHHHHHHHHHhhhcCCCCcccchhHHHHHHHHHHHHHHHHHhcc
Q 013312          387 SPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMS  430 (445)
Q Consensus       387 ~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (445)
                      +|.+    .+.. + ..  ++.. .+.+.+++.+++.+..+..+
T Consensus       399 ~~~l----~~~~-~-~~--~y~~-~f~~~~~~~~i~~~~~~~~~  433 (476)
T PLN00028        399 TQLL----FFTG-S-SY--STET-GISLMGVMIIACTLPVAFIH  433 (476)
T ss_pred             HHHH----HHhc-C-Cc--cHhh-HHHHHHHHHHHHHHHHHhee
Confidence            6554    3321 0 00  1222 35555666666666665554

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=100.00  E-value=2.9e-32  Score=262.53  Aligned_cols=400  Identities=11%  Similarity=0.032  Sum_probs=274.2

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhHHHHHHHhc--------------CCCCcchhhHHHHHHHHHHHHHHHHHHhhhhcccc
Q 013312            9 TLSHLFVTVFLWGFATMMVVPAITDVTMMAL--------------CPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNL   74 (445)
Q Consensus         9 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l   74 (445)
                      ....++++..+.+.+........+...++.-              +....|++.+..+.|++.+.+.+++.+++++.|++
T Consensus        20 i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l   99 (465)
T TIGR00894        20 LSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQIIIQIPVGYL   99 (465)
T ss_pred             HHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHHHHcchHHH
Confidence            3444455555666666555555554443110              00112678899999999999999999999999999


Q ss_pred             ccccCchhHhHHHHHHHHHHHHHHHhh--cCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHH
Q 013312           75 SDQYGRKAMLTLPLTLSIIPLAILAYR--RSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGV  152 (445)
Q Consensus        75 ~Dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~  152 (445)
                      +||+|||+++..+.++.+++.+++.++  .+   ++.+++.|+++|+ +.+...|....++.|++|+++|++++++...+
T Consensus       100 ~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~---~~~l~~~r~~~G~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  175 (465)
T TIGR00894       100 AGKYVFKWSIGIGMFLSSVISIVIPWAAGGG---IALVVFCRVIQGL-AQGSVSPATHKIIVKWAPPKERSRLLGMSTSG  175 (465)
T ss_pred             HHHhCcchhhHHHHHHHHHHHHHHHHHHHcC---chHHHHHHHHHHH-hcccchhhHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            999999999999999999998887554  55   7789999999999 88999999999999999999999999999999


Q ss_pred             Hhhhhhhhhhhhhh----h-chhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCccccchhhhcccccCCCCCCcccc
Q 013312          153 LSASFVCGTLAARF----L-STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIP  227 (445)
Q Consensus       153 ~~~g~~~g~~l~~~----~-~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (445)
                      ..+|..++|.+++.    . +||+.|++.+++.++..+..+...+|+|+++++.++.+  .+..++.  .+++.     .
T Consensus       176 ~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~--~~~i~~~--~~~~~-----~  246 (465)
T TIGR00894       176 FQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCISKFE--KKYINSS--LQGQK-----G  246 (465)
T ss_pred             HHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCCCCCHHH--HHHHHhh--ccccc-----C
Confidence            99999999888765    2 89999999998877766666566666654332211110  0000000  00000     0


Q ss_pred             cccccchhHHHHHHhhcchhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 013312          228 VCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLA  307 (445)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~  307 (445)
                      +.+.+.++++    ..+++.++...+..+......+.+.+++|.|+++.+|++..+.++..+...++..++. ++.|+++
T Consensus       247 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~-~~~g~l~  321 (465)
T TIGR00894       247 STRQSLPIKA----IPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCS-IFAGYLA  321 (465)
T ss_pred             CCCCCCCHHH----HhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHH-HHHHHHH
Confidence            0111123333    5677888888888888888888889999999999999999999999999999999988 7889999


Q ss_pred             hhhcchhH--------HHHHHHHH--HHHHHHHHh-cCCchhHHHH-HHHHhhhhhhhhhHHHHHhcccCCccchhHHHH
Q 013312          308 PILGEAKL--------LSLGLFAA--CINMFICSI-SWSAWVPYAT-TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGC  375 (445)
Q Consensus       308 ~~~~~~~~--------~~~~~~~~--~~~~~~~~~-~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~  375 (445)
                      ||+++|+.        +..+....  .+....... ..+.+..... .+.+.+.+...+.......|..| +.+|.+.|+
T Consensus       322 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~  400 (465)
T TIGR00894       322 DFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAP-RFLGFIKGI  400 (465)
T ss_pred             HHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcCh-hHHHHHHHH
Confidence            98764421        11111111  111111222 2223322222 33334444444555555566666 589999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccchhHHHHHHHHHHHHHHHHHhccCC
Q 013312          376 ISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMSHT  432 (445)
Q Consensus       376 ~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (445)
                      .+..+.+++.++|.+.|.+.+.. +.    +.....+.+.++..+++.+......+.
T Consensus       401 ~~~~~~l~~~i~p~l~g~~~~~~-~~----~~~~~~f~~~~~~~~i~~i~~~~~~~~  452 (465)
T TIGR00894       401 TGLPGFIGGLIASTLAGNILSQD-SK----NVWLIVFLIMAFVNILCVIFYLIFGSA  452 (465)
T ss_pred             HHHHHHHHHHHHHHhhheeeCCC-Cc----hHHHHHHHHHHHHHHHHHHHeeeeecc
Confidence            99999999999999999887642 00    112234566666666666655544433

>PRK11043 putative transporter; Provisional

Probab=100.00  E-value=9.4e-31  Score=247.41  Aligned_cols=340  Identities=16%  Similarity=0.090  Sum_probs=255.6

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHHHH
Q 013312           10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLT   89 (445)
Q Consensus        10 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~   89 (445)
                      +........+..++.+++.|.+|.+.++        ++.+..+.|++.+++.++..++++++|+++||+|||+++..+..
T Consensus         8 ~~~~~~~~~~~~~~~~~~~p~~~~i~~~--------~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~   79 (401)
T PRK11043          8 LVYLAGLSMLGFLATDMYLPAFKAIQAD--------LQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLS   79 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHH--------HCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHH
Confidence            3444445666777888889998888643        46677889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhhhh---
Q 013312           90 LSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF---  166 (445)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~---  166 (445)
                      +..++.+++.++++   ++.+++.|+++|+ +.+...+...+++.|++|++++++..+.......+|..++|.+++.   
T Consensus        80 ~~~~~~~~~~~~~~---~~~l~~~~~l~G~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~  155 (401)
T PRK11043         80 LFALGSLGMLWVES---AAQLLVLRFVQAV-GVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLN  155 (401)
T ss_pred             HHHHHHHHHHHhcC---HHHHHHHHHHHHh-hhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999   9999999999999 7777777888999999999999999999888888888888887765   


Q ss_pred             -hchhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCccccchhhhcccccCCCCCCcccccccccchhHHHHHHhhcc
Q 013312          167 -LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSS  245 (445)
Q Consensus       167 -~~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (445)
                       .+||+.|++.+++.++..+.. +.++|++++++++                            +++   ++ .+...++
T Consensus       156 ~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----------------------------~~~---~~-~~~~~~~  202 (401)
T PRK11043        156 HFGWQAIFATLFAITLLLILPT-LRLKPSKKARKQS----------------------------QDA---LT-FKQLLKS  202 (401)
T ss_pred             cCChHHHHHHHHHHHHHHHHHH-HHcCCCCCccccc----------------------------hHH---HH-HHHHHcC
Confidence             599999998887776665544 3455433211110                            000   11 2223455


Q ss_pred             hhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHH
Q 013312          246 VTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACI  325 (445)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  325 (445)
                      |.++...+..............+.|.+.++ .|+++.+.|.......++..++. +..+++.||+++|+..........+
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~g~~~~~~~~~~~~g~-~~~~~l~~r~~~~~~~~~~~~~~~~  280 (401)
T PRK11043        203 KTYLGNVLIFAACSAAFFAWLTGSPFILEQ-MGYSPADIGLSYVPQTIAFLVGG-YGCRAALQKWGGEQLLPWLLVLFAV  280 (401)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhHHHHHH-cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCHHHHHHHHHHHHHH
Confidence            555544444444445556667788988876 79999999988887778888887 7778999999988866555444443


Q ss_pred             HHHH---HHh--cCCchhHHH-HHHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013312          326 NMFI---CSI--SWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTAL  397 (445)
Q Consensus       326 ~~~~---~~~--~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~  397 (445)
                      +...   ...  .++.+.... ..+.+++.+..++...+...+..| +++|++.|+.+..+..+...++.+.|.+.+.
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~  357 (401)
T PRK11043        281 SVIAIWLASLLSHPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALIST  357 (401)
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            3322   222  223332222 355677788888888888777776 6899999999999999999999999988763

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=100.00  E-value=7.3e-31  Score=244.03  Aligned_cols=367  Identities=14%  Similarity=0.098  Sum_probs=268.8

Q ss_pred             HhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHH
Q 013312            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (445)
Q Consensus         7 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~   86 (445)
                      +|.++...+..++......+..|+.+.+.+       .+++++..+.+++.+++.+++.+..++.|++.||+|.|+++.+
T Consensus        33 ~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~-------~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~  105 (462)
T PRK15034         33 RRNLWISVSCLLLAFCVWMLFSAVTVNLNK-------IGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVF  105 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHH
Confidence            367777777778888888888888887754       3568888999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhh-----cCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhh-
Q 013312           87 PLTLSIIPLAILAYR-----RSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCG-  160 (445)
Q Consensus        87 ~~~~~~~~~~~~~~~-----~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g-  160 (445)
                      +.++.++..+..+++     ++   ++.+++.|++.|+ + +..++.....+++++|+++||+++|+.....++|..++ 
T Consensus       106 ~~ll~~i~~~~~~~a~~~~~~s---~~~lli~r~l~Gi-g-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~  180 (462)
T PRK15034        106 STAILIIPCVWLGIAVQNPNTP---FGIFIVIALLCGF-A-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQ  180 (462)
T ss_pred             HHHHHHHHHHHHHHHHcccCCC---HHHHHHHHHHHHH-H-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHH
Confidence            999999999999987     67   9999999999999 6 55778999999999999999999999976666666543 


Q ss_pred             ---hhhhh------------------hhchhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCccccchhhhcccccCC
Q 013312          161 ---TLAAR------------------FLSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNE  219 (445)
Q Consensus       161 ---~~l~~------------------~~~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (445)
                         |.+..                  ..+||...++..++.++..++.++..++.++. +.                   
T Consensus       181 ~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~~-~~-------------------  240 (462)
T PRK15034        181 LVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIASS-RA-------------------  240 (462)
T ss_pred             HHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCcccc-cc-------------------
Confidence               43221                  22377777777777666666666655543321 11                   


Q ss_pred             CCCCcccccccccchhHHHHHHhhcchhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHH
Q 013312          220 SNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQ  299 (445)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~  299 (445)
                                    +.++..+ ..|+|..|...+..++....+.++..++|.|.++.+  +............+...+..
T Consensus       241 --------------~~~~~~~-vlk~~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~--~~~~~l~~~~l~~l~~~l~r  303 (462)
T PRK15034        241 --------------SIADQLP-VLQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKTQF--PDVNILRLAFFGPFIGAIAR  303 (462)
T ss_pred             --------------CHHHHHH-HhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ChHHHHHHHHHHHHHHHHHH
Confidence                          2244333 457778888888888888888888889999998855  33333323344456666777


Q ss_pred             HHHHHHhhhhhcchhHHHHHHHHHHHHHHHHH-hcC-----CchhHHHH-HHHHhhhhhhhhhHHHHHhcccCC------
Q 013312          300 LLFMPLLAPILGEAKLLSLGLFAACINMFICS-ISW-----SAWVPYAT-TAFSVLVVFATPSFRSIVSKQVGP------  366 (445)
Q Consensus       300 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~------  366 (445)
                       +++|+++||+|+++++..+.+...+....+. ..+     +.+..... +...++.+..+...+.++.+.+|+      
T Consensus       304 -plgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~  382 (462)
T PRK15034        304 -SVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRV  382 (462)
T ss_pred             -HhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcc
Confidence             7889999999999999888876666553322 222     12222222 223355555666666666666653      


Q ss_pred             ---------------ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccchhHHHHHHHHHHHHHHHHHhcc
Q 013312          367 ---------------NEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMS  430 (445)
Q Consensus       367 ---------------~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (445)
                                     ++.|.+.|+....+.+|+++-|.+.|...+..+       .....+....+..+++....+...
T Consensus       383 ~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g-------~~~~~~~~~~~~~~~~~~~~w~~y  454 (462)
T PRK15034        383 KMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTG-------SPVGAMKVFLIFYIVCVLLTWLVY  454 (462)
T ss_pred             cccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcC-------CcHHHHHHHHHHHHHHHHHHHHHh
Confidence                           157899999999999999999999999998873       333345555556666666655443

>PRK09528 lacY galactoside permease; Reviewed

Probab=100.00  E-value=1.1e-31  Score=255.16  Aligned_cols=380  Identities=11%  Similarity=0.042  Sum_probs=257.4

Q ss_pred             HhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHH
Q 013312            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (445)
Q Consensus         7 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~   86 (445)
                      ++.++.+.+..++..++.+...|.+|.+.++       +++.+..+.|++.+.+.++..+++++.|+++||+|||+++.+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~   81 (420)
T PRK09528          9 NPNYWIFSLFFFFFFFIWSSWFSFFPIWLHD-------INGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLW   81 (420)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence            4667777888888999889999999999864       457788899999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHHH---hhcCc--chhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhh
Q 013312           87 PLTLSIIPLAILA---YRRSI--SFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGT  161 (445)
Q Consensus        87 ~~~~~~~~~~~~~---~~~~~--~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~  161 (445)
                      +..+.++......   .++..  ......++.++..|. +.....+....+..+.  ++++++.++......++|..++|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~g~~~g~~~~~~~~g~~i~~  158 (420)
T PRK09528         82 IISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGF-GFLAGAGAIEAYIERV--SRRSGFEYGRARMWGSLGWALCA  158 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhccchhhhhhHHHHH--HhhccccchhhHHhhhHHHHHHH
Confidence            7666555433221   11110  001112333444443 2222233333333222  24567788888888899999999


Q ss_pred             hhhhhh---chhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCccccchhhhcccccCCCCCCcccccccccchhHHH
Q 013312          162 LAARFL---STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDL  238 (445)
Q Consensus       162 ~l~~~~---~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (445)
                      .+++.+   +|+++|++.+++.++..+..++..||++++.+.+ +              +++ +      ++++.+.++.
T Consensus       159 ~~~g~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--------------~~~-~------~~~~~~~~~~  216 (420)
T PRK09528        159 FIAGILFNINPQINFWLGSGSALILLVLLFFAKPDAPSTAKVA-N--------------ALG-A------NASAVSLKDA  216 (420)
T ss_pred             HHHHHHHhcCchHhHHHHHHHHHHHHHHHhcccccccchhhhc-c--------------chh-c------ccccccHHHH
Confidence            988875   8999999988777666555544444432211110 0              000 0      0011123333


Q ss_pred             HHHhhcchhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhc---CCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhH
Q 013312          239 ICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQF---HFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKL  315 (445)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  315 (445)
                      .+ ..++|.++...+..+...........+.|.|+.+.+   +.+..+.|.+.+...+...++. +..+++.||+++|+.
T Consensus       217 ~~-~l~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~g~l~dr~g~~~~  294 (420)
T PRK09528        217 LA-LLKLPKFWFLVLYVIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIM-FFAPFIINRIGAKNA  294 (420)
T ss_pred             HH-HccCCCeEeehHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCcchh
Confidence            33 345666655555444444444455556777776543   5666778899998888888887 788999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCchhHHHH-HHHHhhhhhhhhhHHHHHhcccCCccchhHHHH-HHHHHHHHHHHHHHHHHH
Q 013312          316 LSLGLFAACINMFICSISWSAWVPYAT-TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGC-ISGISSFANIVSPLIFSP  393 (445)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~-~~~~~~~g~~i~~~~~g~  393 (445)
                      +..+..+..++..++.+.++.+.++.. .+.+++.+...+....++.+..|++.+++..+. .++...+|..++|.+.|+
T Consensus       295 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~  374 (420)
T PRK09528        295 LLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGN  374 (420)
T ss_pred             hHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHH
Confidence            988888888888888877777765553 555667766677777888999999999988766 677889999999999999


Q ss_pred             HHHhhhcCCCCcccchhHHHHHHHHHHHHHHHHHh
Q 013312          394 LTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLM  428 (445)
Q Consensus       394 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (445)
                      +.|..       ++.. .+...+++.++.....+.
T Consensus       375 l~~~~-------G~~~-~f~~~~~~~~i~~~~~~~  401 (420)
T PRK09528        375 LYDSI-------GFQG-TYLILGGIVLLFTLISVF  401 (420)
T ss_pred             HHHhh-------CchH-HHHHHHHHHHHHHHHHHH
Confidence            99986       3333 345444454444444433

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=100.00  E-value=3.8e-32  Score=259.70  Aligned_cols=343  Identities=11%  Similarity=0.052  Sum_probs=248.6

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHHHHHHHHHHHHHHhhcCcchhHHHHH-HHHHhhhccc
Q 013312           44 DECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYA-LRTLTAMVCE  122 (445)
Q Consensus        44 ~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~r~l~G~~~~  122 (445)
                      ++++.+..+.+++.+.+.++..++.++.|+++||+|||++++.+.++.+++.++++++++   ++.+++ .|++.|+ +.
T Consensus        47 ~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~l~G~-~~  122 (455)
T TIGR00892        47 QIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSN---VIELYLTAGFITGL-GL  122 (455)
T ss_pred             HHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHh-cc
Confidence            445777788999999999999999999999999999999999999999999999999998   777765 5799999 77


Q ss_pred             hhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhhhh----hchhhHHHHHHHHHHHHHHHHHHhccCCCCCC
Q 013312          123 GSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPND  198 (445)
Q Consensus       123 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~----~~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~  198 (445)
                      +...+...+++.++++ ++|+++.++.+.+..+|..++|.+++.    .+||+.|++.+++.++..+..++..|+.+.++
T Consensus       123 ~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~~  201 (455)
T TIGR00892       123 AFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGALMRPVGPSQR  201 (455)
T ss_pred             hhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCCCCcccc
Confidence            7666677788899986 799999999999999999888887765    49999999999887665554444434322111


Q ss_pred             CCcCCccccchhhhcccccCCCCCCcccccccccchhHHHHHHhhcchhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcC
Q 013312          199 DDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFH  278 (445)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  278 (445)
                      ..+.+.++   ... .+...++..  .....++..+..+ ++ ..++|.++......++..........++|.|.++ .|
T Consensus       202 ~~~~~~~~---~~~-~~~~~~~~~--~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~-~g  272 (455)
T TIGR00892       202 VSKSKSKE---GLP-PDGSTKKLS--KKSTAEKINRFLD-FS-LFTHRGFLVYLSGNVIMFLGFFAPIIFLVPYAKD-KG  272 (455)
T ss_pred             cccccccc---cCC-CCCcccccc--ccchhhhhhhhcc-hH-HhcCchHHHHHHHHHHHHHHccchHHHHHHHHHH-cC
Confidence            10000000   000 000000000  0000000001111 12 4466777777777777777777778899999987 79


Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHhhhhh--cchhHHH--HHHHHHHHHHHHHHhcCCchhHHH-HHHHHhhhhhhh
Q 013312          279 FNKNQFADLMLIAGLAGTISQLLFMPLLAPIL--GEAKLLS--LGLFAACINMFICSISWSAWVPYA-TTAFSVLVVFAT  353 (445)
Q Consensus       279 ~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~  353 (445)
                      +++.+.+...+..+++.++++ +..+++.||.  ++++...  .+.....++.+.....++.+.++. ..+.|++.+...
T Consensus       273 ~s~~~~g~~~~~~~~~~~~~~-~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~  351 (455)
T TIGR00892       273 VDEYEAAFLLSIIGFVDIFAR-PSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVG  351 (455)
T ss_pred             CCHHHHHHHHHHHHHHHHHHH-HHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchHH
Confidence            999999999999999998888 7778999873  3343332  233333444444455556555444 467788888888


Q ss_pred             hhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 013312          354 PSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSK  401 (445)
Q Consensus       354 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~  401 (445)
                      +...+.+.|.+|++++++++|+++...++|++++|.+.|.+.|..+++
T Consensus       352 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~  399 (455)
T TIGR00892       352 ALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNY  399 (455)
T ss_pred             HHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCc
Confidence            999999999999999999999999999999999999999999976333

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=100.00  E-value=7.9e-31  Score=246.06  Aligned_cols=329  Identities=14%  Similarity=0.161  Sum_probs=246.8

Q ss_pred             HHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHHHHHHHHHHHHHHh
Q 013312           21 GFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAY  100 (445)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~  100 (445)
                      .++..+..|.+|.+.++        ++.+..+.|++.+++.++..++.++.|+++||+|||+++..+.++.+++...+.+
T Consensus         4 ~~~~~~~~p~~~~~~~~--------~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~   75 (377)
T PRK11102          4 PLAIDMYLPALPVIAAD--------FGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACAL   75 (377)
T ss_pred             chHHHHHhccHHHHHHH--------hCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHH
Confidence            35667888999999754        4667788999999999999999999999999999999999999999999999999


Q ss_pred             hcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhhhh----hchhhHHHHH
Q 013312          101 RRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF----LSTTSAFQAA  176 (445)
Q Consensus       101 ~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~----~~w~~~f~~~  176 (445)
                      +++   ++.+++.|++.|+ +.+...+...+++.|++|+++|++++++.+....+|..++|.+++.    .+||+.|++.
T Consensus        76 ~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~  151 (377)
T PRK11102         76 AQT---IDQLIYMRFLHGL-AAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVL  151 (377)
T ss_pred             Hcc---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHH
Confidence            999   8999999999999 8888889999999999999999999999999999999999988765    4899999998


Q ss_pred             HHHHHHHHHHHHHhccCCCCCCCCcCCccccchhhhcccccCCCCCCcccccccccchhHHHHHHhhcchhhHHHHHHHH
Q 013312          177 TIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAF  256 (445)
Q Consensus       177 ~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (445)
                      +.+.++..+...+.+||++++++++                       +   .+.++..++ .+...++|.++...+..+
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~  204 (377)
T PRK11102        152 ALAAILAAALVFFFIPETLPKERRQ-----------------------P---FHLRTTIRN-FASLFRHKRVLGYMLASG  204 (377)
T ss_pred             HHHHHHHHHHHHHhCCccCcccccC-----------------------C---CChHHHHHH-HHHHHcChHHHHHHHHHH
Confidence            8887777666666777754322111                       0   000011122 222445666665555555


Q ss_pred             HHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHH---Hhc
Q 013312          257 FSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFIC---SIS  333 (445)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~  333 (445)
                      +..........+.|.+..+.+|+++.+.+.......+..+++. +..+++.||+++|+.+..+..+..+..+.+   ...
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~-~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~  283 (377)
T PRK11102        205 FSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMT-IINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALL  283 (377)
T ss_pred             HHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555556666677888888789999999999999999999988 778999999999998887776544332222   122


Q ss_pred             C-CchhHHH-HHHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHH-HHHHHHHHH
Q 013312          334 W-SAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISS-FANIVSPLI  390 (445)
Q Consensus       334 ~-~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~-~g~~i~~~~  390 (445)
                      + +.+.... ..+.+.+.+...+.......|..| +++|++.++.+.... ++..+++.+
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~  342 (377)
T PRK11102        284 DLGFWALVVGVAAFVGCVSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALL  342 (377)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHH
Confidence            2 2333322 233344445555556666777766 889999998877653 444444443

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=100.00  E-value=4.4e-31  Score=245.32  Aligned_cols=341  Identities=22%  Similarity=0.327  Sum_probs=290.1

Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHHHHHH
Q 013312           12 HLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLS   91 (445)
Q Consensus        12 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~   91 (445)
                      .+....+...++.....+..|.+.++.        +.+..+.+++.+.+.++..+++++.|+++||+|||+.+..+..+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~   74 (352)
T cd06174           3 LLFLGFFLSGLDRGLLSPALPLLAEDL--------GLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLF   74 (352)
T ss_pred             HHHHHHHHHHHhhhhhHhhHHHHHHHc--------CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHH
Confidence            455667788888899999999997653        556678899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhhhhh----
Q 013312           92 IIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----  167 (445)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~----  167 (445)
                      .++.+...+.++   ++.+++.|++.|+ +.+...+...+++.|++|+|+|++.+++.+....+|..++|.+++.+    
T Consensus        75 ~~~~~~~~~~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  150 (352)
T cd06174          75 ALGSLLLAFASS---LWLLLVGRFLLGL-GGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESL  150 (352)
T ss_pred             HHHHHHHHHhcc---HHHHHHHHHHHHc-ccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999988   9999999999999 88888899999999999999999999999999999999999888764    


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCccccchhhhcccccCCCCCCcccccccccchhHHHHHHhhcchh
Q 013312          168 STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVT  247 (445)
Q Consensus       168 ~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (445)
                      +||+.+++.+++.++..+...+ .+                                                     |.
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~-~~-----------------------------------------------------~~  176 (352)
T cd06174         151 GWRWLFLILAILGLLLALLLLF-LL-----------------------------------------------------RL  176 (352)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHH-HH-----------------------------------------------------HH
Confidence            7999999988877666555433 22                                                     22


Q ss_pred             hHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchh-HHHHHHHHHHHH
Q 013312          248 LSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAK-LLSLGLFAACIN  326 (445)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~  326 (445)
                      ++...+..++..........+.|.+.++.+|.++.+.+.......++..++. +..+++.||+++|+ .+..+..+..++
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~  255 (352)
T cd06174         177 LLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGA-LLGGLLSDRLGRRRLLLLIGLLLAALG  255 (352)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            4445666677777778888999999999779999999999999999999998 77789999999999 999999999998


Q ss_pred             HHHHHhcCCchhHHH-HHHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCc
Q 013312          327 MFICSISWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPF  405 (445)
Q Consensus       327 ~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~  405 (445)
                      ...+...++.+.... ..+.+++.+...+...++..|..|+++|++.+|+.+...+++..++|.+.|.+.+..       
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~-------  328 (352)
T cd06174         256 LLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTG-------  328 (352)
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-------
Confidence            888888776555544 477789999999999999999999999999999999999999999999999998854       


Q ss_pred             ccchhHHHHHHHHHHHHHHHHH
Q 013312          406 NFPGFSIMCIGLASMVAFIQSL  427 (445)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~~  427 (445)
                      ++.. .+.+.+++.+++.+..+
T Consensus       329 ~~~~-~~~~~~~~~~i~~i~~~  349 (352)
T cd06174         329 GYGG-VFLILAALALLAALLLL  349 (352)
T ss_pred             Ccch-HHHHHHHHHHHHHHHhe
Confidence            2222 35566666666555443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=100.00  E-value=1.9e-30  Score=243.94  Aligned_cols=345  Identities=15%  Similarity=0.119  Sum_probs=265.7

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHHH
Q 013312            9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL   88 (445)
Q Consensus         9 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~   88 (445)
                      .+..+....++..+..++..|.+|.+.+        +++.+..+.|++.+.+.+++.+++++.|++.||+|||+++..+.
T Consensus         4 ~~~~~~~~f~~~G~~~~~~~~l~~~~~~--------~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~   75 (410)
T TIGR00885         4 PFALITSLFALWGFANDITNPMVPQFQQ--------AFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGL   75 (410)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHH--------HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHH
Confidence            3456667777888888999999999964        44677789999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhh---cCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhhh
Q 013312           89 TLSIIPLAILAYR---RSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAAR  165 (445)
Q Consensus        89 ~~~~~~~~~~~~~---~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~  165 (445)
                      ++.+++.+++..+   ++   ++.+++.|++.|+ +.+...+..+.++.+..|+++|++.+++.+...++|..+||.++.
T Consensus        76 ~l~~~g~~l~~~~~~~~~---~~~~l~~~~l~G~-g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~  151 (410)
T TIGR00885        76 FLYALGAFLFWPAAEIMN---YTLFLVGLFILTA-GLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQ  151 (410)
T ss_pred             HHHHHHHHHHHHHHhhcc---HHHHHHHHHHHHh-hHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999998886554   46   8999999999999 889999999999999999999999999999999999999988765


Q ss_pred             hh------------------------------chhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCccccchhhhccc
Q 013312          166 FL------------------------------STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGV  215 (445)
Q Consensus       166 ~~------------------------------~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~  215 (445)
                      .+                              +||++|++.+++.++..+... ..++++.+++++              
T Consensus       152 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~-~~~~p~~~~~~~--------------  216 (410)
T TIGR00885       152 QLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIM-LTKMPALNHSDA--------------  216 (410)
T ss_pred             HHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCCcccc--------------
Confidence            43                              499999988887665543332 222211111000              


Q ss_pred             ccCCCCCCcccccccccchhHHHHHHhhcchhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhc-CCchhhHHHHHHHHHHH
Q 013312          216 NQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQF-HFNKNQFADLMLIAGLA  294 (445)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~  294 (445)
                               + + .    +.++..+...++|.++...+..+++........++++.|.++.. +.+....+...+.....
T Consensus       217 ---------~-~-~----~~~~~~~~~~~~~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~  281 (410)
T TIGR00885       217 ---------K-Q-I----SFSASLSRLARIRHYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVI  281 (410)
T ss_pred             ---------c-c-c----cchhhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHH
Confidence                     0 0 0    00111122456677777777777777777778889999997632 44444445555555666


Q ss_pred             HHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHhhhhhhhhhHHHHHhcccCCccchhHHH
Q 013312          295 GTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQG  374 (445)
Q Consensus       295 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g  374 (445)
                      ..+++ ++++++.||+++|+.+.+......+..++....++....+...+.+++.+..+|...+...+..+++.+....+
T Consensus       282 ~~vGR-~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~  360 (410)
T TIGR00885       282 FFISR-FIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGHVGLYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAG  360 (410)
T ss_pred             HHHHH-HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHH
Confidence            77887 88899999999999988888888888877777766555555677889999999999999999998766544555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh
Q 013312          375 CISGISSFANIVSPLIFSPLTALF  398 (445)
Q Consensus       375 ~~~~~~~~g~~i~~~~~g~l~~~~  398 (445)
                      +....  +|+.+.|.+.|.+.|+.
T Consensus       361 l~~~~--~Gga~~p~l~G~~~d~~  382 (410)
T TIGR00885       361 LVMAI--IGGGIVPPLQGFIIDMK  382 (410)
T ss_pred             HHHHH--hccchHHHHHHHHHHHh
Confidence            44443  99999999999999964

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00883 2A0106 metabolite-proton symporter

Probab=100.00  E-value=5.2e-31  Score=248.85  Aligned_cols=350  Identities=13%  Similarity=0.052  Sum_probs=249.2

Q ss_pred             HHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHHHHHHHHHHHH
Q 013312           18 FLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAI   97 (445)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~   97 (445)
                      +.+.++.+.+.+..+.+.++...+ .++...+........+...++..+++++.|+++||+|||+++..+.++..++.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~   81 (394)
T TIGR00883         3 AVEWFDFYLYGFAAVLVFHTFFPP-SGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLL   81 (394)
T ss_pred             chhHHHHHHHHHHHHHHHHHhcCC-CCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            456677777777777776664321 1222222222223344555666789999999999999999999999999999999


Q ss_pred             HHhhcCcch-----hHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhhh-------
Q 013312           98 LAYRRSISF-----FYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAAR-------  165 (445)
Q Consensus        98 ~~~~~~~~~-----~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~-------  165 (445)
                      ++++++...     .+.+++.|+++|+ +.+...+...+++.|++|+++|++..+..+....+|..+++.++.       
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~r~l~G~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~  160 (394)
T TIGR00883        82 IGLLPSYATIGIWAPILLLLARLIQGF-SLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLG  160 (394)
T ss_pred             HhhCCChhhhHHHHHHHHHHHHHHHHh-hccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999998321     1258899999999 888888999999999999999999999999999999999887653       


Q ss_pred             -----hhchhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCccccchhhhcccccCCCCCCcccccccccchhHHHHH
Q 013312          166 -----FLSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLIC  240 (445)
Q Consensus       166 -----~~~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (445)
                           ..+||+.|++.+++.++.. ......||+++.++++++                        +++.+.+.++.  
T Consensus       161 ~~~~~~~~w~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~--  213 (394)
T TIGR00883       161 DDALLEWGWRIPFLVSAVLVLIGL-YLRRNLEETPVFEKAQEK------------------------HKKKRGPIRET--  213 (394)
T ss_pred             HHHhhccchHHHHHHHHHHHHHHH-HHHHhcCCChhHHHHHhc------------------------cccccCCHHHH--
Confidence                 2489999988776655443 333455665432211100                        00011122332  


Q ss_pred             Hhhcc-hhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHH
Q 013312          241 LLRSS-VTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLG  319 (445)
Q Consensus       241 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  319 (445)
                       ++++ +.++......++..........+.|.|.++.+|.++.+.+.......+...++. ++.+++.||+++|+.+...
T Consensus       214 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~g~l~dr~g~~~~~~~~  291 (394)
T TIGR00883       214 -LTKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITI-PLSGALSDRIGRRPVLIIF  291 (394)
T ss_pred             -HHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHH-HHHHHHHHHhchHHHHHHH
Confidence             2222 235555556666666677778899999988889999999999999999998888 7789999999999977654


Q ss_pred             HHHHHHHH-H-HHHhc--CCchhHHH-HHHHHhhhhhhhhhHHHHHhcccCCccchhHHHHH-HHHHHHHHHHHHHHHHH
Q 013312          320 LFAACINM-F-ICSIS--WSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCI-SGISSFANIVSPLIFSP  393 (445)
Q Consensus       320 ~~~~~~~~-~-~~~~~--~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~-~~~~~~g~~i~~~~~g~  393 (445)
                      ..+..+.. . .....  ++.+.... ..+.+++.+...+...+.+.|.+|+++|+++.++. +....+|..++|.+.|+
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~  371 (394)
T TIGR00883       292 TVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAA  371 (394)
T ss_pred             HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHH
Confidence            44333222 2 22222  23343333 35567777788889999999999999999999985 45556888899999999


Q ss_pred             HHHhh
Q 013312          394 LTALF  398 (445)
Q Consensus       394 l~~~~  398 (445)
                      +.|+.
T Consensus       372 l~~~~  376 (394)
T TIGR00883       372 LVAMT  376 (394)
T ss_pred             HHHHc
Confidence            99986

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK11010 ampG muropeptide transporter; Validated

Probab=100.00  E-value=5e-30  Score=246.69  Aligned_cols=376  Identities=13%  Similarity=0.107  Sum_probs=266.9

Q ss_pred             hhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhcccccccc-----Cchh
Q 013312            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQY-----GRKA   82 (445)
Q Consensus         8 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~-----Grr~   82 (445)
                      |+...++...+.......+..+.+|.+.++.        +.+..++|.+ +.....+ ++.+++|+++||+     ||||
T Consensus        12 ~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~~--------g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr   81 (491)
T PRK11010         12 PNSAILLILGFASGLPLALTSGTLQAWMTVE--------NIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRR   81 (491)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCch
Confidence            3455666667788888899999999998653        4555667775 3334443 5889999999999     9998


Q ss_pred             H-hHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhh
Q 013312           83 M-LTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGT  161 (445)
Q Consensus        83 ~-l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~  161 (445)
                      . +..+.+..+++...+++.+..+.++.+.+.+++.|+ +.+...+...+++.|++|+|||+++.++...+..+|.++++
T Consensus        82 ~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~-~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~  160 (491)
T PRK11010         82 GWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAF-CSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSG  160 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHH
Confidence            6 557777777887777776433338889999999999 77888899999999999999999999999999999999887


Q ss_pred             hhhhh-----hchhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCccccchhhhcccccCCCCCCcccccccccchhH
Q 013312          162 LAARF-----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIR  236 (445)
Q Consensus       162 ~l~~~-----~~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (445)
                      .++..     .|||..|++.+++.++..+.. +..||++++++++                       ++..++..++++
T Consensus       161 ~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~-~~~~e~~~~~~~~-----------------------~~~~~~~~~~l~  216 (491)
T PRK11010        161 GLALWLADRYLGWQGMYWLMAALLIPCIIAT-LLAPEPTDTIPVP-----------------------KTLEQAVVAPLR  216 (491)
T ss_pred             HHHHHHHhcccCHHHHHHHHHHHHHHHHHHH-HhcCCCccccccc-----------------------cchhhhHHHHHH
Confidence            65543     589999999988776664444 4467754321110                       000000011222


Q ss_pred             HHHHHhhcchhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHH-HHHHHHHHHHHHHHHHhhhhhcchhH
Q 013312          237 DLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLML-IAGLAGTISQLLFMPLLAPILGEAKL  315 (445)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~  315 (445)
                      +    +++++..+......++..........+.+.|+.+..|+|+.+.+.... ...++.+++. ++.|++.||+++|+.
T Consensus       217 ~----~~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~-ll~G~L~dr~g~~~~  291 (491)
T PRK11010        217 D----FFGRNNAWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGA-LYGGILMQRLSLFRA  291 (491)
T ss_pred             H----HHcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHH
Confidence            2    344555555555556666666666778888887778999999999875 4456777777 888999999999887


Q ss_pred             HHHHHHHHHHHHHH---HHhcC-CchhHHH-HHHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHH
Q 013312          316 LSLGLFAACINMFI---CSISW-SAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLI  390 (445)
Q Consensus       316 ~~~~~~~~~~~~~~---~~~~~-~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~  390 (445)
                      +..+.++..+..+.   +.... +.+.+.. ..+..+..+...+...++..+..+++.+++..|+.+....+|..+++.+
T Consensus       292 l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~  371 (491)
T PRK11010        292 LMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPV  371 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            76665554443322   22322 2222222 2343445555667778888899999999999999999999999999999


Q ss_pred             HHHHHHhhhcCCCCcccchhHHHHHHHHHHHHHHHHHhccC
Q 013312          391 FSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMSH  431 (445)
Q Consensus       391 ~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (445)
                      .|++.|..       ++.. .|.+.+++.+.+.+.....++
T Consensus       372 ~G~l~~~~-------G~~~-~f~~~~~~~l~~l~~~~~~~~  404 (491)
T PRK11010        372 AGWFVEAH-------GWPT-FYLFSVAAAVPGLLLLLVCRQ  404 (491)
T ss_pred             HHHHHHHh-------ChHH-HHHHHHHHHHHHHHHHHHHHh
Confidence            99999976       3333 466666777777666665544

>TIGR00889 2A0110 nucleoside transporter

Probab=100.00  E-value=4.6e-30  Score=242.41  Aligned_cols=373  Identities=13%  Similarity=0.107  Sum_probs=263.8

Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCc-hhHhHHHHHHH
Q 013312           13 LFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGR-KAMLTLPLTLS   91 (445)
Q Consensus        13 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Gr-r~~l~~~~~~~   91 (445)
                      +.+..++.+.++++..|.++.+..+       +.+.+..+.|++.+++.++..++++++|+++||+|| |+++.++.++.
T Consensus         7 ~~~~~~~~~~~~~~~~~~l~~~l~~-------~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~   79 (418)
T TIGR00889         7 LKFMSFLQWFIWGSWLVTLGSYMSK-------TLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAG   79 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-------hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence            5667788889999999999999864       346777899999999999999999999999999965 77888888888


Q ss_pred             HHHHHHHHhhcCcchhHHHHHHHHHhhhccchhHHHHHHHHHh--------cCCCccchhhHHHHHHHHHhhhhhhhhhh
Q 013312           92 IIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVA--------DNISERQRASAFGILLGVLSASFVCGTLA  163 (445)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~--------~~~~~~~r~~~~~~~~~~~~~g~~~g~~l  163 (445)
                      +++..+..+.++   ++.+++.|++.|+ +.+...+...++..        |..+...|.|.+|      .+|.++||.+
T Consensus        80 ~~~~~~~~~~~~---~~~~~~~~~l~~~-~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l  149 (418)
T TIGR00889        80 ALLLFFAAQVTT---PAGMFPVLLANSL-AYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWA  149 (418)
T ss_pred             HHHHHHHHHhcC---HHHHHHHHHHHHH-HHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHH
Confidence            888888888888   8999999999998 66666666555432        3333345555555      3577777777


Q ss_pred             hhhhch---hhHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCccccchhhhcccccCCCCCCcccccccccchhHHHHH
Q 013312          164 ARFLST---TSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLIC  240 (445)
Q Consensus       164 ~~~~~w---~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (445)
                      ++.++.   +.+|++.+++.++..+. .+.+||++++++++ +                      .+. ++  ..+...+
T Consensus       150 ~g~l~~~~~~~~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~-~----------------------~~~-~~--~~~~~~~  202 (418)
T TIGR00889       150 VSLLDIELSNIQLYITAGSSALLGVF-ALTLPDIPVAKSTA-K----------------------MSI-KV--MLGLDAF  202 (418)
T ss_pred             HHHhcccchhHHHHHHHHHHHHHHHH-HhcCCCCCCCcccc-c----------------------cCH-HH--HhhhhHH
Confidence            776532   23466666666655543 45678764322111 0                      000 00  0000112


Q ss_pred             HhhcchhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCch--------hhHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 013312          241 LLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNK--------NQFADLMLIAGLAGTISQLLFMPLLAPILGE  312 (445)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--------~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~  312 (445)
                      ..+|+|.++...+..++..........+.|.|.++ .|.++        ...+...+...+..+++. +..+++.||+|+
T Consensus       203 ~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~-~~~g~l~dr~g~  280 (418)
T TIGR00889       203 ILFKNKRMAIFFFFSMLLGAPLQITNIFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFI-LTIPFFLKRFGI  280 (418)
T ss_pred             HHhcCCCeeeHHHHHHHHHhHHHHHHHhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHhCc
Confidence            24567777777777777666666667788888877 45443        566888899999998888 777999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHhcCC-c---hhHHH-HHHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHH-HHHHHHHHH
Q 013312          313 AKLLSLGLFAACINMFICSISWS-A---WVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCIS-GISSFANIV  386 (445)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~-~~~~~g~~i  386 (445)
                      |+++..+.++..++...+....+ .   +..+. ..+.+++.+...+....++.|.+|+++||+++|+.+ ....+|..+
T Consensus       281 r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~i  360 (418)
T TIGR00889       281 KKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLL  360 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHH
Confidence            99999999988888766665332 2   22222 366677888888888899999999999999999997 567899999


Q ss_pred             HHHHHHHHHHhhhcCCCCcccchhHHHHHHHHHHHHHHHHHhccCCC
Q 013312          387 SPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMSHTP  433 (445)
Q Consensus       387 ~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (445)
                      ||.+.|++.|+.++... +++.. .|.+.+++.+++.+..+...+++
T Consensus       361 Gp~l~G~l~~~~g~~~~-~~~~~-~f~~~~~~~~i~~~l~~~~~~~~  405 (418)
T TIGR00889       361 GYILSGVMVEKMFAYGT-FDWQT-MWLFFAGYIAILAVLFMIFFKYS  405 (418)
T ss_pred             HHHHHHHHHHHhccccC-CchHH-HHHHHHHHHHHHHHHHHHHhCCc
Confidence            99999999998632110 12222 34555555455444444444443

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=100.00  E-value=5e-30  Score=237.08  Aligned_cols=373  Identities=17%  Similarity=0.173  Sum_probs=276.0

Q ss_pred             HHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHhhhccchhHHHHHH
Q 013312           51 YLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLAL  130 (445)
Q Consensus        51 ~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~  130 (445)
                      ...+.+.+++.+|.++|+...|.++||+|||..+.++.++..++.+...++...+.+..++++|++.|+ ..|.......
T Consensus        60 ~lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl-~~gl~~~~~p  138 (485)
T KOG0569|consen   60 LLWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGL-ACGLSTGLVP  138 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HhHHHHHHHH
Confidence            457889999999999999999999999999999999999888888887776554449999999999999 8899999999


Q ss_pred             HHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhh------hhhchhhHHHHHHHHHHHHHHHHHHhccCCCCC----CCC
Q 013312          131 AYVADNISERQRASAFGILLGVLSASFVCGTLAA------RFLSTTSAFQAATIVSMLAAAYMRVFLKDDVPN----DDD  200 (445)
Q Consensus       131 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~------~~~~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~----~~~  200 (445)
                      .++.|..|++.||......+.+..+|.++|..++      ..-.|++.+....+++++..+ ...++||+|+.    +++
T Consensus       139 myl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~-~l~~~PESPk~Ll~~k~~  217 (485)
T KOG0569|consen  139 MYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLA-LLPFLPESPKYLLIKKGD  217 (485)
T ss_pred             HHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHH-HHhcCCCCcchHHHHcCC
Confidence            9999999999999999999999999999885554      334799999998888766644 45789999984    344


Q ss_pred             cCCccccchhhhcccccCCCCCC------cccccccccchhHHHHHHhhcchhhHHHHHHHHHHHhhhh-hhHHHHHHHH
Q 013312          201 DDLTRPIITEETEGVNQNESNSP------VKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEG-GMQASFLYFL  273 (445)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  273 (445)
                      +++++++++..+...+.+++.+.      .++..+++..++++.++.-..++.+...+...+...+... ....+....+
T Consensus       218 ~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~  297 (485)
T KOG0569|consen  218 EEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIF  297 (485)
T ss_pred             HHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHH
Confidence            44555555554433221111111      1111112333556644432223333334444444444333 3444555555


Q ss_pred             HhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHhcC-----C-chhHHH----HH
Q 013312          274 KAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISW-----S-AWVPYA----TT  343 (445)
Q Consensus       274 ~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~----~~  343 (445)
                      ++ .|+++.++-+.....+....+.. +++.++.||.|||++++.+..++.+..+++....     . .|..+.    .+
T Consensus       298 ~~-aG~~~~~a~~an~~~g~v~~~~t-~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~  375 (485)
T KOG0569|consen  298 KT-AGFTPEEAQYANLGIGIVNLLST-LVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIF  375 (485)
T ss_pred             HH-cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            55 79999999999999999999998 8889999999999999999998888877665532     1 333322    23


Q ss_pred             HHHhhhh-hhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccchhHHHHHHHHHHHH
Q 013312          344 AFSVLVV-FATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVA  422 (445)
Q Consensus       344 ~~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (445)
                      ++.+..+ +..|..+-+.+|.+|++.|..++++....+.+.+++-...+..+.+.++       .  ..|+...+.+.+.
T Consensus       376 ~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g-------~--~~filF~i~~~~~  446 (485)
T KOG0569|consen  376 LFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIG-------P--YVFILFVIPLAIF  446 (485)
T ss_pred             HHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------c--hhhHHHHHHHHHH
Confidence            3333333 3578889999999999999999999999999999999999999988762       2  3567777777777


Q ss_pred             HHHHHhccCCCCCC
Q 013312          423 FIQSLMMSHTPASS  436 (445)
Q Consensus       423 ~~~~~~~~~~~~~~  436 (445)
                      .+..++..||++.+
T Consensus       447 ~i~~~~~lPETkgr  460 (485)
T KOG0569|consen  447 LIYLYRYLPETKGR  460 (485)
T ss_pred             HHHHHHhCcccCCC
Confidence            78888777777644

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=100.00  E-value=1.2e-30  Score=243.79  Aligned_cols=343  Identities=18%  Similarity=0.177  Sum_probs=249.0

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHHH
Q 013312            9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL   88 (445)
Q Consensus         9 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~   88 (445)
                      .++..++..++...+.....|..|.+.+       ++++.+..+.|++.+++.+++.+++++.|+++||+|||+.+..+.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~   74 (366)
T TIGR00886         2 NLFFSWFGFFLSFSVWFAFSPLAVQMIK-------DDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSL   74 (366)
T ss_pred             chHHHHHHHHHHHHHHHHhHHhhhHHHH-------HHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHH
Confidence            3456777788888888889999997543       345777788999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhc-CcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhhhh-
Q 013312           89 TLSIIPLAILAYRR-SISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF-  166 (445)
Q Consensus        89 ~~~~~~~~~~~~~~-~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~-  166 (445)
                      ++.+++.+++++++ +   ++.+++.|+++|+ +.+.. +...++++|++|+++|++++++.....++|..+++.++.. 
T Consensus        75 ~~~~i~~~~~~~~~~~---~~~~~~~~~~~g~-~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l  149 (366)
T TIGR00886        75 LLLAIPCLWAGLAVQS---YSVLLLLRLFIGI-AGGSF-ASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPI  149 (366)
T ss_pred             HHHHHHHHHHHHHhhh---HHHHHHHHHHHHH-hchhh-HhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            99999999999999 8   9999999999999 65544 5678999999999999999999987776666665544422 


Q ss_pred             -------------hchhhHH-HHHHHHHHHHHHHHHHhccCCCCCCCCcCCccccchhhhcccccCCCCCCccccccccc
Q 013312          167 -------------LSTTSAF-QAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKI  232 (445)
Q Consensus       167 -------------~~w~~~f-~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (445)
                                   .+||+.| ...+++..+..++.....+|++++++++++.+           .+++..   .   .++
T Consensus       150 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~---~---~~~  212 (366)
T TIGR00886       150 IGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGADTPPGKPATGKLS-----------FKGARW---S---VGT  212 (366)
T ss_pred             HHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhcccCCcccccchhcc-----------cccccc---c---ccc
Confidence                         2799999 44455544444555555666554322110000           000000   0   000


Q ss_pred             chhHHHHHHhhcchhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 013312          233 PSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGE  312 (445)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~  312 (445)
                      +..++..+ ..++|.++...+..++..........+.|.|+++.+|+++.+.+.+.....+..+++. ++.+++.||+++
T Consensus       213 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~g~l~~r~g~  290 (366)
T TIGR00886       213 GALGDQLK-VFRDRHTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLAR-PLGGAISDRLGG  290 (366)
T ss_pred             hhHHHHHH-HHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHh-hccchHHHhhcc
Confidence            11122222 3455666666666666666667778899999999899999999998888888888888 788999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHhcC----CchhHHH-HHHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHH
Q 013312          313 AKLLSLGLFAACINMFICSISW----SAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFA  383 (445)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g  383 (445)
                      |+....+......+...+.+..    +.+.... ..+..++.+...+...+...+..| +++|++.|+.+..+++|
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       291 ARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG  365 (366)
T ss_pred             chhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence            8877777666666555544322    2222222 244455666666777778888776 79999999999988865

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=100.00  E-value=3.5e-30  Score=273.79  Aligned_cols=359  Identities=11%  Similarity=0.070  Sum_probs=264.6

Q ss_pred             HhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHH
Q 013312            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (445)
Q Consensus         7 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~   86 (445)
                      ++.+..++...++..++.++....++.+....+  ..+....+....++..+++.+++.+++++.|+++||+|||+++..
T Consensus        10 ~~~f~~l~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~   87 (1140)
T PRK06814         10 SRRFAPLFWTQFFGAFNDNFLKNALVILILYGL--SGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKI   87 (1140)
T ss_pred             ccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHh--ccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHH
Confidence            345666777788887776655444333322111  011111233567889999999999999999999999999998643


Q ss_pred             ---HHHHHHHHHHHHHhhcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhh
Q 013312           87 ---PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLA  163 (445)
Q Consensus        87 ---~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l  163 (445)
                         ..+...+..+.....++   ++.++++|+++|+ +.+...|+..+++.|++++++|++++++.+++.++|.++||.+
T Consensus        88 ~~~~~~~~~~~~~~~~~~~s---~~~l~~~~~l~gi-~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l  163 (1140)
T PRK06814         88 LKFAEIGIAALAIYGFHLNS---VPLLFAALFLMGI-HSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTII  163 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHH-HHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHH
Confidence               22233333333334477   9999999999999 8899999999999999999999999999999999999999999


Q ss_pred             hhhh----chhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCccccchhhhcccccCCCCCCcccccccccchhHHHH
Q 013312          164 ARFL----STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLI  239 (445)
Q Consensus       164 ~~~~----~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (445)
                      ++.+    +|++.|....+..+ ..++..+.+|++++..+..+                        ..........+.+
T Consensus       164 ~g~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~  218 (1140)
T PRK06814        164 GGLATISGNFVILVALLMGIAV-LGWLASLFIPKTGNAAPDLK------------------------IDRNIIRSTITLL  218 (1140)
T ss_pred             HHHHHhccccHHHHHHHHHHHH-HHHHHHhhCCCCCCCCCCCe------------------------eccchHHHHHHHH
Confidence            9874    89998855444443 33444466666543221110                        0000011223445


Q ss_pred             HHhhcchhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHH
Q 013312          240 CLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLG  319 (445)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  319 (445)
                      +..+++|.++...+..++.++.......++|.|+++.+|.++.+.|++.+..+++.+++. +..+++.|+..+++.+..+
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~-~~~g~l~~~~~~~~~~~~~  297 (1140)
T PRK06814        219 KYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGS-FLASKLSEGRITLLYVPIG  297 (1140)
T ss_pred             HHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHH-HHHHHHhCCceeeeeehHH
Confidence            567788888888887777777777888899999999999999999999999999999998 7778999887766655555


Q ss_pred             HHHHHHHHHHHHhc--------------------CCchhHHH-HHHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHH
Q 013312          320 LFAACINMFICSIS--------------------WSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISG  378 (445)
Q Consensus       320 ~~~~~~~~~~~~~~--------------------~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~  378 (445)
                      .++..+..+.+.+.                    .+.|...+ .+++|++.+...+...+++++.+|++.+|+++|+.++
T Consensus       298 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~  377 (1140)
T PRK06814        298 ALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNV  377 (1140)
T ss_pred             HHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHH
Confidence            55544444433332                    34444444 4667888888889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHh
Q 013312          379 ISSFANIVSPLIFSPLTAL  397 (445)
Q Consensus       379 ~~~~g~~i~~~~~g~l~~~  397 (445)
                      ...++..+++.+.|.+.+.
T Consensus       378 ~~~~~~~ig~~~~g~l~~~  396 (1140)
T PRK06814        378 LNAAFMVAGTIILALLQAL  396 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            9999999999999998764

>TIGR00896 CynX cyanate transporter

Probab=100.00  E-value=1.1e-30  Score=242.88  Aligned_cols=330  Identities=13%  Similarity=0.060  Sum_probs=250.7

Q ss_pred             HHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHHHHHHHHHHHHHHhhc
Q 013312           23 ATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRR  102 (445)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~  102 (445)
                      ......|.+|.+.+|        ++.+..+.|++.+++.++..+++++.|+++||+|||+++..+.+...++.+.+ .++
T Consensus        15 ~~~~~~~~lp~l~~~--------~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~   85 (355)
T TIGR00896        15 ALTSVGPLLPQIRSA--------LGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAP   85 (355)
T ss_pred             ccccCcccHHHHHHH--------hCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-Hhc
Confidence            345667888988754        46777889999999999999999999999999999999999998888888777 677


Q ss_pred             CcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhhhhh------chhhHHHHH
Q 013312          103 SISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL------STTSAFQAA  176 (445)
Q Consensus       103 ~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~------~w~~~f~~~  176 (445)
                      +   ++.+++.|++.|+ +.+...+....++.|++| ++|+++++..+...++|..+++.+++.+      +||+.|...
T Consensus        86 ~---~~~l~~~~~~~g~-g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~  160 (355)
T TIGR00896        86 G---TALLFAGTALIGV-GIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWW  160 (355)
T ss_pred             c---HHHHHHHHHHHHH-HHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence            7   8889999999999 778777788888899886 6899999999999999998888776542      389888776


Q ss_pred             HHHHHHHHHHHHHhccCCCCCCCCcCCccccchhhhcccccCCCCCCcccccccccchhHHHHHHhhcchhhHHHHHHHH
Q 013312          177 TIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAF  256 (445)
Q Consensus       177 ~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (445)
                      +++.++..   ...+|+.++++++++                      . .   .....++    ..++|.++...+..+
T Consensus       161 ~~~~~~~~---~~~~~~~~~~~~~~~----------------------~-~---~~~~~~~----~~~~~~~~~~~~~~~  207 (355)
T TIGR00896       161 ALPALLAL---LAWIPQVRRRVAANQ----------------------T-T---TRLTPVR----IWRSPLAWQVTVFFG  207 (355)
T ss_pred             HHHHHHHH---HHHhhhhccccCCCC----------------------C-C---CCCCCch----hhcCHhHHHHHHHHH
Confidence            65543332   233454332111100                      0 0   0001122    335566665555556


Q ss_pred             HHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhh-cchhHHHHHHHHHHHHHHHHHhcCC
Q 013312          257 FSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPIL-GEAKLLSLGLFAACINMFICSISWS  335 (445)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  335 (445)
                      +..........++|.|+++ .|+++.+.+...+...++.++++ +..+++.||+ ++|+.+..+..+..++.+.+.+.++
T Consensus       208 ~~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~-~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (355)
T TIGR00896       208 LQSGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASA-LLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPM  285 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHH-HhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhh
Confidence            6666677778899999987 69999999999999999999998 7889999999 4566667777777777666666554


Q ss_pred             chhHHHHHHHHhhhhhhhhhHHHHHhcccC-CccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 013312          336 AWVPYATTAFSVLVVFATPSFRSIVSKQVG-PNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSK  401 (445)
Q Consensus       336 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~  401 (445)
                      .+......+.|++.+...+...+...+..+ ++++++..++.+...+++..++|.+.|++.|+.+++
T Consensus       286 ~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~~  352 (355)
T TIGR00896       286 HGLWAWALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGNW  352 (355)
T ss_pred             hHHHHHHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            333334566788888888887777665544 567799999999999999999999999999988544

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=100.00  E-value=4.6e-29  Score=235.56  Aligned_cols=369  Identities=13%  Similarity=0.095  Sum_probs=257.4

Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhcccccccc-----Cchh-HhHHH
Q 013312           14 FVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQY-----GRKA-MLTLP   87 (445)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~-----Grr~-~l~~~   87 (445)
                      +...+...+..+...+.+|.++++.        +.+..++|++..+...  .+..+++|+++||+     |||| .+..+
T Consensus         5 ~~l~~~~~~~~~~~~~~~~~~l~~~--------g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~   74 (402)
T PRK11902          5 LLLGFASGLPLALTSGTLQAWMTVE--------GLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLT   74 (402)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHc--------CCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHH
Confidence            4445667778888899999999753        7777889998777665  68999999999999     8875 68888


Q ss_pred             HHHHHHHHHHHHhhcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhhhh-
Q 013312           88 LTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF-  166 (445)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~-  166 (445)
                      .++.+++....++.++...++.+++..++.+. ..+...+...+++.|+.|+|||+++.++...+.++|.++++.++.. 
T Consensus        75 ~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l  153 (402)
T PRK11902         75 QVGLAASIAAMAFCPPHAALWPLAGLAVLVAF-LSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWL  153 (402)
T ss_pred             HHHHHHHHHHHHhcCccchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            88888888888887433337778888888887 7788889999999999999999999999999999999998875544 


Q ss_pred             ----hchhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCccccchhhhcccccCCCCCCcccccccccchhHHHHHHh
Q 013312          167 ----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLL  242 (445)
Q Consensus       167 ----~~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (445)
                          .+||..|++.+++.++..+. .+..||+++++++++                        +   .+++.++.++.+
T Consensus       154 ~~~~~gw~~~f~i~a~~~l~~~l~-~~~~~e~~~~~~~~~------------------------~---~~~~~~~~~~~l  205 (402)
T PRK11902        154 ADRVLGWGNTYLLMAGLMLAGALT-TLWAPEPEVPARPPR------------------------S---LGEAVVGPLRDF  205 (402)
T ss_pred             HhcccCHHHHHHHHHHHHHHHHHH-HHhcCCCcccccccc------------------------h---hHHHHHHHHHHH
Confidence                48999999988876655443 456676543221110                        0   000122334446


Q ss_pred             hcchhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHH-HHHHHHHHHHHHhhhhhcchhHHHHHHH
Q 013312          243 RSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGL-AGTISQLLFMPLLAPILGEAKLLSLGLF  321 (445)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~  321 (445)
                      +++|.++..++..++..........+.+.++.+..|+++.+.+++....+. +.+++. +..+++.||+++|+.+..+..
T Consensus       206 ~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~-~~~g~l~~r~g~~~~l~~~~~  284 (402)
T PRK11902        206 FSRRGAWALLLLIVLYKLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGA-LAGGTLMVRLGLYRSLMLFGV  284 (402)
T ss_pred             HhCcCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHH
Confidence            677877776666666555444444455566767689999999998876655 466666 888999999999988776666


Q ss_pred             HHHHHHHHH---HhcC-CchhHHHH-HH----HHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHH
Q 013312          322 AACINMFIC---SISW-SAWVPYAT-TA----FSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFS  392 (445)
Q Consensus       322 ~~~~~~~~~---~~~~-~~~~~~~~-~~----~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g  392 (445)
                      +..+..+.+   ...+ +.+..... .+    .+++.+...+....++++..|.    +..+..+....++..+++.+.|
T Consensus       285 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~G  360 (402)
T PRK11902        285 LQAVSNLGYWVLAVTPKHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSA----TQYALLSALASVGRVYVGPTSG  360 (402)
T ss_pred             HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcH----HHHHHHHHHHHHHHHHHHHHHH
Confidence            655443332   3333 33433332 22    2344444555556666666654    4456666667788877777999


Q ss_pred             HHHHhhhcCCCCcccchhHHHHHHHHHHHHHHHHHhccCCCC
Q 013312          393 PLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMSHTPA  434 (445)
Q Consensus       393 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (445)
                      .++|+.       ++.. .+...+++.+++....++.+++-+
T Consensus       361 ~l~~~~-------G~~~-~f~~~~~~~~~~~~~~~~~~~~~~  394 (402)
T PRK11902        361 YLVEAY-------GWPG-FYLMTVVIALPGLALLWLMRGTIG  394 (402)
T ss_pred             HHHHHh-------ChHH-HHHHHHHHHHHHHHHHHHHhhhcc
Confidence            999987       4443 366666777777776666655533

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=100.00  E-value=1.3e-29  Score=237.54  Aligned_cols=335  Identities=12%  Similarity=-0.007  Sum_probs=251.9

Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCch----hHhHHHHHHH
Q 013312           16 TVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRK----AMLTLPLTLS   91 (445)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr----~~l~~~~~~~   91 (445)
                      ..+....+.+++.|.+|.+.+|        .+.+..+.|++.+++.++..++++++|+++||+|||    +.+.+.....
T Consensus        12 ~~~~~~~~~g~~~p~l~~~l~~--------~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~   83 (382)
T PRK11128         12 SYFGYFFAYGVFLPFWSVWLKG--------QGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF   83 (382)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHh--------cCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence            3556667889999999999864        366778999999999999999999999999999994    3333222221


Q ss_pred             HHHHHHHHhhcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhhhh----h
Q 013312           92 IIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF----L  167 (445)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~----~  167 (445)
                        ........++   +|.+++.|++.|+ +.+...|...++..++  +++|+++++......++|..+||.+++.    +
T Consensus        84 --~~~~~~~~~~---~~~l~i~~~l~g~-~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~  155 (382)
T PRK11128         84 --AVAFWFGAHS---FWLLFVAIGLFNL-FFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWF  155 (382)
T ss_pred             --HHHHHHhccc---HHHHHHHHHHHHH-HHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHc
Confidence              2223334567   8999999999999 7777788888888876  4567888888888889999999998876    4


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCccccchhhhcccccCCCCCCcccccccccchhHHHHHHhhcchh
Q 013312          168 STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVT  247 (445)
Q Consensus       168 ~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (445)
                      +||..|++.++..++..+ ..+..||++++.+++                        ++.++..+++    +..+|+|.
T Consensus       156 g~~~~f~~~~~~~~~~~~-~~~~~~~~~~~~~~~------------------------~~~~~~~~~~----~~i~~~~~  206 (382)
T PRK11128        156 GEQAILWILTAGVASMLL-GQLLRPTIMPQGESR------------------------QQESAGWPAW----KALLKEPT  206 (382)
T ss_pred             ChhHHHHHHHHHHHHHHH-HHHccCCCCCccccc------------------------cccccccchH----HHHHcChh
Confidence            999999887765444333 333444432211100                        0000001122    33567788


Q ss_pred             hHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHH
Q 013312          248 LSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINM  327 (445)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  327 (445)
                      ++...+..++..........+.|.|.++ .|.++.+.|.+.+...+..++.. +..+++.||+++|+.+..+....+++.
T Consensus       207 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~-~~~g~l~~r~~~~~~l~~~~~~~~~~~  284 (382)
T PRK11128        207 VWRFLLCVSLLQGSHAAYYGFSAIYWQA-AGYSASTIGYLWSLGVVAEVLIF-AFSNRLFRRWSARDLLLLSAICGVVRW  284 (382)
T ss_pred             HHHHHHHHHHHHHHhHhHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence            8877777777777777788888999977 79999999999998888887777 778999999999999999998888888


Q ss_pred             HHHHhcCCchhHHH-HHHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHH-HHHHHHHHHHHHHHHHHHHhh
Q 013312          328 FICSISWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCIS-GISSFANIVSPLIFSPLTALF  398 (445)
Q Consensus       328 ~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~-~~~~~g~~i~~~~~g~l~~~~  398 (445)
                      +.+...++.+..+. .++.+++.+...+....+..+. +++++++.++..+ ....+|..+||.+.|.++|+.
T Consensus       285 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~  356 (382)
T PRK11128        285 GLMGSTTALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHL  356 (382)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            77777777776555 4677888888888888888876 5667799999887 445677799999999999986

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=100.00  E-value=1.7e-29  Score=238.17  Aligned_cols=375  Identities=11%  Similarity=0.062  Sum_probs=263.7

Q ss_pred             hhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHH
Q 013312            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP   87 (445)
Q Consensus         8 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~   87 (445)
                      |.++.+....++.+.+.....|.+|.+..|       +.+.+..+.|++.+++.++..+++++.|+++||+|||+.++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~   74 (396)
T TIGR00882         2 TNFWMFGLFFFLYFFIMSAYFPFFPIWLHD-------VNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWI   74 (396)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence            456777778888999999999999999864       3466778899999999999999999999999999999999887


Q ss_pred             HHHHHHHHHHHH---hhcCc--chhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhh
Q 013312           88 LTLSIIPLAILA---YRRSI--SFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTL  162 (445)
Q Consensus        88 ~~~~~~~~~~~~---~~~~~--~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~  162 (445)
                      ....+++.....   +.+..  ..+....+.|++.|+ +.+...+...++..|..+  ++++.++......++|.++||.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~  151 (396)
T TIGR00882        75 ISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGF-VFSAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCAS  151 (396)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-HhccchhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHH
Confidence            776665543322   22210  013445677888888 777777888888777543  3445677888888899999999


Q ss_pred             hhhhh---chhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCccccchhhhcccccCCCCCCcccccccccchhHHHH
Q 013312          163 AARFL---STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLI  239 (445)
Q Consensus       163 l~~~~---~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (445)
                      +++.+   +||.+|++.+.+.++..+..+...||++++++++ +              +.+    .++   ++++.++..
T Consensus       152 ~~g~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--------------~~~----~~~---~~~~~~~~~  209 (396)
T TIGR00882       152 IAGILFSIDPQIVFWLGSGFALILMLLLMFAKPKAPSSATVA-N--------------ALG----ANA---SAFSLKLAL  209 (396)
T ss_pred             HHhhhhccCchHHHHHHHHHHHHHHHHHHHhCCCCchhhhhh-c--------------ccc----ccc---CCCCHHHHH
Confidence            88864   8999999988887776655544444432211110 0              000    000   011122322


Q ss_pred             HHhhcchhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhc---CCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHH
Q 013312          240 CLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQF---HFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLL  316 (445)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  316 (445)
                       ...|+|.++...+..+...........+.+.|+++.+   +.+....|...+...+...++. ...+++.||+++|+.+
T Consensus       210 -~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~-~~~g~l~~r~g~~~~l  287 (396)
T TIGR00882       210 -ELFRQRKFWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIM-FCAPLIINRIGAKNAL  287 (396)
T ss_pred             -HHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccchhH
Confidence             2456666665555555555555556667888887765   4556677888888888888877 7779999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCchhHHHH-HHHHhhhhhhhhhHHHHHhcccCCccchhHHHH-HHHHHHHHHHHHHHHHHHH
Q 013312          317 SLGLFAACINMFICSISWSAWVPYAT-TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGC-ISGISSFANIVSPLIFSPL  394 (445)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~-~~~~~~~g~~i~~~~~g~l  394 (445)
                      ..+..+..+........++.+..+.. .+.+++..........+..+..|++.+++..+. .+....+|+.++|.+.|++
T Consensus       288 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l  367 (396)
T TIGR00882       288 LIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNM  367 (396)
T ss_pred             HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHH
Confidence            98888888877776767676655443 555666555555556677777888888887776 6788999999999999999


Q ss_pred             HHhhhcCCCCcccchhHHHHHHHHHHHHHH
Q 013312          395 TALFLSKGAPFNFPGFSIMCIGLASMVAFI  424 (445)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (445)
                      .|..       ++.. .+.+.+++.++..+
T Consensus       368 ~~~~-------G~~~-~f~~~~~~~~i~~~  389 (396)
T TIGR00882       368 YDSI-------GFQG-AYLVLGCIVLLFTL  389 (396)
T ss_pred             HHhc-------ccHH-HHHHHHHHHHHHHH
Confidence            9986       3333 34555555444443

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=100.00  E-value=2e-29  Score=269.08  Aligned_cols=359  Identities=15%  Similarity=0.126  Sum_probs=267.0

Q ss_pred             hHhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhH
Q 013312            6 EIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLT   85 (445)
Q Consensus         6 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~   85 (445)
                      +.+.+..++++.++..++.......+..+..+..     +.+.+....+++.+++.++..++++++|+++||+|||++++
T Consensus         7 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~   81 (1146)
T PRK08633          7 KIIGFLPLLLTQFLNAFNDLGHKILIQNTLIKAY-----DGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIR   81 (1146)
T ss_pred             hhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHc-----CcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHH
Confidence            3556666777777766665444444433333321     11233456799999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH---hhcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhh
Q 013312           86 LPLTLSIIPLAILA---YRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTL  162 (445)
Q Consensus        86 ~~~~~~~~~~~~~~---~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~  162 (445)
                      .+.++.++..++..   ..++   ++.+++.|+++|+ +.+...++..+++.|++|+++|++++++.+...++|.++||.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~---~~~l~~~r~l~G~-~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~  157 (1146)
T PRK08633         82 IVKLFEVGLTLLIVLAYYLGW---FWLAFAVTFLLGA-QSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTA  157 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHH-HHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHH
Confidence            98877666655444   3466   8999999999999 889999999999999999999999999999999999999999


Q ss_pred             hhhhhc-------------hhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCccccchhhhcccccCCCCCCcccccc
Q 013312          163 AARFLS-------------TTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVC  229 (445)
Q Consensus       163 l~~~~~-------------w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (445)
                      +++.+.             |++.+.+..+...+..++..+.+||.++.....++                      +...
T Consensus       158 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~  215 (1146)
T PRK08633        158 LFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPAAAPEVFD----------------------KKKY  215 (1146)
T ss_pred             HHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCCCCCccccc----------------------cccc
Confidence            887641             23344333333333333444556766543222100                      0000


Q ss_pred             cccchhHHHHHHhhcchhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchh-hHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013312          230 KKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKN-QFADLMLIAGLAGTISQLLFMPLLAP  308 (445)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~g~~~~~~~~~~~~~~~~~~~~l~~  308 (445)
                      ......++.++.+++++.++..++..++..........++|.|+++.+|++.. ..+++.+..+++.+++. ++.+++.|
T Consensus       216 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~-~~~g~l~~  294 (1146)
T PRK08633        216 LFPKLLWRNLKLLRSDRVLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGS-LLAGRLSG  294 (1146)
T ss_pred             ccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHH-HHHHHHhC
Confidence            01112233345566777777766666666666667788899999998999998 89999999999999988 78899999


Q ss_pred             hhcchhHHHHHHHHHHHHHHHHHhcCCchhHHH-HHHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHH
Q 013312          309 ILGEAKLLSLGLFAACINMFICSISWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVS  387 (445)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~  387 (445)
                      |+++++.+.++.++.+++.+.+.+..+.+...+ .++++++.++..+...+++.+..|++.||+++|+.+.+..++..++
T Consensus       295 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~  374 (1146)
T PRK08633        295 RHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLF  374 (1146)
T ss_pred             CceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHH
Confidence            999998888888888877777776666554444 4667888888888899999999999999999999999999999888


Q ss_pred             HHHHHHHHH
Q 013312          388 PLIFSPLTA  396 (445)
Q Consensus       388 ~~~~g~l~~  396 (445)
                      +.+.+.+..
T Consensus       375 ~~~~~~l~~  383 (1146)
T PRK08633        375 LALTTLFSG  383 (1146)
T ss_pred             HHHHHHHHH
Confidence            877666544

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=100.00  E-value=6.2e-31  Score=227.94  Aligned_cols=338  Identities=18%  Similarity=0.283  Sum_probs=246.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHhhhccchhHH
Q 013312           47 SLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSIN  126 (445)
Q Consensus        47 ~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~  126 (445)
                      +.+....|++.+.+++.+++.++.+|.++||+|||+++++|+...++...+.++++|   +..+.++|++.|+ .-|.. 
T Consensus        64 ~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~---F~afv~aR~l~Gi-~kgnl-  138 (451)
T KOG2615|consen   64 GASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRN---FAAFVLARFLGGI-FKGNL-  138 (451)
T ss_pred             cccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhh-ccCch-
Confidence            456788999999999999999999999999999999999999999999999999999   8666667999999 76766 


Q ss_pred             HHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhhhhhch------hhHHHH----HHHHHHHHHHHHHHhccCCCC
Q 013312          127 CLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLST------TSAFQA----ATIVSMLAAAYMRVFLKDDVP  196 (445)
Q Consensus       127 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~~w------~~~f~~----~~~~~~i~~~~~~~~~~e~~~  196 (445)
                      ....++++|++++|+|+++++.++.++++|.++||.+|+++..      +.+|..    ..++...-.....+++||+-+
T Consensus       139 ~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL~  218 (451)
T KOG2615|consen  139 SVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETLP  218 (451)
T ss_pred             HHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCcccc
Confidence            5799999999999999999999999999999999999998643      222322    222222223334568899866


Q ss_pred             CCCCcCCccccchhhhcccccCCCCCCcccccccccchhHHHHHHhhcch------hhHHHHHHHHHHHhhhhhhHHHHH
Q 013312          197 NDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSV------TLSQAAVVAFFSGLSEGGMQASFL  270 (445)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~  270 (445)
                      .+++.++.....+..+++    .+..+.         ...+....+++.|      ......+..+.+...+..+....+
T Consensus       219 ~rk~~~~~~~~~~~~~~~----~~~~~~---------~~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~~  285 (451)
T KOG2615|consen  219 LRKRNDEHSTLQEAADDR----LALLKF---------ARIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENTVL  285 (451)
T ss_pred             chhhcccccchhhhhhhh----hhhcch---------hhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            555541111111111100    000000         0000011111111      122234444555555555556666


Q ss_pred             HHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhc--chhHHHHHHHHHHHHHHHHHhcCCchhHHHH-HHHHh
Q 013312          271 YFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILG--EAKLLSLGLFAACINMFICSISWSAWVPYAT-TAFSV  347 (445)
Q Consensus       271 ~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~  347 (445)
                      .+..+.+|+++.+.|.+++..++.+.+.+..+ .+..||.+  .+-.+..+..++.-.++++.....+..++.. .+..+
T Consensus       286 ~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~-~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf  364 (451)
T KOG2615|consen  286 FLTHGRFGYSSMQQGKVLSTTGLLMLVIQLAL-VPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSF  364 (451)
T ss_pred             HhhcCccCCChhhheeeeehhhHHHHHHHHhc-cccccccccchhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHH
Confidence            66677899999999999999999999888444 44455554  4556666777777777777777777666664 66788


Q ss_pred             hhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 013312          348 LVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGA  403 (445)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~  403 (445)
                      ......+....++.+..|+++||+++|+....+.++.++||.+.|.+..+..+.+.
T Consensus       365 ~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws~~~~~  420 (451)
T KOG2615|consen  365 STASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWSQGAQP  420 (451)
T ss_pred             HHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEecCCCc
Confidence            88888999999999999999999999999999999999999999999887644443

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.98  E-value=2.3e-30  Score=242.48  Aligned_cols=366  Identities=14%  Similarity=0.105  Sum_probs=278.3

Q ss_pred             CcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHhhhccc
Q 013312           43 LDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCE  122 (445)
Q Consensus        43 ~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~  122 (445)
                      +++++.+..+.|++.+.++.|+.+++.+.|++.||+|-|+++..+.++.++++++..++.+.+ ++.+++.|+++|+ +.
T Consensus        65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~-~~~~~~~R~lqGl-~~  142 (466)
T KOG2532|consen   65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIG-FYLLLVLRFLQGL-GQ  142 (466)
T ss_pred             CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhc-chhhHHHHHHhHH-HH
Confidence            357888999999999999999999999999999999999999999999999999999987655 5688999999999 99


Q ss_pred             hhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhhhh-----hchhhHHHHHHHHHHHHHHHHHHhccCCCCC
Q 013312          123 GSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF-----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPN  197 (445)
Q Consensus       123 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~-----~~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~  197 (445)
                      |..+|+...+.++|.|++||++..++...+..+|.+++-.+++.     +||+++|++.+.++++..++...+..|+|++
T Consensus       143 g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~  222 (466)
T KOG2532|consen  143 GVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSK  222 (466)
T ss_pred             hHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence            99999999999999999999999999999999998887666655     5999999999999988888777777777766


Q ss_pred             CCCcCCccccchhhhcccccCCCCCCcccccccccchhHHHHHHhhcchhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhc
Q 013312          198 DDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQF  277 (445)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (445)
                      ++.-.+.  .++..++...++       ...++.+.|+++    +.+++.+|...+..+..+.+...+..+.|.|+++++
T Consensus       223 h~~is~~--El~~I~~~k~~~-------~~~~~~~vP~~~----i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL  289 (466)
T KOG2532|consen  223 HPNISEK--ELKYIEKGKSEA-------HVKKKPPVPYKA----ILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVL  289 (466)
T ss_pred             CCCCCHH--HHHHHHhccccc-------ccCCCCCCCHHH----HHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh
Confidence            4332110  000000000000       000113346666    678899999999999999999999999999999999


Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcc---------hhHHHHHHHHHHHHHHHHHhcCCch--hHHHHHHHH
Q 013312          278 HFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGE---------AKLLSLGLFAACINMFICSISWSAW--VPYATTAFS  346 (445)
Q Consensus       278 g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g  346 (445)
                      |+|..+.|++.++..+...+.. ++.|.++||+.+         |..-.++....++.++.+++.+...  ....+....
T Consensus       290 ~f~v~~~G~~salP~l~~~~~k-~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~  368 (466)
T KOG2532|consen  290 GFDVRETGFLSALPFLAMAIVK-FVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIA  368 (466)
T ss_pred             CCChhhhhHHHHHHHHHHHHHH-HHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHH
Confidence            9999999999999999999988 888999998755         2233566666677777777766432  233333333


Q ss_pred             hhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccchhHHHHHHHHHHHHHHHH
Q 013312          347 VLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQS  426 (445)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (445)
                      .+..+..............+++.+..+|+.+....+.++++|.+.|.+...  +  ....|.. .|++.+++.+++.+..
T Consensus       369 ~~~~g~~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~--~--t~~eW~~-VF~i~a~i~~~~~i~f  443 (466)
T KOG2532|consen  369 IGLSGFNISGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVTD--N--TREEWRI-VFLIAAGILIVGNIIF  443 (466)
T ss_pred             HHHcccchhhhHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeCC--C--CHHHHHH-HHHHHHHHHHHhchhe
Confidence            333333333333322222458899999999999999999999999998841  1  1112333 4677777777666555


Q ss_pred             Hhc
Q 013312          427 LMM  429 (445)
Q Consensus       427 ~~~  429 (445)
                      ...
T Consensus       444 ~~f  446 (466)
T KOG2532|consen  444 LFF  446 (466)
T ss_pred             eEe
Confidence            444

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.97  E-value=4.3e-31  Score=235.54  Aligned_cols=366  Identities=14%  Similarity=0.167  Sum_probs=262.8

Q ss_pred             hhhHhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhH
Q 013312            4 EKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAM   83 (445)
Q Consensus         4 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~   83 (445)
                      ++..+.+.++++...+...+.+.+..+.+...        +.++++....|++++.+.+.+.+++|+.|+++||++||++
T Consensus        29 ~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~--------~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v  100 (493)
T KOG1330|consen   29 KSPTLTLVILCLVNLMNYADRYTIAGVLKEVQ--------TYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRV  100 (493)
T ss_pred             ccchHHHHHHHHHHHHHHhhhhhhhhhhHHHH--------HhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceE
Confidence            33456678888899999999988887777765        4457777888999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhh
Q 013312           84 LTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLA  163 (445)
Q Consensus        84 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l  163 (445)
                      +.+|..++.++.++++++..   +|++.++|.+.|+ |.+.+.|..+++++|.+|+++|++++++++....+|..+|.+.
T Consensus       101 ~~vG~~iW~~Av~~~~fs~~---Fwq~~l~R~~vGi-GeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vv  176 (493)
T KOG1330|consen  101 IAVGIFIWTLAVFASGFSNH---FWQVLLCRGFVGI-GEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVV  176 (493)
T ss_pred             EeeHHHHHHHHHHHHHHHHH---HHHHHHHHHHhcc-chhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEe
Confidence            99999999999999999988   9999999999999 9999999999999999999999999999999999998888777


Q ss_pred             hhhh-----chhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCccccchhhhcccccCCCCCCcccccccccchhHHH
Q 013312          164 ARFL-----STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDL  238 (445)
Q Consensus       164 ~~~~-----~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (445)
                      +...     .|||.|+..+++++++.++..++.+|+++...++.+.               +    .+........+++.
T Consensus       177 gs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~~~---------------~----~~~~~~~ts~~kDl  237 (493)
T KOG1330|consen  177 GSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERGARDEVDG---------------E----NKMVKPFTSVWKDL  237 (493)
T ss_pred             eeeeccCccceEEEEEeehHHHHHHHHHHHhhccCccccccccccc---------------C----CcCCCCccchHHHH
Confidence            6653     4999999999999999999988888877643332110               0    00011222344553


Q ss_pred             HHHhhcchhhHHHHHHHHHHHhhhhhhHHHHHHHHHh---hcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcch--
Q 013312          239 ICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKA---QFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEA--  313 (445)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~--  313 (445)
                       +.+.+++.+....+......+..+++.-+.|.+...   ..|++....-++..+...++.+|. +.+|.++||+.++  
T Consensus       238 -~~l~~~~v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGv-l~Ggiisd~~~~~~~  315 (493)
T KOG1330|consen  238 -KVLAKIKVFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGV-LFGGIISDKLSRIFP  315 (493)
T ss_pred             -HHHHccCceeeehHHHHHHHHhccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhh-eehHHHHHHHHHhcc
Confidence             334455555555555666666666665566654433   335565565556667777777777 7788888884321  


Q ss_pred             --hHHHHHHHHH-------HHHHHHHHhcC--CchhHHHHHHHHhhhhhhh-hhHHHHHhcccCCccchhHHHHHHHHHH
Q 013312          314 --KLLSLGLFAA-------CINMFICSISW--SAWVPYATTAFSVLVVFAT-PSFRSIVSKQVGPNEQGKAQGCISGISS  381 (445)
Q Consensus       314 --~~~~~~~~~~-------~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~g~~~g~~~~~~~  381 (445)
                        ....+..+..       +..+.+.....  +.+..+..+++|....... ....-+..+.+|+++|.++.++...+..
T Consensus       316 ~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h  395 (493)
T KOG1330|consen  316 NSGTLRASQLSAALGAPLSIPFLFLFPAFTSSSMIFGLILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEH  395 (493)
T ss_pred             cccchhHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHHHHH
Confidence              1112111111       11111111122  2222333344444443333 3444567889999999999999988886


Q ss_pred             H-HHHHHHHHHHHHHHhhhcCC
Q 013312          382 F-ANIVSPLIFSPLTALFLSKG  402 (445)
Q Consensus       382 ~-g~~i~~~~~g~l~~~~~~~~  402 (445)
                      + |.+-+|.+.|.+.|+..+++
T Consensus       396 ~fgd~~~p~ivGilsd~l~g~~  417 (493)
T KOG1330|consen  396 IFGDAASPYIVGILSDKLRGYK  417 (493)
T ss_pred             HhccCCCcceehhHHHHhhCCC
Confidence            5 55556669999999986655

>TIGR00901 2A0125 AmpG-related permease

Probab=99.97  E-value=6.2e-29  Score=231.19  Aligned_cols=318  Identities=15%  Similarity=0.066  Sum_probs=237.4

Q ss_pred             HHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhcccccccc-----CchhHh-HHHHHHHHHHHHH
Q 013312           24 TMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQY-----GRKAML-TLPLTLSIIPLAI   97 (445)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~-----Grr~~l-~~~~~~~~~~~~~   97 (445)
                      ..+..+.+|.+.+|        .+++..+.|+..+. .+...+ .+++|+++||+     ||||.+ +.+.+..++....
T Consensus         4 ~~~~~~~~~~~~~~--------~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~   73 (356)
T TIGR00901         4 LGLVGNTLPYWLRS--------KNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLI   73 (356)
T ss_pred             chhHHhHHHHHHHH--------cCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHH
Confidence            35667788888754        36777888888655 555555 89999999998     898874 6777888888777


Q ss_pred             HHhhcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhhhh----hc-----
Q 013312           98 LAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF----LS-----  168 (445)
Q Consensus        98 ~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~----~~-----  168 (445)
                      .++.++....+.+....++.+. +.+...++..+++.|++|+|+|+++.++...+..+|.++++.+++.    .+     
T Consensus        74 l~~~~~~~~l~~l~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~  152 (356)
T TIGR00901        74 LSFLVPSTDLPLLAGLAFLIAF-FSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGL  152 (356)
T ss_pred             HHcCCcchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Confidence            7777543337777888888888 7788889999999999999999999999999999999999988864    46     


Q ss_pred             ---hhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCccccchhhhcccccCCCCCCcccccccccchhHHHHHHhhcc
Q 013312          169 ---TTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSS  245 (445)
Q Consensus       169 ---w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (445)
                         ||..|++.++..++..+..++..||++++++++                           +++.++.++.++.++++
T Consensus       153 ~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~  205 (356)
T TIGR00901       153 ITLWGYIFFWTALLILPGLLVTLFLAKEPQEDASVP---------------------------KPLTQAVLKPIREFFQR  205 (356)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHhccCCCcccccc---------------------------hhHHHHHHHHHHHHHHh
Confidence               999999999877665555444556643211100                           00001122233334455


Q ss_pred             hh---hHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHH-HHHHHHHHHHHHhhhhhcchhHHHHHHH
Q 013312          246 VT---LSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGL-AGTISQLLFMPLLAPILGEAKLLSLGLF  321 (445)
Q Consensus       246 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~  321 (445)
                      |.   ++...+..++..........+.|.|+++ .|+++.+.+......+. ..+++. ++.+++.||+|+|+.+..+.+
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~-~~~g~l~~r~g~~~~l~~~~~  283 (356)
T TIGR00901       206 KNMIQALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGG-LIGGIIMQPLNILYALLLFGI  283 (356)
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHH-HHHHHHHhhhhHHHHHHHHHH
Confidence            54   6656666666777777888999999988 89999999988887774 455665 888999999999998888888


Q ss_pred             HHHHHHHHHHhc-----------CCchhHHHH-HHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHH
Q 013312          322 AACINMFICSIS-----------WSAWVPYAT-TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISS  381 (445)
Q Consensus       322 ~~~~~~~~~~~~-----------~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~  381 (445)
                      +..+....+.+.           ++.+..... ++.+++.+...+...++.+|.+|+++||+.+|+.+...+
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       284 VQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             HHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence            777766654432           222333333 556888899999999999999999999999999887765

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.97  E-value=2e-28  Score=234.49  Aligned_cols=344  Identities=14%  Similarity=0.105  Sum_probs=256.3

Q ss_pred             HHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccc----cCchh-HhHHHHHHHH
Q 013312           18 FLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQ----YGRKA-MLTLPLTLSI   92 (445)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr----~Grr~-~l~~~~~~~~   92 (445)
                      +...+..++..+.++.+..       ++++++..+.|++.++..+..++..|+.|+++||    +|||| .++.+....+
T Consensus         9 ~~~~~~~~~~~~~l~~~~~-------~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~   81 (437)
T TIGR00792         9 FGNNFIFAIVSTYLLFFYT-------DVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFS   81 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHH-------HccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHH
Confidence            3344555666666777765       4557888999999999999999999999999997    67755 5667888888


Q ss_pred             HHHHHHHhhcCcc---hhHHHHHHHHHhhhccchhHHHHHHHHHhcCC-CccchhhHHHHHHHHHhhhhhhhhhhhh---
Q 013312           93 IPLAILAYRRSIS---FFYAYYALRTLTAMVCEGSINCLALAYVADNI-SERQRASAFGILLGVLSASFVCGTLAAR---  165 (445)
Q Consensus        93 ~~~~~~~~~~~~~---~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~g~~l~~---  165 (445)
                      ++.+++.+.++.+   ....+++.+++.++ +.+...+...++..|.. +++||++..++.+....+|..+++.+.+   
T Consensus        82 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~  160 (437)
T TIGR00792        82 IVLVLLFTTPDFSATGKLVYAYITYILLGL-FYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLV  160 (437)
T ss_pred             HHHHHHHhCCCCCcchHHHHHHHHHHHHHH-HHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888887776532   14567778888888 66776677788889987 4689999999988888787655433321   


Q ss_pred             --------hhchhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCccccchhhhcccccCCCCCCcccccccccchhHH
Q 013312          166 --------FLSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRD  237 (445)
Q Consensus       166 --------~~~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (445)
                              ..+||+.+.+.+++.++..+...+..||++++.+++                           ++++.+.++
T Consensus       161 ~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~---------------------------~~~~~~~~~  213 (437)
T TIGR00792       161 SYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERYSEIPKN---------------------------IEKKLSLKQ  213 (437)
T ss_pred             HHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCCCCcc---------------------------cccCCCHHH
Confidence                    247999999998888777766666777754211110                           001113455


Q ss_pred             HHHHhhcchhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHH
Q 013312          238 LICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLS  317 (445)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  317 (445)
                      .++.++++|.++...+..++..........+.+.|.++.++ ++.+.+.+.....+..+++. ++.+++.||+|+|+.+.
T Consensus       214 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~-~~~~~l~~r~g~~~~~~  291 (437)
T TIGR00792       214 IFKALFKNDQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGV-LLFPRLVKKFGRKILFA  291 (437)
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCcHHHHH
Confidence            56667788888877777777777766666666777766555 55666777777788888887 77799999999999999


Q ss_pred             HHHHHHHHHHHHHHhcC-CchhHHH-HHHHHhhhhhhhhhHHHHHhcccC-------CccchhHHHHHHHHHHHHHHHHH
Q 013312          318 LGLFAACINMFICSISW-SAWVPYA-TTAFSVLVVFATPSFRSIVSKQVG-------PNEQGKAQGCISGISSFANIVSP  388 (445)
Q Consensus       318 ~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~-------~~~~g~~~g~~~~~~~~g~~i~~  388 (445)
                      .+..+..++.+.+.+.+ +.+.... ..+.+++.+...+..+++.+|..|       ++.+|++.|+.+....+|..+++
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~  371 (437)
T TIGR00792       292 GGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAG  371 (437)
T ss_pred             HHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHH
Confidence            99888888777666643 3333333 356678888888888999888765       45679999999999999999999


Q ss_pred             HHHHHHHHhh
Q 013312          389 LIFSPLTALF  398 (445)
Q Consensus       389 ~~~g~l~~~~  398 (445)
                      .+.|.+.+..
T Consensus       372 ~i~g~ll~~~  381 (437)
T TIGR00792       372 FLVGLILGII  381 (437)
T ss_pred             HHHHHHHHHc
Confidence            9999999976

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.97  E-value=9.7e-28  Score=229.68  Aligned_cols=380  Identities=10%  Similarity=-0.019  Sum_probs=264.3

Q ss_pred             hhhHhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccc-cCchh
Q 013312            4 EKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQ-YGRKA   82 (445)
Q Consensus         4 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr-~Grr~   82 (445)
                      .++++.++.+++..+...++.+...+.+|.|+++.     .+++.+..+.|++.+.+.++..++++++|+++|| +|||+
T Consensus         6 ~~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~-----~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~   80 (475)
T TIGR00924         6 FGHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQ-----AGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKK   80 (475)
T ss_pred             cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHH
Confidence            34567788889999999999999999999998642     2367778899999999999999999999999999 89999


Q ss_pred             HhHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccc---hhhHHHHHHHHHhhhhhh
Q 013312           83 MLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQ---RASAFGILLGVLSASFVC  159 (445)
Q Consensus        83 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~g~~~  159 (445)
                      ++.++.++.+++.++.+++++   ++.+++.|.+.|+ +.|...|...++++|++|+++   |++++++++...++|..+
T Consensus        81 ~l~~~~~~~~~g~~~~~~~~~---~~~~~~~~~l~g~-g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~i  156 (475)
T TIGR00924        81 TMVLGGIVLMLGHFMLAMSIY---PDLIFYGLGTIAV-GSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFI  156 (475)
T ss_pred             HHHHHHHHHHHHHHHHHhccc---HhHHHHHHHHHHh-ccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHH
Confidence            999999999999999999888   8888899999999 888888999999999998754   888999999999999999


Q ss_pred             hhhhhhh----hchhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCcC-Ccc-ccchhhhc-------------c--cccC
Q 013312          160 GTLAARF----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDD-LTR-PIITEETE-------------G--VNQN  218 (445)
Q Consensus       160 g~~l~~~----~~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~-~~~-~~~~~~~~-------------~--~~~~  218 (445)
                      ||.+++.    .+|++.|.+.++..++..+. +...++..++.++++ +.+ +..+....             .  ...+
T Consensus       157 g~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (475)
T TIGR00924       157 SPLLAGVIAENYGYHVGFNLAAVGMVIGLLT-FFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWLMHH  235 (475)
T ss_pred             HHHHHHHHHHhcChHHHHHHHHHHHHHHHHH-HHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9998876    48999999888655444333 333332221111100 000 00000000             0  0000


Q ss_pred             CCCCCc-------------ccccccccchhHHHHHHhhcchhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhh--
Q 013312          219 ESNSPV-------------KIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQ--  283 (445)
Q Consensus       219 ~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--  283 (445)
                      ....+.             .+...++.....+    ..|.+.+..+++...+....+....+.++.+.++..+.+...  
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~  311 (475)
T TIGR00924       236 VVIANILLMTVTLAVIIFFFRLAFKPRLDAVA----RNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMS  311 (475)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhccCCHHH----HhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceE
Confidence            000000             0000000000000    011123444455555666666667777888887754444222  


Q ss_pred             --HHHHHHHHHHHHHHHHHHHHH---Hhhhh-hcchhHH--HHHHHHHHHHHHHHHh---------cCCchhHHH-HHHH
Q 013312          284 --FADLMLIAGLAGTISQLLFMP---LLAPI-LGEAKLL--SLGLFAACINMFICSI---------SWSAWVPYA-TTAF  345 (445)
Q Consensus       284 --~g~~~~~~~~~~~~~~~~~~~---~l~~~-~~~~~~~--~~~~~~~~~~~~~~~~---------~~~~~~~~~-~~~~  345 (445)
                        .+++.+..++..++.+.++..   ++.|| .+++...  .+|+++.++++..+.+         ..+.|..+. ..+.
T Consensus       312 ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~  391 (475)
T TIGR00924       312 VPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQ  391 (475)
T ss_pred             ECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHH
Confidence              678888888888888744332   33333 2223333  6778888878777664         234454444 4788


Q ss_pred             HhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013312          346 SVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTAL  397 (445)
Q Consensus       346 g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~  397 (445)
                      +++.....|..++++.+..|++.||+.+|+......+|..+++.+.+...+.
T Consensus       392 ~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~  443 (475)
T TIGR00924       392 TLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVP  443 (475)
T ss_pred             HHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999999999999988887766543

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.97  E-value=3.1e-27  Score=207.93  Aligned_cols=348  Identities=16%  Similarity=0.136  Sum_probs=282.3

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHHH
Q 013312            9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL   88 (445)
Q Consensus         9 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~   88 (445)
                      .+..+....++..+......+.+|.+.        +.++++..+.++++.+++.++.+.+++.|++.+|+|+|+-++.++
T Consensus        14 ~~v~~t~lFfl~G~~~~l~diLip~l~--------~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL   85 (422)
T COG0738          14 AFVLLTSLFFLWGFITCLNDILIPHLK--------EVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGL   85 (422)
T ss_pred             HHHHHHHHHHHHHHHhhcchhhHHHHH--------HHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHH
Confidence            344445555667777888889999886        445888899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhhhhh-
Q 013312           89 TLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL-  167 (445)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~-  167 (445)
                      .++++++.+..-+.+...+..++++-++.|. |.+...++++.+++...|+++..+.+++.+..+++|.++||.+++.+ 
T Consensus        86 ~l~avg~~lF~pAa~~~~y~~FL~~lFila~-Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~li  164 (422)
T COG0738          86 LLYAVGAALFWPAASSKSYGFFLVALFILAS-GIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLI  164 (422)
T ss_pred             HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHh-hhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            9999999999755444448999999999999 99999999999999999999899999999999999999999988763 


Q ss_pred             ----------------------chhhHHHHHHHHHHHHHHHHH-HhccCCCCCCCCcCCccccchhhhcccccCCCCCCc
Q 013312          168 ----------------------STTSAFQAATIVSMLAAAYMR-VFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPV  224 (445)
Q Consensus       168 ----------------------~w~~~f~~~~~~~~i~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (445)
                                            .||++|...+....+..+... ...|+.++..+++                       
T Consensus       165 ls~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~~~~~-----------------------  221 (422)
T COG0738         165 LSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVAAPSL-----------------------  221 (422)
T ss_pred             HhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCcccccc-----------------------
Confidence                                  256777777665444333321 1222222111110                       


Q ss_pred             ccccccccchhHHHHHHhhcchhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 013312          225 KIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMP  304 (445)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~  304 (445)
                         .+++ +.   .....+++|.++...+..+++-.......++++.|+.+..|.+..+.+...+....+.++|+ +++.
T Consensus       222 ---~~~~-~~---~~~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGR-Fig~  293 (422)
T COG0738         222 ---GASG-SA---GLSSLFQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGR-FIGS  293 (422)
T ss_pred             ---cccc-cc---hHHHHHhChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHH-HHHH
Confidence               0000 00   22336678888888999999999999999999999999789999999999999999999999 7778


Q ss_pred             HhhhhhcchhHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHH
Q 013312          305 LLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFAN  384 (445)
Q Consensus       305 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~  384 (445)
                      ++.+|++..+.+.....+..+.++...+.++.+.++...+.|++.+..+|...+...+..| + ..+..|..-.+..+|+
T Consensus       294 ~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g~v~~~~l~~ig~F~simfPTIfslal~~l~-~-~ts~~s~~l~maivGG  371 (422)
T COG0738         294 ALMSRIKPEKYLAFYALIAILLLLAVALIGGVVALYALFLIGLFNSIMFPTIFSLALKNLG-E-HTSVGSGLLVMAIVGG  371 (422)
T ss_pred             HHHHHhCHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHhHHHHHHHHHHHHhccC-c-cccccceeeeeheecc
Confidence            8888999999988888877777788888888888888899999999999999999999998 3 3445555667788899


Q ss_pred             HHHHHHHHHHHHhh
Q 013312          385 IVSPLIFSPLTALF  398 (445)
Q Consensus       385 ~i~~~~~g~l~~~~  398 (445)
                      ++.|.+.|++.|..
T Consensus       372 AiiP~l~G~i~d~~  385 (422)
T COG0738         372 AIIPPLQGVIADMF  385 (422)
T ss_pred             hHHHHHHHHHHHhh
Confidence            99999999999987

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=9.1e-30  Score=222.08  Aligned_cols=352  Identities=18%  Similarity=0.166  Sum_probs=272.0

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhHHHHHHHhcC------------------------------------------CCCcchh
Q 013312           10 LSHLFVTVFLWGFATMMVVPAITDVTMMALC------------------------------------------PGLDECS   47 (445)
Q Consensus        10 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~~~~~   47 (445)
                      +..+.++.+++.+-...+.|.+|.|.+|.-+                                          .+..+.+
T Consensus        23 lviv~ialllDnmL~~vivPiiP~~L~d~~~~p~~~~~~~~is~~~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~~~~~~  102 (464)
T KOG3764|consen   23 LVIVSIALLLDNMLYTVIVPIIPGYLYDIQAEPTIIQPFFPISTAPIPPGSMSSFSSLNISTESTNASAGKSPAEAISLD  102 (464)
T ss_pred             EEEEehhhhccCccceeeeccCccHHHHhccCCccCccccccccCCCCCccccceecccCCccccccccccCchhccCcc
Confidence            4456677788888889999999999988431                                          0013345


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHhhhccchhHHH
Q 013312           48 LAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINC  127 (445)
Q Consensus        48 ~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~  127 (445)
                      ....++|++.+...+.+.+.+|+.|.+.||+|+|..++++++....+++++++.++   ++.++++|.+||+ +.+..+.
T Consensus       103 ~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~s---y~~l~vAR~LQgv-gsA~~~t  178 (464)
T KOG3764|consen  103 RENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNS---YPMLFVARSLQGV-GSAFADT  178 (464)
T ss_pred             ccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcch---hHHHHHHHHHhhh-hHHHHHh
Confidence            56688999999999999999999999999999999999999999999999999999   9999999999999 9999999


Q ss_pred             HHHHHHhcCCCcc-chhhHHHHHHHHHhhhhhhhhhhhhhh----chhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCcC
Q 013312          128 LALAYVADNISER-QRASAFGILLGVLSASFVCGTLAARFL----STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDD  202 (445)
Q Consensus       128 ~~~~~i~~~~~~~-~r~~~~~~~~~~~~~g~~~g~~l~~~~----~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~  202 (445)
                      +..++++|.+|++ ||++++|+...+.++|.++||..|+.+    |.+.+|++.+++.++...+..+.+++++.+++.. 
T Consensus       179 sglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~~~~-  257 (464)
T KOG3764|consen  179 SGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMDPDST-  257 (464)
T ss_pred             hhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccCcccc-
Confidence            9999999999975 589999999999999999999999984    8999999999999888877766666544333211 


Q ss_pred             CccccchhhhcccccCCCCCCcccccccccchhHHHHHHhhcchhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchh
Q 013312          203 LTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKN  282 (445)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  282 (445)
                                                 .+..++++    +.++|.++.........+.........++.+..|.+.-+..
T Consensus       258 ---------------------------~~~~~~~~----Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w  306 (464)
T KOG3764|consen  258 ---------------------------EQGTPMWS----LLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGW  306 (464)
T ss_pred             ---------------------------ccCccHHH----HHhCchHhhhhcchhhccchHHHhCcccHHHHHHhccCCCc
Confidence                                       11123333    45677777666666666667777788888988888885555


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhhhcchh--HHHHHHHHHHHHHHHHHhcCCchhHHH-HHHHHhhhhhhhhhHHHH
Q 013312          283 QFADLMLIAGLAGTISQLLFMPLLAPILGEAK--LLSLGLFAACINMFICSISWSAWVPYA-TTAFSVLVVFATPSFRSI  359 (445)
Q Consensus       283 ~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~  359 (445)
                      +.|..+....+...++. .+.+.+.||+++.+  ....+.+...++.....+.++...+++ ....+++.+.......-.
T Consensus       307 ~~G~~fLp~~~~y~ig~-~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~L~vp~~~l~~~i~~~dasl~P~  385 (464)
T KOG3764|consen  307 EVGLAFLPASLSYAIGT-NLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQLWVPNFGLGFGIGLADASLIPT  385 (464)
T ss_pred             ceeeeecccccchhccC-chHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHHHhhhhHHHHHHHHHHHHHHhhh
Confidence            88999999999999998 77789999999433  344455555555555566665544333 233344444433333322


Q ss_pred             H---hcccCCc---cchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013312          360 V---SKQVGPN---EQGKAQGCISGISSFANIVSPLIFSPLTALF  398 (445)
Q Consensus       360 ~---~~~~~~~---~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~  398 (445)
                      .   .|....+   ..|.+.++......+|.++||.++|.+++..
T Consensus       386 l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~i  430 (464)
T KOG3764|consen  386 LGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAI  430 (464)
T ss_pred             hHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeeh
Confidence            2   2222223   6789999999999999999999999999887

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.97  E-value=5.1e-26  Score=214.11  Aligned_cols=367  Identities=13%  Similarity=0.102  Sum_probs=251.7

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHH--HHHHHHHHHHhhhhccc-cccccCchhHhHH
Q 013312           10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQ--QAIIGLGTLVMMPVIGN-LSDQYGRKAMLTL   86 (445)
Q Consensus        10 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~--~s~~~l~~~~~~~~~G~-l~Dr~Grr~~l~~   86 (445)
                      +..+....+...+..++..|.+|.+.+|.        +.+..++|++  .+...+...+.+|++++ .+||+||||.+++
T Consensus         3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~--------g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~   74 (390)
T TIGR02718         3 VITLGLLYLSQGIPIGLAMDALPTLLRED--------GAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVL   74 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHc--------CCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHH
Confidence            34455666778888899999999999753        5666888997  46778889899999955 7999999999766


Q ss_pred             HHHH-HHHHHHHHH-hhcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhh
Q 013312           87 PLTL-SIIPLAILA-YRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAA  164 (445)
Q Consensus        87 ~~~~-~~~~~~~~~-~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~  164 (445)
                      ...+ .+......+ +........+++..-++.++ ..+...+..+++..|..++++++...+....+..+|.++|+...
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~  153 (390)
T TIGR02718        75 PMQCLVSACLASLALVGPDVAGAGWAVGLLACASL-ASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGT  153 (390)
T ss_pred             HHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            5533 232222222 21111113344455555666 66778888999999999988888888888888888988888544


Q ss_pred             h----hhchhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCccccchhhhcccccCCCCCCcccccccccchhHHHHH
Q 013312          165 R----FLSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLIC  240 (445)
Q Consensus       165 ~----~~~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (445)
                      +    .++||.+|++.+++.++..+...+ .+|++++++++                          +.+   ..++.. 
T Consensus       154 ~~l~~~~gw~~~f~~~a~l~~~~~~~~~~-~~~~~~~~~~~--------------------------~~~---~~~~~~-  202 (390)
T TIGR02718       154 LVLFGKFGQRPAFLLVACVPLASLVCVLW-LKDRAVASPEA--------------------------PLA---RRASLF-  202 (390)
T ss_pred             HHHHHHhCHHHHHHHHHHHHHHHHHHHHH-cCCCCcCcccc--------------------------chh---hHHHHH-
Confidence            3    469999999999887766555534 44332211110                          000   112222 


Q ss_pred             HhhcchhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHH
Q 013312          241 LLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGL  320 (445)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  320 (445)
                      ...|+|.++......++..........+.+.|++| .|+++++.|.+....+....+.+.+..|++.||+++|+.+..+.
T Consensus       203 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~  281 (390)
T TIGR02718       203 RFFRRPLAWSLLALALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGV  281 (390)
T ss_pred             HHHcCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            24566767777777777777777888899999988 69999999999888876554443378899999999999888777


Q ss_pred             HHHHHHHHHHHh-c-----CCchhHHHH-HHHHhhhhhhhhhHHHHHhcccCC-ccchhHHHHHHHHHHHHHHHHHHHHH
Q 013312          321 FAACINMFICSI-S-----WSAWVPYAT-TAFSVLVVFATPSFRSIVSKQVGP-NEQGKAQGCISGISSFANIVSPLIFS  392 (445)
Q Consensus       321 ~~~~~~~~~~~~-~-----~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~i~~~~~g  392 (445)
                      .+..+..+.... .     ++.+..... .+.++..+...+...+...+..++ +.+|+.++..+...++|..++|.+.|
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G  361 (390)
T TIGR02718       282 GLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAG  361 (390)
T ss_pred             HHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            655333222211 1     111222222 333455677777788887777766 88999999999999999999999999


Q ss_pred             HHHHhhhcCCCCcccchhHHHHHHHHHHHHHHH
Q 013312          393 PLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQ  425 (445)
Q Consensus       393 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (445)
                      .++|+.       ++.. .+...+++.+++...
T Consensus       362 ~l~~~~-------G~~~-~f~~~~~~~l~a~~~  386 (390)
T TIGR02718       362 YLTDRF-------GYAG-GFLSGTVLAVLAILL  386 (390)
T ss_pred             HHHHHH-------ccHH-HHHHHHHHHHHHHHH
Confidence            999986       3322 355555555555443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.96  E-value=5.6e-27  Score=224.40  Aligned_cols=374  Identities=10%  Similarity=0.059  Sum_probs=250.7

Q ss_pred             CcchhhHhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccc-cC
Q 013312            1 MGMEKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQ-YG   79 (445)
Q Consensus         1 m~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr-~G   79 (445)
                      |++++.+|.++.++...+...++++...+.++.|+++.       ++.+....+++.+.+.....+..++.|+++|| +|
T Consensus         7 ~~~~~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~-------lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G   79 (489)
T PRK10207          7 MGLLQQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQ-------LGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLG   79 (489)
T ss_pred             cchhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccc
Confidence            44445567788888888999999999999999998753       45555667888888998888889999999999 99


Q ss_pred             chhHhHHHHHHHHHHHHHHHhhcCcchhHH-HHHHHHHhhhccchhHHHHHHHHHhcCCCcc--chhhHHHHHHHHHhhh
Q 013312           80 RKAMLTLPLTLSIIPLAILAYRRSISFFYA-YYALRTLTAMVCEGSINCLALAYVADNISER--QRASAFGILLGVLSAS  156 (445)
Q Consensus        80 rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~g  156 (445)
                      |||+++.+.++++++.+.++++++   ... ++++|.++|+ +.|...|...+++.|.+|++  +|+++++++....++|
T Consensus        80 ~r~~~~~g~~~~~~g~~~~~~~~~---~~~ll~~~~~l~~i-g~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig  155 (489)
T PRK10207         80 TKRTIVLGAIVLAIGYFMTGMSLL---KPDLIFIALGTIAV-GNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIG  155 (489)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhcc---chhHHHHHHHHHHh-ccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHH
Confidence            999999999999999999999876   343 5589999999 88988899999999999876  4577899999999999


Q ss_pred             hhhhhhhhhh----hchhhHHHHHHHHHHHHHHHHHHhccCCCCCCC-----CcCCccccchhh---------hcccccC
Q 013312          157 FVCGTLAARF----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDD-----DDDLTRPIITEE---------TEGVNQN  218 (445)
Q Consensus       157 ~~~g~~l~~~----~~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~-----~~~~~~~~~~~~---------~~~~~~~  218 (445)
                      ..+||.+++.    +|||+.|++.++ .++..++.+...++..++.+     ++.|.++.....         .....+.
T Consensus       156 ~~~g~~l~g~l~~~~gw~~~F~i~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~  234 (489)
T PRK10207        156 SLISLSLAPVIADKFGYSVTYNLCGA-GLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHN  234 (489)
T ss_pred             HHHHHHHHHHHHHhhChHHHHHHHHH-HHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence            9888877765    599999998754 33333333333443221111     111111110000         0000000


Q ss_pred             CCCCCcc------------cccccccchhHHHHHHhhcchhhHHHH--HHHHHHHhhhhhhHHHHHHHHHhhcCCchh--
Q 013312          219 ESNSPVK------------IPVCKKIPSIRDLICLLRSSVTLSQAA--VVAFFSGLSEGGMQASFLYFLKAQFHFNKN--  282 (445)
Q Consensus       219 ~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--  282 (445)
                      .......            -.++++.+       ...|+|.+....  +...+....+......++.|.++..+.+..  
T Consensus       235 ~~~~~~~~~~~~~i~~~~f~~~~~~~~-------~~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~  307 (489)
T PRK10207        235 VEVANLVLIVLSIVVTIIFFREAFKLD-------KTGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGF  307 (489)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccce
Confidence            0000000            00000000       122333333222  223344445555557778888753333211  


Q ss_pred             --hHHHHHHHHHHHHHHHHHHHHHHhhhhhcchh-------HHHHHHHHHHHHHHHHH-----hc-----CCchhHHH-H
Q 013312          283 --QFADLMLIAGLAGTISQLLFMPLLAPILGEAK-------LLSLGLFAACINMFICS-----IS-----WSAWVPYA-T  342 (445)
Q Consensus       283 --~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~-----~~-----~~~~~~~~-~  342 (445)
                        ..+.+.+...+..++.. .+.+++.||.++|+       -+..|+++.+++++.+.     ..     .+.|.... .
T Consensus       308 ~i~~~~~~~~n~~~iii~~-pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~  386 (489)
T PRK10207        308 SINPVSFQALNPFWVVVAS-PILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVY  386 (489)
T ss_pred             EECHHHHHhHhHHHHHHHH-HHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHH
Confidence              22445555656666666 55679999999886       36677777776664331     21     12333333 4


Q ss_pred             HHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 013312          343 TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPL  394 (445)
Q Consensus       343 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l  394 (445)
                      .+.+++.....|...+.+.+..|++.+|.++|+.+...++|+.++..+....
T Consensus       387 ~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~  438 (489)
T PRK10207        387 LFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFT  438 (489)
T ss_pred             HHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            7779999999999999999999999999999999999999999988777654

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.96  E-value=9e-26  Score=209.35  Aligned_cols=373  Identities=19%  Similarity=0.229  Sum_probs=271.2

Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccC-chhHhHHHHHHH
Q 013312           13 LFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYG-RKAMLTLPLTLS   91 (445)
Q Consensus        13 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~G-rr~~l~~~~~~~   91 (445)
                      +....++.++..+...|.+|.++++        .+.+..++|.+.+...+...+.++++|.++||.+ +||.+.+..++.
T Consensus         7 Ls~~~f~~f~~~G~~~p~~~~~L~~--------~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~   78 (400)
T PF03825_consen    7 LSLMYFLYFFAYGAFLPYLPLYLES--------RGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLS   78 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHH
Confidence            4556677888889999999999864        3677789999999999999999999999999986 578888888888


Q ss_pred             HHHHHHHHhhcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhh-----hhhh
Q 013312           92 IIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTL-----AARF  166 (445)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~-----l~~~  166 (445)
                      ++........++   ++.+++.-++..+ ......|...++..+..+  ++++-.|......++|.+++..     +.+.
T Consensus        79 ~~~~~~~~~~~~---f~~~~~~~~l~~~-~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~  152 (400)
T PF03825_consen   79 ALALLLLAFSSS---FWWLFVIMLLFSF-FFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGY  152 (400)
T ss_pred             HHHHHHHHHhcc---HHHHHHHHHHHHH-HHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhh
Confidence            887777777888   8888888887777 566677888888888776  3344566666667777666633     2233


Q ss_pred             hch---hhHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCccccchhhhcccccCCCCCCcccccccccchhHHHHHHhh
Q 013312          167 LST---TSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLR  243 (445)
Q Consensus       167 ~~w---~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (445)
                      .++   ...+++.+...++.... .+.+|+.|++++.++                          ..++...++.++ +.
T Consensus       153 ~~~~~~~~~~~i~~~~~~ll~~~-~l~lp~~~~~~~~~~--------------------------~~~~~~~~~~~~-ll  204 (400)
T PF03825_consen  153 LGISGTSLIFYIAAILSLLLAGF-ALFLPKTPPKRSAKE--------------------------SVKKLLGLDALK-LL  204 (400)
T ss_pred             hccccccHHHHHHHHHHHHHHHH-HHhCCCCccccccCC--------------------------CcccccchHHHH-Hh
Confidence            222   34566666554443332 356787663222210                          001112233333 45


Q ss_pred             cchhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHH
Q 013312          244 SSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAA  323 (445)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  323 (445)
                      |+|++...++..++.+.....++.+.+.|+++.-|.+....+...+...+..++.- ...+++.+|+|.++++.++....
T Consensus       205 k~~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f-~~~~~~~~r~g~~~ll~~a~~~~  283 (400)
T PF03825_consen  205 KNPRFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFF-FFSGRFLKRFGIKWLLLLALVAY  283 (400)
T ss_pred             cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHH-HHHHHHHHhcCHHHHHHHHHHHH
Confidence            66777777888888888899999999999999544777888888887777777765 88899999999999999999999


Q ss_pred             HHHHHHHHhc-CCchhHHHH-----HHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 013312          324 CINMFICSIS-WSAWVPYAT-----TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGIS-SFANIVSPLIFSPLTA  396 (445)
Q Consensus       324 ~~~~~~~~~~-~~~~~~~~~-----~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~-~~g~~i~~~~~g~l~~  396 (445)
                      ++-..+++.. ++.+.....     .+.|+..+..+.....++.+.+|++.|++++++++... .+|..+|..++|+++|
T Consensus       284 ~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~  363 (400)
T PF03825_consen  284 AVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYD  363 (400)
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            9999998887 444433322     34789999999999999999999999999999988875 7999999999999999


Q ss_pred             hhhcCCCCcccchhHHHHHHHHHHHHHHHHHhcc
Q 013312          397 LFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMS  430 (445)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (445)
                      +. +.+..+.+... +.+.+++.++..+......
T Consensus       364 ~~-g~~~~~~~~~~-~~v~a~~~~~~~~~f~~~f  395 (400)
T PF03825_consen  364 AF-GARGMFDWSAV-FLVFAVMALVILVLFVILF  395 (400)
T ss_pred             Hh-cchhhhhHHHH-HHHHHHHHHHHHHHHHhhc
Confidence            97 33333222232 4444444444444444333

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.96  E-value=4.1e-25  Score=207.19  Aligned_cols=393  Identities=13%  Similarity=0.095  Sum_probs=278.0

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhcccccc----ccCchhHhH
Q 013312           10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSD----QYGRKAMLT   85 (445)
Q Consensus        10 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~D----r~Grr~~l~   85 (445)
                      +..+....+-..+++....+.++.|.++        .+.+....+++..+..+...+.+|+.|+++|    |+||||+++
T Consensus         6 li~~~~~~~Giq~~~~l~~~~l~~yl~~--------lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~i   77 (477)
T TIGR01301         6 LLRVASVAAGVQFGWALQLSLLTPYVQE--------LGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFI   77 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------cCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHH
Confidence            3344444555677888888999988754        3566688999999999999999999999999    599999988


Q ss_pred             HH-HHHHHHHHHHHHhhcCcch--------------hHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccch--hhHHHH
Q 013312           86 LP-LTLSIIPLAILAYRRSISF--------------FYAYYALRTLTAMVCEGSINCLALAYVADNISERQR--ASAFGI  148 (445)
Q Consensus        86 ~~-~~~~~~~~~~~~~~~~~~~--------------~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r--~~~~~~  148 (445)
                      .. ....+++..+.+++++...              .+..+++-.+..+ +.....+...++++|.+|+++|  +.++++
T Consensus        78 l~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~-~~n~~~~p~rALiaDl~p~~~~~~~~a~~~  156 (477)
T TIGR01301        78 AAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDV-ANNMLQGPCRAFLADLTGGDARRTRIANAY  156 (477)
T ss_pred             HHHHHHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHH-HHHHHHHHHHHhcccccCchhHHHHHHHHH
Confidence            74 6667777777777765210              0223333334445 5566777889999999998865  579999


Q ss_pred             HHHHHhhhhhhhhhhhhhh-------------------chhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCccccch
Q 013312          149 LLGVLSASFVCGTLAARFL-------------------STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIIT  209 (445)
Q Consensus       149 ~~~~~~~g~~~g~~l~~~~-------------------~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~  209 (445)
                      .+...++|.++|+.+++..                   +.|..|++.+++.++..++..+..||.+...+++.+.+    
T Consensus       157 ~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~----  232 (477)
T TIGR01301       157 FSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINS----  232 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhh----
Confidence            9999999999999888753                   34778999998888888888888999764322210000    


Q ss_pred             hhhcccccCCCCCCcccccccccchhHHHHHHhhc-chhhHHHHHHHHHHHhhhhhhHHHHHHHHH-hhcCCchh-----
Q 013312          210 EETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRS-SVTLSQAAVVAFFSGLSEGGMQASFLYFLK-AQFHFNKN-----  282 (445)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~-----  282 (445)
                                +.++  +++.+..+.+++.++.+++ +|.++.++++.++.++++..+..+.+.|.. +.++-++.     
T Consensus       233 ----------~~~~--~~~~~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y  300 (477)
T TIGR01301       233 ----------EAAP--PSKHGEEAFFGELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKY  300 (477)
T ss_pred             ----------hccc--ccccchhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHH
Confidence                      0000  0000111234555555443 567888999999999999999888888875 45554332     


Q ss_pred             -h----HHHHHHHHHHHHHHHHHHHHHHhhhhhcc-hhHHHHHHHHHHHHHHHHHhcCC---------------------
Q 013312          283 -Q----FADLMLIAGLAGTISQLLFMPLLAPILGE-AKLLSLGLFAACINMFICSISWS---------------------  335 (445)
Q Consensus       283 -~----~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---------------------  335 (445)
                       +    ..+......+...+.+ ++.+++.+|+|+ |+....+.++.++++....+.++                     
T Consensus       301 ~~gvr~G~~~l~~~s~~~~i~s-~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  379 (477)
T TIGR01301       301 DDGVRAGAFGLMLNSVVLGITS-IGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGI  379 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhh
Confidence             1    1233344555555666 566899999985 66668887788777776654331                     


Q ss_pred             chhHH-HHHHHHhhhhhhhhhHHHHHhcccCC--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccchhHH
Q 013312          336 AWVPY-ATTAFSVLVVFATPSFRSIVSKQVGP--NEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSI  412 (445)
Q Consensus       336 ~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~  412 (445)
                      .+..+ ...+.|+.....+..-++++++..|+  +..|..+|+.|.+..+.+.+.....|.+.+..++.+      ...+
T Consensus       380 ~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~------~~~~  453 (477)
T TIGR01301       380 KASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGN------LPAF  453 (477)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCC------eeHH
Confidence            13222 34677888999999999999999995  456999999999999999999999999666653322      1246


Q ss_pred             HHHHHHHHHHHHHHHhccCCCC
Q 013312          413 MCIGLASMVAFIQSLMMSHTPA  434 (445)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~  434 (445)
                      .+.++..+++.+..+++.|+++
T Consensus       454 ~~~gv~~~~aa~~~~~~~~~~~  475 (477)
T TIGR01301       454 VVGAVAAFVSGLLALILLPRPR  475 (477)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCC
Confidence            7788888888888877766654

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.96  E-value=4.3e-27  Score=220.85  Aligned_cols=330  Identities=15%  Similarity=0.047  Sum_probs=246.2

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHhhhccch
Q 013312           44 DECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEG  123 (445)
Q Consensus        44 ~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g  123 (445)
                      +|.+....+.+.+.+++.++++++.++.|.+.||++-.+.+..+.+.+++-.++.....|   ++.+++.|++.|+ ..+
T Consensus        74 edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s---~~~~ialr~llGl-~es  149 (495)
T KOG2533|consen   74 EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHS---FPGLIALRFLLGL-FES  149 (495)
T ss_pred             cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHH-Hhc
Confidence            555677788999999999999999999999999999999999988888888888888888   9999999999999 899


Q ss_pred             hHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhhhh----------hchhhHHHHHHHHHHHHHHHHHHhccC
Q 013312          124 SINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF----------LSTTSAFQAATIVSMLAAAYMRVFLKD  193 (445)
Q Consensus       124 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~----------~~w~~~f~~~~~~~~i~~~~~~~~~~e  193 (445)
                      ..+|....+++.|+.++||+..++++.+..++|.++|++++..          .||||.|++.+++.++..++..+.+|+
T Consensus       150 ~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~  229 (495)
T KOG2533|consen  150 GGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPD  229 (495)
T ss_pred             ccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecC
Confidence            9999999999999999999999999999999999999888755          389999999999999999999899999


Q ss_pred             CCCCCCCcCCccccchhhh-cccccCCCCCCcccccccccchhHHHHHHhhcchhhHHHHHHHHHHHhhhhhhHHHHHHH
Q 013312          194 DVPNDDDDDLTRPIITEET-EGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYF  272 (445)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (445)
                      .|.+..-.++.++.....+ ++.+.++.    .++     .+.++ ++...+++.+|...+..++.....+++.+++|.|
T Consensus       230 ~P~~~~fl~~~ek~~~~~~~~~~~~~~~----~~~-----~~~~~-~~~a~~dp~vw~~~l~~~~~~lv~~~~~~~lpl~  299 (495)
T KOG2533|consen  230 NPSKAWFLTDEEKELVVERLRESPSGGI----ENK-----FKWKG-FKEALKDPGVWPFSLCYFFLKLVNYGFSYWLPLY  299 (495)
T ss_pred             ChhhccccchHHHHHHHHHHHhccCCCc----ccc-----cCHHH-HHHHHhchhHHHHHHHHHHHhhccccHHHHHHHH
Confidence            8875432222111111000 00000000    000     12233 3335578889999999999999999999999999


Q ss_pred             HHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhh----hcchhHHHHHHHHHH-HHHHHHHhcCCchhHHHH-HHHH
Q 013312          273 LKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPI----LGEAKLLSLGLFAAC-INMFICSISWSAWVPYAT-TAFS  346 (445)
Q Consensus       273 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~g  346 (445)
                      +++..|+|..+...+.....++++++. ++.+.++||    ..+|........+.. ++...+............ ....
T Consensus       300 l~~~~~~s~~~a~~ls~~~~~~g~v~~-i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~  378 (495)
T KOG2533|consen  300 LKSNGGYSELQANLLSTPYDVGGIVGL-ILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLLAAAVLPGAYGAFLIGP  378 (495)
T ss_pred             HHcCCCcChHHhccccchHHhhhHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHhHHHHhcc
Confidence            999667999999999999999999988 888999999    455555554444443 333444444434433333 3334


Q ss_pred             hhhhhhhhhHHHHHhcccCCccch-hHHHHHHHHHHHHHHHHH
Q 013312          347 VLVVFATPSFRSIVSKQVGPNEQG-KAQGCISGISSFANIVSP  388 (445)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~g-~~~g~~~~~~~~g~~i~~  388 (445)
                      .+.....+......++....+.|. +..+......+.++.++|
T Consensus       379 ~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~  421 (495)
T KOG2533|consen  379 YGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISG  421 (495)
T ss_pred             hhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhh
Confidence            556667777788887777555443 333333334444444443

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.96  E-value=3.6e-28  Score=215.95  Aligned_cols=414  Identities=13%  Similarity=0.090  Sum_probs=286.0

Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHHHHHH
Q 013312           12 HLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLS   91 (445)
Q Consensus        12 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~   91 (445)
                      +.-.+.|.+..+.+.+.++.|.+.+...+...+.-+.+....+.+..+..+|..++++++|++.||+|||+++...+++.
T Consensus        45 iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liIm  124 (538)
T KOG0252|consen   45 IAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIM  124 (538)
T ss_pred             HhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHH
Confidence            33455677888888888888877765443333334566677889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCcc----hhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhhhhh
Q 013312           92 IIPLAILAYRRSIS----FFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL  167 (445)
Q Consensus        92 ~~~~~~~~~~~~~~----~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~  167 (445)
                      .+++++++++...+    ...++...|++.|+ |.|.-+|...+..+|...+++||...+.+-+.++.|.+.|.+++-.+
T Consensus       125 Ii~t~~~~~s~~~~~~~~~m~~L~~~R~~LGi-GIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv  203 (538)
T KOG0252|consen  125 IICSALSGLSVGTTSPLGVMMTLCFFRFLLGI-GIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIV  203 (538)
T ss_pred             HHHHHHhccCCCCCCCcchhhHHHHHHHHhhc-cccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHH
Confidence            99999888764332    37899999999999 99999999999999999999999999999988888888876655331


Q ss_pred             -------------------chhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCc-CCccccchhhhcccccCCCC-CCccc
Q 013312          168 -------------------STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDD-DLTRPIITEETEGVNQNESN-SPVKI  226 (445)
Q Consensus       168 -------------------~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~  226 (445)
                                         -||..|.+.++++++. ++....+||+++.+... +|.+++.+..++..+.+-+. +...+
T Consensus       204 ~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~-ly~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~~~~~~~~~~~~~  282 (538)
T KOG0252|consen  204 SAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLV-LYFRLKMPETARYTALVSKKLKQAAGDMKKVLSVDIEAESTAES  282 (538)
T ss_pred             HHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHH-HHhhhcCCcchhHHHHhhcCHhhhhhccccccccccchhhcccc
Confidence                               4899999988886554 55567889987744111 11111111000000000000 00011


Q ss_pred             ccccccchhHHHHHHhhc--chhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHH--------HHHHHHHHHH
Q 013312          227 PVCKKIPSIRDLICLLRS--SVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFAD--------LMLIAGLAGT  296 (445)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~--------~~~~~~~~~~  296 (445)
                      .....++..+...+.+.+  -+.+.......|+...+++....+....++. .|+.+....+        ...+....+.
T Consensus       283 ~~~~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~-ig~~~~~~~~~~~~~vA~~~~iia~~~~  361 (538)
T KOG0252|consen  283 DVPPPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSA-IGVIPSANTYHELFKVAEGNLIIAVCST  361 (538)
T ss_pred             CCCCcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccHHHHHHHh-hccCCCcchHHHHHHHHHHHHHHHHHcc
Confidence            111111122222222322  2566777778888888888888888888875 5665544332        2222223333


Q ss_pred             HHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHhcCCch----hHH-H-HHHHHhhhhhhhhhHHHHHhcccCCccch
Q 013312          297 ISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAW----VPY-A-TTAFSVLVVFATPSFRSIVSKQVGPNEQG  370 (445)
Q Consensus       297 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~g  370 (445)
                      +....+...++|++||++..+.++.++.+..+.++...+..    ... + .+...++.-........+.+|.+|.+.||
T Consensus       362 vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~  441 (538)
T KOG0252|consen  362 VPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRS  441 (538)
T ss_pred             CCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhh
Confidence            32224555679999999999999999999999888766521    111 1 22233444445566666789999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccchhHHHHHHHHHHHHHHHHHhccC
Q 013312          371 KAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMSH  431 (445)
Q Consensus       371 ~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (445)
                      +..|+....+..|++++...+.++.++-  +.. .......+++.+.+.+++.+..+.+++
T Consensus       442 t~hGIsAA~GK~GAivg~~~F~~~t~~~--yp~-~~g~~~v~~i~~~~~~~gi~~T~l~pE  499 (538)
T KOG0252|consen  442 TCHGISAASGKAGAIVGAFGFLYLTDHN--YPP-NIGVRNVFIILAGCMLLGILFTLLIPE  499 (538)
T ss_pred             hhhhHHHHhccchHHHHHHHhhHhhhcc--CCc-cccchHHHHHHHHHHHHhHheeEEeec
Confidence            9999999999999999999999988852  111 123344678888888888888888874

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.95  E-value=4.6e-26  Score=221.04  Aligned_cols=394  Identities=16%  Similarity=0.128  Sum_probs=262.3

Q ss_pred             HhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHHHHHHHHHHHHHHhhcCc
Q 013312           25 MMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSI  104 (445)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~  104 (445)
                      +...+..+.+.++.. ....+.+....+.+++.+...++..+++++.|+++|++|||+.++.+.+.+.++.+++++++| 
T Consensus        64 g~~s~~~~~~~~~~~-~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~-  141 (513)
T KOG0254|consen   64 GGISGALDFLQRFAS-LYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPS-  141 (513)
T ss_pred             ccchhhHHHHHhccc-ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhh-
Confidence            455566666655321 111111111146699999999999999999999999999999999999999999999999999 


Q ss_pred             chhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhhhhh-----chhhHHHHHHHH
Q 013312          105 SFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL-----STTSAFQAATIV  179 (445)
Q Consensus       105 ~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~-----~w~~~f~~~~~~  179 (445)
                        +++++++|+++|+ |.|........+++|..|++.|+...+..+....+|..++..++...     +||..+.+..+.
T Consensus       142 --~~~l~~GR~l~G~-g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~  218 (513)
T KOG0254|consen  142 --WYQLIVGRILTGL-GVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIP  218 (513)
T ss_pred             --HHHHHHHHHHhcc-chhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHH
Confidence              9999999999999 88888899999999999999999999999999999999997777665     699999999988


Q ss_pred             HHHHHHHHHHhccCCCCCCCCcCC---ccccchhhhcccccCC--CCCCcc-----cccccccc-hhHHHHHHhhcchhh
Q 013312          180 SMLAAAYMRVFLKDDVPNDDDDDL---TRPIITEETEGVNQNE--SNSPVK-----IPVCKKIP-SIRDLICLLRSSVTL  248 (445)
Q Consensus       180 ~~i~~~~~~~~~~e~~~~~~~~~~---~~~~~~~~~~~~~~~~--~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~~  248 (445)
                      +++..+. .+++||+|+...++.+   .++.+.......+.+.  +.+...     +......+ .+++..+...+++..
T Consensus       219 ~~~~~~~-~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  297 (513)
T KOG0254|consen  219 AVILALG-MLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGELFSPKVRKRLI  297 (513)
T ss_pred             HHHHHHH-HHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHHhcCcchHHHHH
Confidence            8777766 7889999985443322   2223332222110000  000000     00000111 122322211222333


Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHH
Q 013312          249 SQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMF  328 (445)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  328 (445)
                      ....+..+....+......+.+.+++. .|.+... .......++...++. .+...+.||+|||++++.+...+.++.+
T Consensus       298 i~~~l~~fqq~tG~~~~~~Y~~~if~~-~g~~~~~-~~~~~~~~~v~~~~t-~~~~~lvd~~gRr~lll~s~~~m~~~~~  374 (513)
T KOG0254|consen  298 IGLLLQLFQQLTGINYVFYYSTTIFKS-AGLKSDT-FLASIILGVVNFLGT-LVATYLVDRFGRRKLLLFGAAGMSICLV  374 (513)
T ss_pred             HHHHHHHHHHHhCCceEEeehHHHHHh-cCCCCch-HHHHHHHHHHHHHHH-HHHHHHHHHhccHHHHHHhHHHHHHHHH
Confidence            334444444444555566777777766 5666443 444455566666666 5557999999999999999999999888


Q ss_pred             HHHhcC----C--------chhHHH-H-HHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 013312          329 ICSISW----S--------AWVPYA-T-TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPL  394 (445)
Q Consensus       329 ~~~~~~----~--------~~~~~~-~-~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l  394 (445)
                      +++...    .        .+..+. . ...........|..+.+.+|.+|.+.|+++.++....+.+.+.+-......+
T Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~  454 (513)
T KOG0254|consen  375 ILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFI  454 (513)
T ss_pred             HHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            776531    1        122222 2 2223344445677778899999999999999999999998877776665555


Q ss_pred             HHhhhcCCCCcccchhHHHHHHHHHHHHHH-HHHhccCCCCC
Q 013312          395 TALFLSKGAPFNFPGFSIMCIGLASMVAFI-QSLMMSHTPAS  435 (445)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  435 (445)
                      .+..       .... .+...+..+.+... ..+...+|++.
T Consensus       455 ~~~~-------~~~~-~f~~f~~~~~~~~~~fv~~~~pETkg  488 (513)
T KOG0254|consen  455 TEAL-------GIGG-TFGYFGGICLLSLIIFVFFFVPETKG  488 (513)
T ss_pred             HHhc-------cccc-hHHHHHHHHHHHHHHHheEEcccCCC
Confidence            5543       1111 23333334444444 55555555543

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.95  E-value=1.1e-24  Score=188.86  Aligned_cols=326  Identities=15%  Similarity=0.143  Sum_probs=264.3

Q ss_pred             HhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHHHHHHHHHHHHHHhhcCc
Q 013312           25 MMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSI  104 (445)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~  104 (445)
                      ..+.|.++.+.        +++++|....|++.++..+...+.+++..+++.|+|.++.+..++++.+++.++-... + 
T Consensus        29 tsvgPLL~~Ir--------~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~-   98 (395)
T COG2807          29 TSVGPLLDEIR--------QDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-G-   98 (395)
T ss_pred             hhhhhhHHHHH--------HHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-c-
Confidence            34455555553        6678999999999999999999999999999999999999999999999999998888 5 


Q ss_pred             chhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhh----hhhh-chhhHHHHHHHH
Q 013312          105 SFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLA----ARFL-STTSAFQAATIV  179 (445)
Q Consensus       105 ~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l----~~~~-~w~~~f~~~~~~  179 (445)
                        .+.++.+-.+.|. +.+..+...++.+.+.+| |+-+..+++++...++|..+++.+    .... +||....+-+.+
T Consensus        99 --~~~L~~gt~l~G~-gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~  174 (395)
T COG2807          99 --LPLLFLGTLLAGA-GIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALL  174 (395)
T ss_pred             --HHHHHHHHHHHHh-hHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHH
Confidence              6889999999999 999999999999999998 677899999999998887776544    4444 799999888888


Q ss_pred             HHHHHHHHHHhccCCCCCCCCcCCccccchhhhcccccCCCCCCcccccccccchhHHHHHHhhcchhhHHHHHHHHHHH
Q 013312          180 SMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSG  259 (445)
Q Consensus       180 ~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (445)
                      +++.++.   ++|...+++..+                          ...+.++..+    ++++|.-|.+.+...+.+
T Consensus       175 allAl~~---WlPq~~r~~~~~--------------------------~~~~~~~~~~----vw~~~~aW~vtLfmGlqS  221 (395)
T COG2807         175 ALLALLI---WLPQALREQAAS--------------------------IATKLVSVRK----VWRSPLAWQVTLFMGLQS  221 (395)
T ss_pred             HHHHHHH---Hhhhcccccccc--------------------------cccccccccc----cccCchhHHHHHHHHhhH
Confidence            7766543   345432221110                          0000011112    567788899999999999


Q ss_pred             hhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhc-chhHHHHHHHHHHHHHHHHHhcCCchh
Q 013312          260 LSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILG-EAKLLSLGLFAACINMFICSISWSAWV  338 (445)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (445)
                      +.++....|+|.++.| .|+|+++.|.+.+...+..+..+ +..+.+.+|.+ +|+.......++.++.+.+.+.+....
T Consensus       222 ~~~Y~~~~WLP~ili~-~G~sa~~aG~llsl~~l~~~~~~-ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~  299 (395)
T COG2807         222 LLYYIVIGWLPAILID-RGLSAAEAGSLLSLMQLAQLPTA-LLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLP  299 (395)
T ss_pred             HHHHHHHHHHHHHHHH-cCCCHHHhhhHHHHHHHHHHHHH-HHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHH
Confidence            9999999999999999 59999999999999999999998 88899998654 566777777788888887777665444


Q ss_pred             HHHHHHHHhhhhhhhhhHHHHHhcccC-CccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013312          339 PYATTAFSVLVVFATPSFRSIVSKQVG-PNEQGKAQGCISGISSFANIVSPLIFSPLTALFL  399 (445)
Q Consensus       339 ~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~  399 (445)
                      ....+++|++.+..+|.....+.+..+ +++.++-.|+.+..+++-...||.++|++.|..+
T Consensus       300 ~lw~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~g  361 (395)
T COG2807         300 ILWALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATG  361 (395)
T ss_pred             HHHHHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcC
Confidence            444688899999999999998876664 4666888999999999999999999999999984

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.95  E-value=9.7e-26  Score=214.08  Aligned_cols=360  Identities=16%  Similarity=0.140  Sum_probs=270.7

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHHHHHHHHHHHHHHhhcCcchhHHHHHH-HHHhhhccc
Q 013312           44 DECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYAL-RTLTAMVCE  122 (445)
Q Consensus        44 ~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-r~l~G~~~~  122 (445)
                      ++++.+..+++|+.++......+..|+.+.+.||+|.|++.+.+.++.+++.++.+++++   +|.+++. -++.|+ |.
T Consensus        74 ~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~---i~~l~lt~gvi~G~-G~  149 (509)
T KOG2504|consen   74 DYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATS---LWQLYLTFGVIGGL-GL  149 (509)
T ss_pred             HHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHhhc-cc
Confidence            334555566899999999999999999999999999999999999999999999999999   7666554 567788 88


Q ss_pred             hhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhhhh----hchhhHHHHHHHHHHHHHHHHHHhccCCCCCC
Q 013312          123 GSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPND  198 (445)
Q Consensus       123 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~----~~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~  198 (445)
                      +..+......+..+++ ++|+.+.|+...+.++|..+=|.+...    .|||+.+++.+.+.+-..+.....-|.+++.+
T Consensus       150 ~~~~~paiviv~~YF~-kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~  228 (509)
T KOG2504|consen  150 GLIYLPAVVILGTYFE-KKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKK  228 (509)
T ss_pred             hhhhcchhhhhhhHhH-HHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCC
Confidence            8888888888887766 899999999999999998887777665    49999999988887666555555555333322


Q ss_pred             CC-cCCccccc---hh-------hh---cccccC---CCCCCccccccccc-chhHHHH----HHhhcchhhHHHHHHHH
Q 013312          199 DD-DDLTRPII---TE-------ET---EGVNQN---ESNSPVKIPVCKKI-PSIRDLI----CLLRSSVTLSQAAVVAF  256 (445)
Q Consensus       199 ~~-~~~~~~~~---~~-------~~---~~~~~~---~~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~  256 (445)
                      +. .++.+...   +.       ..   +....+   .+.....+.+.+.. .+.+...    ..+++++.++...+...
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~  308 (509)
T KOG2504|consen  229 PNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNL  308 (509)
T ss_pred             chhhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHHcCchHHHHHHHHH
Confidence            21 00000000   00       00   000000   00000000000000 0111111    23567788888888888


Q ss_pred             HHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhc--chhHHHHHHHHHHHHHHHHHhcC
Q 013312          257 FSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILG--EAKLLSLGLFAACINMFICSISW  334 (445)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  334 (445)
                      +...++.....++|.|.++ .|++..+.+.+++..++..+++. ++.|++.|+..  ++.+..++.+..+++.+...+.+
T Consensus       309 ~~~~g~~~p~~~l~~~~~~-~g~~~~~aa~l~Siigi~~i~gR-i~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~  386 (509)
T KOG2504|consen  309 FAYLGFNVPFVYLPSYAKS-LGLSSNDAAFLLSIIGVSDIIGR-IILGLLADKPGIRALVLFLLTLLIAGLARLFLPFAT  386 (509)
T ss_pred             HHHHHHHHHHHHHHHHHhh-cCCChhhhHHHHHHHHHhhhhhh-hhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhc
Confidence            8888999999999999996 79999999999999999999999 88899999877  45566777777777777888888


Q ss_pred             CchhHHH-HHHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccchh
Q 013312          335 SAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGF  410 (445)
Q Consensus       335 ~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~  410 (445)
                      +.+.+.. +.++|+..+.........+.|.++.++-..+.|+...++.++..+||++.|++.|..++++..+...+.
T Consensus       387 ~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~  463 (509)
T KOG2504|consen  387 TYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGL  463 (509)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcCh
Confidence            8876666 477888888888888889999999999999999999999999999999999999998666665544444

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.95  E-value=1.3e-24  Score=197.56  Aligned_cols=387  Identities=15%  Similarity=0.110  Sum_probs=262.9

Q ss_pred             hHhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhH
Q 013312            6 EIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLT   85 (445)
Q Consensus         6 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~   85 (445)
                      +++..+.+....++..+.++...|..|.++++       ..+++..++|.+.++..+...+.+|+.|.++||.|.||-++
T Consensus         5 ~~~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~-------~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll   77 (412)
T PF01306_consen    5 KNKNYWWLSLFYFFYFFIWGIFLPFFPIWLTQ-------VAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLL   77 (412)
T ss_dssp             HSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHH
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHHHHHHHHcc-------ccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHH
Confidence            35677788888888999999999999999974       24888899999999999999999999999999999777655


Q ss_pred             HHHHHH---HHHHHHHHhhcC--cchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhh
Q 013312           86 LPLTLS---IIPLAILAYRRS--ISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCG  160 (445)
Q Consensus        86 ~~~~~~---~~~~~~~~~~~~--~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g  160 (445)
                      ....+.   ........+.|-  .+.+...+++-+..|+ .-....|...+++.+..  ++.+.-.|-..+..++|.+++
T Consensus        78 ~~i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~-~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~  154 (412)
T PF01306_consen   78 WFIAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGL-VFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIA  154 (412)
T ss_dssp             HHHHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTT-TTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHH
Confidence            443222   122222233221  0102334444455565 44555677788777665  344556777888888899888


Q ss_pred             hhhhhhh---chhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCccccchhhhcccccCCCCCCcccccccccchhHH
Q 013312          161 TLAARFL---STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRD  237 (445)
Q Consensus       161 ~~l~~~~---~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (445)
                      ..++|.+   +-+..|++....+++..++..+.-|+.+++.+.. |                     .+..++++.+.++
T Consensus       155 s~~~G~L~~i~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~-~---------------------~~~~~~~~~~~~~  212 (412)
T PF01306_consen  155 SLLAGILFNINPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVA-D---------------------ALGAKKDKVSLKD  212 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SS-T---------------------TSSS------HHH
T ss_pred             HHHhheeeeeCccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhh-c---------------------ccccCCCCCcHHH
Confidence            8888874   4567788777665555444433333333222111 0                     0011112223455


Q ss_pred             HHHHhhcchhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhc---CCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchh
Q 013312          238 LICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQF---HFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAK  314 (445)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  314 (445)
                      ..+ ++|+|++|.+.+........+..+...+|.|.+..+   +.+....|++.+..-+..++.. ...+++.+|+|.|+
T Consensus       213 ~~~-l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m-~~~p~li~rig~k~  290 (412)
T PF01306_consen  213 VLS-LFKMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMM-FFSPWLINRIGAKN  290 (412)
T ss_dssp             HHH-HTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-HHH
T ss_pred             HHH-HhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHH-HHHHHHHHhcChHh
Confidence            343 557788887777666666666777777888887633   3344567888888877777766 88899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCchhHHHH-HHHHhhhhhhhhhHHHHHhcccCCccchhHHHHH-HHHHHHHHHHHHHHHH
Q 013312          315 LLSLGLFAACINMFICSISWSAWVPYAT-TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCI-SGISSFANIVSPLIFS  392 (445)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~-~~~~~~g~~i~~~~~g  392 (445)
                      .++++..++.+-....++.++++.+... .+.++-.........-++++.+|++..++...+. +...+++..+.+.+.|
T Consensus       291 ~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G  370 (412)
T PF01306_consen  291 LLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAG  370 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence            9999999999999999999999887776 8889999999999999999999999999999885 6777999999999999


Q ss_pred             HHHHhhhcCCCCcccchhHHHHHHHHHHHHHHHHH-hccCCCC
Q 013312          393 PLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSL-MMSHTPA  434 (445)
Q Consensus       393 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  434 (445)
                      .++|+.       ++... +.+.+.+.+...+... .++++++
T Consensus       371 ~lyd~~-------G~~~t-ylimg~iv~~~~li~~f~l~~~~~  405 (412)
T PF01306_consen  371 YLYDRI-------GFQHT-YLIMGLIVLPFTLISAFTLKKDKK  405 (412)
T ss_dssp             HHHHHH-------HHHHH-HHHHHHHHHHHHHHHHHHS--SSS
T ss_pred             hhHhhc-------CcHHH-HHHHHHHHHHHHHHheeeecCCCc
Confidence            999998       44444 4455555555444444 4444433

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.95  E-value=5.5e-24  Score=201.06  Aligned_cols=354  Identities=14%  Similarity=0.140  Sum_probs=265.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhccccccccCchhHhH-HHHHHHHHHHHHHHhhcCcchhHHHHHHHHHhhhccchhHHHH
Q 013312           50 IYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLT-LPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCL  128 (445)
Q Consensus        50 ~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~  128 (445)
                      ....++..++..+..++..|+.|.++|+-|+||.++ ....+..+.+..+.+.+. +.++...+.-++.-+ +.+.....
T Consensus        69 ~s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~-~~~~~~~~l~iia~v-~~~~~~vf  146 (477)
T PF11700_consen   69 SSLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSP-GQWWLALVLFIIANV-GYEASNVF  146 (477)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCc-chHHHHHHHHHHHHH-HHHHHHHH
Confidence            345678899999999999999999999998876655 455666667777777532 224444444444444 66666778


Q ss_pred             HHHHHhcCCCccch--------------------------hhHHHHHHHHHhhhhhhhhhhhhh------------hchh
Q 013312          129 ALAYVADNISERQR--------------------------ASAFGILLGVLSASFVCGTLAARF------------LSTT  170 (445)
Q Consensus       129 ~~~~i~~~~~~~~r--------------------------~~~~~~~~~~~~~g~~~g~~l~~~------------~~w~  170 (445)
                      .++++.|..+++++                          ++..+.-.....+|.++.-.+.-.            .+-|
T Consensus       147 yna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r  226 (477)
T PF11700_consen  147 YNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIR  226 (477)
T ss_pred             HHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhh
Confidence            99999999999888                          888887777777777665443322            1248


Q ss_pred             hHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCccccchhhhcccccCCCCCCcccccccccchhHHHHHHhhcchhhHH
Q 013312          171 SAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQ  250 (445)
Q Consensus       171 ~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (445)
                      ..+.+.++..++..+...+.+||.|++++.+..                     ........+.+++.++..+|.|.+..
T Consensus       227 ~~~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~---------------------~~~~~~g~~~l~~t~k~~~~~~~~~~  285 (477)
T PF11700_consen  227 VAFLIVALWWLVFSIPLFLWLPDRPGPRPLPSG---------------------SSYLRFGFKRLWRTFKEIRKLRQLFL  285 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcc---------------------hhHHHHHHHHHHHHHHHHHhChHHHH
Confidence            888888888888888888888987763222100                     00001111233444556778888888


Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcch--hHHHHHHHHHHHHHH
Q 013312          251 AAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEA--KLLSLGLFAACINMF  328 (445)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~  328 (445)
                      .++..+++.-+..++..+...|.++.+|++..+...+.....+.++++. ++.+++.||+|.|  +++..+.....+..+
T Consensus       286 fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga-~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~  364 (477)
T PF11700_consen  286 FLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGA-LLFGWLQDRFGPKTKRTLLISLILWIIIPL  364 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999 7889999999998  777777666544333


Q ss_pred             HHHh--------cCCchhHHH-HHHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013312          329 ICSI--------SWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFL  399 (445)
Q Consensus       329 ~~~~--------~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~  399 (445)
                      .-.+        ..+.|.++. ..+.|+..+..++...++.++..|+++.++.+|++...+.....+||.+.|.+.+.++
T Consensus       365 ~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg  444 (477)
T PF11700_consen  365 YGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATG  444 (477)
T ss_pred             HHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            3333        345566665 4788999999999999999999999999999999999999999999999999999984


Q ss_pred             cCCCCcccchhHHHHHHHHHHHHHHHHHhccCCCC
Q 013312          400 SKGAPFNFPGFSIMCIGLASMVAFIQSLMMSHTPA  434 (445)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (445)
                      +.+.       .+....++.++++++....+.++.
T Consensus       445 ~~r~-------g~~~l~~lf~~gl~ll~~v~~~~g  472 (477)
T PF11700_consen  445 SQRY-------GFLFLLVLFLIGLILLFFVDVEKG  472 (477)
T ss_pred             Cchh-------HHHHHHHHHHHHHHHHhhccchhh
Confidence            3332       345556666777777766665544

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.95  E-value=9.8e-32  Score=258.21  Aligned_cols=406  Identities=17%  Similarity=0.185  Sum_probs=265.1

Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHH---hcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHHHHHH
Q 013312           15 VTVFLWGFATMMVVPAITDVTMM---ALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLS   91 (445)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~   91 (445)
                      ++.+...++...+.+..+.....   ......++.+.+..+.++..+...++..+++++.|.++||+|||+.+..+.++.
T Consensus         7 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~   86 (451)
T PF00083_consen    7 LGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLM   86 (451)
T ss_pred             HHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhccccccccccccccccccccccccccc
Confidence            34466777776666655555422   111122222335567899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhc---CcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhhhh--
Q 013312           92 IIPLAILAYRR---SISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF--  166 (445)
Q Consensus        92 ~~~~~~~~~~~---~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~--  166 (445)
                      .++.++.++++   +   ++.+.++|++.|+ +.|...+....++.|..|+++|++..++.+....+|..++..++..  
T Consensus        87 ~i~~~~~~~~~~~~~---~~~~~~~R~~~G~-~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~  162 (451)
T PF00083_consen   87 IIGSILIAFAPSYNN---FWMLLIGRFLIGF-GIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVS  162 (451)
T ss_pred             ccccccccccccccc---ccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999   7   9999999999999 8898889999999999999999999999999999998888766543  


Q ss_pred             --hc---hhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCc---CCccccchhhhcccccCCCCCCcccccc---cccchh
Q 013312          167 --LS---TTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDD---DLTRPIITEETEGVNQNESNSPVKIPVC---KKIPSI  235 (445)
Q Consensus       167 --~~---w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~  235 (445)
                        .+   ||..+.+.++++++..+ ...++||+|+....+   +++++..++.++.+..+++.++..++.+   +.+..+
T Consensus       163 ~~~~~~~Wr~~~~~~~~~~l~~~~-~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (451)
T PF00083_consen  163 YYSDNWGWRILLIFGAIPSLLVLL-LRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASW  241 (451)
T ss_pred             cccccccccccccccccccccccc-cccccccccceecccccccccccccccccccccccccccccccccccccccceee
Confidence              24   99999999888766544 447899999854333   3444444442222111111111111111   111223


Q ss_pred             HHHHHHhhcchhhHHHHHHHHHHHhhh-hhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchh
Q 013312          236 RDLICLLRSSVTLSQAAVVAFFSGLSE-GGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAK  314 (445)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  314 (445)
                      ++.++....++++...+.......... .....+.+...++ .+.+..  -......++...++. +...++.||+|||+
T Consensus       242 ~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~-~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~GRr~  317 (451)
T PF00083_consen  242 RDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFEN-AGISNS--FLATLILGLVNFLGT-LLAIFLIDRFGRRK  317 (451)
T ss_pred             eeccccccccccccccccccccccccccccccccccccccc-cccccc--ccccccccccccccc-cccccccccccccc
Confidence            332221111122222222232232222 2333444545544 566666  112223334444444 55568999999999


Q ss_pred             HHHHHHHHHHHHHHHHH--h---cCC----chhHHH-HHHHHhhhh-hhhhhHHHHHhcccCCccchhHHHHHHHHHHHH
Q 013312          315 LLSLGLFAACINMFICS--I---SWS----AWVPYA-TTAFSVLVV-FATPSFRSIVSKQVGPNEQGKAQGCISGISSFA  383 (445)
Q Consensus       315 ~~~~~~~~~~~~~~~~~--~---~~~----~~~~~~-~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g  383 (445)
                      ++..+.....++.+.+.  .   .++    ....+. ..+.....+ ...+....+..|.+|++.|+++.|+....+.++
T Consensus       318 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~  397 (451)
T PF00083_consen  318 LLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIG  397 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccceeeeecccccccccccccccccccccccccccccccccccccccc
Confidence            99888888877776664  1   111    111112 222222222 456777788999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhcCCCCcccchhHHHHHHHHHHHHHHHHHhccCCCCCCC
Q 013312          384 NIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMSHTPASSK  437 (445)
Q Consensus       384 ~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (445)
                      +.++|.+...+.+...        ....+.+.+.++++..+..+...||++.+.
T Consensus       398 ~~i~~~~~~~~~~~~~--------~~~~~~i~~~~~~i~~i~~~~~lpET~g~~  443 (451)
T PF00083_consen  398 GFIIPFLFPYLFNNLG--------GWGVFLIFAGVCLIAIIFVYFFLPETKGKT  443 (451)
T ss_pred             cccccccccccccccc--------ccccchhhHHHHHHHHhheeEEEeeCCCCC
Confidence            9999999888877641        111245555555666666666666665443

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.95  E-value=2.8e-26  Score=225.56  Aligned_cols=366  Identities=14%  Similarity=0.190  Sum_probs=257.1

Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHHHHHHHHHH
Q 013312           16 TVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPL   95 (445)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~   95 (445)
                      ..+...+..+...+.++.+.        ++++++..+.|++.+.+.++++++.++.|++.||+|||+.+.++.++.+++.
T Consensus        41 ~~~~~~~~~g~~~~~l~~ie--------k~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~  112 (633)
T TIGR00805        41 AQLQGLLYNGLVNSSLTTIE--------RRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGS  112 (633)
T ss_pred             HHHHHHHHHHHHHhhchhhh--------hhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHH
Confidence            34444455566667777664        4567788889999999999999999999999999999999999999999999


Q ss_pred             HHHHhhc----------------------------C--------------------cchhHHHHHHHHHhhhccchhHHH
Q 013312           96 AILAYRR----------------------------S--------------------ISFFYAYYALRTLTAMVCEGSINC  127 (445)
Q Consensus        96 ~~~~~~~----------------------------~--------------------~~~~~~l~~~r~l~G~~~~g~~~~  127 (445)
                      +++++.+                            +                    ...+..++++|+++|+ +.+...+
T Consensus       113 ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~Gi-G~~~~~~  191 (633)
T TIGR00805       113 FLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGI-GATPIFP  191 (633)
T ss_pred             HHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhc-cCCcchh
Confidence            9988763                            0                    0025677899999999 8899999


Q ss_pred             HHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhhhhh--------------------------chhhHHHHHHHHHH
Q 013312          128 LALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL--------------------------STTSAFQAATIVSM  181 (445)
Q Consensus       128 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~--------------------------~w~~~f~~~~~~~~  181 (445)
                      ...+++.|++|+++|+++++++.....+|.++|+++++.+                          .|+..|++.+++.+
T Consensus       192 ~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~  271 (633)
T TIGR00805       192 LGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVAL  271 (633)
T ss_pred             cCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999888652                          16777888887776


Q ss_pred             HHHHHHHHhccCCCCCCCCcCCccccchhhhcccccCCCCCCcccccccccchhHHHHHHhhcchhhHHHHHHHHHHHhh
Q 013312          182 LAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLS  261 (445)
Q Consensus       182 i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (445)
                      +..+.. +.+|++.++..++.+.+.. +.  +..++.++..  ............+..+.+.++|.++...+..++....
T Consensus       272 l~~v~l-~~~p~~lp~~~~~~~~~~~-~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~  345 (633)
T TIGR00805       272 LTSIPF-FFFPKALPKEGKRVNVDVH-ET--EKLEKSEDKS--RKKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLA  345 (633)
T ss_pred             HHHHHH-HhCccccCCcccccchhhh-hh--hccccccccc--chhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence            665544 5566544322111000000 00  0000000000  0000001112223344577888898888888888899


Q ss_pred             hhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHH-HHHHHHHHHHHhhhhhc--chhHHHHHHHHHHHHHHHHHh------
Q 013312          262 EGGMQASFLYFLKAQFHFNKNQFADLMLIAGLA-GTISQLLFMPLLAPILG--EAKLLSLGLFAACINMFICSI------  332 (445)
Q Consensus       262 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~-~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~------  332 (445)
                      ..++..++|.|+++.+|+++.+++++.....+. .+++. +++|++.||++  .|+.+..+.++..++.+....      
T Consensus       346 ~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~-~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C  424 (633)
T TIGR00805       346 FNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGY-LIGGFIMKKFKLNVKKAAYFAICLSTLSYLLCSPLFLIGC  424 (633)
T ss_pred             HHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHH-hhhhheeeeecccHHHHHHHHHHHHHHHHHHHHHHHeecC
Confidence            999999999999999999999999998887764 45555 88899999988  456666666666665433110      


Q ss_pred             ---------------------c----------CC---c------------------------------------------
Q 013312          333 ---------------------S----------WS---A------------------------------------------  336 (445)
Q Consensus       333 ---------------------~----------~~---~------------------------------------------  336 (445)
                                           .          .+   +                                          
T Consensus       425 ~~~~~agv~~~y~~~~~~~~~~~~Cn~~C~C~~~~~~PVCg~~~~tY~SpC~AGC~~~~~~~~~~~y~~CsCi~~~~~~~  504 (633)
T TIGR00805       425 ESAPVAGVNNPSTDQSIYVENPTDCNRQCSCDSSFFDPVCGDNGLAYLSPCHAGCSMSVGTGSNMVYTNCSCVQTPGNSS  504 (633)
T ss_pred             CCCccceeeccCCCcccCCCChhccCCCCCCCCCCcccccCCCCCEEECccccCCCCccCCCCcceecccccccCCCCCC
Confidence                                 0          00   0                                          


Q ss_pred             -----------hhHHH---H-HHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHH-HHHHHHHHHHHHHHHh
Q 013312          337 -----------WVPYA---T-TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISS-FANIVSPLIFSPLTAL  397 (445)
Q Consensus       337 -----------~~~~~---~-~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~-~g~~i~~~~~g~l~~~  397 (445)
                                 ..++.   . ++..+............+.+.+|+|+|.-+.|+...+.+ +|.+-+|.++|++.|.
T Consensus       505 a~~g~C~~~C~~~~~~f~~~~~~~~~~~~~~~~p~~~i~lR~V~~~~rs~alg~~~~~~rllg~iP~pi~fG~~iD~  581 (633)
T TIGR00805       505 AKKGLCNPPCATSLLYFLILFIPLSFIAFITAVPLYMVLLRVVNPEEKSLAIGLQWLCMRVFATIPAPILFGLLIDV  581 (633)
T ss_pred             CcCCCCCcccchhHHHHHHHHHHHHHHHHhccCchheEEeeccCcccchHHhhHHHHHHHHhcCCChhHHHhhhhhc
Confidence                       00110   0 111222233334445566788999999999999998886 5778899999999996

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.94  E-value=6.5e-25  Score=214.30  Aligned_cols=340  Identities=18%  Similarity=0.127  Sum_probs=235.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHhhhccchhH
Q 013312           46 CSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSI  125 (445)
Q Consensus        46 ~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~  125 (445)
                      ...+.....+..+++.+|.++|++++|.++||+|||++++.+.++..++.+..++++|   ++.+++.|++.|+ +.+..
T Consensus       113 ~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~---~~~~~~~Rfl~G~-~~~~~  188 (521)
T KOG0255|consen  113 VCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPN---YWMFLIFRFLSGF-FGSGP  188 (521)
T ss_pred             eeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCc---HHHHHHHHHHHHh-hccch
Confidence            3456678889999999999999999999999999999999999999999999999999   9999999999999 77777


Q ss_pred             HHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhhhhh--chhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCC
Q 013312          126 NCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL--STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDL  203 (445)
Q Consensus       126 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~--~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~  203 (445)
                      ......++.|+.++++|+.+..+ ......+..+++..++++  +||+.+++..++.++.+++ ++..||+++....+.+
T Consensus       189 ~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~~Wr~~~~~~~~~~~~~~~~-~~l~~Es~rwl~~~g~  266 (521)
T KOG0255|consen  189 LTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITRDWRWLFWIISIPSGLFLLL-WFLPPESPRWLLSKGR  266 (521)
T ss_pred             hHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HHccCcChHHHHHcCc
Confidence            78999999999999999999999 666666666677666664  7999999999988776555 5667799986544444


Q ss_pred             ccccchhhhcccc---cCCCCCC----c-ccccccccc-hhHHHHHHhhcchhhHHHHHHHHHHHhhhhhhHHHHHHHHH
Q 013312          204 TRPIITEETEGVN---QNESNSP----V-KIPVCKKIP-SIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLK  274 (445)
Q Consensus       204 ~~~~~~~~~~~~~---~~~~~~~----~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (445)
                      .++..+..++..+   ......+    . .....+... ..+.....+.+.+.+....+...+..+.....+.-++....
T Consensus       267 ~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~y~gl~~~~~  346 (521)
T KOG0255|consen  267 IDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSLVYYGLSLNVS  346 (521)
T ss_pred             hHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHhHHHHhhhhhhh
Confidence            3333332222111   1111000    0 000000000 00011222334443333333333333333332333333333


Q ss_pred             hhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHhcCCch---hHHH-HHHHHhhhh
Q 013312          275 AQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAW---VPYA-TTAFSVLVV  350 (445)
Q Consensus       275 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~g~~~~  350 (445)
                      + +|.+...   .....+....... ...+...|+.|||.....+..+..++.+..++.....   .... ..+..++.+
T Consensus       347 ~-lg~~~~~---~~~~~~~~~~p~~-~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  421 (521)
T KOG0255|consen  347 G-LGGNIYL---NFTLSGLVELPAY-FRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIG  421 (521)
T ss_pred             h-cCchHHH---HHHHHHHHHhhHH-HHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHH
Confidence            2 4544433   3333444555544 6667889999999999999999999998888866432   2333 344456677


Q ss_pred             hhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013312          351 FATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTA  396 (445)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~  396 (445)
                      ..+.....+..|.+|+..|+.+.+..+....++.+++|.+.-....
T Consensus       422 ~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~  467 (521)
T KOG0255|consen  422 SAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQ  467 (521)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            7777779999999999999999999999999999999987654433

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.94  E-value=3.2e-24  Score=206.62  Aligned_cols=369  Identities=10%  Similarity=0.049  Sum_probs=230.2

Q ss_pred             HhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccc-cCchhHhH
Q 013312            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQ-YGRKAMLT   85 (445)
Q Consensus         7 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr-~Grr~~l~   85 (445)
                      ++.++.++...+...++.....+.++.+..+.       ++.+..+.+++.+.+........++.|+++|| +|||+.+.
T Consensus        20 p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~-------lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~   92 (500)
T PRK09584         20 PKAFYLIFSIELWERFGYYGLQGIMAVYLVKQ-------LGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIM   92 (500)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHH
Confidence            44677888888888899888888999998643       35555566777777666666666789999999 59999999


Q ss_pred             HHHHHHHHHHHHHHhhcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccc--hhhHHHHHHHHHhhhhhhhhhh
Q 013312           86 LPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQ--RASAFGILLGVLSASFVCGTLA  163 (445)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~~g~~l  163 (445)
                      .+.++.+++..+++++++.  .+.+++.|+++|+ +.|...|...+++.|++|+++  |.+++++++...++|..+||.+
T Consensus        93 ~g~~~~~ig~~l~~~~~~~--~~~l~~~~~l~gi-g~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i  169 (500)
T PRK09584         93 LGAIVLAIGYALVAWSGHD--AGIVYMGMATIAV-GNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLA  169 (500)
T ss_pred             HHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHH-hhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHH
Confidence            9999999999999887531  5667788999999 888888888999999998643  4568888899999999999988


Q ss_pred             hhh----hchhhHHHHHHHHHHHHHH---HHHHhccCCCCCCC-CcCCccccchhh---------hcccccCCCCCCccc
Q 013312          164 ARF----LSTTSAFQAATIVSMLAAA---YMRVFLKDDVPNDD-DDDLTRPIITEE---------TEGVNQNESNSPVKI  226 (445)
Q Consensus       164 ~~~----~~w~~~f~~~~~~~~i~~~---~~~~~~~e~~~~~~-~~~~~~~~~~~~---------~~~~~~~~~~~~~~~  226 (445)
                      ++.    .|||+.|.+.++...+..+   .....++|..++.+ ++.|..+.....         ..-...+.+   ...
T Consensus       170 ~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  246 (500)
T PRK09584        170 TPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVALIAIATWLLHNQE---IAR  246 (500)
T ss_pred             HHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcch---HHH
Confidence            876    4899999988764444332   22334444321111 111111100000         000000000   000


Q ss_pred             ccccc------cchhHHHHHH-hhcchhhHHHHHHHHHHHhhhhhhHHHHHHHHHh----hc-----CCchhhHHHHHHH
Q 013312          227 PVCKK------IPSIRDLICL-LRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKA----QF-----HFNKNQFADLMLI  290 (445)
Q Consensus       227 ~~~~~------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-----g~~~~~~g~~~~~  290 (445)
                      .....      ....++..+. -.++++.+..+. .++....+.......|.++..    ..     |+. ...+++.+.
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~-i~~~~~~s~  324 (500)
T PRK09584        247 MALGVVALGIVVIFGKEAFAMKGAARRKMIVAFI-LMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIA-VEPEQYQAL  324 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH-HHHHHHHHHHHHHHhccHHHHHHHHhccccccceE-ECHHHHHHH
Confidence            00000      0000000000 001122222222 223333344444444444332    11     111 124566677


Q ss_pred             HHHHHHHHHHHHH----HHhhhhhcchhHHHHHHHHHHHHHHHHHhcCC---------c-hhHHHHHHHHhhhhhhhhhH
Q 013312          291 AGLAGTISQLLFM----PLLAPILGEAKLLSLGLFAACINMFICSISWS---------A-WVPYATTAFSVLVVFATPSF  356 (445)
Q Consensus       291 ~~~~~~~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~-~~~~~~~~~g~~~~~~~~~~  356 (445)
                      ..+..++.. .+.    +++.||.+..+.+.+|+++.+++++.+....+         . |......+.+++.....|..
T Consensus       325 n~i~iil~~-p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g  403 (500)
T PRK09584        325 NPFWIMIGS-PILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISGLG  403 (500)
T ss_pred             hHHHHHHHH-HHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHH
Confidence            776666665 444    44445555567788889999999888766433         2 34444578899999999999


Q ss_pred             HHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHH
Q 013312          357 RSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIF  391 (445)
Q Consensus       357 ~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~  391 (445)
                      .+++.+..|++.||+++|.......+|..++..+.
T Consensus       404 ~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~  438 (500)
T PRK09584        404 LAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVA  438 (500)
T ss_pred             HHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999976666665555554444

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.94  E-value=5.5e-24  Score=188.84  Aligned_cols=376  Identities=13%  Similarity=0.093  Sum_probs=282.6

Q ss_pred             HhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhH-HHHHHHHHHHHHHHhhcC
Q 013312           25 MMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLT-LPLTLSIIPLAILAYRRS  103 (445)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~-~~~~~~~~~~~~~~~~~~  103 (445)
                      -.....+|.|.++..+.+..+..-+....|...++..+..++.+|..|.++|+.|+||... ....+..++.....+.++
T Consensus        32 ivtt~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~  111 (438)
T COG2270          32 IVTTFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPP  111 (438)
T ss_pred             eeeeehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCC
Confidence            3445677888887544332233444567899999999999999999999999999876655 455566666777777766


Q ss_pred             cchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhh------h------------
Q 013312          104 ISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAA------R------------  165 (445)
Q Consensus       104 ~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~------~------------  165 (445)
                      ...++..++.-.+..+ +........++++.|..++++-++..+.-.....+|..+--+..      +            
T Consensus       112 ~s~~~~~l~~~il~~i-~~~~s~Vfyds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l  190 (438)
T COG2270         112 GSYLLLLLLFLILASI-GFEFSNVFYDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGL  190 (438)
T ss_pred             CchHHHHHHHHHHHHH-hcchhheehhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeecc
Confidence            4336677777778888 77777788999999999998877776665555555554322211      1            


Q ss_pred             ----hhchhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCccccchhhhcccccCCCCCCcccccccccchhHHHHHH
Q 013312          166 ----FLSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICL  241 (445)
Q Consensus       166 ----~~~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (445)
                          ...-|..+.+.++..++..+..++..|+.++...+.                       ........+.+++.++.
T Consensus       191 ~~~~~~~~ri~~~l~A~W~li~~iPm~~~v~~~~~~~~~~-----------------------~~~l~~g~k~L~~t~k~  247 (438)
T COG2270         191 PPADGEDVRITGLLAALWWLLFALPMILNVHDAEKISSPP-----------------------PTALRNGFKELKSTFKE  247 (438)
T ss_pred             CccccccchhHHHHHHHHHHHHHhHHHhcccccccccccc-----------------------hHHHHHHHHHHHHHHHH
Confidence                013478888888888887777777777765422110                       00011112234455666


Q ss_pred             hhcchhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHH
Q 013312          242 LRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLF  321 (445)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  321 (445)
                      .++++.+...++..+++.-+..+...+...|....+|++..+...+.....+.+++++ ++.|++.||+|.|+++..+.+
T Consensus       248 i~~~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~-ii~g~Ld~rfg~k~vl~~~lv  326 (438)
T COG2270         248 IRGRKNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGA-IIAGFLDERFGSKPVLMIGLV  326 (438)
T ss_pred             HhcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCceeehHHHH
Confidence            7888899999999999999999999999999998899999999999999999999999 888999999999999999988


Q ss_pred             HHHHHHHHHHhcCCchhHHH-HHHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013312          322 AACINMFICSISWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLS  400 (445)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~  400 (445)
                      +..+..+...+......++. ..+.|...+..+....++..+.+|+++.++.+|+++..+..+...||.+.+.+.+.+++
T Consensus       327 i~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~  406 (438)
T COG2270         327 ILSIAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGS  406 (438)
T ss_pred             HHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcc
Confidence            88777776666655444444 58889999999999999999999999999999999999999999999999999998744


Q ss_pred             CCCCcccchhHHHHHHHHHHHHHHHHHhccCC
Q 013312          401 KGAPFNFPGFSIMCIGLASMVAFIQSLMMSHT  432 (445)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (445)
                      .+.       .+....++.++++...++.+.+
T Consensus       407 ~r~-------g~~~i~vll~iGl~~L~~v~~~  431 (438)
T COG2270         407 SRA-------GVLSIIVLLLIGLLLLLRVKVP  431 (438)
T ss_pred             hhh-------HHHHHHHHHHhhHhhEEeecCC
Confidence            332       2344455566666666655544

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.94  E-value=3.6e-24  Score=184.98  Aligned_cols=373  Identities=14%  Similarity=0.036  Sum_probs=254.2

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHhhhccch
Q 013312           44 DECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEG  123 (445)
Q Consensus        44 ~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g  123 (445)
                      ...+.+..+..++......+..+++..+|..+|++|||+.+........+...+.+.++|   +..+.+.|.+.|+ |.|
T Consensus       106 ~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spn---f~~L~~f~~l~~~-g~g  181 (528)
T KOG0253|consen  106 EVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPN---FASLCVFRALWGF-GVG  181 (528)
T ss_pred             hhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCC---eehhhHHHHHHhc-cCC
Confidence            344677888999999999999999999999999999999999999999999999999999   9999999999999 777


Q ss_pred             hHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhhhh----hchhhHHHHHHHHHHHHHHHHHHhccCCCCCCC
Q 013312          124 SINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDD  199 (445)
Q Consensus       124 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~----~~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~  199 (445)
                      . .|...++-.|..|..+|...+-.. ..+.+|.++...++-.    +||||.......+..+.. ...+++||+++..-
T Consensus       182 g-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a-~f~~w~~ESpRf~~  258 (528)
T KOG0253|consen  182 G-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFAA-RFLVWVYESPRFYL  258 (528)
T ss_pred             C-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHH-HHHhhcccCcchhh
Confidence            7 688999999999998888766666 8888998887766543    699998888776654443 44578999998544


Q ss_pred             CcCCccccchhhh---ccccc---------------CCCCCC----cccccccccchhHHHHHHhhcchhhHHHHHHHHH
Q 013312          200 DDDLTRPIITEET---EGVNQ---------------NESNSP----VKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFF  257 (445)
Q Consensus       200 ~~~~~~~~~~~~~---~~~~~---------------~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (445)
                      .+.+..++++..+   ..++.               +++...    +.+..++......+.+..-+++. -..+....+.
T Consensus       259 ~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~ke~rg~~~nLlsp~lrkt-tlllw~iwfg  337 (528)
T KOG0253|consen  259 AKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAKEVRGGTTNLLSPKLRKT-TLLLWRIWFG  337 (528)
T ss_pred             hcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhccccccccchHhhcChHHHHH-HHHHHHHHHh
Confidence            3333333332221   11110               000000    00111112222333222212222 2223334444


Q ss_pred             HHhhhhhhHHHH-----------------HHHHHhhcCCchh-hHHHH-HHHHHHHHHHHHHHHHHHhhhhhcchhHHHH
Q 013312          258 SGLSEGGMQASF-----------------LYFLKAQFHFNKN-QFADL-MLIAGLAGTISQLLFMPLLAPILGEAKLLSL  318 (445)
Q Consensus       258 ~~~~~~~~~~~~-----------------~~~~~~~~g~~~~-~~g~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  318 (445)
                      ..+.+++.....                 |.+.+-..+-... +.-+. ..+..+....|. ++.+++.||+|||+.+..
T Consensus       338 nafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGl-LIt~~iverlGRKkTMal  416 (528)
T KOG0253|consen  338 NAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGL-LITGVIVERLGRKKTMAL  416 (528)
T ss_pred             hHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCch-hHHHHHHHHhcchhHHHH
Confidence            444444433222                 2222221111110 11111 234445556665 788999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCchhHHH-HHHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013312          319 GLFAACINMFICSISWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTAL  397 (445)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~  397 (445)
                      .+++..+..+.+....+...... .+..-.+..+.+.+.+.|..|.+|+..|+++.|..+.+..+|+++.|.++ ...+.
T Consensus       417 ~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA-~~~e~  495 (528)
T KOG0253|consen  417 SLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA-MRAEL  495 (528)
T ss_pred             HHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH-HHhcc
Confidence            99999998888777665544333 35556778888899999999999999999999999999999999999888 33332


Q ss_pred             hhcCCCCcccchhHHHHHHHHHHHHHHHHHhccCCCCC
Q 013312          398 FLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMSHTPAS  435 (445)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (445)
                               ....+..+.+.+++++.+...+++-+++.
T Consensus       496 ---------s~sl~i~vy~~~~ilagIavcffPiEtkG  524 (528)
T KOG0253|consen  496 ---------STSLPIFVYGALFILAGIAVCFFPIETKG  524 (528)
T ss_pred             ---------ceeehHHHHHHHHHHHHHHheeeeeccCC
Confidence                     22224566777778888877777766653

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.94  E-value=6.8e-24  Score=193.59  Aligned_cols=372  Identities=10%  Similarity=0.036  Sum_probs=245.1

Q ss_pred             cchhhHHHH-HHHHHHHHHHHHHHhhhhccccccccCchhHhHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHhhhccc
Q 013312           44 DECSLAIYL-SGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCE  122 (445)
Q Consensus        44 ~~~~~s~~~-~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~  122 (445)
                      ++++++..+ .|.+.++++.+++++.++.|.++||+|.|+++..+.+.+++..++.+++++   +..+.+.|++.|+ +.
T Consensus        54 ~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~S---l~~L~i~R~llGv-aE  129 (511)
T TIGR00806        54 TVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTS---VWHMQLMEVFYSV-TM  129 (511)
T ss_pred             HHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH-HH
Confidence            356777888 999999999999999999999999999999999999999999999999999   9999999999999 89


Q ss_pred             hhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhhhh---hchhhHHH---HHHHHHHHHHHHHHHhccCCCC
Q 013312          123 GSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF---LSTTSAFQ---AATIVSMLAAAYMRVFLKDDVP  196 (445)
Q Consensus       123 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~---~~w~~~f~---~~~~~~~i~~~~~~~~~~e~~~  196 (445)
                      |... +...++..++|+++|+++.++...+..+|.++++++++.   ++||+-+.   +......++ ++..+++|..++
T Consensus       130 A~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr~y~~Ln~Isl~s~~~a-~~~a~~LP~~~~  207 (511)
T TIGR00806       130 AARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWISYSTLNIISLVFMTFS-VFLALFLKRPKR  207 (511)
T ss_pred             HHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH-HHHHHhCCCCch
Confidence            9998 999999999999999999999999999999999888876   48876543   333333333 344477885443


Q ss_pred             CC--CCcCCccccchhhhcccccCCCCCCcccccccccchhHHHH---HHhhcchhhHHHHHHHHHHHhhhhhhHHHHHH
Q 013312          197 ND--DDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLI---CLLRSSVTLSQAAVVAFFSGLSEGGMQASFLY  271 (445)
Q Consensus       197 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (445)
                      ..  +++++.+.......+...+++..++....+.......+..+   +...+++.+..-.+=..+...++....++...
T Consensus       208 sl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~n~~vl~WSlWwa~a~~g~~qv~~Y~Q~  287 (511)
T TIGR00806       208 SLFFNRLEDVRGALPCELDQMVPGPGGKLEDYLGTCRDSFLVRMLSELVTIYRNPQLLLWSLWWVFNSAGYYLITYYVHT  287 (511)
T ss_pred             hhhhccccccccccccccccCCCCCccccchhhhhhhhHHHHHHHHHHHHHhcCcchhhhhHHHHHHhhHHHHHHHHHHH
Confidence            11  11100000000000000000000000000001111222222   22345555544444444444555555666655


Q ss_pred             HHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcch--hHHHHHHHHHHHHHHHHHhcCCchhHHHH-HHHHhh
Q 013312          272 FLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEA--KLLSLGLFAACINMFICSISWSAWVPYAT-TAFSVL  348 (445)
Q Consensus       272 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~  348 (445)
                      ..++..+-++...|..-++..+.+.+.. +..|++-.++.+.  ..+.+...+.+..++++...++.|..+.. +++...
T Consensus       288 LW~~v~~~~~~yNG~veA~~tllga~~a-~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~~t~~Iw~~Y~~yvlf~~~  366 (511)
T TIGR00806       288 LWGTLDESLNKYNGAVDAASTLLGAITS-FIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMSQSHDIWVLYVTYVLFRGI  366 (511)
T ss_pred             HHHHcCCCccccCCHHHHHHHHHHHHHH-HHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHH
Confidence            5555433222245667777777777777 6667875555432  23444555566667777888899998886 777888


Q ss_pred             hhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhh-h--cCCCCcccchhHHHHHHHHHHHHHHH
Q 013312          349 VVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALF-L--SKGAPFNFPGFSIMCIGLASMVAFIQ  425 (445)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (445)
                      .....+....-+++....+.-|-.+|++++..-+-+.+-..+.   .|.. .  +....+...+..|.+.+.+.++....
T Consensus       367 y~flitia~~~iA~~L~~~~~aLvFGiNtfvAl~LQtilT~iV---vd~~gl~l~i~~Qf~vY~~yf~~~~~i~~~~~~~  443 (511)
T TIGR00806       367 YQFLVPIATFQIASSLSKELCALVFGINTFVATALKTIITAVV---SDKRGLGLQVRKQFRIYSVYFLVLSIICFFGAGL  443 (511)
T ss_pred             HHHHHHHHHHHHHHHhcccceEEEEecHHHHHHHHHHheEEEE---EcccccCCCceeEEEehhhHHHHHHHHHHHHHHH
Confidence            8888899999898888888889999999888876666555432   2321 0  11222233444566666666655443

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.94  E-value=2.7e-23  Score=197.54  Aligned_cols=359  Identities=14%  Similarity=0.084  Sum_probs=248.1

Q ss_pred             HHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHHHHHHHHHHHHHHhh
Q 013312           22 FATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYR  101 (445)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~  101 (445)
                      +........++.+..|.   |.+      ....|+.+.+.++..+..++.|+++|.||||.+++.+.++..+|.++++.+
T Consensus        58 ~~~~~~a~~l~~I~~di---G~~------~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA  128 (599)
T PF06609_consen   58 FVLVLPASILPYINADI---GGS------DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATA  128 (599)
T ss_pred             HHHhccHHHHHHHHHhc---CCC------ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcC
Confidence            33344455666665553   112      234678888999999999999999999999999999999999999999999


Q ss_pred             cCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhhhhh----chhhHHHHHH
Q 013312          102 RSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----STTSAFQAAT  177 (445)
Q Consensus       102 ~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~----~w~~~f~~~~  177 (445)
                      +|   ...++++..+.|+ +.|... .....++|..|.|.|....++...........+|.++..+    +|||.|++.+
T Consensus       129 ~~---~~~~iag~~l~Gv-gaG~~~-~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~  203 (599)
T PF06609_consen  129 QN---MNTFIAGMVLYGV-GAGVQE-LAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFI  203 (599)
T ss_pred             Cc---HHHHHHHHHHHHH-hhHHHH-HHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHH
Confidence            99   9999999999999 777665 5666799999999998888777766655555677777553    8999999999


Q ss_pred             HHHHHHHHHHHHh-ccCCCCCCCCcC-Cccccchhhhc-------------------ccc-cCCCCCCcc----------
Q 013312          178 IVSMLAAAYMRVF-LKDDVPNDDDDD-LTRPIITEETE-------------------GVN-QNESNSPVK----------  225 (445)
Q Consensus       178 ~~~~i~~~~~~~~-~~e~~~~~~~~~-~~~~~~~~~~~-------------------~~~-~~~~~~~~~----------  225 (445)
                      +...+.++...++ .|++.++.+.++ ..++...+.+-                   ... ..++.+...          
T Consensus       204 i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~  283 (599)
T PF06609_consen  204 IWSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVL  283 (599)
T ss_pred             HHHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHH
Confidence            8877766555443 333322111111 11111111110                   111 123333211          


Q ss_pred             -------cccccccchhHHHHHHhhcchhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchh---hHHHHHHHHHHHH
Q 013312          226 -------IPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKN---QFADLMLIAGLAG  295 (445)
Q Consensus       226 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~g~~~~~~~~~~  295 (445)
                             |.....++++.+ .+.++++|.+...++..++....++....+.|......++-|+.   +.++.....+++.
T Consensus       284 Lv~F~~wE~~~~~~~Pl~P-~~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~  362 (599)
T PF06609_consen  284 LVAFVVWEWFGAPKDPLFP-HRLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGS  362 (599)
T ss_pred             HHHHHHhhhhccCCCCcCC-HHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHH
Confidence                   111111222222 22343446676667777777777788888889988887777663   4677777888888


Q ss_pred             HHHHHHHHHHhhhhhcc-hhHHHHHHHHHHHHHHHHHhcC--Cch-hHHHHHHHHhhhhhhhhhHHHHHhcccCCccchh
Q 013312          296 TISQLLFMPLLAPILGE-AKLLSLGLFAACINMFICSISW--SAW-VPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGK  371 (445)
Q Consensus       296 ~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~  371 (445)
                      .++. .+.+.+..+.++ |+.++++..++.+++..++...  +.. .....++.+++.+..........+-..|+++.|+
T Consensus       363 ~~g~-~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~  441 (599)
T PF06609_consen  363 CAGA-VILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGT  441 (599)
T ss_pred             HHHH-HHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHH
Confidence            8877 666788887776 4555677766666555555432  222 2333466788888888888888888899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013312          372 AQGCISGISSFANIVSPLIFSPLTA  396 (445)
Q Consensus       372 ~~g~~~~~~~~g~~i~~~~~g~l~~  396 (445)
                      +.|+...++.+|+.+|..+...++.
T Consensus       442 a~gL~~s~R~~GGsIg~aIy~~I~~  466 (599)
T PF06609_consen  442 ATGLTGSIRSIGGSIGYAIYNAIFT  466 (599)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            9999999999999999998877764

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK09669 putative symporter YagG; Provisional

Probab=99.93  E-value=3.4e-23  Score=198.08  Aligned_cols=343  Identities=13%  Similarity=0.057  Sum_probs=231.6

Q ss_pred             HHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccc----cCchhH-hHHHHHHHH
Q 013312           18 FLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQ----YGRKAM-LTLPLTLSI   92 (445)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr----~Grr~~-l~~~~~~~~   92 (445)
                      +-..+........++.+..       ++++++..+.|.+.++..+..++..|+.|.++||    +||||. ++.+....+
T Consensus        19 ~~~~~~~~~~~~~l~~~~t-------~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~   91 (444)
T PRK09669         19 TACNLVWQTVMLFLAYFYT-------DVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFG   91 (444)
T ss_pred             hhhhHHHHHHHHHHHHHHH-------HhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHH
Confidence            3333334455556666664       4568889999999999999999999999999998    788555 556777777


Q ss_pred             HHHHHHHhhcCcc---hhHHHHHHHHHhhhccchhHHHHHHHHHhcCC-CccchhhHHHHHHHHHhhhhhhhhhhh----
Q 013312           93 IPLAILAYRRSIS---FFYAYYALRTLTAMVCEGSINCLALAYVADNI-SERQRASAFGILLGVLSASFVCGTLAA----  164 (445)
Q Consensus        93 ~~~~~~~~~~~~~---~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~g~~l~----  164 (445)
                      ++..+....++.+   .++++++...+.+. +.........++.+|+. +++||++..++......+|..+++.+.    
T Consensus        92 i~~~l~f~~p~~~~~~~~~~~~~~~~l~~~-~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~  170 (444)
T PRK09669         92 VVCLLTFYTPDFGATGKIIYACVTYILLSL-VYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLV  170 (444)
T ss_pred             HHHHHHHhCCCCCcchHHHHHHHHHHHHHH-HHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7776666565421   14556666666676 45556667789999998 468899988888888777776665432    


Q ss_pred             hh-------hchhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCccccchhhhcccccCCCCCCcccccccccchhHH
Q 013312          165 RF-------LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRD  237 (445)
Q Consensus       165 ~~-------~~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (445)
                      ..       .+|+..+.+.+++..+..+...+..+|.++++++                              ++.+.++
T Consensus       171 ~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e~~~~~~~------------------------------~~~~~~~  220 (444)
T PRK09669        171 DILGKGDEQKGYFYAMMVMGLLGVVLFFCCFFMTKERYTPEVD------------------------------NSSSVWK  220 (444)
T ss_pred             HHhCCCchhhhHHHHHHHHHHHHHHHHHHHhCCeEEecCCCCc------------------------------CCCCHHH
Confidence            22       2577777777777666655555555553221100                              0012334


Q ss_pred             HHHHhhcchhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHH
Q 013312          238 LICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLS  317 (445)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  317 (445)
                      ..+..++||.++.++...++............+.|.++..+ ++...+.+.....+..+++. ++.+++.||+|+|+...
T Consensus       221 ~~~~~~~n~~~~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~-~~~~~~~~~~~~~i~~ii~~-~~~~~l~~r~gk~~~~~  298 (444)
T PRK09669        221 DLKLLLGNSQWRIMFIFNVVLLTAVVTRGGATLYYVNYVLL-RPDLATLFLVTGMIAGLFGA-LLSERLLGKFDRVRAFK  298 (444)
T ss_pred             HHHHHhCCchHHHHHHHHHHHHHHHHHHhhhhheeeeeecC-CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhChHHHHH
Confidence            44556778888877776666655555555555555555443 33333445555556666665 77789999999999988


Q ss_pred             HHHHHHHHHHHHHHh-c-CCchhHHH-HHHHHhhhhhhhhhHHHHHhcccC-------CccchhHHHHHHHHHHHHHHHH
Q 013312          318 LGLFAACINMFICSI-S-WSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVG-------PNEQGKAQGCISGISSFANIVS  387 (445)
Q Consensus       318 ~~~~~~~~~~~~~~~-~-~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~-------~~~~g~~~g~~~~~~~~g~~i~  387 (445)
                      .+.....+....+.+ . ++.+..+. ..+.+++.+...+...++++|..+       ++..|..+|..+....+|..++
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg  378 (444)
T PRK09669        299 WTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIG  378 (444)
T ss_pred             HHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHH
Confidence            877665543332222 2 23443333 366788999999999999998875       2334778899999999999999


Q ss_pred             HHHHHHHHHhhhcC
Q 013312          388 PLIFSPLTALFLSK  401 (445)
Q Consensus       388 ~~~~g~l~~~~~~~  401 (445)
                      +.+.|.+.+.. ++
T Consensus       379 ~~i~g~ll~~~-Gy  391 (444)
T PRK09669        379 GAVVGWILAWV-DY  391 (444)
T ss_pred             HHHHHHHHHHc-CC
Confidence            99999999986 44

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.93  E-value=7.1e-23  Score=197.04  Aligned_cols=350  Identities=11%  Similarity=0.052  Sum_probs=244.9

Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhcccccc----ccCch-hHhHHHH
Q 013312           14 FVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSD----QYGRK-AMLTLPL   88 (445)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~D----r~Grr-~~l~~~~   88 (445)
                      -++.+-..+..+++.+.++.|..|       ..+++...+|.+..+..+..++..|+.|.++|    |+||| +.++.+.
T Consensus        12 g~g~~~~~~~~~~~~~~l~~yyt~-------v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~   84 (473)
T PRK10429         12 GFGAFGKDFAIGIVYMYLMYYYTD-------VVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGT   84 (473)
T ss_pred             ccchhHHhHHHHHHHHHHHHHHHH-------hcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhh
Confidence            345555666777777888888764       45788899999999999999999999999999    66994 5556677


Q ss_pred             HHHHHHHHHHHhhcCcc---hhHHHHHHHHHhhhccchhHHHHHHHHHhcCC-CccchhhHHHHHHHHHhhhhhhhhhhh
Q 013312           89 TLSIIPLAILAYRRSIS---FFYAYYALRTLTAMVCEGSINCLALAYVADNI-SERQRASAFGILLGVLSASFVCGTLAA  164 (445)
Q Consensus        89 ~~~~~~~~~~~~~~~~~---~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~g~~l~  164 (445)
                      ...+++..++...++.+   .+.++++...+.++ +.....+...++..|.. +++||.+..++.....++|..+.+.+.
T Consensus        85 i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~~~-~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~  163 (473)
T PRK10429         85 LANSVVLFLLFSAHLFEGTAQYVFVCVTYILWGM-TYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFT  163 (473)
T ss_pred             HHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHH-HHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77788766665544321   14455666667677 66677778889999999 589999999987776666644443322


Q ss_pred             h----h-------hchhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCccccchhhhcccccCCCCCCcccccccccc
Q 013312          165 R----F-------LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIP  233 (445)
Q Consensus       165 ~----~-------~~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (445)
                      .    .       .+|+....+.+++..+..+...+..||.+++.+.+                         .+.+++.
T Consensus       164 ~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~~~~~-------------------------~~~~~~~  218 (473)
T PRK10429        164 LPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVYSSDNQV-------------------------SAEGSHL  218 (473)
T ss_pred             HHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCceecCCccccc-------------------------cccccCC
Confidence            1    1       24566666666665555555555566643221110                         0011223


Q ss_pred             hhHHHHHHhhcchhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcch
Q 013312          234 SIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEA  313 (445)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~  313 (445)
                      +.++.++.+++||.++.++...++..........+.+.|.+... .++...+.+.....+..+++. ++.+++.||+|+|
T Consensus       219 ~~~~~~~~~~~n~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~-~~~~~~~~~~~~~~i~~ii~~-~~~~~l~~r~gkk  296 (473)
T PRK10429        219 TLKDIVALIYKNDQLSCLLGMALAYNIASNIINGFAIYYFTYVI-GDADLFPYYLSYAGAANLVTL-ILFPRLVKSLSRR  296 (473)
T ss_pred             CHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhheeeEEEEEC-CCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCcH
Confidence            46677777778888888888787777777766677766666543 355666777777777888877 7778999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHh-----cCCchhHHH-HHHHHhhhhhhhhhHHHHHhcccC-------CccchhHHHHHHHHH
Q 013312          314 KLLSLGLFAACINMFICSI-----SWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVG-------PNEQGKAQGCISGIS  380 (445)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~-------~~~~g~~~g~~~~~~  380 (445)
                      +.+..+..+..++.+.+..     ..+.+.... ..+.+++.+...+...++++|..|       .+..|..+|..+...
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~  376 (473)
T PRK10429        297 ILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVV  376 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHH
Confidence            9988777766655444332     122333333 356678888888888999998866       333466999999999


Q ss_pred             HHHHHHHHHHHHHHHHhh
Q 013312          381 SFANIVSPLIFSPLTALF  398 (445)
Q Consensus       381 ~~g~~i~~~~~g~l~~~~  398 (445)
                      .++..+++.+.|.+.+..
T Consensus       377 K~~~al~~~i~g~~l~~~  394 (473)
T PRK10429        377 KGGSAFAAFFIGVVLGLI  394 (473)
T ss_pred             HHHHHHHHHHHHHHHHHc
Confidence            999999999999999876

>PRK09848 glucuronide transporter; Provisional

Probab=99.93  E-value=1.7e-23  Score=200.53  Aligned_cols=345  Identities=12%  Similarity=0.008  Sum_probs=232.2

Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhcccccccc----CchhHh-HHHH
Q 013312           14 FVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQY----GRKAML-TLPL   88 (445)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~----Grr~~l-~~~~   88 (445)
                      .+..+...+...+..+.++.|.++       ..+++..+.|.+.++..+..++..|+.|+++||.    ||||.+ ..+.
T Consensus        14 g~g~~~~~~~~~~~~~~l~~y~~~-------~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~   86 (448)
T PRK09848         14 SLGDVANNFAFAMGALFLLSYYTD-------VAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGT   86 (448)
T ss_pred             ccchHHhHHHHHHHHHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHH
Confidence            345556677777777888877764       4477788999999999999999999999999996    777755 5555


Q ss_pred             HHHHHHHHHHHhhc-Cc---chhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCc-cchhhHHHHHHHH-----Hhhhhh
Q 013312           89 TLSIIPLAILAYRR-SI---SFFYAYYALRTLTAMVCEGSINCLALAYVADNISE-RQRASAFGILLGV-----LSASFV  158 (445)
Q Consensus        89 ~~~~~~~~~~~~~~-~~---~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~-----~~~g~~  158 (445)
                      +...+...+....+ ..   ...+..++...+.++ +.+...+...++..+..++ +||.+..+.-...     ..++..
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~  165 (448)
T PRK09848         87 APLMIFSVLVFWVPTDWSHSSKVVYAYLTYMGLGL-CYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFL  165 (448)
T ss_pred             HHHHHHHHHHHhCcCCCCcchHHHHHHHHHHHHHH-HHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            54444444432222 10   113334555566777 6677777777777776654 6788876665543     234556


Q ss_pred             hhhhhhhhhc------hhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCccccchhhhcccccCCCCCCccccccccc
Q 013312          159 CGTLAARFLS------TTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKI  232 (445)
Q Consensus       159 ~g~~l~~~~~------w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (445)
                      ++|.++...+      |.....+.+++..+..++.....||+++++.+                               +
T Consensus       166 ~~p~i~~~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~e~~~~~~~-------------------------------~  214 (448)
T PRK09848        166 IGPSIKNSSPEEMVSVYHFWTIVLAIAGMVLYFICFKSTRENVVRIVA-------------------------------Q  214 (448)
T ss_pred             HHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCcEeccCCCcc-------------------------------C
Confidence            6676665432      11111222223333333333344544221111                               0


Q ss_pred             chhHHHHHHhhcchhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 013312          233 PSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGE  312 (445)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~  312 (445)
                      .+.++.++.++++|.++...+..++............|.|.++.+|.++...++......+..+++. +..+++.||+++
T Consensus       215 ~~~~~~~~~l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~r~g~  293 (448)
T PRK09848        215 PSLKISLQTLKRNRPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASA-PLVPGMVARIGK  293 (448)
T ss_pred             CCHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCc
Confidence            1234445557788888888877777777777777788888888888776654444444455566666 777899999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHhcC--CchhHHH-HHHHHhhhhhhhhhHHHHHhcccCCc-------cchhHHHHHHHHHHH
Q 013312          313 AKLLSLGLFAACINMFICSISW--SAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPN-------EQGKAQGCISGISSF  382 (445)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~g~~~g~~~~~~~~  382 (445)
                      |+.+..+..+..++.+.+.+.+  +.+.... ..+.+++.+...+...+..+|..|.+       ++|...|+.+....+
T Consensus       294 ~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~kl  373 (448)
T PRK09848        294 KNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKC  373 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHH
Confidence            9999999888888777666644  3343333 35678888888899999988887654       459999999999999


Q ss_pred             HHHHHHHHHHHHHHhh
Q 013312          383 ANIVSPLIFSPLTALF  398 (445)
Q Consensus       383 g~~i~~~~~g~l~~~~  398 (445)
                      |..+++.+.|.+.+..
T Consensus       374 g~aig~~i~g~~l~~~  389 (448)
T PRK09848        374 GQAIGGSIPAFILGLS  389 (448)
T ss_pred             HHHHHHHHHHHHHHHc
Confidence            9999999999998875

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.93  E-value=3.6e-23  Score=196.93  Aligned_cols=324  Identities=15%  Similarity=0.125  Sum_probs=253.6

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHhhhhcccccc----ccCchhHhH-HHHHHHHHHHHHHHhh-c-Ccc---hhHHHHHH
Q 013312           44 DECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSD----QYGRKAMLT-LPLTLSIIPLAILAYR-R-SIS---FFYAYYAL  113 (445)
Q Consensus        44 ~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~D----r~Grr~~l~-~~~~~~~~~~~~~~~~-~-~~~---~~~~l~~~  113 (445)
                      +..++++...|.+..+..+..++..|+.|.++|    |+||||.++ ++....+++..++... | +.+   ...++.+.
T Consensus        30 ~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~  109 (428)
T PF13347_consen   30 DVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVF  109 (428)
T ss_pred             HHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHH
Confidence            445788899999999999999999999999999    899877655 6778888888877766 4 211   13445677


Q ss_pred             HHHhhhccchhHHHHHHHHHhcCCC-ccchhhHHHHHHHHHhhhhhhhhhhhh----hh-------chhhHHHHHHHHHH
Q 013312          114 RTLTAMVCEGSINCLALAYVADNIS-ERQRASAFGILLGVLSASFVCGTLAAR----FL-------STTSAFQAATIVSM  181 (445)
Q Consensus       114 r~l~G~~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~l~~----~~-------~w~~~f~~~~~~~~  181 (445)
                      .++..+ +.........++..|..+ ++||.+..+.-+....+|..+...+..    .+       +|++...+.+++.+
T Consensus       110 ~~l~~~-~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~  188 (428)
T PF13347_consen  110 YILFDI-AYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGL  188 (428)
T ss_pred             HHHHHH-hhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHH
Confidence            777787 777777788999999998 578999999988888888754433322    21       58888888888888


Q ss_pred             HHHHHHHHhccCCCCCCCCcCCccccchhhhcccccCCCCCCcccccccccchhHHHHHHhhcchhhHHHHHHHHHHHhh
Q 013312          182 LAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLS  261 (445)
Q Consensus       182 i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (445)
                      +..++..+..||++++.++                            ++++.+.++.++..+++|.++.++...++....
T Consensus       189 v~~~i~~~~~ke~~~~~~~----------------------------~~~~~~~~~~~~~~~~nr~~~~l~~~~~~~~~~  240 (428)
T PF13347_consen  189 VFFLITFFFVKERSVEVTE----------------------------QEKKISLRDSLRSLFRNRPFRILLLAFFLQWLA  240 (428)
T ss_pred             HHhhhhhheeeeccccccc----------------------------cccccccccchhhhcccchHHHHHHHHHHHHhh
Confidence            8888887888882221111                            111123445555677888888888888888888


Q ss_pred             hhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHhcC--CchhH
Q 013312          262 EGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISW--SAWVP  339 (445)
Q Consensus       262 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  339 (445)
                      ........+.|.++..|.+ ...+.+.....+..+++. ++.++++||+|+|+....+..+..++.+.+.+.+  +.+..
T Consensus       241 ~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~-~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (428)
T PF13347_consen  241 FALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGS-PLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLV  318 (428)
T ss_pred             hhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHH-HHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHH
Confidence            8888888999999988877 455777777888888877 7779999999999999999999999888877765  55555


Q ss_pred             HH-HHHHHhhhhhhhhhHHHHHhcccCC-------ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013312          340 YA-TTAFSVLVVFATPSFRSIVSKQVGP-------NEQGKAQGCISGISSFANIVSPLIFSPLTALF  398 (445)
Q Consensus       340 ~~-~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~  398 (445)
                      +. ..+.+++.+.......++.+|..+.       ++.|..+|+.+....++..+++.+.|.+.+..
T Consensus       319 ~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~  385 (428)
T PF13347_consen  319 LILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALV  385 (428)
T ss_pred             HHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHh
Confidence            55 4777999999999999999988863       44699999999999999999999999998876

>TIGR00788 fbt folate/biopterin transporter

Probab=99.92  E-value=5e-23  Score=196.69  Aligned_cols=392  Identities=12%  Similarity=0.039  Sum_probs=253.1

Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccC-----chhHhH
Q 013312           11 SHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYG-----RKAMLT   85 (445)
Q Consensus        11 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~G-----rr~~l~   85 (445)
                      ..+....+..++. ++....++.+++       ++++++..+++...+...++..+-.+ +|+++||++     ||+.++
T Consensus        29 ~~~~~~y~~qGl~-~l~~~~~~~~l~-------~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~   99 (468)
T TIGR00788        29 AIGLQVLFVKGIA-GLMRLPLSPMLT-------DDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLV   99 (468)
T ss_pred             HHHHHHHHHhhHH-HHhhhhhhHHHH-------HhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHH
Confidence            3444445566666 555555666654       44577888898999999999998555 999999997     677777


Q ss_pred             HHHHHH-HHHHHHHHhhcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHH---HHHHHHHhhhhhhhh
Q 013312           86 LPLTLS-IIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAF---GILLGVLSASFVCGT  161 (445)
Q Consensus        86 ~~~~~~-~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~---~~~~~~~~~g~~~g~  161 (445)
                      ++.++. ++.....+..++  ......+..++.++ +.+...++..++..|..+ |++....   +......++|.++|+
T Consensus       100 ~~~~l~~~~~~~~l~~~~~--~~~~~~~~~~l~~~-~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~  175 (468)
T TIGR00788       100 LSGLLGSAILYGLLPGKVS--SAKVAAAFIFLAAL-AKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISS  175 (468)
T ss_pred             HHHHHHHHHHHHhcccccc--hHHHHHHHHHHHHH-HHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHH
Confidence            777665 344333333344  13344447889998 888999999999999998 5544432   233333446777777


Q ss_pred             hhhhh----hchhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCccccchhhhcccccCCCCCCcccc-cccccchhH
Q 013312          162 LAARF----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIP-VCKKIPSIR  236 (445)
Q Consensus       162 ~l~~~----~~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  236 (445)
                      .+++.    ++|+..|++.+.+.++. .....++||++....++.+.+.           .......... ....++..+
T Consensus       176 ~l~G~l~~~~~~~~~f~~~a~l~ll~-~~~~~~~~E~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~  243 (468)
T TIGR00788       176 LLGGPLLDKTLTRILFLITAALLLLQ-LFVSNLSKERRAFVRPRIGTYL-----------EMNMALLTLGVLANVKVQIL  243 (468)
T ss_pred             HHHHHHHHhcCcchHHHHHHHHHHHH-HHHHHhcccccccccccccccc-----------hhhhhhhhhhHHHHHHHHHH
Confidence            77765    58999999988887666 4445677876421111000000           0000000000 000111233


Q ss_pred             HHHHHhhcchhhHHHHHHHHH-HHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhH
Q 013312          237 DLICLLRSSVTLSQAAVVAFF-SGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKL  315 (445)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  315 (445)
                      +.++. .++|.++..++..++ +.........++ .+..+..|+++.+.|......+++.+++. ...+++.+|++.|++
T Consensus       244 ~l~~~-l~~~~i~~~l~fifl~~~~~~~~~~~~f-~~~~~~lG~s~~~~G~~~~~~~v~~i~g~-~~~~~~~~~~~~r~~  320 (468)
T TIGR00788       244 GLRGA-IQLLEIAKPLIFIFLSYANLPGASGSVF-CATTQCLPGGPSFSGMSKVVGNLGSLCGV-GGYDRFLKTFPYRLL  320 (468)
T ss_pred             HHHHH-HhcHHHHHHHHHHHHHHhhcCCCCceeE-EEEcccCCCCcchhhhHHHHHHHHHHHHH-HHHHHHHhhCCHHHH
Confidence            44444 455666655554444 322222222211 13334589999999999999999999988 667888899999999


Q ss_pred             HHHHHHHHHHHHHHHHhc----------CCchhHHH-HHHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHH
Q 013312          316 LSLGLFAACINMFICSIS----------WSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFAN  384 (445)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~----------~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~  384 (445)
                      +.++.++.+++.......          ++.+.... ..+.+++.+........++++..|++.+|+.+++.+.+.++|.
T Consensus       321 l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~  400 (468)
T TIGR00788       321 FGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGS  400 (468)
T ss_pred             HHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHH
Confidence            999998888876554311          22222222 3666788888888889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhcCCCCcccchhHHHHHHHHHHHHHHHHHhcc
Q 013312          385 IVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMS  430 (445)
Q Consensus       385 ~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (445)
                      .+++.++|.+.++.+.....+........++.+..++.+.+...++
T Consensus       401 ~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~l~~~~llP  446 (468)
T TIGR00788       401 SVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLPLPLLHLLP  446 (468)
T ss_pred             HHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHHhCC
Confidence            9999999999998853333333333334455555556666665555

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=99.92  E-value=4.9e-22  Score=185.60  Aligned_cols=373  Identities=32%  Similarity=0.523  Sum_probs=278.2

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcch-hhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHHH
Q 013312           10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDEC-SLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL   88 (445)
Q Consensus        10 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~   88 (445)
                      ...+....++..++.++..+..........+...++. ..+....+.-.....+...+.++..|.++||+|||..+....
T Consensus        20 ~~~~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~   99 (463)
T KOG2816|consen   20 MRHLEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLPL   99 (463)
T ss_pred             hhHHHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHH
Confidence            3455666777888887777666555544332222222 222223333333447888999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCcchhHHHHHHHHHhhh-ccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhhhhh
Q 013312           89 TLSIIPLAILAYRRSISFFYAYYALRTLTAM-VCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL  167 (445)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~-~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~  167 (445)
                      +...+..+...+...    |.++    +.++ ++.+.......++++|....++|...+++.+.....+..++|.+++..
T Consensus       100 ~~~~l~~~~~~~~~~----~~~~----~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~  171 (463)
T KOG2816|consen  100 FGTILPALCLLFQGY----WFFL----LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYL  171 (463)
T ss_pred             HHHHHhHHHHHHHHH----HHhh----hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            999888877777662    3333    4444 223566678999999999999999999999999999999999998874


Q ss_pred             ----chhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCccccchhhhcccccCCCCCCcccccccccchhHHHHHHhh
Q 013312          168 ----STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLR  243 (445)
Q Consensus       168 ----~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (445)
                          +.-..|.+..+..++..++..+.+||+..++++++ .            ...+..+.........+..+...+ ..
T Consensus       172 ~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~-~------------~~~~~~~~~~~~~~~~~~~~~~~~-~~  237 (463)
T KOG2816|consen  172 VKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSD-A------------TLRELTPGSLDSSHVADAFQSLTK-VG  237 (463)
T ss_pred             HHhcCchHHHHHHHHHHHHHHHHHhhccccccCcccccc-c------------cccccCCCcccchhhhhhhhhhcc-cC
Confidence                77889999999999999999999999876655531 0            000000001111111112222122 33


Q ss_pred             cchhhHHHHHHHHHHHhhhhh-hHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHH
Q 013312          244 SSVTLSQAAVVAFFSGLSEGG-MQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFA  322 (445)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  322 (445)
                      ++|..+.++...++....... .....+.|++..+++++.+.+.+.+..+....+++.+..+.+.+.++.++.+..|...
T Consensus       238 ~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~  317 (463)
T KOG2816|consen  238 PDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLS  317 (463)
T ss_pred             CCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHH
Confidence            455555545555444443332 2224578888899999999999999999999999988888999999999999999999


Q ss_pred             HHHHHHHHHhcCCchhHHHHHHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 013312          323 ACINMFICSISWSAWVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKG  402 (445)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~  402 (445)
                      ..+....++++++.|..+.............|...+..+..++++++|+++++...+..+...++|.+.+.++..+....
T Consensus       318 ~~~~~~~~af~~~~w~~~~~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~t~~~~  397 (463)
T KOG2816|consen  318 EFLQLLLFAFATETWMMFAAGVVVALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFALTLDDL  397 (463)
T ss_pred             HHHHHHHHHHhccchhhhHHHHHHHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHHHHHhc
Confidence            99999999999999999998888888899999999999999999999999999999999999999999999988775544


Q ss_pred             CC
Q 013312          403 AP  404 (445)
Q Consensus       403 ~~  404 (445)
                      .+
T Consensus       398 ~~  399 (463)
T KOG2816|consen  398 PG  399 (463)
T ss_pred             cc
Confidence            43

>TIGR01272 gluP glucose/galactose transporter

Probab=99.91  E-value=2e-21  Score=175.48  Aligned_cols=259  Identities=12%  Similarity=0.095  Sum_probs=198.3

Q ss_pred             hHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhhhh--------------------
Q 013312          107 FYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF--------------------  166 (445)
Q Consensus       107 ~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~--------------------  166 (445)
                      ++.++++-++.|. |.+...+..+.++++..++|++++.+++.+..+++|..+||.+++.                    
T Consensus        10 ~~~~l~~~f~~g~-G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~~   88 (310)
T TIGR01272        10 YVLFLGALFVLAS-GLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAEA   88 (310)
T ss_pred             HHHHHHHHHHHHh-hHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHHH
Confidence            8999999999999 9999999999999999999999999999999999999999999874                    


Q ss_pred             hchhhHHHHHHHHHHHHHHHH-HHhccCCCCCCCCcCCccccchhhhcccccCCCCCCcccccccccchhHHHHHHhhcc
Q 013312          167 LSTTSAFQAATIVSMLAAAYM-RVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSS  245 (445)
Q Consensus       167 ~~w~~~f~~~~~~~~i~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (445)
                      ..|+++|++.+.+..+..+.. ...+||.+++++++                .      .++  +. ...++    ..++
T Consensus        89 ~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~~~~~~----------------~------~~~--~~-~~~~~----~~~~  139 (310)
T TIGR01272        89 AKVHTPYLLLAGALAVLAIIFAFLPLPELQEADVAR----------------V------SSG--DT-TQKTS----AFQF  139 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCCCCCcccccc----------------c------ccc--cc-cchhh----HHhh
Confidence            258889986665544443332 22334422111100                0      000  00 00011    2345


Q ss_pred             hhhHHHHHHHHHHHhhhhhhHHHHHHHHHhh--cCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHH
Q 013312          246 VTLSQAAVVAFFSGLSEGGMQASFLYFLKAQ--FHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAA  323 (445)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  323 (445)
                      |.++...+..+++.....+...|.+.|+++.  +|+++.+.+...+....+.++++ ++.+++.||+++|+.+..+..+.
T Consensus       140 ~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr-~~~~~l~~r~g~~~~l~~~~~l~  218 (310)
T TIGR01272       140 THLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGR-FIGSAVMPMISQGRYLAFNAFLA  218 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCHHHHHHHHHHHH
Confidence            6666667777777778889999999999864  69999999999999999999998 88899999999999988888877


Q ss_pred             HHHHHHHHhcCCchhHHHHHHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013312          324 CINMFICSISWSAWVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALF  398 (445)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~  398 (445)
                      .++.++....++.+..+...+.+++.+..+|...+...+..|+ +.+++.++. .+..+|+.+.|.+.|.+.|..
T Consensus       219 ~~~~~l~~~~~~~~~~~~~~l~g~~~s~i~P~~~s~a~~~~~~-~~~~asai~-~~~~~Gg~i~P~l~G~lad~~  291 (310)
T TIGR01272       219 VLLSIGAALTHGYVAMWFVLALGLFNSIMFPTIFSLALNALGR-HTSQGSGIL-CLAIVGGAIVPLLQGSLADCL  291 (310)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhhhhHHHH-HHHHhcchHHHHHHHHHHHhc
Confidence            7776655555544444455678899999999999999988874 456777774 678899999999999999976

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.91  E-value=6.3e-21  Score=175.11  Aligned_cols=350  Identities=15%  Similarity=0.083  Sum_probs=272.7

Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccc----cCchhH-hHHHH
Q 013312           14 FVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQ----YGRKAM-LTLPL   88 (445)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr----~Grr~~-l~~~~   88 (445)
                      -...+...+........+..+..       |.+++++...|.+..+.-+--++..|+.|.++||    +||+|. ++.+.
T Consensus        18 g~gd~~~~~~~~~~~~yLl~fYT-------dv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~   90 (467)
T COG2211          18 GLGDFASNFAFGIVVLYLLFFYT-------DVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGA   90 (467)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHh-------cccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHh
Confidence            34445555555666666666654       5678999999999999999999999999999995    788655 55677


Q ss_pred             HHHHHHHHHHHhhcCcc---hhHHHHHHHHHhhhccchhHHHHHHHHHhcCCC-ccchhhHHHHHHHHHhhhhhhh----
Q 013312           89 TLSIIPLAILAYRRSIS---FFYAYYALRTLTAMVCEGSINCLALAYVADNIS-ERQRASAFGILLGVLSASFVCG----  160 (445)
Q Consensus        89 ~~~~~~~~~~~~~~~~~---~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g----  160 (445)
                      +..++.+.++..+++.+   .....++...+.++ +.........++.+|..+ ++||.+..++-+...++|..+.    
T Consensus        91 ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l-~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~  169 (467)
T COG2211          91 IPFAIVAVLLFITPDFSMTGKLIYALVTYMLLGL-GYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLF  169 (467)
T ss_pred             HHHHHHHHHHHcCCCcccCcchHHHHHHHHHHHH-HHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88999999998888532   15666777888888 777777788899999986 5899999999999888886553    


Q ss_pred             -hhhhh------hhchhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCccccchhhhcccccCCCCCCcccccccccc
Q 013312          161 -TLAAR------FLSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIP  233 (445)
Q Consensus       161 -~~l~~------~~~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (445)
                       |++..      ..||+..-.+.+++..+..+.+++..+|.+.+..+.                          +.+.+.
T Consensus       170 ~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~--------------------------~~~~~~  223 (467)
T COG2211         170 PPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPT--------------------------KTGVKL  223 (467)
T ss_pred             HHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccC--------------------------cccccc
Confidence             33322      247788778888888888888888888876533321                          011223


Q ss_pred             hhHHHHHHhhcchhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcch
Q 013312          234 SIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEA  313 (445)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~  313 (445)
                      ++++.+...++||.++..++..++...+.....+....|.+...|.++..............+++. +..+++.+|+|+|
T Consensus       224 ~~~~~~~~~~~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~-~~~p~L~~~~gkk  302 (467)
T COG2211         224 KLKDSFLLIFKNRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGL-ILWPRLVKKFGKK  302 (467)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHH-HhHHHHHHHhchH
Confidence            556556667788888888888888888888888888899988888888887777777777766656 7779999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHhcC--CchhHHHH-HHHHhhhhhhhhhHHHHHhcccC-------CccchhHHHHHHHHHHHH
Q 013312          314 KLLSLGLFAACINMFICSISW--SAWVPYAT-TAFSVLVVFATPSFRSIVSKQVG-------PNEQGKAQGCISGISSFA  383 (445)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~-------~~~~g~~~g~~~~~~~~g  383 (445)
                      ++...+.++..++.+.+.+.+  +.+..++. ++.+++.+...+..+++++|.++       .+..|...|.......+|
T Consensus       303 ~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g  382 (467)
T COG2211         303 KLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLG  382 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHH
Confidence            999999999999988888776  33344443 66789999999999999988765       344589999999999999


Q ss_pred             HHHHHHHHHHHHHhh
Q 013312          384 NIVSPLIFSPLTALF  398 (445)
Q Consensus       384 ~~i~~~~~g~l~~~~  398 (445)
                      .+++..+.|++.+..
T Consensus       383 ~ala~~~~g~~L~~~  397 (467)
T COG2211         383 LALAGFIPGWILGAI  397 (467)
T ss_pred             HHHHHHHHHHHHHHc
Confidence            999999999999987

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.90  E-value=2.1e-20  Score=176.28  Aligned_cols=378  Identities=10%  Similarity=0.029  Sum_probs=227.5

Q ss_pred             hhHhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhcccccccc-CchhH
Q 013312            5 KEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQY-GRKAM   83 (445)
Q Consensus         5 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~-Grr~~   83 (445)
                      +.++.++.++...+...++.......+|.|+.+       +++.+..+.+.+.+.+.....++.+++|+++||+ ||||+
T Consensus         6 ~~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~-------~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~   78 (493)
T PRK15462          6 SQPRAIYYVVALQIWEYFSFYGMRALLILYLTN-------QLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMA   78 (493)
T ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHH
Confidence            345677788888888888888888999999864       3466677889999999999999999999999999 99999


Q ss_pred             hHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCcc--chhhHHHHHHHHHhhhhhhhh
Q 013312           84 LTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISER--QRASAFGILLGVLSASFVCGT  161 (445)
Q Consensus        84 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~~g~  161 (445)
                      +.++.++.+++.++++..++.  ...+++...+..+ +.|...+...++++|.+|++  +|.+++++.....++|..++|
T Consensus        79 iliG~il~~lg~lll~~~~~~--~~~~~l~l~li~i-G~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap  155 (493)
T PRK15462         79 VMLGALLMAIGHVVLGASEIH--PSFLYLSLAIIVC-GYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAP  155 (493)
T ss_pred             HHHHHHHHHHHHHHHHHhhcc--hhHHHHHHHHHHH-hcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHH
Confidence            999999999998777654321  2223333334444 44566677788999999875  688999999999999999999


Q ss_pred             hhhhhh----chhhHHHHHHHHHHHHHHHHHHhccCCCCCC-C-CcCCccccchhh---------h--c-ccccCCCCCC
Q 013312          162 LAARFL----STTSAFQAATIVSMLAAAYMRVFLKDDVPND-D-DDDLTRPIITEE---------T--E-GVNQNESNSP  223 (445)
Q Consensus       162 ~l~~~~----~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~-~-~~~~~~~~~~~~---------~--~-~~~~~~~~~~  223 (445)
                      .+.+.+    ||++.|.+.++..++..+.. ...++..++. . ++++.++.....         .  . ........++
T Consensus       156 ~l~g~L~~~~Gw~~~F~iaaigm~l~li~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (493)
T PRK15462        156 IACGYAQEEYSWAMGFGLAAVGMIAGLVIF-LCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVATPALITVLFWKE  234 (493)
T ss_pred             HHHHHHHhhhChHHHHHHHHHHHHHHHHHH-HHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            988874    89999998765443333332 2222111110 0 000000000000         0  0 0000000000


Q ss_pred             cccccccc--cch---hHHHH-HHh--hcchhh---HHHHHHHHHHHhhhhhhHHHHHHHHHhhc-----CCchhhHHHH
Q 013312          224 VKIPVCKK--IPS---IRDLI-CLL--RSSVTL---SQAAVVAFFSGLSEGGMQASFLYFLKAQF-----HFNKNQFADL  287 (445)
Q Consensus       224 ~~~~~~~~--~~~---~~~~~-~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----g~~~~~~g~~  287 (445)
                      ......-.  ...   +.... +..  ..++++   ..+.+...+.+..+....+-+..|.++..     |++- ..+++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~i-p~~~~  313 (493)
T PRK15462        235 WSVYALIVATIIGLGVLAKIYRKAENQKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTV-PTAMF  313 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhcceee-CHHHH
Confidence            00000000  000   00000 000  011222   22333333444444444556666776643     3221 24667


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhcc--hh-----HHHHHHHHHHHHHHHHHhc----C-----C-chhHHHHHHHHhhhh
Q 013312          288 MLIAGLAGTISQLLFMPLLAPILGE--AK-----LLSLGLFAACINMFICSIS----W-----S-AWVPYATTAFSVLVV  350 (445)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~l~~~~~~--~~-----~~~~~~~~~~~~~~~~~~~----~-----~-~~~~~~~~~~g~~~~  350 (445)
                      .+.+.+..++.+ ++..++-.|..+  |.     =...|+++.+++++.+.+.    .     + .|.+....+.++|.-
T Consensus       314 qslNp~~ii~l~-P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~gEl  392 (493)
T PRK15462        314 QSINAFAVMLCG-VFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFAEL  392 (493)
T ss_pred             HhHhHHHHHHHH-HHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHH
Confidence            788888887777 444555444422  11     2567777788887666531    1     2 233333477789999


Q ss_pred             hhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013312          351 FATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALF  398 (445)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~  398 (445)
                      ...|...+.+++..|++.+|+.+|......   ..+++.+.|.+.+..
T Consensus       393 ~~sPvgls~~~~laP~~~~g~~mg~w~l~~---~~~~~~~~g~~~~~~  437 (493)
T PRK15462        393 FIDPVAMSQITRIEIPGVTGVLTGIYMLLS---GAIANYLAGVIADQT  437 (493)
T ss_pred             HHChHHHHHHHHhChHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHh
Confidence            999999999999999999999999885432   234444445554443

>PRK11462 putative transporter; Provisional

Probab=99.90  E-value=5.3e-20  Score=175.86  Aligned_cols=343  Identities=11%  Similarity=0.012  Sum_probs=228.8

Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccc----cCchhHhH-HHHH
Q 013312           15 VTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQ----YGRKAMLT-LPLT   89 (445)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr----~Grr~~l~-~~~~   89 (445)
                      ++.+...+...+....+..+..       +..++++...|.+..+.-+--++..|+.|.++||    +||||.++ ++..
T Consensus        16 ~g~~~~~~~~~~~~~~l~~fyt-------~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i   88 (460)
T PRK11462         16 MGDAASHIIFDNVMLYMMFFYT-------DIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGAL   88 (460)
T ss_pred             cchhhhhHHHHHHHHHHHHHHH-------HhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHH
Confidence            3344444555555555666654       4558888999999999999999999999999995    68876655 5667


Q ss_pred             HHHHHHHHHHhhcCcc---hhHHHHHHHHHhhhccchhHHHHHHHHHhcCCC-ccchhhHHHHHHHHHhhhhhhhhhhhh
Q 013312           90 LSIIPLAILAYRRSIS---FFYAYYALRTLTAMVCEGSINCLALAYVADNIS-ERQRASAFGILLGVLSASFVCGTLAAR  165 (445)
Q Consensus        90 ~~~~~~~~~~~~~~~~---~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~l~~  165 (445)
                      ..+++..++...|+.+   ...++.+.-.+..+ +.........++.+|..+ +|||++..++......+|..+++.+..
T Consensus        89 ~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~~~-~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~  167 (460)
T PRK11462         89 PFGIVCVLAYSTPDLSMNGKMIYAAITYTLLTL-LYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMM  167 (460)
T ss_pred             HHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHH-HHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7788777766665321   13455666666677 667777788899999987 689999999999988888766654432


Q ss_pred             ----hh-------chhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCccccchhhhcccccCCCCCCcccccccccch
Q 013312          166 ----FL-------STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPS  234 (445)
Q Consensus       166 ----~~-------~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (445)
                          .+       +|+....+.+++.+++..++....||.++++++                               +.+
T Consensus       168 plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE~~~~~~~-------------------------------~~~  216 (460)
T PRK11462        168 PLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFFTTKERVEAPPT-------------------------------TTS  216 (460)
T ss_pred             HHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHhcceeccCCCcc-------------------------------CCC
Confidence                12       466666666666555555554445553221110                               112


Q ss_pred             hHHHHHHhhcchhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchh
Q 013312          235 IRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAK  314 (445)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  314 (445)
                      .++.++...+||.++.++...++..............|.+...|. +...+.+.....+..+++. ++.+++.||+++|+
T Consensus       217 ~~~~l~~~~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~-~~~~~~~l~~~~i~~iig~-~l~~~l~~r~gkk~  294 (460)
T PRK11462        217 MREDLRDIWQNDQWRIVGLLTIFNILAVCVRGGAMMYYVTWILGT-PEVFVAFLTTYCVGNLIGS-ALAKPLTDWKCKVT  294 (460)
T ss_pred             HHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhcCC-hHHHHHHHHHHHHHHHHHH-HHHHHHHHHhChHH
Confidence            455556677788777766666666666555555566666655553 3344566677778888877 78899999999998


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCc--hhHH-HHHHHHhhhhhhhhhHHHHHhcccC-------CccchhHHHHHHHHHHHHH
Q 013312          315 LLSLGLFAACINMFICSISWSA--WVPY-ATTAFSVLVVFATPSFRSIVSKQVG-------PNEQGKAQGCISGISSFAN  384 (445)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~-------~~~~g~~~g~~~~~~~~g~  384 (445)
                      ....+.....+....+.+.++.  +... ..++.+++.+...+...++..|..+       .+..|...+..+....+|.
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~  374 (460)
T PRK11462        295 IFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGL  374 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHH
Confidence            8765544433333333332222  1222 2345566666666777777777665       3334666788889999999


Q ss_pred             HHHHHHHHHHHHhh
Q 013312          385 IVSPLIFSPLTALF  398 (445)
Q Consensus       385 ~i~~~~~g~l~~~~  398 (445)
                      .+++.+.|.+.+..
T Consensus       375 alg~~i~g~iL~~~  388 (460)
T PRK11462        375 AFGGALIGWMLAYG  388 (460)
T ss_pred             HHHHHHHHHHHHHc
Confidence            99999999999875

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.89  E-value=2.6e-19  Score=159.93  Aligned_cols=359  Identities=14%  Similarity=0.092  Sum_probs=260.2

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHhhhhccccccccC-----chhHhHH-HHHHHHHHHHHHHhh-----c-------Cc-
Q 013312           44 DECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYG-----RKAMLTL-PLTLSIIPLAILAYR-----R-------SI-  104 (445)
Q Consensus        44 ~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~G-----rr~~l~~-~~~~~~~~~~~~~~~-----~-------~~-  104 (445)
                      .|++++....+.+.+...+... ..+.+|+.||+.+     ||..+++ +....+.+..+..++     .       +. 
T Consensus         8 vEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~   86 (403)
T PF03209_consen    8 VELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFW   86 (403)
T ss_pred             HHhccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccH
Confidence            5668888888998888877765 6999999999999     8877665 555555555554432     2       11 


Q ss_pred             chhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhhhhh----ch-hh--HHHHHH
Q 013312          105 SFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----ST-TS--AFQAAT  177 (445)
Q Consensus       105 ~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~----~w-~~--~f~~~~  177 (445)
                      ...........+.|+ +.+...++..++++|..|||+|+++.++...+.-+|.+++..+.+.+    +. |.  .+...+
T Consensus        87 ~g~~~a~l~F~l~G~-G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~a  165 (403)
T PF03209_consen   87 LGLALAALAFLLYGL-GVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGVA  165 (403)
T ss_pred             HHHHHHHHHHHHHHh-hHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHH
Confidence            012345566778888 77888889999999999999999999999999999999998888764    11 22  222222


Q ss_pred             HHHHHHHHHHHHhccCCCCCCCCcCCccccchhhhcccccCCCCCCcccccccccchhHHHHHHhhcchhhHHHHHHHHH
Q 013312          178 IVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFF  257 (445)
Q Consensus       178 ~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (445)
                      ++.+...++..+ -.|++.++..                         +.+.+++.++++.++.+..+|.....+...++
T Consensus       166 ~i~~~l~~ia~w-g~E~r~~~~~-------------------------~~~~~~~~~f~~a~~~~~~~~~a~~f~~fl~l  219 (403)
T PF03209_consen  166 LIALLLNLIALW-GQEPRRSRRA-------------------------AAAERPRPPFREAWRQVWASPQARRFFVFLFL  219 (403)
T ss_pred             HHHHHHHHHHHH-hcccCCcccc-------------------------cCCCCCCccHHHHHHHHHhCCChhHHHHHHHH
Confidence            222222222222 2222211111                         01122334566767777788888888888888


Q ss_pred             HHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhh-hhhcchhHHHHHHHHHHHHHHHHHhc---
Q 013312          258 SGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLA-PILGEAKLLSLGLFAACINMFICSIS---  333 (445)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~---  333 (445)
                      ..+++..-+..+-+|-.+++|++..+...+....+.+..++. ...+++. +|.++++....++....+++..+..+   
T Consensus       220 ~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~-~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~  298 (403)
T PF03209_consen  220 GTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGM-LLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPL  298 (403)
T ss_pred             HHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhc
Confidence            888888889999999999999999999999999999988877 5556554 47888888888888888777665543   


Q ss_pred             CCchhHHH-HHHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC--CCcccchh
Q 013312          334 WSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKG--APFNFPGF  410 (445)
Q Consensus       334 ~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~--~~~~~~~~  410 (445)
                      .+.+.+.. .+++|++.+.......+...+..++++.|..+|.....+.++..++..+.|.+.|......  .+...++.
T Consensus       299 ~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~  378 (403)
T PF03209_consen  299 GSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGV  378 (403)
T ss_pred             ccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHH
Confidence            35666655 4888999999999999999999999999999999999999999999999999998753221  13334445


Q ss_pred             HHHHHHHHHHHHHHHHHhccC
Q 013312          411 SIMCIGLASMVAFIQSLMMSH  431 (445)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~  431 (445)
                      .|.+-++..++++.....+.+
T Consensus       379 VF~lEa~ll~~a~~ll~~l~~  399 (403)
T PF03209_consen  379 VFALEAVLLLAALVLLGRLDR  399 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHhhh
Confidence            566666666666666655544

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.89  E-value=1.8e-22  Score=168.42  Aligned_cols=360  Identities=12%  Similarity=0.063  Sum_probs=246.1

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHhhhhccccccc-cCchhHhHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHhhhccc
Q 013312           44 DECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQ-YGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCE  122 (445)
Q Consensus        44 ~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~  122 (445)
                      .+.++...+..++.+.|+....+...+.|++.|| +|-|..-++-.....++.++++...-.+.+|.+..+|++.|+ |+
T Consensus        72 ~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGI-Gg  150 (459)
T KOG4686|consen   72 LDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGI-GG  150 (459)
T ss_pred             cccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhheeecc-Cc
Confidence            4446666678899999999999999999999996 688877776677777787777654333339999999999999 54


Q ss_pred             hhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhh----hhhhhhhc-------hh--hHHHHHHHHHHHHHHHHHH
Q 013312          123 GSINCLALAYVADNISERQRASAFGILLGVLSASFVCG----TLAARFLS-------TT--SAFQAATIVSMLAAAYMRV  189 (445)
Q Consensus       123 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g----~~l~~~~~-------w~--~~f~~~~~~~~i~~~~~~~  189 (445)
                      -..-.+-+.+...|++.||.+.++|+.....-+|..+-    |.+....+       ..  .............-+.+..
T Consensus       151 ESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~~~~~~~ghT~LG~~l~~~~~tc~~slical  230 (459)
T KOG4686|consen  151 ESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMGRMFPGVGHTLLGLWLCFEVKTCKQSLICAL  230 (459)
T ss_pred             hhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44446888999999999999999999999888887653    33332211       10  0111111111111111111


Q ss_pred             hccCCCCCCCCcCCccccchhhhcccccCCCCCCcccccccccchhHHHHHHhhcchhhHHHHHHHHHHHhhhhhhHHHH
Q 013312          190 FLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASF  269 (445)
Q Consensus       190 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (445)
                      .+--..+..++      ..+++   ++...+.        .+....++      -.+.+|.+.+..+++......+...-
T Consensus       231 ~lg~~D~rAer------ilh~e---~g~~Ge~--------pkLtdv~~------f~ppfw~~~iicv~yyva~fPFi~lg  287 (459)
T KOG4686|consen  231 SLGLSDDRAER------ILHLE---EGFLGEE--------PKLTDVNT------FYPPFWVLVIICVLYYVAWFPFITLG  287 (459)
T ss_pred             HhhhhhhHHHH------HHhhh---cCcccCC--------cccccccc------cCccHHHHHHHHHHHHHHHHHHhhhh
Confidence            11111111110      00000   0000000        00001111      13557788888888888888899999


Q ss_pred             HHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHH-HHHHHHHHHHHHhcCCchhHHH-HHHHHh
Q 013312          270 LYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLG-LFAACINMFICSISWSAWVPYA-TTAFSV  347 (445)
Q Consensus       270 ~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~g~  347 (445)
                      |.++++++|+|+.+++.+.+.....+.+.+ .+.|.++||.|++.....+ .+....+-..+.+  +.+..+. ..+.|+
T Consensus       288 ~~fF~~rfGlS~~~a~~i~s~vy~Isav~s-pvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F--t~lsPy~~m~~lGL  364 (459)
T KOG4686|consen  288 PMFFQKRFGLSAVSAGNILSTVYGISAVLS-PVFGAISDKYGFNLWWVASACILTLLGHSGLFF--TFLSPYTSMTFLGL  364 (459)
T ss_pred             HHHHHHhhCCChhhccchhhhhhhhhhhhh-hhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh--hhccHHHHHHHHhh
Confidence            999999999999999999988888888877 7779999999987655443 3333444333333  2233333 466788


Q ss_pred             hhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccchhHHHHHHHHHHHHHHHHH
Q 013312          348 LVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSL  427 (445)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (445)
                      ..+......+..++..+|+++.|++.|..+.++++|-.+.|.+.|.+.|.-+++    .+....++..+.+.+......+
T Consensus       365 sysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y----~~le~ffl~~~~~aL~svgil~  440 (459)
T KOG4686|consen  365 SYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSY----DNLEAFFLIIGLMALTSVGILF  440 (459)
T ss_pred             hHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCch----hhHHHHHHHHHHHHHHHHHHHh
Confidence            888888888888999999999999999999999999999999999999875333    3445567777788888888888


Q ss_pred             hccCCCC
Q 013312          428 MMSHTPA  434 (445)
Q Consensus       428 ~~~~~~~  434 (445)
                      .+.+++.
T Consensus       441 ~~N~kq~  447 (459)
T KOG4686|consen  441 YLNKKQS  447 (459)
T ss_pred             heecccc
Confidence            7777654

>PTZ00207 hypothetical protein; Provisional

Probab=99.89  E-value=1.5e-19  Score=173.37  Aligned_cols=376  Identities=12%  Similarity=0.058  Sum_probs=247.4

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHHHHHHHHHHHHHHhh------cCcchhHHHHHHHHHh
Q 013312           44 DECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYR------RSISFFYAYYALRTLT  117 (445)
Q Consensus        44 ~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~r~l~  117 (445)
                      ++++.+..+.+++.++. .....++++.|+++||+|||+++.++.++.++++++++++      ++   ++.+.+.|++.
T Consensus        55 ~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s---~~~l~l~r~l~  130 (591)
T PTZ00207         55 ARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGS---VVRLSVYNGLM  130 (591)
T ss_pred             HHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCc---HHHHHHHHHHH
Confidence            34566667777777763 3445677789999999999999999999999999999997      46   89999999999


Q ss_pred             hhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhh-hhhhhhhh--chhhHHHHHHHHHHHHHHHHHHhccCC
Q 013312          118 AMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVC-GTLAARFL--STTSAFQAATIVSMLAAAYMRVFLKDD  194 (445)
Q Consensus       118 G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~-g~~l~~~~--~w~~~f~~~~~~~~i~~~~~~~~~~e~  194 (445)
                      |+ +.+...+.....+.+++| ++||++.|+.....++|.++ +++..+.+  +|+..|++.+++.++..++...+++++
T Consensus       131 G~-G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~vl~~vv~ll~~~~vr~p  208 (591)
T PTZ00207        131 TL-GCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLMSFALVVGILAIVFMRLP  208 (591)
T ss_pred             HH-HHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhheeCC
Confidence            99 888888888999999997 78999999999999999975 55555554  788889888888888777777777665


Q ss_pred             CCCCC--Cc---CCcccc------------------c--------------------hh----------------h----
Q 013312          195 VPNDD--DD---DLTRPI------------------I--------------------TE----------------E----  211 (445)
Q Consensus       195 ~~~~~--~~---~~~~~~------------------~--------------------~~----------------~----  211 (445)
                      +.+..  ++   ++.++.                  .                    +.                .    
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~v~~~lll  288 (591)
T PTZ00207        209 PFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLPLQGALVAYLKLGSNFKVGFAVTVIVLTV  288 (591)
T ss_pred             cchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence            43211  00   111111                  0                    00                0    


Q ss_pred             -----------hcccccC-C-C--CCCc---------ccc-----ccc-ccchhHHHHHHhhcchhhHHHHHHHHHHHhh
Q 013312          212 -----------TEGVNQN-E-S--NSPV---------KIP-----VCK-KIPSIRDLICLLRSSVTLSQAAVVAFFSGLS  261 (445)
Q Consensus       212 -----------~~~~~~~-~-~--~~~~---------~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (445)
                                 .+..+++ + +  ..+.         .+.     ..+ ..+...+.+....++..+|.+++..++....
T Consensus       289 ~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~t~~q~l~~~d~Wll~~~~~cg~g~  368 (591)
T PTZ00207        289 IFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDVDYIAPQFQETFIEGLKTARLWCLLWSIFCCVGA  368 (591)
T ss_pred             HHHHHhhhHHHhccCCcCCCccccccccccccccccccccccccccccCCCCCCcchHHHHHhchhHHHHHHHHHHhhCc
Confidence                       0000000 0 0  0000         000     000 0011111222234567788888888887777


Q ss_pred             hhhhHHHHHHHHHhhcCCch-hh-HHHHHHHHHHHHHHHHHHHHHHhhh----hhc----chh-HHHHHHHHHHHHHHHH
Q 013312          262 EGGMQASFLYFLKAQFHFNK-NQ-FADLMLIAGLAGTISQLLFMPLLAP----ILG----EAK-LLSLGLFAACINMFIC  330 (445)
Q Consensus       262 ~~~~~~~~~~~~~~~~g~~~-~~-~g~~~~~~~~~~~~~~~~~~~~l~~----~~~----~~~-~~~~~~~~~~~~~~~~  330 (445)
                      ...+...+....+..-|.+. .+ ...+.+..++.+.+|. +..|.+..    |..    +|. .+.+..+ +.++.+++
T Consensus       369 gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GR-l~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll  446 (591)
T PTZ00207        369 HFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGR-LCMSYFEIWSQKRRAEDRVPITIALFIPSV-CIITMLTL  446 (591)
T ss_pred             hheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhH-HHHHHHHHHHHhhccccccchhHHHHHHHH-HHHHHHHH
Confidence            66667777777766326622 32 2226788888888888 77677662    221    122 2333444 55666666


Q ss_pred             HhcCC-chhHHHHHHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHH-HHHHHHHHHhhhcCCCC---c
Q 013312          331 SISWS-AWVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVS-PLIFSPLTALFLSKGAP---F  405 (445)
Q Consensus       331 ~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~-~~~~g~l~~~~~~~~~~---~  405 (445)
                      ++..+ ..+....++.|++.|..++.....++|.+. ++-|+-.-+.....-+|..+- -.++|.++|+-......   .
T Consensus       447 ~~~~p~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~  525 (591)
T PTZ00207        447 FLTLPKAALPLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCT  525 (591)
T ss_pred             HHHCCccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeC
Confidence            65544 333444588899999999999999999999 888998888888887777776 56888899875322211   1


Q ss_pred             ccc--hhHHHHHHHHHHHHHHHHHh
Q 013312          406 NFP--GFSIMCIGLASMVAFIQSLM  428 (445)
Q Consensus       406 ~~~--~~~~~~~~~~~~~~~~~~~~  428 (445)
                      +..  ..++++.++++..+.+....
T Consensus       526 G~~C~~~~~~v~~~~~~~g~~~s~~  550 (591)
T PTZ00207        526 ERVCVVMPLAFLLGLSFLAFITSTY  550 (591)
T ss_pred             CceeeHhHHHHHHHHHHHHHHHHhh
Confidence            111  23567777777777666543

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.88  E-value=8.3e-21  Score=174.64  Aligned_cols=362  Identities=17%  Similarity=0.214  Sum_probs=251.7

Q ss_pred             hHhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCc-hhHh
Q 013312            6 EIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGR-KAML   84 (445)
Q Consensus         6 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Gr-r~~l   84 (445)
                      .+|.+++..+..++..+..+++.|..-.|.++      -|.+.+....|++.++..++.+++++.+|.++.|.++ |+.+
T Consensus        32 ~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~------lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pl  105 (488)
T KOG2325|consen   32 NWRSIYLALLNSFLVAVQFSIYLTSMWPYLQK------LDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPL  105 (488)
T ss_pred             chHhHHHHHHHHHHHhhhheEEEeecchhhhh------cCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCH
Confidence            36788888999999999999999999999876      2234455788999999999999999999999999998 8899


Q ss_pred             HHHHHHHHHHHHHH-HhhcCcc-hhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhh
Q 013312           85 TLPLTLSIIPLAIL-AYRRSIS-FFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTL  162 (445)
Q Consensus        85 ~~~~~~~~~~~~~~-~~~~~~~-~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~  162 (445)
                      +.+.++..+++++. ++..-.+ ..+.++++|++.|+ |.+.. ....+|+++....++|.|+++..+.+..+|.++||.
T Consensus       106 i~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gv-g~~n~-a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~  183 (488)
T KOG2325|consen  106 IVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGV-GVGNF-AVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPT  183 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCc-CcccH-HHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHH
Confidence            99999999999998 4432222 37899999999999 76666 578999999999999999999999999999999998


Q ss_pred             hhhhh------c-----------hhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCccccchhhhcccccCCCCCCcc
Q 013312          163 AARFL------S-----------TTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVK  225 (445)
Q Consensus       163 l~~~~------~-----------w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (445)
                      ++..+      |           +..+-|+.+++.++..++..+.++|.++...+++..++           +++ +...
T Consensus       184 ~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~~~~~~~~-----------~~~-~~~~  251 (488)
T KOG2325|consen  184 IQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGIIDKKKRSV-----------EEE-KSDI  251 (488)
T ss_pred             HHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCccccccccc-----------hhh-ccch
Confidence            87653      1           13566788888888888888899998765544311100           000 0000


Q ss_pred             cccccccchhHHHHHHhhcchhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhH----HHHHHHHHHHHHHHHHH
Q 013312          226 IPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQF----ADLMLIAGLAGTISQLL  301 (445)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~----g~~~~~~~~~~~~~~~~  301 (445)
                      ++.+..  + -       +.+..+..++..+...+......+..+.+....++++.++.    |...+..++..+... +
T Consensus       252 ~~~~~~--~-~-------d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~-l  320 (488)
T KOG2325|consen  252 EKVKKP--K-L-------DWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILL-L  320 (488)
T ss_pred             hhhccC--C-h-------hHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHH-H
Confidence            000000  0 1       11223344555566666666667777777777788877664    344444444444433 2


Q ss_pred             HHHHhh-hhhcchhHHHHHHHHHHHHHHHHHhc----C---------------------------CchhHHH--HHHHHh
Q 013312          302 FMPLLA-PILGEAKLLSLGLFAACINMFICSIS----W---------------------------SAWVPYA--TTAFSV  347 (445)
Q Consensus       302 ~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~----~---------------------------~~~~~~~--~~~~g~  347 (445)
                      ...... .++.+|+.+..+.+.......+....    .                           +.+..+.  .+++|.
T Consensus       321 ~~~f~~l~~i~~r~~~~~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~  400 (488)
T KOG2325|consen  321 LYIFTRLGKIDKRRIILLGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGI  400 (488)
T ss_pred             HHHHHHhhhhccceeeeehHHHHHHhhheeeeeccccccccccccccccCcCcccchhhccCcccChhhheeehhheecc
Confidence            222222 23344555555544433333332210    0                           0111122  244566


Q ss_pred             hhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013312          348 LVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALF  398 (445)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~  398 (445)
                      +.........+.-+|...|+++++.+|+.+.....+..++|.+...++...
T Consensus       401 ~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~  451 (488)
T KOG2325|consen  401 AFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLS  451 (488)
T ss_pred             ccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhc
Confidence            666677788889999999999999999999999999999999999998876

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.77  E-value=8.9e-17  Score=146.59  Aligned_cols=373  Identities=13%  Similarity=0.063  Sum_probs=242.7

Q ss_pred             HhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhcccccccc-CchhHhH
Q 013312            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQY-GRKAMLT   85 (445)
Q Consensus         7 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~-Grr~~l~   85 (445)
                      .|.++.++...+-..++++-....+..|++....++   ++.+..+..-+.++|..-.-+...++|+++||+ |+|+.+.
T Consensus        20 Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~g---Lg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~   96 (498)
T COG3104          20 PRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDG---LGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIV   96 (498)
T ss_pred             CchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccc---CCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHH
Confidence            567888889999999998888888888888755332   667777777778888877778899999999996 9999999


Q ss_pred             HHHHHHHHHHHHHHhhc--CcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCcc--chhhHHHHHHHHHhhhhhhhh
Q 013312           86 LPLTLSIIPLAILAYRR--SISFFYAYYALRTLTAMVCEGSINCLALAYVADNISER--QRASAFGILLGVLSASFVCGT  161 (445)
Q Consensus        86 ~~~~~~~~~~~~~~~~~--~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~~g~  161 (445)
                      .+.++.++|.++.+...  +   ...++++-.+.++ |.|..-|...+++.|.+|++  +|...++++.++.++|..++|
T Consensus        97 lGail~~iGh~~L~~~~~~~---~~gl~i~L~~I~i-G~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p  172 (498)
T COG3104          97 LGAILMAIGHLVLAISSVSG---PGGLYIGLALIIV-GTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAP  172 (498)
T ss_pred             HHHHHHHHHHHHHhcccccc---ccHHHHHHHHHHh-ccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHH
Confidence            99999999999999985  5   7788889999999 89999999999999999864  477789999999999999999


Q ss_pred             hhhhhh----chhhHHHHHHHHHHHHHHHHHHhccCCCCCC----CCcC-Cccccchhh---------h---cccccCCC
Q 013312          162 LAARFL----STTSAFQAATIVSMLAAAYMRVFLKDDVPND----DDDD-LTRPIITEE---------T---EGVNQNES  220 (445)
Q Consensus       162 ~l~~~~----~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~----~~~~-~~~~~~~~~---------~---~~~~~~~~  220 (445)
                      .+.+++    +|+..|...++-..+.++..+ ..+......    +... +........         .   .....+..
T Consensus       173 ~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  251 (498)
T COG3104         173 IITGLLAINYGWHVGFGLAAVGMIIGLVIFL-LGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTF  251 (498)
T ss_pred             HHHHHHHHhhCHHHHHHHHHHHHHHHHHHHH-HccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            888774    899999888876555544443 333211111    1100 000000000         0   00000000


Q ss_pred             CCCc-------c----cccccccchhHHHHHHhhcchhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCc----hhhHH
Q 013312          221 NSPV-------K----IPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFN----KNQFA  285 (445)
Q Consensus       221 ~~~~-------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~----~~~~g  285 (445)
                      ....       .    ....+..+...+    -+|-.....+.+...+++..+....+.+..|..+..+.+    +...+
T Consensus       252 ~~~~~~~~i~~~~~~~~~~~~~~~~~~e----r~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~  327 (498)
T COG3104         252 SGVLLVISILIAIIYFAEAFRSPKVFDE----RRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPA  327 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCccHHH----HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccceecCHH
Confidence            0000       0    000000000011    000011222333333444444444555666665533322    12346


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhcch-------hHHHHHHHHHHHHHHHHHhc-------C---CchhHHH-HHHHHh
Q 013312          286 DLMLIAGLAGTISQLLFMPLLAPILGEA-------KLLSLGLFAACINMFICSIS-------W---SAWVPYA-TTAFSV  347 (445)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~-------~---~~~~~~~-~~~~g~  347 (445)
                      +..+...+..++.+ ++..++..|.+++       .-...++.++..+++++...       .   +.+..+. .++.++
T Consensus       328 ~fQslNp~~Iii~~-pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~  406 (498)
T COG3104         328 WFQSLNPFFIILFS-PILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSF  406 (498)
T ss_pred             HHHhhCHHHHHHHH-HHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHH
Confidence            77788888877777 4445666664332       13445666666666555443       1   2333444 477799


Q ss_pred             hhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHH
Q 013312          348 LVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFS  392 (445)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g  392 (445)
                      +.-...|...+++.+..|+...+..++........++.++..+.+
T Consensus       407 gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~  451 (498)
T COG3104         407 GELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAG  451 (498)
T ss_pred             HHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecc
Confidence            999999999999999999999999999888888888887777666

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.76  E-value=3.3e-16  Score=140.42  Aligned_cols=324  Identities=13%  Similarity=0.001  Sum_probs=225.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHHHHHHHHHHHHHHhhcCc---chhH--HHHHHHHHhhhccch
Q 013312           49 AIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSI---SFFY--AYYALRTLTAMVCEG  123 (445)
Q Consensus        49 s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~---~~~~--~l~~~r~l~G~~~~g  123 (445)
                      +....-|+.-+|.+.+....+++-|+.||+|-|...+++.....+|..+-..+...   +.++  ....+..+.+. +.-
T Consensus        77 s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~-Aq~  155 (480)
T KOG2563|consen   77 SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAA-AQP  155 (480)
T ss_pred             chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHH-hhh
Confidence            33456688889999999999999999999999999999999999999988776543   2244  77788888887 666


Q ss_pred             hHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhhhhh----------chhh--HHHHHHHHHHHHHHHHHHhc
Q 013312          124 SINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----------STTS--AFQAATIVSMLAAAYMRVFL  191 (445)
Q Consensus       124 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~----------~w~~--~f~~~~~~~~i~~~~~~~~~  191 (445)
                      .....-..+..-|++++||..+..+-.++..+|.++|-++...+          .|..  .|+....+..+.+++..+..
T Consensus       156 Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~  235 (480)
T KOG2563|consen  156 FILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVF  235 (480)
T ss_pred             HhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            66655567788999999999999888887777777665554332          3433  45555555555555555555


Q ss_pred             cCCCCCCCCcCCccccchhhhcccccCCCCCCcccccccccchhHHHHHHhhcchhhHHHHHHHHHHHhhhhhhHHHHHH
Q 013312          192 KDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLY  271 (445)
Q Consensus       192 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (445)
                      ++.|+.+....                        .......++.+..+..++++++..+.+........++...+.+..
T Consensus       236 ~~~P~tPps~s------------------------~~~~~~~~f~~si~~~~~n~~F~il~~~ygi~~g~F~~l~~~l~~  291 (480)
T KOG2563|consen  236 TKKPPTPPSAS------------------------QAALQDASFPKSIKSCFKNRQFIILAICYGIGLGLFNSLSTLLNL  291 (480)
T ss_pred             CCCCCCCCchh------------------------HhhhhcCcHHHHHHHHHcCccHHHHHHHHhhhHHHHHHHHHHhhh
Confidence            55443322210                        000011234455555778888877766666666566666555554


Q ss_pred             HHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcc-hhHHHHHHHHHHHHHH-HHHhcC---Cch-hHHHHHHH
Q 013312          272 FLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGE-AKLLSLGLFAACINMF-ICSISW---SAW-VPYATTAF  345 (445)
Q Consensus       272 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~---~~~-~~~~~~~~  345 (445)
                      -+.. -|++....|+......+.+++++ .+.|.+.||.++ |....+......++.. +.....   +.+ ......++
T Consensus       292 ~l~~-sgY~~~~aG~ig~l~iv~Gmlga-~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~  369 (480)
T KOG2563|consen  292 ALCP-SGYEGVFAGYIGALMIVAGMLGA-LASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLL  369 (480)
T ss_pred             cccc-ccCCccccchhHHHHHHHHHHHH-HHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHH
Confidence            4444 47777888999999999999998 888999999876 4444444444444422 222211   223 33335778


Q ss_pred             HhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013312          346 SVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFL  399 (445)
Q Consensus       346 g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~  399 (445)
                      |.+.....|...-+..|..-|..-++..|+.+..+++-+.+-..+.+...+...
T Consensus       370 g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~  423 (480)
T KOG2563|consen  370 GFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLG  423 (480)
T ss_pred             HHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccC
Confidence            888888899888888888877888999999999999888888888888777653

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.73  E-value=3e-19  Score=171.32  Aligned_cols=374  Identities=16%  Similarity=0.218  Sum_probs=2.9

Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHHHHHHHHH
Q 013312           15 VTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIP   94 (445)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~   94 (445)
                      +..++..+..+.....++.+        +..++++..+.|++.+.+-++..+..++..++.+|..|-|.+-.+.++.+++
T Consensus        10 ~~~~~q~~~~g~~~~~ltti--------ErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g   81 (539)
T PF03137_consen   10 LLGLFQMMVSGYVNSSLTTI--------ERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLG   81 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHH--------HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHH
Confidence            33334444444444444444        3677999999999999999999999999999999988888888999999999


Q ss_pred             HHHHHhh----cC-------------------------------------------cchhHHHHHHHHHhhhccchhHHH
Q 013312           95 LAILAYR----RS-------------------------------------------ISFFYAYYALRTLTAMVCEGSINC  127 (445)
Q Consensus        95 ~~~~~~~----~~-------------------------------------------~~~~~~l~~~r~l~G~~~~g~~~~  127 (445)
                      ++++++-    +.                                           ...++.++++.++.|+ |+...++
T Consensus        82 ~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~Gi-G~~pl~t  160 (539)
T PF03137_consen   82 SLLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGI-GATPLYT  160 (539)
T ss_dssp             ----------------------------------------------------------------------SS-S------
T ss_pred             HHHHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhc-cccCCcc
Confidence            8887641    00                                           0016788999999999 9999999


Q ss_pred             HHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhhhhh--------------------------chhhHHHHHHHHHH
Q 013312          128 LALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL--------------------------STTSAFQAATIVSM  181 (445)
Q Consensus       128 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~--------------------------~w~~~f~~~~~~~~  181 (445)
                      ...+|+=|.+++++-+..+|++.....+|.++|-++++.+                          .|...|++.+.+.+
T Consensus       161 LG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~  240 (539)
T PF03137_consen  161 LGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLF  240 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999988887652                          24555667776666


Q ss_pred             HHHHHHHHhccCCCCCCCCcCCccccchhhhcccccCCCCCC-cccccccccchhHHHHHHhhcchhhHHHHHHHHHHHh
Q 013312          182 LAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSP-VKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGL  260 (445)
Q Consensus       182 i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (445)
                      +..+.. +..|+..++.++.++.++..++..++.++++..++ ..+...+..+.+....+.+.+||.+....+.......
T Consensus       241 l~aipl-~~FPk~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~  319 (539)
T PF03137_consen  241 LSAIPL-FFFPKKLPGTSERQEEKESSERKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESF  319 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHH-HcCCccCCCcccccchhhhhhcchhhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence            655554 44554433331111111111101111001100000 0000111112233334456788988888888888888


Q ss_pred             hhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcc--hhHHHHHHHHHHHHHHH---HHhc--
Q 013312          261 SEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGE--AKLLSLGLFAACINMFI---CSIS--  333 (445)
Q Consensus       261 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~---~~~~--  333 (445)
                      ...++.++.|.|++.+++.++.+++++.....+.....+.+++|++.+|++.  |..+....+...++.+.   ..+.  
T Consensus       320 ~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~~~~~~~~~C  399 (539)
T PF03137_consen  320 IVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVILYSPLFFLGC  399 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHeecC
Confidence            9999999999999999999999999988877776666666899999998753  44444444443333322   1110  


Q ss_pred             ----------CC--------------------------------------chhHH-HH-HHHHhhhhhhhhhHHHHHhcc
Q 013312          334 ----------WS--------------------------------------AWVPY-AT-TAFSVLVVFATPSFRSIVSKQ  363 (445)
Q Consensus       334 ----------~~--------------------------------------~~~~~-~~-~~~g~~~~~~~~~~~~~~~~~  363 (445)
                                +.                                      ....+ .. ++..+..+..........-+.
T Consensus       400 ~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~~i~LR~  479 (539)
T PF03137_consen  400 PNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPSTLITLRC  479 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchheeeecc
Confidence                      00                                      00111 11 222334444555556667789


Q ss_pred             cCCccchhHHHHHHHHHH-HHHHHHHHHHHHHHHhh
Q 013312          364 VGPNEQGKAQGCISGISS-FANIVSPLIFSPLTALF  398 (445)
Q Consensus       364 ~~~~~~g~~~g~~~~~~~-~g~~i~~~~~g~l~~~~  398 (445)
                      +|+++|+.+.|+...+.+ +|.+-+|.++|.+.|..
T Consensus       480 V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~t  515 (539)
T PF03137_consen  480 VPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDST  515 (539)
T ss_dssp             ------------------------------------
T ss_pred             CChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhhh
Confidence            999999999999988775 57788999999999963

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=99.68  E-value=3.3e-14  Score=134.32  Aligned_cols=372  Identities=15%  Similarity=0.163  Sum_probs=230.9

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHhhhhcccccccc-----CchhHhHHHHHHHHHHHHHHHhhcCc-chhHHHHHHHHHh
Q 013312           44 DECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQY-----GRKAMLTLPLTLSIIPLAILAYRRSI-SFFYAYYALRTLT  117 (445)
Q Consensus        44 ~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~-----Grr~~l~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~r~l~  117 (445)
                      +++++++.+.....+...++.. .-|++|.++|-+     .||+-++++.++.+++...++..++. .......+.-++.
T Consensus        18 ~~l~ls~~~~~~~~~~~~lPw~-~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~la   96 (433)
T PF03092_consen   18 DDLGLSPAQLQRLSSLASLPWS-IKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLFLA   96 (433)
T ss_pred             HHcCCCHHHHHHHHHHHhCchH-HhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHH
Confidence            4456777777777777777655 478899999976     35555666777776666666654431 1155556666777


Q ss_pred             hhccchhHHHHHHHHHhcCCCc--cchhhHHHHHHHHHhhhhhhhhhhhhhh----chhhHHHHHHHHHHHHHHHHHHhc
Q 013312          118 AMVCEGSINCLALAYVADNISE--RQRASAFGILLGVLSASFVCGTLAARFL----STTSAFQAATIVSMLAAAYMRVFL  191 (445)
Q Consensus       118 G~~~~g~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~g~~l~~~~----~w~~~f~~~~~~~~i~~~~~~~~~  191 (445)
                      .+ +.........+++.|...+  ++|+...+.......+|.+++..++|.+    +++..|.+.+++..+..+...+..
T Consensus        97 ~~-g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~  175 (433)
T PF03092_consen   97 SF-GYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVALFLL  175 (433)
T ss_pred             HH-HHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhh
Confidence            77 7888889999999999853  4477888888888888988888877764    778889888888777766666666


Q ss_pred             cCCCCCCCCcCCccccchhhhcccccCCCCCCccccccc-ccchhHHHHHHhhcchhhHHHHH-HHHHHHhhhhhhHHHH
Q 013312          192 KDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCK-KIPSIRDLICLLRSSVTLSQAAV-VAFFSGLSEGGMQASF  269 (445)
Q Consensus       192 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  269 (445)
                      +| +++.++++..           ...++  + .+.... .++..++.++.+ +.|.++...+ ..++............
T Consensus       176 ~e-~~~~~~~~~~-----------~~~~~--~-~~~~~~~~~~~~~~l~~~~-~~~~i~~~~~~~~~~~~~~~~~~~a~~  239 (433)
T PF03092_consen  176 EE-RKVRPADEVF-----------SFGKE--E-VPCLFGSFREQLSELWRAL-QQRAIWQPILFFIFFFNLPPSISSASS  239 (433)
T ss_pred             hh-ccccccchhh-----------ccccc--c-cchhhHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHhccCCCCccE
Confidence            66 2211111000           00000  0 000000 122334444433 3454554444 2322222222111101


Q ss_pred             HHHHHhhcC---CchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHh----------cCCc
Q 013312          270 LYFLKAQFH---FNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSI----------SWSA  336 (445)
Q Consensus       270 ~~~~~~~~g---~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~  336 (445)
                      -.+..+..+   +|+...+.+..+..++.+++. .+..+...+..-|+++....++..+..+.-..          .++.
T Consensus       240 fy~~~~~~~gp~fs~~f~~~~~~vg~~~~l~g~-~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~  318 (433)
T PF03092_consen  240 FYFQTDALGGPHFSPSFYGTLSIVGSIASLLGI-LLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQ  318 (433)
T ss_pred             EEEEeccccccccCHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCe
Confidence            112233345   899888888877777777776 44455555566777777666655544332111          1122


Q ss_pred             hhHHH-HHHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccchhHHHHH
Q 013312          337 WVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCI  415 (445)
Q Consensus       337 ~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~  415 (445)
                      +.... ..+..+.....+-....+.+|..|+...|+.+++...+.++|..++..++..+.+.++-.+..+.......++.
T Consensus       319 ~f~lgd~~l~~~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~  398 (433)
T PF03092_consen  319 WFALGDTILEEVIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILIC  398 (433)
T ss_pred             EEEEEhHHHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHH
Confidence            22222 25556666666777778899999999999999999999999999999999999888754344443344445666


Q ss_pred             HHHHHHHHHHHHhccCCCC
Q 013312          416 GLASMVAFIQSLMMSHTPA  434 (445)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~  434 (445)
                      .++.++.+.+...++++.+
T Consensus       399 ~~~~ll~l~ll~lLp~~~~  417 (433)
T PF03092_consen  399 SVIQLLPLPLLFLLPPQKR  417 (433)
T ss_pred             HHHHHHHHHHHHHcCCCch
Confidence            6666777777767776544

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PRK10054 putative transporter; Provisional

Probab=99.64  E-value=1.8e-14  Score=135.57  Aligned_cols=151  Identities=11%  Similarity=0.102  Sum_probs=129.5

Q ss_pred             chhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHH
Q 013312          245 SVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAAC  324 (445)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  324 (445)
                      +|.++.+.+..++...+......++|.|+++++|+|+.+.|+..+...+...+.+ +..|+++||+|+|+.+..+..+..
T Consensus         6 ~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~-~~~G~l~Dr~g~k~~~~~~~~~~~   84 (395)
T PRK10054          6 RRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFS-LGFGILADKFDKKRYMLLAITAFA   84 (395)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHhhcCcchhHHHHHHHHH
Confidence            3446667777888888888889999999988899999999999999999999988 778999999999999999998888


Q ss_pred             HHHHHHHhcCCchhHHHH-HHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013312          325 INMFICSISWSAWVPYAT-TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTA  396 (445)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~  396 (445)
                      ++.+.+.+.++.+..+.. .+.+.+.+...+...++..|..|+++|+++.|+.+...++|..++|.+.+.+.+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~  157 (395)
T PRK10054         85 SGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM  157 (395)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888887776655543 445556666678888999999999999999999999999999999999998875

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.62  E-value=6.4e-13  Score=117.40  Aligned_cols=271  Identities=11%  Similarity=0.058  Sum_probs=177.0

Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHHHHHHHH
Q 013312           14 FVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSII   93 (445)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~   93 (445)
                      +....+...+..+..|.+-.+.        ++.+.+..+++.+....+...++..++.|.++||+|||+.-+...+++++
T Consensus        40 l~vY~La~~aDWLQGpY~Y~LY--------~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~  111 (354)
T PF05631_consen   40 LLVYLLAMAADWLQGPYLYALY--------ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSL  111 (354)
T ss_pred             HHHHHHHHHHHHhhcchhHHHH--------HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence            4444555666677777554333        33466678899999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCcchhHHHHHHHHHhhhccchhHHHHHHHHHh-cC----CCccchhhHHHHHH-HHHhhhhhhhhhhhhh-
Q 013312           94 PLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVA-DN----ISERQRASAFGILL-GVLSASFVCGTLAARF-  166 (445)
Q Consensus        94 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~-~~----~~~~~r~~~~~~~~-~~~~~g~~~g~~l~~~-  166 (445)
                      +++ +-..++   ++.++++|++.|+ +......+-.++.. |.    +|++..+.-++... ...++-.+.+.+++.. 
T Consensus       112 scl-~k~~~~---~~~L~~GRvlgGi-aTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l  186 (354)
T PF05631_consen  112 SCL-TKHSSN---YPVLLLGRVLGGI-ATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVL  186 (354)
T ss_pred             HHH-HHhccc---cHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHH
Confidence            885 445577   9999999999999 88888777777664 22    23333344444333 2222223333444433 


Q ss_pred             ---h--chhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCccccchhhhcccccCCCCCCcccccccccchhHHHHHH
Q 013312          167 ---L--STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICL  241 (445)
Q Consensus       167 ---~--~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (445)
                         .  |-..+|.....+..+..++....-+|+..+..++                           .+..+..++..+.
T Consensus       187 ~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~~~~~---------------------------~~~~~~~~~a~~~  239 (354)
T PF05631_consen  187 ADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENYGDTSSS---------------------------SSLSGSFREAWRA  239 (354)
T ss_pred             HHHhCCCCcchHHHHHHHHHHHHHHHHhcccccCCCcccc---------------------------cchHHHHHHHHHH
Confidence               3  3478999988887777777666666654432221                           0111244566667


Q ss_pred             hhcchhhHHHHHHHHHHHhhhhhhHH-HHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHh-hhhhcchhHHHHH
Q 013312          242 LRSSVTLSQAAVVAFFSGLSEGGMQA-SFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLL-APILGEAKLLSLG  319 (445)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~  319 (445)
                      ++++|+++.+.++..+.-...+.+.. |-|..-.+  + +..-.|++++......++|+ .+.+++ .++......+...
T Consensus       240 i~~d~ril~LG~~qslFE~smy~FVflWtPaL~~~--~-~~~P~GlIFssFM~a~MlGS-~lf~~l~s~~~~~e~~l~~v  315 (354)
T PF05631_consen  240 ILSDPRILLLGLIQSLFEGSMYLFVFLWTPALDPD--D-EELPLGLIFSSFMVAMMLGS-SLFSRLLSKSLRPESLLRYV  315 (354)
T ss_pred             HHcCchhHHHHHHHHHHHHHHHHheeeeeceecCC--C-CCCCchHHHHHHHHHHHHHH-HHHHHHHhCCCCHHHHHHHH
Confidence            78888888887777777766666533 44443311  1 22346999999999999999 554444 4454444555544


Q ss_pred             HHHHHHHHH
Q 013312          320 LFAACINMF  328 (445)
Q Consensus       320 ~~~~~~~~~  328 (445)
                      ..+.++++.
T Consensus       316 ~~~aa~~l~  324 (354)
T PF05631_consen  316 FAVAAVSLA  324 (354)
T ss_pred             HHHHHHHHH
Confidence            444444443

>TIGR00889 2A0110 nucleoside transporter

Probab=99.60  E-value=4e-14  Score=134.08  Aligned_cols=188  Identities=12%  Similarity=0.064  Sum_probs=142.9

Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHHHHH
Q 013312           11 SHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTL   90 (445)
Q Consensus        11 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~   90 (445)
                      +.+.+..++............|.+.++.-.......+.+....|...++..+...++.++.|+++||+|||+++..+.++
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~  290 (418)
T TIGR00889       211 AIFFFFSMLLGAPLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVA  290 (418)
T ss_pred             eeHHHHHHHHHhHHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence            34445555555555555566677776521000000123456779999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhc-CcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHH-HHHhhhhhhhhhhhhhh-
Q 013312           91 SIIPLAILAYRR-SISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILL-GVLSASFVCGTLAARFL-  167 (445)
Q Consensus        91 ~~~~~~~~~~~~-~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~g~~l~~~~-  167 (445)
                      .+++..+..... +...++.+++.+++.|+ +.+...+....++.|.+|+++|++++++.+ ...++|..+||.+++.+ 
T Consensus       291 ~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~-~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~  369 (418)
T TIGR00889       291 WALRFGFFAYGDPEYFGYALLFLSMIVYGC-AFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMV  369 (418)
T ss_pred             HHHHHHHHHHcCcchhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            988877777643 21114567788999999 778888888999999999999999999997 67889999999988752 


Q ss_pred             ---------chhhHHHHHHHHHHHHHHHHHHhccCCCCCCC
Q 013312          168 ---------STTSAFQAATIVSMLAAAYMRVFLKDDVPNDD  199 (445)
Q Consensus       168 ---------~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~  199 (445)
                               ||+..|.+.+++.++..++..+++||+.+..+
T Consensus       370 ~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~~~~  410 (418)
T TIGR00889       370 EKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHNAIK  410 (418)
T ss_pred             HHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcccCCC
Confidence                     48999999988888888888888888754433

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.60  E-value=3.5e-14  Score=136.62  Aligned_cols=347  Identities=16%  Similarity=0.203  Sum_probs=249.1

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHHHHHHHHHHHHHHhh------------------cCc-
Q 013312           44 DECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYR------------------RSI-  104 (445)
Q Consensus        44 ~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~------------------~~~-  104 (445)
                      ..++++..+.|++.+.+-++..+...+..+..-|..|-|.+-++.++.+++.+++++-                  .+. 
T Consensus       125 rRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~  204 (735)
T KOG3626|consen  125 RRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPS  204 (735)
T ss_pred             hhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCc
Confidence            5667778889999999999999999999999999999999999999999999988752                  000 


Q ss_pred             --------------------------c----hhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHh
Q 013312          105 --------------------------S----FFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLS  154 (445)
Q Consensus       105 --------------------------~----~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~  154 (445)
                                                .    .+..++++.++.|+ |....++...+|+=|...+++-+..+|++.....
T Consensus       205 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GI-G~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~  283 (735)
T KOG3626|consen  205 SSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGI-GATPIFTLGISYIDDNVKKKNSPLYLGILYSMAI  283 (735)
T ss_pred             cccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhc-CCCCCccCCCccccccccccCCcHHHHHHHHHHH
Confidence                                      0    14478889999999 8899999999999999999999999999999999


Q ss_pred             hhhhhhhhhhhhh-----------------------chhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCccccchhh
Q 013312          155 ASFVCGTLAARFL-----------------------STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEE  211 (445)
Q Consensus       155 ~g~~~g~~l~~~~-----------------------~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~  211 (445)
                      +|.++|-++++++                       .|+..|++.+.+.++..+.. +++|...++..++.+.+     .
T Consensus       284 lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~-f~fPk~lp~~~~~~~~~-----~  357 (735)
T KOG3626|consen  284 LGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPL-FFFPKELPKSQKRKRAR-----D  357 (735)
T ss_pred             hhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHH-HhCcccCccccccchhh-----h
Confidence            9999998888762                       35566888888877776665 55665544333220000     0


Q ss_pred             hcccccCCCCCCcccccccccchhHHHHHHhhcchhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHH
Q 013312          212 TEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIA  291 (445)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~  291 (445)
                      .+..+.+.+..+......+..+.+....+.+.+||.+....+...+......++.+++|-|++.++|.++..+..+....
T Consensus       358 ~~~~k~~~~~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i  437 (735)
T KOG3626|consen  358 LHVLKTESGGAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSI  437 (735)
T ss_pred             hcccccccccccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhh
Confidence            00000000000001111111123333445567899999999999999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHHHHHHhhhhhcc--hhHHHHHHHHHHHHHHHH---Hh----------------------c-C---------
Q 013312          292 GLAGTISQLLFMPLLAPILGE--AKLLSLGLFAACINMFIC---SI----------------------S-W---------  334 (445)
Q Consensus       292 ~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~---~~----------------------~-~---------  334 (445)
                      ++.....+.+++|++.+|++.  |......++...+.++.+   .+                      . .         
T Consensus       438 ~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~l~~~~~~~~igC~~~~~aG~~~~y~~~~~~~~~~~~~s~Cn~~  517 (735)
T KOG3626|consen  438 GVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLSLLFYSLLFFIGCESSPVAGVTNSYEGSPAFTSHENPFSSCNSD  517 (735)
T ss_pred             hhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHHHHHHHHHHEecCCCCcccceecCCCCCCccccCCCchhhhhcC
Confidence            888888787999999998753  555544444444443331   11                      0 0         


Q ss_pred             ---------------------------------C------------c------------------h----hHHHHHHH-H
Q 013312          335 ---------------------------------S------------A------------------W----VPYATTAF-S  346 (445)
Q Consensus       335 ---------------------------------~------------~------------------~----~~~~~~~~-g  346 (445)
                                                       +            .                  .    .+++..++ .
T Consensus       518 C~C~~~~~~PVCg~~G~tY~SpChAGC~~~~~~~~~~~~ytnCsCv~~~~~~~~~a~~G~C~~~c~~~~~~Fl~~~~~~s  597 (735)
T KOG3626|consen  518 CSCDTSEYEPVCGENGITYFSPCHAGCTESSGTSDGNTIYTNCSCVPTNKNGNGSAKKGYCPNDCCRQFLIFLALFAIGS  597 (735)
T ss_pred             CCCCCcCcCcccCCCCCEEeChhhhCCcccccCCCCceeeccccccccccCCCceeecCCCCCCcchhhHHHHHHHHHHH
Confidence                                             0            0                  0    01111122 2


Q ss_pred             hhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHH-HHHHHHHHHHHHHHHh
Q 013312          347 VLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISS-FANIVSPLIFSPLTAL  397 (445)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~-~g~~i~~~~~g~l~~~  397 (445)
                      +..+...+..+.++.+.+|+|+|.-++|+..++.+ +|.+-+|.++|++.|.
T Consensus       598 f~~~~~~~p~~~i~LR~V~~e~ks~AlG~~~~~irllg~IPsPIifG~~ID~  649 (735)
T KOG3626|consen  598 FIGALGAVPGMLIVLRCVPPEEKSFALGFQWMLIRLLGFIPSPIIFGAVIDT  649 (735)
T ss_pred             HHHHhccCcceEEEEEccCchhchhhhHHHHHHHHHHhcCCchHhhhhhHhh
Confidence            33344456666777889999999999999988876 5778899999999996

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.59  E-value=9.3e-14  Score=133.47  Aligned_cols=154  Identities=15%  Similarity=0.105  Sum_probs=134.2

Q ss_pred             cchhhHHHHHHHHHHHhhhhhhHHHHHHHHHhh--cCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhh-hcchhHHHHHH
Q 013312          244 SSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQ--FHFNKNQFADLMLIAGLAGTISQLLFMPLLAPI-LGEAKLLSLGL  320 (445)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~  320 (445)
                      +++.++.++...++..+++++...++|.|+++.  +|+++.+.+...+.......++. +.+|+++|| +|||+.+..+.
T Consensus         8 ~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~-~~~G~laDr~~G~~~~l~~~~   86 (475)
T TIGR00924         8 HPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLT-SVGWWFGDRVWGTKKTMVLGG   86 (475)
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHH-hhHHHHHHhhcchHHHHHHHH
Confidence            345566677777888889999999999999887  89999999999999999999988 888999999 89999999999


Q ss_pred             HHHHHHHHHHHhcCCchhHHH-HHHHHhhhhhhhhhHHHHHhcccCCcc---chhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013312          321 FAACINMFICSISWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNE---QGKAQGCISGISSFANIVSPLIFSPLTA  396 (445)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~---~g~~~g~~~~~~~~g~~i~~~~~g~l~~  396 (445)
                      .+..++.+.+.+.++.+.+.. ..+.+++.+...|...+++.+.+|+++   |+++.++.+...++|..+||.+.|++.+
T Consensus        87 ~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~  166 (475)
T TIGR00924        87 IVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAE  166 (475)
T ss_pred             HHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHH
Confidence            999999988888776655544 366788888889999999999998764   8889999999999999999999999988


Q ss_pred             hh
Q 013312          397 LF  398 (445)
Q Consensus       397 ~~  398 (445)
                      +.
T Consensus       167 ~~  168 (475)
T TIGR00924       167 NY  168 (475)
T ss_pred             hc
Confidence            65

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.59  E-value=5.7e-15  Score=117.59  Aligned_cols=132  Identities=22%  Similarity=0.317  Sum_probs=116.5

Q ss_pred             HHHHHHHHHhhhhccccccccCchhHhHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCC
Q 013312           58 AIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNI  137 (445)
Q Consensus        58 s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~  137 (445)
                      +.+.++..+++++.|++.||+|||+.+..+.....++.+.....++   ++.+.+.+++.|+ +.+...+...+++.|..
T Consensus         5 ~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~   80 (141)
T TIGR00880         5 AGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSN---ITVLIIARFLQGF-GAAFALVAGAALIADIY   80 (141)
T ss_pred             EeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHH-HHHHHHHhHHHHHHHHC
Confidence            4457788899999999999999999999999999999998888888   8999999999999 88888899999999999


Q ss_pred             CccchhhHHHHHHHHHhhhhhhhhhhhhhh----chhhHHHHHHHHHHHHHHHHHHhccC
Q 013312          138 SERQRASAFGILLGVLSASFVCGTLAARFL----STTSAFQAATIVSMLAAAYMRVFLKD  193 (445)
Q Consensus       138 ~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~----~w~~~f~~~~~~~~i~~~~~~~~~~e  193 (445)
                      |+++|++..+..+....+|..++|.+++.+    +|++.|++.+.+.++..+...+..||
T Consensus        81 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (141)
T TIGR00880        81 PPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE  140 (141)
T ss_pred             ChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            999999999999999999999999888764    78999998888877776666666665

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.59  E-value=1.4e-13  Score=129.75  Aligned_cols=146  Identities=12%  Similarity=0.096  Sum_probs=129.6

Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHH
Q 013312          250 QAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFI  329 (445)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  329 (445)
                      .++...++...+.+....++|.|+++++|+|+.+.|+..+...+...+.+ ++.|+++||+++|+.+..+..+..++.+.
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~-~~~G~l~dr~g~k~~l~~~~~~~~~~~~~   92 (400)
T PRK11646         14 FLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLG-IFGGAIADRFGAKPMIVTGMLMRAAGFAT   92 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHH-hhhhHHHHHhCchHHHHHHHHHHHHHHHH
Confidence            35667778888888889999999988899999999999999999988887 77799999999999999999999999998


Q ss_pred             HHhcCCchhHHHH-HHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013312          330 CSISWSAWVPYAT-TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTA  396 (445)
Q Consensus       330 ~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~  396 (445)
                      +.+.++.|.++.. .+.+++.+...|...+++.|.+|+|+|+++.|+.+...++|..+||.+.|.+.+
T Consensus        93 ~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~  160 (400)
T PRK11646         93 MAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQ  160 (400)
T ss_pred             HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888877766554 666888888888999999999999999999999999999999999999999984

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=99.59  E-value=7.5e-12  Score=113.83  Aligned_cols=324  Identities=13%  Similarity=0.058  Sum_probs=211.9

Q ss_pred             HHHHHHHHHhhhhccccccccCchhHhHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCC
Q 013312           58 AIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNI  137 (445)
Q Consensus        58 s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~  137 (445)
                      -...-.++...++...+.|..+.|++++.+.+...+...+..+.++   ...+.+..+..|+ +.+.. .+..+++-...
T Consensus        48 Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~s---v~~mq~~q~~yg~-~~a~e-vay~sYiys~v  122 (412)
T PF01770_consen   48 PVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTS---VLAMQLMQFFYGL-ATAAE-VAYYSYIYSVV  122 (412)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCc---HHHHHHHHHHHHH-HHHHH-HHHHHHheeec
Confidence            3345566777788899999999999999999999999999999999   9999999999999 65554 68889999999


Q ss_pred             CccchhhHHHHHHHHHhhhhhhhhhhhhhh------chhhHHHHHHHHHHHHHHHHHHhccCCCCCC---CCcCCccccc
Q 013312          138 SERQRASAFGILLGVLSASFVCGTLAARFL------STTSAFQAATIVSMLAAAYMRVFLKDDVPND---DDDDLTRPII  208 (445)
Q Consensus       138 ~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~------~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~---~~~~~~~~~~  208 (445)
                      |+++-.++.+...++..+|..+|.++|..+      +.+...++......++.++ .+++|..++..   ++..+.+...
T Consensus       123 ~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~-~~fLP~~~~S~~f~r~~~~~~~~~  201 (412)
T PF01770_consen  123 DKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLI-ALFLPMPKRSLFFHRKPPAEQDAN  201 (412)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHHcCCCCcccceeccCccccccc
Confidence            999999999999999999999998888764      4456666665544444444 36677755421   1111100000


Q ss_pred             hhhhcc-cccCC----CCCCcccccccccchhHHHHH---HhhcchhhHHHHHHHHHHHhhhhhhHHHHHHHHHhh--cC
Q 013312          209 TEETEG-VNQNE----SNSPVKIPVCKKIPSIRDLIC---LLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQ--FH  278 (445)
Q Consensus       209 ~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g  278 (445)
                      +...+. ++.++    ..++...........++..++   ...++|.++...+-..+...+.....++.....++.  -+
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSlWWa~atcgy~qv~nYvQ~LW~~v~~~~  281 (412)
T PF01770_consen  202 ESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSLWWAFATCGYYQVINYVQSLWDTVPPSD  281 (412)
T ss_pred             cccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCCC
Confidence            000000 00000    000111111111122233332   233566665555545555555555566666655553  13


Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchh--HHHHHHHHHHHHHHHHHhcCCchhHHHH-HHHHhhhhhhhhh
Q 013312          279 FNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAK--LLSLGLFAACINMFICSISWSAWVPYAT-TAFSVLVVFATPS  355 (445)
Q Consensus       279 ~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~  355 (445)
                      -+....|..-+...+.+.++. +..|++..++.+..  .+.....+.+..++++...++.|..+.. ++++.......+.
T Consensus       282 ~~~vYNG~VeA~~tllgA~~a-l~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~yIif~~~y~fliTi  360 (412)
T PF01770_consen  282 NESVYNGAVEAASTLLGAIAA-LLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTGNIWVCYAGYIIFRSLYMFLITI  360 (412)
T ss_pred             CCcccchHHHHHHHHHHHHHH-HHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            333445777888888888877 67788755555533  3334445556667777788888888886 6667777777788


Q ss_pred             HHHHHhcccCCccchhHHHHHHHHHHHHHHHHH
Q 013312          356 FRSIVSKQVGPNEQGKAQGCISGISSFANIVSP  388 (445)
Q Consensus       356 ~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~  388 (445)
                      ...-++.....|.-|-++|+++.+..+-+.+-.
T Consensus       361 A~~qIA~~l~~e~yaLVFGiNtf~Al~LQtilT  393 (412)
T PF01770_consen  361 ASFQIAKNLSEERYALVFGINTFVALVLQTILT  393 (412)
T ss_pred             HHHHHHHhccccceeeeeeeHHHHHHHHHHheE
Confidence            888888888888889999988887766555443

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.57  E-value=2.9e-13  Score=129.24  Aligned_cols=148  Identities=11%  Similarity=0.128  Sum_probs=125.2

Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHH
Q 013312          249 SQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMF  328 (445)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  328 (445)
                      ...++..++..+....+....|.+.++ +|+|+.+.|++.+...++..+++ +..|++.||+|+|+.+..+.++..++.+
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~-~~~G~l~dr~g~r~~~~~~~~~~~~~~~  103 (434)
T PRK11663         26 ITMYLGYALFYFTRKSFNAAMPEMLAD-LGLSRSDIGLLATLFYITYGVSK-FVSGIVSDRSNARYFMGIGLIATGIINI  103 (434)
T ss_pred             HHHHHHHHHHHHhhhhHHHhhHHHHHh-cCCCHHHHHHHHHHHHHHHHHHH-hhhhHHHhhcCCchhHHHHHHHHHHHHH
Confidence            334444444444445667778888876 89999999999999999999998 7889999999999999999999999998


Q ss_pred             HHHhcCCchhHHHH-HHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013312          329 ICSISWSAWVPYAT-TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALF  398 (445)
Q Consensus       329 ~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~  398 (445)
                      ...+.++.+.+... ++.+++.+...+...+++.|.+|+++|++++|+.+....+|..++|.+.+.+.+..
T Consensus       104 ~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~  174 (434)
T PRK11663        104 LFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHY  174 (434)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            88888877766554 56678888888899999999999999999999999999999999999999998765

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.57  E-value=1.7e-13  Score=127.35  Aligned_cols=165  Identities=19%  Similarity=0.319  Sum_probs=131.6

Q ss_pred             HHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHH
Q 013312          252 AVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICS  331 (445)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  331 (445)
                      ++..++...........+|.++.+++|.|+.+.+++.+...+...++. +..|++.||+|||+.+..+..+..++.+...
T Consensus         2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~   80 (352)
T PF07690_consen    2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFS-PFAGYLSDRFGRRRVLIIGLLLFALGSLLLA   80 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHH-HHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCCeeeEeehhhhhhhHHHHhh
Confidence            345556666666677777856667799999999999999999999998 7779999999999999999999999855555


Q ss_pred             hcCCchhHHHH-HHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccchh
Q 013312          332 ISWSAWVPYAT-TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGF  410 (445)
Q Consensus       332 ~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~  410 (445)
                      +.++.+.++.. ++.|++.+...+...+++.|.+|+++|+++++..+....+|..++|.+.+.+.+..       ++.. 
T Consensus        81 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~-------~~~~-  152 (352)
T PF07690_consen   81 FASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYF-------GWRW-  152 (352)
T ss_dssp             HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHC-------HHCC-
T ss_pred             hhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcc-------cccc-
Confidence            55666644444 77899999999999999999999999999999999999999999999999998654       2222 


Q ss_pred             HHHHHHHHHHHHHHH
Q 013312          411 SIMCIGLASMVAFIQ  425 (445)
Q Consensus       411 ~~~~~~~~~~~~~~~  425 (445)
                      .+.+.+++.++..+.
T Consensus       153 ~~~~~~~~~~~~~il  167 (352)
T PF07690_consen  153 AFLISAILSLIAAIL  167 (352)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             ccccccchhhhhhhh
Confidence            355566666655553

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.56  E-value=2.7e-13  Score=127.68  Aligned_cols=169  Identities=12%  Similarity=0.087  Sum_probs=132.8

Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHH
Q 013312          251 AAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFIC  330 (445)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  330 (445)
                      .....+.............|.+.++ +|.|+.+.++..+...++..++. +..|++.||+|||+.+..+..+..++.+..
T Consensus        10 ~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~g~~~~~~~~~~~~~~-~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~   87 (385)
T TIGR00710        10 LGCLSILGPLGIDMYLPAFPEIAAD-LSTPASIVQMTLTLYLLGFAAGQ-LLWGPLSDRYGRRPVLLLGLFIFALSSLGL   87 (385)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHH-HhhhhHHHhcCChHHHHHHHHHHHHHHHHH
Confidence            3333444444555555666766655 89999999999999999999998 788999999999999999999999988888


Q ss_pred             HhcCCchhHHHH-HHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccch
Q 013312          331 SISWSAWVPYAT-TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPG  409 (445)
Q Consensus       331 ~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~  409 (445)
                      .+.++.+..... .+.+++.+...+...+++.|.+|+++|+++.|..+....++..++|.+.+.+.++.       ++..
T Consensus        88 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-------~~~~  160 (385)
T TIGR00710        88 ALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWL-------SWHA  160 (385)
T ss_pred             HHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------CHHH
Confidence            888877766654 67788899899999999999999999999999999999999999999999988864       3333


Q ss_pred             hHHHHHHHHHHHHHHHHHhc
Q 013312          410 FSIMCIGLASMVAFIQSLMM  429 (445)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~  429 (445)
                       .+.+.+++.++.....+..
T Consensus       161 -~~~~~~~~~~~~~~~~~~~  179 (385)
T TIGR00710       161 -IFAFLSLAGILLSALIFFI  179 (385)
T ss_pred             -HHHHHHHHHHHHHHHHHHh
Confidence             2444444444444444433

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.56  E-value=2.4e-13  Score=126.94  Aligned_cols=169  Identities=13%  Similarity=0.111  Sum_probs=135.5

Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHH
Q 013312          251 AAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFIC  330 (445)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  330 (445)
                      +....++..+........+|.|..+ .+.++.+.++..+...++..++. +..|+++||+|||+.+..+..+..++....
T Consensus         4 l~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~~~~~~~~~i~~-~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~   81 (365)
T TIGR00900         4 LFAAQLISLIGTAITQVALPLYVLA-GTGSASVLSLAALAGMLPYVVLS-PIAGALADRYDRKKVMIGADLIRAVLVAVL   81 (365)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHHHHHH-HhhhHHHHhhchhHHHHHHHHHHHHHHHHH
Confidence            4556677777777788888998887 69999999999999999999998 777999999999999999888877777666


Q ss_pred             HhcC-----CchhHHHH-HHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 013312          331 SISW-----SAWVPYAT-TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAP  404 (445)
Q Consensus       331 ~~~~-----~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~  404 (445)
                      .+..     +.+.++.. .+.+++.+...+...+++.|..|+++|+++.|..+....+|..++|.+.+.+.+..      
T Consensus        82 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~------  155 (365)
T TIGR00900        82 PFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATL------  155 (365)
T ss_pred             HHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh------
Confidence            6655     66655554 66788888899999999999999999999999999999999999999999998875      


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHhc
Q 013312          405 FNFPGFSIMCIGLASMVAFIQSLMM  429 (445)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~~~~~~~  429 (445)
                       ++.. .+.+.++..+++.......
T Consensus       156 -g~~~-~~~~~~~~~~~~~~~~~~~  178 (365)
T TIGR00900       156 -GIKW-AIWVDAVGFAISALLIVSV  178 (365)
T ss_pred             -hHHH-HHHHHHHHHHHHHHHHHhc
Confidence             3333 2444444444444444433

>PRK03545 putative arabinose transporter; Provisional

Probab=99.55  E-value=4.7e-13  Score=126.11  Aligned_cols=153  Identities=11%  Similarity=0.143  Sum_probs=124.3

Q ss_pred             HHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHhcCCchhHHHH-HH
Q 013312          266 QASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYAT-TA  344 (445)
Q Consensus       266 ~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  344 (445)
                      ...+|.+.++ +|.|+.+.|+..+...++..+++ +..|++.||+|||+++..+..+..++.+...+.++.+.+... .+
T Consensus        29 ~~~~~~l~~~-~~~s~~~~g~~~~~~~~~~~~~~-~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~  106 (390)
T PRK03545         29 VGLLSDIAQS-FHMQTAQVGLMLTIYAWVVALMS-LPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIG  106 (390)
T ss_pred             HcchHHHHhH-cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            3345665554 89999999999999999988888 666899999999999999999999999888888888877665 66


Q ss_pred             HHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccchhHHHHHHHHHHHHHH
Q 013312          345 FSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFI  424 (445)
Q Consensus       345 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (445)
                      .|++.+...+...+++.|..|+|+|++++|+......+|..++|.+.+.+.++.       ++.. .+.+.+++.++...
T Consensus       107 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~-------gw~~-~f~~~~~~~~l~~~  178 (390)
T PRK03545        107 IAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYL-------GWRT-TFLAIGGGALITLL  178 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHh-------cHHH-HHHHHHHHHHHHHH
Confidence            788888888999999999999999999999999999999999999999988765       3333 34555554444444


Q ss_pred             HHHh
Q 013312          425 QSLM  428 (445)
Q Consensus       425 ~~~~  428 (445)
                      ....
T Consensus       179 ~~~~  182 (390)
T PRK03545        179 LLIK  182 (390)
T ss_pred             HHHH
Confidence            4333

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.55  E-value=3.4e-13  Score=130.77  Aligned_cols=167  Identities=14%  Similarity=0.100  Sum_probs=115.6

Q ss_pred             HHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHHHHHHHHHHHH-H
Q 013312           20 WGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAI-L   98 (445)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~-~   98 (445)
                      ...........+|.+.++.       .+.+....++..+...++..++.+..|+++||+|||+++..+.++..++... .
T Consensus       262 ~~~~~~~~~~~~p~~l~~~-------~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~  334 (490)
T PRK10642        262 TNVTYYMLLTYMPSYLSHN-------LHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAF  334 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            3344555566778887542       2333345566777888999999999999999999999988877654433322 2


Q ss_pred             --HhhcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhhhhh-----chhh
Q 013312           99 --AYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL-----STTS  171 (445)
Q Consensus        99 --~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~-----~w~~  171 (445)
                        ..+++   ...+++.+++.|+ +.+...+....++.|.+|++.|+++++.......++..++|.+.+.+     +|+.
T Consensus       335 ~~~~~~~---~~~~~~~~~~~g~-~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~  410 (490)
T PRK10642        335 ILINSNV---IGLIFAGLLMLAV-ILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMM  410 (490)
T ss_pred             HHHhCCC---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchH
Confidence              22344   6777888999888 66666667788889999999999999975444445556777766653     4677


Q ss_pred             HHHHHHHHHHHHHHHHHHhccCCCCCC
Q 013312          172 AFQAATIVSMLAAAYMRVFLKDDVPND  198 (445)
Q Consensus       172 ~f~~~~~~~~i~~~~~~~~~~e~~~~~  198 (445)
                      +++...+.+++..+.. +++||++++.
T Consensus       411 ~~~~~~~~~~i~~~~~-~~~pes~~~~  436 (490)
T PRK10642        411 PAYYLMVVAVIGLITG-VTMKETANRP  436 (490)
T ss_pred             HHHHHHHHHHHHHHHH-HHhccccCCC
Confidence            7666666655554443 5679987753

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.55  E-value=5.2e-13  Score=126.51  Aligned_cols=175  Identities=11%  Similarity=0.147  Sum_probs=135.1

Q ss_pred             cchhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhh-cchhHHHHHHHH
Q 013312          244 SSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPIL-GEAKLLSLGLFA  322 (445)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~  322 (445)
                      +++.++..+...+...+.++++..++|.|+++.+|+++.+.+.+.........++. +.+|+++||+ |||+.+..+.++
T Consensus         7 ~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~-ligG~LaDRilGrrr~iliG~il   85 (493)
T PRK15462          7 QPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTP-ILGGFLADKVLGNRMAVMLGALL   85 (493)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHccCcHHHHHHHHHH
Confidence            34556667777778888899999999999998899999999999998888888877 8889999999 999999999999


Q ss_pred             HHHHHHHHHhcCC-chhHHH-HHHHHhhhhhhhhhHHHHHhcccCCc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013312          323 ACINMFICSISWS-AWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPN--EQGKAQGCISGISSFANIVSPLIFSPLTALF  398 (445)
Q Consensus       323 ~~~~~~~~~~~~~-~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~--~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~  398 (445)
                      ..++.+++....+ ...... ..+..++.+...+...+++.|.+|++  +|.+++++.....++|+.++|.+.|++.+..
T Consensus        86 ~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~  165 (493)
T PRK15462         86 MAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEY  165 (493)
T ss_pred             HHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            9888776654332 222222 23445666667787888999999876  6999999999999999999999999998865


Q ss_pred             hcCCCCcccchhHHHHHHHHHHHHHHHHH
Q 013312          399 LSKGAPFNFPGFSIMCIGLASMVAFIQSL  427 (445)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (445)
                             ++... |.+.++..+++++...
T Consensus       166 -------Gw~~~-F~iaaigm~l~li~~~  186 (493)
T PRK15462        166 -------SWAMG-FGLAAVGMIAGLVIFL  186 (493)
T ss_pred             -------ChHHH-HHHHHHHHHHHHHHHH
Confidence                   33333 4444444444444443

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.55  E-value=8.8e-13  Score=124.13  Aligned_cols=153  Identities=11%  Similarity=0.065  Sum_probs=126.8

Q ss_pred             hhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHhcCCchhHHHH-
Q 013312          264 GMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYAT-  342 (445)
Q Consensus       264 ~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  342 (445)
                      .....+|.+.++ +|+++.+.++..+...++..+++ +..|++.||+|||+.+..+..+..++.+...+.++.+.++.. 
T Consensus        38 ~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~-~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r  115 (394)
T PRK10213         38 LPVSLLTPMAQD-LGISEGVAGQSVTVTAFVAMFAS-LFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGR  115 (394)
T ss_pred             HHHhhHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHH
Confidence            444567777665 89999999999999999999988 777899999999999999999999998888888888777775 


Q ss_pred             HHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccchhHHHHHHHHHHHH
Q 013312          343 TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVA  422 (445)
Q Consensus       343 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (445)
                      .+.|++.+...+...+++.|.+|+++|+++.++.....+++..++|.+.+.+.+.+       ++... +.+.+.+.++.
T Consensus       116 ~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~-------gw~~~-f~~~~~l~~~~  187 (394)
T PRK10213        116 ACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELI-------GWRNV-FNAAAVMGVLC  187 (394)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------CHHHH-HHHHHHHHHHH
Confidence            77899999999999999999999999999999999999999999999999998865       33333 44444444444


Q ss_pred             HHHH
Q 013312          423 FIQS  426 (445)
Q Consensus       423 ~~~~  426 (445)
                      ....
T Consensus       188 ~l~~  191 (394)
T PRK10213        188 IFWI  191 (394)
T ss_pred             HHHH
Confidence            4333

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.54  E-value=3.3e-13  Score=128.34  Aligned_cols=182  Identities=13%  Similarity=0.068  Sum_probs=138.4

Q ss_pred             HHhhcchhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHH
Q 013312          240 CLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLG  319 (445)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  319 (445)
                      +.++++|.++..++..++..+.........|.+.++ .+.++.+.|+..+...+...+++ +..|+++||++||+.+..+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~~~~~l~~~~~~-~~~G~l~dr~g~~~~l~~~   88 (417)
T PRK10489         11 SLLKTHPAFRAVFIARFISIFGLGLLGVAVPVQIQM-MTGSTLQVGLSVTLTGGAMFIGL-MVGGVLADRYDRKKLILLA   88 (417)
T ss_pred             HHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHH-HhhHHHhhhcCCceEEEeh
Confidence            445667778777777788888877778888888877 57899999999999999999998 7789999999999988877


Q ss_pred             HHHHHHHHHHHHh-----cCCchhHHHH-HHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHH
Q 013312          320 LFAACINMFICSI-----SWSAWVPYAT-TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSP  393 (445)
Q Consensus       320 ~~~~~~~~~~~~~-----~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~  393 (445)
                      ..+.+++...+..     .++.+.+... ++.+++.+...+...+.+.|.+|+++|+++.++.+...++|..+||.+.|.
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~  168 (417)
T PRK10489         89 RGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGL  168 (417)
T ss_pred             HHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHH
Confidence            7766665544332     2334444433 556777777788889999999999999999999999999999999999999


Q ss_pred             HHHhhhcCCCCcccchhHHHHHHHHHHHHHHHHHhccC
Q 013312          394 LTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMSH  431 (445)
Q Consensus       394 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (445)
                      +.+..       ++.. .+.+.++..+++.+..+..++
T Consensus       169 l~~~~-------~~~~-~~~~~~~~~~~~~~~~~~l~~  198 (417)
T PRK10489        169 LIAAG-------GVAW-NYGLAAAGTFITLLPLLRLPA  198 (417)
T ss_pred             HHHHH-------hhHH-HHHHHHHHHHHHHHHHHhCCC
Confidence            98865       2222 244444444454444444443

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.54  E-value=1e-12  Score=118.93  Aligned_cols=175  Identities=15%  Similarity=0.117  Sum_probs=155.1

Q ss_pred             hhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHH
Q 013312          247 TLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACIN  326 (445)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  326 (445)
                      .++.+.+..|......+.....+|...+| +|.|..++|...+.+..+..++. +....+.||++||+++...+.+..++
T Consensus        14 ~l~aLa~~~F~igttEfv~~gLLp~iA~d-l~vs~~~aG~lis~yAl~~ai~a-p~l~~lt~r~~Rr~lLl~~l~lFi~~   91 (394)
T COG2814          14 ALLALALAAFAIGTTEFVPVGLLPPIAAD-LGVSEGAAGQLITAYALGVALGA-PLLALLTGRLERRRLLLGLLALFIVS   91 (394)
T ss_pred             HHHHHHHHHHHHHhHHHHHHhchHHHHHH-cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHcccchHHHHHHHHHHHHHH
Confidence            35556777788888888889999999988 89999999999999999999999 66679999999999999999999999


Q ss_pred             HHHHHhcCCchhHHHH-HHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCc
Q 013312          327 MFICSISWSAWVPYAT-TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPF  405 (445)
Q Consensus       327 ~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~  405 (445)
                      .++.+++++++.+.+. ++.++..+..++...+...+.+|+++|+++.++..+...++..+|.+++.++-|.+       
T Consensus        92 n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~-------  164 (394)
T COG2814          92 NLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLF-------  164 (394)
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHh-------
Confidence            9999999999988887 88899999999999999999999999999999999999999999999999999987       


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHhccC
Q 013312          406 NFPGFSIMCIGLASMVAFIQSLMMSH  431 (445)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (445)
                      +|-.. |.+.+.+.+++.+..+...|
T Consensus       165 GWR~~-F~~ia~l~ll~~~~~~~~lP  189 (394)
T COG2814         165 GWRAT-FLAIAVLALLALLLLWKLLP  189 (394)
T ss_pred             hHHHH-HHHHHHHHHHHHHHHHHhCC
Confidence            55554 66666667766666665555

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.54  E-value=4.1e-13  Score=127.05  Aligned_cols=154  Identities=14%  Similarity=0.046  Sum_probs=127.4

Q ss_pred             cchhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHH
Q 013312          244 SSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAA  323 (445)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  323 (445)
                      +++++..+.+..++..+........+|.++++++|.|+.+.|+..+...++..+.+ +..|+++||+|||+++..+.+..
T Consensus        13 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~-~~~G~l~Dr~g~r~~l~~~~~~~   91 (399)
T PRK05122         13 LTLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSR-PHAGRYADTLGPKKAVVFGLCGC   91 (399)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhc-hhhHhHHhccCCcchHHHHHHHH
Confidence            44566667778888888888888899999988899999999999999999999998 78899999999999999988877


Q ss_pred             HHHHHHHHh---cCC-----chhHHHH-HHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 013312          324 CINMFICSI---SWS-----AWVPYAT-TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPL  394 (445)
Q Consensus       324 ~~~~~~~~~---~~~-----~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l  394 (445)
                      .++.+....   .++     .+.++.. ++.|++.+...+...++..|..|+|+|+++.++......+|..++|.+.+.+
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l  171 (399)
T PRK05122         92 ALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLL  171 (399)
T ss_pred             HHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHH
Confidence            666544333   222     1223333 6778888888899999999999999999999999999999999999999999


Q ss_pred             HHhh
Q 013312          395 TALF  398 (445)
Q Consensus       395 ~~~~  398 (445)
                      .+..
T Consensus       172 ~~~~  175 (399)
T PRK05122        172 YHWG  175 (399)
T ss_pred             HHcc
Confidence            8865

>PRK10504 putative transporter; Provisional

Probab=99.53  E-value=8.1e-13  Score=127.86  Aligned_cols=151  Identities=13%  Similarity=0.038  Sum_probs=129.6

Q ss_pred             hhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHH
Q 013312          246 VTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACI  325 (445)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  325 (445)
                      +.++......++............|.+.++ +|.++.+.++..+...++..++. +..|+++||+|||+.+..+..+..+
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~-~~~g~l~d~~g~r~~~~~~~~~~~~   87 (471)
T PRK10504         10 WQLWIVAFGFFMQSLDTTIVNTALPSMAQS-LGESPLHMHMVIVSYVLTVAVML-PASGWLADRVGVRNIFFTAIVLFTL   87 (471)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhchHHHHHHHHHHHHH
Confidence            345566666777777777778889999887 89999999999988888888887 7889999999999999988888888


Q ss_pred             HHHHHHhcCCchhHHHH-HHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013312          326 NMFICSISWSAWVPYAT-TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALF  398 (445)
Q Consensus       326 ~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~  398 (445)
                      +.+...+.++.+.++.. .+.|++.+...|...+.+.|.+|+++|+++.|+.+...++|..++|.+.|.+.++.
T Consensus        88 ~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~  161 (471)
T PRK10504         88 GSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYA  161 (471)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhc
Confidence            88777777776665554 77789999889999999999999999999999999999999999999999998864

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.53  E-value=7.8e-13  Score=124.19  Aligned_cols=171  Identities=12%  Similarity=0.058  Sum_probs=139.4

Q ss_pred             hhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHH
Q 013312          246 VTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACI  325 (445)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  325 (445)
                      +.++......+............+|.+.++ +|.+..+.|+..+...++..+++ +..|++.||+|||+.+..+..+.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~s~~~~~~~~~~-~~~g~l~dr~g~r~~~~~~~~~~~~   80 (382)
T PRK10091          3 KVILSLALGTFGLGMAEFGIMGVLTELAHD-VGISIPAAGHMISYYALGVVVGA-PIIALFSSRYSLKHILLFLVALCVI   80 (382)
T ss_pred             chHHHHHHHHHHHHhhHHHHHhChHHHHHH-cCCCHHHHhHHHHHHHHHHHHHH-HHHHHHHccCccHHHHHHHHHHHHH
Confidence            445566667777777777777888887766 89999999999999999999998 8889999999999999999999999


Q ss_pred             HHHHHHhcCCchhHHHH-HHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 013312          326 NMFICSISWSAWVPYAT-TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAP  404 (445)
Q Consensus       326 ~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~  404 (445)
                      +.+...+.++.+.++.. .+.|++.+...+.....+.|..|+++|+++++.......++..++|.+.+.+.+..      
T Consensus        81 ~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~------  154 (382)
T PRK10091         81 GNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEF------  154 (382)
T ss_pred             HHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhc------
Confidence            99999998888877765 77788888888888888999999999999999999999999999999999888754      


Q ss_pred             cccchhHHHHHHHHHHHHHHHH
Q 013312          405 FNFPGFSIMCIGLASMVAFIQS  426 (445)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~~~~  426 (445)
                       ++.. .+.+.+++.++..+..
T Consensus       155 -gwr~-~f~~~~~~~~~~~~~~  174 (382)
T PRK10091        155 -SWRY-TFLLIAVFNIAVLASI  174 (382)
T ss_pred             -cHHH-HHHHHHHHHHHHHHHH
Confidence             3333 3455554444444333

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.53  E-value=1.2e-12  Score=123.93  Aligned_cols=134  Identities=9%  Similarity=-0.029  Sum_probs=116.9

Q ss_pred             hhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHhcCCchhHHH
Q 013312          262 EGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYA  341 (445)
Q Consensus       262 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (445)
                      ........| .+++++|+++.+.|+..+...++..+++ +..|++.||+|||+.+..+.++..++.+...+.++.+.++.
T Consensus        24 ~~~~~~~~~-~l~~~~~~s~~~~g~~~s~~~~~~~~~~-~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~  101 (412)
T TIGR02332        24 RINIGFAGL-TMGKDLGLSATMFGLAATLFYAAYVICG-IPSNIMLAIIGARRWIAGIMVLWGIASTATMFATGPESLYL  101 (412)
T ss_pred             hhhHHHHHH-hhHhhcCCCHHHHHHHHHHHHHHHHHHH-hhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            333444444 6667799999999999999999999998 77789999999999999999999999999888888776666


Q ss_pred             H-HHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013312          342 T-TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTAL  397 (445)
Q Consensus       342 ~-~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~  397 (445)
                      . .+.|++.+...|....++.|.+|+++|+++.|+.+....+|..+++.+.+++.+.
T Consensus       102 ~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~  158 (412)
T TIGR02332       102 LRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILAL  158 (412)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            5 7789999988999999999999999999999999999999999999999988753

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK12382 putative transporter; Provisional

Probab=99.53  E-value=9e-13  Score=124.37  Aligned_cols=152  Identities=15%  Similarity=0.072  Sum_probs=121.1

Q ss_pred             hhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHH
Q 013312          246 VTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACI  325 (445)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  325 (445)
                      +.++...+..++...........+|.++++++|.|+.+.|+..+...+...+.+ +..|+++||+|||+.+..+.+...+
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~-~~~G~l~Dr~g~r~~l~~~~~~~~~   93 (392)
T PRK12382         15 FSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTR-GYAGRLADQYGAKRSALQGMLACGL   93 (392)
T ss_pred             ccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHh-hhhhHHHHhhcchHHHHHHHHHHHH
Confidence            345555556666666666677888888887799999999999999999999998 7889999999999999988777665


Q ss_pred             HHHHH---Hhc-----CCchhHHHH-HHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013312          326 NMFIC---SIS-----WSAWVPYAT-TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTA  396 (445)
Q Consensus       326 ~~~~~---~~~-----~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~  396 (445)
                      +.+..   ...     ++.+.+++. .+.|++.+...+...+++.|..|+|+|++++|..+.....+..++|.+.+.+.+
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~  173 (392)
T PRK12382         94 AGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHS  173 (392)
T ss_pred             HHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            54322   111     233333343 677888888888888899999999999999999999999999999999999887


Q ss_pred             hh
Q 013312          397 LF  398 (445)
Q Consensus       397 ~~  398 (445)
                      ..
T Consensus       174 ~~  175 (392)
T PRK12382        174 HF  175 (392)
T ss_pred             cc
Confidence            64

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.52  E-value=1.1e-12  Score=123.25  Aligned_cols=150  Identities=9%  Similarity=-0.006  Sum_probs=131.9

Q ss_pred             hhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHH
Q 013312          246 VTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACI  325 (445)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  325 (445)
                      |.++.+.+..++...........+|.+.++ +|.|+.+.|+..+...++..+++ +..|+++||+|||+.+..+..+..+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~~~s~~~~G~~~s~~~l~~~~~~-~~~g~l~dr~g~k~~~~~~~~~~~~   83 (381)
T PRK03633          6 RPVLLLLCGLLLLTLAIAVLNTLVPLWLAQ-EHLPTWQVGVVSSSYFTGNLVGT-LLAGYVIKRIGFNRSYYLASLIFAA   83 (381)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            446667777888888888889999999987 79999999999999999999998 7889999999999999999999999


Q ss_pred             HHHHHHhcCCchhHHHH-HHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013312          326 NMFICSISWSAWVPYAT-TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTAL  397 (445)
Q Consensus       326 ~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~  397 (445)
                      +.....+.++.+.+... ++.|++.+...+.......+..++++|+++++..+...++|..+||.+.+.+.+.
T Consensus        84 ~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~  156 (381)
T PRK03633         84 GCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTE  156 (381)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            88888888887766665 6778888888888888888888999999999999999999999999999988764

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.52  E-value=8.4e-13  Score=124.23  Aligned_cols=148  Identities=14%  Similarity=0.151  Sum_probs=123.3

Q ss_pred             hhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHH
Q 013312          246 VTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACI  325 (445)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  325 (445)
                      |.++.+++..++..++........+...++ ++.++.+.++..+...+...+.. ++.|+++||+|||+++..+..+..+
T Consensus         3 ~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~l~~~l~~-~~~G~laDr~grr~vl~~~~~~~~~   80 (393)
T PRK11195          3 KGFYAIMAAQFFSALADNALLFAAIALLKE-LHYPDWSQPLLQMFFVLAYIVLA-PFVGAFADSFPKGRVMFIANGIKLL   80 (393)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHHHHHHHH-hhhhHhhhccCCchhhHHHHHHHHH
Confidence            456666777777777666665666666555 78899999999999999999988 8889999999999999999988887


Q ss_pred             HHHHHHhcCCchhHHHHHHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013312          326 NMFICSISWSAWVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTAL  397 (445)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~  397 (445)
                      +.+.+.+..+.  ...-.+.|++.+...|...+++.|.+|+|+|++++|+.+....++..+||.++|.+.+.
T Consensus        81 ~~~~~~~~~~~--~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~  150 (393)
T PRK11195         81 GCLLMLFGIHP--LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP  150 (393)
T ss_pred             HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77665555443  22336679999999999999999999999999999999999999999999999999985

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.51  E-value=6.4e-13  Score=126.13  Aligned_cols=169  Identities=20%  Similarity=0.256  Sum_probs=135.3

Q ss_pred             HHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHHHHHHHHHHH
Q 013312           17 VFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLA   96 (445)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~   96 (445)
                      .+..........+.+|.+.++...    +.+......|.+.++..++..++.+..|+++||+|||+.+..+.....++.+
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~  303 (408)
T PRK09874        228 TLIIQVATGSIAPILTLYVRELAG----NVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLI  303 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHH
Confidence            334445555667778888776321    1122223457777888889999999999999999999999999888888887


Q ss_pred             HHHhhcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhhhhh----chhhH
Q 013312           97 ILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----STTSA  172 (445)
Q Consensus        97 ~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~----~w~~~  172 (445)
                      ...+.++   .+.+++.+++.|+ +.+...|...+.+.+..|+++|++.++..+....+|..+||.+++.+    +|++.
T Consensus       304 ~~~~~~~---~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~  379 (408)
T PRK09874        304 PMSFVQT---PLQLGILRFLLGA-ADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAV  379 (408)
T ss_pred             HHHHhcc---HHHHHHHHHHHHh-hhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHH
Confidence            7777777   7888899999999 88888899999999999999999999999999999999999998864    89999


Q ss_pred             HHHHHHHHHHHHHHHHHhccC
Q 013312          173 FQAATIVSMLAAAYMRVFLKD  193 (445)
Q Consensus       173 f~~~~~~~~i~~~~~~~~~~e  193 (445)
                      |++.+++.++..+...+..++
T Consensus       380 f~~~~~~~l~~~~~~~~~~~~  400 (408)
T PRK09874        380 FLVTAGVVLFNAVYSWNSLRR  400 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999998887777666554443

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.51  E-value=1.7e-13  Score=130.49  Aligned_cols=164  Identities=12%  Similarity=0.032  Sum_probs=130.2

Q ss_pred             HhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHHHHHHHHHHHHHHhhcCc
Q 013312           25 MMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSI  104 (445)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~  104 (445)
                      .......|.+..+..    .+.+.+..+.|++.++..+...++.++.|+++||+|||+.+..+.++.+++..+.+++++ 
T Consensus       240 ~~~~~~~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~-  314 (420)
T PRK09528        240 DVFDQQFPNFFASFF----ATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATG-  314 (420)
T ss_pred             HHHHHHHHHHHHHHH----hccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhccc-
Confidence            333344666665532    122344567899999999999999999999999999999999999999999888888888 


Q ss_pred             chhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHH-HHHHHhhhhhhhhhhhhh----hchhhHHHHHHHH
Q 013312          105 SFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGI-LLGVLSASFVCGTLAARF----LSTTSAFQAATIV  179 (445)
Q Consensus       105 ~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~-~~~~~~~g~~~g~~l~~~----~~w~~~f~~~~~~  179 (445)
                        .+.+++.+++.|+ +.+...+....++.|..|++.|+...+. .+....+|.++||.+.+.    .||+..|.+.+++
T Consensus       315 --~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~  391 (420)
T PRK09528        315 --PLEVSILKLLHAF-EVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGI  391 (420)
T ss_pred             --HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHH
Confidence              8888899999998 7777777888999999999988887655 566778888898888876    4899999998888


Q ss_pred             HHHHHHHHHHhccCCCC
Q 013312          180 SMLAAAYMRVFLKDDVP  196 (445)
Q Consensus       180 ~~i~~~~~~~~~~e~~~  196 (445)
                      .++..++..+.++++++
T Consensus       392 ~~i~~~~~~~~~~~~~~  408 (420)
T PRK09528        392 VLLFTLISVFTLSGDRE  408 (420)
T ss_pred             HHHHHHHHHHHhcCCch
Confidence            77766666666665443

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.51  E-value=1.5e-12  Score=125.16  Aligned_cols=154  Identities=14%  Similarity=0.075  Sum_probs=131.0

Q ss_pred             cchhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhh-hcchhHHHHHHHH
Q 013312          244 SSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPI-LGEAKLLSLGLFA  322 (445)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~  322 (445)
                      ++|.++..+...+...+++++...+++.|+++.+|++..+.++..........+.. +.+|+++|| +|||+++..+.++
T Consensus        12 ~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~-~~~G~laDr~~G~r~~~~~g~~~   90 (489)
T PRK10207         12 QPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLI-SIGGYVGDHLLGTKRTIVLGAIV   90 (489)
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH-hhHHHhhhhccchHHHHHHHHHH
Confidence            34567777778888889999999999999999999999998888888777776766 688999999 9999999999999


Q ss_pred             HHHHHHHHHhcCCchh-HHH-HHHHHhhhhhhhhhHHHHHhcccCCcc--chhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013312          323 ACINMFICSISWSAWV-PYA-TTAFSVLVVFATPSFRSIVSKQVGPNE--QGKAQGCISGISSFANIVSPLIFSPLTALF  398 (445)
Q Consensus       323 ~~~~~~~~~~~~~~~~-~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~--~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~  398 (445)
                      ..++.+.+.+..+... ++. ..+.+++.+...|...+++.|.+|+++  |++++++.....++|..++|.+.|++.++.
T Consensus        91 ~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~  170 (489)
T PRK10207         91 LAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKF  170 (489)
T ss_pred             HHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999988888765443 322 366688889999999999999998774  588999999999999999999999999876

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.51  E-value=1.7e-12  Score=125.94  Aligned_cols=172  Identities=15%  Similarity=0.070  Sum_probs=136.6

Q ss_pred             hHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHH
Q 013312          248 LSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINM  327 (445)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  327 (445)
                      +..+.+..+....-.......+|.+.++ +|.++.+.++..+.+.++..... +..|+++||+|||+.+..+..+..++.
T Consensus         8 ~~~~~~~~~~~~ld~tiv~~a~p~i~~~-l~~s~~~~~~~~~~~~l~~~~~~-~~~G~l~D~~Grk~~l~~~~~~~~~~~   85 (495)
T PRK14995          8 LVIIVLVYIPVAIDATVLHVAAPTLSMT-LGASGNELLWIIDIYSLVMAGMV-LPMGALGDRIGFKRLLMLGGTLFGLAS   85 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCHhHHHHHHHHHHHHHHHHH-HHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            4445555666666666667778888766 89999999999999999988887 777999999999999999999999999


Q ss_pred             HHHHhcCCchhHHHH-HHHHhhhhhhhhhHHHHHhccc-CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCc
Q 013312          328 FICSISWSAWVPYAT-TAFSVLVVFATPSFRSIVSKQV-GPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPF  405 (445)
Q Consensus       328 ~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~  405 (445)
                      +..++.++.+.++.. .+.|++.+...+.....+.+.+ |+++|++++|+......+|..+||.+.|.+.++.       
T Consensus        86 ~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~-------  158 (495)
T PRK14995         86 LAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHF-------  158 (495)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-------
Confidence            999999888877776 7788888888888877776655 7799999999999999999999999999998875       


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHhc
Q 013312          406 NFPGFSIMCIGLASMVAFIQSLMM  429 (445)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~~~~  429 (445)
                      ++... |.+...+.++........
T Consensus       159 gwr~~-f~i~~~~~~~~~~l~~~~  181 (495)
T PRK14995        159 YWGSV-FLINVPIVLVVMGLTARY  181 (495)
T ss_pred             ChHHH-HHHHHHHHHHHHHHHHHh
Confidence            34433 444444444444444333

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.51  E-value=2.1e-12  Score=121.91  Aligned_cols=151  Identities=11%  Similarity=0.064  Sum_probs=125.3

Q ss_pred             hhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHH
Q 013312          246 VTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACI  325 (445)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  325 (445)
                      |.+.......+....+.......+|.+.++ +|.++.+.++..+...++..++. +..|+++||+|||+.+..+.....+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~~~s~~~~~~~~~~~~~~~~~~~-~~~G~l~Dr~g~r~~l~~~~~~~~i   80 (392)
T PRK10473          3 RFLLCSFALVLLYPAGIDMYLVGLPRIAAD-LNASEAQLHIAFSVYLAGMAAAM-LFAGKIADRSGRKPVAIPGAALFII   80 (392)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHH-HhHhHHHHHhCChHHHHHHHHHHHH
Confidence            444445555566666666666778887766 79999999999999999998888 7789999999999999999999888


Q ss_pred             HHHHHHhcCCchhHHHH-HHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013312          326 NMFICSISWSAWVPYAT-TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALF  398 (445)
Q Consensus       326 ~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~  398 (445)
                      +.......++.+..+.. .+.|++.+...+...+++.|.+|+++|+++.+..+....++..++|.+.+.+.+..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~  154 (392)
T PRK10473         81 ASLLCSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKF  154 (392)
T ss_pred             HHHHHHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            88888887776655554 66788888888889999999999999999999999999999999999988877653

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.51  E-value=1.7e-12  Score=129.06  Aligned_cols=131  Identities=14%  Similarity=0.023  Sum_probs=113.6

Q ss_pred             HHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHhcCCchhHHHH-HH
Q 013312          266 QASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYAT-TA  344 (445)
Q Consensus       266 ~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  344 (445)
                      ...+|.+. +.+|.+..+.+++.+...++.+++. ++.|+++||+|||+.+..+.++..++.++..+.++.+.+++. ++
T Consensus       187 s~ilp~i~-~~~gls~~~~g~l~s~~~lG~iiG~-li~G~LsDR~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l  264 (742)
T TIGR01299       187 GFVLPSAE-KDLCIPDSGKGMLGLIVYLGMMVGA-FFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLL  264 (742)
T ss_pred             HHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            33445444 4489999999999999999999998 888999999999999999999888888888888777766665 77


Q ss_pred             HHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013312          345 FSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALF  398 (445)
Q Consensus       345 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~  398 (445)
                      .|++.+...+...+++.|.+|++.||+..+..+....+|.++++.+...+...+
T Consensus       265 ~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~  318 (742)
T TIGR01299       265 SGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHY  318 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            899999999999999999999999999999999999999999999888777653

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.50  E-value=3.8e-13  Score=120.21  Aligned_cols=169  Identities=11%  Similarity=0.091  Sum_probs=134.9

Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHH
Q 013312          251 AAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFIC  330 (445)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  330 (445)
                      ..+.+..+.+.--.+....|...++ .++|.++.|.+.+...+..-++. ++.|.++||.++|+.+..++++.++..+++
T Consensus        34 ~fiGYa~fYl~RknF~~a~p~l~e~-~~lsk~~lG~i~s~f~i~YG~sK-f~~G~~sDr~npr~fm~~gLilsai~nil~  111 (448)
T COG2271          34 IFIGYAAFYLTRKNFNLAMPALIED-GGLSKTQLGILGSAFSITYGVSK-FVMGVLSDRSNPRYFMAFGLILSAIVNILF  111 (448)
T ss_pred             HHHHHHHHHHHHHhHhhccHHHHHh-cCCCHHHHHHHHHHHHHHHHHHH-HHhhhhcccCCCceeehHHHHHHHHHHHHH
Confidence            3333444444444444555555555 78999999999999999999999 888999999999999999999999999999


Q ss_pred             HhcCCchhHHHH-HHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHH--HHHHHhhhcCCCCccc
Q 013312          331 SISWSAWVPYAT-TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIF--SPLTALFLSKGAPFNF  407 (445)
Q Consensus       331 ~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~--g~l~~~~~~~~~~~~~  407 (445)
                      ++.++.+.+.+. .+-|.+.+...|.....+.+-+|+++||+..++-|+..++|+.+.|.+.  +++.++.       ++
T Consensus       112 Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~-------~w  184 (448)
T COG2271         112 GFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHG-------GW  184 (448)
T ss_pred             hhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhcc-------ch
Confidence            999987766665 6679999999999999999999999999999999999999999999999  7777764       33


Q ss_pred             chhHHHHHHHHHHHHHHHHHhc
Q 013312          408 PGFSIMCIGLASMVAFIQSLMM  429 (445)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~  429 (445)
                      ... |++-++++++..++.++.
T Consensus       185 ~~~-f~~pgiiaiival~~~~~  205 (448)
T COG2271         185 RAA-FYFPGIIAIIVALILLFL  205 (448)
T ss_pred             hHH-HHHHHHHHHHHHHHHHHH
Confidence            333 555555555544444443

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.49  E-value=1.5e-12  Score=126.63  Aligned_cols=146  Identities=14%  Similarity=0.074  Sum_probs=126.2

Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHH
Q 013312          251 AAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFIC  330 (445)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  330 (445)
                      ..+..+.............|.+.++ +|.++.+.++..+...++..++. +..|++.||+|||+.+..+..+..++.+..
T Consensus         7 ~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~-~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~   84 (485)
T TIGR00711         7 LMLGTFMAVLDSTIVNVAIPTIAGD-LGSSLSQVQWVITSYMLANAISI-PLTGWLAKRFGTRRLFLISTFAFTLGSLLC   84 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh-cCCChhhhhHHHHHHHHHHHHHH-HhHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence            4444555555555666777777766 89999999999999999999988 888999999999999999999999999988


Q ss_pred             HhcCCchhHHHH-HHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013312          331 SISWSAWVPYAT-TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALF  398 (445)
Q Consensus       331 ~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~  398 (445)
                      ...++.+.++.. .+.|++.+...+...+++.|.+|+++|+++.++......+|..++|.+.|++.++.
T Consensus        85 ~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  153 (485)
T TIGR00711        85 GVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENY  153 (485)
T ss_pred             hCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCc
Confidence            888887766665 77788989999999999999999999999999999999999999999999998764

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK03699 putative transporter; Provisional

Probab=99.49  E-value=3.4e-12  Score=120.39  Aligned_cols=148  Identities=12%  Similarity=0.026  Sum_probs=120.5

Q ss_pred             hHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHH
Q 013312          248 LSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINM  327 (445)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  327 (445)
                      .+...+..++...........+|.+.++ +|+|+.+.++..+...++..++. +..|++.||+|||+.+..+..+..++.
T Consensus         9 ~~~~~~~~~~~~~~~~~~g~~~~~i~~~-~~~s~~~~g~~~s~~~~~~~i~~-~~~g~l~dr~g~r~~~~~~~~~~~i~~   86 (394)
T PRK03699          9 TWISFLSYALTGALVIVTGMVMGPIAEY-FNLPVSSMSNTFTFLNAGILISI-FLNAWLMEIIPLKRQLIFGFALMILAV   86 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHH-hCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            3334444444444445556667776655 89999999999999999999988 888999999999999999999888888


Q ss_pred             HHHHhcCCchhHHHH-HHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013312          328 FICSISWSAWVPYAT-TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTAL  397 (445)
Q Consensus       328 ~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~  397 (445)
                      +...+.++.+..... .+.|++.+...+...+++.|.+|+++|+++.+..+....+++.++|.+.+.+.+.
T Consensus        87 ~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  157 (394)
T PRK03699         87 AGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLAR  157 (394)
T ss_pred             HHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            888888777665554 6678888888888889999999999999999999888899999999998887653

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.49  E-value=2.1e-12  Score=122.48  Aligned_cols=149  Identities=11%  Similarity=0.070  Sum_probs=125.2

Q ss_pred             hHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHH
Q 013312          248 LSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINM  327 (445)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  327 (445)
                      +....+..+...+.........|.+.+ .+|.++.+.++..+...++..++. +..|++.||+|||+.+..+..+..++.
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~s~~~~g~~~~~~~~~~~~~~-~~~G~l~Dr~g~r~~~~~~~~~~~~~~   91 (405)
T TIGR00891        14 FSAAWLGWLLDAFDFFLVALVLAEVAG-EFGLTTVDAASLISAALISRWFGA-LMFGLWGDRYGRRLPMVTSIVLFSAGT   91 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCChhhHHHHHHHHHHHHHHHH-HHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            334455555555555555666666554 489999999999999999999998 778999999999999999999988888


Q ss_pred             HHHHhcCCchhHHHH-HHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013312          328 FICSISWSAWVPYAT-TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALF  398 (445)
Q Consensus       328 ~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~  398 (445)
                      +...+.++.+..+.. ++.|++.+...+...+++.|..|+++|+++.++.+....+|..+++.+.+.+.+..
T Consensus        92 ~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~  163 (405)
T TIGR00891        92 LACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVW  163 (405)
T ss_pred             HHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            888888887766664 77788999999999999999999999999999999999999999999999888764

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.49  E-value=3.1e-12  Score=123.77  Aligned_cols=155  Identities=14%  Similarity=0.076  Sum_probs=124.5

Q ss_pred             hcchhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhh-hcchhHHHHHHH
Q 013312          243 RSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPI-LGEAKLLSLGLF  321 (445)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~  321 (445)
                      ++++.++..+...++..++++....+++.|+++.+|+++.+.+.............. .++|+++|| +|||+.+..+..
T Consensus        18 ~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~-~~~G~LaDr~~G~r~~~~~g~~   96 (500)
T PRK09584         18 KQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLV-AIGGWLGDKVLGTKRVIMLGAI   96 (500)
T ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHhccchHHHHHHHHH
Confidence            344567778888888888999999999999988899999988777766554444444 677999999 599999999999


Q ss_pred             HHHHHHHHHHhcCC-chhHHH-HHHHHhhhhhhhhhHHHHHhcccCCcc--chhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013312          322 AACINMFICSISWS-AWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNE--QGKAQGCISGISSFANIVSPLIFSPLTAL  397 (445)
Q Consensus       322 ~~~~~~~~~~~~~~-~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~--~g~~~g~~~~~~~~g~~i~~~~~g~l~~~  397 (445)
                      +..++..++.+.++ .+.+.. ..+.+++.+...+...++..|.+|+++  ++.+.++.+...++|..++|.+.|++.++
T Consensus        97 ~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~  176 (500)
T PRK09584         97 VLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAK  176 (500)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99988888777643 333333 356788888888888899999998654  45688889999999999999999999886


Q ss_pred             h
Q 013312          398 F  398 (445)
Q Consensus       398 ~  398 (445)
                      .
T Consensus       177 ~  177 (500)
T PRK09584        177 Y  177 (500)
T ss_pred             h
Confidence            5

>PRK11043 putative transporter; Provisional

Probab=99.49  E-value=3.5e-12  Score=120.74  Aligned_cols=169  Identities=14%  Similarity=0.100  Sum_probs=127.8

Q ss_pred             HHHHHhhhhhhHHHHHHH--HHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHh
Q 013312          255 AFFSGLSEGGMQASFLYF--LKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSI  332 (445)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (445)
                      .+.....+.....+.|.+  +++.+|.++.+.++..+...++..++. +..|+++||+|||+.+..+..+..++.+...+
T Consensus        12 ~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~-~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~   90 (401)
T PRK11043         12 AGLSMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQ-LLWGPLSDRYGRKPVLLAGLSLFALGSLGMLW   90 (401)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH-HhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHH
Confidence            333333444445555544  445589999999999999999999998 88899999999999999999888888888888


Q ss_pred             cCCchhHHHH-HHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccchhH
Q 013312          333 SWSAWVPYAT-TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFS  411 (445)
Q Consensus       333 ~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~  411 (445)
                      .++.+.+... .+.|++.+...+...+.+.|.+|++++++..+..+....++..++|.+.+.+.++.       ++... 
T Consensus        91 ~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~-------g~~~~-  162 (401)
T PRK11043         91 VESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHF-------GWQAI-  162 (401)
T ss_pred             hcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------ChHHH-
Confidence            8777666554 66677777777777888999999999999999999999999999999999998865       33332 


Q ss_pred             HHHHHHHHHHHHHHHHhccCC
Q 013312          412 IMCIGLASMVAFIQSLMMSHT  432 (445)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~  432 (445)
                      +.+.+++.++..+..+..+++
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~  183 (401)
T PRK11043        163 FATLFAITLLLILPTLRLKPS  183 (401)
T ss_pred             HHHHHHHHHHHHHHHHHcCCC
Confidence            444444444444444444443

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.49  E-value=3.4e-12  Score=119.30  Aligned_cols=149  Identities=17%  Similarity=0.159  Sum_probs=123.1

Q ss_pred             hHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHH
Q 013312          248 LSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINM  327 (445)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  327 (445)
                      ++...+..+...........+.|.++++.+|+|+.+.++..+...++..++. +..|++.||+|||+.+..+.++..++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~g~l~dr~g~r~~~~~~~~~~~i~~   81 (366)
T TIGR00886         3 LFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLR-IILGFLVDKFGPRYTTTLSLLLLAIPC   81 (366)
T ss_pred             hHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHH-HHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence            3445555666666667778888877877899999999999999999999998 888999999999999999999999998


Q ss_pred             HHHHhcC-CchhHHHH-HHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013312          328 FICSISW-SAWVPYAT-TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALF  398 (445)
Q Consensus       328 ~~~~~~~-~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~  398 (445)
                      +...+.+ +.+.+... ++.|++.+ ..+....++.|.+|+++|+++.++.....++|..+++.+.+.+.+..
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~  153 (366)
T TIGR00886        82 LWAGLAVQSYSVLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSL  153 (366)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            8888887 77766554 55676644 34566788999999999999999999999999999988888877653

>TIGR00897 2A0118 polyol permease family

Probab=99.48  E-value=4.5e-12  Score=119.91  Aligned_cols=152  Identities=18%  Similarity=0.141  Sum_probs=122.0

Q ss_pred             chhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHH
Q 013312          245 SVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAAC  324 (445)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  324 (445)
                      +|.+....+..++..........+.+.+.++ +|.++.+.|+..+...++..+++ +..|++.||+|||+.+..+..+..
T Consensus        12 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~i~~-~~~g~l~dr~g~k~~l~~~~~~~~   89 (402)
T TIGR00897        12 PLNLLWGYIGVVVFMTGDGLEQGWLSPFLKA-LGLSPQQSASAFTLYGIAAAISA-WISGVVAEIIGPLKTMMIGLLLWC   89 (402)
T ss_pred             CchhhHHHHHHHHHHHhhhhHHHhHHHHHHH-hCCCHHHhHHHHHHHHHHHHHHH-HHHHHHHHHcCcHHHHHHHHHHHH
Confidence            4556666777777777777777888999876 79999999999999999999998 788999999999999999888888


Q ss_pred             HHHHHHH---hc-CCchhHHHH-HHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHH-HHHHHHHHHHHHhh
Q 013312          325 INMFICS---IS-WSAWVPYAT-TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFAN-IVSPLIFSPLTALF  398 (445)
Q Consensus       325 ~~~~~~~---~~-~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~-~i~~~~~g~l~~~~  398 (445)
                      ++.+...   .. ++.+.++.. .+.|++.+...+.....+.+..|+++|++++|+.+...++|. .++|.+.+.+.+..
T Consensus        90 ~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~  169 (402)
T TIGR00897        90 VGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAF  169 (402)
T ss_pred             HHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            7765432   22 344444433 556777777777778888889999999999999999999996 57898888887764

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.48  E-value=7e-12  Score=117.58  Aligned_cols=148  Identities=15%  Similarity=0.088  Sum_probs=114.5

Q ss_pred             hhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHH
Q 013312          246 VTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACI  325 (445)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  325 (445)
                      |.++...+................+.+.++.+|+|+.+.+++.++..+...+.+ +..|++.||+|.|+++..+..+..+
T Consensus        34 r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~r-ip~G~l~Dr~G~R~v~~~~~ll~~i  112 (462)
T PRK15034         34 RNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLR-VPYSFMVPIFGGRRWTVFSTAILII  112 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCChHHHHHHHHHHHH
Confidence            455555555444444555555555555554699999999999999999999998 5569999999999999999999888


Q ss_pred             HHHHHHhc-----CCchhHHHH-HHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013312          326 NMFICSIS-----WSAWVPYAT-TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLT  395 (445)
Q Consensus       326 ~~~~~~~~-----~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~  395 (445)
                      ..+...+.     ++.+.+++. .+.|++ +..++.....+++.+|+++||++.|+....+++|..+++.+.+.+.
T Consensus       113 ~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i  187 (462)
T PRK15034        113 PCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVI  187 (462)
T ss_pred             HHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            88888775     566655554 677776 6678888999999999999999999998777777777666665543

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=99.47  E-value=2.6e-10  Score=105.84  Aligned_cols=370  Identities=13%  Similarity=0.102  Sum_probs=210.1

Q ss_pred             hhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHH
Q 013312            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP   87 (445)
Q Consensus         8 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~   87 (445)
                      +..+.++.+.++...+.-+..-..|.++.+.. |  +    +....+...-.-.+...++++..|.+.||..|+++...+
T Consensus         2 ~~~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~-p--~----sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~   74 (432)
T PF06963_consen    2 RALWRLYLSHFLSTWGDRMWEFAVPLFLISIF-P--G----SLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTS   74 (432)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-C--C----CcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHH
Confidence            45667899999999999998888899887642 1  1    112233334445677788999999999999999998877


Q ss_pred             HHHHHHHHHHH----H--hhcC------cchhHHHHHHHHHhhhccchhHHHHHHHHHhcCC------CccchhhHHHHH
Q 013312           88 LTLSIIPLAIL----A--YRRS------ISFFYAYYALRTLTAMVCEGSINCLALAYVADNI------SERQRASAFGIL  149 (445)
Q Consensus        88 ~~~~~~~~~~~----~--~~~~------~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~------~~~~r~~~~~~~  149 (445)
                      .+..-++..+.    .  +...      ......+++.-.+.|....-.......+.=.||.      +++++.+.++.+
T Consensus        75 l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~m  154 (432)
T PF06963_consen   75 LVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATM  154 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHH
Confidence            65443332222    2  1111      1112233333333332011111112222223443      344566666666


Q ss_pred             HHHHhhhhhhhhhhhhhh----chhhHHHHHHHHHHHHHHHHHHhc----cCCCCCCCCcCCccccchhhhcccccCCCC
Q 013312          150 LGVLSASFVCGTLAARFL----STTSAFQAATIVSMLAAAYMRVFL----KDDVPNDDDDDLTRPIITEETEGVNQNESN  221 (445)
Q Consensus       150 ~~~~~~g~~~g~~l~~~~----~w~~~f~~~~~~~~i~~~~~~~~~----~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (445)
                      .-.-.+..+++|++.+.+    +.+....+.+...++..+.=.+++    +..|+-..++++.++..+...+   +..+.
T Consensus       155 RRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~L~~~~~~~~~~~~~~~~---~~~~~  231 (432)
T PF06963_consen  155 RRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFLLARVYNSVPALAVKKRSSESESSSDEE---SSSES  231 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHhcCCCCCcccccccccc---ccccc
Confidence            666677888899888774    455555555555555544332222    1222111111000000000000   00000


Q ss_pred             CCccccccccc---chhHHHHHHhhcchhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHH
Q 013312          222 SPVKIPVCKKI---PSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTIS  298 (445)
Q Consensus       222 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~  298 (445)
                      ++.....++..   ...++.++...+.+.+...+...+++.. .-++......|+... |+++...|..-+...+.++.+
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~w~~Y~~q~vflas~alalLY~T-VLsf~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~g  309 (432)
T PF06963_consen  232 SSDPSILKRLWNPLRTIIRGWRTYFRQPVFLASFALALLYFT-VLSFGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLG  309 (432)
T ss_pred             cchhhHHHHHHHHHHHHhccHHHHHhCHHHHHHHHHHHHHHH-HhcCcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHH
Confidence            00000000111   1122234456667766655555555443 444577788899885 999999999999999999998


Q ss_pred             HHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHH----hcCCc---hhHH---HH-HHHHhhhhhhhhhHHHHHhcccCCc
Q 013312          299 QLLFMPLLAPILGEAKLLSLGLFAACINMFICS----ISWSA---WVPY---AT-TAFSVLVVFATPSFRSIVSKQVGPN  367 (445)
Q Consensus       299 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~---~~~~---~~-~~~g~~~~~~~~~~~~~~~~~~~~~  367 (445)
                      . +..+++.+|+|..+.-..+......++.+..    ...++   ....   .. .+--+|.-..--...-+++|.+|++
T Consensus       310 T-~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~  388 (432)
T PF06963_consen  310 T-WVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPES  388 (432)
T ss_pred             H-HHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHH
Confidence            8 8889999999998876666665444333221    12221   1111   11 2223455555677788899999999


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHH
Q 013312          368 EQGKAQGCISGISSFANIVSPLI  390 (445)
Q Consensus       368 ~~g~~~g~~~~~~~~g~~i~~~~  390 (445)
                      +||+..|+.+..+++...+.-.+
T Consensus       389 ~Rg~v~gvq~sl~~lf~ll~~~~  411 (432)
T PF06963_consen  389 ERGAVSGVQNSLQSLFELLSFVL  411 (432)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999887665533

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>TIGR00895 2A0115 benzoate transport

Probab=99.46  E-value=1.8e-12  Score=122.52  Aligned_cols=137  Identities=14%  Similarity=0.127  Sum_probs=117.1

Q ss_pred             hhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHhcCCchhH
Q 013312          260 LSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVP  339 (445)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (445)
                      ..........|.+.++ +|.++.+.+++.+...++..++. +..+++.||+|||+.+..+..+..++.+...+.++.+..
T Consensus        31 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (398)
T TIGR00895        31 YDLAAMGFAAPAISAE-WGLDPVQLGFLFSAGLIGMAFGA-LFFGPLADRIGRKRVLLWSILLFSVFTLLCALATNVTQL  108 (398)
T ss_pred             HHHHHHHhhHHHHhhc-cCCCHHHHHHHHHHHHHHHHHHH-HHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHH
Confidence            3334444555666555 89999999999999999999988 778999999999999999999888888888888777765


Q ss_pred             HHH-HHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013312          340 YAT-TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALF  398 (445)
Q Consensus       340 ~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~  398 (445)
                      ... .+.+++.+...+...+++.|.+|+++|+++.|+.+....+|..++|.+.+.+.+..
T Consensus       109 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~  168 (398)
T TIGR00895       109 LILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVF  168 (398)
T ss_pred             HHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcc
Confidence            554 67788888899999999999999999999999999999999999999999998765

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.46  E-value=1.5e-11  Score=118.62  Aligned_cols=163  Identities=15%  Similarity=0.104  Sum_probs=116.6

Q ss_pred             hhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHhcCCchhHHHH-
Q 013312          264 GMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYAT-  342 (445)
Q Consensus       264 ~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  342 (445)
                      ......|.+. +.+|++..+.++..+...++..++. ++.|+++||+|+|+.+..+.+...++.++..+.++.+.++.. 
T Consensus        54 ~~~~~~~~l~-~~~gls~~~~g~~~~~~~~~~~~~~-~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r  131 (476)
T PLN00028         54 AAAPLLPIIR-DNLNLTKSDIGNAGIASVSGSIFSR-LAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVR  131 (476)
T ss_pred             HHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            3444455554 5589999999998888888888887 788999999999999999988888888888888777766554 


Q ss_pred             HHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC--CCCcccchhHHHHHHHHHH
Q 013312          343 TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSK--GAPFNFPGFSIMCIGLASM  420 (445)
Q Consensus       343 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~--~~~~~~~~~~~~~~~~~~~  420 (445)
                      ++.|++.+... ....+++|.+|+++||++.|+.+...++|..+++.+.+.+.+.....  ....++.. .+.+.+++.+
T Consensus       132 ~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~-~f~i~g~l~l  209 (476)
T PLN00028        132 FFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRI-AFFVPGLLHI  209 (476)
T ss_pred             HHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHH-HHHHHHHHHH
Confidence            56676665543 34567889999999999999999998999999888887665543211  01113333 3555555555


Q ss_pred             HHHHHHHhcc
Q 013312          421 VAFIQSLMMS  430 (445)
Q Consensus       421 ~~~~~~~~~~  430 (445)
                      +..+..+...
T Consensus       210 ~~~l~~~~~~  219 (476)
T PLN00028        210 IMGILVLTLG  219 (476)
T ss_pred             HHHHHHHHHc
Confidence            4444444443

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.46  E-value=4.5e-12  Score=120.23  Aligned_cols=146  Identities=16%  Similarity=0.122  Sum_probs=121.1

Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHH
Q 013312          250 QAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFI  329 (445)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  329 (445)
                      ......++............|.+.++ +|.++.+.++..+...++..++. +..|++.||+|||+.+..+..+..++.+.
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~~~~~~~~~~~~-~~~g~l~dr~g~r~~~~~~~~~~~~~~~~   96 (406)
T PRK11551         19 LCFLVALLEGLDLQSAGVAAPRMAQE-FGLDVAQMGWAFSAGILGLLPGA-LLGGRLADRIGRKRILIVSVALFGLFSLA   96 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCchhHHHHHHHHHHHHHH
Confidence            34444555555555556666766665 89999999999999999999988 77899999999999999999888888887


Q ss_pred             HHhcCCchhHHHH-HHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013312          330 CSISWSAWVPYAT-TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTAL  397 (445)
Q Consensus       330 ~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~  397 (445)
                      ..+.++.+.+... .+.|++.+...+...+++.|.+|+++|++++++.+....+|..+++.+.+.+.+.
T Consensus        97 ~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~  165 (406)
T PRK11551         97 TAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGD  165 (406)
T ss_pred             HHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence            7788777766554 7778888888999999999999999999999999999999999999888766554

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.45  E-value=2.6e-12  Score=121.35  Aligned_cols=154  Identities=11%  Similarity=0.071  Sum_probs=125.6

Q ss_pred             hhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHhcCCchhHHHH-
Q 013312          264 GMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYAT-  342 (445)
Q Consensus       264 ~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  342 (445)
                      ......|. +++.+|.++.+.++..+...++..++. +..|++.||+|||+.+..+..+..++.....+.++.+.++.. 
T Consensus        12 ~~~~~~~~-~~~~~g~s~~~~~~~~~~~~~~~~~~~-~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (399)
T TIGR00893        12 NLSFAAPM-LQEDLGLSAAQYGYVFSAFSWGYVVGQ-FPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILR   89 (399)
T ss_pred             hhhHhHHH-HHHhhCCChhhHHHHHHHHHHHHHHHH-HhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence            33444444 555689999999999999999999998 788999999999999999999988888888888887776665 


Q ss_pred             HHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccchhHHHHHHHHHHHH
Q 013312          343 TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVA  422 (445)
Q Consensus       343 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (445)
                      .+.|++.+...+....++.|.+|+++|++++++.+....+|..++|.+.+.+.+..       ++.. .+.+.+++.++.
T Consensus        90 ~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-------~~~~-~~~~~~~~~~~~  161 (399)
T TIGR00893        90 VLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHF-------SWQW-AFIIEGVLGIIW  161 (399)
T ss_pred             HHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhC-------CchH-HHHHHHHHHHHH
Confidence            77789999999999999999999999999999999999999999999999988765       3332 345544444444


Q ss_pred             HHHHH
Q 013312          423 FIQSL  427 (445)
Q Consensus       423 ~~~~~  427 (445)
                      .+...
T Consensus       162 ~~~~~  166 (399)
T TIGR00893       162 GVLWL  166 (399)
T ss_pred             HHHhh
Confidence            44433

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=99.45  E-value=8.5e-13  Score=120.97  Aligned_cols=175  Identities=17%  Similarity=0.176  Sum_probs=138.6

Q ss_pred             hcchhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHH
Q 013312          243 RSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFA  322 (445)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  322 (445)
                      +.++....+++...+.+++.....+++--+++| .+-.+...|......-.+-++. .+...++.+|+|+-+++..++.+
T Consensus       368 ~~s~~~llff~~av~mG~g~~lv~tFLfWHled-~~~~~~LfGv~~a~~~~gEI~~-~ffs~klI~kiGHv~v~~lgLa~  445 (618)
T KOG3762|consen  368 FASPHILLFFFVAVVMGAGVGLVFTFLFWHLED-LGGIKTLFGVVSALCHAGEILF-YFFSFKLIEKIGHVNVMYLGLAC  445 (618)
T ss_pred             hcCCCEEehhHHHHHHHHHHHHHHHHHHHHHhh-cCCcceeeeehhhhhccchHHH-HHHHHHHHHHhcccceeeehhhH
Confidence            344555556777777777777788888888888 5666666675555555555554 48889999999999999999999


Q ss_pred             HHHHHHHHHhcCCchhHHHH-HHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHH-HHHHHHHHHHHHHHHHhhhc
Q 013312          323 ACINMFICSISWSAWVPYAT-TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGIS-SFANIVSPLIFSPLTALFLS  400 (445)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~-~~g~~i~~~~~g~l~~~~~~  400 (445)
                      .++-++.+....++|.++.. ++-|+..+..+....+|++...||+.+.+++|+..... .+|..+|.+++|.+.+.+  
T Consensus       446 ~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~f--  523 (618)
T KOG3762|consen  446 NVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERF--  523 (618)
T ss_pred             HHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheee--
Confidence            99999999999999988887 77899999999999999999999999999999988877 789999999999998875  


Q ss_pred             CCCCcccchhHHHHHHHHHHHHHHHHH
Q 013312          401 KGAPFNFPGFSIMCIGLASMVAFIQSL  427 (445)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (445)
                            +....|...++.+++.++...
T Consensus       524 ------g~~ttf~~~giAcl~~l~~~~  544 (618)
T KOG3762|consen  524 ------GARTTFRIFGIACLVTLALFI  544 (618)
T ss_pred             ------hhHHHHHHHHHHHHHHHHHHH
Confidence                  233345555555555444443

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.45  E-value=4.1e-12  Score=119.25  Aligned_cols=135  Identities=13%  Similarity=0.118  Sum_probs=118.6

Q ss_pred             hhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHhcCCchhHHH
Q 013312          262 EGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYA  341 (445)
Q Consensus       262 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (445)
                      .......+|.+.++ +|.|+.+.++..+...++..++. +..|++.||+|||+.+..+..+..++...+.+.++.+....
T Consensus         7 ~~~~~p~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~-~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~   84 (377)
T PRK11102          7 IDMYLPALPVIAAD-FGVSAGSVQMTLSAYILGFAIGQ-LFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIY   84 (377)
T ss_pred             HHHHhccHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHH-HhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHH
Confidence            34455677888876 79999999999999999999988 77899999999999999999999999888888877766655


Q ss_pred             H-HHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013312          342 T-TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALF  398 (445)
Q Consensus       342 ~-~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~  398 (445)
                      . .+.|++.+...+...+++.|..|+++|+++.++.+....+|..++|.+.+.+.+..
T Consensus        85 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~  142 (377)
T PRK11102         85 MRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWF  142 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            4 66788888888999999999999999999999999999999999999999998865

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.45  E-value=5.7e-13  Score=127.75  Aligned_cols=165  Identities=14%  Similarity=0.135  Sum_probs=127.0

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhcccccccc--CchhHhHH
Q 013312            9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQY--GRKAMLTL   86 (445)
Q Consensus         9 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~--Grr~~l~~   86 (445)
                      .++......++..++.......+|.+.++        .+.+..+.|++.++..++..++.++.|+++||.  ++|+...+
T Consensus       242 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~--------~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~  313 (455)
T TIGR00892       242 GFLVYLSGNVIMFLGFFAPIIFLVPYAKD--------KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLF  313 (455)
T ss_pred             hHHHHHHHHHHHHHHccchHHHHHHHHHH--------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHH
Confidence            34445555555666655556677777653        255667789999999999999999999999984  34443333


Q ss_pred             --HHHHHHHHHHHHHhhcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhh
Q 013312           87 --PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAA  164 (445)
Q Consensus        87 --~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~  164 (445)
                        +.+..+++.+++...++   ++.+++.+++.|+ +.+...+...+++.|.+|++++++.+++++...++|..+||.++
T Consensus       314 ~~~~~~~~l~~ll~~~~~~---~~~~~i~~~~~G~-~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~  389 (455)
T TIGR00892       314 SFALLFNGLTHLLCALAGD---YTGLVIYCIFFGL-SFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLA  389 (455)
T ss_pred             HHHHHHHHHHHHHHHHhch---HHHHHHHHHHHHH-HhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccce
Confidence              33444555556667777   8888899999999 88888888999999999999999999999999999999999998


Q ss_pred             hhh-----chhhHHHHHHHHHHHHHH
Q 013312          165 RFL-----STTSAFQAATIVSMLAAA  185 (445)
Q Consensus       165 ~~~-----~w~~~f~~~~~~~~i~~~  185 (445)
                      +.+     +|++.|++.+++.++..+
T Consensus       390 G~l~~~~g~~~~~f~~~~~~~li~~~  415 (455)
T TIGR00892       390 GRLVDATKNYKYIFYASGSIVVSAGL  415 (455)
T ss_pred             eeeehhcCCcchHHHHhhHHHHHHHH
Confidence            863     588999888877665544

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.45  E-value=3.4e-12  Score=120.36  Aligned_cols=164  Identities=14%  Similarity=0.143  Sum_probs=123.0

Q ss_pred             HHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHHHHHHHHHHH
Q 013312           17 VFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLA   96 (445)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~   96 (445)
                      .+........+....|.+.++.       .+.+..+.|++.+...+...++.++.|+++||+|||+.+..+.....+...
T Consensus       225 ~~~~~~~~~~~~~~~p~~l~~~-------~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~  297 (393)
T PRK15011        225 CTLMWGTNSLYIINMPLFIINE-------LHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYA  297 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence            3333344444556778777642       345556778887877788888999999999999999988877766666555


Q ss_pred             HHHhhcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhhhh----hchhhH
Q 013312           97 ILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF----LSTTSA  172 (445)
Q Consensus        97 ~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~----~~w~~~  172 (445)
                      .....++   .+.+++.+++.++ +.+...+....+..|..|+ +|+++.++++....+|..+||.+++.    ++|+..
T Consensus       298 ~~~~~~~---~~~~l~~~~l~~~-~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~  372 (393)
T PRK15011        298 GMLMAHS---PAILLGLQLLNAI-YIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAV  372 (393)
T ss_pred             HHHHHhh---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            5555666   7777888988888 6677667777888998884 68999999998889999999888876    489999


Q ss_pred             HHHHHHHHHHHHHHHHHhccC
Q 013312          173 FQAATIVSMLAAAYMRVFLKD  193 (445)
Q Consensus       173 f~~~~~~~~i~~~~~~~~~~e  193 (445)
                      |++.+++.++..+.. +..||
T Consensus       373 ~~~~~~~~~~~~~~~-~~~~~  392 (393)
T PRK15011        373 FWFALVMIIATLFCL-LRIKD  392 (393)
T ss_pred             HHHHHHHHHHHHHHH-HhhcC
Confidence            988887766655444 45554

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.45  E-value=9.4e-12  Score=118.01  Aligned_cols=157  Identities=11%  Similarity=0.133  Sum_probs=122.7

Q ss_pred             hhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHhcCCchhHH
Q 013312          261 SEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPY  340 (445)
Q Consensus       261 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (445)
                      ....+...+|.+.++ +|.|+.+.++..+...++..++. +..|+++||+|||+.+..+.....++.......++.+.++
T Consensus        28 ~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~-~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~  105 (406)
T PRK15402         28 ANDMIQPGMLAVVED-FNAGAEWVPTSMTAYLAGGMFLQ-WLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFT  105 (406)
T ss_pred             hhhhHhcchHHHHHH-hCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHH
Confidence            334445556665555 89999999999999999999988 7779999999999999999988888888888877777665


Q ss_pred             HH-HHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccchhHHHHHHHHH
Q 013312          341 AT-TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLAS  419 (445)
Q Consensus       341 ~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~  419 (445)
                      .. .+.|++.+...+...+.+.|.+|+++|++..++......++..++|.+.+.+.++.       ++... +.+.+++.
T Consensus       106 ~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~-------~w~~~-~~~~~~~~  177 (406)
T PRK15402        106 LLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVL-------PWRGM-FVLFAALA  177 (406)
T ss_pred             HHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-------CccHH-HHHHHHHH
Confidence            54 66678887778888899999999999999999998888899999999999988764       33333 44444444


Q ss_pred             HHHHHHHH
Q 013312          420 MVAFIQSL  427 (445)
Q Consensus       420 ~~~~~~~~  427 (445)
                      ++.....+
T Consensus       178 ~~~~~~~~  185 (406)
T PRK15402        178 ALSFFGLW  185 (406)
T ss_pred             HHHHHHHH
Confidence            44444433

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.44  E-value=9.8e-12  Score=116.61  Aligned_cols=168  Identities=13%  Similarity=0.176  Sum_probs=125.4

Q ss_pred             HHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHH-HHHHHHHHHHHHH
Q 013312          252 AVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLS-LGLFAACINMFIC  330 (445)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~  330 (445)
                      .+..++..++.......+|.|+++++|.|+.+.|+..+...+...+.+ +..|+++||+|||+.+. .+.....++.+..
T Consensus         3 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~-~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~   81 (375)
T TIGR00899         3 LLVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVS-QLLATRSDYQGDRKGLILFCCLLAALACLLF   81 (375)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHhccCCchHHHHHHHHHHHHHHHHH
Confidence            345667777778888999999988899999999999999999998888 67799999999888654 4555556666667


Q ss_pred             HhcCCchhHHHH-HHHHhhhhhhhhhHHHHHhcccCCccchhH--HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccc
Q 013312          331 SISWSAWVPYAT-TAFSVLVVFATPSFRSIVSKQVGPNEQGKA--QGCISGISSFANIVSPLIFSPLTALFLSKGAPFNF  407 (445)
Q Consensus       331 ~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~--~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~  407 (445)
                      .+.++.+.++.. .+.+.+.+...|...++..|..|++.|+.+  .+......++|..++|.+.+.+.+..       ++
T Consensus        82 ~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~-------~~  154 (375)
T TIGR00899        82 AWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGF-------GF  154 (375)
T ss_pred             HhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhc-------cc
Confidence            777777665543 455666666778888888888887777654  67788888999999999999998864       33


Q ss_pred             chhHHHHHHHHHHHHHHHHHh
Q 013312          408 PGFSIMCIGLASMVAFIQSLM  428 (445)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~  428 (445)
                      .. .+.+.+.+.++..+..++
T Consensus       155 ~~-~f~~~~~~~~~~~~~~~~  174 (375)
T TIGR00899       155 TV-MFLTAALAFVLCGVLVWL  174 (375)
T ss_pred             HH-HHHHHHHHHHHHHHHHHH
Confidence            33 355555555555444444

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.44  E-value=8.7e-12  Score=117.76  Aligned_cols=145  Identities=14%  Similarity=0.131  Sum_probs=117.6

Q ss_pred             HHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHH
Q 013312          252 AVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICS  331 (445)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  331 (445)
                      .....+...........+|.+.++ +|.|+.+.++..+...++..++. +..|+++||+|||+.+..+.....++.+...
T Consensus        14 ~~~~~~~~~~~~~~~p~~~~i~~~-~~~s~~~~~~~~~~~~~~~~~~~-~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~   91 (394)
T PRK11652         14 VLLVAVGQMAQTIYVPAIADMARD-LNVREGAVQAVMAAYLLTYGLSQ-LFYGPLSDRVGRRPVILVGMSIFILGTLVAL   91 (394)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHH-HhhhhHHHhcCChHHHHHHHHHHHHHHHHHH
Confidence            333334344444445556766655 89999999999999999999998 7789999999999999999998888888887


Q ss_pred             hcCCchhHHHH-HHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013312          332 ISWSAWVPYAT-TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALF  398 (445)
Q Consensus       332 ~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~  398 (445)
                      +.++.+.+... .+.|++.+...+....+..|..++++++++.+..+....++..++|.+.+.+.+..
T Consensus        92 ~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~  159 (394)
T PRK11652         92 FAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLF  159 (394)
T ss_pred             HHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            77777665554 66677777777777888889899999999999999999999999999999887754

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.43  E-value=8.9e-12  Score=115.70  Aligned_cols=158  Identities=10%  Similarity=-0.112  Sum_probs=114.8

Q ss_pred             HhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHhcCCchh
Q 013312          259 GLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWV  338 (445)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (445)
                      +..+..+...+|.+.+| +|.|+.+.|++.+...++..+++ +..|++.||+|||+++..+......+.......++.+.
T Consensus         4 ~~~~~~~~~~lp~i~~~-~~~s~~~~g~~~s~~~~g~~i~~-~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~   81 (368)
T TIGR00903         4 QAIWVTFSPVLSLVAED-IDVSKEELGLLAITYPAAFLALT-IPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEW   81 (368)
T ss_pred             hHHHHHHHhhHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHH
Confidence            34455566677777766 89999999999999999999998 66799999999988776555554444332233245555


Q ss_pred             HHHH-HHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccchhHHHHHHH
Q 013312          339 PYAT-TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGL  417 (445)
Q Consensus       339 ~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~  417 (445)
                      ++.. ++.|++.+. .+......+|.+|+++|+++.++.+....+|..+++.+.+++.++.       +|... +.+.++
T Consensus        82 l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~-------gWr~~-f~~~~~  152 (368)
T TIGR00903        82 LLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAG-------GLQLL-IIPIAA  152 (368)
T ss_pred             HHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-------chHHH-HHHHHH
Confidence            5554 667888775 4555566688999999999999999999999999999999988754       44443 555455


Q ss_pred             HHHHHHHHHH
Q 013312          418 ASMVAFIQSL  427 (445)
Q Consensus       418 ~~~~~~~~~~  427 (445)
                      +.++..+..+
T Consensus       153 l~~~~~~~~~  162 (368)
T TIGR00903       153 VAAAGIILVL  162 (368)
T ss_pred             HHHHHHHHHH
Confidence            4444444333

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.43  E-value=3.3e-12  Score=118.53  Aligned_cols=168  Identities=23%  Similarity=0.240  Sum_probs=144.3

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchh-HhHHH
Q 013312            9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKA-MLTLP   87 (445)
Q Consensus         9 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~-~l~~~   87 (445)
                      .++...+..+.............|.+.++.       .+.+..+.++..+...++..++.++.|++.||+|||+ .+..+
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  248 (352)
T cd06174         176 LLLLLALAFFLLSFGYYGLLTYLPLYLQEV-------LGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIG  248 (352)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            344555556666677777778888887653       2445677899999999999999999999999999999 99999


Q ss_pred             HHHHHHHHHHHHhhcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhhhhh
Q 013312           88 LTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL  167 (445)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~  167 (445)
                      ..+..++.+.....++   .+...+..++.|+ +.+...+...+++.|..|+++|++.++..+....+|..++|.+.+.+
T Consensus       249 ~~~~~i~~~~~~~~~~---~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l  324 (352)
T cd06174         249 LLLAALGLLLLALAPS---LALLLVALLLLGF-GLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLL  324 (352)
T ss_pred             HHHHHHHHHHHHHhcc---HHHHHHHHHHHHH-HHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998   8889999999999 88888899999999999999999999999999999999999988763


Q ss_pred             ----chhhHHHHHHHHHHHHHHHH
Q 013312          168 ----STTSAFQAATIVSMLAAAYM  187 (445)
Q Consensus       168 ----~w~~~f~~~~~~~~i~~~~~  187 (445)
                          +|+..+.+.+++.++..+..
T Consensus       325 ~~~~~~~~~~~~~~~~~~i~~i~~  348 (352)
T cd06174         325 LDTGGYGGVFLILAALALLAALLL  348 (352)
T ss_pred             hcccCcchHHHHHHHHHHHHHHHh
Confidence                88999999988877765543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=99.42  E-value=5.5e-12  Score=113.65  Aligned_cols=373  Identities=14%  Similarity=0.130  Sum_probs=209.1

Q ss_pred             hhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhcccccc----ccCchhH
Q 013312            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSD----QYGRKAM   83 (445)
Q Consensus         8 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~D----r~Grr~~   83 (445)
                      +.+..+....+-..+++..-...+|+|+++.        +++....+++--+..+...+.+|+.|..+|    ||||||.
T Consensus        32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~~l--------Gvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRP  103 (498)
T KOG0637|consen   32 RKLISVASIAAGVQFGWALELSYLTPYLQSL--------GVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRP  103 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccHHHHHc--------CCCcccccccccccccccceecccccccccccccccccccc
Confidence            3444445555556677777777888887653        222234455555667888899999999999    5899887


Q ss_pred             hHH-HHHHHHHHHHHHHhhcCcch--------------hHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhh-HHH
Q 013312           84 LTL-PLTLSIIPLAILAYRRSISF--------------FYAYYALRTLTAMVCEGSINCLALAYVADNISERQRAS-AFG  147 (445)
Q Consensus        84 l~~-~~~~~~~~~~~~~~~~~~~~--------------~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~-~~~  147 (445)
                      ++. +.+..+++..+..++.+...              ....+++-.+.-+ +.-.......+++.|...++++.+ +++
T Consensus       104 fI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~-A~n~~qgp~ra~L~Dl~~~d~~~~~Ans  182 (498)
T KOG0637|consen  104 FILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDV-ANNTLQGPCRALLADLARGDAKKTRANS  182 (498)
T ss_pred             hHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHh-hhhhhhhhHHHHHHHhccChhhhhccch
Confidence            765 45677777778877755321              2334444445555 555666788999999998777766 999


Q ss_pred             HHHHHHhhhhhhhhhhhhhhchhh--HHHHHHHHHHHHHHHHHHhcc-------CCCCCCCCcCCccccchhhhcccccC
Q 013312          148 ILLGVLSASFVCGTLAARFLSTTS--AFQAATIVSMLAAAYMRVFLK-------DDVPNDDDDDLTRPIITEETEGVNQN  218 (445)
Q Consensus       148 ~~~~~~~~g~~~g~~l~~~~~w~~--~f~~~~~~~~i~~~~~~~~~~-------e~~~~~~~~~~~~~~~~~~~~~~~~~  218 (445)
                      .+....++|..+|..++.+.+|+-  +|.....+.+.+..+-..+..       ++.......      .++.....+.+
T Consensus       183 ~f~~f~avGnvLGY~~g~y~~~~~~~~Ft~~~~~~~~C~~~~~~~~~~v~L~~i~~~~~l~~~------~~~~~s~~~~~  256 (498)
T KOG0637|consen  183 VFSFFMAVGNVLGYALGSYLGLYKIFPFTLTTACDLYCANLKLCFFLEVTLLLIETSESLWYP------QEKPLSPKGTT  256 (498)
T ss_pred             hHHHHHHhcceeeeecccccCceEEeehHHHHHHHHHHHHHHHHHHHhhhhhheecccccccc------cccCCCCCccc
Confidence            999999999999999998888743  333333222222222111111       111100000      00000000000


Q ss_pred             CCCCCcccccccccchhHHHHHH-hhcchhhHHHHHHHHHHHhhhhhhHHHHHHHH-HhhcCCchhh-------------
Q 013312          219 ESNSPVKIPVCKKIPSIRDLICL-LRSSVTLSQAAVVAFFSGLSEGGMQASFLYFL-KAQFHFNKNQ-------------  283 (445)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~-------------  283 (445)
                            .+....+.....+.... ...+|.++.+++...+.+++...+..+...++ ++.++-|+..             
T Consensus       257 ------~~~~~~~~~~~~e~fG~~~~mpr~m~~L~i~~lltW~a~f~f~LF~TDfmG~~vy~GDp~a~~~S~a~~~Y~~G  330 (498)
T KOG0637|consen  257 ------ARSKSSKLPFLLEIFGALKVMPRPMRMLLIVTLLTWIAWFPFLLFDTDFMGREVYGGDPKADENSEAKKLYNAG  330 (498)
T ss_pred             ------ccccccCcchHHHHhchHhhCChhHHHHHHHHHHHHHHHHHHHHHHHHhcchHhhCCCCCCCcchhHHHHHHhc
Confidence                  00000011111122222 23456688888888888888888877777766 3344433321             


Q ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHhcCCchhHHH-HHHHH-------------
Q 013312          284 ---FADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYA-TTAFS-------------  346 (445)
Q Consensus       284 ---~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g-------------  346 (445)
                         -.+=+.++.+...+.+ ....++.||+|-|+.+..+.....++..+.....+.+.... ....|             
T Consensus       331 V~~G~~GL~ins~~lgi~S-~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~~~~~~~~~~~~G~~~~~~~~~p~~l  409 (498)
T KOG0637|consen  331 VRMGCLGLMLNSIVLGIYS-LLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAGILSSPLLTVPYGA  409 (498)
T ss_pred             cccchHHHHHHHHHHHHHH-HHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhhhHHHHHHHHhhcceeecchhcccHHH
Confidence               1233455666666666 56679999999665544444434444333333322221111 11111             


Q ss_pred             --------hhhhhhhhhHHHHHhcccCC--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 013312          347 --------VLVVFATPSFRSIVSKQVGP--NEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKG  402 (445)
Q Consensus       347 --------~~~~~~~~~~~~~~~~~~~~--~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~  402 (445)
                              .-....+...++..+....+  .-+|...|+.+....+.+++.....|.+.+..++.+
T Consensus       410 ~~~y~~~g~~~a~t~~~pf~~~s~~~~~sg~g~G~~~gvln~~I~ipQvivs~~~Gp~~~~~G~~~  475 (498)
T KOG0637|consen  410 LALYAILGIPLAITFSIPFALASIEIGNSGLGQGLDLGVLNCAIVIPQVLVSLGLGPLDQLFGGGN  475 (498)
T ss_pred             HHHHHHhCCccccccccccccccccccCccCCCCceeeeeeeeeeehhheeeccccchhhhcCCcc
Confidence                    11111222222222211111  234777788888888999999888899988874443

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.41  E-value=2.2e-11  Score=115.39  Aligned_cols=155  Identities=15%  Similarity=0.139  Sum_probs=123.1

Q ss_pred             hhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHhcCCchhHHHH
Q 013312          263 GGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYAT  342 (445)
Q Consensus       263 ~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (445)
                      .....-+|... +.+|.+..+.++..+...++..+++ +..|+++||+|||+.+..+..+..++.+.....++.+.++..
T Consensus        33 ~~~~p~l~~i~-~~~~~~~~~~~~~~s~~~~~~~~~~-~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~  110 (413)
T PRK15403         33 DLIQPGIINVV-RDFNADVSLAPASVSLYLAGGMALQ-WLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIA  110 (413)
T ss_pred             HhhccCHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHH-HhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            33444455544 4489999999999999999999998 778999999999999999999999998888888887766665


Q ss_pred             -HHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccchhHHHHHHHHHHH
Q 013312          343 -TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMV  421 (445)
Q Consensus       343 -~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  421 (445)
                       ++.|++.+...+....+..|.+|++++++++++.+....++..++|.+.+.+.++.       ++.. .|.+.+++.++
T Consensus       111 r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~-------gw~~-~f~~~~~~~~i  182 (413)
T PRK15403        111 RFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFV-------HWKV-LFAIIAVMGLI  182 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CHHH-HHHHHHHHHHH
Confidence             66787777666777788899999999999999999999999999999999888764       3333 35555555555


Q ss_pred             HHHHHH
Q 013312          422 AFIQSL  427 (445)
Q Consensus       422 ~~~~~~  427 (445)
                      +.+..+
T Consensus       183 ~~~~~~  188 (413)
T PRK15403        183 AFVGLL  188 (413)
T ss_pred             HHHHHH
Confidence            554433

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.41  E-value=9.5e-12  Score=118.83  Aligned_cols=149  Identities=12%  Similarity=0.068  Sum_probs=122.0

Q ss_pred             hHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHH
Q 013312          248 LSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINM  327 (445)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  327 (445)
                      +....+..+.............|.+. +.+|.|+.+.++..+...++..++. +..|++.||+|||+.+..+.....++.
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~s~~~~~~~~~~~~~~~~l~~-~~~g~l~dr~g~r~~l~~~~~~~~~~~   97 (426)
T PRK12307         20 LFSAWLGYVFDGFDFMLIFYIMYLIK-ADLGLTDMEGAFLATAAFIGRPFGG-ALFGLLADKFGRKPLMMWSIVAYSVGT   97 (426)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence            33344444444444444444455444 5589999999999999999999998 788999999999999999999999999


Q ss_pred             HHHHhcCCchhHHHH-HHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013312          328 FICSISWSAWVPYAT-TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALF  398 (445)
Q Consensus       328 ~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~  398 (445)
                      +...+.++.+.++.. .+.|++.+...+....++.|..|+++|+++.++......+|..+++.+.+.+.+..
T Consensus        98 ~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~  169 (426)
T PRK12307         98 GLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAY  169 (426)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccC
Confidence            888888887776665 77788888899999999999999999999999999999999999998888776653

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.41  E-value=2.6e-11  Score=114.23  Aligned_cols=133  Identities=10%  Similarity=-0.023  Sum_probs=117.1

Q ss_pred             hhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHhcCCchhHHHH
Q 013312          263 GGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYAT  342 (445)
Q Consensus       263 ~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (445)
                      ......+|...+| +|+|..+.++..+...++..+++ +..|++.||+|||+++..+..+.+++.+..++.++.+.++..
T Consensus        26 ~~~~~~lp~i~~~-~~~s~~~~g~~~s~~~~~~~l~~-~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~  103 (393)
T PRK09705         26 TSVGPLLPQLRQA-SGMSFSVAALLTALPVVTMGGLA-LAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSS  103 (393)
T ss_pred             hccchhHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHh-hhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHH
Confidence            4455667776655 89999999999999999999988 888999999999999999999999999999999988876665


Q ss_pred             -HHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013312          343 -TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALF  398 (445)
Q Consensus       343 -~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~  398 (445)
                       ++.|++.+...+....++.+.+| ++|++++|..+.....|..+++.+.+.+.++.
T Consensus       104 r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~  159 (393)
T PRK09705        104 ALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHS  159 (393)
T ss_pred             HHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence             77799999888888889998887 88999999999999999999999999887753

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.40  E-value=1.7e-11  Score=119.62  Aligned_cols=149  Identities=13%  Similarity=0.158  Sum_probs=124.0

Q ss_pred             hHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHH
Q 013312          248 LSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINM  327 (445)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  327 (445)
                      +..+.+..++..+.........|.+.+ .+|.|+.+.++..+...++..++. +..|++.||+|||+.+..+.++..++.
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~s~~~~~~~~~~~~~~~~~~~-~~~g~l~dr~g~r~~~~~~~~~~~~~~   99 (496)
T PRK03893         22 FSAAWLGYLLDGFDFVLITLVLTEVQG-EFGLTTVQAASLISAAFISRWFGG-LLLGAMGDRYGRRLAMVISIVLFSVGT   99 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence            334445555555555555556666554 489999999999999999999988 888999999999999999999999988


Q ss_pred             HHHHhcCCchhHHHH-HHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013312          328 FICSISWSAWVPYAT-TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALF  398 (445)
Q Consensus       328 ~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~  398 (445)
                      +...+.++.+.+... .+.|++.+...+....++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..
T Consensus       100 ~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~  171 (496)
T PRK03893        100 LACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVW  171 (496)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            888888777766554 67788888889999999999999999999999999999999999999999887754

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.40  E-value=2.5e-11  Score=116.18  Aligned_cols=130  Identities=13%  Similarity=0.106  Sum_probs=104.4

Q ss_pred             hHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHhcC----CchhHH
Q 013312          265 MQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISW----SAWVPY  340 (445)
Q Consensus       265 ~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  340 (445)
                      +....| ++++ .|.|+.+.++..+...++..++. +..|++.||+|||+.+..+.++..++.+.....+    +.+...
T Consensus        46 ~~~~~p-~~~~-~g~s~~~~g~~~~~~~~~~~~~~-~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  122 (438)
T TIGR00712        46 FALAMP-YLVE-QGFSKGELGFALSAISIAYGFSK-FIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMF  122 (438)
T ss_pred             HHhhhH-HHHH-cCCCHhHhHHHHHHHHHHHHHhh-hccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHH
Confidence            344444 5556 59999999999999999999988 8889999999999999988888888877665542    223333


Q ss_pred             H-HHHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013312          341 A-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTAL  397 (445)
Q Consensus       341 ~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~  397 (445)
                      . ..+.+++.+...+.....+.|.+|+++||+++|+.+....+++.++|.+.+...+.
T Consensus       123 ~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~  180 (438)
T TIGR00712       123 VLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAW  180 (438)
T ss_pred             HHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence            3 25567778888888888899999999999999999999999999999888766553

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.39  E-value=4.1e-12  Score=119.19  Aligned_cols=139  Identities=17%  Similarity=0.179  Sum_probs=115.8

Q ss_pred             HHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHhcCCc
Q 013312          257 FSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSA  336 (445)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (445)
                      ........+....|.+ ++.+|.|+.+.+++.+...++..++. +..|+++||+|||+.+..+..+..++.++..+.++.
T Consensus         6 ~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~-~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~   83 (379)
T TIGR00881         6 AYYLVRKNFALAMPYL-VEEIGLSKTDLGLLLSSFSIAYGISK-FVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSL   83 (379)
T ss_pred             HHHHhHHhhhhhhHHH-HHHhCCCHhHHHHHHHHHHHHHHhhh-hhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhH
Confidence            3334444555556654 45589999999999999999999988 788999999999999999999999999888888887


Q ss_pred             hhHHHH-HHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHH-HHHHHHHh
Q 013312          337 WVPYAT-TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPL-IFSPLTAL  397 (445)
Q Consensus       337 ~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~-~~g~l~~~  397 (445)
                      +..+.. .+.|++.+...+...+++.|.+|+++|+++.++.+....+|..++|. +.+.+.+.
T Consensus        84 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  146 (379)
T TIGR00881        84 WVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAEL  146 (379)
T ss_pred             HHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhc
Confidence            766665 67788888899999999999999999999999999999999999995 55544443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.39  E-value=1.8e-11  Score=114.98  Aligned_cols=164  Identities=14%  Similarity=0.091  Sum_probs=137.1

Q ss_pred             hhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHH
Q 013312            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP   87 (445)
Q Consensus         8 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~   87 (445)
                      |.++...+..++...+........|.+.+|        .+.+..+.|.+.+...++..+..++.|++.||+|+|+.+.++
T Consensus       205 ~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~--------~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~  276 (382)
T TIGR00902       205 PMNLRFLAAVCLIQGAHAAYYGFSAIYWQA--------AGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLIS  276 (382)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHH
Confidence            445566666677777777777888888754        355667889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHH-HHHhhhhhhhhhhhhh
Q 013312           88 LTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILL-GVLSASFVCGTLAARF  166 (445)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~g~~l~~~  166 (445)
                      .+...+.....+++++   .+.+++.+.+.|+ +.+...+....++.+. |+++|++..++++ ...++|..+||.++|.
T Consensus       277 ~~~~~~~~~~~~~~~~---~~~~~~~q~l~g~-~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~  351 (382)
T TIGR00902       277 AIACVGRWAIIGAIEA---FPLIFLLQILHCG-TFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGF  351 (382)
T ss_pred             HHHHHHHHHHHHhHhh---HHHHHHHHHHHHH-HHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999   8999999999999 8899999999999998 9999999999986 4678889999988887


Q ss_pred             h----chhhHHHHHHHHHHHHHH
Q 013312          167 L----STTSAFQAATIVSMLAAA  185 (445)
Q Consensus       167 ~----~w~~~f~~~~~~~~i~~~  185 (445)
                      +    ++ ..|++.+.++++..+
T Consensus       352 l~~~~g~-~~~~~~~~~~~~~~~  373 (382)
T TIGR00902       352 IYPTLGA-GTFVFMAIIAAAAFF  373 (382)
T ss_pred             HHHhccH-HHHHHHHHHHHHHHH
Confidence            5    53 557777766665443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.39  E-value=1.6e-11  Score=115.13  Aligned_cols=154  Identities=16%  Similarity=0.098  Sum_probs=118.3

Q ss_pred             hhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHhcCCchhHHH
Q 013312          262 EGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYA  341 (445)
Q Consensus       262 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (445)
                      .+......|.+.+ ++|.|+.+.++..+...++..+++ +..|+++||+|||+.+..+..+..++.+...+.++.+.++.
T Consensus        19 ~~~~~~~~~~~~~-~~~~s~~~~g~~~s~~~~~~~~~~-~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (377)
T TIGR00890        19 VYTWTLLAPPLGR-YFGVGVTAVAIWFTLLLIGLAMSM-PVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYL   96 (377)
T ss_pred             HhhhhhHHHHHHH-HhCCCHHHHHHHHHHHHHHHHHHh-hhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444455555554 589999999999999999999998 78899999999999999999999999988888888776666


Q ss_pred             H-HHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccchhHHHHHHHHHH
Q 013312          342 T-TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASM  420 (445)
Q Consensus       342 ~-~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (445)
                      . .+.|++.+...+.......+.+| ++|+++.+.......+|..+++.+.+.+.+..       ++.. .+.+.+++.+
T Consensus        97 ~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-------~~~~-~f~~~~~~~~  167 (377)
T TIGR00890        97 TYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLE-------GVPA-AFIYMGIIFL  167 (377)
T ss_pred             HHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcc-------cHHH-HHHHHHHHHH
Confidence            4 66788888777777777888776 67999999999999999888777777665532       2332 3455555544


Q ss_pred             HHHHHH
Q 013312          421 VAFIQS  426 (445)
Q Consensus       421 ~~~~~~  426 (445)
                      +.....
T Consensus       168 ~~~~~~  173 (377)
T TIGR00890       168 LVIVLG  173 (377)
T ss_pred             HHHHHH
Confidence            444333

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.38  E-value=5e-11  Score=114.60  Aligned_cols=168  Identities=18%  Similarity=0.180  Sum_probs=135.0

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHHH
Q 013312            9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL   88 (445)
Q Consensus         9 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~   88 (445)
                      .+..+....++..+....+...+|.+.++.       ++.+....|++.++..+|..++++..+++.+|+++++.+..+.
T Consensus       219 ~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~-------l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~  291 (524)
T PF05977_consen  219 PLRSVLLRSFLFNLFASAVWALLPLFARDV-------LGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLAS  291 (524)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHhhhHHHHHH-------hCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHH
Confidence            344444444444455555566788888753       3555678899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhhhh--
Q 013312           89 TLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF--  166 (445)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~--  166 (445)
                      +..+++.+..+++++   .+...+.-++.|+ +.....+..++.+.+..|++.|||++++++.....+..+|..+.|.  
T Consensus       292 ~~~a~~~~~lal~~~---~~~~~~~l~l~G~-~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la  367 (524)
T PF05977_consen  292 LLFALALLLLALSPS---FWLALIALFLAGA-AWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLA  367 (524)
T ss_pred             HHHHHHHHHHhcchH---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999   8888999999999 7778888889999999999999999999998888777777777666  


Q ss_pred             --hchhhHHHHHHHHHHHHHHHH
Q 013312          167 --LSTTSAFQAATIVSMLAAAYM  187 (445)
Q Consensus       167 --~~w~~~f~~~~~~~~i~~~~~  187 (445)
                        +|-+..+.+.++..++..++.
T Consensus       368 ~~~g~~~al~~a~~~lll~~~~~  390 (524)
T PF05977_consen  368 DHFGVRTALLIAGAALLLSALIA  390 (524)
T ss_pred             HHhCHHHHHHHHHHHHHHHHHHH
Confidence              477778877776544444433

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.38  E-value=1.9e-11  Score=117.87  Aligned_cols=132  Identities=11%  Similarity=0.027  Sum_probs=109.1

Q ss_pred             hhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHh-----cCCchh
Q 013312          264 GMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSI-----SWSAWV  338 (445)
Q Consensus       264 ~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~  338 (445)
                      .+....|.+.++ +|.+..+.|++.+...++..+++ +..|+++||+|+|+++..+.++.++..+.++.     .++.+.
T Consensus        47 ~~~~~~~~i~~~-~~~s~~~~g~~~s~~~~~~~~~~-~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (467)
T PRK09556         47 NFKAAQNDMIST-YGLSTTELGMIGLGFSITYGVGK-TLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGL  124 (467)
T ss_pred             ChhhhhHHHHHh-cCCCHHHHHHHHHHHHHHHHHHH-hhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHH
Confidence            344556665555 89999999999999999999998 78899999999999988887777666655544     355555


Q ss_pred             HHHH-HHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013312          339 PYAT-TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTAL  397 (445)
Q Consensus       339 ~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~  397 (445)
                      ++.. .+.|++.+...|....++.|.+|+++||+++|+.+....+|..+++.+..++.+.
T Consensus       125 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~  184 (467)
T PRK09556        125 MIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANY  184 (467)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHh
Confidence            5554 6678888888899999999999999999999999999999999999888777665

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.36  E-value=1.1e-10  Score=110.26  Aligned_cols=147  Identities=11%  Similarity=0.037  Sum_probs=120.6

Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHH
Q 013312          249 SQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMF  328 (445)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  328 (445)
                      ..+....+...+.........|.+ ++++|.|+.+.|++.+...++..+++ +..+++.||+|+|+.+..+..+.+++.+
T Consensus         6 ~~~~~~f~~~G~~~~~~~~l~~~~-~~~~~~s~~~~g~l~s~~~~g~~i~~-~~~g~l~~r~G~r~~~~~g~~l~~~g~~   83 (410)
T TIGR00885         6 ALITSLFALWGFANDITNPMVPQF-QQAFTLTAFQAALVQSAFYGGYFIMA-IPAAIFMKKLSYKAGILLGLFLYALGAF   83 (410)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence            344555555555555556677766 45589999999999999999999998 7789999999999999999999998887


Q ss_pred             HHHhc---CCchhHHHH-HHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013312          329 ICSIS---WSAWVPYAT-TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTAL  397 (445)
Q Consensus       329 ~~~~~---~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~  397 (445)
                      ++...   ++.+.+... ++.|++.+...+..+.++.+..|++++++..++.+...++|..++|.+.+.+...
T Consensus        84 l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~  156 (410)
T TIGR00885        84 LFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILS  156 (410)
T ss_pred             HHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            75443   344444443 6779999999999999999999999999999999999999999999999988643

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.35  E-value=7.9e-13  Score=119.40  Aligned_cols=177  Identities=10%  Similarity=0.135  Sum_probs=139.3

Q ss_pred             hHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHH
Q 013312          248 LSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINM  327 (445)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  327 (445)
                      +..++++..+...--+.+....+- .++.+|.++...|++.+...+..++.+ ++.|++.||++|++++.+|..+-.++.
T Consensus        35 l~il~~vnlmny~Dr~~iagv~~~-v~~~fni~~s~~Gll~~vf~v~~~i~s-Pl~gyLadryNR~~v~~vG~~iW~~Av  112 (493)
T KOG1330|consen   35 LVILCLVNLMNYADRYTIAGVLKE-VQTYFNISDSELGLLQTVFIVVFMIAS-PLFGYLADRYNRKRVIAVGIFIWTLAV  112 (493)
T ss_pred             HHHHHHHHHHHHhhhhhhhhhhHH-HHHhcCCCchhccchhHHHHHHHHHHH-HHHHHHHhhcCcceEEeeHHHHHHHHH
Confidence            334444444444444444443333 344589999999999999999999998 888999999999999999999999999


Q ss_pred             HHHHhcCCchhHHHH-HHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcc
Q 013312          328 FICSISWSAWVPYAT-TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFN  406 (445)
Q Consensus       328 ~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~  406 (445)
                      +..++..+.|.+.++ .+.|+|.....|..+++++|.+|.++|++++++.+....+|..+|-...+.+.++.       .
T Consensus       113 ~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~-------~  185 (493)
T KOG1330|consen  113 FASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLT-------F  185 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCc-------c
Confidence            999999888988887 88999999999999999999999999999999999999999999998888887765       2


Q ss_pred             cchhHHHHHHHHHHHHHHHHHhccCCC
Q 013312          407 FPGFSIMCIGLASMVAFIQSLMMSHTP  433 (445)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (445)
                      +..+.+...+++.++..++.+...+++
T Consensus       186 ~Wr~af~~~avl~vi~~~L~~~f~~eP  212 (493)
T KOG1330|consen  186 WWRWAFRGSAVLGVIVGLLVFLFVREP  212 (493)
T ss_pred             ceEEEEEeehHHHHHHHHHHHhhccCc
Confidence            122234555556665555555554443

>PRK10133 L-fucose transporter; Provisional

Probab=99.34  E-value=2.7e-10  Score=108.61  Aligned_cols=145  Identities=10%  Similarity=-0.001  Sum_probs=119.2

Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHH
Q 013312          249 SQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMF  328 (445)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  328 (445)
                      ..+.+..+...+.........|.+ ++.+|.|+.+.|+..+...++..+++ +..|++.||+|+|+.+..+..+..++.+
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~p~i-~~~~~~s~~~~gl~~~~~~~g~~i~~-~~~g~l~dr~G~r~~l~~g~~~~~~~~~  106 (438)
T PRK10133         29 ALLCSLFFLWAVANNLNDILLPQF-QQAFTLTNFQAGLIQSAFYFGYFIIP-IPAGILMKKLSYKAGIITGLFLYALGAA  106 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence            344555566666666667778877 66699999999999999999999998 7789999999999999999999999887


Q ss_pred             HH---HhcCCchhHHHH-HHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013312          329 IC---SISWSAWVPYAT-TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLT  395 (445)
Q Consensus       329 ~~---~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~  395 (445)
                      ++   ..+++.+.+... ++.|++.+...+..+.++.+..|+++++...+..+....+|..++|.+.+.+.
T Consensus       107 l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~  177 (438)
T PRK10133        107 LFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            65   345566655554 77799999999999999988777666667899999999999999999887765

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.34  E-value=1.3e-10  Score=107.35  Aligned_cols=159  Identities=11%  Similarity=0.113  Sum_probs=128.5

Q ss_pred             hHHHHHHHHHhhcCCchhh-HHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHhcCCchhHHHH-
Q 013312          265 MQASFLYFLKAQFHFNKNQ-FADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYAT-  342 (445)
Q Consensus       265 ~~~~~~~~~~~~~g~~~~~-~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  342 (445)
                      ...+...++.+.+|+++.+ .|.+......+..+.. +.+|+++||+|.|+++..+.+...+..++.+++++.+.+.+. 
T Consensus        44 n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~q-Ip~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R  122 (511)
T TIGR00806        44 GESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVL-VPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLME  122 (511)
T ss_pred             hHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHH-HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555676679999999 9999999999999998 888999999999999999999999999999998887766666 


Q ss_pred             HHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccchhHHHHHHHHHHHH
Q 013312          343 TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVA  422 (445)
Q Consensus       343 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (445)
                      +++|++.+... ....++.+.+|+++|+++.|+.+....+|.++++++.+++ ..+ +..   .+..+ ..+......++
T Consensus       123 ~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll-~s~-gWr---~y~~L-n~Isl~s~~~a  195 (511)
T TIGR00806       123 VFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLL-VTL-GWI---SYSTL-NIISLVFMTFS  195 (511)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhc-Cch---hHHHH-HHHHHHHHHHH
Confidence            88999999999 9999999999999999999999999999999999999994 333 111   12222 23344445555


Q ss_pred             HHHHHhccC
Q 013312          423 FIQSLMMSH  431 (445)
Q Consensus       423 ~~~~~~~~~  431 (445)
                      +++.+++++
T Consensus       196 ~~~a~~LP~  204 (511)
T TIGR00806       196 VFLALFLKR  204 (511)
T ss_pred             HHHHHhCCC
Confidence            666666653

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.33  E-value=1.9e-10  Score=110.55  Aligned_cols=122  Identities=16%  Similarity=0.148  Sum_probs=97.5

Q ss_pred             HHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHhcC----CchhHHHH
Q 013312          267 ASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISW----SAWVPYAT  342 (445)
Q Consensus       267 ~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~  342 (445)
                      ...| ++.+. |.++.+.++..+...++..+++ +..|+++||+|+|+++..+.++..++.+.+.+.+    +.+..+..
T Consensus        50 ~~~p-~l~~~-g~s~~~~g~~~~~~~i~~~~~~-~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  126 (452)
T PRK11273         50 LAMP-YLVEQ-GFSRGDLGFALSGISIAYGFSK-FIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVL  126 (452)
T ss_pred             HhhH-HHHHc-CCCHHHHHHHHHHHHHHHHHHH-hhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHH
Confidence            3445 55565 9999999999999999999998 8889999999999999999998888887776653    33333333


Q ss_pred             -HHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHH
Q 013312          343 -TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIF  391 (445)
Q Consensus       343 -~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~  391 (445)
                       .+.|++.+...+.....+.+.+|+++|+++.|+.+....+|+.+.+.+.
T Consensus       127 ~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~  176 (452)
T PRK11273        127 LFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLF  176 (452)
T ss_pred             HHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence             6668888877887788888999999999999999999998875544343

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.32  E-value=1e-10  Score=110.58  Aligned_cols=175  Identities=9%  Similarity=-0.012  Sum_probs=122.6

Q ss_pred             chhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHH
Q 013312          245 SVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAAC  324 (445)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  324 (445)
                      +|.++......++...+......++|.|+++++|.++.+.|...+...+...+++ +..|+++||+|||+.+..+.....
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~-~~~G~l~Dr~grr~~~~~~~~~~~   79 (396)
T TIGR00882         1 NTNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQ-PLFGLISDKLGLKKHLLWIISGLL   79 (396)
T ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCcHHHHHHHHHHHH
Confidence            3667777888888888888889999999998899999999999999999999999 788999999999998877665554


Q ss_pred             HHHHHH---HhcCC----ch-hHHH-HHHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013312          325 INMFIC---SISWS----AW-VPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLT  395 (445)
Q Consensus       325 ~~~~~~---~~~~~----~~-~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~  395 (445)
                      +.....   ...+.    .+ .... ..+.+++.+...+....+..+..+  +++...|......++|..++|.+.|.+.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~~~g~l~  157 (396)
T TIGR00882        80 VLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCASIAGILF  157 (396)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHHHHhhhh
Confidence            433321   11111    11 1111 244466666667777777766433  3456778888889999999999998876


Q ss_pred             HhhhcCCCCcccchhHHHHHHHHHHHHHHHHHhccC
Q 013312          396 ALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMSH  431 (445)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (445)
                      +.        ++. ..|.+.+++.++..+..+..++
T Consensus       158 ~~--------~~~-~~f~~~~~~~~~~~~~~~~~~~  184 (396)
T TIGR00882       158 SI--------DPQ-IVFWLGSGFALILMLLLMFAKP  184 (396)
T ss_pred             cc--------Cch-HHHHHHHHHHHHHHHHHHHhCC
Confidence            53        222 2355555555554444444333

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=99.31  E-value=8.1e-08  Score=90.54  Aligned_cols=359  Identities=11%  Similarity=0.110  Sum_probs=204.4

Q ss_pred             hhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHh-hhhccccccccCchhHhHH
Q 013312            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVM-MPVIGNLSDQYGRKAMLTL   86 (445)
Q Consensus         8 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~-~~~~G~l~Dr~Grr~~l~~   86 (445)
                      +.+....+..|+..+++++.-|.=..+..       +..+.....+.++-+...+...+. .++.+++++|++|++++-.
T Consensus         7 ~k~~~~~l~fF~il~~Y~iLR~lKD~lvv-------~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~   79 (472)
T TIGR00769         7 KKFLPLFLMFFCILFNYTILRDTKDTLVV-------TAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYT   79 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhheee-------cccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHH
Confidence            34555666667777777766554433321       111222245677777777777776 8999999999999999988


Q ss_pred             HHHHHHHHHHHHHhh--cCcch--------------------------hHHHHHHHHHhhhccchhHHH-HHHHHHhcCC
Q 013312           87 PLTLSIIPLAILAYR--RSISF--------------------------FYAYYALRTLTAMVCEGSINC-LALAYVADNI  137 (445)
Q Consensus        87 ~~~~~~~~~~~~~~~--~~~~~--------------------------~~~l~~~r~l~G~~~~g~~~~-~~~~~i~~~~  137 (445)
                      ....+.....++++.  |+.+.                          .|..-+..+...+ -+....+ ...++.+|.+
T Consensus        80 ~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~el-w~~~vvS~lFW~fandi~  158 (472)
T TIGR00769        80 VISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAEL-WGSVVLSLLFWGFANQIT  158 (472)
T ss_pred             HHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHhcC
Confidence            877777777666654  11100                          1222233334444 2233333 7789999999


Q ss_pred             CccchhhHHHHHHHHHhhhhhhhhhhhhhhc------------h----hhHHHHHHHHHHHHHHHHHHhccCCCCCCCCc
Q 013312          138 SERQRASAFGILLGVLSASFVCGTLAARFLS------------T----TSAFQAATIVSMLAAAYMRVFLKDDVPNDDDD  201 (445)
Q Consensus       138 ~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~~------------w----~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~  201 (445)
                      +.+|-.|.++++..+.++|.++|+.+...+.            |    +..+.+.++...+. +.+...+.+....+++.
T Consensus       159 t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~-~~~~~~l~~~~~~~~~~  237 (472)
T TIGR00769       159 TIDEAKRFYALFGLGANVALIFSGRTIKYFSKLRASLGPGVDGWHVSLKNLMVIVICSGLAI-ILLYWWVNRNVLTDPRS  237 (472)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccChHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcccCCccc
Confidence            9999999999999999999999998776642            2    12333333333333 33333443322111110


Q ss_pred             CCccccchhhhcccccCCCCCCcccccccccchhHHHHHHhhcchhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCch
Q 013312          202 DLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNK  281 (445)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  281 (445)
                      .+              . +.   ++++++.+....+.++.+.++|.++.+.+...+++......+...-...++.+ -|+
T Consensus       238 ~~--------------~-~~---~~~k~k~k~~~~es~k~i~~S~yL~~ia~~vi~y~~~~nlve~~~k~~v~~~~-p~~  298 (472)
T TIGR00769       238 YN--------------P-AL---KEKKVKPKMSTMESLKFLVSSPYILDLALLVIAYGISINLVEVTWKSKLKAQY-PSP  298 (472)
T ss_pred             cc--------------h-hh---ccccCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCH
Confidence            00              0 00   11112224467788888899999988888888887777777665666666644 344


Q ss_pred             hh----HHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHH---HHHHHHhcCCc----------hhHHHHHH
Q 013312          282 NQ----FADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACI---NMFICSISWSA----------WVPYATTA  344 (445)
Q Consensus       282 ~~----~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~----------~~~~~~~~  344 (445)
                      .+    .|.+....++..++.+ +..+++.+|+|-+....+.-++..+   +++.+....+.          .......+
T Consensus       299 ~~~~~f~g~~~~~~gi~tl~~~-l~~~~l~~~~Gw~~~a~i~Pii~lit~~~Ff~~~~f~~~~~~~~~~l~~~pl~l~v~  377 (472)
T TIGR00769       299 NEYSAFMGDFSTWTGVVSVTMM-LLSGNVIRKYGWLTAALITPLVMLLTGVAFFSLIFFGGPAAPLVAKLGMTPLLLAVY  377 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhccChHHHHHH
Confidence            33    3444556666666666 4448999999987655443333333   33322222211          11111111


Q ss_pred             HHhhh-hh-------hhhhHHHHHhcccCCccchhHHHHHHHHH-HHHHHHHHHHHHHHH
Q 013312          345 FSVLV-VF-------ATPSFRSIVSKQVGPNEQGKAQGCISGIS-SFANIVSPLIFSPLT  395 (445)
Q Consensus       345 ~g~~~-~~-------~~~~~~~~~~~~~~~~~~g~~~g~~~~~~-~~g~~i~~~~~g~l~  395 (445)
                      .|... ..       ..-...=..--..++|.|.++=+....+. ++|-..|..+...+.
T Consensus       378 ~g~~~~v~~k~~kYsl~dp~kEmly~pld~e~K~K~Ka~iD~v~~r~Gks~gs~i~~~l~  437 (472)
T TIGR00769       378 VGAIQNILSKSTKYSLFDATKEMAYIPLDEEQKVKGKAAIDVVAARLGKSGGALIQQGLL  437 (472)
T ss_pred             HHHHHHHHHHHhhhccccHHHHHhcccCCHHHHHHhHhhhhhhhhhhhhHHHHHHHHHHH
Confidence            11111 11       11111112222356788888888777766 477777776555433

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.29  E-value=5.7e-10  Score=106.60  Aligned_cols=139  Identities=10%  Similarity=-0.016  Sum_probs=101.0

Q ss_pred             HHHHHhhhhhhHHHHHHHHHhhcC---Cchhh---HHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHH
Q 013312          255 AFFSGLSEGGMQASFLYFLKAQFH---FNKNQ---FADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMF  328 (445)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~g---~~~~~---~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  328 (445)
                      .++...-... ..+...++.++++   .+..+   .+..++...++..+++ ++.|+++||+|||+.+..+.....++.+
T Consensus        31 ~~~~~~d~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~-~~~G~l~Dr~Grr~~l~~~~~~~~~~~~  108 (432)
T PRK10406         31 NLVEWFDFYV-YSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGG-WLFGRIADKHGRKKSMLISVCMMCFGSL  108 (432)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence            3333333333 4444445555553   44443   3334455555555877 7889999999999999999999999999


Q ss_pred             HHHhcCCch--------hHHHH-HHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013312          329 ICSISWSAW--------VPYAT-TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLT  395 (445)
Q Consensus       329 ~~~~~~~~~--------~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~  395 (445)
                      ..++.++..        .+... ++.|++.+...+...+++.|..|+++||+..++.+.....|..+++.+...+.
T Consensus       109 ~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~  184 (432)
T PRK10406        109 VIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQ  184 (432)
T ss_pred             HHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888877643        23333 67799999999999999999999999999999888888888888776655544

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.27  E-value=4.4e-11  Score=105.97  Aligned_cols=148  Identities=16%  Similarity=0.184  Sum_probs=128.9

Q ss_pred             cCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHhcCCchhHHHH-HHHHhhhhhhhhh
Q 013312          277 FHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYAT-TAFSVLVVFATPS  355 (445)
Q Consensus       277 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~  355 (445)
                      .+-+..++|+++....+...+.+ .+.|.+.||+|+|..+.+|+.++..+.+++++.++.+..+++ .+-|++.......
T Consensus       101 ~~~e~~~iG~LFaskA~~qllvn-p~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~ts  179 (464)
T KOG3764|consen  101 LDRENTQIGLLFASKALVQLLVN-PFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTS  179 (464)
T ss_pred             ccccccchhHHHHHHHHHHHHhc-ccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhh
Confidence            35566789999999999999999 777899999999999999999999999999999999887777 8889999999999


Q ss_pred             HHHHHhcccCCcc-chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccchhHHHHHHHHHHHHHHHHHhccCCC
Q 013312          356 FRSIVSKQVGPNE-QGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMSHTP  433 (445)
Q Consensus       356 ~~~~~~~~~~~~~-~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (445)
                      ..++++|.+|+|+ |++++|+.-....+|-.+||..+|.++|.. ++.       ++|++.++++++...+.+...+.+
T Consensus       180 glamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~-Gk~-------aPFlVL~~v~Lld~~L~l~vi~p~  250 (464)
T KOG3764|consen  180 GLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFA-GKS-------APFLVLAIVLLLDGALQLLVIEPT  250 (464)
T ss_pred             hHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhc-CCc-------CcHHHHHHHHHHHHHHHHheeCcc
Confidence            9999999999875 699999999999999999999999999986 333       356788877777777666655543

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.27  E-value=6.1e-11  Score=111.92  Aligned_cols=160  Identities=13%  Similarity=0.049  Sum_probs=115.7

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHHHH
Q 013312           10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLT   89 (445)
Q Consensus        10 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~   89 (445)
                      +.......+............+|.+.++.       .+.+..+.+...+...++..++.++.|+++||+|||+.+.....
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~  293 (394)
T TIGR00883       221 FLLGLGLVIATTTTFYLITTYLPTYLTQT-------LGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTV  293 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH
Confidence            44445555555566666677788887543       24445667888888999999999999999999999998775554


Q ss_pred             HHHHHH-H-HHHhh--cCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHH-HHHHhhhhhhhhhhh
Q 013312           90 LSIIPL-A-ILAYR--RSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGIL-LGVLSASFVCGTLAA  164 (445)
Q Consensus        90 ~~~~~~-~-~~~~~--~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~-~~~~~~g~~~g~~l~  164 (445)
                      +..+.. . ...+.  ++   .+.+....++.|+ +.+...+...+++.|.+|+++|+++.++. +....+|..++|.++
T Consensus       294 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~  369 (394)
T TIGR00883       294 LAALLAVPLLMALLDSGS---FTLFFFLVLGLAL-IGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIA  369 (394)
T ss_pred             HHHHHHHHHHHHHhcCCc---hHHHHHHHHHHHH-HHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHH
Confidence            443332 2 22222  34   6667777888888 77777888999999999999999999874 555677888888888


Q ss_pred             hhh----c-hhhHHHHHHHHH
Q 013312          165 RFL----S-TTSAFQAATIVS  180 (445)
Q Consensus       165 ~~~----~-w~~~f~~~~~~~  180 (445)
                      +.+    + |+..++......
T Consensus       370 g~l~~~~g~~~~~~~~~~~~~  390 (394)
T TIGR00883       370 AALVAMTGDWYAIGYYLAALA  390 (394)
T ss_pred             HHHHHHcCcchhHHHHHHHHH
Confidence            764    5 777666655443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.26  E-value=4.7e-11  Score=115.81  Aligned_cols=147  Identities=14%  Similarity=0.073  Sum_probs=108.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHHHHHHHHHHHHHHh---hcCcc-----hhHHHHHHHHHhhh
Q 013312           48 LAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAY---RRSIS-----FFYAYYALRTLTAM  119 (445)
Q Consensus        48 ~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~---~~~~~-----~~~~l~~~r~l~G~  119 (445)
                      .+....++......++..++.++.|+++||+|||+.+..+..+.+++.++..+   .....     ....+....+..+.
T Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (481)
T TIGR00879       316 VSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAF  395 (481)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHH
Confidence            33355678888889999999999999999999999999988888887776662   11110     12233333333333


Q ss_pred             ccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhhhh----hchhhHHHHHHHHHHHHHHHHHHhccCCC
Q 013312          120 VCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF----LSTTSAFQAATIVSMLAAAYMRVFLKDDV  195 (445)
Q Consensus       120 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~----~~w~~~f~~~~~~~~i~~~~~~~~~~e~~  195 (445)
                       ......+....++.|.+|+++|++++++.+....+|..++|.+.+.    .+|++.|++.++++++..+...+..||++
T Consensus       396 -~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~  474 (481)
T TIGR00879       396 -FAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETK  474 (481)
T ss_pred             -HHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCC
Confidence             2223336677788999999999999999999999999999987765    37999999888887777777666667654

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK09952 shikimate transporter; Provisional

Probab=99.26  E-value=6.3e-10  Score=106.37  Aligned_cols=146  Identities=10%  Similarity=-0.009  Sum_probs=105.0

Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHhhc--CCchhhHHHHHH-----HHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHH
Q 013312          250 QAAVVAFFSGLSEGGMQASFLYFLKAQF--HFNKNQFADLML-----IAGLAGTISQLLFMPLLAPILGEAKLLSLGLFA  322 (445)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~g~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  322 (445)
                      ...+..++...-...+....|.+..+.+  +.++.+ +...+     ...++..+++ ++.|++.||+|||+.+..+..+
T Consensus        26 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~-~~~G~l~Dr~Grr~~l~~~~~~  103 (438)
T PRK09952         26 GSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAM-GTLAAFATFGVGFLFRPLGG-VVFGHFGDRLGRKRMLMLTVWM  103 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHH-HHHHHHHHHHHHHHHHhhHH-HHHHHHHHhhccHHHHHHHHHH
Confidence            3333444443333333334455555544  566653 54432     2334455666 6779999999999999999999


Q ss_pred             HHHHHHHHHhcCCch--------hHHHH-HHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHH
Q 013312          323 ACINMFICSISWSAW--------VPYAT-TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSP  393 (445)
Q Consensus       323 ~~~~~~~~~~~~~~~--------~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~  393 (445)
                      ..++.++.++.++.+        .+... .+.|++.+...+....++.|..|+++||...+..+....+|..+++.+.+.
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~  183 (438)
T PRK09952        104 MGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSL  183 (438)
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999988765        23333 677999999999999999999999999999999988888888888877776


Q ss_pred             HHHh
Q 013312          394 LTAL  397 (445)
Q Consensus       394 l~~~  397 (445)
                      +...
T Consensus       184 l~~~  187 (438)
T PRK09952        184 ISMM  187 (438)
T ss_pred             HHHh
Confidence            6543

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.26  E-value=8e-10  Score=104.60  Aligned_cols=168  Identities=13%  Similarity=0.122  Sum_probs=122.1

Q ss_pred             HHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhh-----cchh-HHHHHHHHHHH
Q 013312          252 AVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPIL-----GEAK-LLSLGLFAACI  325 (445)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~-~~~~~~~~~~~  325 (445)
                      +..++............+|.|+++ .|+|.+++|++......  .+.. ++.|+++||+     |||| .+..+....++
T Consensus         5 ~~l~~~~~~~~~~~~~~~~~~l~~-~g~~~~~ig~~~~~~~~--~~~~-~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l   80 (402)
T PRK11902          5 LLLGFASGLPLALTSGTLQAWMTV-EGLDIQTIGFFSLVGQA--YIFK-FLWAPLMDRYTPPLLGRRRGWLLLTQVGLAA   80 (402)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHH--HHHH-HHHHHHHHcccccCCCcchhHHHHHHHHHHH
Confidence            445566666777778899999998 59999999998665554  4556 7778999999     6665 67777888877


Q ss_pred             HHHHHHhcC---CchhHHHH-HHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 013312          326 NMFICSISW---SAWVPYAT-TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSK  401 (445)
Q Consensus       326 ~~~~~~~~~---~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~  401 (445)
                      +...+.+.+   +.+.+... ++.+.......+...+++.|.+|+|+|+++.++......+|..+++.+.+.+.+...  
T Consensus        81 ~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~--  158 (402)
T PRK11902         81 SIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVL--  158 (402)
T ss_pred             HHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhccc--
Confidence            777766653   23433333 455677777889999999999999999999999999999999999999988877421  


Q ss_pred             CCCcccchhHHHHHHHHHHHHHHHHHhcc
Q 013312          402 GAPFNFPGFSIMCIGLASMVAFIQSLMMS  430 (445)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (445)
                          ++.. .+.+.+++.++........+
T Consensus       159 ----gw~~-~f~i~a~~~l~~~l~~~~~~  182 (402)
T PRK11902        159 ----GWGN-TYLLMAGLMLAGALTTLWAP  182 (402)
T ss_pred             ----CHHH-HHHHHHHHHHHHHHHHHhcC
Confidence                2222 35555555554444434443

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.24  E-value=3.9e-10  Score=105.97  Aligned_cols=161  Identities=11%  Similarity=0.112  Sum_probs=124.6

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHHH
Q 013312            9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL   88 (445)
Q Consensus         9 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~   88 (445)
                      .++.+.+..++............|.+.+|        .+.+..+.|.+.+...++..+..++.|++.||+|+|+.+..+.
T Consensus       206 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--------~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~  277 (382)
T PRK11128        206 TVWRFLLCVSLLQGSHAAYYGFSAIYWQA--------AGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSA  277 (382)
T ss_pred             hHHHHHHHHHHHHHHhHhHHHHHHHHHHH--------CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence            34444555555555555556666777643        2455567888888999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHH-HHHhhhhhhhhhhhhhh
Q 013312           89 TLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILL-GVLSASFVCGTLAARFL  167 (445)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~g~~l~~~~  167 (445)
                      +..+++.+..+..++   .+.+++..++.|+ +.+...+....++.+. +++++++..+..+ ...++|..+||.++|.+
T Consensus       278 ~~~~~~~~~~~~~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l  352 (382)
T PRK11128        278 ICGVVRWGLMGSTTA---LPWLIVIQILHCG-TFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFL  352 (382)
T ss_pred             HHHHHHHHHHHhhhh---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999998888888888   8888999999999 8888888889988887 5667788888886 55677888889888875


Q ss_pred             ----chhhHHHHHHHHHHHH
Q 013312          168 ----STTSAFQAATIVSMLA  183 (445)
Q Consensus       168 ----~w~~~f~~~~~~~~i~  183 (445)
                          ++ ..|+..+.+.++.
T Consensus       353 ~~~~g~-~~~~~~~~~~~~~  371 (382)
T PRK11128        353 YQHLGA-GVFWVMALVALPA  371 (382)
T ss_pred             HHhccH-HHHHHHHHHHHHH
Confidence                54 4566666555444

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.24  E-value=1.7e-08  Score=93.80  Aligned_cols=308  Identities=14%  Similarity=0.068  Sum_probs=193.7

Q ss_pred             HHHHHHHHHHhhhhccccccccCchhHhHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcC
Q 013312           57 QAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADN  136 (445)
Q Consensus        57 ~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~  136 (445)
                      .++-.....+.+++.+.+.|+.|.|+.+.++...+..-.+.+-+-+.    +.+++.-.+.|+ |.+..+...-.+++|.
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~N~----y~~yfssallG~-Gaallw~GqG~ylt~~  130 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFPNS----YYLYFSSALLGF-GAALLWTGQGGYLTSN  130 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcch----HHHHHHHHHhhh-hHHheecccceehhhc
Confidence            66677788888999999999999999999999999888877777665    778899999999 8899898899999999


Q ss_pred             CCccchhhHHHHHHHHHhhhhhhhhhhhhhh------------chh-h----------HHHHHHHHHHHHHHHHHHhccC
Q 013312          137 ISERQRASAFGILLGVLSASFVCGTLAARFL------------STT-S----------AFQAATIVSMLAAAYMRVFLKD  193 (445)
Q Consensus       137 ~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~------------~w~-~----------~f~~~~~~~~i~~~~~~~~~~e  193 (445)
                      .+++++.+..++.-.....+.++|...-..+            +.+ .          ...+.+++..+..+...-...+
T Consensus       131 st~~tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~~~  210 (461)
T KOG3098|consen  131 STRETIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFDFL  210 (461)
T ss_pred             CChhhHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhheeec
Confidence            9999999999999988888888886554332            111 1          1111111111111111111111


Q ss_pred             CCCCCCCcCCccccchhhhcccccCCCCCCcccccccccchhHHHHHHhhcchhhHHHHHHHHHHHhhhhhhHHHHHHHH
Q 013312          194 DVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFL  273 (445)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (445)
                      +.+.....                   .   +..+....+.++...+.+ +++++..+....+..+..........|..+
T Consensus       211 p~~~~~~~-------------------~---~~~~~~~~~~l~~~~~l~-~~~~ml~L~~~f~~tG~~~Sf~~~iypt~i  267 (461)
T KOG3098|consen  211 PSKDVVNC-------------------K---SSSETSFSELLKLTFKLL-KTPKMLLLFPFFFYTGLETSFWISIYPTCI  267 (461)
T ss_pred             Cccchhhh-------------------h---hhccccHHHHHHHHHHHh-cCHhHHHHHHHHHHHHHHHHHHHhccchhh
Confidence            11000000                   0   000011122334444444 455555555555544444444445555543


Q ss_pred             Hh--hcCCchh-hHHHHHHHHHHHHHHHHHHHHHHhhh---hhcchhHHHHHHHHHHHHHHHHHhcCC------------
Q 013312          274 KA--QFHFNKN-QFADLMLIAGLAGTISQLLFMPLLAP---ILGEAKLLSLGLFAACINMFICSISWS------------  335 (445)
Q Consensus       274 ~~--~~g~~~~-~~g~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  335 (445)
                      .-  ..+.+.. ..+......+.+.++++ ...+.+.|   ++|+++.+.++..+..++.++.....+            
T Consensus       268 ~ft~~~~~n~~~~~ai~~~~~g~g~v~~g-~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~  346 (461)
T KOG3098|consen  268 SFTRKLGSNTTYLIAIYSIGIGLGEVIGG-LDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPP  346 (461)
T ss_pred             hhhhhccCcchhHHHHHHHHHhHHHHHHH-HHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccc
Confidence            22  1233332 34555566667777766 44456665   457788888888777777666544211            


Q ss_pred             ------c-hhHHHHHHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 013312          336 ------A-WVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPL  394 (445)
Q Consensus       336 ------~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l  394 (445)
                            . ...++..+.|++........+.++.+.. +++|.++.++...-+.++..++-......
T Consensus       347 ~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~~  411 (461)
T KOG3098|consen  347 LLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPYL  411 (461)
T ss_pred             cccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence                  1 1222347778888888899999999988 58899999998888888887766555544

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.24  E-value=4.9e-10  Score=106.66  Aligned_cols=176  Identities=16%  Similarity=0.216  Sum_probs=141.9

Q ss_pred             HhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCch--hHh
Q 013312            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRK--AML   84 (445)
Q Consensus         7 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr--~~l   84 (445)
                      .|.+...+++.++..-+.+.+......|.++       +++.+..+...+.-+..+...+++.++|++.||+|.|  +++
T Consensus       280 ~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~-------~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l  352 (477)
T PF11700_consen  280 LRQLFLFLIAYFLYSDGVNTIISFAGIYATE-------VLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTL  352 (477)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHH
Confidence            4566667777787777778788888888764       4566667777788888999999999999999999999  898


Q ss_pred             HHHHHHHHHHHHHHHh--------hcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhh
Q 013312           85 TLPLTLSIIPLAILAY--------RRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSAS  156 (445)
Q Consensus        85 ~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g  156 (445)
                      +.++..+.+..+...+        .++   .+.+.+.-++.|+ ..|..++...++.+|..|+++.+..+|++....-..
T Consensus       353 ~~~l~~~~~i~~~g~~G~~~~~~g~~~---~~~f~~~a~~~G~-~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~s  428 (477)
T PF11700_consen  353 LISLILWIIIPLYGLFGFWPSFFGLKS---PWEFWVLAVLIGL-FMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKAS  428 (477)
T ss_pred             HHHHHHHHHHHHHHHHHhhhcccCccc---HHHHHHHHHHHHH-HhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHH
Confidence            8888877555555444        445   6888889999999 889999999999999999999999999999999999


Q ss_pred             hhhhhhhhhhh-----chhhHHHHHHHHHHHHHHHHHHhccCC
Q 013312          157 FVCGTLAARFL-----STTSAFQAATIVSMLAAAYMRVFLKDD  194 (445)
Q Consensus       157 ~~~g~~l~~~~-----~w~~~f~~~~~~~~i~~~~~~~~~~e~  194 (445)
                      ..+||.+.+.+     +.|+.+....++.++.+++. ..++++
T Consensus       429 s~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll-~~v~~~  470 (477)
T PF11700_consen  429 SWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILL-FFVDVE  470 (477)
T ss_pred             HHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH-hhccch
Confidence            99999988875     36888887777765555444 555553

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.23  E-value=3.8e-10  Score=109.57  Aligned_cols=152  Identities=7%  Similarity=-0.082  Sum_probs=111.4

Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHhc---------CCc---hhHHHH-HH
Q 013312          278 HFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSIS---------WSA---WVPYAT-TA  344 (445)
Q Consensus       278 g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~---~~~~~~-~~  344 (445)
                      +.++.+.++..+...++..+++ ++.|+++||+|||+.+..+..+..++.+..++.         ++.   +.++.. ++
T Consensus        51 ~~~~~~~~~~~s~~~ig~~~~~-~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l  129 (479)
T PRK10077         51 SAANSLLGFCVASALIGCIIGG-ALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRII  129 (479)
T ss_pred             cCChhHHHHHHHHHHHHHHHHH-HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHH
Confidence            8888999999999999999998 788999999999999999988888877766542         111   222333 77


Q ss_pred             HHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-CCcccchhHHHHHHHHHHHHH
Q 013312          345 FSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKG-APFNFPGFSIMCIGLASMVAF  423 (445)
Q Consensus       345 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  423 (445)
                      .|++.+...+...++++|.+|+++||++.++.+....+|..+++.+.+.+.....+.. ..+++.. .+.+.++..++..
T Consensus       130 ~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~-~f~~~~~~~~~~~  208 (479)
T PRK10077        130 GGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRY-MFASEAIPALLFL  208 (479)
T ss_pred             HhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHH-HHHHHHHHHHHHH
Confidence            7999999999999999999999999999999999999999988776655543211111 1123333 3555555555544


Q ss_pred             HHHHhccC
Q 013312          424 IQSLMMSH  431 (445)
Q Consensus       424 ~~~~~~~~  431 (445)
                      +..+.+++
T Consensus       209 ~~~~~l~~  216 (479)
T PRK10077        209 MLLYFVPE  216 (479)
T ss_pred             HHHHcCCC
Confidence            44444444

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.23  E-value=5.1e-10  Score=100.57  Aligned_cols=131  Identities=18%  Similarity=0.113  Sum_probs=108.0

Q ss_pred             HHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHhcCCch---hHHHH
Q 013312          266 QASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAW---VPYAT  342 (445)
Q Consensus       266 ~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~  342 (445)
                      ..-+...+++.+|+|+.|.+++.++..+.+.+.+ +..+.+.||+|.|+....+.++..+-.+.+.++...+   .++.+
T Consensus        33 ~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallR-l~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~  111 (417)
T COG2223          33 FSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLR-LPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVI  111 (417)
T ss_pred             HHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHH-HHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHH
Confidence            3344445557799999999999999999999999 6668999999999999999999998888888866444   55554


Q ss_pred             HHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013312          343 TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALF  398 (445)
Q Consensus       343 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~  398 (445)
                      .++....+..+......+++.+|+|++|.++|++. .+|+|..+...+.+.+....
T Consensus       112 gll~G~~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~  166 (417)
T COG2223         112 GLLLGLAGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAF  166 (417)
T ss_pred             HHHHhcccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHH
Confidence            33333344567788889999999999999999998 99999999999999888876

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.22  E-value=1.5e-10  Score=114.64  Aligned_cols=137  Identities=13%  Similarity=0.144  Sum_probs=113.1

Q ss_pred             hhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHhcC------
Q 013312          261 SEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISW------  334 (445)
Q Consensus       261 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  334 (445)
                      ...++....-..+++++++++.+.|++.+...++..+.. +..+++.||.+||+.+.++.++.+++.+++++.+      
T Consensus        47 ~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~-i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y  125 (633)
T TIGR00805        47 LYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLI-IFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRY  125 (633)
T ss_pred             HHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHH-HHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCc
Confidence            333343333344556699999999999999999999988 6778999999999999999999999988877642      


Q ss_pred             -------------------------------------------C-ch-hHHHH-HHHHhhhhhhhhhHHHHHhcccCCcc
Q 013312          335 -------------------------------------------S-AW-VPYAT-TAFSVLVVFATPSFRSIVSKQVGPNE  368 (445)
Q Consensus       335 -------------------------------------------~-~~-~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~  368 (445)
                                                                 + .+ .+++. ++.|++.+...+...+++.|.+|+++
T Consensus       126 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~  205 (633)
T TIGR00805       126 SYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKN  205 (633)
T ss_pred             cccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccc
Confidence                                                       0 12 22233 77899999999999999999999999


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013312          369 QGKAQGCISGISSFANIVSPLIFSPLTALF  398 (445)
Q Consensus       369 ~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~  398 (445)
                      |+...|+.+....+|..+|+.+++.+.+.+
T Consensus       206 ~~~~~~i~~~~~~iG~~lG~llgg~l~~~~  235 (633)
T TIGR00805       206 SPLYIGILESIAVFGPAFGYLLGSFCLQIY  235 (633)
T ss_pred             cHHHHHHHHHHHHhhhHHHHHHHHHHHhcc
Confidence            999999999999999999999999988764

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.22  E-value=1.1e-10  Score=92.60  Aligned_cols=133  Identities=18%  Similarity=0.235  Sum_probs=102.8

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHhcCCchhHHHH-HHHHhhhhhhhhhHHHHHhcccCCcc
Q 013312          290 IAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYAT-TAFSVLVVFATPSFRSIVSKQVGPNE  368 (445)
Q Consensus       290 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~  368 (445)
                      ...++..++. +..+++.||++||+.+..+.....++.+.....++.+..... .+.+++.+...+....+..|..|+++
T Consensus         6 ~~~~~~~~~~-~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~   84 (141)
T TIGR00880         6 GYALGQLIYS-PLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEE   84 (141)
T ss_pred             eehhHHHHHH-hhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhh
Confidence            3456666777 777899999999999998888888888777777776655554 67788888888999999999999999


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccchhHHHHHHHHHHHHHHHHHhccC
Q 013312          369 QGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMSH  431 (445)
Q Consensus       369 ~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (445)
                      |+++.+..+....++..++|.+.+.+.+..       ++.. .+.+.+.+.+++.+......+
T Consensus        85 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-------~~~~-~~~~~~~~~~~~~~~~~~~~~  139 (141)
T TIGR00880        85 RGVALGLMSAGIALGPLLGPPLGGVLAQFL-------GWRA-PFLFLAILALAAFILLAFLLP  139 (141)
T ss_pred             hhHHHHHHHHhHHHHHHHhHHhHHHHhccc-------chHH-HHHHHHHHHHHHHHHHhhcCC
Confidence            999999999999999999999999988754       2222 344555555555555544443

>TIGR00896 CynX cyanate transporter

Probab=99.22  E-value=4.9e-10  Score=104.22  Aligned_cols=132  Identities=14%  Similarity=0.114  Sum_probs=108.0

Q ss_pred             hhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHhcCCchhHHHH
Q 013312          263 GGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYAT  342 (445)
Q Consensus       263 ~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (445)
                      ......+|.+.++ +|.|+.+.++..+...++..++. +..|++.||+|+|+.+..+..+..++.+.. ..++.+.++..
T Consensus        17 ~~~~~~lp~l~~~-~~~s~~~~g~~~s~~~~~~~~~~-~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~   93 (355)
T TIGR00896        17 TSVGPLLPQIRSA-LGMSFSVAGLLTALPVLCFAVLA-PLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAG   93 (355)
T ss_pred             ccCcccHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHH-HhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHH
Confidence            3345567776665 89999999999999999999998 888999999999999999888877777665 55565555443


Q ss_pred             -HHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013312          343 -TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALF  398 (445)
Q Consensus       343 -~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~  398 (445)
                       .+.|++.+...+.....+.|..| ++|+++.+..+....+|..+++.+.+.+.+..
T Consensus        94 ~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~  149 (355)
T TIGR00896        94 TALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHS  149 (355)
T ss_pred             HHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence             66678777777777778888776 68999999999999999999999999887764

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.21  E-value=1.7e-10  Score=111.52  Aligned_cols=121  Identities=12%  Similarity=0.052  Sum_probs=105.1

Q ss_pred             hcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHhc--CCchhHHHH-HHHHhhhhhh
Q 013312          276 QFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSIS--WSAWVPYAT-TAFSVLVVFA  352 (445)
Q Consensus       276 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~g~~~~~~  352 (445)
                      ++++++.+.|.+.+...++..+++ +..|++.||+|+|+.+..+.++..++.++..+.  .+.+.++.. ++.|++.+..
T Consensus        70 ~~~~s~~~~g~~~s~~~~~~~~~~-~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~  148 (465)
T TIGR00894        70 NFKWSGALQGLILSSHFYGQIIIQ-IPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSV  148 (465)
T ss_pred             CCCCCHHHhhHHHHHHHHHHHHHH-cchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccc
Confidence            478999999999999999999998 788999999999999999888877776665443  344444443 7789999999


Q ss_pred             hhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013312          353 TPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTAL  397 (445)
Q Consensus       353 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~  397 (445)
                      .|....++.|.+|+++|+++.|+.+....+|..++|.+.+.+.+.
T Consensus       149 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~  193 (465)
T TIGR00894       149 SPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCES  193 (465)
T ss_pred             hhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999998875

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.21  E-value=1.7e-09  Score=105.48  Aligned_cols=142  Identities=14%  Similarity=0.018  Sum_probs=109.5

Q ss_pred             HHHHHHhhhhhhHHHHHHHHHhh----cCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHH
Q 013312          254 VAFFSGLSEGGMQASFLYFLKAQ----FHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFI  329 (445)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  329 (445)
                      ..+....-........|..-.+.    .+.++.+.+++.+...++.+++. +..+++.||+|||+.+..+.++..++.++
T Consensus        24 ~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~-~~~g~l~d~~Grr~~~~~~~~~~~v~~~~  102 (502)
T TIGR00887        24 GFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQ-LFFGWLADKLGRKRVYGMELIIMIIATVA  102 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhccHHHHHHHHHHHHHHHHH
Confidence            33444333333444445443321    23456677888999999999988 78899999999999999998888888877


Q ss_pred             HHhcCC------chhHHHH-HHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013312          330 CSISWS------AWVPYAT-TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTA  396 (445)
Q Consensus       330 ~~~~~~------~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~  396 (445)
                      ..+.++      .+.++.. ++.|++.+...+....+++|.+|+++||++.++.+....+|..+++.+...+..
T Consensus       103 ~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~  176 (502)
T TIGR00887       103 SGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLA  176 (502)
T ss_pred             HHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777654      2333343 777999999999999999999999999999999999999999999988877654

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.20  E-value=6.3e-09  Score=100.73  Aligned_cols=166  Identities=13%  Similarity=0.089  Sum_probs=115.6

Q ss_pred             HHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHH-HHHHHHHHhhhhccccccccCchhHhHHHHHHHHHHH
Q 013312           17 VFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQA-IIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPL   95 (445)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s-~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~   95 (445)
                      .++...+........+.+..+       +.+.+..+.|+... ...++..++.++.|+++||+|||+.+..+.++.+++.
T Consensus       231 ~~l~~~~~~~~~~~~~~~l~~-------~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~  303 (491)
T PRK11010        231 IVLYKLGDAFAMSLTTTFLIR-------GVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSN  303 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-------hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            344444444444445555543       23566677888874 5568999999999999999999998877666555544


Q ss_pred             HHH---Hhh-cCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhhhh----h
Q 013312           96 AIL---AYR-RSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF----L  167 (445)
Q Consensus        96 ~~~---~~~-~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~----~  167 (445)
                      +..   +.. ++   .+.+...-++..+ +.+...+...++..+..+++.+++..++.+...++|..+++.+++.    .
T Consensus       304 l~~~~l~~~~~~---~~~l~~~~~l~~~-~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~  379 (491)
T PRK11010        304 AGYWLLSITDKN---LYSMGAAVFFENL-CGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAH  379 (491)
T ss_pred             HHHHHHHhcccc---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            332   232 23   4555556666665 5555667778889999999999999999999999998777666655    4


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHhccCC
Q 013312          168 STTSAFQAATIVSMLAAAYMRVFLKDD  194 (445)
Q Consensus       168 ~w~~~f~~~~~~~~i~~~~~~~~~~e~  194 (445)
                      ||+..|.+.++++++..+... .++++
T Consensus       380 G~~~~f~~~~~~~l~~l~~~~-~~~~~  405 (491)
T PRK11010        380 GWPTFYLFSVAAAVPGLLLLL-VCRQT  405 (491)
T ss_pred             ChHHHHHHHHHHHHHHHHHHH-HHHhc
Confidence            899999988888877655554 34543

>TIGR00901 2A0125 AmpG-related permease

Probab=99.19  E-value=1.5e-09  Score=101.03  Aligned_cols=165  Identities=11%  Similarity=0.097  Sum_probs=113.9

Q ss_pred             hhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhh-----cchhH-HHHHHHHHHHHHHHHHhcCC--
Q 013312          264 GMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPIL-----GEAKL-LSLGLFAACINMFICSISWS--  335 (445)
Q Consensus       264 ~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~-~~~~~~~~~~~~~~~~~~~~--  335 (445)
                      ......|.+.++ .|+|..+.|+.... .+...+ . ++.|++.||+     ||||. +..+.+..++....+.+..+  
T Consensus         6 ~~~~~~~~~~~~-~g~s~~~~g~~~~~-~~~~~~-~-~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~   81 (356)
T TIGR00901         6 LVGNTLPYWLRS-KNVSLKTIGFFSLV-GLPYSL-K-FLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPST   81 (356)
T ss_pred             hHHhHHHHHHHH-cCCCHHHHHHHHHH-HHHHHH-H-HHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcch
Confidence            345567888877 79999999988654 444444 5 6778999997     78775 56667777776666666532  


Q ss_pred             -chhHHHH-HHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccchhHHH
Q 013312          336 -AWVPYAT-TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIM  413 (445)
Q Consensus       336 -~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~  413 (445)
                       .+.+... .+.+.+.....+...+++.|.+|+|+|+++.|+......+|..+++.+.+.+.++.+.....-+.....+.
T Consensus        82 ~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~  161 (356)
T TIGR00901        82 DLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFF  161 (356)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHH
Confidence             2223222 44566677778889999999999999999999999999999999999999998876321100011223456


Q ss_pred             HHHHHHHHHHHHHHhccCC
Q 013312          414 CIGLASMVAFIQSLMMSHT  432 (445)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~  432 (445)
                      +.+++.++.....++..|+
T Consensus       162 i~ai~~l~~~~~~~~~~~e  180 (356)
T TIGR00901       162 WTALLILPGLLVTLFLAKE  180 (356)
T ss_pred             HHHHHHHHHHHHHHHhccC
Confidence            6666666655555544343

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.19  E-value=7.1e-10  Score=102.00  Aligned_cols=181  Identities=15%  Similarity=0.186  Sum_probs=148.0

Q ss_pred             cchhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcC----CchhhHHHHHHHHHHHHHHHHHHHHHHhhhh-hcchhHHHH
Q 013312          244 SSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFH----FNKNQFADLMLIAGLAGTISQLLFMPLLAPI-LGEAKLLSL  318 (445)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~  318 (445)
                      ++|.++.++..-+.--++++++...+..|+....+    +|++++.-++..++...-... +++||++|| +|+|+.+..
T Consensus        19 ~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~-i~GG~laDr~LG~~~tI~l   97 (498)
T COG3104          19 QPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTP-IIGGWLADRVLGTRRTIVL   97 (498)
T ss_pred             CCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHH-HHHHHHHHHhcchhHHHHH
Confidence            45677788888899999999999999999988888    999987777777766666655 888999998 599999999


Q ss_pred             HHHHHHHHHHHHHhcC--CchhHHH-HHHHHhhhhhhhhhHHHHHhcccCCc--cchhHHHHHHHHHHHHHHHHHHHHHH
Q 013312          319 GLFAACINMFICSISW--SAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPN--EQGKAQGCISGISSFANIVSPLIFSP  393 (445)
Q Consensus       319 ~~~~~~~~~~~~~~~~--~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~--~~g~~~g~~~~~~~~g~~i~~~~~g~  393 (445)
                      |.++..++.+.++..+  ....+++ ..+..+|.|..-+...+++.|.+|++  +|-..+++..+..++|+.++|.+.++
T Consensus        98 Gail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~  177 (498)
T COG3104          98 GAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGL  177 (498)
T ss_pred             HHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHH
Confidence            9999999999998874  4444444 46677999999999999999999865  36778888889999999999999999


Q ss_pred             HHHhhhcCCCCcccchhHHHHHHHHHHHHHHHHHhccCCC
Q 013312          394 LTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMSHTP  433 (445)
Q Consensus       394 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (445)
                      +.++.       ++. ..|..+++-...+++..+..+++.
T Consensus       178 ~~~~~-------g~~-~gF~~aavGm~~gl~~f~~~~r~~  209 (498)
T COG3104         178 LAINY-------GWH-VGFGLAAVGMIIGLVIFLLGRRHV  209 (498)
T ss_pred             HHHhh-------CHH-HHHHHHHHHHHHHHHHHHHccchh
Confidence            99986       333 347777777788888777766543

>PTZ00207 hypothetical protein; Provisional

Probab=99.19  E-value=3.7e-09  Score=102.32  Aligned_cols=129  Identities=8%  Similarity=0.088  Sum_probs=97.8

Q ss_pred             hhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHhc------CCch
Q 013312          264 GMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSIS------WSAW  337 (445)
Q Consensus       264 ~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~  337 (445)
                      .+..+.| .+++.+|+|..+.+.+.+.... ..... +..|++.||+|+|+++.++.++..++.++.++.      .+.+
T Consensus        45 ~fsv~s~-~L~~~lgls~~~l~~i~svg~~-~g~~~-lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~  121 (591)
T PTZ00207         45 AFNLISG-AMQARYNLTQRDLSTITTVGIA-VGYFL-LPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVV  121 (591)
T ss_pred             HHHHHHH-HHHHHhCcCHHHHHHHHHHHHH-HHHHH-HHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHH
Confidence            3444444 4566699999999988776333 33444 467999999999999999999999999888886      3455


Q ss_pred             hHHHH-HHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013312          338 VPYAT-TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTA  396 (445)
Q Consensus       338 ~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~  396 (445)
                      .+.+. .+.|++.+...+.....+.+.+| ++||++.|+......+|..+.+.+...+..
T Consensus       122 ~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~  180 (591)
T PTZ00207        122 RLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS  180 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55444 66688887778888888888887 789999999999999999865555544443

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.18  E-value=1.3e-09  Score=117.42  Aligned_cols=154  Identities=12%  Similarity=0.112  Sum_probs=116.8

Q ss_pred             hcchhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCch--hhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHH
Q 013312          243 RSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNK--NQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGL  320 (445)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  320 (445)
                      ++++.++.+++..++..+........+..++...++.+.  ...++..+...+...+++ +..|+++||+|||+++..+.
T Consensus         6 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~G~l~Dr~grk~~l~~~~   84 (1146)
T PRK08633          6 LKIIGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLS-SPAGFLADKFSKNRVIRIVK   84 (1146)
T ss_pred             hhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHh-hhHhhhcccccHHHHHHHHH
Confidence            345566666666666666665555555555544455543  346777888888888888 77899999999999998887


Q ss_pred             HHHHHHHHHHH---hcCCchhHHHH-HHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013312          321 FAACINMFICS---ISWSAWVPYAT-TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTA  396 (445)
Q Consensus       321 ~~~~~~~~~~~---~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~  396 (445)
                      ++..+..++..   ...+.+.+++. ++.|++.+...+...+++.|.+|+++|++++|+.+....+|..+||.+++++.+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~  164 (1146)
T PRK08633         85 LFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFE  164 (1146)
T ss_pred             HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            66554444333   23455555544 777899999999999999999999999999999999999999999999999987


Q ss_pred             h
Q 013312          397 L  397 (445)
Q Consensus       397 ~  397 (445)
                      .
T Consensus       165 ~  165 (1146)
T PRK08633        165 S  165 (1146)
T ss_pred             h
Confidence            6

>PRK15075 citrate-proton symporter; Provisional

Probab=99.18  E-value=1.6e-09  Score=103.54  Aligned_cols=147  Identities=14%  Similarity=0.038  Sum_probs=109.0

Q ss_pred             hHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHH-HHH-----HHHHHHHHHHHHHHhhhhhcchhHHHHHHH
Q 013312          248 LSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLM-LIA-----GLAGTISQLLFMPLLAPILGEAKLLSLGLF  321 (445)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~-~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  321 (445)
                      ....++..++...-...+....|...++ ++.++.+.+... +..     .+...+++ +..|++.||+|||+.+..+..
T Consensus        17 ~~~~~~~~~~~~~d~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~ig~-~~~G~l~Dr~Grr~~l~~~~~   94 (434)
T PRK15075         17 ILRVTSGNFLEMFDFFLFGFYATAIAKT-FFPAGNEFASLMLTFAVFGAGFLMRPLGA-IVLGAYIDRVGRRKGLIVTLS   94 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCCchHHHHHHHHHHHHHHHHhhhHH-HHHHHHhhhhchHHHHHHHHH
Confidence            3334555555555555666666665555 788777654332 221     11223455 677999999999999999999


Q ss_pred             HHHHHHHHHHhcCCchh--------HHHH-HHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHH
Q 013312          322 AACINMFICSISWSAWV--------PYAT-TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFS  392 (445)
Q Consensus       322 ~~~~~~~~~~~~~~~~~--------~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g  392 (445)
                      +..++..+.++.++.+.        ++.. ++.|++.+...+....++.|.+|+++|+++.++.+...+++..+++.+.+
T Consensus        95 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~  174 (434)
T PRK15075         95 IMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGY  174 (434)
T ss_pred             HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999988887653        2233 67788888888888899999999999999999999999999888888877


Q ss_pred             HHHH
Q 013312          393 PLTA  396 (445)
Q Consensus       393 ~l~~  396 (445)
                      .+..
T Consensus       175 ~l~~  178 (434)
T PRK15075        175 LLNQ  178 (434)
T ss_pred             HHHH
Confidence            7654

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=99.15  E-value=3.7e-08  Score=90.00  Aligned_cols=323  Identities=15%  Similarity=0.100  Sum_probs=175.7

Q ss_pred             HHHHHHHHHHHHHHhhhhccccccccCchhHhHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHhhhccchhHHHHHHHH
Q 013312           53 SGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAY  132 (445)
Q Consensus        53 ~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~  132 (445)
                      .|.+.-+..+...+..+...+..+|+..+.=...+..+..++.++.+++++   .+.=+++-.+.++ +.|..-....++
T Consensus        61 t~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~---v~~~l~Gv~las~-ssg~GE~tfL~l  136 (402)
T PF02487_consen   61 TGAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPS---VWVRLLGVVLASL-SSGLGEVTFLSL  136 (402)
T ss_pred             chHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccc---hhHHHHHHHHHhh-hhhhhHHHHHHH
Confidence            355666677788888888888999988765566677788889999999999   8888889999998 777666666665


Q ss_pred             HhcCCCccchhhHHHHHHHHHhhhhhhhhhhhhh---h--chhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCcccc
Q 013312          133 VADNISERQRASAFGILLGVLSASFVCGTLAARF---L--STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPI  207 (445)
Q Consensus       133 i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~---~--~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~  207 (445)
                      .. .+++    ...+.++.+.+.+.++|+..-..   +  +-|..+.+...+.++..+..++.+|+++++.... +.+..
T Consensus       137 t~-~y~~----~~l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~f~~L~~~~~~~~~~-~~~~~  210 (402)
T PF02487_consen  137 TH-FYGK----SSLSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSYFFLLPSPPTNRPYQ-ESESE  210 (402)
T ss_pred             HH-hcCc----cccccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHhhccccccCCCc-ccCCC
Confidence            44 4443    24566666666666666543322   2  3477777777666555555555666543322111 11000


Q ss_pred             chhhhcccccCCCCCCcccccccccchhHHHHHHhhcchhhHHHHHHHHHHHhhhhhh-HHHHHHHH-HhhcCCchhhHH
Q 013312          208 ITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGM-QASFLYFL-KAQFHFNKNQFA  285 (445)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~g~~~~~~g  285 (445)
                       +.. +++..+++.++ .+.....+...++.++..   |.+....+-.++..+..+.+ ....|... .+...-...+.-
T Consensus       211 -~~~-~~~~~~~~~~~-~~~~~~~~~~~~~k~~~~---k~Ll~ymiPL~lVY~aEY~InqGv~~tl~fp~~~~~~r~~Y~  284 (402)
T PF02487_consen  211 -DEA-EDDLLESETSE-SKPDSSSKLSFKEKLKRL---KPLLWYMIPLFLVYFAEYFINQGVAPTLLFPNSFFSPRDQYR  284 (402)
T ss_pred             -Ccc-ccccccccccc-ccccccchhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhchHHHhcCCccCCCHHHHHH
Confidence             000 00000000000 001111112223322222   21221222222233333333 22223322 111122233455


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHH---HHhcCCchhHHHH-HHHHhhhhhhhhhHHHHHh
Q 013312          286 DLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFI---CSISWSAWVPYAT-TAFSVLVVFATPSFRSIVS  361 (445)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~  361 (445)
                      ++...+.++..+.+ -....+  |+++.+++.+-..+-.+.+++   +-+.++.|.++.. +..|+..|..+......+.
T Consensus       285 ~Y~~~YQ~GVFISR-SS~~~~--rir~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF~~I~  361 (402)
T PF02487_consen  285 WYQLLYQLGVFISR-SSLPFF--RIRRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNTFYRIS  361 (402)
T ss_pred             HHHHHHHHHHhhhh-cceeee--ehhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            66666776665554 111111  333333332222222222211   2224556655543 5568888999998899999


Q ss_pred             cccCCccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 013312          362 KQVGPNEQGKAQGCISGISSFANIVSPLIFSPL  394 (445)
Q Consensus       362 ~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l  394 (445)
                      |..|+++|-.++|.......+|..++..++=++
T Consensus       362 ~~~~~~~REFslg~vsvsds~GI~lAgll~l~l  394 (402)
T PF02487_consen  362 EEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL  394 (402)
T ss_pred             hcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            999999999999999999998888877655433

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.15  E-value=2.5e-09  Score=114.89  Aligned_cols=155  Identities=15%  Similarity=0.052  Sum_probs=106.5

Q ss_pred             hcchhhHHHHHHHHHHHhhhhhhHHHHHHH----HHhhcCCc-hhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHH
Q 013312          243 RSSVTLSQAAVVAFFSGLSEGGMQASFLYF----LKAQFHFN-KNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLS  317 (445)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~g~~-~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  317 (445)
                      ++++.++.++...++..+..+.....++.+    +.+..+.+ ....++..+...+...+.+ ++.|+++||++||+++.
T Consensus         8 ~~~~~f~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~-~~~G~laDr~~rk~~~~   86 (1140)
T PRK06814          8 MKSRRFAPLFWTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFS-ALAGQLADKYDKAKLAK   86 (1140)
T ss_pred             hhccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHh-hhHHhhhhhccHHHHHH
Confidence            344556656666666555544332222222    22212222 2346777777888888888 78899999999999753


Q ss_pred             HHHH--HHHHHHHHH-HhcCCchhHHHH-HHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHH
Q 013312          318 LGLF--AACINMFIC-SISWSAWVPYAT-TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSP  393 (445)
Q Consensus       318 ~~~~--~~~~~~~~~-~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~  393 (445)
                      ....  +.......+ ...++.+.+++. ++.|++.+...|...+++.+.+|++++++++|+.++...+|..+||.++|+
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~  166 (1140)
T PRK06814         87 ILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGL  166 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence            3211  121122222 223566666654 777999999999999999999999999999999999999999999999999


Q ss_pred             HHHhh
Q 013312          394 LTALF  398 (445)
Q Consensus       394 l~~~~  398 (445)
                      +.+..
T Consensus       167 l~~~~  171 (1140)
T PRK06814        167 ATISG  171 (1140)
T ss_pred             HHhcc
Confidence            98864

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.14  E-value=4.2e-09  Score=99.76  Aligned_cols=184  Identities=11%  Similarity=0.024  Sum_probs=129.6

Q ss_pred             hHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhh----hhcchhHHHH-HHHH
Q 013312          248 LSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAP----ILGEAKLLSL-GLFA  322 (445)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~-~~~~  322 (445)
                      +..+....+..++++.....+.+.|+++ +|.++...+.+.....+...+.+ ++.|+++|    |+|||+.... +...
T Consensus         6 li~~~~~~~Giq~~~~l~~~~l~~yl~~-lg~~~~~~~~i~~~~~l~~~i~~-Pi~G~lSDr~~sr~GRRrp~il~g~~~   83 (477)
T TIGR01301         6 LLRVASVAAGVQFGWALQLSLLTPYVQE-LGIPHAWASIIWLCGPLSGLLVQ-PLVGYLSDRCTSRFGRRRPFIAAGAAL   83 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHH-hHeeehhcCCCCCCCChHHHHHHHHHH
Confidence            3344555566667777778888888866 89999999999999999999999 78899999    5999998766 4666


Q ss_pred             HHHHHHHHHhcCCch-----------------hHHH-HHHHHhhhhhhhhhHHHHHhcccCCccc--hhHHHHHHHHHHH
Q 013312          323 ACINMFICSISWSAW-----------------VPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQ--GKAQGCISGISSF  382 (445)
Q Consensus       323 ~~~~~~~~~~~~~~~-----------------~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~--g~~~g~~~~~~~~  382 (445)
                      ..+++.++.+..+.+                 .... ..+..++.....+...+++.|.+|+++|  +.+.+..+....+
T Consensus        84 ~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~l  163 (477)
T TIGR01301        84 VAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAI  163 (477)
T ss_pred             HHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHH
Confidence            666767776654421                 1111 1334557777788889999999998865  6799999999999


Q ss_pred             HHHHHHHHHHHH--HHhhh--cCCC-Cc--ccchhHHHHHHHHHHHHHHHHHhccCCC
Q 013312          383 ANIVSPLIFSPL--TALFL--SKGA-PF--NFPGFSIMCIGLASMVAFIQSLMMSHTP  433 (445)
Q Consensus       383 g~~i~~~~~g~l--~~~~~--~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (445)
                      |+.+|+.+.+..  .+.+.  +.+. ..  ......|.+.+++.+++.......-||+
T Consensus       164 G~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~  221 (477)
T TIGR01301       164 GNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKEN  221 (477)
T ss_pred             HHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeecc
Confidence            999999988865  22211  0000 00  0122346777777777776666554443

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.14  E-value=3.5e-09  Score=98.91  Aligned_cols=176  Identities=14%  Similarity=0.184  Sum_probs=138.0

Q ss_pred             hhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHH
Q 013312            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP   87 (445)
Q Consensus         8 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~   87 (445)
                      +.+...++..++...+...+....+.+.+|..       +.+....|.+.++..+.-...-...+++..|+|.|+++.++
T Consensus       207 ~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~g-------g~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a  279 (400)
T PF03825_consen  207 PRFLVFLLAAFLIGISHAAYYTFFSIYLQELG-------GYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLA  279 (400)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-------cchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            34556667778888888888889999987641       13334567777788888888889999999999999999999


Q ss_pred             HHHHHHHHHHHHhh-cCcchhHHH----HHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHH-Hhhhhhhhh
Q 013312           88 LTLSIIPLAILAYR-RSISFFYAY----YALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGV-LSASFVCGT  161 (445)
Q Consensus        88 ~~~~~~~~~~~~~~-~~~~~~~~l----~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~-~~~g~~~g~  161 (445)
                      .+.+++=..+++.. ++   .+..    +....+.|+ +-+..+.+...++.+..|++.|+++.++++.. .++|..+|.
T Consensus       280 ~~~~~vR~~l~a~~~~~---~~~~~~~~~l~q~lhG~-tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~  355 (400)
T PF03825_consen  280 LVAYAVRWLLYAYFSDP---WPFIVALQLLGQLLHGL-TFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGS  355 (400)
T ss_pred             HHHHHHHHHHHHHhcCC---cHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHH
Confidence            99999999999988 44   3332    333567999 88999999999999999999999999998864 689999999


Q ss_pred             hhhhhh----------chhhHHHHHHHHHHHHHHHHHHhccCC
Q 013312          162 LAARFL----------STTSAFQAATIVSMLAAAYMRVFLKDD  194 (445)
Q Consensus       162 ~l~~~~----------~w~~~f~~~~~~~~i~~~~~~~~~~e~  194 (445)
                      .++|.+          .|...+.+.+.+.++..++.++..||+
T Consensus       356 ~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~  398 (400)
T PF03825_consen  356 LIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKPK  398 (400)
T ss_pred             HHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence            988874          344556667766666666666666664

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.13  E-value=2.1e-09  Score=101.32  Aligned_cols=164  Identities=10%  Similarity=0.010  Sum_probs=116.9

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHH-HHHHhhhhccccccccCchhHhHHHH
Q 013312           10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGL-GTLVMMPVIGNLSDQYGRKAMLTLPL   88 (445)
Q Consensus        10 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l-~~~~~~~~~G~l~Dr~Grr~~l~~~~   88 (445)
                      ++......++...+........+.+.+|        .+.+..+.|++...... ...++.++.|++.||+|+|+.+..+.
T Consensus       210 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~--------~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~  281 (390)
T TIGR02718       210 AWSLLALALLSAMTAVSGFGLSKLYLVD--------AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGV  281 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHh--------cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            4444555556666666666677777754        36666788988887764 66677899999999999999998877


Q ss_pred             HHHHHHHHHHHh------hcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCc-cchhhHHHHHHHHHhhhhhhhh
Q 013312           89 TLSIIPLAILAY------RRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISE-RQRASAFGILLGVLSASFVCGT  161 (445)
Q Consensus        89 ~~~~~~~~~~~~------~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~g~~~g~  161 (445)
                      ...++.......      .++   ...+.....+.++ +.+...+...+...+..++ +++++.++..+...++|..+||
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~  357 (390)
T TIGR02718       282 GLAGSLALLWFAQAAFWLAPG---IAVAWSCSAFGSL-ITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIAS  357 (390)
T ss_pred             HHHHHHHHHHHHHHHcccCCc---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHH
Confidence            665333332221      122   3444555556666 6667777777887777776 7899999999999999999999


Q ss_pred             hhhhh----hchhhHHHHHHHHHHHHHH
Q 013312          162 LAARF----LSTTSAFQAATIVSMLAAA  185 (445)
Q Consensus       162 ~l~~~----~~w~~~f~~~~~~~~i~~~  185 (445)
                      .+++.    .|++..|.+.+++.++..+
T Consensus       358 ~~~G~l~~~~G~~~~f~~~~~~~l~a~~  385 (390)
T TIGR02718       358 SIAGYLTDRFGYAGGFLSGTVLAVLAIL  385 (390)
T ss_pred             HHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence            99886    3788888888776655543

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.12  E-value=5.4e-09  Score=96.04  Aligned_cols=182  Identities=11%  Similarity=0.065  Sum_probs=141.9

Q ss_pred             hhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHH
Q 013312            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP   87 (445)
Q Consensus         8 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~   87 (445)
                      |.+|.+.+........++......|.|..+..    ++.+.+....|++.+...+.-.+.-.+..++.+|+|.|+.++++
T Consensus       220 ~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f----~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Llla  295 (412)
T PF01306_consen  220 RNFWFFVLFVIGVAAIYDVFDQQFPIYFASFF----QSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLA  295 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS----SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHH
Confidence            34444444333333344555555777776643    44466667899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHH-HHHHhhhhhhhhhhhhh
Q 013312           88 LTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGIL-LGVLSASFVCGTLAARF  166 (445)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~-~~~~~~g~~~g~~l~~~  166 (445)
                      ..+.++=.++++++++   .+.+.+.+.+.|+ .-+....+...|+++.+|+|..++...+. +.+.++|..+.+.++|.
T Consensus       296 g~i~~iRi~~~~~~~~---~~~i~~~klLH~~-e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~  371 (412)
T PF01306_consen  296 GVIMAIRIIGSGFATN---PWVISLIKLLHAL-EFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGY  371 (412)
T ss_dssp             HHHHHHHHHHHHT--S---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhcc---hHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHh
Confidence            9999999999999999   9999999999999 88899999999999999988877777774 56778888887777776


Q ss_pred             ----hchhhHHHHHHHHHHHHHHHHHHhccCCCCC
Q 013312          167 ----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPN  197 (445)
Q Consensus       167 ----~~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~  197 (445)
                          +|.+..|++.+.+.+...++..+.++++++.
T Consensus       372 lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~~~  406 (412)
T PF01306_consen  372 LYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDKKQ  406 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SSST
T ss_pred             hHhhcCcHHHHHHHHHHHHHHHHHheeeecCCCcc
Confidence                4788899999988888888888888876543

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR00898 2A0119 cation transport protein

Probab=99.12  E-value=2e-09  Score=105.22  Aligned_cols=135  Identities=18%  Similarity=0.152  Sum_probs=104.6

Q ss_pred             HHHHHHHHhhhhccccccccCchhHhHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCC
Q 013312           59 IIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNIS  138 (445)
Q Consensus        59 ~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~  138 (445)
                      ...+....+.++.++++||+|||+.+..+.++.+++.++..+.++.. .+...+.-++.++ +.+...+....+..|.+|
T Consensus       363 ~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~e~~p  440 (505)
T TIGR00898       363 ISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDL-YFLRTALAVLGKF-GITSAFQMVYLYTAELYP  440 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCc-hHHHHHHHHHHHH-HHHHHHHHHHHHhccccc
Confidence            44566677888899999999999999999999999888888876521 2444455556666 556667788899999999


Q ss_pred             ccchhhHHHHHHHHHhhhhhhhhhhhhh--hchhhHHHHHHHHHHHHHHHHHHhccCCCC
Q 013312          139 ERQRASAFGILLGVLSASFVCGTLAARF--LSTTSAFQAATIVSMLAAAYMRVFLKDDVP  196 (445)
Q Consensus       139 ~~~r~~~~~~~~~~~~~g~~~g~~l~~~--~~w~~~f~~~~~~~~i~~~~~~~~~~e~~~  196 (445)
                      ++.|++++|+.+....+|.+++|.+.+.  .++..++.+.+...++..+.. +++||+..
T Consensus       441 ~~~r~~~~g~~~~~~~ig~~i~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~lpet~~  499 (505)
T TIGR00898       441 TVVRNLGVGVCSTMARVGSIISPFLVYLGEKWLFLPLVLFGGLALLAGILT-LFLPETKG  499 (505)
T ss_pred             HHHHhhhHhHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHHHHH-HcCcCCCC
Confidence            9999999999999999999999998873  245667777776666655444 56787654

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=99.11  E-value=3.8e-09  Score=91.91  Aligned_cols=354  Identities=15%  Similarity=0.089  Sum_probs=216.6

Q ss_pred             HHhhhhccccccccCchhHhHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhh
Q 013312           65 LVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRAS  144 (445)
Q Consensus        65 ~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~  144 (445)
                      .+.-.+.=.+.|..-.||+++.-.+.......+..+.++   .+.+-+..+..|. ..+.. .+.++++-+..+++++.+
T Consensus        56 Lv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~s---V~~mQvlE~FyG~-~tAaE-IAYysYIYs~Vd~~~Yqr  130 (433)
T KOG3810|consen   56 LVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPS---VKAMQVLEFFYGP-ATAAE-IAYYSYIYSKVDPEMYKR  130 (433)
T ss_pred             HHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCC---chheeeehhhcCh-HHHHH-HhhhheeeeecCHHHHHH
Confidence            444444555889999999999988888888888999999   8999999999998 65555 589999999999999999


Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhh------chhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCccccchhhhcccccC
Q 013312          145 AFGILLGVLSASFVCGTLAARFL------STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQN  218 (445)
Q Consensus       145 ~~~~~~~~~~~g~~~g~~l~~~~------~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~  218 (445)
                      +.+...++.-.|...|..++..+      +....-.+......++.++ ..++|..++..-.+.+.++..      ..+.
T Consensus       131 vt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~-A~fLP~v~rSl~f~~~~~~~~------v~~~  203 (433)
T KOG3810|consen  131 VTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLL-ALFLPRVKRSLYFHRLEDKIS------VGDL  203 (433)
T ss_pred             HHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHH-HhhCCCCchhhhhhcccccce------eccc
Confidence            99999999988888888887764      3333333433332333333 356776553211111110000      0000


Q ss_pred             CCCCCcccccc---cccchhHHHHHHhhcchhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCc-hhhHHHHHHHHHHH
Q 013312          219 ESNSPVKIPVC---KKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFN-KNQFADLMLIAGLA  294 (445)
Q Consensus       219 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~g~~~~~~~~~  294 (445)
                      ++..++.+...   .....+.+-+....++|.+..-.+=..+...+++....+.....++...-+ ....|..-++..+.
T Consensus       204 e~~~~~~~~~~~l~~~~~~l~~~l~~~y~np~ll~WSlWwAl~scg~~QV~nY~Q~LW~~~~~~~~~vyNG~veAv~tlL  283 (433)
T KOG3810|consen  204 EEMNPQASYMSYLRGAFVLLWRDLQECYSNPRLLKWSLWWALASCGYYQVTNYTQILWKEVAPNPANVYNGAVEAVSTLL  283 (433)
T ss_pred             hhcCccchhhHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHhhchhHHHHHHHHHHHHhhCCCchhhhcCHHHHHHHHH
Confidence            01011000000   000011111223445666555444445555555555555555555532111 11234555666667


Q ss_pred             HHHHHHHHHHHhhhhhcch--hHHHHHHHHHHHHHHHHHhcCCchhHHHH-HHHHhhhhhhhhhHHHHHhcccCCccchh
Q 013312          295 GTISQLLFMPLLAPILGEA--KLLSLGLFAACINMFICSISWSAWVPYAT-TAFSVLVVFATPSFRSIVSKQVGPNEQGK  371 (445)
Q Consensus       295 ~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~g~  371 (445)
                      ++++. +..|.+.-++.|.  .++.++....+...+++....+.|..+.. .++........+.....+++....|.-|-
T Consensus       284 Ga~~~-~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~t~~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~nL~~e~~gL  362 (433)
T KOG3810|consen  284 GAIAA-LAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQTQHIWVCYAGYVLFRVIYQLTITIATFQIARNLSSELFGL  362 (433)
T ss_pred             HHHHH-HHHHheeeccchhhHHHHHHHHHHhhhhhhhhhcccceehhhhhHHHHHhhHhhhhhHHHHHHHHhhhhhhhee
Confidence            77776 6667775544443  34556666666667777777888888886 66777777778888888888888899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhh---hcCCCCcccchhHHHHHHHHHHHHHHHHHhccCCCC
Q 013312          372 AQGCISGISSFANIVSPLIFSPLTALF---LSKGAPFNFPGFSIMCIGLASMVAFIQSLMMSHTPA  434 (445)
Q Consensus       372 ~~g~~~~~~~~g~~i~~~~~g~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (445)
                      .+|++....-+-+.+-..+   +.|.-   .+....+...+..|++.+.+.+++....+...++.+
T Consensus       363 vFGiNTFvAl~lQsilT~i---Vvd~~g~~L~ir~Q~~~Y~~Yf~v~~~i~~~~~~~~~~~~~~~~  425 (433)
T KOG3810|consen  363 VFGINTFVALILQSILTLI---VVDDRGLGLDIRTQFVVYSSYFIVLGVIFLIGFGIEYLMCRRNK  425 (433)
T ss_pred             eeehHHHHHHHHHHhheEE---EEcccccCCCcceeEEEEeehHHHHHHHHHHHHHHHHHHhhcCC
Confidence            9999888776655554433   23421   122233344555688888888887666555444443

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.11  E-value=8.6e-10  Score=97.35  Aligned_cols=117  Identities=14%  Similarity=0.041  Sum_probs=99.8

Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHhcCCchhHHHH-HHHHhhhhhhhhhH
Q 013312          278 HFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYAT-TAFSVLVVFATPSF  356 (445)
Q Consensus       278 g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~  356 (445)
                      +.+....|++-+.+++...+.+ ...|.++||+|||.++.+|.+..++..++.+.+.+...+... ++.|+..+ .....
T Consensus        64 ~~~~~yaGflGSsF~ilQ~~sS-~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kg-nl~v~  141 (451)
T KOG2615|consen   64 GASVFYAGFLGSSFSILQFISS-PLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKG-NLSVI  141 (451)
T ss_pred             cccchhhhhHhhHHHHHHHHhh-hhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-chHHH
Confidence            3455567888899999999998 777999999999999999999999999998888887444443 45555544 45677


Q ss_pred             HHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013312          357 RSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTA  396 (445)
Q Consensus       357 ~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~  396 (445)
                      .++++|.+++|+|+.+++.++....+|.++||.++|++..
T Consensus       142 rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  142 RAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             HHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence            8999999999999999999999999999999999999988

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.07  E-value=4.5e-09  Score=100.77  Aligned_cols=168  Identities=15%  Similarity=0.210  Sum_probs=117.2

Q ss_pred             HHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhh----hcchh-HHHHHHHHHHHHHHHHH
Q 013312          257 FSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPI----LGEAK-LLSLGLFAACINMFICS  331 (445)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~-~~~~~~~~~~~~~~~~~  331 (445)
                      ..+........+++.|+.+.+|.++.+.|.+.+...+...+.. ++.|+++||    +|||| .+..+....+++.+.+.
T Consensus        10 ~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~-p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~   88 (437)
T TIGR00792        10 GNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITD-PIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLF   88 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcc-chheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHH
Confidence            3445556667888899998899999999999999999999999 778999997    56644 56677777777777666


Q ss_pred             hcCCch------hHH-HHHHHHhhhhhhhhhHHHHHhccc-CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 013312          332 ISWSAW------VPY-ATTAFSVLVVFATPSFRSIVSKQV-GPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGA  403 (445)
Q Consensus       332 ~~~~~~------~~~-~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~  403 (445)
                      ..++.+      ... ...+++.+.+.......++..|.. ++++|++..+..+....+|..+++.+.+.+....++...
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~  168 (437)
T TIGR00792        89 TTPDFSATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDD  168 (437)
T ss_pred             hCCCCCcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence            554321      111 124456666666777778888876 468899999999999999999988888888765432111


Q ss_pred             CcccchhHHHHHHHHHHHHHHHH
Q 013312          404 PFNFPGFSIMCIGLASMVAFIQS  426 (445)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~  426 (445)
                      ..++.. .+.+.+++.++.....
T Consensus       169 ~~g~~~-~~~i~~~l~~~~~~~~  190 (437)
T TIGR00792       169 KFGWFM-FALVLALIGVVSLIIC  190 (437)
T ss_pred             cccHHH-HHHHHHHHHHHHHHHH
Confidence            222222 3444444444444443

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.07  E-value=2.6e-09  Score=96.21  Aligned_cols=176  Identities=13%  Similarity=0.172  Sum_probs=138.2

Q ss_pred             HhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHH
Q 013312            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (445)
Q Consensus         7 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~   86 (445)
                      ++.+...+++.++..=+.+-+...-..+..       .+++++..+..+..-...+..+++++++|++.||+|.|+++..
T Consensus       251 ~~~i~~FLiA~~~~~DGv~til~~~~~fg~-------~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~  323 (438)
T COG2270         251 RKNLVLFLIARFFYIDGVNTILAMGGVFGA-------ADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMI  323 (438)
T ss_pred             ccchHHHHHHHHHHHhhHHHHHHHHHHHHH-------HHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehH
Confidence            445666666666665555555555555643       5678888888999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhhhh
Q 013312           87 PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF  166 (445)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~  166 (445)
                      +.++..+.++..-+...   -..+.+.-.+.|. ..|..+....++.++.+|++|-++.+|+++...-.+..+||.+-+.
T Consensus       324 ~lvi~~~~~~~~~~~~~---~~~f~i~gll~g~-s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v  399 (438)
T COG2270         324 GLVILSIAALYLIFLEG---ELDFWILGLLVGT-SLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAV  399 (438)
T ss_pred             HHHHHHHHHHHHHHccc---cHHHHHHHHHHHH-hcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHH
Confidence            99999988888777776   5666777888898 7888889999999999999999999999999999999999998877


Q ss_pred             h-----chhhHHHHHHHHHHHHHHHHHHhccCC
Q 013312          167 L-----STTSAFQAATIVSMLAAAYMRVFLKDD  194 (445)
Q Consensus       167 ~-----~w~~~f~~~~~~~~i~~~~~~~~~~e~  194 (445)
                      +     +-|..+....++..+.+ .....+|++
T Consensus       400 ~t~iTg~~r~g~~~i~vll~iGl-~~L~~v~~~  431 (438)
T COG2270         400 ITQITGSSRAGVLSIIVLLLIGL-LLLLRVKVP  431 (438)
T ss_pred             HHHHhcchhhHHHHHHHHHHhhH-hhEEeecCC
Confidence            5     34666665555543333 333455543

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.01  E-value=4.2e-09  Score=99.67  Aligned_cols=150  Identities=11%  Similarity=0.109  Sum_probs=125.1

Q ss_pred             hhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHhcC--CchhHHHH-HHHHhhhhh
Q 013312          275 AQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISW--SAWVPYAT-TAFSVLVVF  351 (445)
Q Consensus       275 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~g~~~~~  351 (445)
                      ..+++++.+-+++++....+.+++. +.++++.||+|.|+++..+.++.++..++..++.  +.+.++++ ++.|++.+.
T Consensus        66 ~~~~ws~~~k~~i~ss~~~G~i~~~-iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~  144 (466)
T KOG2532|consen   66 GEYDWSSTEKGLIFSSFFWGYILGQ-IPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGV  144 (466)
T ss_pred             ceecCCHHHHHHHHHHHHHHHHHHH-cCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhH
Confidence            4588999999999999999999999 7779999999999999999999999988887754  34444445 888999999


Q ss_pred             hhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHh-hhcCCCCcccchhHHHHHHHHHHHHHHHHHhcc
Q 013312          352 ATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTAL-FLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMS  430 (445)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (445)
                      .+|....+..+-.|+++|++..++.....++|.+++-++.|.+.+. .       ||....++...+..+...++.+...
T Consensus       145 ~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~-------GW~sifY~~g~~g~i~~~~w~~~~~  217 (466)
T KOG2532|consen  145 LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSL-------GWPSIFYVFGIVGLIWFILWFLFYS  217 (466)
T ss_pred             HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCC-------CCchHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999987 4       6666645555445555555555554


Q ss_pred             CC
Q 013312          431 HT  432 (445)
Q Consensus       431 ~~  432 (445)
                      ++
T Consensus       218 d~  219 (466)
T KOG2532|consen  218 DS  219 (466)
T ss_pred             CC
Confidence            43

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.01  E-value=5.2e-08  Score=87.32  Aligned_cols=134  Identities=15%  Similarity=0.073  Sum_probs=113.3

Q ss_pred             hhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHhcCC--chhHH
Q 013312          263 GGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWS--AWVPY  340 (445)
Q Consensus       263 ~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  340 (445)
                      ...+..+.+.+++.++.+..+++.+......+..+.+ +..+++.||+|+|+-+..|..+.+++..++.-+.+  .+...
T Consensus        29 ~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~-lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~F  107 (422)
T COG0738          29 TCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMS-LPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFF  107 (422)
T ss_pred             hhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHh-ccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Confidence            3345555666777799999999999999999988888 77799999999999999999999999988764432  23333


Q ss_pred             H--HHHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013312          341 A--TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTAL  397 (445)
Q Consensus       341 ~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~  397 (445)
                      +  .++.+.|.+......+.++....|++....-+.+.+.++.+|+.++|.+.+.+..+
T Consensus       108 L~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils  166 (422)
T COG0738         108 LVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILS  166 (422)
T ss_pred             HHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Confidence            3  36678889999999999999999999999999999999999999999999999874

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=98.99  E-value=8.9e-09  Score=98.75  Aligned_cols=172  Identities=18%  Similarity=0.281  Sum_probs=145.0

Q ss_pred             hhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccC--chhHhH
Q 013312            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYG--RKAMLT   85 (445)
Q Consensus         8 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~G--rr~~l~   85 (445)
                      +.+..+.+...+..++.......+|.+.++        .+.+..+...+.++..+...++.+..|+++|+..  ++.+..
T Consensus       298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~--------~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~  369 (509)
T KOG2504|consen  298 PKFLLLALSNLFAYLGFNVPFVYLPSYAKS--------LGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFL  369 (509)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------cCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHH
Confidence            456667777888888888888888888754        3455577889999999999999999999999988  556677


Q ss_pred             HHHHHHHHHHHHHHhhcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhhh
Q 013312           86 LPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAAR  165 (445)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~  165 (445)
                      ++++..+++...+.+.++   ++.+...-.+.|+ +.|.........+.|..+.++-+.++|+.....+++.++||.+++
T Consensus       370 ~~ll~~gl~~~~~p~~~~---~~~l~~~~~~fG~-~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag  445 (509)
T KOG2504|consen  370 LTLLIAGLARLFLPFATT---YVGLIVFSILFGF-CVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAG  445 (509)
T ss_pred             HHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccce
Confidence            888889999999999999   9999999999999 888887777779999999999999999999999999999999998


Q ss_pred             hh-----chhhHHHHHHHHHHHHHHHHHHhcc
Q 013312          166 FL-----STTSAFQAATIVSMLAAAYMRVFLK  192 (445)
Q Consensus       166 ~~-----~w~~~f~~~~~~~~i~~~~~~~~~~  192 (445)
                      .+     +|...|+.+++..++..... +..|
T Consensus       446 ~~~d~tg~Y~~~f~~~g~~~~~s~~~~-~~~~  476 (509)
T KOG2504|consen  446 LLYDITGNYDHAFYFCGLCFLLSAVLL-LILR  476 (509)
T ss_pred             eeeeccCCeeeehhhcChHHHHHHHHH-HHhH
Confidence            75     48888998887766655443 4444

>PRK09848 glucuronide transporter; Provisional

Probab=98.98  E-value=3.4e-09  Score=101.88  Aligned_cols=151  Identities=11%  Similarity=0.086  Sum_probs=112.0

Q ss_pred             HhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHH
Q 013312            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (445)
Q Consensus         7 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~   86 (445)
                      +|.+....+..++............|.+.++.       .+.+....++......++..++.+++++++||+|+|+++..
T Consensus       227 n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~  299 (448)
T PRK09848        227 NRPLFMLCIGALCVLISTFAVSASSLFYVRYV-------LNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLI  299 (448)
T ss_pred             CchHHHHHHHHHHHHHHHHHHhhhheeeEeee-------cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence            34455556666666666666656666665432       23344444454555567788899999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccc-------hhhHHHHHHHHHhhhhhh
Q 013312           87 PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQ-------RASAFGILLGVLSASFVC  159 (445)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~-------r~~~~~~~~~~~~~g~~~  159 (445)
                      +.++.+++.+...+.++.+ ++.+++..++.|+ +.+...+...++.+|..|++|       +|..++..+....+|..+
T Consensus       300 g~~~~~i~~~~~~~~~~~~-~~~~~~~~~l~g~-G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~ai  377 (448)
T PRK09848        300 GALLGTCGYLLFFWVSVWS-LPVALVALAIASI-GQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAI  377 (448)
T ss_pred             HHHHHHHHHHHHHHcCchh-HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHH
Confidence            9998888887777754221 6667777888999 888888999999999987643       588899999999999999


Q ss_pred             hhhhhhh
Q 013312          160 GTLAARF  166 (445)
Q Consensus       160 g~~l~~~  166 (445)
                      |+.+.+.
T Consensus       378 g~~i~g~  384 (448)
T PRK09848        378 GGSIPAF  384 (448)
T ss_pred             HHHHHHH
Confidence            8877665

>TIGR01272 gluP glucose/galactose transporter

Probab=98.95  E-value=4.2e-08  Score=88.94  Aligned_cols=157  Identities=11%  Similarity=0.018  Sum_probs=115.0

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHHH
Q 013312            9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL   88 (445)
Q Consensus         9 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~   88 (445)
                      .++...+..|+.......+...++.|++|.     ...+.+..+.++..+.+..+..++.+..+++.||+|+|+.+..+.
T Consensus       141 ~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~-----~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~  215 (310)
T TIGR01272       141 HLVLGALGIFVYVGAEVSAGSFLVNFLSDP-----HALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNA  215 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence            344444555554445666667778888642     335677788999999999999999999999999999999998888


Q ss_pred             HHHHHHHHHHHhhcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhhhhh-
Q 013312           89 TLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL-  167 (445)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~-  167 (445)
                      .+..++.++....++   ... ...-++.|+ +.+..+|...+...+..|++ .+++.++. ....+|..++|.+.|.+ 
T Consensus       216 ~l~~~~~~l~~~~~~---~~~-~~~~~l~g~-~~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~la  288 (310)
T TIGR01272       216 FLAVLLSIGAALTHG---YVA-MWFVLALGL-FNSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLA  288 (310)
T ss_pred             HHHHHHHHHHHHcCC---HHH-HHHHHHHHH-HHHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHH
Confidence            888887766666554   322 235557888 88889999999998888753 45566665 45668889999876664 


Q ss_pred             ---chhhHHHHHH
Q 013312          168 ---STTSAFQAAT  177 (445)
Q Consensus       168 ---~w~~~f~~~~  177 (445)
                         +.+..|++..
T Consensus       289 d~~g~~~a~~v~~  301 (310)
T TIGR01272       289 DCLGIQLAFALPV  301 (310)
T ss_pred             HhccchHHHHHHH
Confidence               5567776444

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.95  E-value=3.5e-08  Score=95.38  Aligned_cols=146  Identities=15%  Similarity=0.189  Sum_probs=109.2

Q ss_pred             HHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhh----hhcc-hhHHHHHHHHHHHH
Q 013312          252 AVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAP----ILGE-AKLLSLGLFAACIN  326 (445)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~----~~~~-~~~~~~~~~~~~~~  326 (445)
                      .+..+..++.......+++.|+.+..|.++..+|.++.+.-+...+.. ++.|+++|    |+|| |+.+..+....+++
T Consensus        12 g~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~d-p~~G~lsD~t~sr~Grrrp~il~g~i~~~i~   90 (473)
T PRK10429         12 GFGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAIND-PIMGWIVNNTRSRWGKFKPWILIGTLANSVV   90 (473)
T ss_pred             ccchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh-chheeehhcCCCCCCCcchhHhhhhHHHHHH
Confidence            344455566677778889999999999999999999999999999998 77799999    4587 55666777777777


Q ss_pred             HHHHHhcCCc-------hhHHHHHHHHhhhhhhhhhHHHHHhccc-CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013312          327 MFICSISWSA-------WVPYATTAFSVLVVFATPSFRSIVSKQV-GPNEQGKAQGCISGISSFANIVSPLIFSPLTALF  398 (445)
Q Consensus       327 ~~~~~~~~~~-------~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~  398 (445)
                      +.++...++.       |......++..+.........++..|.. ++++|.+..+......++|+.+.+.+...+.+..
T Consensus        91 ~~llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~  170 (473)
T PRK10429         91 LFLLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYV  170 (473)
T ss_pred             HHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            6555443311       1111124456777778888889999988 5789999999888888888778777666665544

>PRK09669 putative symporter YagG; Provisional

Probab=98.94  E-value=2.1e-08  Score=96.26  Aligned_cols=144  Identities=12%  Similarity=0.125  Sum_probs=105.7

Q ss_pred             HHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhh----hcc-hhHHHHHHHHHHHHHH
Q 013312          254 VAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPI----LGE-AKLLSLGLFAACINMF  328 (445)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~----~~~-~~~~~~~~~~~~~~~~  328 (445)
                      ..+..+........+++.|+.+.+|+|+..+|.++.+..+...+.. ++.|+++||    +|| |+.+..+.+..+++..
T Consensus        17 g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~d-p~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~   95 (444)
T PRK09669         17 GDTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTD-PLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCL   95 (444)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHccc-ceeeEeeecCCCCCCCcchhHHHHHHHHHHHHH
Confidence            3344455556667889999999999999999999999999999999 778999998    555 4556666666666665


Q ss_pred             HHHhcCCc------hhHHH-HHHHHhhhhhhhhhHHHHHhccc-CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013312          329 ICSISWSA------WVPYA-TTAFSVLVVFATPSFRSIVSKQV-GPNEQGKAQGCISGISSFANIVSPLIFSPLTALF  398 (445)
Q Consensus       329 ~~~~~~~~------~~~~~-~~~~g~~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~  398 (445)
                      +....++.      +.... ..+++.+.........++..|.. ++++|++..+.......+|..+++.+...+....
T Consensus        96 l~f~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~  173 (444)
T PRK09669         96 LTFYTPDFGATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDIL  173 (444)
T ss_pred             HHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            54444321      11111 24455566666777778888877 4578999999999999999999988877777655

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.92  E-value=4.5e-08  Score=83.10  Aligned_cols=148  Identities=17%  Similarity=0.196  Sum_probs=115.1

Q ss_pred             HhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHH
Q 013312            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (445)
Q Consensus         7 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~   86 (445)
                      +..+|.+...++..+....-...+-|.+.+       +.+++|+...+-+.+......++.+|+.|.++||+|++..++.
T Consensus       263 ~ppfw~~~iicv~yyva~fPFi~lg~~fF~-------~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~  335 (459)
T KOG4686|consen  263 YPPFWVLVIICVLYYVAWFPFITLGPMFFQ-------KRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVA  335 (459)
T ss_pred             CccHHHHHHHHHHHHHHHHHHhhhhHHHHH-------HhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHH
Confidence            456788888888888877666666666665       4567777778888888888889999999999999999988887


Q ss_pred             HHHHHHH-HHHHHHhhcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhhh
Q 013312           87 PLTLSII-PLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAAR  165 (445)
Q Consensus        87 ~~~~~~~-~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~  165 (445)
                      +..+..+ +.....++.     +.=+++..+.|+ +....-.+....++...|+++.|++.|..+...++|..+.|++++
T Consensus       336 ~a~~~tl~~H~~l~Ft~-----lsPy~~m~~lGL-sysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag  409 (459)
T KOG4686|consen  336 SACILTLLGHSGLFFTF-----LSPYTSMTFLGL-SYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAG  409 (459)
T ss_pred             HHHHHHHHHhhhHHhhh-----ccHHHHHHHHhh-hHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhh
Confidence            6655444 444433332     222466778888 666665557778899999999999999999999999999999998


Q ss_pred             hh
Q 013312          166 FL  167 (445)
Q Consensus       166 ~~  167 (445)
                      .+
T Consensus       410 ~i  411 (459)
T KOG4686|consen  410 FI  411 (459)
T ss_pred             ee
Confidence            75

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.89  E-value=8.7e-08  Score=92.42  Aligned_cols=123  Identities=16%  Similarity=0.135  Sum_probs=90.5

Q ss_pred             HHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHhcCCchhHHHH-HHH
Q 013312          267 ASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYAT-TAF  345 (445)
Q Consensus       267 ~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  345 (445)
                      ..++...+| .|-++. ..++.....+...+.. .+.|+++|.+|||+.++.+.++..++.++.+.+++...++.. .+.
T Consensus        65 ~~l~~I~~d-iG~~~~-~~w~~~~~~l~~av~~-~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~  141 (599)
T PF06609_consen   65 SILPYINAD-IGGSDN-WSWFSTAWTLASAVSF-PFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLY  141 (599)
T ss_pred             HHHHHHHHh-cCCCcc-chHHHHHHHHHHHHHH-HhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHH
Confidence            334444444 676654 4777888888888877 777999999999999999999999999999999988777775 777


Q ss_pred             HhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHH
Q 013312          346 SVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSP  393 (445)
Q Consensus       346 g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~  393 (445)
                      |++.+... .....++|..|.+.|+...++.....-.....+|.+...
T Consensus       142 GvgaG~~~-~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~  188 (599)
T PF06609_consen  142 GVGAGVQE-LAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQL  188 (599)
T ss_pred             HHhhHHHH-HHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHH
Confidence            88766554 445568999999999877766554443333344444433

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=98.88  E-value=9.8e-07  Score=78.23  Aligned_cols=350  Identities=12%  Similarity=-0.001  Sum_probs=198.3

Q ss_pred             HhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhcccccc-----ccCch
Q 013312            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSD-----QYGRK   81 (445)
Q Consensus         7 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~D-----r~Grr   81 (445)
                      ++.+..+.....+..+..++.. .+|.+++..        +.|-+..+...-+ ... ...-+.|.++.|     |+|||
T Consensus        30 ~~~illLl~LYllQGiP~GL~~-~iP~lL~ak--------~vSyt~~a~fS~a-y~P-~sLKllWaPiVDs~y~k~~Grr   98 (510)
T KOG3574|consen   30 RSSILLLLFLYLLQGIPLGLIG-AIPLLLQAK--------GVSYTSQAIFSFA-YWP-FSLKLLWAPIVDSVYSKRFGRR   98 (510)
T ss_pred             hhhHHHHHHHHHHcCCchhHhh-hhHHHhcCC--------Ccchhhhhhhhhh-hhH-HHHHHHHHhhhHHHHHHhhccc
Confidence            4456666677777888888888 889988631        2222333331111 111 223467889999     99999


Q ss_pred             hHhHH-HHHHHHHHHHHHHhhcCc------ch--hHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHH
Q 013312           82 AMLTL-PLTLSIIPLAILAYRRSI------SF--FYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGV  152 (445)
Q Consensus        82 ~~l~~-~~~~~~~~~~~~~~~~~~------~~--~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~  152 (445)
                      |..++ +..+.+..+...+.-.+.      ..  ...+....++.-+ .++....+...+.-....+++.+.+..-...+
T Consensus        99 ksWvvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnf-laAtQDIAVDgwALtmLs~e~lgyaST~q~Vg  177 (510)
T KOG3574|consen   99 KSWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNF-LAATQDIAVDGWALTMLSRENLGYASTCQSVG  177 (510)
T ss_pred             cceeeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHH-HHhhhhhhhhHHHHHhcCHhhcCchhHHHHHH
Confidence            98664 334433333333332111      00  2233334455666 66788888999999999999988888877777


Q ss_pred             Hhhhhhhhhhhhhhh-----------ch---------hhHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCccccchhhh
Q 013312          153 LSASFVCGTLAARFL-----------ST---------TSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEET  212 (445)
Q Consensus       153 ~~~g~~~g~~l~~~~-----------~w---------~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~  212 (445)
                      .+.|..+|..+--.+           +|         ..-.++.+.+..+.-.+..+.-+|+++...++           
T Consensus       178 ~~~GyfL~~~ifLaL~s~dF~N~y~rs~P~~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke~~~~~~~e-----------  246 (510)
T KOG3574|consen  178 QTAGYFLGNVVFLALESPDFCNTYLRSIPLDQGFITLAGYLWFWGALFIVATTLVALLKKENDESVDEE-----------  246 (510)
T ss_pred             HhhhHHhhcceeeEecChhhhhHHHhcCcCccceEEhhHHHHHHHHHHHHHHHHHHHhcCCCchhhhhh-----------
Confidence            777777664332111           22         11233444444444444434333332221110           


Q ss_pred             cccccCCCCCCcccccccccchhHHHHHHhhcchhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHH
Q 013312          213 EGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAG  292 (445)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~  292 (445)
                                    .........+- ++...+-|.+..+.......-.++.+.....+.-+.| .|.+..+.+.+....-
T Consensus       247 --------------~~~~i~~~yk~-l~~vLklk~v~~la~i~lt~K~gf~a~da~t~LkLle-~Gv~ke~Lal~~v~~~  310 (510)
T KOG3574|consen  247 --------------LELGIHESYKL-LRDVLKLKSVRWLAGILLTGKLGFQAADALTSLKLLE-HGVPKEELALIAVPLV  310 (510)
T ss_pred             --------------hhcCHHHHHHH-HHHHHcCccHHHHHHHHHHHHHHhhhhhhccchHHHH-cCCChhHheeeeeehh
Confidence                          11111112222 2233445566666777777778888888888888888 6999998776654444


Q ss_pred             HHHHHHHHHHHHHhhh-h-----hcchhHHHHHHHHHHHHHHHHHhcCC-------ch-hHHH--H---HHHHhhhhhhh
Q 013312          293 LAGTISQLLFMPLLAP-I-----LGEAKLLSLGLFAACINMFICSISWS-------AW-VPYA--T---TAFSVLVVFAT  353 (445)
Q Consensus       293 ~~~~~~~~~~~~~l~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~-~~~~--~---~~~g~~~~~~~  353 (445)
                      -..++.. ...|++.. +     +-|+....+.......  .+....++       .. ..++  +   .+.+......+
T Consensus       311 plqI~l~-~~~gk~ta~~~pl~~~lka~~~R~~~~~~~t--~Lv~~~~~~~~~~G~~~~~~~il~i~~y~~~~~~~ts~f  387 (510)
T KOG3574|consen  311 PLQIALP-LYIGKWTAGPRPLNVFLKAVPYRLGGGLVQT--ALVWWTPTLGHSDGTFPRGYYILLITSYAFHQVFVTSMF  387 (510)
T ss_pred             hHHHhhh-hhheeecCCCCcchHHHHhhhHHHHHHHHHH--HHHhhhcccccCCCceeechHHHHHHHHHHhhhHHHHHH
Confidence            4444444 22233322 1     1111122222222222  22222111       10 1111  1   23344444456


Q ss_pred             hhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013312          354 PSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALF  398 (445)
Q Consensus       354 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~  398 (445)
                      ....+..++..||...|+.+.+.|+..++|+-.-..+..++.|.+
T Consensus       388 v~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~l  432 (510)
T KOG3574|consen  388 VSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLADGL  432 (510)
T ss_pred             HHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcccC
Confidence            666777899999999999999999999999999989999998865

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.85  E-value=4.8e-08  Score=93.27  Aligned_cols=148  Identities=18%  Similarity=0.184  Sum_probs=123.9

Q ss_pred             HhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHH
Q 013312            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (445)
Q Consensus         7 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~   86 (445)
                      +|.+..++...++..++..+.....+.+.++.++.+        ...+.+..+..++..++.+++++++||+|+|+.+..
T Consensus       224 nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~--------~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~  295 (428)
T PF13347_consen  224 NRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE--------GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYII  295 (428)
T ss_pred             cchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc--------hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhh
Confidence            466777888888888998888888888888754221        245677778899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhc--CcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCcc-------chhhHHHHHHHHHhhhh
Q 013312           87 PLTLSIIPLAILAYRR--SISFFYAYYALRTLTAMVCEGSINCLALAYVADNISER-------QRASAFGILLGVLSASF  157 (445)
Q Consensus        87 ~~~~~~~~~~~~~~~~--~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~g~  157 (445)
                      +..+.+++.++..+.+  |   .+.+++.-++.|+ +.+..++...++++|..+.+       +.|..++..+....+|.
T Consensus       296 ~~~~~~~~~~~~~~~~~~~---~~~~~i~~~l~gi-~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~  371 (428)
T PF13347_consen  296 GLLLAALGFLLLFFLGPGS---PWLVLILFILAGI-GYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQ  371 (428)
T ss_pred             hHHHHHHHHHHHHHHHhhh---HHHHHHHHHHhHh-hhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHH
Confidence            9999999999988886  6   8999999999999 88888899999999999843       34777888888888888


Q ss_pred             hhhhhhhhh
Q 013312          158 VCGTLAARF  166 (445)
Q Consensus       158 ~~g~~l~~~  166 (445)
                      .+++.+.+.
T Consensus       372 ~la~~i~g~  380 (428)
T PF13347_consen  372 GLAGAIVGL  380 (428)
T ss_pred             HHHHHHHHH
Confidence            888776654

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.83  E-value=5.5e-08  Score=81.81  Aligned_cols=299  Identities=11%  Similarity=0.037  Sum_probs=157.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHhhhccchhHH
Q 013312           47 SLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSIN  126 (445)
Q Consensus        47 ~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~  126 (445)
                      +....++|.+.-+..-..++...+.|.++||-|||+.-+.-.    +..+++........+-.++++|.+.|+ +.+..+
T Consensus        68 gFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtyc----itYiLsCiTKhSpqYkVLmVGR~LGGi-aTsLLF  142 (454)
T KOG4332|consen   68 GFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYC----ITYILSCITKHSPQYKVLMVGRVLGGI-ATSLLF  142 (454)
T ss_pred             CccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeeh----HHHHHHHHhhcCCceEEEeehhhhhhH-HHHHHH
Confidence            333455677776777777888889999999999999755444    444444444333338899999999999 777777


Q ss_pred             HHHHHHH-hcCCCccchhhHHHHHHHHHh----hhh----hhhhh----hhhh--hchhhHHHHHHHHHHHHHHHHHHhc
Q 013312          127 CLALAYV-ADNISERQRASAFGILLGVLS----ASF----VCGTL----AARF--LSTTSAFQAATIVSMLAAAYMRVFL  191 (445)
Q Consensus       127 ~~~~~~i-~~~~~~~~r~~~~~~~~~~~~----~g~----~~g~~----l~~~--~~w~~~f~~~~~~~~i~~~~~~~~~  191 (445)
                      .+..++. .|..  ++|+.-.-+....++    +|.    +++.+    +...  +|--.+|-..+.+..+...+....-
T Consensus       143 SaFEsWliaEHn--ekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLaigmAvil~~W  220 (454)
T KOG4332|consen  143 SAFESWLIAEHN--EKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAIGMAVILSSW  220 (454)
T ss_pred             HHHHHHHHHHhh--hccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHhhh
Confidence            6666654 4544  233332222222221    222    22222    2222  2445677665555444444333333


Q ss_pred             cCCCCCCCCcCCccccchhhhcccccCCCCCCcccccccccchhHHHHHHhhcchhhHHHHHHHHHHHhhhhhh-HHHHH
Q 013312          192 KDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGM-QASFL  270 (445)
Q Consensus       192 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  270 (445)
                      .|+..++.+.+                           .-....+...+.+..++++..+-....+.-...+.+ ..|-|
T Consensus       221 ~ENygdps~~k---------------------------dlltqf~gaa~aiaSD~ki~LLG~iqsLFE~smytFVFLWTP  273 (454)
T KOG4332|consen  221 SENYGDPSENK---------------------------DLLTQFKGAARAIASDEKIALLGAIQSLFEGSMYTFVFLWTP  273 (454)
T ss_pred             hhccCChhhhH---------------------------HHHHHhhHhHHHHhcchHHHHHHHHHHHHhhhhheeeeeecc
Confidence            33322211110                           000122222333444454433333332222222222 22223


Q ss_pred             HHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcc--hhHHHHHHHHHHHHHHHHHhc----CC---ch-hHH
Q 013312          271 YFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGE--AKLLSLGLFAACINMFICSIS----WS---AW-VPY  340 (445)
Q Consensus       271 ~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~----~~---~~-~~~  340 (445)
                      ..-.+.-+.   --|.+++......++++.+. .++..|-..  ...+.+.+.+....+.+....    ++   +. .++
T Consensus       274 aLspn~e~i---PhGfiFatFMlASmLGSSla-~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i  349 (454)
T KOG4332|consen  274 ALSPNDEEI---PHGFIFATFMLASMLGSSLA-SRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLI  349 (454)
T ss_pred             cCCCCcccC---CchhHHHHHHHHHHHhhHHH-HHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHH
Confidence            222111121   23788888888888888444 455544333  234444444444443332221    11   11 223


Q ss_pred             HHHHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHH
Q 013312          341 ATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFA  383 (445)
Q Consensus       341 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g  383 (445)
                      ...++-...|..+|...-+-++..|++.|++.+-.+..--++-
T Consensus       350 ~F~~~E~cvGlfwPSimkmRsqyIPEearstimNfFRvPLnif  392 (454)
T KOG4332|consen  350 GFCLFEACVGLFWPSIMKMRSQYIPEEARSTIMNFFRVPLNIF  392 (454)
T ss_pred             HHHHHHHHHhhcchHHHHHHHhhCCHHHHhhhhhheechhhHh
Confidence            3355667888899999999999999999988877665544443

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.83  E-value=1.2e-07  Score=89.11  Aligned_cols=152  Identities=16%  Similarity=0.132  Sum_probs=109.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHHHHHHHHHHHHHHhhcCcch-----h-HHHHHHHHHhhhc
Q 013312           47 SLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISF-----F-YAYYALRTLTAMV  120 (445)
Q Consensus        47 ~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~-----~-~~l~~~r~l~G~~  120 (445)
                      +++....-++.........+..++...+.||+|||+.++.+..+..+..+++........     . +..+++.++..++
T Consensus       301 G~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~  380 (485)
T KOG0569|consen  301 GFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIIS  380 (485)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence            555556667777778888899999999999999999999999998888777765432111     1 1223344443331


Q ss_pred             cchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhh----hhhhhhhchhhHHHHHHHHHHHHHHHHHHhccCCCC
Q 013312          121 CEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCG----TLAARFLSTTSAFQAATIVSMLAAAYMRVFLKDDVP  196 (445)
Q Consensus       121 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g----~~l~~~~~w~~~f~~~~~~~~i~~~~~~~~~~e~~~  196 (445)
                      -+-+..|...-+.+|.+|++.|+.++++.....-+...+-    |.+...+|- ..|.+..+.+++..++.++.+||++.
T Consensus       381 f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkg  459 (485)
T KOG0569|consen  381 FAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKG  459 (485)
T ss_pred             hhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCC
Confidence            2222347888999999999999999999887776655432    455555666 77777788888888999999999875


Q ss_pred             CCC
Q 013312          197 NDD  199 (445)
Q Consensus       197 ~~~  199 (445)
                      +..
T Consensus       460 r~~  462 (485)
T KOG0569|consen  460 RTP  462 (485)
T ss_pred             CCH
Confidence            443

>PRK11462 putative transporter; Provisional

Probab=98.81  E-value=2.4e-07  Score=89.05  Aligned_cols=146  Identities=16%  Similarity=0.178  Sum_probs=110.6

Q ss_pred             HHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhh----hcch-hHHHHHHHHHHHHH
Q 013312          253 VVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPI----LGEA-KLLSLGLFAACINM  327 (445)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~----~~~~-~~~~~~~~~~~~~~  327 (445)
                      +..+..+........++..|+.+..|.++..+|.++.+.-+.-.+.- ++.|+++||    +||| +.+..+.+..+++.
T Consensus        16 ~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~D-p~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~   94 (460)
T PRK11462         16 MGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISD-PCMGLLADRTRSRWGKFRPWVLFGALPFGIVC   94 (460)
T ss_pred             cchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHh-hhheehhccCCCCCCCcchhHhHHHHHHHHHH
Confidence            34444555666677889999999999999999999999999999998 777999996    4664 45566767777776


Q ss_pred             HHHHhcCC--ch--hHHH---HHHHHhhhhhhhhhHHHHHhcccC-CccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013312          328 FICSISWS--AW--VPYA---TTAFSVLVVFATPSFRSIVSKQVG-PNEQGKAQGCISGISSFANIVSPLIFSPLTALFL  399 (445)
Q Consensus       328 ~~~~~~~~--~~--~~~~---~~~~g~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~  399 (445)
                      .++...++  ..  ..+.   ..++..+.........++..|..+ +++|++..+.......+|..+++.+...+.+..+
T Consensus        95 ~llf~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g  174 (460)
T PRK11462         95 VLAYSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIG  174 (460)
T ss_pred             HHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            65554432  11  1122   245677777778888888888876 6889999999999999999999888877776654

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.81  E-value=1.1e-06  Score=86.82  Aligned_cols=139  Identities=17%  Similarity=0.119  Sum_probs=103.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhccccccc-cCchhHhHHHHHHHHHHHHHHHhhcCc-----chhHHHHHHHHHhhhccch
Q 013312           50 IYLSGFQQAIIGLGTLVMMPVIGNLSDQ-YGRKAMLTLPLTLSIIPLAILAYRRSI-----SFFYAYYALRTLTAMVCEG  123 (445)
Q Consensus        50 ~~~~g~~~s~~~l~~~~~~~~~G~l~Dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~l~G~~~~g  123 (445)
                      ......+...+....-+...++|.++|+ +||++.+.++.++..++..+.++....     ......+++-.+..+ |.|
T Consensus        22 ~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~-G~G  100 (654)
T TIGR00926        22 ESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIAL-GTG  100 (654)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHh-hcc
Confidence            3444555666666667778889999996 599999999999999999888775321     112335566666666 778


Q ss_pred             hHHHHHHHHHhcCCCcc---chhhHHHHHHHHHhhhhhhhhhhhhhh-----------chhhHHHHHHHHHHHHHHHHHH
Q 013312          124 SINCLALAYVADNISER---QRASAFGILLGVLSASFVCGTLAARFL-----------STTSAFQAATIVSMLAAAYMRV  189 (445)
Q Consensus       124 ~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~~~g~~~g~~l~~~~-----------~w~~~f~~~~~~~~i~~~~~~~  189 (445)
                      ..-|...+...|.++++   +|.+.+.++..+.++|..+++.+...+           +|...|.+.++..++..+....
T Consensus       101 giKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~  180 (654)
T TIGR00926       101 GIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMA  180 (654)
T ss_pred             ccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHH
Confidence            88899999999999864   366778888888899998887665543           4888998888887766655443

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.80  E-value=3.1e-07  Score=83.41  Aligned_cols=162  Identities=23%  Similarity=0.309  Sum_probs=123.5

Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHHHHHHH
Q 013312           13 LFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSI   92 (445)
Q Consensus        13 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~   92 (445)
                      .....+....+.....+..+.+..+...   +. . . ...++..+.+.++..++.++.|.++||+|||+.+..+.....
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~-~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~   80 (338)
T COG0477           7 LALAALLLGLDLGLLSPALPLLLSTLSL---SS-G-R-LLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFL   80 (338)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHcCC---Cc-h-h-HHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHH
Confidence            3444455556677777777777765311   11 0 0 467889999999999999999999999999988888887666


Q ss_pred             HHHHHHHhhcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCc-cchhhHHHHHHH-HHhhhhhhhhhhhhhh---
Q 013312           93 IPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISE-RQRASAFGILLG-VLSASFVCGTLAARFL---  167 (445)
Q Consensus        93 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~-~~r~~~~~~~~~-~~~~g~~~g~~l~~~~---  167 (445)
                      ++.+...+..+ ...+.+++.|+.+|+ +.+...+...+++.|+.|+ ++|+...+.... ...+|..++|.+++.+   
T Consensus        81 ~~~~~~~~~~~-~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (338)
T COG0477          81 LGTLLLALAPN-VGLALLLILRLLQGL-GGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA  158 (338)
T ss_pred             HHHHHHHhCcc-chHHHHHHHHHHHHh-hhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666655 337899999999999 8888889999999999998 688999998888 5788888888776653   


Q ss_pred             ---chhhHHHHHHHHHHH
Q 013312          168 ---STTSAFQAATIVSML  182 (445)
Q Consensus       168 ---~w~~~f~~~~~~~~i  182 (445)
                         +||..|.........
T Consensus       159 ~~~~~~~~~~~~~~~~~~  176 (338)
T COG0477         159 LLWGWRAAFLLAALLGLL  176 (338)
T ss_pred             HhcchHHHHHHHHHHHHH
Confidence               688877666655433

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.79  E-value=5.4e-07  Score=88.05  Aligned_cols=112  Identities=15%  Similarity=0.050  Sum_probs=99.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHhcCCchhHHHH-HHHHhhhhhhhhhHHHHHh
Q 013312          283 QFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYAT-TAFSVLVVFATPSFRSIVS  361 (445)
Q Consensus       283 ~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~  361 (445)
                      +.+++.+...++..++. +..|+++|++|||+.+..+.+...++.++.+++.+.+.+... ++.|+|.+........+.+
T Consensus        90 ~~s~~~s~~~lga~~g~-l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~s  168 (513)
T KOG0254|consen   90 RQGLLTSILNLGALVGS-LLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYIS  168 (513)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHh
Confidence            44899999999999999 888999999999999999999999999999999988888887 8889999999999999999


Q ss_pred             cccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013312          362 KQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTA  396 (445)
Q Consensus       362 ~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~  396 (445)
                      |..|++.||...+..+....+|..++ .+.+...+
T Consensus       169 Eiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~  202 (513)
T KOG0254|consen  169 EIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTS  202 (513)
T ss_pred             hcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhc
Confidence            99999999999999999999888777 44444443

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.73  E-value=1e-07  Score=88.22  Aligned_cols=163  Identities=17%  Similarity=0.218  Sum_probs=132.1

Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHHHHHHH
Q 013312           13 LFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSI   92 (445)
Q Consensus        13 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~   92 (445)
                      +++..++...+.+.+...+-..++|.        +......|........+-.+.-++.+++.+|+|+-+++..++.+..
T Consensus       376 ff~~av~mG~g~~lv~tFLfWHled~--------~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~  447 (618)
T KOG3762|consen  376 FFFVAVVMGAGVGLVFTFLFWHLEDL--------GGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNV  447 (618)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhc--------CCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHH
Confidence            34455556666677777776666553        3334566777777788888888999999999999999999999999


Q ss_pred             HHHHHHHhhcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHH-hhhhhhhhhhhhh----h
Q 013312           93 IPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVL-SASFVCGTLAARF----L  167 (445)
Q Consensus        93 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~-~~g~~~g~~l~~~----~  167 (445)
                      +=.+..++.+|   .|..+...+++|+ ..+..+.+..+|+++..||+-|..+.++.+... ++|--+|.++|+.    +
T Consensus       448 ~Rf~~~S~L~n---~W~vLPieilqgi-t~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~f  523 (618)
T KOG3762|consen  448 GRFLYYSYLQN---PWMVLPIEILQGI-THALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERF  523 (618)
T ss_pred             HHHHHHHHhcC---chheeeHHHHHHH-HHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheee
Confidence            99999999999   9999999999999 999999999999999999999999999988654 6677777777766    5


Q ss_pred             chhhHHHHHHHHHHHHHHHH
Q 013312          168 STTSAFQAATIVSMLAAAYM  187 (445)
Q Consensus       168 ~w~~~f~~~~~~~~i~~~~~  187 (445)
                      +-|..|.+.++.+++.+++.
T Consensus       524 g~~ttf~~~giAcl~~l~~~  543 (618)
T KOG3762|consen  524 GARTTFRIFGIACLVTLALF  543 (618)
T ss_pred             hhHHHHHHHHHHHHHHHHHH
Confidence            77888888777666554443

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.73  E-value=1.2e-06  Score=75.46  Aligned_cols=155  Identities=12%  Similarity=0.197  Sum_probs=102.5

Q ss_pred             HHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHhcC-------CchhHH
Q 013312          268 SFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISW-------SAWVPY  340 (445)
Q Consensus       268 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~  340 (445)
                      .....+++.+|+|.++...+-....++..+ + +..|.+.|++|++..+.+|.....++...+...-       +.|.+.
T Consensus        23 ~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~  100 (250)
T PF06813_consen   23 AYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-G-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMC  100 (250)
T ss_pred             hhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-c-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHH
Confidence            344556677999999999988888888876 4 6679999999999999999999999988776532       233333


Q ss_pred             HH-HHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccchhHHHHHHHHH
Q 013312          341 AT-TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLAS  419 (445)
Q Consensus       341 ~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~  419 (445)
                      +. .+.+.+.............+.+| ++||++.|+.-....+++.+-..+...+++.    +    ......+......
T Consensus       101 ~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~----~----~~~fll~la~~~~  171 (250)
T PF06813_consen  101 LFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGD----D----PSSFLLFLAVLPA  171 (250)
T ss_pred             HHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCC----C----hHHHHHHHHHHHH
Confidence            22 23334444444555555567888 6899999999999987777666555444432    1    1222233333344


Q ss_pred             HHHHHHHHhccCCC
Q 013312          420 MVAFIQSLMMSHTP  433 (445)
Q Consensus       420 ~~~~~~~~~~~~~~  433 (445)
                      +++++....+++.+
T Consensus       172 ~v~l~~~~~vr~~~  185 (250)
T PF06813_consen  172 VVCLVAMFFVRPVP  185 (250)
T ss_pred             HHHHHHhhheeccC
Confidence            44555555555543

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=98.73  E-value=1.1e-05  Score=72.19  Aligned_cols=150  Identities=15%  Similarity=0.005  Sum_probs=102.6

Q ss_pred             hcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHhcCCchhHHHH-HHHHhhhhhhhh
Q 013312          276 QFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYAT-TAFSVLVVFATP  354 (445)
Q Consensus       276 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~  354 (445)
                      .+|++..+++.++......+.+.+ .+.|.++||+|||+.-+...++..++.+..- .++.+.+++. ++.|++....+.
T Consensus        63 ~yg~~~~qIa~Lf~~Gf~Ss~i~g-~~~G~laD~~Grk~~cl~~cily~~scl~k~-~~~~~~L~~GRvlgGiaTSLLfS  140 (354)
T PF05631_consen   63 SYGFSEHQIAILFVAGFASSAIFG-TFVGSLADRYGRKKACLLFCILYSLSCLTKH-SSNYPVLLLGRVLGGIATSLLFS  140 (354)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCchHHHHHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHHHHHHHH
Confidence            489999999999998888888888 6779999999999998888888888876533 4556666665 777888888888


Q ss_pred             hHHHHH-h----cccCCccchhHHHHHHH-HHHHHHHHHHHHHHHHHHhhhcCCCCcccchhHHHHHHHHHHHHHHHHHh
Q 013312          355 SFRSIV-S----KQVGPNEQGKAQGCISG-ISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLM  428 (445)
Q Consensus       355 ~~~~~~-~----~~~~~~~~g~~~g~~~~-~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (445)
                      ..-++. .    +-+|++..+..++.... .+.+-.+++..++-++.+..+ .     .+..+|.....+.+++.+....
T Consensus       141 ~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~-~-----g~vaPF~~a~~~l~~~~~~I~~  214 (354)
T PF05631_consen  141 AFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFG-F-----GPVAPFDAAIVLLAVAAVLILK  214 (354)
T ss_pred             HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhC-C-----CCcchHHHHHHHHHHHHHHHHh
Confidence            887775 2    23455555666665552 234444555555555555541 1     1233567676666666666655


Q ss_pred             ccCCC
Q 013312          429 MSHTP  433 (445)
Q Consensus       429 ~~~~~  433 (445)
                      ..+|+
T Consensus       215 ~W~EN  219 (354)
T PF05631_consen  215 TWPEN  219 (354)
T ss_pred             ccccc
Confidence            44444

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=98.68  E-value=3e-07  Score=90.24  Aligned_cols=122  Identities=14%  Similarity=0.051  Sum_probs=109.5

Q ss_pred             hhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHhcCCchhHHHH-HHHHhhhhhhh
Q 013312          275 AQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYAT-TAFSVLVVFAT  353 (445)
Q Consensus       275 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~  353 (445)
                      +..+.+.....+..+...++..+|. ++.|.++||+|||+++..+.++..++.+..+++++.+.+... ++.|++.+...
T Consensus       111 ~~~c~~~~~~~~~~s~~~~G~~vG~-~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~  189 (521)
T KOG0255|consen  111 NLVCDSSTLVALGQSLFFLGVLVGS-LIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPL  189 (521)
T ss_pred             ceeeCcHhHHHHHHHHHHHHHHHHH-hhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchh
Confidence            3356677777888888889999988 778999999999999999999999999999999999988887 88899999999


Q ss_pred             hhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013312          354 PSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALF  398 (445)
Q Consensus       354 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~  398 (445)
                      .....+..|.+++++|+.+..+ ......++.+++...+++...+
T Consensus       190 ~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~~W  233 (521)
T KOG0255|consen  190 TVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITRDW  233 (521)
T ss_pred             HHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHhhH
Confidence            9999999999999999999999 8888889999999999888743

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.68  E-value=1.3e-06  Score=81.53  Aligned_cols=181  Identities=14%  Similarity=0.244  Sum_probs=132.0

Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhh----cc-hhHHHHHHHHHHH
Q 013312          251 AAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPIL----GE-AKLLSLGLFAACI  325 (445)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~----~~-~~~~~~~~~~~~~  325 (445)
                      .-...+..++.+.....++..|..|+.|.++..+|.++.+.=+.-++.- ++.|.+.||.    || |+.++.+.+..++
T Consensus        17 Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~D-P~~G~i~D~t~~r~GrfRP~lL~g~ip~~i   95 (467)
T COG2211          17 YGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITD-PIMGFIVDRTRSRWGRFRPWLLWGAIPFAI   95 (467)
T ss_pred             hcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhc-chheeeecccccccccccHHHHHHhHHHHH
Confidence            3445566667777888999999999999999999999999999999998 7779999964    44 4466677676666


Q ss_pred             HHHHHHhcCC-----chhH--HHHHHHHhhhhhhhhhHHHHHhcccC-CccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013312          326 NMFICSISWS-----AWVP--YATTAFSVLVVFATPSFRSIVSKQVG-PNEQGKAQGCISGISSFANIVSPLIFSPLTAL  397 (445)
Q Consensus       326 ~~~~~~~~~~-----~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~  397 (445)
                      ...++...++     .+..  +.-.+++++.........++..+..+ +++|.+..+.-+....+|..+...+.+.+...
T Consensus        96 ~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~  175 (467)
T COG2211          96 VAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKL  175 (467)
T ss_pred             HHHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666665552     1222  22367788888888888888877764 57999999999999999999999999999998


Q ss_pred             hhcCCCCcccchhHHHHHHHHHHHHHHHHHhccCCC
Q 013312          398 FLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMSHTP  433 (445)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (445)
                      .++.+...++... ..+.+++..+..++.++--||+
T Consensus       176 ~g~~~~~~g~~~~-~~~~~vi~~i~~l~~~~~v~ER  210 (467)
T COG2211         176 FGGGDKALGYQGT-ALVLGVIGVILLLFCFFNVKER  210 (467)
T ss_pred             hCCCcchhhHHHH-HHHHHHHHHHHHHHHHHHhhcc
Confidence            8665444443333 3334444444455555444443

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.67  E-value=9.9e-07  Score=84.03  Aligned_cols=154  Identities=19%  Similarity=0.097  Sum_probs=118.0

Q ss_pred             hhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHhcCCchhHHHH-HHHHhhhhhhh
Q 013312          275 AQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYAT-TAFSVLVVFAT  353 (445)
Q Consensus       275 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~  353 (445)
                      +..+....+.+...+...++.+++. +..+.+.||++..+.+....++..+..++....++.+.+++. ++.|+..+..+
T Consensus        74 edl~~~~~~l~~~~t~F~v~Yii~~-~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~w  152 (495)
T KOG2533|consen   74 EDLKLVGNQLGVLDTVFYVGYIIGQ-FPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGW  152 (495)
T ss_pred             cccchhhhhhhhHHHHHHHHHHHHH-hhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccc
Confidence            4467888899999999999999999 788999999996666655555554444444446677777665 88999999999


Q ss_pred             hhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccchhHHHHHHHHHHHHHHHHHhccC
Q 013312          354 PSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMSH  431 (445)
Q Consensus       354 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (445)
                      |....++...+.+++||..+|+......+|+++|+.+...+...- +.....+|.. .|++-+++.+...+..++.-|
T Consensus       153 P~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~-~~~~~~gW~~-~FiI~G~i~~~~gi~~f~~lp  228 (495)
T KOG2533|consen  153 PGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLN-GSGGLAGWRW-LFIIEGVITLVLGIVVFFFLP  228 (495)
T ss_pred             hHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhc-CCCCcCCcee-ehhHHHHHHHHHHheEEEEec
Confidence            999999999999999999999999999999999999998877632 2222223333 467777666666555544433

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=98.67  E-value=1.2e-05  Score=74.47  Aligned_cols=374  Identities=11%  Similarity=0.039  Sum_probs=191.1

Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhcccccc-----ccCchhHhHH
Q 013312           12 HLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSD-----QYGRKAMLTL   86 (445)
Q Consensus        12 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~D-----r~Grr~~l~~   86 (445)
                      .+.+..++.++..++....+|.++++.      .-+.|-.+.|... .....+- .-++|.++.|     |+||||..++
T Consensus         4 lL~~LY~lQGiP~GL~~gsiPflL~~~------~~~~sy~q~~~fS-la~~PfS-lKlLWaPiVDs~y~~~~GRRKSWii   75 (544)
T PF13000_consen    4 LLVLLYFLQGIPLGLAFGSIPFLLQSM------AKKVSYSQQAIFS-LASYPFS-LKLLWAPIVDSVYSKRIGRRKSWII   75 (544)
T ss_pred             HHHHHHHHcCcccccccccchhhhccc------cCCCChhHheeee-eeechhH-HHHhhhhhhhhhcccccCCcchhhh
Confidence            455566677777777777788888751      1122333333311 1111111 1234555555     8999998776


Q ss_pred             HH-HHHHHHHHHHHhhc---------------Cc-ch-----hHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhh
Q 013312           87 PL-TLSIIPLAILAYRR---------------SI-SF-----FYAYYALRTLTAMVCEGSINCLALAYVADNISERQRAS  144 (445)
Q Consensus        87 ~~-~~~~~~~~~~~~~~---------------~~-~~-----~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~  144 (445)
                      -. .+.++..+..+...               +. +.     ...+....++.=+ -.+....+...+.-....+++++.
T Consensus        76 P~Q~l~g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~f-l~ATQDIAVDGWALT~Ls~~n~~~  154 (544)
T PF13000_consen   76 PIQYLSGILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVF-LCATQDIAVDGWALTMLSPENVGY  154 (544)
T ss_pred             HHHHHHHHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHH-HHccCCceeehhhhhhcChhhcch
Confidence            43 34444333333222               00 00     1122233323333 345566677777777778888888


Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhc-------h-------------hhHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCc
Q 013312          145 AFGILLGVLSASFVCGTLAARFLS-------T-------------TSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLT  204 (445)
Q Consensus       145 ~~~~~~~~~~~g~~~g~~l~~~~~-------w-------------~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~  204 (445)
                      +..-...+.+.|..++-.+--.++       |             ..-..+.+...++..++..++-+|.+..+... +.
T Consensus       155 ASTcqtvG~~~Gyfls~tvFlalns~~f~Nky~r~~p~~~glvtl~~yl~fwg~~~l~~T~~v~~~k~E~~~~~~~~-~~  233 (544)
T PF13000_consen  155 ASTCQTVGQTAGYFLSFTVFLALNSPDFCNKYLRSTPSDEGLVTLSGYLKFWGWVFLIVTILVAFFKKEKPHSESLP-KI  233 (544)
T ss_pred             HHHHHHhHhhhhHHHHHHHHHhhCCHHHHHHhcccCCCCCCeeeHHHHHHHHHHHHHHHHHHHheEeecccccccCc-cc
Confidence            777766666666666543321110       0             11122334444444455545556654322211 11


Q ss_pred             cccchhhhcccccCCCCCCcc----cccccccchhHHHHHHhhcchhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCc
Q 013312          205 RPIITEETEGVNQNESNSPVK----IPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFN  280 (445)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  280 (445)
                      +...+...+..+...+.++..    ++....++..+..++.+ |-|.+..+.+..+..-+++..-......-+.| .|++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Y~~l~~il-kLp~V~~li~ilL~~KigF~a~da~T~LKLlE-kG~~  311 (544)
T PF13000_consen  234 EPINKSDGKSKEISIEYDESDVISTEEILSIKDVYKSLWKIL-KLPNVQTLIIILLTAKIGFQANDAVTSLKLLE-KGLS  311 (544)
T ss_pred             cccccccccccccceecccccccchhhhhhHHHHHHHHHHHH-cCchHHHHHHHHHHHHhccccchhhhHHHHHH-cCCC
Confidence            110000000000000000000    00011122344444443 55667777778888888888887777777777 6999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcc---------------------------hhHHHHHHHHHHHHH----HH
Q 013312          281 KNQFADLMLIAGLAGTISQLLFMPLLAPILGE---------------------------AKLLSLGLFAACINM----FI  329 (445)
Q Consensus       281 ~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~---------------------------~~~~~~~~~~~~~~~----~~  329 (445)
                      .++.+.+..+..-..++.. ...++.+.--.+                           -+....++..-.+..    ..
T Consensus       312 KE~LAl~~li~~P~qii~~-~~~~Kws~g~~P~~~~~~~l~~~~~~~~~~~~l~g~~g~L~~Wl~af~gRL~~a~l~~~i  390 (544)
T PF13000_consen  312 KEDLALLVLIDFPFQIILP-YYIGKWSAGSPPLDVDNKALPNFSRANKIIRLLVGDAGALRPWLWAFWGRLVAALLAQLI  390 (544)
T ss_pred             HHHhHHHHHHhhhHHHHHH-HHhhhhhcCCCccccccccccccccccchhhhhhccchhhHHHHHHHHHHHHHHHHHHhe
Confidence            9997776655554555544 333333321111                           011112222111111    11


Q ss_pred             HHhcC--C---chhHHH---H-HHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013312          330 CSISW--S---AWVPYA---T-TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALF  398 (445)
Q Consensus       330 ~~~~~--~---~~~~~~---~-~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~  398 (445)
                      ....+  .   .+.+.+   . .+..+.....+....+.-++..+|..=|+.+.+.|+..++|+-.-..+.=++.|.+
T Consensus       391 V~~fP~~g~v~~~Yf~lvI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~f  468 (544)
T PF13000_consen  391 VYFFPSDGPVPTYYFLLVIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDYF  468 (544)
T ss_pred             EEeCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhhc
Confidence            11122  1   111111   1 33345555567777888899999999999999999999999988888888888865

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>TIGR00788 fbt folate/biopterin transporter

Probab=98.67  E-value=1.8e-06  Score=83.14  Aligned_cols=172  Identities=12%  Similarity=0.095  Sum_probs=114.8

Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhc-----chhHHHHHHHHH
Q 013312          249 SQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILG-----EAKLLSLGLFAA  323 (445)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~  323 (445)
                      ......++..+.. +......+.++++.+|.|+.+++.+.+...+...+-. + .|.++||++     ||+.+..+.++.
T Consensus        29 ~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~-l-~g~l~D~~~i~G~rRr~~l~~~~~l~  105 (468)
T TIGR00788        29 AIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKP-F-AGVMSDTFPLFGYTKRWYLVLSGLLG  105 (468)
T ss_pred             HHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-H-HHHHHHhcCCCCccchHHHHHHHHHH
Confidence            3344456666666 6667778888888899999999999999999988844 4 789999996     666666666655


Q ss_pred             -HHHHHHHHhcCCchhHH--HHHHHHhhhhhhhhhHHHHHhcccCCccchh---HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013312          324 -CINMFICSISWSAWVPY--ATTAFSVLVVFATPSFRSIVSKQVGPNEQGK---AQGCISGISSFANIVSPLIFSPLTAL  397 (445)
Q Consensus       324 -~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~---~~g~~~~~~~~g~~i~~~~~g~l~~~  397 (445)
                       .+....+...++.....  ..++.+++.+........+..|..+ |+++.   ..+.......+|..+++.+.|.+.+.
T Consensus       106 ~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~  184 (468)
T TIGR00788       106 SAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDK  184 (468)
T ss_pred             HHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHh
Confidence             24433333333322222  2355677778888888999999888 55544   34444445568999999999999987


Q ss_pred             hhcCCCCcccchhHHHHHHHHHHHHHHHHHhccCC
Q 013312          398 FLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMSHT  432 (445)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (445)
                      .       ++.. .+.+.+.+.++........+++
T Consensus       185 ~-------~~~~-~f~~~a~l~ll~~~~~~~~~E~  211 (468)
T TIGR00788       185 T-------LTRI-LFLITAALLLLQLFVSNLSKER  211 (468)
T ss_pred             c-------Ccch-HHHHHHHHHHHHHHHHHhcccc
Confidence            5       3333 3455555555554444555543

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.64  E-value=7.2e-06  Score=70.67  Aligned_cols=120  Identities=18%  Similarity=0.125  Sum_probs=93.3

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHHHHHHHHHHHHHHhhcCcc----hhHHHHHHHHHhhh
Q 013312           44 DECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSIS----FFYAYYALRTLTAM  119 (445)
Q Consensus        44 ~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~r~l~G~  119 (445)
                      ++++.+..+...+.++..+|..+ .++.|.+.||+|.|.++.++.+...+|......+-+..    .+|.+.+..++.|.
T Consensus        30 ~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~  108 (250)
T PF06813_consen   30 SRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGN  108 (250)
T ss_pred             HHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHcc
Confidence            45566667788888888899876 58889999999999999999999999988887652211    27777777788877


Q ss_pred             ccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhhhh
Q 013312          120 VCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF  166 (445)
Q Consensus       120 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~  166 (445)
                       +.+....+......+.+| ++||++.|+.-...+++..+=..+...
T Consensus       109 -s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~  153 (250)
T PF06813_consen  109 -SSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSA  153 (250)
T ss_pred             -cHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHH
Confidence             666666666666678887 689999999999999987665544443

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.60  E-value=2.9e-06  Score=75.24  Aligned_cols=167  Identities=17%  Similarity=0.134  Sum_probs=122.0

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhcccccccc-CchhHhHHHH
Q 013312           10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQY-GRKAMLTLPL   88 (445)
Q Consensus        10 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~-Grr~~l~~~~   88 (445)
                      -|.+.+-.-+.....+....-+|.+..|.        +.|..+.|.+.+...+.+...++....+++|. ++|+......
T Consensus       210 aW~vtLfmGlqS~~~Y~~~~WLP~ili~~--------G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~  281 (395)
T COG2807         210 AWQVTLFMGLQSLLYYIVIGWLPAILIDR--------GLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLAL  281 (395)
T ss_pred             hHHHHHHHHhhHHHHHHHHHHHHHHHHHc--------CCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHH
Confidence            34444444455566677778888888653        77778899999999999999999999999965 6677888888


Q ss_pred             HHHHHHHHHHHhhcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccch-hhHHHHHHHHHhhhhhhhhhhhhhh
Q 013312           89 TLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQR-ASAFGILLGVLSASFVCGTLAARFL  167 (445)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r-~~~~~~~~~~~~~g~~~g~~l~~~~  167 (445)
                      ....++...+.+.+....+    ..-++.|+ +.|..+|.....+.+..++.++ ++..++.+....+=..+||.+.|++
T Consensus       282 ~~~l~G~~G~~~~P~~~~~----lw~~llG~-G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~l  356 (395)
T COG2807         282 LLMLVGLVGLLLAPGQLPI----LWALLLGL-GQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFL  356 (395)
T ss_pred             HHHHHHHHHHHHhhhhHHH----HHHHHHhC-ccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHH
Confidence            8899999888888873322    22489999 8888889999999998875443 3444444444444446689998886


Q ss_pred             -----chhhHHHHHHHHHHHHHHHHHH
Q 013312          168 -----STTSAFQAATIVSMLAAAYMRV  189 (445)
Q Consensus       168 -----~w~~~f~~~~~~~~i~~~~~~~  189 (445)
                           +|+......+...++..+..+.
T Consensus       357 hDa~gsw~~~~~~l~~~~i~m~i~Gl~  383 (395)
T COG2807         357 HDATGSWSAPLVLLALATLLMLIFGLR  383 (395)
T ss_pred             HHhcCChHHHHHHHHHHHHHHHHHHhh
Confidence                 7888887777666555554433

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=98.59  E-value=0.00052  Score=65.53  Aligned_cols=246  Identities=12%  Similarity=0.122  Sum_probs=146.3

Q ss_pred             HHHHHHHHHHH-HHHHhhhhccccccccCchhHhHHHHHHHHHHHHHHHhh--cCcch----------------------
Q 013312           52 LSGFQQAIIGL-GTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYR--RSISF----------------------  106 (445)
Q Consensus        52 ~~g~~~s~~~l-~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~----------------------  106 (445)
                      .+.++-....+ ...+......+++||++|.+++-+....+.....++++.  |+.+.                      
T Consensus        59 ~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i  138 (491)
T PF03219_consen   59 VIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFI  138 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHH
Confidence            34444443333 345556779999999999999887777666666655543  11100                      


Q ss_pred             ----hHHHHHHHHHhhhccchhHHH-HHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhhhhhc-------------
Q 013312          107 ----FYAYYALRTLTAMVCEGSINC-LALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLS-------------  168 (445)
Q Consensus       107 ----~~~l~~~r~l~G~~~~g~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~~-------------  168 (445)
                          .|...+..+..-+ -+....+ .-..+.+|.++.+|-.|..+++..+.++|.++++.+...+.             
T Consensus       139 ~~~~~Wt~slfYv~aEl-wgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~~~~~~~~~~~~~  217 (491)
T PF03219_consen  139 AMFRNWTFSLFYVMAEL-WGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSSFLRKSLPAGVDA  217 (491)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccc
Confidence                1222233333333 2222222 46788999999999999999999999999998876655432             


Q ss_pred             hhhHHH-HHHHHH--HHHHHHHHHhccCCCCCCCCcCCccccchhhhcccccCCCCCCcccccccccchhHHHHHHhhcc
Q 013312          169 TTSAFQ-AATIVS--MLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSS  245 (445)
Q Consensus       169 w~~~f~-~~~~~~--~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (445)
                      |..... +..++.  .+........+.+...++++.                  ..+..+++.++.+.+.++.++.+.++
T Consensus       218 ~~~~l~~l~~~v~~~g~~i~~~~~~~~~~vl~~~~~------------------~~~~~~~kk~k~k~s~~es~k~l~kS  279 (491)
T PF03219_consen  218 WELSLNSLMGIVLILGIVIILLYRYMNKNVLTDPRF------------------YPSAKKKKKKKPKMSLKESFKLLLKS  279 (491)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcccc------------------chhhhcccccCCCccHHHHHHHHHhC
Confidence            322221 111111  111122222333221111110                  00011222334445778888889999


Q ss_pred             hhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhh----HHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHH
Q 013312          246 VTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQ----FADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSL  318 (445)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  318 (445)
                      |.+..+.+....++......+...-..+++.+. |+.+    .|......++..++.. ++++.+.+|+|-+....+
T Consensus       280 ~yL~~Ia~lvi~Ygi~inLvE~~wK~~lk~~~~-~~~~ysafmG~~~~~tGivtii~~-~l~~~iir~~GW~~~Ali  354 (491)
T PF03219_consen  280 KYLLCIALLVIAYGISINLVEVVWKSQLKQLYP-DPNDYSAFMGKFSSWTGIVTIIMM-FLSSNIIRRFGWRTAALI  354 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHH
Confidence            999988888888888877777766667766443 3333    2445566677777766 777899999997765544

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.46  E-value=1.3e-05  Score=79.34  Aligned_cols=166  Identities=11%  Similarity=0.064  Sum_probs=117.1

Q ss_pred             hhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHHHHHHHhcCCc---
Q 013312          261 SEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAP-ILGEAKLLSLGLFAACINMFICSISWSA---  336 (445)
Q Consensus       261 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  336 (445)
                      +++++...+..|+.+.+|++...+..++.......-+.. +++++++| ++|+++.+..+.++..++..++.+....   
T Consensus         2 syYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~p-ilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~   80 (654)
T TIGR00926         2 SYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTP-LIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSG   80 (654)
T ss_pred             ceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccc
Confidence            456677788888888899999887777766666666655 77789999 4799999999999999988887764311   


Q ss_pred             -----hhHH-HHHHHHhhhhhhhhhHHHHHhcccCCc---cchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccc
Q 013312          337 -----WVPY-ATTAFSVLVVFATPSFRSIVSKQVGPN---EQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNF  407 (445)
Q Consensus       337 -----~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~---~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~  407 (445)
                           ...+ ...+..+|.+..-|...+...|.++++   .+-+.+.++....++|+.+++.+.+++-+..+....- ..
T Consensus        81 ~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~-~~  159 (654)
T TIGR00926        81 HPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQ-DC  159 (654)
T ss_pred             cchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccC-cc
Confidence                 1122 235567888888999999999888754   3677888888899999999999998887553211100 01


Q ss_pred             chhHHHHHHHHHHHHHHHHHh
Q 013312          408 PGFSIMCIGLASMVAFIQSLM  428 (445)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~  428 (445)
                      ....|.+.+++.+++++....
T Consensus       160 ~~~aF~i~~i~m~ia~lvf~~  180 (654)
T TIGR00926       160 YPLAFGVPAILMILALIVFMA  180 (654)
T ss_pred             hHHHHHHHHHHHHHHHHHHHH
Confidence            222455566666665555443

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.45  E-value=5.8e-06  Score=75.57  Aligned_cols=117  Identities=15%  Similarity=0.146  Sum_probs=92.7

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHhcC---Cc----hhHHHH-HHHHhhhh
Q 013312          279 FNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISW---SA----WVPYAT-TAFSVLVV  350 (445)
Q Consensus       279 ~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~----~~~~~~-~~~g~~~~  350 (445)
                      +++...+.+.....++.++++ +..|++.||+|||++....++++.++.+..+...   ++    +.+.+. .++|+|.|
T Consensus        81 ~ps~i~~~Vn~~A~vGti~GQ-l~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIG  159 (538)
T KOG0252|consen   81 YPSGVLALVNAAALVGTIFGQ-LFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIG  159 (538)
T ss_pred             CCchHHHHHHHHHHHHHHHHH-HHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhcccc
Confidence            556667888899999999999 7779999999999999999998888887655532   11    122222 77899999


Q ss_pred             hhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013312          351 FATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTA  396 (445)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~  396 (445)
                      .-+|...++.+|....+.||.-.+.+..++..|...|..+.-.+..
T Consensus       160 GDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~  205 (538)
T KOG0252|consen  160 GDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSA  205 (538)
T ss_pred             CCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHH
Confidence            9999999999999999999999998888887777666655544443

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.44  E-value=1.2e-05  Score=73.05  Aligned_cols=168  Identities=18%  Similarity=0.177  Sum_probs=129.8

Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhcccccc-ccCchhHhHHHHHH
Q 013312           12 HLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSD-QYGRKAMLTLPLTL   90 (445)
Q Consensus        12 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~D-r~Grr~~l~~~~~~   90 (445)
                      ..+...++..++.++..+++.+|-       .+-++.+..+..-+.+....+..++-...|++.. |.++|+.-.+++..
T Consensus       212 ~f~~fl~l~t~a~~~QD~iLEPyg-------g~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~  284 (403)
T PF03209_consen  212 RFFVFLFLGTLAFFMQDVILEPYG-------GEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLL  284 (403)
T ss_pred             HHHHHHHHHHHHHHhhHHHcCCch-------hHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence            344455566666676666666663       4667888888999999999999999999998888 67888888888888


Q ss_pred             HHHHHHHHHhhcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhhhhh---
Q 013312           91 SIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL---  167 (445)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~---  167 (445)
                      .+++..+..++...++.+.+...-++.|+ +.|.+.....+...|..++++.|..+|.+...+.++..+|..+++..   
T Consensus       285 ~~~~f~lii~a~~~~~~~~~~~~~~l~G~-g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~  363 (403)
T PF03209_consen  285 GALAFALIILAGPLGSPWLFRPGVFLLGL-GNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDL  363 (403)
T ss_pred             HHHHHHHHHHHHhcccchHHHHHHHHHHH-hhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88776665554332227899999999999 99999999999999999999999999999999988887777777652   


Q ss_pred             -----------chhhHHHHHHHHHHHHHHHH
Q 013312          168 -----------STTSAFQAATIVSMLAAAYM  187 (445)
Q Consensus       168 -----------~w~~~f~~~~~~~~i~~~~~  187 (445)
                                 ++...|.+.+++.+++..+.
T Consensus       364 ~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll  394 (403)
T PF03209_consen  364 VRALFGNSPALAYGVVFALEAVLLLAALVLL  394 (403)
T ss_pred             HHHhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence                       35566777776655544433

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=98.43  E-value=1.2e-06  Score=60.78  Aligned_cols=76  Identities=20%  Similarity=0.252  Sum_probs=69.3

Q ss_pred             HHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHHHHHHHHHHHHHH
Q 013312           20 WGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILA   99 (445)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~   99 (445)
                      ..++.+.+.|.+|.+++|        .++|..+.|++.+.+.+|+.++++...++.++..+++.+..+.+...+..+.++
T Consensus         4 mGigRFayTplLP~M~~~--------~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma   75 (85)
T PF06779_consen    4 MGIGRFAYTPLLPLMQAD--------GGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMA   75 (85)
T ss_pred             hhhHHHHHHhHhHHHHHh--------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            356788899999999864        367778999999999999999999999999998899999999999999999999


Q ss_pred             hhcC
Q 013312          100 YRRS  103 (445)
Q Consensus       100 ~~~~  103 (445)
                      +.++
T Consensus        76 ~~~~   79 (85)
T PF06779_consen   76 LTHS   79 (85)
T ss_pred             HHhc
Confidence            9998

Note that many members are hypothetical proteins.

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=98.38  E-value=1.7e-05  Score=74.41  Aligned_cols=183  Identities=16%  Similarity=0.156  Sum_probs=121.3

Q ss_pred             hhhHHHHHHHHHHHhhhhhhHHHHHHHHHh-hcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcc-hhHHHHHHHHH
Q 013312          246 VTLSQAAVVAFFSGLSEGGMQASFLYFLKA-QFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGE-AKLLSLGLFAA  323 (445)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~  323 (445)
                      |.++...+..++.......+..-.-.|+++ ..+.+.+..|+..+...++..+.+ +..++...|.+. |+.++.+.++.
T Consensus        34 rsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~-liF~~Ws~k~~~~k~Pli~s~ii~  112 (488)
T KOG2325|consen   34 RSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFS-LIFGIWSNKTGSVKKPLIVSFLIA  112 (488)
T ss_pred             HhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcc-hhhcccccccCCcccCHHHHHHHH
Confidence            345566666676666665554444455544 346777788999999999999999 777888888775 77788899999


Q ss_pred             HHHHHHHH-hc--CC--chhHHHH-HHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013312          324 CINMFICS-IS--WS--AWVPYAT-TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTAL  397 (445)
Q Consensus       324 ~~~~~~~~-~~--~~--~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~  397 (445)
                      .++.+++. ..  ++  .+.+.++ ++.|+|.+. .....+++++..-.++|.++++..+....+|..+||.+...+...
T Consensus       113 ~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n-~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~L  191 (488)
T KOG2325|consen  113 IIGNLLYLALAYVPNGVKYLMLVARILTGVGVGN-FAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPL  191 (488)
T ss_pred             HHHHHHHHHHHhcccchHHHHHHHHHHcCcCccc-HHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhh
Confidence            98888773 32  22  2333334 555555443 566788888877789999999999988888999988766554432


Q ss_pred             hhcCC------CCcccchhHHHHHHHHHHHHHHHHHhccC
Q 013312          398 FLSKG------APFNFPGFSIMCIGLASMVAFIQSLMMSH  431 (445)
Q Consensus       398 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (445)
                       +.+.      ..+.....+-++.+++.++.+++....-+
T Consensus       192 -g~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~  230 (488)
T KOG2325|consen  192 -GEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFK  230 (488)
T ss_pred             -cCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhhee
Confidence             1221      11222333445555666666555554433

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.34  E-value=9.4e-09  Score=99.01  Aligned_cols=112  Identities=13%  Similarity=0.051  Sum_probs=98.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHhcC---CchhHHHH-HHHHhhhhhhhhhHH
Q 013312          282 NQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISW---SAWVPYAT-TAFSVLVVFATPSFR  357 (445)
Q Consensus       282 ~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~g~~~~~~~~~~~  357 (445)
                      .+.++..+...++..+++ ++.|+++||+|||+.+..+..+..++.++..+++   +.+.+... ++.|++.+...+...
T Consensus        46 ~~~~~~~~~~~~g~~~G~-~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~  124 (451)
T PF00083_consen   46 LLSSLLTSSFFIGAIVGA-LIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSP  124 (451)
T ss_pred             HHHHHHHHHHHhhhcccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            346788889999999998 8889999999999999999999999999999988   77777666 888999999999999


Q ss_pred             HHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 013312          358 SIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPL  394 (445)
Q Consensus       358 ~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l  394 (445)
                      .++.|..|++.||...++.+....+|..++..+.-.+
T Consensus       125 ~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~  161 (451)
T PF00083_consen  125 IYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIV  161 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccc
Confidence            9999999999999999999999888888877654333

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=98.32  E-value=1.3e-05  Score=63.71  Aligned_cols=102  Identities=17%  Similarity=0.188  Sum_probs=84.8

Q ss_pred             HHHHHHHHHhhhhccccccccCchhHhHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCC
Q 013312           58 AIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNI  137 (445)
Q Consensus        58 s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~  137 (445)
                      ++......+.+++.+.+.+++|.|+.++++.+.+.+-.... +-++   .+.++.+-.+.|+ +.+..+++.-.++.+..
T Consensus        44 ai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~---~~~l~~~s~l~G~-~~a~lW~aqg~ylt~~s  118 (156)
T PF05978_consen   44 AILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPN---SYTLYPASALLGF-GAALLWTAQGTYLTSYS  118 (156)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-Hhhh---HHHHHHHHHHHhh-hhHHhhHhhhHHHHHcC
Confidence            44455556666777788999999999999999988655443 4566   7889999999999 99999999999999999


Q ss_pred             CccchhhHHHHHHHHHhhhhhhhhhhh
Q 013312          138 SERQRASAFGILLGVLSASFVCGTLAA  164 (445)
Q Consensus       138 ~~~~r~~~~~~~~~~~~~g~~~g~~l~  164 (445)
                      ++++|++..++.-.....+.++|.++.
T Consensus       119 ~~~~~~~~~~ifw~i~~~s~i~G~~~~  145 (156)
T PF05978_consen  119 TEETIGRNTGIFWAIFQSSLIFGNLFL  145 (156)
T ss_pred             CHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            999999999998888888888876654

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.31  E-value=2.2e-06  Score=59.10  Aligned_cols=70  Identities=21%  Similarity=0.242  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHHHHH
Q 013312           13 LFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTL   90 (445)
Q Consensus        13 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~   90 (445)
                      +-...++...+.+...|.+|.+.+        +.+++..++|.+.++..+...++.|++|.++||++|++..+.....
T Consensus         5 lk~~yf~~f~~~g~~~Pfl~~~~~--------~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~   74 (77)
T PF12832_consen    5 LKAFYFFYFAALGCLYPFLPLYLK--------QLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF   74 (77)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHhhh--------hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence            445566777788888999999975        3488889999999999999999999999999999998887765544

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=98.19  E-value=6.1e-05  Score=71.45  Aligned_cols=131  Identities=15%  Similarity=0.158  Sum_probs=99.5

Q ss_pred             HHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHhhhhhhhhhHHHHHhcccCCccchh
Q 013312          292 GLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGK  371 (445)
Q Consensus       292 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~  371 (445)
                      ++...+.+ ...|.++||+|||..+........+......+.. .|.+. ..-...+.........++++|....++|..
T Consensus        72 ~~~~~i~s-~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~-~~~~~-~~~l~g~~~~~~s~~~a~vadis~~~~R~~  148 (463)
T KOG2816|consen   72 GLLTLISS-PLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG-YWFFL-LLGLSGGFSAIFSVGFAYVADISSEEERSS  148 (463)
T ss_pred             HHHHHHHH-hhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH-HHHhh-hcccccchhhhhhhhhhheeeccchhHHHH
Confidence            66777777 6668999999999998888887777766666554 22222 211234456677888999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccchhHHHHHHHHHHHHHHHHHhccCCC
Q 013312          372 AQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMSHTP  433 (445)
Q Consensus       372 ~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (445)
                      ..|+.+.....+..++|.+.+.+.+..        .....+.+..+..++.........|++
T Consensus       149 ~~gll~~~~~~~~~~~p~~~~~~~~~~--------~~a~~f~ia~~~~~~~~~y~~~~l~Es  202 (463)
T KOG2816|consen  149 SIGLLSGTFGAGLVIGPALGGYLVKFL--------GIALVFLIAAASGILSLLYMLLFLPES  202 (463)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHhc--------CchHHHHHHHHHHHHHHHHHhhccccc
Confidence            999999999999999999999998874        333356777777777777777666554

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.19  E-value=2.4e-05  Score=53.91  Aligned_cols=70  Identities=21%  Similarity=0.251  Sum_probs=59.5

Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHH
Q 013312          251 AAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFA  322 (445)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  322 (445)
                      +-...++...+.+....++|.|+++ .|+|+.++|.+.++..+...++. .+.|+++||.++++........
T Consensus         5 lk~~yf~~f~~~g~~~Pfl~~~~~~-~Gl~~~~iGil~~i~~~~~~~~~-pl~g~laDk~~~~~~~l~~~~~   74 (77)
T PF12832_consen    5 LKAFYFFYFAALGCLYPFLPLYLKQ-LGLSPSQIGILSAIRPLIRFLAP-PLWGFLADKFGKRKVILLGSLF   74 (77)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHhhhh-cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCccHHHHHHHHH
Confidence            3445667777888889999999998 79999999999999999999998 7789999999998877655543

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.16  E-value=8.3e-05  Score=68.16  Aligned_cols=128  Identities=14%  Similarity=-0.009  Sum_probs=90.2

Q ss_pred             HHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHhcCCc---hhHH--HH-
Q 013312          269 FLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSA---WVPY--AT-  342 (445)
Q Consensus       269 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~-  342 (445)
                      ...|.++.|| +...+-+...++.+..+... +.+-|+.||+|-|....++.....++..+=..+..+   ..+.  +. 
T Consensus        67 i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~g-f~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~  144 (480)
T KOG2563|consen   67 INNYVNSFYG-SSSAADWLSMIYMVVSVPFG-FAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTH  144 (480)
T ss_pred             HHHHHHHHhc-chHHHHHHHHHHHHHHHHHh-hHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhH
Confidence            4446667677 66666788888888888887 777899999999999999999999987775554322   1111  11 


Q ss_pred             ---HHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013312          343 ---TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALF  398 (445)
Q Consensus       343 ---~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~  398 (445)
                         .+.+...........-+..--+|+++|+.+..+..+.+.+|.+++..+...+..+.
T Consensus       145 ~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~  203 (480)
T KOG2563|consen  145 TGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSS  203 (480)
T ss_pred             HhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCC
Confidence               22222222222222233455689999999999999999999999988888777653

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.12  E-value=0.00017  Score=64.42  Aligned_cols=135  Identities=14%  Similarity=-0.007  Sum_probs=106.1

Q ss_pred             hhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHhcCCchhHH
Q 013312          261 SEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPY  340 (445)
Q Consensus       261 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (445)
                      ........+..-+.+..|.+..+..++......+..+++ ...+.++|++|||+..........+.-.+-...++...+.
T Consensus        92 m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga-~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~  170 (528)
T KOG0253|consen   92 MEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGA-MVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLC  170 (528)
T ss_pred             HHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhh-hhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhh
Confidence            333445555566677778888888888888888999988 6668999999999998888888777777777777766655


Q ss_pred             HH-HHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013312          341 AT-TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALF  398 (445)
Q Consensus       341 ~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~  398 (445)
                      .. .+.++|.+. .|...++-.|..|..+|+.-+-.. ....+|.+....+.-....++
T Consensus       171 ~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~  227 (528)
T KOG0253|consen  171 VFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNF  227 (528)
T ss_pred             HHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhh
Confidence            54 777888777 899999999999999998877766 778888888887766666655

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=98.10  E-value=0.009  Score=55.87  Aligned_cols=257  Identities=12%  Similarity=0.082  Sum_probs=151.6

Q ss_pred             HHHHHHHHHHHH-HHHHhhhhccccccccCchhHhHHHHHHHHHHHHHHHhhc---------C-----------c-c--h
Q 013312           51 YLSGFQQAIIGL-GTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRR---------S-----------I-S--F  106 (445)
Q Consensus        51 ~~~g~~~s~~~l-~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~---------~-----------~-~--~  106 (445)
                      ..+.++-+..-+ +..+..++.+.++++..|.+++-.-...+....+++++.-         +           . +  +
T Consensus        61 e~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~  140 (509)
T COG3202          61 ESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKW  140 (509)
T ss_pred             hhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCcccee
Confidence            345666666666 6678888999999999999999888777777777776531         1           0 0  0


Q ss_pred             ------hHHHHHHHHHhhhccchhHH-HHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhhhhhc-h---------
Q 013312          107 ------FYAYYALRTLTAMVCEGSIN-CLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLS-T---------  169 (445)
Q Consensus       107 ------~~~l~~~r~l~G~~~~g~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~~-w---------  169 (445)
                            .|..-+.....-+ -+.... -.-.....|.++.+|-.|.++.++...+++..++..+...++ +         
T Consensus       141 ~ili~~~Ws~s~~Yi~aEL-WgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~~~~~~~~~~  219 (509)
T COG3202         141 FILIVGEWSYSLFYIMAEL-WGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKHRDALASEFK  219 (509)
T ss_pred             eeEeecchHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhchhhHhHHHH
Confidence                  1333333333333 222222 256678899999999999999999999999988877766642 2         


Q ss_pred             ----hhHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCccccchhhhcccccCCCCCCcccccccccchhHHHHHHhhcc
Q 013312          170 ----TSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSS  245 (445)
Q Consensus       170 ----~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (445)
                          +..+.+.+..+.++.... .++...-.+.+.-.                 .....+++.++.+....+.++.+.++
T Consensus       220 ~~~~~~~~~vi~~~~~i~~~l~-~~~~r~il~~~~f~-----------------~~~~~kk~~~k~k~~~~~s~k~i~~S  281 (509)
T COG3202         220 DLLLQILFIVIVILGIIAILLY-RYINRNVLTDPLFY-----------------LRAKKKKKKKKLKLGLIESFKMILRS  281 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHHhhcccCcchh-----------------HHHhcccccccccCcHHHHHHHHHhh
Confidence                223333333333333222 22222111111000                 00000112223334667778888899


Q ss_pred             hhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhh---HHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHH
Q 013312          246 VTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQ---FADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFA  322 (445)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  322 (445)
                      |.++.+.+...+++.+...+....-.-.++.+..+.+.   .|.+....++...+.....++.+.+|.|-.....+.-++
T Consensus       282 kyL~~ial~vl~Y~v~inLvE~~wKs~ik~~~~~~~~~~~f~~~~~~~tgvv~~v~~~~~~s~~ir~~GW~~~AlitPiv  361 (509)
T COG3202         282 KYLGAIALLVLAYGVSINLVEGVWKSGIKELYPTTNEYTAFMGRFQIWTGVVSLVVFLFPGSNLIRRVGWFTGALITPLV  361 (509)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHH
Confidence            98888888888887777766655544444433322222   244455666665566667788888988876655444443


Q ss_pred             HHHH
Q 013312          323 ACIN  326 (445)
Q Consensus       323 ~~~~  326 (445)
                      ..++
T Consensus       362 ~lit  365 (509)
T COG3202         362 MLIT  365 (509)
T ss_pred             HHHH
Confidence            3333

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=98.08  E-value=1.4e-05  Score=68.98  Aligned_cols=319  Identities=15%  Similarity=0.061  Sum_probs=156.3

Q ss_pred             HHHHHHHHHHHHHHhhhhccccccccCchhHhHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHhhhccchhHHHHHHHH
Q 013312           53 SGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAY  132 (445)
Q Consensus        53 ~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~  132 (445)
                      .|.+.-+..+...+..+......||+---.=..+..++.+.+..+.+++.+   .++-+.+-.+..+ ++|.--....++
T Consensus        64 tg~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s---~~~sL~GV~~aSi-ssGlGEiTFL~l  139 (409)
T KOG3880|consen   64 TGAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNS---VPMSLLGVVFASI-SSGLGEITFLAL  139 (409)
T ss_pred             cchhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccc---hhHHHhhhhhhhh-cCCcceeehhhh
Confidence            466666677788888888888999875433345567788889999999999   7877777777777 656554333333


Q ss_pred             HhcCCCccchhhHHHHHHHHHhhhhhhhhhhhhh------hchhhHHHHHHHHHHHHHHHHHHhccCCCCCCCC-cCCcc
Q 013312          133 VADNISERQRASAFGILLGVLSASFVCGTLAARF------LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDD-DDLTR  205 (445)
Q Consensus       133 i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~------~~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~-~~~~~  205 (445)
                       +..+++.    ..+.++.+.+.+.++|..--..      ++-|...++...+-++.....++.+++++..... .++..
T Consensus       140 -ss~Y~~~----~i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL~~pes~~~ptl~~~~  214 (409)
T KOG3880|consen  140 -SSRYPSI----VIAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFLLKSPESVYSPTLQPST  214 (409)
T ss_pred             -hccCCCc----eeccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHheeCCCccccCCCcCccc
Confidence             3333322    2333333333333444321111      2446666666655555555555666654433211 11111


Q ss_pred             ccchhhhcccccCCCCCCcccccccccchhHHHHHHhhcchhhHHHHHHHHHHHhhhhhhHH-HHHHHHHh-hcCCch--
Q 013312          206 PIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQA-SFLYFLKA-QFHFNK--  281 (445)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~g~~~--  281 (445)
                      +..++....   .+..+  .+...+.....++.++.+   +.+....+-.+...+..+.++. ..+...-+ ..|++.  
T Consensus       215 ~~~~~~~~~---~~a~e--~~sv~s~~~~~~e~~~~i---~pll~~MvPL~~VY~~EY~INQGl~ell~F~c~~g~sls~  286 (409)
T KOG3880|consen  215 EIIPSQYLP---FEAAE--EKSVPSRRLGLKETLKRI---KPLLKYMVPLALVYFAEYFINQGLAELLLFPCSHGFSLSK  286 (409)
T ss_pred             eeccCCCCc---ccccc--cccCchhhhcHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhhHhhEEeccccCCccch
Confidence            111111000   00000  000111111223322222   1111122222222233333322 12221110 123322  


Q ss_pred             -hhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHH------HHHHHHhcCCchhHHHHHHH-Hhhhhhhh
Q 013312          282 -NQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACI------NMFICSISWSAWVPYATTAF-SVLVVFAT  353 (445)
Q Consensus       282 -~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~-g~~~~~~~  353 (445)
                       .+.-++...+.++..+.+      =+-|+=+-+.+..-.++..+      .-..+.+.++.|.+.+.+++ |+..|..+
T Consensus       287 ~sqYRwyqvlYQlGVFiSR------SS~~~~~~p~l~~LailQ~vNl~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasY  360 (409)
T KOG3880|consen  287 DSQYRWYQVLYQLGVFISR------SSINLFTMPYLWLLAILQFVNLLFFLLQAWYWFTPSIWIVFALILFEGLLGGASY  360 (409)
T ss_pred             hhcchhhheeeeeeEEEEe------ccceEEechHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHH
Confidence             234455555554443322      11122122222222222222      22334456677766665554 77777778


Q ss_pred             hhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 013312          354 PSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPL  394 (445)
Q Consensus       354 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l  394 (445)
                      ....--+.+..++++|--+++.......+|-.++..+.=.+
T Consensus       361 VNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl  401 (409)
T KOG3880|consen  361 VNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL  401 (409)
T ss_pred             HHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence            77777788888889999999988888888777776655333

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=98.01  E-value=0.0039  Score=61.00  Aligned_cols=136  Identities=18%  Similarity=0.157  Sum_probs=96.2

Q ss_pred             HHHHHHHHHHHHHHHHhhhhcccccccc-CchhHhHHHHHHHHHHHHHHHhhcCc----------------------chh
Q 013312           51 YLSGFQQAIIGLGTLVMMPVIGNLSDQY-GRKAMLTLPLTLSIIPLAILAYRRSI----------------------SFF  107 (445)
Q Consensus        51 ~~~g~~~s~~~l~~~~~~~~~G~l~Dr~-Grr~~l~~~~~~~~~~~~~~~~~~~~----------------------~~~  107 (445)
                      ..+.-..+.+.-......+..+.++|-| ||-+++.++.++..++..+..+....                      ...
T Consensus        73 ~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~  152 (571)
T KOG1237|consen   73 GGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQL  152 (571)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHH
Confidence            3344455666666777778899999965 89999999998888886555432110                      013


Q ss_pred             HHHHHHHHHhhhccchhHHHHHHHHHhcCCC---ccc---hhhHHHHHHHHHhhhhhhhhhhhhh----hchhhHHHHHH
Q 013312          108 YAYYALRTLTAMVCEGSINCLALAYVADNIS---ERQ---RASAFGILLGVLSASFVCGTLAARF----LSTTSAFQAAT  177 (445)
Q Consensus       108 ~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~---~~~---r~~~~~~~~~~~~~g~~~g~~l~~~----~~w~~~f~~~~  177 (445)
                      ..++.+.-+..+ |.|..-|...++-+|-++   +++   +...+.++....+.|..++-.+-.+    .+|.+.|.+..
T Consensus       153 ~~~~~~l~lia~-G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~  231 (571)
T KOG1237|consen  153 AVLYGALYLIAL-GAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPT  231 (571)
T ss_pred             HHHHHHHHHhee-ccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHH
Confidence            467777777777 778888999999999998   322   2356788888888888777554433    58999998888


Q ss_pred             HHHHHHHHHH
Q 013312          178 IVSMLAAAYM  187 (445)
Q Consensus       178 ~~~~i~~~~~  187 (445)
                      +...++.++.
T Consensus       232 ~~~~lai~iF  241 (571)
T KOG1237|consen  232 VLNALAILIF  241 (571)
T ss_pred             HHHHHHHHHH
Confidence            7766655444

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=97.97  E-value=0.006  Score=57.93  Aligned_cols=52  Identities=12%  Similarity=0.071  Sum_probs=41.0

Q ss_pred             HHHHHHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHH
Q 013312          339 PYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLI  390 (445)
Q Consensus       339 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~  390 (445)
                      .+...++|+..|-.......+..+.+++++|-.+-.+....-.+|-.+|..+
T Consensus       376 ~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l  427 (437)
T TIGR00939       376 IILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVL  427 (437)
T ss_pred             HHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3345788999999999999999999998888777777777777777777654

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=97.96  E-value=0.00075  Score=53.67  Aligned_cols=106  Identities=16%  Similarity=0.126  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHhcCCchhHHH-HHHHHhhhhhhhhhHHHHHhcccCCc
Q 013312          289 LIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPN  367 (445)
Q Consensus       289 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~  367 (445)
                      ++......+.. ++.|.+.+++|.|+.+.++.+...+-....... +.+.++. ..+.|++.+..+...-.++.+...++
T Consensus        44 ai~Y~~~~~s~-l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~~-~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~  121 (156)
T PF05978_consen   44 AILYGSFAISC-LFAPSIVNKLGPKWSMILGSLGYAIYIASFFYP-NSYTLYPASALLGFGAALLWTAQGTYLTSYSTEE  121 (156)
T ss_pred             HHHHHHHHHHH-HhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHH
Confidence            34444445555 667899999999999999999888766554433 4444444 58889999999999999999999999


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013312          368 EQGKAQGCISGISSFANIVSPLIFSPLTA  396 (445)
Q Consensus       368 ~~g~~~g~~~~~~~~g~~i~~~~~g~l~~  396 (445)
                      .+++..|+.-.+...+..+|..+.-.+..
T Consensus       122 ~~~~~~~ifw~i~~~s~i~G~~~~~~~~~  150 (156)
T PF05978_consen  122 TIGRNTGIFWAIFQSSLIFGNLFLFFIFQ  150 (156)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999888888866555443

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.93  E-value=0.0004  Score=66.12  Aligned_cols=131  Identities=20%  Similarity=0.292  Sum_probs=94.6

Q ss_pred             HHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhh-----cchhHHHHHHHHHHHHHHHHHhcCC----c
Q 013312          266 QASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPIL-----GEAKLLSLGLFAACINMFICSISWS----A  336 (445)
Q Consensus       266 ~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~----~  336 (445)
                      ..-...|+++.+|.++.+...+.....+...+ . ++.|.++|-+     +||+.+.++.++..++.+.++..+.    .
T Consensus         9 ~~~~~~~l~~~l~ls~~~~~~~~~~~~lPw~~-K-p~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~   86 (433)
T PF03092_consen    9 RLAIYPFLKDDLGLSPAQLQRLSSLASLPWSI-K-PLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSA   86 (433)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHhCchHH-h-hhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchh
Confidence            34455677888999999999888888887766 4 5558999975     3555667777777665555555432    2


Q ss_pred             hhHH-HHHHHHhhhhhhhhhHHHHHhcccC--CccchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013312          337 WVPY-ATTAFSVLVVFATPSFRSIVSKQVG--PNEQGKAQGCISGISSFANIVSPLIFSPLTALF  398 (445)
Q Consensus       337 ~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~  398 (445)
                      .... ..++..++.........+...|...  ++.+|..++.......+|+.++..+.|.+.+..
T Consensus        87 ~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~  151 (433)
T PF03092_consen   87 AIAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSF  151 (433)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcC
Confidence            2222 2355567777777777777776652  233889999999999999999999999998875

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=97.83  E-value=0.00026  Score=66.22  Aligned_cols=105  Identities=16%  Similarity=0.136  Sum_probs=80.6

Q ss_pred             hHhHHHHHHHHHHHHHHHhhcCcch------hHHHHHHHHHhhhccchhHHHHHHHHHhcCCCcc---chhhHHHHHHHH
Q 013312           82 AMLTLPLTLSIIPLAILAYRRSISF------FYAYYALRTLTAMVCEGSINCLALAYVADNISER---QRASAFGILLGV  152 (445)
Q Consensus        82 ~~l~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~  152 (445)
                      |.+.++.+++.+|.++..++.....      .+.++++-.+.++ |.|..-|...++.+|.++++   +|.+.+.++..+
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~-G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~   80 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAV-GTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWG   80 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHH-HHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHh-ccccccccHHHHHHHHhcccchhhhhhhHHHHHHH
Confidence            5678888999999888554432111      3678889999999 88999999999999999875   467788889999


Q ss_pred             Hhhhhhhhhhhhhh----hchhhHHHHHHHHHHHHHHHH
Q 013312          153 LSASFVCGTLAARF----LSTTSAFQAATIVSMLAAAYM  187 (445)
Q Consensus       153 ~~~g~~~g~~l~~~----~~w~~~f~~~~~~~~i~~~~~  187 (445)
                      .++|..+++.+..+    .+|.+.|.+.++..++..+..
T Consensus        81 in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f  119 (372)
T PF00854_consen   81 INIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVF  119 (372)
T ss_dssp             HHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHH
Confidence            99999998776665    489999999887766655443

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=97.71  E-value=6.6e-06  Score=79.90  Aligned_cols=172  Identities=10%  Similarity=0.098  Sum_probs=2.6

Q ss_pred             hhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHhcC-----
Q 013312          260 LSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISW-----  334 (445)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  334 (445)
                      ....++....-.-++++++++..+.|++.+.+-++..+.. +...+..+|..|.+.+-.|.++++++.+++++.+     
T Consensus        16 ~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~-~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~   94 (539)
T PF03137_consen   16 MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVV-LFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGP   94 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCC
Confidence            3444444444456677899999999999999999999988 5556888888888888899999999988876511     


Q ss_pred             ------C---------------------------------------chhHHHH-HHHHhhhhhhhhhHHHHHhcccCCcc
Q 013312          335 ------S---------------------------------------AWVPYAT-TAFSVLVVFATPSFRSIVSKQVGPNE  368 (445)
Q Consensus       335 ------~---------------------------------------~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~  368 (445)
                            +                                       .+.+++. ++.|+|....++...+|+-|.+++++
T Consensus        95 y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~  174 (539)
T PF03137_consen   95 YSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKN  174 (539)
T ss_dssp             ---------------------------------------------------------SSS--------------------
T ss_pred             CccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeecccccccc
Confidence                  0                                       0112222 66788888899999999999999999


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC------------CCc--ccchhHHHHHHHHHHHHHHHHHhccCC
Q 013312          369 QGKAQGCISGISSFANIVSPLIFSPLTALFLSKG------------APF--NFPGFSIMCIGLASMVAFIQSLMMSHT  432 (445)
Q Consensus       369 ~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~------------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (445)
                      .+...|+...+..+|-++|-.+++...+.+.+..            .|-  |..++-|++.+.+.++..+....++|+
T Consensus       175 splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~  252 (539)
T PF03137_consen  175 SPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKK  252 (539)
T ss_dssp             ------------------------------------------------------------------------------
T ss_pred             CccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence            9999999999999999999888888775432211            111  122233556666666655555555543

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=97.63  E-value=0.018  Score=52.98  Aligned_cols=113  Identities=10%  Similarity=0.000  Sum_probs=60.9

Q ss_pred             HHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHHHHHHHHHHHHHHh
Q 013312           21 GFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAY  100 (445)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~  100 (445)
                      ...+++....-+.+.++.-..  +.   +.......+....+...+....--.+.-|. |+++.........+....+.+
T Consensus        31 LlpWN~fiTa~~y~~~~~~~~--~~---~~~F~~~~~~~a~i~~ll~~~~n~~~~~~~-~~~~~~~l~~~~il~i~~l~~  104 (406)
T KOG1479|consen   31 LLPWNMFITASDYYYYRFPGY--HN---SKNFTSSYTLAAQIPLLLFNLLNAFLNTRL-RTRVGYLLSLIAILFIVTLDL  104 (406)
T ss_pred             ccchHhhhccHHHHHhhcCCC--ch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence            345677777777777664211  11   445555666666777777777777777772 222222222222222222222


Q ss_pred             hc--Cc----chhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccc
Q 013312          101 RR--SI----SFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQ  141 (445)
Q Consensus       101 ~~--~~----~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~  141 (445)
                      +.  +.    ..+...++.-.+.+. +.+..........++. |++.
T Consensus       105 ~~v~~~~~~~~ff~vt~~~vv~~~~-a~a~~qgs~~G~a~~~-P~~y  149 (406)
T KOG1479|consen  105 ALVKTDTWTNGFFLVTLIIVVLLNL-ANAVVQGSLYGLAGLF-PSEY  149 (406)
T ss_pred             HhhccCCccchhHHHHHHHHHHHhh-hhhhhccchhhhhhcC-CHHH
Confidence            21  11    116666777777887 7777776666655554 5443

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=97.58  E-value=0.0045  Score=55.80  Aligned_cols=136  Identities=16%  Similarity=0.153  Sum_probs=98.3

Q ss_pred             hhhhhhHHHHHHHHHhhcCCch--hhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHhcCC--
Q 013312          260 LSEGGMQASFLYFLKAQFHFNK--NQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWS--  335 (445)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~g~~~--~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  335 (445)
                      ..........+.+..+ .+.+.  ...++......+...++. +..|++.||.|||+.+..+......+.+...+..+  
T Consensus        16 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (338)
T COG0477          16 LDLGLLSPALPLLLST-LSLSSGRLLYGLLLSAFFLGYAIGS-LLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVG   93 (338)
T ss_pred             HhcchHHHHHHHHHHH-cCCCchhHHHHHHHHHHHHHHHHHh-hhhhhccccccchHHHHHHHHHHHHHHHHHHhCccch
Confidence            3444445566666666 44444  467888888888888887 78899999999998777777654444445555544  


Q ss_pred             chhHHHH-HHHHhhhhhhhhhHHHHHhcccCC-ccchhHHHHHHH-HHHHHHHHHHHHHHHHHHh
Q 013312          336 AWVPYAT-TAFSVLVVFATPSFRSIVSKQVGP-NEQGKAQGCISG-ISSFANIVSPLIFSPLTAL  397 (445)
Q Consensus       336 ~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~-~~~~g~~i~~~~~g~l~~~  397 (445)
                      .+..... ...+++.+...+...++..+..|+ ++|+...+.... ...++..++|.+.+.+.+.
T Consensus        94 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (338)
T COG0477          94 LALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA  158 (338)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333 446778888889999999999987 678999998888 5788888888777777765

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.56  E-value=0.00037  Score=68.58  Aligned_cols=188  Identities=9%  Similarity=0.075  Sum_probs=136.1

Q ss_pred             hhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHH
Q 013312          246 VTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACI  325 (445)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  325 (445)
                      +.+..++....+......++....-..++++++++..+.|++...+-++..+.. ....+...|..|.+.+-.|.+++++
T Consensus        96 k~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i-~fVsYfG~r~HrPr~Ig~G~~~m~l  174 (735)
T KOG3626|consen   96 KMFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLI-IFVSYFGSRGHRPRWIGIGLVLMGL  174 (735)
T ss_pred             chHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhh-HhHHHhccccCccceeeechhHHHH
Confidence            333333333333333333555555566788899999999999999999988877 5556888888888888899999999


Q ss_pred             HHHHHHhcC-------------------C--------------------------------chhHHH-H-HHHHhhhhhh
Q 013312          326 NMFICSISW-------------------S--------------------------------AWVPYA-T-TAFSVLVVFA  352 (445)
Q Consensus       326 ~~~~~~~~~-------------------~--------------------------------~~~~~~-~-~~~g~~~~~~  352 (445)
                      +.++.++.+                   +                                +|.+++ . ++.|+|....
T Consensus       175 gsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi  254 (735)
T KOG3626|consen  175 GSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPI  254 (735)
T ss_pred             HHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCC
Confidence            888876520                   0                                122222 2 6678999999


Q ss_pred             hhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-CC--------Cc--ccchhHHHHHHHHHHH
Q 013312          353 TPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSK-GA--------PF--NFPGFSIMCIGLASMV  421 (445)
Q Consensus       353 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~-~~--------~~--~~~~~~~~~~~~~~~~  421 (445)
                      ++...+|+-|.+.+++.....|+...+..+|-++|-.+++.+...+.+. ..        |-  |..+.-|++++.+.++
T Consensus       255 ~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~  334 (735)
T KOG3626|consen  255 FTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLF  334 (735)
T ss_pred             ccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999888765444 11        11  2223346777888888


Q ss_pred             HHHHHHhccCCCC
Q 013312          422 AFIQSLMMSHTPA  434 (445)
Q Consensus       422 ~~~~~~~~~~~~~  434 (445)
                      +.+..++++++.+
T Consensus       335 ~a~p~f~fPk~lp  347 (735)
T KOG3626|consen  335 SAVPLFFFPKELP  347 (735)
T ss_pred             HHHHHHhCcccCc
Confidence            7777777776544

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=97.54  E-value=0.0013  Score=45.74  Aligned_cols=77  Identities=14%  Similarity=0.118  Sum_probs=65.8

Q ss_pred             hhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHhcCCchh
Q 013312          260 LSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWV  338 (445)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (445)
                      ++-+.+...+|...+| .++|..+.|++-+.+.++..++. +...++.++.++++.+..+.+...+..+.+++.++.+.
T Consensus         6 igRFayTplLP~M~~~-~~ls~~~ag~lasaNy~GYL~GA-l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~   82 (85)
T PF06779_consen    6 IGRFAYTPLLPLMQAD-GGLSLSQAGWLASANYLGYLVGA-LLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWL   82 (85)
T ss_pred             hHHHHHHhHhHHHHHh-cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHH
Confidence            4445667788888877 79999999999999999999999 77788888888889999999999999999988877654

Note that many members are hypothetical proteins.

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=97.41  E-value=0.024  Score=52.58  Aligned_cols=134  Identities=13%  Similarity=0.076  Sum_probs=99.8

Q ss_pred             hhhhHHHHHHHHHhh-cCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHhcCCchhHH
Q 013312          262 EGGMQASFLYFLKAQ-FHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPY  340 (445)
Q Consensus       262 ~~~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (445)
                      +-....++..|+.+. .|++..+..--......=+-+...+....+.|.++.|++++.+.+...+...++.+.++.+.+-
T Consensus        19 frPsEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq   98 (412)
T PF01770_consen   19 FRPSEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQ   98 (412)
T ss_pred             cCCCCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHH
Confidence            445678888899886 7999888654333322222233335557889999999999999999888888888888877666


Q ss_pred             HH-HHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013312          341 AT-TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTA  396 (445)
Q Consensus       341 ~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~  396 (445)
                      +. +.+|..... ....++++-..+|+++--++.+......-+|..++..++=.+..
T Consensus        99 ~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs  154 (412)
T PF01770_consen   99 LMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVS  154 (412)
T ss_pred             HHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            65 556655544 67777888888899998999999999988888888866655554

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=97.20  E-value=0.058  Score=51.57  Aligned_cols=126  Identities=11%  Similarity=-0.010  Sum_probs=85.5

Q ss_pred             HHHhhcCC-----chhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHhc----CC-------
Q 013312          272 FLKAQFHF-----NKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSIS----WS-------  335 (445)
Q Consensus       272 ~~~~~~g~-----~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-------  335 (445)
                      -++|....     +.+...++.+..-+...+....+.+++++|++|+++...........++++++.    .+       
T Consensus        28 ~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~  107 (472)
T TIGR00769        28 DTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTAL  107 (472)
T ss_pred             hhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHH
Confidence            34565544     345677777766666666633667899999999998776666555555554432    00       


Q ss_pred             --------------------chhHHHH-HHHHhhhhhhhh-hHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHH
Q 013312          336 --------------------AWVPYAT-TAFSVLVVFATP-SFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSP  393 (445)
Q Consensus       336 --------------------~~~~~~~-~~~g~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~  393 (445)
                                          .|..... ....+......+ ..+++.+|....++..+-.++.....++|..+++.+..+
T Consensus       108 ~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~  187 (472)
T TIGR00769       108 ADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKY  187 (472)
T ss_pred             HHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                1111111 112233333444 778899999999999999999999999999999998888


Q ss_pred             HHHh
Q 013312          394 LTAL  397 (445)
Q Consensus       394 l~~~  397 (445)
                      +.+.
T Consensus       188 ~~~~  191 (472)
T TIGR00769       188 FSKL  191 (472)
T ss_pred             HHHh
Confidence            7753

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PRK03612 spermidine synthase; Provisional

Probab=97.00  E-value=0.083  Score=51.57  Aligned_cols=143  Identities=11%  Similarity=0.083  Sum_probs=84.4

Q ss_pred             HHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHH---HHHHHHHHHHH
Q 013312          252 AVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLS---LGLFAACINMF  328 (445)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~  328 (445)
                      .+..++.+++...+.....-.+...+|-+....+.+.+.+..+..+|+ .+++++.++..++....   ++.+......+
T Consensus        20 ~~~~f~sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs-~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~l   98 (521)
T PRK03612         20 LAAVFVCAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGA-LLSKYLLRDAAAGFVAVELLLALLGGLSALI   98 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHH-HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555555666666666666777788888888888888888888887 56566653322222111   11111111111


Q ss_pred             HH---HhcCCchh--HHHHHHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013312          329 IC---SISWSAWV--PYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTA  396 (445)
Q Consensus       329 ~~---~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~  396 (445)
                      +.   .+......  ....++.++..|+..|....+..+.. .++.|+..|-......+|+.+|+.+.+.+.-
T Consensus        99 l~~~~~~~~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~-~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLl  170 (521)
T PRK03612         99 LYAAFAFQGLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIR-DQHLGHNVATVLAADYLGALVGGLAFPFLLL  170 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccchhhhhhhhHhHHhHHHHHHHHHHHHHHH
Confidence            11   11101111  11124456777777777777665432 2345778888899999999999999998765

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=96.94  E-value=0.029  Score=52.04  Aligned_cols=110  Identities=12%  Similarity=0.159  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHHHH--HHHHH---HHHHHhhcCcchhHHHHHHHHHhhhccchh
Q 013312           50 IYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLT--LSIIP---LAILAYRRSISFFYAYYALRTLTAMVCEGS  124 (445)
Q Consensus        50 ~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~--~~~~~---~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~  124 (445)
                      ..+..+.+.+|.+|-.++.--...+  |+  |+..+.+.+  +..+.   ....-+.++   .|.+++.-+..|+ .+|.
T Consensus       280 r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fips---i~ivf~lif~eGL-lGGa  351 (402)
T PF02487_consen  280 RDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPS---IWIVFVLIFYEGL-LGGA  351 (402)
T ss_pred             HHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHH-hhhH
Confidence            3566777888888877775543322  34  444443332  22222   223334567   8888899999999 7788


Q ss_pred             HHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhhhhh
Q 013312          125 INCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL  167 (445)
Q Consensus       125 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~  167 (445)
                      .+......+.|-.|+++|..++|..+.+-+.|..++..++-.+
T Consensus       352 ~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l  394 (402)
T PF02487_consen  352 SYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL  394 (402)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            8888899999999999999999999999999999988877543

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.84  E-value=0.045  Score=51.76  Aligned_cols=111  Identities=17%  Similarity=0.212  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHHHHhhhhccccc---cccCchhHhHHHHHHHHHHHHHHHhhcCcc---------------hhHHHHHHHH
Q 013312           54 GFQQAIIGLGTLVMMPVIGNLS---DQYGRKAMLTLPLTLSIIPLAILAYRRSIS---------------FFYAYYALRT  115 (445)
Q Consensus        54 g~~~s~~~l~~~~~~~~~G~l~---Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~~~r~  115 (445)
                      ++-.-...++..+++.+.+.++   +|+||++.+.++..+..++.++.-......               .+...++.-+
T Consensus       282 ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~  361 (461)
T KOG3098|consen  282 AIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGF  361 (461)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHH
Confidence            3333334455555556566665   467999999999988888877766532110               1567788889


Q ss_pred             HhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhhhh
Q 013312          116 LTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF  166 (445)
Q Consensus       116 l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~  166 (445)
                      +.|+ +.+......+.++.+.. +++|..+.++...-..++..++-.....
T Consensus       362 l~G~-~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~  410 (461)
T KOG3098|consen  362 LLGF-GDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPY  410 (461)
T ss_pred             HHhh-HHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            9999 99999999999999999 5888899999988888887776555444

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=96.78  E-value=0.002  Score=59.46  Aligned_cols=144  Identities=12%  Similarity=0.079  Sum_probs=106.3

Q ss_pred             hhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhh----hcchh-HHHHHHH
Q 013312          247 TLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPI----LGEAK-LLSLGLF  321 (445)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~-~~~~~~~  321 (445)
                      .+.....+.+...+++..-.++.|+|+++ .|.+....+......-+.+.+.+ .+.|..+||    +|||| .+..+..
T Consensus        33 ~li~v~~ia~Gvqf~wA~elsy~tPyl~~-lGvphk~~S~iw~~gPi~G~~vQ-P~vG~~SDrc~sr~GRRRPfI~~~s~  110 (498)
T KOG0637|consen   33 KLISVASIAAGVQFGWALELSYLTPYLQS-LGVPHKWSSIIWLCGPLSGLLVQ-PLVGSASDRCTSRYGRRRPFILAGSL  110 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccHHHHH-cCCCcccccccccccccccceec-ccccccccccccccccccchHHHhhH
Confidence            34445556666677777778899999988 79999999998888888888988 677899995    66665 5566667


Q ss_pred             HHHHHHHHHHhcCC----------c----hhHHH----HHHHHhhhhhhhhhHHHHHhcccCCccchh-HHHHHHHHHHH
Q 013312          322 AACINMFICSISWS----------A----WVPYA----TTAFSVLVVFATPSFRSIVSKQVGPNEQGK-AQGCISGISSF  382 (445)
Q Consensus       322 ~~~~~~~~~~~~~~----------~----~~~~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~-~~g~~~~~~~~  382 (445)
                      ...+++.++.++.+          .    +.+..    .-++-+..........++..|...++++-+ +++.+..+..+
T Consensus       111 ~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~av  190 (498)
T KOG0637|consen  111 LIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAV  190 (498)
T ss_pred             HHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHh
Confidence            77777777766432          1    11111    123345566677888999999988777777 99999999999


Q ss_pred             HHHHHHHHHH
Q 013312          383 ANIVSPLIFS  392 (445)
Q Consensus       383 g~~i~~~~~g  392 (445)
                      |+.+|-.+.+
T Consensus       191 GnvLGY~~g~  200 (498)
T KOG0637|consen  191 GNVLGYALGS  200 (498)
T ss_pred             cceeeeeccc
Confidence            9998876665

>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism]

Probab=96.62  E-value=0.048  Score=49.20  Aligned_cols=76  Identities=18%  Similarity=0.231  Sum_probs=48.3

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHHH
Q 013312            9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL   88 (445)
Q Consensus         9 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~   88 (445)
                      ....+..+.++...+.-+-.-....++.+..       +-|......-...-....++..++.|.+.|+..|+|++...+
T Consensus        28 ~~i~Ly~gy~lt~wgdR~W~F~VsL~M~~L~-------gnsl~lvAvyglvesgs~lvlg~ivGq~vDg~sr~Kvi~~~L  100 (503)
T KOG2601|consen   28 TVIFLYLGYFLTTWGDRMWEFSVSLFMILLG-------GNSLLLVAVYGLVESGSQLVLGPIVGQWVDGMSRVKVIQTWL  100 (503)
T ss_pred             eeehhhHHHHHhHhhHhHHHHHHHHHHHHHc-------CceehhHHHHHHHHHhHHHhhHHHHHHHhcchhHHHHHHHHH
Confidence            3445666777777666555555566655431       111223333344445667788889999999999999988766


Q ss_pred             HHH
Q 013312           89 TLS   91 (445)
Q Consensus        89 ~~~   91 (445)
                      .+.
T Consensus       101 ~lq  103 (503)
T KOG2601|consen  101 LLQ  103 (503)
T ss_pred             hhc
Confidence            543

>PRK03612 spermidine synthase; Provisional

Probab=96.50  E-value=0.19  Score=49.14  Aligned_cols=117  Identities=14%  Similarity=0.010  Sum_probs=66.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHHHHH---HHHHHHHHHhhcCc--chhHHHHHHHHHhhhcc
Q 013312           47 SLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTL---SIIPLAILAYRRSI--SFFYAYYALRTLTAMVC  121 (445)
Q Consensus        47 ~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~---~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~  121 (445)
                      +.+....+.+.+++..+..+|+.+.|++.++--|+.. ..-..+   ..++..+.......  .....++..-++.++ .
T Consensus        46 G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~-~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~-l  123 (521)
T PRK03612         46 GDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFV-AVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGL-L  123 (521)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence            5555677999999999999999998887643322222 111111   11111111111110  001222334455666 6


Q ss_pred             chhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhhhh
Q 013312          122 EGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF  166 (445)
Q Consensus       122 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~  166 (445)
                      .|...|....+..+... ++-++..|.......+|.++|+++.++
T Consensus       124 ~G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~  167 (521)
T PRK03612        124 IGMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPF  167 (521)
T ss_pred             HHHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHH
Confidence            67777877776655432 234566788888888888888877765

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=96.31  E-value=0.19  Score=43.31  Aligned_cols=50  Identities=0%  Similarity=-0.124  Sum_probs=31.8

Q ss_pred             cchhhHHHHHHHHHhhhhhhh--hhhhh-----h--hchhhHHHHHHHHHHHHHHHHHH
Q 013312          140 RQRASAFGILLGVLSASFVCG--TLAAR-----F--LSTTSAFQAATIVSMLAAAYMRV  189 (445)
Q Consensus       140 ~~r~~~~~~~~~~~~~g~~~g--~~l~~-----~--~~w~~~f~~~~~~~~i~~~~~~~  189 (445)
                      ++|+........++++|.++.  |.+-.     .  -+|++.+.+.+++.++-+++...
T Consensus         2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~i   60 (267)
T PF07672_consen    2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYII   60 (267)
T ss_pred             CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456666666667777777654  43332     1  27999998888887665554433

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=96.22  E-value=0.072  Score=49.86  Aligned_cols=111  Identities=13%  Similarity=0.061  Sum_probs=79.1

Q ss_pred             hHHHHHHHHHHHHHHHHHhc--C-Cc------hhHHH-HHHHHhhhhhhhhhHHHHHhcccCCc---cchhHHHHHHHHH
Q 013312          314 KLLSLGLFAACINMFICSIS--W-SA------WVPYA-TTAFSVLVVFATPSFRSIVSKQVGPN---EQGKAQGCISGIS  380 (445)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~--~-~~------~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~---~~g~~~g~~~~~~  380 (445)
                      +.+..+.++..++.+++..+  + ..      +.++. ..+.++|.|..-|...++..|.++++   +|.+.+..+....
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            45677888888887774442  2 11      33444 46779999999999999999999866   3567778888999


Q ss_pred             HHHHHHHHHHHHHHHHhhhcCCCCcccchhHHHHHHHHHHHHHHHHHhccCC
Q 013312          381 SFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMSHT  432 (445)
Q Consensus       381 ~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (445)
                      ++|..+++...+++-++.       + ....|.+.++..+++.+..+.-++.
T Consensus        82 n~G~~~~~~~~~~i~~~~-------~-~~~~f~i~~~~~~~~~~~f~~~~~~  125 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQQNY-------G-WFLGFGIPAIGMLLALIVFLSGRKR  125 (372)
T ss_dssp             HHHHHHHHHCCCHHHHCS---------HHHHHHHHHHHHHHHHHHHHCCCCT
T ss_pred             hhhhHhhcccchhhcccc-------c-hhhhhhHHHHHHHHHHHHHHhCCcC
Confidence            999999999999998764       2 3334677777777776666554443

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=95.67  E-value=0.0035  Score=56.82  Aligned_cols=52  Identities=17%  Similarity=0.163  Sum_probs=3.7

Q ss_pred             HHHHHHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHH
Q 013312          339 PYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLI  390 (445)
Q Consensus       339 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~  390 (445)
                      .+...++++..|-.......+..+.+++++|..+-.+....-..|-.+|..+
T Consensus       252 ~i~~~l~g~TNGyl~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~l  303 (309)
T PF01733_consen  252 IILMLLFGFTNGYLSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVL  303 (309)
T ss_dssp             ---------------HHHH---------------------------------
T ss_pred             HHHHHHHHHccchhhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3345778899999999999999999998888777776666666666666544

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=95.46  E-value=0.46  Score=44.96  Aligned_cols=132  Identities=14%  Similarity=0.063  Sum_probs=92.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHHHHHHHHHHHHHH---hhcCcc----hhHHHHHHHHHhhh
Q 013312           47 SLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILA---YRRSIS----FFYAYYALRTLTAM  119 (445)
Q Consensus        47 ~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~---~~~~~~----~~~~l~~~r~l~G~  119 (445)
                      +.+...+|..-+...+....+.....++.+|+|..|.=+++.........++.   +.+..+    ....++.+-.+.=+
T Consensus       289 G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~  368 (432)
T PF06963_consen  289 GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRI  368 (432)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHH
Confidence            77778999999999999999999999999999998888877765544433332   222211    12333333333333


Q ss_pred             ccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhhhhhchhhHHHHHHHH
Q 013312          120 VCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIV  179 (445)
Q Consensus       120 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~~w~~~f~~~~~~  179 (445)
                       |-=.+.-+..-++.|..|+++|+...|.-....++-.++-..++-.+....-|.....+
T Consensus       369 -GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~~~P~~F~~lv~i  427 (432)
T PF06963_consen  369 -GLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIFPRPSQFGWLVLI  427 (432)
T ss_pred             -HHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhccCChHhcChHHHh
Confidence             22244567888899999999999999999998888887777666665555445444433

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=94.99  E-value=0.8  Score=41.90  Aligned_cols=142  Identities=12%  Similarity=0.075  Sum_probs=76.9

Q ss_pred             chhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhh-----hhcchhHH-HH
Q 013312          245 SVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAP-----ILGEAKLL-SL  318 (445)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~-~~  318 (445)
                      ++.+..+...+.+.+...+... .+|..++. -|.|-++.+.......=-. + - ++...+.|     |+||||.- .-
T Consensus        30 ~~~illLl~LYllQGiP~GL~~-~iP~lL~a-k~vSyt~~a~fS~ay~P~s-L-K-llWaPiVDs~y~k~~GrrksWvvp  104 (510)
T KOG3574|consen   30 RSSILLLLFLYLLQGIPLGLIG-AIPLLLQA-KGVSYTSQAIFSFAYWPFS-L-K-LLWAPIVDSVYSKRFGRRKSWVVP  104 (510)
T ss_pred             hhhHHHHHHHHHHcCCchhHhh-hhHHHhcC-CCcchhhhhhhhhhhhHHH-H-H-HHHHhhhHHHHHHhhccccceeee
Confidence            3456666666666665555444 88888885 3666666554333221111 1 1 22334555     99998743 33


Q ss_pred             HHHHHHHHHHHHHhcCC---------chhHHH---HHHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHH
Q 013312          319 GLFAACINMFICSISWS---------AWVPYA---TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIV  386 (445)
Q Consensus       319 ~~~~~~~~~~~~~~~~~---------~~~~~~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i  386 (445)
                      +..+....+..+....+         +.....   .+++-+....--.....+......+|+.|-+..........|.++
T Consensus       105 ~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL  184 (510)
T KOG3574|consen  105 CQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFL  184 (510)
T ss_pred             hHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHh
Confidence            44444444444444222         111222   133344444445566667777778888887776666666666666


Q ss_pred             HHHHH
Q 013312          387 SPLIF  391 (445)
Q Consensus       387 ~~~~~  391 (445)
                      +..++
T Consensus       185 ~~~if  189 (510)
T KOG3574|consen  185 GNVVF  189 (510)
T ss_pred             hccee
Confidence            55443

>KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=94.84  E-value=0.012  Score=50.06  Aligned_cols=146  Identities=13%  Similarity=0.011  Sum_probs=80.2

Q ss_pred             cchhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHH
Q 013312          244 SSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAA  323 (445)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  323 (445)
                      ++-.+....+...+.-...+....++|.|..+...++....+++-.+..+.+...+.+..-.--++...|.....|.++-
T Consensus       199 ~~v~~YQiAllYmLsRL~iNiSQaYlaFfviddlqm~qsakAllP~v~Yl~SF~VS~v~~eipwngkrlKayYsaGgiiw  278 (412)
T KOG4830|consen  199 GHVQFYQIALLYMLSRLYINISQAYLAFFVIDDLQMEQSAKALLPMVAYLSSFSVSMVNSEIPWNGKRLKAYYSAGGIIW  278 (412)
T ss_pred             hhhHHHHHHHHHHHHHHHhhhhhhheeeEEeehhhHHHHHhhhhHHHHHHhhhhHHhhcccCCcCcceeeeeeecccHHH
Confidence            33445555666666666667778888998888788877777776666666655554221111111112222333344444


Q ss_pred             HHHHHHHHhcCCchh---HHHHHHHHhhhhhhhhhHHHHHhcccCC--ccchhHHHHHHHHHHHHHHHHHH
Q 013312          324 CINMFICSISWSAWV---PYATTAFSVLVVFATPSFRSIVSKQVGP--NEQGKAQGCISGISSFANIVSPL  389 (445)
Q Consensus       324 ~~~~~~~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~g~~~g~~~~~~~~g~~i~~~  389 (445)
                      ..+...+.+.+..|-   ..+..+.|+..........++.++....  +..+...|..+....+...++-.
T Consensus       279 ifcga~ilLlpr~i~symyAisvfIGIAnAimlvtslsitavli~~~~~~~aFv~GamSF~DKlS~GiA~~  349 (412)
T KOG4830|consen  279 IFCGAVILLLPRGIKSYMYAISVFIGIANAIMLVTSLSITAVLINKNTESGAFVYGAMSFFDKLSNGIAYQ  349 (412)
T ss_pred             HHhhhheeecccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEEehHHHHHhhcccHHHH
Confidence            334333333333332   2223556777766665555555555443  44566677777777776666543

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=93.76  E-value=0.75  Score=39.90  Aligned_cols=134  Identities=16%  Similarity=0.095  Sum_probs=85.8

Q ss_pred             HHHHHHHHHHHHHHhhhhccccccccCch--hHhHHHHHHHHHHHHHHH----hhcCcchhHHHHHHHHHhhhccchhHH
Q 013312           53 SGFQQAIIGLGTLVMMPVIGNLSDQYGRK--AMLTLPLTLSIIPLAILA----YRRSISFFYAYYALRTLTAMVCEGSIN  126 (445)
Q Consensus        53 ~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr--~~l~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~r~l~G~~~~g~~~  126 (445)
                      -|.+.+.+++..++++-+..++..|-..|  +.+.+..+.......+..    .+|+.+....-+++..+.-. +.|.++
T Consensus       284 hGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~-cvGlfw  362 (454)
T KOG4332|consen  284 HGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEA-CVGLFW  362 (454)
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHH-HHhhcc
Confidence            38889999999999999998888876554  344444444443333322    23332223333555566666 778899


Q ss_pred             HHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhh----hhhhchhhHHHHHHHHHHHHHHHH
Q 013312          127 CLALAYVADNISERQRASAFGILLGVLSASFVCGTLA----ARFLSTTSAFQAATIVSMLAAAYM  187 (445)
Q Consensus       127 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l----~~~~~w~~~f~~~~~~~~i~~~~~  187 (445)
                      |..+-+-+++.|+++|...+.++..-.++=.-++-..    +--.+-|..|-++.+...+..+..
T Consensus       363 PSimkmRsqyIPEearstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~~~~~a~i~~  427 (454)
T KOG4332|consen  363 PSIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSAFLFVASILQ  427 (454)
T ss_pred             hHHHHHHHhhCCHHHHhhhhhheechhhHhhhhhheecccccCccccchhhhhhHHHHHHHHHHH
Confidence            9999999999999999998888765544332222111    111355788888877765554443

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=93.61  E-value=5.3  Score=35.98  Aligned_cols=69  Identities=13%  Similarity=0.044  Sum_probs=49.6

Q ss_pred             HHhhhhccccccccCchhHhHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCC
Q 013312           65 LVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNIS  138 (445)
Q Consensus        65 ~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~  138 (445)
                      ...+.+.+.+..++|-|+.+.++...+......- +-+.   +..++.+-...|+ +.+..+..--+|+++...
T Consensus        72 ~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA~N-l~pr---~~tlVPa~~~~G~-aa~p~W~SkgtYlT~~g~  140 (390)
T KOG3097|consen   72 IDSSMFMPLLIRFLGTKWTMVLAVFPYALYIAAN-LEPR---YETLVPAGLVLGM-AAGPIWASKGTYLTPMGQ  140 (390)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhh-cchh---HHhhccHHHhhcc-ccccccccCcceecHHHH
Confidence            4444455578899999999999888876643322 2233   7888999999999 888887766666666554

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=92.43  E-value=1.7  Score=41.51  Aligned_cols=148  Identities=15%  Similarity=0.120  Sum_probs=88.0

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHH-HHHHHHHHHHHHHHHHhhhhccccccccCch-hHhHH
Q 013312            9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAI-YLSGFQQAIIGLGTLVMMPVIGNLSDQYGRK-AMLTL   86 (445)
Q Consensus         9 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr-~~l~~   86 (445)
                      ..+...+..++.++-.-.+.|.+....+.      ++.+.+. +..-....++.++-.+|..+..+. ..-++| +.+.+
T Consensus       270 ki~~~~~~vf~~F~vTL~vFPgv~~~i~~------~~~~~~~~~~~~i~~~~fNvgD~vGR~~~~~~-~~p~~~~~~l~i  342 (437)
T TIGR00939       270 KVWLLAFSVVFVFTVTLSVFPAITTAVTS------SGLGLSNWFYPIICFLLFNLFDWLGRSLTSKF-MWPDEDSRWLPI  342 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCceEEEeec------cCCCCCccHHHHHHHHHHHHHHHHHhhhhhee-EeeCCCccchHH
Confidence            44555555555554444444443222211      1111111 355677888888888888855432 112222 12223


Q ss_pred             HHHH---HHHHHHHHHhhc------CcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhh
Q 013312           87 PLTL---SIIPLAILAYRR------SISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASF  157 (445)
Q Consensus        87 ~~~~---~~~~~~~~~~~~------~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~  157 (445)
                      ..+.   +.-..++|..-+      -..+-+..++.-++.|+ ..|......+.+..+..+++||..+-.+...+..+|.
T Consensus       343 ~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gl-tnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl  421 (437)
T TIGR00939       343 LSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGF-SNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGL  421 (437)
T ss_pred             HHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHH-hhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            2322   222233333221      00115667778999999 8898888999999999999999999888888888888


Q ss_pred             hhhhhhh
Q 013312          158 VCGTLAA  164 (445)
Q Consensus       158 ~~g~~l~  164 (445)
                      .+|..++
T Consensus       422 ~~Gs~l~  428 (437)
T TIGR00939       422 ALGAVLS  428 (437)
T ss_pred             HHHHHHH
Confidence            8887654

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=92.14  E-value=8.9  Score=37.23  Aligned_cols=117  Identities=12%  Similarity=0.012  Sum_probs=72.6

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHhc---------CCc--------------
Q 013312          280 NKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSIS---------WSA--------------  336 (445)
Q Consensus       280 ~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~--------------  336 (445)
                      +++.+.++-...-+...+....+..++++++++.++...........+.++++.         ++.              
T Consensus        56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~  135 (491)
T PF03219_consen   56 GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFK  135 (491)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHH
Confidence            555555554433343333333556799999999987765555554444444331         110              


Q ss_pred             --------hhHHHHHHH-Hhhhhhhh-hhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013312          337 --------WVPYATTAF-SVLVVFAT-PSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTA  396 (445)
Q Consensus       337 --------~~~~~~~~~-g~~~~~~~-~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~  396 (445)
                              |...+..+. -+...... -..+.+.+|..+.++..+..++.....++|..+++.+..++.+
T Consensus       136 ~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  136 GFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                    111111111 11122222 3568889999999999999999999999999999888888777

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=91.63  E-value=7.8  Score=38.46  Aligned_cols=146  Identities=13%  Similarity=0.090  Sum_probs=94.0

Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHHHHH
Q 013312          251 AAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPI-LGEAKLLSLGLFAACINMFI  329 (445)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~  329 (445)
                      .+....+-..+..+....+-.|+.+.++.+...+.-............. +.+++++|- .||-+.+.++.++..++..+
T Consensus        42 il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~-l~g~~laD~f~gry~tI~~~s~i~~~G~~~  120 (571)
T KOG1237|consen   42 ILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLP-LLGAFLADSFLGRYFTINIGSLISLLGLFG  120 (571)
T ss_pred             HHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            3444445555666666777888888888888666655555555555544 777899995 57888888888877777555


Q ss_pred             HHhcC----------------------Cch---hHHH-HHHHHhhhhhhhhhHHHHHhcccCC----ccc--hhHHHHHH
Q 013312          330 CSISW----------------------SAW---VPYA-TTAFSVLVVFATPSFRSIVSKQVGP----NEQ--GKAQGCIS  377 (445)
Q Consensus       330 ~~~~~----------------------~~~---~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~----~~~--g~~~g~~~  377 (445)
                      +....                      +..   .++. ..+..+|.+..-|...++-.|-+++    +.+  ..-+....
T Consensus       121 lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~y  200 (571)
T KOG1237|consen  121 LTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFY  200 (571)
T ss_pred             HHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHH
Confidence            44311                      000   1111 1344568888889999999888872    222  35666777


Q ss_pred             HHHHHHHHHHHHHHHHHHHh
Q 013312          378 GISSFANIVSPLIFSPLTAL  397 (445)
Q Consensus       378 ~~~~~g~~i~~~~~g~l~~~  397 (445)
                      ...+.|..++..+.-++-++
T Consensus       201 f~~~~g~l~a~t~~vyiq~~  220 (571)
T KOG1237|consen  201 FSQNGGALLAQTVLVYIQDN  220 (571)
T ss_pred             HHHHHHHHHHHHHHHhhhhc
Confidence            77777777777666555443

>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function

Probab=91.38  E-value=9.1  Score=33.31  Aligned_cols=29  Identities=7%  Similarity=0.006  Sum_probs=13.0

Q ss_pred             hhhhhHHHHHHHHHhhc----CCchhhHHHHHH
Q 013312          261 SEGGMQASFLYFLKAQF----HFNKNQFADLML  289 (445)
Q Consensus       261 ~~~~~~~~~~~~~~~~~----g~~~~~~g~~~~  289 (445)
                      ..++.+..=..|.+++-    +.|.....+.++
T Consensus       193 vlyGs~fvPv~Yi~~~~~~y~~as~~~ldYvFs  225 (254)
T PF07857_consen  193 VLYGSNFVPVIYIQDHPDIYPGASQNGLDYVFS  225 (254)
T ss_pred             HHHhcccchHHHHHhCccccCCCCCcchheeHH
Confidence            34444333345666643    334444444443

The region concerned is approximately 280 residues long.

>KOG2881 consensus Predicted membrane protein [Function unknown]

Probab=90.74  E-value=5.4  Score=34.20  Aligned_cols=77  Identities=12%  Similarity=0.082  Sum_probs=36.1

Q ss_pred             chhhHHHHHHHHHHHhhhhhhHHHHHHHHHh-hcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHH
Q 013312          245 SVTLSQAAVVAFFSGLSEGGMQASFLYFLKA-QFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAA  323 (445)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  323 (445)
                      .|.++..+...|+.-++.-.....+..-..+ .+|.-   .|- ...-.++..++- +.+..++.|+..|.+.+.+.++.
T Consensus       206 spifikaFsltF~aEwGDRSQlaTI~laA~en~~gV~---~G~-~iGH~lCT~lAV-igGk~lAskIS~rtVt~~ggi~F  280 (294)
T KOG2881|consen  206 SPIFIKAFSLTFLAEWGDRSQLATIALAADENPLGVA---IGA-IIGHALCTGLAV-IGGKYLASKISVRTVTLIGGILF  280 (294)
T ss_pred             cHHHHHHHHHHHHHHhccHHHHHHHHHhcccCcceee---ecc-HHHHHHHHHHHH-hhhHHHhhhheeEEEEEecchhH
Confidence            4556666666666665555443333222222 11111   011 111222222322 33356788998888766665554


Q ss_pred             HHH
Q 013312          324 CIN  326 (445)
Q Consensus       324 ~~~  326 (445)
                      .+.
T Consensus       281 i~F  283 (294)
T KOG2881|consen  281 IIF  283 (294)
T ss_pred             HHH
Confidence            443

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=85.64  E-value=3.5  Score=36.76  Aligned_cols=106  Identities=14%  Similarity=0.075  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHHHHHHhhhhccccccccCchh-Hh-----HHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHhhhccchhH
Q 013312           52 LSGFQQAIIGLGTLVMMPVIGNLSDQYGRKA-ML-----TLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSI  125 (445)
Q Consensus        52 ~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~-~l-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~  125 (445)
                      |.-|.+..|.+|-.+     .+=+-|+=|-+ ..     ..-..++.+.-....+.++   +|..++.-+.-|+ -+|..
T Consensus       289 qYRwyqvlYQlGVFi-----SRSS~~~~~~p~l~~LailQ~vNl~ff~~~a~~~ftps---i~ivf~lI~~EGL-lGGas  359 (409)
T KOG3880|consen  289 QYRWYQVLYQLGVFI-----SRSSINLFTMPYLWLLAILQFVNLLFFLLQAWYWFTPS---IWIVFALILFEGL-LGGAS  359 (409)
T ss_pred             cchhhheeeeeeEEE-----EeccceEEechHHHHHHHHHHHHHHHHHHHHHHHhccH---HHHHHHHHHHHhh-cCchH
Confidence            456777777765433     22222322222 11     1223445555666677888   8888999999999 44555


Q ss_pred             HHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhhhh
Q 013312          126 NCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF  166 (445)
Q Consensus       126 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~  166 (445)
                      +....--+.+-.++++|..+++....+-+.|..++..++-.
T Consensus       360 YVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalp  400 (409)
T KOG3880|consen  360 YVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALP  400 (409)
T ss_pred             HHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhcc
Confidence            55566666676778999999999999999988887766543

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=84.79  E-value=7.6  Score=36.24  Aligned_cols=129  Identities=11%  Similarity=0.127  Sum_probs=83.9

Q ss_pred             hhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHH-HHHHHHHhhhhccccccccCchhHhHHHHHHHHHHHHHHH-----
Q 013312           26 MVVPAITDVTMMALCPGLDECSLAIYLSGFQQAI-IGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILA-----   99 (445)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~-~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~-----   99 (445)
                      ....+.|-+..+.    .++...+.+..-.+... +.+.-.+|.+...++-++= ||...+. .++..+..-++.     
T Consensus       261 VTLsiFPg~~~~~----~~~~~~~~~y~~~~~~l~fN~~d~vG~~~a~~~~~~~-~r~l~i~-v~lR~lfiPlF~~cn~~  334 (406)
T KOG1479|consen  261 VTLSIFPGFCSEV----KSSGLLGDWYALLLVFLSFNVFDLIGSILAALLTWPD-PRKLTIP-VLLRLLFIPLFLLCNYP  334 (406)
T ss_pred             eeeEecchhhccc----ccCcccchhhHHHHHHHHhHHHHHhhhhhhhcccCCC-CceehHH-HHHHHHHHHHHHHhccC
Confidence            3344667666553    12222244566666777 8899999987777766654 3333332 222222222222     


Q ss_pred             ----hhcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhh
Q 013312          100 ----YRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAA  164 (445)
Q Consensus       100 ----~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~  164 (445)
                          +-++   -++.+..-.+.|+ ..|-.....+.+..+..|++++..+-.+.......|...|..++
T Consensus       335 ~~~v~~~~---~~~~~~l~~~lgl-snGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s  399 (406)
T KOG1479|consen  335 PLPVVFES---DGWFIFLMSLLGL-SNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLS  399 (406)
T ss_pred             CCCceecC---chHHHHHHHHHHh-ccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence                2333   5778889999999 88988889999999999999988777777777777777776554

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=83.13  E-value=9.4  Score=36.67  Aligned_cols=142  Identities=13%  Similarity=0.059  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHh-hcCCchhhHHHHH--HHHHHHHHHHHHHHHHHhhhhhcchhHH-HHHHHHHHH
Q 013312          250 QAAVVAFFSGLSEGGMQASFLYFLKA-QFHFNKNQFADLM--LIAGLAGTISQLLFMPLLAPILGEAKLL-SLGLFAACI  325 (445)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~g~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~  325 (445)
                      .+++.+++.+...+....-.|..+++ ..+.|-.+.|.+.  +...-.-++-+.++=....+|+||||.- +-...+.++
T Consensus         4 lL~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~~~fSla~~PfSlKlLWaPiVDs~y~~~~GRRKSWiiP~Q~l~g~   83 (544)
T PF13000_consen    4 LLVLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQAIFSLASYPFSLKLLWAPIVDSVYSKRIGRRKSWIIPIQYLSGI   83 (544)
T ss_pred             HHHHHHHHcCcccccccccchhhhccccCCCChhHheeeeeeechhHHHHhhhhhhhhhcccccCCcchhhhHHHHHHHH
Confidence            34556666666665555678888877 1144444444322  1122222233323333445689998743 334444444


Q ss_pred             HHHHHHhcC-------------------CchhH-----HHHH-HHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHH
Q 013312          326 NMFICSISW-------------------SAWVP-----YATT-AFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGIS  380 (445)
Q Consensus       326 ~~~~~~~~~-------------------~~~~~-----~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~  380 (445)
                      .++.++...                   ....+     ...+ ++-+...---.....+.-....+++++-+.......+
T Consensus        84 ~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqtvG~  163 (544)
T PF13000_consen   84 LMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTCQTVGQ  163 (544)
T ss_pred             HHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHHHHhHh
Confidence            444443221                   01111     1111 1111222222334445555667788777766655555


Q ss_pred             HHHHHHHHHHH
Q 013312          381 SFANIVSPLIF  391 (445)
Q Consensus       381 ~~g~~i~~~~~  391 (445)
                      ++|.+++-.++
T Consensus       164 ~~Gyfls~tvF  174 (544)
T PF13000_consen  164 TAGYFLSFTVF  174 (544)
T ss_pred             hhhHHHHHHHH
Confidence            66666655444

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=82.99  E-value=46  Score=32.07  Aligned_cols=125  Identities=13%  Similarity=0.002  Sum_probs=77.6

Q ss_pred             HHHhhcC---CchhhHHHHHHHHHH-HHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHhc---------CC---
Q 013312          272 FLKAQFH---FNKNQFADLMLIAGL-AGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSIS---------WS---  335 (445)
Q Consensus       272 ~~~~~~g---~~~~~~g~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~---  335 (445)
                      -++|.+.   .+++...++-...-+ .+++.. .+..++.+++.+.++..+-.......++++++.         ++   
T Consensus        48 ~lKDslvv~~~gae~I~FlK~~~vlP~avif~-~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~  126 (509)
T COG3202          48 SLKDSLVVTRQGAESISFLKTWGVLPSAVIFT-IIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEF  126 (509)
T ss_pred             HhhhheEeecCcchhhHHHHHHHhchHHHHHH-HHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHH
Confidence            3455443   345566666555555 333333 666789999999888766666555555555431         11   


Q ss_pred             --------c------------hhHHHHHHHH-hhhhh-hhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHH
Q 013312          336 --------A------------WVPYATTAFS-VLVVF-ATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSP  393 (445)
Q Consensus       336 --------~------------~~~~~~~~~g-~~~~~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~  393 (445)
                              +            |......+.. +-... ..-..+...+|....++..+-.++.+...+++..++..+..+
T Consensus       127 ~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~  206 (509)
T COG3202         127 SRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSW  206 (509)
T ss_pred             HHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence                    1            2111221111 11222 223566778999999999999999999999998888888887


Q ss_pred             HHHh
Q 013312          394 LTAL  397 (445)
Q Consensus       394 l~~~  397 (445)
                      +..+
T Consensus       207 ~~k~  210 (509)
T COG3202         207 LSKH  210 (509)
T ss_pred             Hhhc
Confidence            7663

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	445
2cfq_A	417	Lactose permease; transport, transport mechanism,	2e-06
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417

 Score = 49.2 bits (117), Expect = 2e-06
 Identities = 51/378 (13%), Positives = 98/378 (25%), Gaps = 31/378 (8%)

Query: 54  GFQQAIIGLGTLVMMPVIGNLSDQYG-RKAMLTLPLTLSIIPLAILAYRRSISFFYAYYA 112
           G   A I L +L+  P+ G LSD+ G RK +L +   + ++      +       Y    
Sbjct: 46  GIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILV 105

Query: 113 LRTLTAMVCEGSIN-CLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL---S 168
              +  +      N              R+    FG         +  G      +   +
Sbjct: 106 GSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTIN 165

Query: 169 TTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPV 228
               F   +  +++ A  +     D   +              T       ++S   + +
Sbjct: 166 NQFVFWLGSGCALILAVLLFFAKTDAPSS-------------ATVANAVGANHSAFSLKL 212

Query: 229 CKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLM 288
             ++     L  L    V         F          A+F     A        F  + 
Sbjct: 213 ALELFRQPKLWFLS-LYVIGVSCTYDVFDQQF------ANFFTSFFATGEQGTRVFGYVT 265

Query: 289 LIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAF-SV 347
            +  L      + F PL+   +G    L L      + +   S + SA            
Sbjct: 266 TMGELLNASI-MFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMF 324

Query: 348 LVVFATPSFRSIVSKQVGPNEQGKAQGCISGIS-SFANIVSPLIFSPLTALFLSKGAPFN 406
            V F        ++ Q                    A I   ++   +       G    
Sbjct: 325 EVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI---GFQGA 381

Query: 407 FPGFSIMCIGLASMVAFI 424
           +    ++ +G   +  F 
Sbjct: 382 YLVLGLVALGFTLISVFT 399

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 52/400 (13%), Positives = 107/400 (26%), Gaps = 44/400 (11%)

Query: 42  GLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTL-SIIPLAILAY 100
           G     L   LSG       +       ++G++SD+   +  L   L L + + L +   
Sbjct: 58  GFSRGDLGFALSGI-----SIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFV 112

Query: 101 RRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGIL-----LGVLSA 155
             + S     + L  L     +G         +    S+++R     +      +G    
Sbjct: 113 PWATSSIAVMFVLLFLCGWF-QGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIP 171

Query: 156 SFVCGTLAARFLSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGV 215
             +     A F    +A       ++L A +    ++D   +     +         +  
Sbjct: 172 PLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYN 231

Query: 216 NQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAV--VAFFSGLSEGGMQASFLY-- 271
            + E     K    + +   + L       + ++   V  + +             L   
Sbjct: 232 EKAEQELTAKQIFMQYVLPNKLLWY-----IAIANVFVYLLRYG-----------ILDWS 275

Query: 272 --FLKAQFHFNKNQFADLMLIAGLAGTISQLL-------FMPLLAPILGEAKLLSLGLFA 322
             +LK   HF  ++ +    +   AG    LL                G   +  + +  
Sbjct: 276 PTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIAT 335

Query: 323 ACINMFICSISWSAWVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISS- 381
               M          +      F +              +       G A G        
Sbjct: 336 IVYWMNPAGNPTVDMICMIVIGFLIYGPVM--LIGLHALELAPKKAAGTAAGFTGLFGYL 393

Query: 382 FANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMV 421
             ++ +  I       F   G      G SI+ + L  +V
Sbjct: 394 GGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 2e-04
 Identities = 54/370 (14%), Positives = 92/370 (24%), Gaps = 117/370 (31%)

Query: 8   KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGL--DECSLAIYLSGFQQAIIGLGTL 65
           K L    +T         +     T +++      L  DE   ++ L         L   
Sbjct: 267 KIL----LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE-VKSLLLKYLDCRPQDL--- 318

Query: 66  VMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSI 125
              P          R+ + T P  LSII    +    +    + +     LT ++ E S+
Sbjct: 319 ---P----------REVLTTNPRRLSIIA-ESIRDGLATWDNWKHVNCDKLTTII-ESSL 363

Query: 126 NCLALAYVADNISERQRASAFGI----------LLGVL---SASFVCGTLAARFLSTTSA 172
           N L      +    R+      +          LL ++           +  +       
Sbjct: 364 NVL------EPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY--- 414

Query: 173 FQAATIVSMLA--AAYMRVFLKD-----DVPNDDDDDLTRPIITEETEGVNQNESNSPVK 225
                  S++        + +        V  +++  L R I+         +  N P  
Sbjct: 415 -------SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV---------DHYNIPKT 458

Query: 226 IPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSG--LSEGGMQASFLYFLKA--QFHF-- 279
                 IP   D                     G  L           F      F F  
Sbjct: 459 FDSDDLIPPYLD--------------QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE 504

Query: 280 NK---------------NQFADLML----IAGLAGTISQLL-----FMPLLAPILGEAK- 314
            K               N    L      I        +L+     F+P +   L  +K 
Sbjct: 505 QKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKY 564

Query: 315 --LLSLGLFA 322
             LL + L A
Sbjct: 565 TDLLRIALMA 574

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 4e-04
 Identities = 34/191 (17%), Positives = 56/191 (29%), Gaps = 53/191 (27%)

Query: 109 AYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLS 168
               LR L  +  +   NCL L  V  N+   +  +AF            C     + L 
Sbjct: 230 IQAELRRL--LKSKPYENCL-L--VLLNVQNAKAWNAFN---------LSC-----KILL 270

Query: 169 TTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEG-----VNQNESNSP 223
           TT   Q    +S  AA    + L     +     LT     +E +      ++    + P
Sbjct: 271 TTRFKQVTDFLS--AATTTHISL-----DHHSMTLT----PDEVKSLLLKYLDCRPQDLP 319

Query: 224 VKIPVCKKIP--------SIRDLICLLR--SSVTLSQ--AAVVAFFSGLSEGGMQASFLY 271
            +  V    P        SIRD +        V   +    + +  + L     +  F  
Sbjct: 320 RE--VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR 377

Query: 272 FLKAQFHFNKN 282
                  F  +
Sbjct: 378 L----SVFPPS 384

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	445
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	100.0
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	100.0
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	100.0
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	100.0
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	100.0
2cfq_A	417	Lactose permease; transport, transport mechanism,	100.0
2xut_A	524	Proton/peptide symporter family protein; transport	99.97
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.63
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.62
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.62
2xut_A	524	Proton/peptide symporter family protein; transport	99.57
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.52
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.48
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.18

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=100.00  E-value=4.1e-40  Score=315.37  Aligned_cols=389  Identities=12%  Similarity=0.090  Sum_probs=305.2

Q ss_pred             hhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHH
Q 013312            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP   87 (445)
Q Consensus         8 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~   87 (445)
                      +.+..+++..+...++.....+.+|.+.+        ++ .+..+.|++.+++.++..++++++|+++||+|||+++..+
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~   98 (451)
T 1pw4_A           28 QIFLGIFFGYAAYYLVRKNFALAMPYLVE--------QG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAG   98 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHTSHHHHHHHTTS--------ST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------Hh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHH
Confidence            34556666777788888888888888763        34 5556789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHh----hcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhh
Q 013312           88 LTLSIIPLAILAY----RRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLA  163 (445)
Q Consensus        88 ~~~~~~~~~~~~~----~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l  163 (445)
                      .++.+++.+++++    +++   ++.++++|+++|+ +.+...+...+++.|++|+++|++++++.+...++|.++||.+
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~l~G~-~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~  174 (451)
T 1pw4_A           99 LILAAAVMLFMGFVPWATSS---IAVMFVLLFLCGW-FQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLL  174 (451)
T ss_dssp             HHHHHHHHHHHHHCHHHHSS---SSHHHHHHHHHHH-HHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHH
T ss_pred             HHHHHHHHHHHHhhhhcccc---HHHHHHHHHHHHH-HhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999    899   8999999999999 8888899999999999999999999999999999999999998


Q ss_pred             hhh----hc-hhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCccccchhhhcccccCCCCCCcccccccccchhHHH
Q 013312          164 ARF----LS-TTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDL  238 (445)
Q Consensus       164 ~~~----~~-w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (445)
                      ++.    .+ ||+.|++.+++.++..++..+.+||++++.+.+++.+...+      .++ +.+    ...+++.+.++.
T Consensus       175 ~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~-~~~----~~~~~~~~~~~~  243 (451)
T 1pw4_A          175 FLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKND------YPD-DYN----EKAEQELTAKQI  243 (451)
T ss_dssp             HHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC------------------------CCTHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhccc------ccc-cch----hhhhcccccccc
Confidence            876    47 99999999988887777777888887664432211100000      000 000    000011111222


Q ss_pred             -HHHhhcchhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhh--cchhH
Q 013312          239 -ICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPIL--GEAKL  315 (445)
Q Consensus       239 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~  315 (445)
                       .+...++|.++...+..++..........+.|.|+++.+|+++.+.+.+.+..+++.+++. ++.+++.||+  ++|+.
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~g~l~~~~~~~~~~~  322 (451)
T 1pw4_A          244 FMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGT-LLCGWMSDKVFRGNRGA  322 (451)
T ss_dssp             HHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHTSTTCHHH
T ss_pred             hHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCchh
Confidence             3446678888888888888888888899999999999889999999999999999999988 7889999999  99988


Q ss_pred             HHHHHHHHH-HHHHHHHhcC--CchhHHH-HHHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHH-HHHHHHHH
Q 013312          316 LSLGLFAAC-INMFICSISW--SAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSF-ANIVSPLI  390 (445)
Q Consensus       316 ~~~~~~~~~-~~~~~~~~~~--~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-g~~i~~~~  390 (445)
                      +..+..+.. ++.+.+.+.+  +.+.... ..+.|++.+...+...++..|.+|+++||++.|+.+...++ |..++|.+
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~  402 (451)
T 1pw4_A          323 TGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAI  402 (451)
T ss_dssp             HHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            877776666 6666666553  3333333 35667778888888899999999999999999999999999 99999999


Q ss_pred             HHHHHHhhhcCCCCcccchhHHHHHHHHHHHHHHHHHhc
Q 013312          391 FSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMM  429 (445)
Q Consensus       391 ~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (445)
                      .|.+.+..       ++. ..+.+.+++.+++.+.....
T Consensus       403 ~g~l~~~~-------g~~-~~~~~~~~~~~~~~~~~~~~  433 (451)
T 1pw4_A          403 VGYTVDFF-------GWD-GGFMVMIGGSILAVILLIVV  433 (451)
T ss_dssp             HHHHHHSS-------CSH-HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhc-------CcH-HHHHHHHHHHHHHHHHHHHH
Confidence            99999975       322 23555555555555555443

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=100.00  E-value=2.3e-38  Score=302.08  Aligned_cols=348  Identities=14%  Similarity=0.097  Sum_probs=288.6

Q ss_pred             hhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHH
Q 013312            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP   87 (445)
Q Consensus         8 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~   87 (445)
                      +.+..+.+..+...++.....+.+|.+.++        ++.+..+.|++.+++.++..+++++.|+++||+|||++++.+
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~   97 (438)
T 3o7q_A           26 IPFALLCSLFFLWAVANNLNDILLPQFQQA--------FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITG   97 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------SCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHH--------cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHH
Confidence            345556666777788888889999998654        356667899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH---HhhcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhh
Q 013312           88 LTLSIIPLAIL---AYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAA  164 (445)
Q Consensus        88 ~~~~~~~~~~~---~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~  164 (445)
                      .++.+++.+++   .++++   ++.+++.|++.|+ +.+...+...+++.|++|+++|++++++.+...++|..+||.++
T Consensus        98 ~~~~~~~~~~~~~~~~~~~---~~~l~~~~~l~G~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~  173 (438)
T 3o7q_A           98 LFLYALGAALFWPAAEIMN---YTLFLVGLFIIAA-GLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFG  173 (438)
T ss_dssp             HHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhcccccc---HHHHHHHHHHHHh-hHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999   88899   9999999999999 88999999999999999999999999999999999999999988


Q ss_pred             hhhc------------------------------hhhHHHHHHHHHHHHHHHHHH-hccCCCCCCCCcCCccccchhhhc
Q 013312          165 RFLS------------------------------TTSAFQAATIVSMLAAAYMRV-FLKDDVPNDDDDDLTRPIITEETE  213 (445)
Q Consensus       165 ~~~~------------------------------w~~~f~~~~~~~~i~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~  213 (445)
                      +.+.                              ||+.|++.+.+.++..+...+ ..||++++++++            
T Consensus       174 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~------------  241 (438)
T 3o7q_A          174 QSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSD------------  241 (438)
T ss_dssp             THHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCC------------
T ss_pred             HHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccccccc------------
Confidence            7753                              999998877776555444332 123322211110            


Q ss_pred             ccccCCCCCCcccccccccchhHHHHHHhhcchhhHHHHHHHHHHHhhhhhhHHHHHHH-HHhhcCCchhhHHHHHHHHH
Q 013312          214 GVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYF-LKAQFHFNKNQFADLMLIAG  292 (445)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~g~~~~~~~  292 (445)
                                      ++++..++.++..+++|.++...+..++..........+.|.| +++.+|+++.+.+.......
T Consensus       242 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  305 (438)
T 3o7q_A          242 ----------------AKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTM  305 (438)
T ss_dssp             ----------------SSTTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred             ----------------ccccchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHH
Confidence                            0001122334446678888888888888888888889999999 88878999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHhhhhhhhhhHHHHHhcccCCccchhH
Q 013312          293 LAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKA  372 (445)
Q Consensus       293 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~  372 (445)
                      ++.+++. ++.+++.||+++|+.+..+..+..++.+.+.+.++.+..+...+.+++.+...|...++..|.+|++ ++++
T Consensus       306 ~~~~~~~-~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~  383 (438)
T 3o7q_A          306 VCFFIGR-FTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYG  383 (438)
T ss_dssp             HHHHHHH-HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHH
T ss_pred             HHHHHHH-HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccch
Confidence            9999988 8889999999999999999999888888888877766655567778888889999999999999866 8888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013312          373 QGCISGISSFANIVSPLIFSPLTALF  398 (445)
Q Consensus       373 ~g~~~~~~~~g~~i~~~~~g~l~~~~  398 (445)
                      .++.. ...+++.++|.+.|++.|..
T Consensus       384 ~~~~~-~~~~g~~~~~~~~g~l~~~~  408 (438)
T 3o7q_A          384 SSFIV-MTIIGGGIVTPVMGFVSDAA  408 (438)
T ss_dssp             HHHHH-HTTHHHHHHHHHHHHHHHHH
T ss_pred             hhHHH-HHHHHHHHHHHHHHHHHHHh
Confidence            88777 77899999999999999987

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=100.00  E-value=1.5e-36  Score=293.90  Aligned_cols=408  Identities=14%  Similarity=0.099  Sum_probs=277.3

Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHHHHHHHHHH
Q 013312           16 TVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPL   95 (445)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~   95 (445)
                      +.++..++.+++.+.+|.+.++...+...+.+.+..+.|++.+++.+|..++++++|+++||+|||++++++.+++.++.
T Consensus        20 g~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~   99 (491)
T 4gc0_A           20 GGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISG   99 (491)
T ss_dssp             HHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            44566677788888888887765333334446677889999999999999999999999999999999999999999999


Q ss_pred             HHHHh------------------hcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhh
Q 013312           96 AILAY------------------RRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASF  157 (445)
Q Consensus        96 ~~~~~------------------~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~  157 (445)
                      +++++                  ++|   ++.++++|+++|+ +.|...+...++++|+.|+++|++..+..+.+...|.
T Consensus       100 i~~a~~~~~~~~~~~~~~~~~~~a~~---~~~l~~~R~l~G~-g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~  175 (491)
T 4gc0_A          100 VGSAWPELGFTSINPDNTVPVYLAGY---VPEFVIYRIIGGI-GVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQ  175 (491)
T ss_dssp             HHHHCTTTTTSCSSSSSSCCGGGGGC---HHHHHHHHHHHHH-HHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhhhhhcchhHHHHHHhhh---HHHHHHHHHHHHH-HHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhh
Confidence            99984                  677   9999999999999 8899999999999999999999999999999999999


Q ss_pred             hhhhhhhhh------------hchhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCcccc---chhhhcccccCCCCC
Q 013312          158 VCGTLAARF------------LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPI---ITEETEGVNQNESNS  222 (445)
Q Consensus       158 ~~g~~l~~~------------~~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~  222 (445)
                      ++++.++..            ..||..+.+..+..++. +...+.+||+|+....+++.++.   .++...++..+++..
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~  254 (491)
T 4gc0_A          176 LLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLF-LMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQ  254 (491)
T ss_dssp             HHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHH-HHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhcchhhccccccccccchhhHHHhhhhhhhhhhh-hhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHH
Confidence            888777643            25777777777665444 44457899998743332222222   211111111000000


Q ss_pred             CcccccccccchhHHHHHHhhcchhhHHHHHHHHHHHh-hhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHH
Q 013312          223 PVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGL-SEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLL  301 (445)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~  301 (445)
                      +..+...+.++. .. .....+.+..........+... .......+.|.+.++ .+.+...........++...++. +
T Consensus       255 ~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~  330 (491)
T 4gc0_A          255 EIKHSLDHGRKT-GG-RLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKT-LGASTDIALLQTIIVGVINLTFT-V  330 (491)
T ss_dssp             HHHHHHHHHHHH-TT-HHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHH-H
T ss_pred             HHHHHHHhhhhh-hh-HHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHh-cCCCccchhhHHHHHHHHHHHHH-H
Confidence            000000000000 00 1112233333333333333333 333444555555544 68887777777777888888877 7


Q ss_pred             HHHHhhhhhcchhHHHHHHHHHHHHHHHHHhc---CCc-hhHHH-HHHHHhh-hhhhhhhHHHHHhcccCCccchhHHHH
Q 013312          302 FMPLLAPILGEAKLLSLGLFAACINMFICSIS---WSA-WVPYA-TTAFSVL-VVFATPSFRSIVSKQVGPNEQGKAQGC  375 (445)
Q Consensus       302 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~-~~~~g~~-~~~~~~~~~~~~~~~~~~~~~g~~~g~  375 (445)
                      +.+++.||+|||+.+..+.....++.+.+...   ... +.... ..++..+ .....+..+.+.+|.+|++.|+++.|+
T Consensus       331 ~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~  410 (491)
T 4gc0_A          331 LAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAI  410 (491)
T ss_dssp             HHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHH
T ss_pred             HHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHH
Confidence            78899999999999988888877776665432   222 22222 2222222 333457778899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccchhHHHHHHHHHHHHHHHHHhccCCCC
Q 013312          376 ISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMSHTPA  434 (445)
Q Consensus       376 ~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (445)
                      .+..+++++.+++.+.+.+.+..... .. ...+..+++.+++++++.++.++..||++
T Consensus       411 ~~~~~~~~~~i~~~~~p~l~~~~~~~-~~-~~~~~~~~i~~~~~~~~~i~~~~~~PETk  467 (491)
T 4gc0_A          411 AVAAQWLANYFVSWTFPMMDKNSWLV-AH-FHNGFSYWIYGCMGVLAALFMWKFVPETK  467 (491)
T ss_dssp             HHHHHHHHHHHHHTHHHHHCHHHHHH-HH-HTTCHHHHHHHHHHHHHHHHHHHHCCCCT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-hh-hhhhHHHHHHHHHHHHHHHHHHheecCCC
Confidence            99999999999999888776542100 00 12233466777777777777766666654

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=100.00  E-value=1.7e-34  Score=279.47  Aligned_cols=407  Identities=14%  Similarity=0.024  Sum_probs=284.8

Q ss_pred             HhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccc-cCchhHhH
Q 013312            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQ-YGRKAMLT   85 (445)
Q Consensus         7 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr-~Grr~~l~   85 (445)
                      ++.++.+++..+...++.....+.++.+.++..  .+++++.+..+.|++.+++.++..+++++.|+++|| +|||+++.
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~   89 (491)
T 4aps_A           12 PLGLSTLFMTEMWERFSYYGMRAILLYYMWFLI--STGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVF   89 (491)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--chhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHH
Confidence            456777778888888888888888888886531  123467888899999999999999999999999999 89999999


Q ss_pred             HHHHHHHHHHHHHHhhcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccc--hhhHHHHHHHHHhhhhhhhhhh
Q 013312           86 LPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQ--RASAFGILLGVLSASFVCGTLA  163 (445)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~~g~~l  163 (445)
                      .+.++.+++.+++++++|   ++.+++.|+++|+ +.+...+...++++|++|+++  |++++++++...++|..+||.+
T Consensus        90 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~  165 (491)
T 4aps_A           90 WGGVLIMLGHIVLALPFG---ASALFGSIILIII-GTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLI  165 (491)
T ss_dssp             HHHHHHHHHHHHHHSCCS---TTHHHHHHHHHHH-HHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHH-HHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHH
Confidence            999999999999999999   9999999999999 889899999999999999988  7778888999999999999998


Q ss_pred             hhh----hchhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCccccchhhhcc-------------------cccCCC
Q 013312          164 ARF----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEG-------------------VNQNES  220 (445)
Q Consensus       164 ~~~----~~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~  220 (445)
                      ++.    .+||+.|++.++..++..+...+..|+..++++++.+.+...++.++.                   ..++.+
T Consensus       166 ~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~  245 (491)
T 4aps_A          166 VGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNS  245 (491)
T ss_dssp             HHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCC
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcc
Confidence            876    489999999887766665555444444322221111110000000000                   000000


Q ss_pred             CCCcccc---------------cccccchhHHHHHHhhcchhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHH
Q 013312          221 NSPVKIP---------------VCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFA  285 (445)
Q Consensus       221 ~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g  285 (445)
                      .++....               ..++. ...  ....++....+...+..++..........++|.|.++..+.+..+.+
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (491)
T 4aps_A          246 LPAYINLLTIVAIAIPVFYFAWMISSV-KVT--STEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVS  322 (491)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHC---------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSG
T ss_pred             cccchhhhhHHHHHHHHHHHHHHhhcc-ccc--HHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHH
Confidence            0000000               00000 000  00011122234445555556666677788899999988888867778


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhcchhHHH-----HHHHHHHHHHHHHHhcC---------CchhHHH-HHHHHhhhh
Q 013312          286 DLMLIAGLAGTISQLLFMPLLAPILGEAKLLS-----LGLFAACINMFICSISW---------SAWVPYA-TTAFSVLVV  350 (445)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~---------~~~~~~~-~~~~g~~~~  350 (445)
                      .......+...++. .+.+++.||++||+...     .+..+..++.+.+....         +.+.... ..+.+++.+
T Consensus       323 ~~~~~~~~~~~~~~-~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~  401 (491)
T 4aps_A          323 WFQSLNPLFIMLYT-PFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEM  401 (491)
T ss_dssp             GGTTHHHHHHHHHH-HHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHH
T ss_pred             HHhccchHHHHHHH-HHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHH
Confidence            88888888888887 77789999999876544     67777777766665521         3333333 466788888


Q ss_pred             hhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccchhHHHHHHHHHHHHHHHHHhcc
Q 013312          351 FATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMS  430 (445)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (445)
                      ...+....+..|.+|++.||++.|+.+...++|..++|.+.+.+.+.        +... .+...+.+.+++.+..+...
T Consensus       402 ~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~--------~~~~-~~~~~~~~~~~~~~~~~~~~  472 (491)
T 4aps_A          402 LISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK--------SEVA-YFSYFGLGSVVLGIVLVFLS  472 (491)
T ss_dssp             TTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS--------STTH-HHHHTHHHHHHHHHHHHHC-
T ss_pred             HHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------cHHH-HHHHHHHHHHHHHHHHHHHH
Confidence            88999999999999999999999999999999999999998887653        1222 34555555555555554444


Q ss_pred             CC
Q 013312          431 HT  432 (445)
Q Consensus       431 ~~  432 (445)
                      ++
T Consensus       473 ~~  474 (491)
T 4aps_A          473 KR  474 (491)
T ss_dssp             --
T ss_pred             HH
Confidence            33

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=100.00  E-value=5e-36  Score=279.87  Aligned_cols=341  Identities=13%  Similarity=0.089  Sum_probs=275.3

Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHHHHH
Q 013312           11 SHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTL   90 (445)
Q Consensus        11 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~   90 (445)
                      ..+++..++..++.....|.+|.+.+        +++.+..+.|++.+++.++..+++++.|+++||+|||+++..+..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~   74 (375)
T 2gfp_A            3 LMLVLLVAVGQMAQTIYIPAIADMAR--------DLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSI   74 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHT--------TSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHH--------HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHH
Confidence            45567778888899999999998863        4466778899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcCcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhhhhh---
Q 013312           91 SIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL---  167 (445)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~---  167 (445)
                      .+++.++..++++   ++.+++.|++.|+ +.+...+...+++.|++|+|+|++++++.+....+|..++|.+++.+   
T Consensus        75 ~~~~~~~~~~~~~---~~~l~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~  150 (375)
T 2gfp_A           75 FMLATLVAVTTSS---LTVLIAASAMQGM-GTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTM  150 (375)
T ss_dssp             HHHHHHHHHHHHH---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCH
T ss_pred             HHHHHHHHHHhcc---HHHHHHHHHHHHH-HHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence            9999999999999   9999999999999 88989999999999999999999999999999999999999998874   


Q ss_pred             -chhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCccccchhhhcccccCCCCCCcccccccccchhHHHHHHhhcch
Q 013312          168 -STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSV  246 (445)
Q Consensus       168 -~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (445)
                       +||+.|++.+++.++..+...+.+||++++++++                           ++.+++.++    ..++|
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~----~~~~~  199 (375)
T 2gfp_A          151 WNWRACYLFLLVLCAGVTFSMARWMPETRPVDAPR---------------------------TRLLTSYKT----LFGNS  199 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTCCC---------------------------CCTTTCSTH----HHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCccc---------------------------ccHHHHHHH----HhcCc
Confidence             8999999988887666554556677765432211                           001112223    34556


Q ss_pred             hhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHH-HHH
Q 013312          247 TLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFA-ACI  325 (445)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~  325 (445)
                      .++...+..++..........+.|.|+++.+|.++.+.+.......++.+++. +..+++.||.+++  ...+... ...
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~-~~~~~l~~r~~~~--~~~~~~~~~~~  276 (375)
T 2gfp_A          200 GFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGA-WFAGRPNKRFSTL--MWQSVICCLLA  276 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHH-HHHHTTTTHHHHH--HHHHHHHHHHT
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH--HHHHHHHHHHH
Confidence            77777777888888888888999999998889999999999999999999988 7779999998872  2223322 222


Q ss_pred             HHHH--HHh--cCCchhHHH-HHHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013312          326 NMFI--CSI--SWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALF  398 (445)
Q Consensus       326 ~~~~--~~~--~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~  398 (445)
                      +...  ...  .++.+.... ..+.+++.+...+...++..|..| ++||++.|+.+...++|..++|.+.|.+.+..
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~  353 (375)
T 2gfp_A          277 GLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTG  353 (375)
T ss_dssp             SSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHH
T ss_pred             HHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            2221  111  123343333 466788888899999999999998 89999999999999999999999999998764

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=100.00  E-value=5e-33  Score=262.94  Aligned_cols=384  Identities=15%  Similarity=0.106  Sum_probs=256.2

Q ss_pred             HhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHH
Q 013312            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (445)
Q Consensus         7 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~   86 (445)
                      +|.++.+....++...+.....|.+|.+.++       +++.+..+.|++.+++.++..++++++|+++||+|||++++.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~   78 (417)
T 2cfq_A            6 NTNFWMFGLFFFFYFFIMGAYFPFFPIWLHD-------INHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLW   78 (417)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTTHHHHHHT-------TTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence            4556667777778888888889999999864       235555678999999999999999999999999999999998


Q ss_pred             HHHHHHHHH---HHHHhhcCcchh-HHHHHHHHHhhhccchhHHHHHHHHHhcCCCc--cchhhHHHHHHHHHhhhhhhh
Q 013312           87 PLTLSIIPL---AILAYRRSISFF-YAYYALRTLTAMVCEGSINCLALAYVADNISE--RQRASAFGILLGVLSASFVCG  160 (445)
Q Consensus        87 ~~~~~~~~~---~~~~~~~~~~~~-~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~g  160 (445)
                      +..+.++..   ....+.+.   . ..++..+.+.|+ ..+...+.....+.++.++  ++|+...+.......+|..++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~  154 (417)
T 2cfq_A           79 IITGMLVMFAPFFIFIFGPL---LQYNILVGSIVGGI-YLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALG  154 (417)
T ss_dssp             HHHHTTSCHHHHHHHTHHHH---HHTTCCHHHHGGGS-STTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHH
Confidence            887765532   21222221   1 113455666666 5555444444444444433  456677788877888899999


Q ss_pred             hhhhhhh---chhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCccccchhhhcccccCCCCCCcccccccccchhHH
Q 013312          161 TLAARFL---STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRD  237 (445)
Q Consensus       161 ~~l~~~~---~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (445)
                      |.+++.+   +||+.|++.++..++..+. .+..||+++++.++++             ++++     +   +++.+.++
T Consensus       155 ~~l~~~l~~~~~~~~f~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-------------~~~~-----~---~~~~~~~~  212 (417)
T 2cfq_A          155 ASIVGIMFTINNQFVFWLGSGCALILAVL-LFFAKTDAPSSATVAN-------------AVGA-----N---HSAFSLKL  212 (417)
T ss_dssp             HHHHHHHHHHCSHHHHTTTTTTTTTHHHH-SCSSCCCCSCSSCSSS-------------SSSS-----C---CCCCCHHH
T ss_pred             HHHHHHHHHhchhHHHHHHHHHHHHHHHH-HHHcCccccccccccc-------------cccc-----c---cccccHHH
Confidence            9888764   7999998877664433332 2333332211111000             0000     0   00112223


Q ss_pred             HHHHhhcchhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCC---chhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchh
Q 013312          238 LICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHF---NKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAK  314 (445)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  314 (445)
                      .. ...++|.++...+..+........+..++|.|+.+.++.   +....+.......+..+++. +..+++.||++||+
T Consensus       213 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~g~l~dr~g~~~  290 (417)
T 2cfq_A          213 AL-ELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIM-FFAPLIINRIGGKN  290 (417)
T ss_dssp             HH-HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCHHH
T ss_pred             HH-HHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHH-HHHHHHHHHhcHHH
Confidence            22 244566666655554544445555566788888775542   34456777777778888877 78899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCchhHHHH-HHHHhhhhhhhhhHHHHHhcccCCccchhHHHHH-HHHHHHHHHHHHHHHH
Q 013312          315 LLSLGLFAACINMFICSISWSAWVPYAT-TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCI-SGISSFANIVSPLIFS  392 (445)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~-~~~~~~g~~i~~~~~g  392 (445)
                      .+..+..+.+++.+.+.+.++.+..... .+.+++.+...+....+..|..|++.||++.+.. +..+.+|+.++|.+.|
T Consensus       291 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G  370 (417)
T 2cfq_A          291 ALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAG  370 (417)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHH
Confidence            9988888888877777666665544443 4456666666677788999999999999999984 8888999999999999


Q ss_pred             HHHHhhhcCCCCcccchhHHHHHHHHHHHHHHHHHhccCCC
Q 013312          393 PLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMSHTP  433 (445)
Q Consensus       393 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (445)
                      ++.+..       + ....|.+.+++.+++.+..+...+++
T Consensus       371 ~l~~~~-------g-~~~~f~~~~~~~l~~~~~~~~~~~~~  403 (417)
T 2cfq_A          371 NMYESI-------G-FQGAYLVLGLVALGFTLISVFTLSGP  403 (417)
T ss_dssp             THHHHS-------H-HHHHHHHHHHHHHHHHHHHTTSSCCS
T ss_pred             HHHHhc-------C-cHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence            999864       2 22345666666666666655544433

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.97  E-value=6.9e-31  Score=256.16  Aligned_cols=386  Identities=11%  Similarity=0.038  Sum_probs=242.2

Q ss_pred             hhHhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhcccccccc-CchhH
Q 013312            5 KEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQY-GRKAM   83 (445)
Q Consensus         5 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~-Grr~~   83 (445)
                      ++++.++.+.+..++..++.....+.++.+..+.++++ .+.+.+..+.|++.+++.++..++.++.|+++||+ |||++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~   87 (524)
T 2xut_A            9 KWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLS-IPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNT   87 (524)
T ss_dssp             ----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSC-CSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHH
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence            34566777888888888888888899998887543211 11226667889999999999999999999999999 99999


Q ss_pred             hHHHHHHHHHHHHHHHhhc-CcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHH---HHHHHhhhhhh
Q 013312           84 LTLPLTLSIIPLAILAYRR-SISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGI---LLGVLSASFVC  159 (445)
Q Consensus        84 l~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~g~~~  159 (445)
                      +..+.++.+++.+++++++ +   ++.+++.|++.|+ +.+...+...+++.|++|+++|+++.+.   .+...++|..+
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~  163 (524)
T 2xut_A           88 ILWLSLIYCVGHAFLAIFEHS---VQGFYTGLFLIAL-GSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFF  163 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSC---HHHHHHHHHHHHH-HHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHH-hccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998 8   8999999999999 8888889999999999999999876666   88889999999


Q ss_pred             hhhhhhh----hchhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCccccchh----hhccccc-C------------
Q 013312          160 GTLAARF----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITE----ETEGVNQ-N------------  218 (445)
Q Consensus       160 g~~l~~~----~~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~----~~~~~~~-~------------  218 (445)
                      ||.+++.    .+||+.|++.+++.++..+...+..|+.+++++++++..+..+.    .++...+ +            
T Consensus       164 g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (524)
T 2xut_A          164 ASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKGNIGLVLALIGGV  243 (524)
T ss_dssp             HHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC--------------------CTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhhcccCccchhhhhhhhh
Confidence            9988775    48999999988876665544433223222111111000000000    0000000 0            


Q ss_pred             ------CCCCCcc-----------cccccccchhHHHHH--------HhhcchhhHHHH---HHHHHHHhhhhhhHHHHH
Q 013312          219 ------ESNSPVK-----------IPVCKKIPSIRDLIC--------LLRSSVTLSQAA---VVAFFSGLSEGGMQASFL  270 (445)
Q Consensus       219 ------~~~~~~~-----------~~~~~~~~~~~~~~~--------~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~  270 (445)
                            ++.++..           ..+.+.++++++..+        ...+++......   ....+...........++
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (524)
T 2xut_A          244 SAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWI  323 (524)
T ss_dssp             HHHHTGGGTTTTCSSHHHHHHHHHHHHHHHTGGGTHHHHSCCSCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHH
T ss_pred             hhhhhhcccchhhhhhhhhhhhhhhhcccccchhhHHhhhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhH
Confidence                  0000000           000000000000000        001112221111   111122222222334444


Q ss_pred             HHHHhhcCCch-hhHHHHHHHHHHHHHHHHHHHHHHhh----hhhcc----hhHHHHHHHHHHHHHHHHHhcC-------
Q 013312          271 YFLKAQFHFNK-NQFADLMLIAGLAGTISQLLFMPLLA----PILGE----AKLLSLGLFAACINMFICSISW-------  334 (445)
Q Consensus       271 ~~~~~~~g~~~-~~~g~~~~~~~~~~~~~~~~~~~~l~----~~~~~----~~~~~~~~~~~~~~~~~~~~~~-------  334 (445)
                      .+..+ .+.+. ...+.+.....+...+.. .+.+++.    ||.++    ++.+..+..+.+++.+.+.+..       
T Consensus       324 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  401 (524)
T 2xut_A          324 LQAND-MVKPQWFEPAMMQALNPLLVMLLI-PFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGS  401 (524)
T ss_dssp             HHHHH-SCCCSSSCHHHHHTTSGGGHHHHG-GGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTC
T ss_pred             HhHHh-cCCCeeecHHHHHHHHHHHHHHhH-HHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            55443 33322 134555554444444444 3333432    33332    3456677777777777766532       


Q ss_pred             --CchhHHH-HHHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013312          335 --SAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTAL  397 (445)
Q Consensus       335 --~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~  397 (445)
                        +.+.... ..+.+++.+...+...++..|..|+++||+++|+.+...++|+.++|.+.|.+.+.
T Consensus       402 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~  467 (524)
T 2xut_A          402 ALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSP  467 (524)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSC
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence              3333333 46778888899999999999999999999999999999999999999999988763

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.63  E-value=3.4e-14  Score=136.91  Aligned_cols=174  Identities=13%  Similarity=0.197  Sum_probs=146.3

Q ss_pred             chhhHHHHHHHHHHHhhhhhhHHHHHHHHHhh-----cCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhh-hcchhHHHH
Q 013312          245 SVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQ-----FHFNKNQFADLMLIAGLAGTISQLLFMPLLAPI-LGEAKLLSL  318 (445)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~  318 (445)
                      ++.++......++..+.++....+++.|+++.     +|.++.+.+++.+...++..++. +..|+++|| +|||+.+..
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~g~l~dr~~g~r~~~~~   90 (491)
T 4aps_A           12 PLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSG-TIGGFVADRIIGARPAVFW   90 (491)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHTSCHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHhccccchHHHHH
Confidence            34566677777788888888889999999988     99999999999999999999998 888999999 899999999


Q ss_pred             HHHHHHHHHHHHHhcCCchhHHHH-HHHHhhhhhhhhhHHHHHhcccCCcc--chhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013312          319 GLFAACINMFICSISWSAWVPYAT-TAFSVLVVFATPSFRSIVSKQVGPNE--QGKAQGCISGISSFANIVSPLIFSPLT  395 (445)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~--~g~~~g~~~~~~~~g~~i~~~~~g~l~  395 (445)
                      +..+..++.++..+.++.+.++.. ++.|++.+...+...+++.|.+|+++  |+++.+..+...++|..++|.+.+.+.
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  170 (491)
T 4aps_A           91 GGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQ  170 (491)
T ss_dssp             HHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999998888776665 77799999999999999999999988  778888899999999999999999998


Q ss_pred             HhhhcCCCCcccchhHHHHHHHHHHHHHHHHH
Q 013312          396 ALFLSKGAPFNFPGFSIMCIGLASMVAFIQSL  427 (445)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (445)
                      +..       ++.. .+.+.++..+++.+...
T Consensus       171 ~~~-------g~~~-~f~~~~~~~~~~~~~~~  194 (491)
T 4aps_A          171 EAA-------GYHV-AFSLAAIGMFIGLLVYY  194 (491)
T ss_dssp             HHS-------CHHH-HHHHHHHHHHHHHHHHH
T ss_pred             hhh-------hHHH-HHHHHHHHHHHHHHHHH
Confidence            865       3333 34555554555444443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.62  E-value=3.6e-14  Score=135.18  Aligned_cols=150  Identities=14%  Similarity=0.089  Sum_probs=131.3

Q ss_pred             hhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHH
Q 013312          246 VTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACI  325 (445)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  325 (445)
                      +.+....+..+............+|.+.++ + .++.+.|++.+...++..++. +..|+++||+|||+.+..+.++..+
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~s~~~~g~~~~~~~~~~~~~~-~~~G~l~dr~g~r~~l~~~~~~~~~  104 (451)
T 1pw4_A           28 QIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-G-FSRGDLGFALSGISIAYGFSK-FIMGSVSDRSNPRVFLPAGLILAAA  104 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHTSHHHHHHHTTSS-T-TCSSCHHHHHHHHHHHHHHHH-HHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-ccHhHHHHHHHHHHHHHHHHH-HhHHHHHHhcCchHHHHHHHHHHHH
Confidence            445555666666666666677778887777 6 999999999999999999998 7889999999999999999999999


Q ss_pred             HHHHHHh----cCCchhHHHH-HHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013312          326 NMFICSI----SWSAWVPYAT-TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALF  398 (445)
Q Consensus       326 ~~~~~~~----~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~  398 (445)
                      +.++.++    .++.+.++.. ++.|++.+...+...+++.|.+|+++|++++|+.+....+|..++|.+.+.+.+..
T Consensus       105 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  182 (451)
T 1pw4_A          105 VMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF  182 (451)
T ss_dssp             HHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT
T ss_pred             HHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999988    8888777665 77899999999999999999999999999999999999999999999999988765

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.62  E-value=3.7e-14  Score=134.59  Aligned_cols=145  Identities=11%  Similarity=-0.003  Sum_probs=125.4

Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHH
Q 013312          250 QAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFI  329 (445)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  329 (445)
                      ......+...+.........|.+.++ +|.++.+.|++.+...++..++. +..|+++||+|||+.+..+..+..++.++
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~i~~-~~~G~l~dr~g~r~~l~~~~~~~~~~~~~  107 (438)
T 3o7q_A           30 LLCSLFFLWAVANNLNDILLPQFQQA-FTLTNFQAGLIQSAFYFGYFIIP-IPAGILMKKLSYKAGIITGLFLYALGAAL  107 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH-SCCCSHHHHHHHHHHHHHHHTTH-HHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHH-HhHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence            34444555555555666667775555 89999999999999999999998 77899999999999999999999999888


Q ss_pred             H---HhcCCchhHHHH-HHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013312          330 C---SISWSAWVPYAT-TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTA  396 (445)
Q Consensus       330 ~---~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~  396 (445)
                      .   ...++.+.++.. ++.|++.+...+...+++.|.+|+++|+++.++.+....+|..++|.+.+.+.+
T Consensus       108 ~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  178 (438)
T 3o7q_A          108 FWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLIL  178 (438)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred             HHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8   777888777665 778999999999999999999999999999999999999999999999999983

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.57  E-value=1.1e-13  Score=134.48  Aligned_cols=175  Identities=14%  Similarity=0.056  Sum_probs=143.7

Q ss_pred             chhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcC------CchhhHHHHHHHHHHHHHHHHHHHHHHhhhhh-cchhHHH
Q 013312          245 SVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFH------FNKNQFADLMLIAGLAGTISQLLFMPLLAPIL-GEAKLLS  317 (445)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g------~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~  317 (445)
                      +|.++...+..++..+..+....+++.|+++.+|      +++.+.+++.+...++..++. +..|+++||+ |||+.+.
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~-~~~G~l~dr~~g~r~~~~   89 (524)
T 2xut_A           11 PRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFP-LLGGWIADRFFGKYNTIL   89 (524)
T ss_dssp             --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTH-HHHHHHHTTSSCSHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcchHHHH
Confidence            3556667777888888888888999999988889      999999999999999999988 8889999999 9999999


Q ss_pred             HHHHHHHHHHHHHHhcC-CchhHHHH-HHHHhhhhhhhhhHHHHHhcccCCccchhHHHH---HHHHHHHHHHHHHHHHH
Q 013312          318 LGLFAACINMFICSISW-SAWVPYAT-TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGC---ISGISSFANIVSPLIFS  392 (445)
Q Consensus       318 ~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~---~~~~~~~g~~i~~~~~g  392 (445)
                      .+.++..++.++..+.+ +.+.++.. ++.|++.+...+...+++.|.+|+++|+++.+.   .+...++|..++|.+.+
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~  169 (524)
T 2xut_A           90 WLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMP  169 (524)
T ss_dssp             HHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTST
T ss_pred             HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999998888887 77766554 777899999999999999999999999877666   88999999999999999


Q ss_pred             HHHHhhhcCCCCcccchhHHHHHHHHHHHHHHHHHh
Q 013312          393 PLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLM  428 (445)
Q Consensus       393 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (445)
                      .+.+..       ++.. .+.+.+++.+++.+....
T Consensus       170 ~l~~~~-------g~~~-~f~~~~~~~~~~~~~~~~  197 (524)
T 2xut_A          170 LLLKNF-------GAAV-AFGIPGVLMFVATVFFWL  197 (524)
T ss_dssp             HHHHTS-------CHHH-HHHHHHHHHHHHHHHHHS
T ss_pred             HHhccc-------cHHH-HHHHHHHHHHHHHHHHHH
Confidence            998754       3332 355555555555444443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.52  E-value=6.6e-14  Score=129.97  Aligned_cols=164  Identities=11%  Similarity=0.091  Sum_probs=135.3

Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHH
Q 013312          251 AAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFIC  330 (445)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  330 (445)
                      +....++...........+|.+.++ +|.|+.+.++..+...++..++. +..|+++||+|||+.+..+..+..++.+..
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~-~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~   82 (375)
T 2gfp_A            5 LVLLVAVGQMAQTIYIPAIADMARD-LNVREGAVQSVMGAYLLTYGVSQ-LFYGPISDRVGRRPVILVGMSIFMLATLVA   82 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTT-SSSTTHHHHHHHHHHHHHHHHHH-TTHHHHHTTSCCCCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHH-cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence            4455566666666677777877665 89999999999999999999998 778999999999999999999999999888


Q ss_pred             HhcCCchhHHHH-HHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccch
Q 013312          331 SISWSAWVPYAT-TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPG  409 (445)
Q Consensus       331 ~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~  409 (445)
                      .+.++.+.+... .+.|++.+...+...+++.|..|+++|+++++..+....+|..++|.+.+.+.++.       ++..
T Consensus        83 ~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-------~~~~  155 (375)
T 2gfp_A           83 VTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMW-------NWRA  155 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHH-------HHHH
T ss_pred             HHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhc-------cHHH
Confidence            888877766664 77789999999999999999999999999999999999999999999999988764       2222


Q ss_pred             hHHHHHHHHHHHHHH
Q 013312          410 FSIMCIGLASMVAFI  424 (445)
Q Consensus       410 ~~~~~~~~~~~~~~~  424 (445)
                       .+.+.++..++..+
T Consensus       156 -~~~~~~~~~~~~~~  169 (375)
T 2gfp_A          156 -CYLFLLVLCAGVTF  169 (375)
T ss_dssp             -HHHHHHHHHHHHHC
T ss_pred             -HHHHHHHHHHHHHH
Confidence             34555555555444

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.48  E-value=5.1e-13  Score=125.81  Aligned_cols=165  Identities=12%  Similarity=0.054  Sum_probs=126.9

Q ss_pred             HHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHHHHHHHHHHHHHHhhc
Q 013312           23 ATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRR  102 (445)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~  102 (445)
                      ........+|.+..+..    ++.+.+....|+..++..++..++.++.|+++||+|||+++..+..+.+++.+..++.+
T Consensus       235 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~  310 (417)
T 2cfq_A          235 TYDVFDQQFANFFTSFF----ATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFAT  310 (417)
T ss_dssp             HHHHHHHHHHHHHHHTS----SSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHHH----hccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhc
Confidence            33333344677765532    22234445678888888899999999999999999999999999888888887887777


Q ss_pred             CcchhHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchhhHHHH-HHHHHhhhhhhhhhhhhhh----chhhHHHHHH
Q 013312          103 SISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGI-LLGVLSASFVCGTLAARFL----STTSAFQAAT  177 (445)
Q Consensus       103 ~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~-~~~~~~~g~~~g~~l~~~~----~w~~~f~~~~  177 (445)
                      +   .+.+++..++.++ +.+...+....++.|.+|++.|+++.+. ++....+|..+||.+++.+    +++..|.+.+
T Consensus       311 ~---~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~  386 (417)
T 2cfq_A          311 S---ALEVVILKTLHMF-EVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLG  386 (417)
T ss_dssp             S---HHHHHHHTTHHHH-HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHH
T ss_pred             c---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHH
Confidence            7   7777788888887 6666667778999999999999999998 4777788988999888763    6778888888


Q ss_pred             HHHHHHHHHHHHhccCCC
Q 013312          178 IVSMLAAAYMRVFLKDDV  195 (445)
Q Consensus       178 ~~~~i~~~~~~~~~~e~~  195 (445)
                      ++.++..+..++..||++
T Consensus       387 ~~~l~~~~~~~~~~~~~~  404 (417)
T 2cfq_A          387 LVALGFTLISVFTLSGPG  404 (417)
T ss_dssp             HHHHHHHHHHTTSSCCSC
T ss_pred             HHHHHHHHHHHhhhcCCC
Confidence            777776666555566543

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.18  E-value=5.5e-10  Score=107.39  Aligned_cols=116  Identities=9%  Similarity=-0.104  Sum_probs=98.7

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHh------------------cCCchhHHHH
Q 013312          281 KNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSI------------------SWSAWVPYAT  342 (445)
Q Consensus       281 ~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~  342 (445)
                      +.+.|++.+...++..++. ++.|+++||+|||+.+.++.++..++.+..++                  +++.+.+++.
T Consensus        54 ~~~~g~~~s~~~~G~~iG~-~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~  132 (491)
T 4gc0_A           54 NSLLGFCVASALIGCIIGG-ALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIY  132 (491)
T ss_dssp             HHHHHHHHHTHHHHHHHHH-HHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHH
Confidence            3456788888889999988 88899999999999999999999998887774                  4455556665


Q ss_pred             -HHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013312          343 -TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTAL  397 (445)
Q Consensus       343 -~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~  397 (445)
                       ++.|++.+...+....+++|..|+++|++..+..+.....|..+++.+.......
T Consensus       133 R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~  188 (491)
T 4gc0_A          133 RIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARS  188 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccc
Confidence             8889999999999999999999999999999999999999988888776665543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	445
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	3e-07

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 50.1 bits (118), Expect = 3e-07
 Identities = 56/427 (13%), Positives = 124/427 (29%), Gaps = 14/427 (3%)

Query: 4   EKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLG 63
            +   T   L   +FL  F        +     +A+ P L E   +    GF  + I + 
Sbjct: 13  AEIDPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAM-PYLVEQGFSRGDLGFALSGISIA 71

Query: 64  TLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEG 123
                 ++G++SD+   +  L   L L+   +  + +    +   A   +        +G
Sbjct: 72  YGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQG 131

Query: 124 SINCLALAYVADNISERQRASAFGILLGVLS-ASFVCGTLAARFLSTTSAFQAATIVSML 182
                    +    S+++R     +     +    +   L    ++  + + AA  +   
Sbjct: 132 MGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAF 191

Query: 183 AAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLL 242
            A  + +F    + +        PI   + +  +     +       +++ + +  +  +
Sbjct: 192 CAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAE------QELTAKQIFMQYV 245

Query: 243 RSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLF 302
             +  L   A+   F  L   G+      +LK   HF  ++ +    +   AG    LL 
Sbjct: 246 LPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLC 305

Query: 303 MPLL-----APILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSFR 357
             +                   +  A I  ++                  L+        
Sbjct: 306 GWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIG 365

Query: 358 SIVSKQVGPNEQGKAQGCISGISSF-ANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIG 416
               +       G A G          ++ +  I       F   G      G SI+ + 
Sbjct: 366 LHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVI 425

Query: 417 LASMVAF 423
           L  +V  
Sbjct: 426 LLIVVMI 432

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	445
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	100.0
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	100.0
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.56
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.43

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=9.6e-38  Score=296.07  Aligned_cols=342  Identities=13%  Similarity=0.074  Sum_probs=259.9

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHHHHHHHHHHHHHHhhcCcc-hhHHHHHHHHHhhhccch
Q 013312           45 ECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSIS-FFYAYYALRTLTAMVCEG  123 (445)
Q Consensus        45 ~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~~g  123 (445)
                      |.+.+..+.|++.+++.+++.++++++|+++||+|||+++..+.++.+++.++++++++.. .++.+++.|++.|+ +.+
T Consensus        53 ~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~  131 (447)
T d1pw4a_          53 EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGW-FQG  131 (447)
T ss_dssp             SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHH-HHH
T ss_pred             HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHH-hhh
Confidence            3477778899999999999999999999999999999999999999999999988764211 17899999999999 888


Q ss_pred             hHHHHHHHHHhcCCCccchhhHHHHHHHHHhhhhhhhhhhhhh-----hchhhHHHHHHHHHHHHHHHHHHhccCCCCCC
Q 013312          124 SINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF-----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPND  198 (445)
Q Consensus       124 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~-----~~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~  198 (445)
                      ...+...+++.|++|+++|++++++.+....+|..++|.+++.     .+||+.|++.+.+.++..++.++.++|+|++.
T Consensus       132 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (447)
T d1pw4a_         132 MGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSC  211 (447)
T ss_dssp             HTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTT
T ss_pred             hhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccchhhc
Confidence            8889999999999999999999999999999999999887765     27999999999888887777777787776544


Q ss_pred             CCcCCccccchhhhcccccCCCCCCcccccccccchhHHHHHHhhcchhhHHHHHHHHHHHhhhhhhHHHHHHHHHhhcC
Q 013312          199 DDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFH  278 (445)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  278 (445)
                      +...+.+..          ++..++..++.+++....+...+...+++.++......++..........+.|.|+.+..+
T Consensus       212 ~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (447)
T d1pw4a_         212 GLPPIEEYK----------NDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKH  281 (447)
T ss_dssp             CCCSCTTTC----------CC-------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSC
T ss_pred             ccchhhhhh----------hhcccchhhccccccchhhHHHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhcccccc
Confidence            332111100          0000000011111111223334456778888888888888888888889999999999899


Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHH---HHHHHHHHhc--CCchhHHH-HHHHHhhhhhh
Q 013312          279 FNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAA---CINMFICSIS--WSAWVPYA-TTAFSVLVVFA  352 (445)
Q Consensus       279 ~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~~~-~~~~g~~~~~~  352 (445)
                      ++..+.+.......+..+++. ++.+++.||.++++.........   .++.......  .+.+.... ..+.+++.+..
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  360 (447)
T d1pw4a_         282 FALDKSSWAYFLYEYAGIPGT-LLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGP  360 (447)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHH
T ss_pred             cccchhhhhhhcchhhhhhhh-hhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999988 88899999998765433333222   2222222222  23333333 35567777778


Q ss_pred             hhhHHHHHhcccCCccchhHHHHHHHHHHH-HHHHHHHHHHHHHHhh
Q 013312          353 TPSFRSIVSKQVGPNEQGKAQGCISGISSF-ANIVSPLIFSPLTALF  398 (445)
Q Consensus       353 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-g~~i~~~~~g~l~~~~  398 (445)
                      .+....+..|.+|++.||++.|+.+...++ |..++|.+.|++.|+.
T Consensus       361 ~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~  407 (447)
T d1pw4a_         361 VMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF  407 (447)
T ss_dssp             HHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            888899999999999999999999999887 4567899999999976

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.1e-32  Score=255.70  Aligned_cols=390  Identities=14%  Similarity=0.071  Sum_probs=269.4

Q ss_pred             hHhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhH
Q 013312            6 EIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLT   85 (445)
Q Consensus         6 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~   85 (445)
                      |+|+++.+.+..++..++.++..|.+|.+++|       +.+.+..+.|++.+++.++..++++++|+++||+|||++++
T Consensus         5 kn~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~-------~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~   77 (417)
T d1pv7a_           5 KNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHD-------INHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLL   77 (417)
T ss_dssp             HSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHH
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHH
Confidence            46788999999999999999999999998764       34777789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhcCcch-hHHHHHHHHHhhhccchhHHHHHHHHHhcCCCc--cchhhHHHHHHHHHhhhhhhhhh
Q 013312           86 LPLTLSIIPLAILAYRRSISF-FYAYYALRTLTAMVCEGSINCLALAYVADNISE--RQRASAFGILLGVLSASFVCGTL  162 (445)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~-~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~g~~  162 (445)
                      .+..+..++..+..+..+... ....+..+.+.+. ..+...+.......+..++  +++.+..+........+..++|.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (417)
T d1pv7a_          78 WIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGI-YLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGAS  156 (417)
T ss_dssp             HHHHHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTT-TGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhh-cccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccc
Confidence            999999998888887766211 2233455555555 4443333333333333332  34556677777888888888888


Q ss_pred             hhhhh---chhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCccccchhhhcccccCCCCCCcccccccccchhHHHH
Q 013312          163 AARFL---STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLI  239 (445)
Q Consensus       163 l~~~~---~w~~~f~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (445)
                      +++.+   +|+..+........+..+...+..+|++++++++++.                      +..++....+. .
T Consensus       157 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~-~  213 (417)
T d1pv7a_         157 IVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAV----------------------GANHSAFSLKL-A  213 (417)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHH----------------------HSCCCCCCHHH-H
T ss_pred             cccccccccccccccchhhHHHHHHHHHHHHhcccccchhhhhhh----------------------hhhcccccccc-c
Confidence            88764   6677776666666666666666777765544432110                      00000111111 1


Q ss_pred             HHhhcchhhHHHHHHHHHHHhhhhhhHHHHHHHHHh---hcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHH
Q 013312          240 CLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKA---QFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLL  316 (445)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  316 (445)
                      ....+++..+....................+.+...   ..+.+....+.......++..++. ...+++.||.++++.+
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~r~~~~~~~  292 (417)
T d1pv7a_         214 LELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIM-FFAPLIINRIGGKNAL  292 (417)
T ss_dssp             HHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHH-TTHHHHHHHHCHHHHH
T ss_pred             ccccccccccchhhhhHHHHHHHHhhhccccccccccccccccchhhhcccccccccccccch-hhhhhhhcccccccch
Confidence            112233333333333333333333333333333322   223455566777777778888877 7779999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCchhHHHH-HHHHhhhhhhhhhHHHHHhcccCCccchhHHHHHH-HHHHHHHHHHHHHHHHH
Q 013312          317 SLGLFAACINMFICSISWSAWVPYAT-TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCIS-GISSFANIVSPLIFSPL  394 (445)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~-~~~~~g~~i~~~~~g~l  394 (445)
                      ..+..+..++.+.+.+.++.+..+.. .+.+++.+...+...++++|.+|++.||++.|+.. ....+|..++|.+.|++
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l  372 (417)
T d1pv7a_         293 LLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNM  372 (417)
T ss_dssp             HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998888888776664 67789999999999999999999999999999865 55679999999999999


Q ss_pred             HHhhhcCCCCcccchhHHHHHHHHHHHHHHH-HHhccCCCCC
Q 013312          395 TALFLSKGAPFNFPGFSIMCIGLASMVAFIQ-SLMMSHTPAS  435 (445)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  435 (445)
                      .|+.       ++... +.+.+++.++..+. .+.++++.+.
T Consensus       373 ~~~~-------g~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~  406 (417)
T d1pv7a_         373 YESI-------GFQGA-YLVLGLVALGFTLISVFTLSGPGPL  406 (417)
T ss_dssp             HHHH-------CHHHH-HHHHHHHHHHHHHHHHHHSCCSSCT
T ss_pred             HHHH-------CHHHH-HHHHHHHHHHHHHHHHHhhcCCCcc
Confidence            9987       44443 45555555544444 4445444443

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.56  E-value=1.5e-13  Score=128.32  Aligned_cols=128  Identities=16%  Similarity=0.125  Sum_probs=111.6

Q ss_pred             HHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHhcC----CchhHHHH-H
Q 013312          269 FLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISW----SAWVPYAT-T  343 (445)
Q Consensus       269 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~  343 (445)
                      ...+++| +|+|+.+.|++.+...++..++. +..|+++||+|||+.+..+.++..++.++.++..    +.+..+.. .
T Consensus        47 ~~p~~~~-~g~s~~~~g~~~s~~~~~~~~~~-~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (447)
T d1pw4a_          47 AMPYLVE-QGFSRGDLGFALSGISIAYGFSK-FIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLF  124 (447)
T ss_dssp             HHHHTTS-STTCSSCHHHHHHHHHHHHHHHH-HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHH
T ss_pred             HHHHHHH-hCcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHH
Confidence            3345666 79999999999999999999998 8889999999999999999999988888777653    44555554 7


Q ss_pred             HHHhhhhhhhhhHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013312          344 AFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALF  398 (445)
Q Consensus       344 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~  398 (445)
                      +.|++.+...+....++.|.+|+++|++++|+.+....+|..++|.+.+.+.+..
T Consensus       125 ~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~  179 (447)
T d1pw4a_         125 LCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF  179 (447)
T ss_dssp             HHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT
T ss_pred             HHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhh
Confidence            7788899999999999999999999999999999999999999999998888765

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.43  E-value=6.2e-13  Score=122.15  Aligned_cols=149  Identities=13%  Similarity=0.083  Sum_probs=130.8

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHhhhhccccccccCchhHhHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHhhhccch
Q 013312           44 DECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEG  123 (445)
Q Consensus        44 ~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g  123 (445)
                      .+.+.+....+...+...++..++..+.+++.||+|||+.+..+..+.+++.+...+.++   .+.+++..++.|+ +.+
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~g~-~~~  327 (417)
T d1pv7a_         252 ATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATS---ALEVVILKTLHMF-EVP  327 (417)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCC---HHHHHHHHHHHHH-HHH
T ss_pred             cccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccc---cchhhHHHHHHHH-HHH
Confidence            455677778899999999999999999999999999999999999999999999999999   8999999999999 888


Q ss_pred             hHHHHHHHHHhcCCCccchhhHHHHH-HHHHhhhhhhhhhhhhh----hchhhHHHHHHHHHHHHHHHHHHhccCCCC
Q 013312          124 SINCLALAYVADNISERQRASAFGIL-LGVLSASFVCGTLAARF----LSTTSAFQAATIVSMLAAAYMRVFLKDDVP  196 (445)
Q Consensus       124 ~~~~~~~~~i~~~~~~~~r~~~~~~~-~~~~~~g~~~g~~l~~~----~~w~~~f~~~~~~~~i~~~~~~~~~~e~~~  196 (445)
                      ...+...+++.|.+|+++|+++.+.. +....+|..++|.+++.    .|++..|++.+++.++..++..+.++++.+
T Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~  405 (417)
T d1pv7a_         328 FLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGP  405 (417)
T ss_dssp             HHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred             HHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Confidence            88899999999999999999999985 45667888888888776    488999999998888777777777776543