Citrus Sinensis ID: 013322


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-----
MCQITKLYHNFLYFLHRLQNIKRSFFAFLFCLPTSLLALLLILLLVYNGSFVFYIDIPSFPARISPVPAKFPPEKVAGESLPKFASSALYVLREENPPVIPKTHLPPYQKQNFSLVPMNSYLASRPKKARNRRVKFKIPRLGAKSRRFSAIVKGFFQNSSCKIKFFMTWISSLESFGGREFLALESLYKSHPNACLVMVSNSLDSRKGRLIFKQFLDNGFKVIAVKPDYDYIFKNTYAQEWFNRLKKGNVDPGLISLGQNLSNLLRLTLLYKFGGIYLDTDVIVLKNLSKLRNTIGAQTVDSETKNWTRLNNAVLIFDKNHPLLHKFIQEFTLTFDGNKWGHNGPYLVSRVVARVNGRPGFNFTVLPPSAFYPVDWRRVRSFFLGPRSEQHSKLLHKKLELINRQSFTVHLWNRQSKLLKVEDGSIVNRLILASCIFCNSSLSTL
ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccEEEEEEccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccEEEEEEEccccccccHHHHHHHHHHHHHccccEEEEEEccccccccHHHHHHHHHcccccEEEcccHHHHHHccHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHcccEEEEccEEEEcccHHHHHHcccccccccccccccccccEEccccccHHHHHHHHHHHHHccccccccccccccEEEHHHHcccccccEEEcccccccccccccccccccccccHHHHHHHHHHHHHccccEEEEEEEcccccccccccccHHHHHHHHcccccHHHHccc
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccEEEEEEcccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccEEEEEEEEcccHHHccHHHHHHHHHHHHHccccEEEEEEcccccccccccHHHHHHHcccEEEEcccHHHHHccccHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHccEEEcccEEEEEcccccccEEEEEcccccccccEEEccEEEEcccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHcccccccEEEccccccccccHHHHHHHcccccccccHHHHHHHHHHHHcccEEEEEEEccccccccccccHHHHHHHHHccEEccccccc
MCQITKLYHNFLYFLHRLQNIKRSFFAFLFCLPTSLLALLLILLLVYNgsfvfyidipsfparispvpakfppekvageslpkfASSALYVlreenppvipkthlppyqkqnfslvpmnsylasrpkkarnrrvkfkiprlgaksRRFSAIVKGffqnssckIKFFMTWISSLESFGGREFLALESLYKSHPNACLVMVSNSLDSRKGRLIFKQFLDNGFkviavkpdydyiFKNTYAQEWFNRlkkgnvdpglislGQNLSNLLRLTLLYKFGGIYLDTDVIVLKNLSKLRNTIGAQTVDSETKNWTRLNNAVLifdknhpllHKFIQEFTltfdgnkwghngpYLVSRVVARVngrpgfnftvlppsafypvdwrrvrsfflgprseqHSKLLHKKLELINRQSFTVHLWNRQskllkvedgsiVNRLILASCIFCNSSLSTL
MCQITKLYHNFLYFLHRLQNIKRSFFAFLFCLPTSLLALLLILLLVYNGSFVFYIDIPSFPARISPVPAKFPPEKVAGESLPKFASSALYVLREENPPVIPKTHLPPYQKQNFSLVPMNsylasrpkkarnrrvkfkiprlgaksrrfSAIVKGFFQNSSCKIKFFMTWISSLESFGGREFLALESLYKSHPNACLVMVSNSLDSRKGRLIFKQFLDNGFKVIAVKPDYDYIFKNTYAQEWFNRLKKGNVDPGLISLGQNLSNLLRLTLLYKFGGIYLDTDVIVLKNLSKLRNTigaqtvdsetknwTRLNNAVLIFDKNHPLLHKFIQEFTLTFDGNKWGHNGPYLVSRVVARVNGRpgfnftvlppsafypvDWRRVRSFFLGPRSEQHSKLLHKKLELINRQSFTVHLWNRQSKLLKVEDGSIVNRLILASCIfcnsslstl
MCQITKLYHNFLYFLHRLQNIKRSFFAFlfclptsllalllilllVYNGSFVFYIDIPSFPARISPVPAKFPPEKVAGESLPKFASSALYVLREENPPVIPKTHLPPYQKQNFSLVPMNSYLASRPKKARNRRVKFKIPRLGAKSRRFSAIVKGFFQNSSCKIKFFMTWISSLESFGGREFLALESLYKSHPNACLVMVSNSLDSRKGRLIFKQFLDNGFKVIAVKPDYDYIFKNTYAQEWFNRLKKGNVDPGLIslgqnlsnllrltllYKFGGIYLDTDVIVLKNLSKLRNTIGAQTVDSETKNWTRLNNAVLIFDKNHPLLHKFIQEFTLTFDGNKWGHNGPYLVSRVVARVNGRPGFNFTVLPPSAFYPVDWRRVRSFFLGPRSEQHSKLLHKKLELINRQSFTVHLWNRQSKLLKVEDGSIVNRLILASCIFCNSSLSTL
**QITKLYHNFLYFLHRLQNIKRSFFAFLFCLPTSLLALLLILLLVYNGSFVFYIDIPSFPARISP********************SALYVLR*********************LV*****************VKFKIPRLGAKSRRFSAIVKGFFQNSSCKIKFFMTWISSLESFGGREFLALESLYKSHPNACLVMVSNSLDSRKGRLIFKQFLDNGFKVIAVKPDYDYIFKNTYAQEWFNRLKKGNVDPGLISLGQNLSNLLRLTLLYKFGGIYLDTDVIVLKNLSKLRNTIGAQTVDSETKNWTRLNNAVLIFDKNHPLLHKFIQEFTLTFDGNKWGHNGPYLVSRVVARVNGRPGFNFTVLPPSAFYPVDWRRVRSFFLGPRSEQHSKLLHKKLELINRQSFTVHLWNRQSKLLKVEDGSIVNRLILASCIFCN******
**QITKLYHNFLYFLHRLQNIKRSFFAFLFCLPTSLLALLLILLLVYNGSFVFYIDIPSF***************************************I*****************************************************GFFQNSSCKIKFFMTWISSLESFGGREFLALESLYKSHPNACLVMVSNSLDSRKGRLIFKQFLDNGFKVIAVKPDYDYIFKNTYAQEWFNRLKKGNVDPGLISLGQNLSNLLRLTLLYKFGGIYLDTDVIVLKNLSKLRNTIGAQTVDSETKNWTRLNNAVLIFDKNHPLLHKFIQEFTLTFDGNKWGHNGPYLVSRVVARVNGRPGFNFTVLPPSAFYPVDWRRVRSFFLGPRSEQHSKLLHKKLELINRQSFTVHLWNRQSKLLKVEDGSIVNRLILASCIFCNSSLST*
MCQITKLYHNFLYFLHRLQNIKRSFFAFLFCLPTSLLALLLILLLVYNGSFVFYIDIPSFPARISPVPAKFPPEKVAGESLPKFASSALYVLREENPPVIPKTHLPPYQKQNFSLVPMNSYLASRPKKARNRRVKFKIPRLGAKSRRFSAIVKGFFQNSSCKIKFFMTWISSLESFGGREFLALESLYKSHPNACLVMVSNSLDSRKGRLIFKQFLDNGFKVIAVKPDYDYIFKNTYAQEWFNRLKKGNVDPGLISLGQNLSNLLRLTLLYKFGGIYLDTDVIVLKNLSKLRNTIGAQTVDSETKNWTRLNNAVLIFDKNHPLLHKFIQEFTLTFDGNKWGHNGPYLVSRVVARVNGRPGFNFTVLPPSAFYPVDWRRVRSFFLGPRSEQHSKLLHKKLELINRQSFTVHLWNRQSKLLKVEDGSIVNRLILASCIFCNSSLSTL
MCQITKLYHNFLYFLHRLQNIKRSFFAFLFCLPTSLLALLLILLLVYNGSFVFYIDIPSF***********************FASSALYVLREENPPVIPKTHLPPYQ***********************RVKFKIPRLGAKSRRFSAIVKGFFQNSSCKIKFFMTWISSLESFGGREFLALESLYKSHPNACLVMVSNSLDSRKGRLIFKQFLDNGFKVIAVKPDYDYIFKNTYAQEWFNRLKKGNVDPGLISLGQNLSNLLRLTLLYKFGGIYLDTDVIVLKNLSKLRNTIGAQTVDSETKNWTRLNNAVLIFDKNHPLLHKFIQEFTLTFDGNKWGHNGPYLVSRVVARVNGRPGFNFTVLPPSAFYPVDWRRVRSFFLGPRSEQHSKLLHKKLELINRQSFTVHLWNRQSKLLKVEDGSIVNRLILASCIFCNSS****
iiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MCQITKLYHNFLYFLHRLQNIKRSFFAFLFCLPTSLLALLLILLLVYNGSFVFYIDIPSFPARISPVPAKFPPEKVAGESLPKFASSALYVLREENPPVIPKTHLPPYQKQNFSLVPMNSYLASRPKKARNRRVKFKIPRLGAKSRRFSAIVKGFFQNSSCKIKFFMTWISSLESFGGREFLALESLYKSHPNACLVMVSNSLDSRKGRLIFKQFLDNGFKVIAVKPDYDYIFKNTYAQEWFNRLKKGNVDPGLISLGQNLSNLLRLTLLYKFGGIYLDTDVIVLKNLSKLRNTIGAQTVDSETKNWTRLNNAVLIFDKNHPLLHKFIQEFTLTFDGNKWGHNGPYLVSRVVARVNGRPGFNFTVLPPSAFYPVDWRRVRSFFLGPRSEQHSKLLHKKLELINRQSFTVHLWNRQSKLLKVEDGSIVNRLILASCIFCNSSLSTL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query445 2.2.26 [Sep-21-2011]
P0C8Q4644 Uncharacterized protein A no no 0.624 0.431 0.332 1e-34
Q9JI93360 Lactosylceramide 4-alpha- yes no 0.503 0.622 0.316 2e-26
Q67BJ4359 Lactosylceramide 4-alpha- yes no 0.503 0.623 0.308 1e-25
Q9NPC4353 Lactosylceramide 4-alpha- yes no 0.516 0.651 0.305 2e-25
Q9N291353 Lactosylceramide 4-alpha- yes no 0.516 0.651 0.305 2e-25
Q9N290327 Lactosylceramide 4-alpha- N/A no 0.514 0.700 0.302 4e-25
Q9N289218 Lactosylceramide 4-alpha- N/A no 0.415 0.848 0.331 9e-25
Q9UNA3340 Alpha-1,4-N-acetylglucosa no no 0.375 0.491 0.236 3e-11
>sp|P0C8Q4|Y4990_ARATH Uncharacterized protein At4g19900 OS=Arabidopsis thaliana GN=At4g19900 PE=2 SV=1 Back     alignment and function desciption
 Score =  147 bits (372), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 102/307 (33%), Positives = 157/307 (51%), Gaps = 29/307 (9%)

Query: 148 FSAIVKGFFQNSSCKIKFFMTWISSLESFGGREFLALESLYKSHPNACLVMVSNSLDSRK 207
           FS  +  FF+   C ++ FM W S    F  R    LESL   H +AC+V+ S +++   
Sbjct: 355 FSDFMDSFFRKEKCSMRVFMVWNSPGWMFSVRHQRGLESLLSQHRDACVVVFSETVE--- 411

Query: 208 GRLIF--KQFLDNGFKVIAVKPDYDYIFKNT----YAQEWFNRLKKGNVDPGLISLGQNL 261
             L F    F+ + +KV    P+ D + ++T    +A  WF+  +K    P       + 
Sbjct: 412 --LDFFRNSFVKDSYKVAVAMPNLDELLQDTPTHVFASVWFD-WRKTKFYP------THY 462

Query: 262 SNLLRLTLLYKFGGIYLDTDVIVLKNLSKLRNTIGAQT-VDSETKNWTRLNNAVLIFDKN 320
           S L+RL  LYK+GG+YLD+DVIVL +LS LRNTIG +  V  E+     LN AV+ F+K 
Sbjct: 463 SELVRLAALYKYGGVYLDSDVIVLGSLSSLRNTIGMEDQVAGES-----LNGAVMSFEKK 517

Query: 321 HPLLHKFIQEFTLTFDGNKWGHNGPYLVSRVVAR-VNGR----PGFNFTVLPPSAFYPVD 375
            P L + + E+ LT+D      NG  L++RV  R +NG+          + P S F+P++
Sbjct: 518 SPFLLECLNEYYLTYDDKCLRCNGADLLTRVAKRFLNGKNRRMNQQELNIRPSSVFFPIN 577

Query: 376 WRRVRSFFLGPRSEQHSKLLHKKLELINRQSFTVHLWNRQSKLLKVEDGSIVNRLILASC 435
            +++ ++F  P  E       +  + I  +S T H WN  +  L  E  S+V + +  SC
Sbjct: 578 SQQITNYFAYPAIEDERSQQDESFKKILNESLTFHFWNSVTSSLIPEPESLVAKFLDHSC 637

Query: 436 IFCNSSL 442
           I C+  L
Sbjct: 638 IRCSDVL 644





Arabidopsis thaliana (taxid: 3702)
>sp|Q9JI93|A4GAT_RAT Lactosylceramide 4-alpha-galactosyltransferase OS=Rattus norvegicus GN=A4galt PE=1 SV=1 Back     alignment and function description
>sp|Q67BJ4|A4GAT_MOUSE Lactosylceramide 4-alpha-galactosyltransferase OS=Mus musculus GN=A4galt PE=2 SV=1 Back     alignment and function description
>sp|Q9NPC4|A4GAT_HUMAN Lactosylceramide 4-alpha-galactosyltransferase OS=Homo sapiens GN=A4GALT PE=2 SV=1 Back     alignment and function description
>sp|Q9N291|A4GAT_PANTR Lactosylceramide 4-alpha-galactosyltransferase OS=Pan troglodytes GN=A4GALT PE=3 SV=1 Back     alignment and function description
>sp|Q9N290|A4GAT_GORGO Lactosylceramide 4-alpha-galactosyltransferase (Fragment) OS=Gorilla gorilla gorilla GN=A4GALT PE=3 SV=1 Back     alignment and function description
>sp|Q9N289|A4GAT_PONPY Lactosylceramide 4-alpha-galactosyltransferase (Fragment) OS=Pongo pygmaeus GN=A4GALT PE=3 SV=1 Back     alignment and function description
>sp|Q9UNA3|A4GCT_HUMAN Alpha-1,4-N-acetylglucosaminyltransferase OS=Homo sapiens GN=A4GNT PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query445
255555985364 lactosylceramide 4-alpha-galactosyltrans 0.793 0.969 0.679 1e-136
224113967308 predicted protein [Populus trichocarpa] 0.674 0.974 0.713 1e-128
359497312451 PREDICTED: uncharacterized protein At4g1 0.928 0.915 0.589 1e-128
224078926308 predicted protein [Populus trichocarpa] 0.683 0.987 0.677 1e-123
356546655421 PREDICTED: uncharacterized protein At4g1 0.896 0.947 0.562 1e-117
357446543439 Lactosylceramide 4-alpha-galactosyltrans 0.914 0.927 0.549 1e-113
297840457436 alpha 1,4-glycosyltransferase family pro 0.932 0.951 0.535 1e-106
225440658416 PREDICTED: uncharacterized protein At4g1 0.723 0.774 0.563 1e-103
297740224495 unnamed protein product [Vitis vinifera] 0.723 0.650 0.563 1e-103
15219856435 alpha 1,4-glycosyltransferase-like prote 0.930 0.951 0.528 1e-103
>gi|255555985|ref|XP_002519027.1| lactosylceramide 4-alpha-galactosyltransferase, putative [Ricinus communis] gi|223541690|gb|EEF43238.1| lactosylceramide 4-alpha-galactosyltransferase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  491 bits (1265), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 240/353 (67%), Positives = 288/353 (81%)

Query: 89  LYVLREENPPVIPKTHLPPYQKQNFSLVPMNSYLASRPKKARNRRVKFKIPRLGAKSRRF 148
           +Y ++EENPPVI KTHLP   K   S++P+N  L SRPKK    R+  K+ RLG  S++F
Sbjct: 1   MYAVKEENPPVILKTHLPLLPKSAISMMPINYSLVSRPKKVHRHRILNKVLRLGDTSKQF 60

Query: 149 SAIVKGFFQNSSCKIKFFMTWISSLESFGGREFLALESLYKSHPNACLVMVSNSLDSRKG 208
           S  +K F  +S CK++FFMTWISSLESFG RE LA+ESL+KS+PNACLV+VS+S+DS +G
Sbjct: 61  STRIKAFLGSSVCKVRFFMTWISSLESFGDRELLAIESLFKSNPNACLVIVSSSMDSERG 120

Query: 209 RLIFKQFLDNGFKVIAVKPDYDYIFKNTYAQEWFNRLKKGNVDPGLISLGQNLSNLLRLT 268
             + +  LD GFKV ++KPD++Y+FKNTYA+ WF+ LKKGNVDPG +SLGQNLSNLLRL 
Sbjct: 121 SGLLRPLLDKGFKVASIKPDFNYLFKNTYAESWFSELKKGNVDPGEVSLGQNLSNLLRLA 180

Query: 269 LLYKFGGIYLDTDVIVLKNLSKLRNTIGAQTVDSETKNWTRLNNAVLIFDKNHPLLHKFI 328
           LLYKFGG YLDTDVIVLK+  KLRN IGAQT+D ET NW+RLNNAVLIFDK HPLL KFI
Sbjct: 181 LLYKFGGTYLDTDVIVLKSFGKLRNIIGAQTIDLETGNWSRLNNAVLIFDKKHPLLFKFI 240

Query: 329 QEFTLTFDGNKWGHNGPYLVSRVVARVNGRPGFNFTVLPPSAFYPVDWRRVRSFFLGPRS 388
           QEF LTF+GNKWGHNGPYLVSRVV+RV+GRPGFNFTVLPPSAFYPV+W R+ S F GPR 
Sbjct: 241 QEFALTFNGNKWGHNGPYLVSRVVSRVSGRPGFNFTVLPPSAFYPVNWSRIGSIFRGPRD 300

Query: 389 EQHSKLLHKKLELINRQSFTVHLWNRQSKLLKVEDGSIVNRLILASCIFCNSS 441
           E HSK L +KLE I  +S  VHLWN+QS+ +KVE+GSI+N +IL SCIFCN+S
Sbjct: 301 ELHSKWLQRKLEQIKGESLAVHLWNKQSRQIKVENGSIINHIILDSCIFCNAS 353




Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224113967|ref|XP_002316629.1| predicted protein [Populus trichocarpa] gi|222859694|gb|EEE97241.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359497312|ref|XP_003635482.1| PREDICTED: uncharacterized protein At4g19900-like [Vitis vinifera] gi|296088928|emb|CBI38494.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224078926|ref|XP_002305683.1| predicted protein [Populus trichocarpa] gi|222848647|gb|EEE86194.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356546655|ref|XP_003541739.1| PREDICTED: uncharacterized protein At4g19900-like [Glycine max] Back     alignment and taxonomy information
>gi|357446543|ref|XP_003593549.1| Lactosylceramide 4-alpha-galactosyltransferase [Medicago truncatula] gi|355482597|gb|AES63800.1| Lactosylceramide 4-alpha-galactosyltransferase [Medicago truncatula] Back     alignment and taxonomy information
>gi|297840457|ref|XP_002888110.1| alpha 1,4-glycosyltransferase family protein [Arabidopsis lyrata subsp. lyrata] gi|297333951|gb|EFH64369.1| alpha 1,4-glycosyltransferase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|225440658|ref|XP_002274455.1| PREDICTED: uncharacterized protein At4g19900-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297740224|emb|CBI30406.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|15219856|ref|NP_176300.1| alpha 1,4-glycosyltransferase-like protein [Arabidopsis thaliana] gi|12323337|gb|AAG51645.1|AC018908_11 hypothetical protein; 81821-83128 [Arabidopsis thaliana] gi|332195650|gb|AEE33771.1| alpha 1,4-glycosyltransferase-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query445
TAIR|locus:2206006435 AT1G61050 [Arabidopsis thalian 0.925 0.947 0.474 6.6e-97
TAIR|locus:2095264411 AT3G09020 [Arabidopsis thalian 0.786 0.851 0.432 6.8e-79
TAIR|locus:2042897405 AT2G38150 [Arabidopsis thalian 0.705 0.775 0.44 2.7e-77
TAIR|locus:2150104407 AT5G01250 [Arabidopsis thalian 0.649 0.710 0.486 3.1e-76
TAIR|locus:4010713690380 AT2G38152 [Arabidopsis thalian 0.622 0.728 0.496 1.1e-73
RGD|621583360 A4galt "alpha 1,4-galactosyltr 0.514 0.636 0.298 3.9e-21
UNIPROTKB|G3MZ03368 LOC618369 "Uncharacterized pro 0.494 0.597 0.282 5.6e-21
UNIPROTKB|Q9N290327 A4GALT "Lactosylceramide 4-alp 0.514 0.700 0.283 1.2e-20
UNIPROTKB|Q9NPC4353 A4GALT "Lactosylceramide 4-alp 0.514 0.648 0.287 1.5e-20
UNIPROTKB|Q9N291353 A4GALT "Lactosylceramide 4-alp 0.514 0.648 0.287 2.4e-20
TAIR|locus:2206006 AT1G61050 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 963 (344.1 bits), Expect = 6.6e-97, P = 6.6e-97
 Identities = 204/430 (47%), Positives = 263/430 (61%)

Query:    18 LQNIKRSFFAFXXXXXXXXXXXXXXXXXVYNGSFVFYID-IPSFPAR--ISPVPAKFPPE 74
             +Q +KR   +F                 +YN   VF +  +P+ P +  +SP   +    
Sbjct:    13 VQRLKRLIVSFVFCLPMSLLGLLLMLLLIYNSFSVFSLHLVPNQPIQSTLSPTHLQILHH 72

Query:    75 KVAGESLPKFASSALYVLREENPPVIPKTHLPPYQKQNFSLVPMNSYLASRPKKARNRRV 134
             + +  S     SS L V++E        T L   QKQN S   +     +R  K      
Sbjct:    73 QTSTSSSVS-DSSLLLVVKE--------TSLGFIQKQNVSSTRIEK--KTRRFKRSTELT 121

Query:   135 KFKIPRLGAKSR-RFSAIVKGFFQNSSCKIKFFMTWISSLESFGGREFLALESLYKSHPN 193
                  RL  KSR RF   VK     SSC+  FFMTWISS+ESFG RE   +ESL+K HPN
Sbjct:   122 PAITQRLQVKSRQRFQTRVKSLLSKSSCESLFFMTWISSIESFGDRERFTIESLFKFHPN 181

Query:   194 ACLVMVSNSLDSRKGRLIFKQFLDNGFKVIAVKPDYDYIFKNTYAQEWFNRLKKGNVDPG 253
              CL++VSNS D  +G LI K F D G KV+ +KPD+ YIFK+T A++WF RLKKG + PG
Sbjct:   182 GCLILVSNSFDCDRGTLILKPFTDKGLKVLPIKPDFAYIFKDTSAEKWFERLKKGTLSPG 241

Query:   254 LIXXXXXXXXXXXXXXXYKFGGIYLDTDVIVLKNLSKLRNTIGAQTVDSETKNWTRLNNA 313
             +I               YK+GGIYLDTDVI+LK+LS L N IGAQTVD  TK W+RLNNA
Sbjct:   242 VIPLEQNLSNLLRLVLLYKYGGIYLDTDVIILKSLSNLHNVIGAQTVDPVTKKWSRLNNA 301

Query:   314 VLIFDKNHPLLHKFIQEFTLTFDGNKWGHNGPYLVSRVVARV--NGRPGFNFTVLPPSAF 371
             VLIFDKNHPLL +FI EF+ TF+GNKWGHNGPYLVSRV+ R+  +      F+VLPPSAF
Sbjct:   302 VLIFDKNHPLLKRFIDEFSRTFNGNKWGHNGPYLVSRVITRIKISSSSDLGFSVLPPSAF 361

Query:   372 YPVDWRRVRSFFLGPRSEQHSKLLHKKLELINRQSFTVHLWNRQSKLLKVEDGSIVNRLI 431
             YPVDW R++ F+  P +E  +  L K+L  + + +F VHLWNR+SK L++E+GSI+++L+
Sbjct:   362 YPVDWTRIKGFYRAPTNESDA-WLRKRLTHLRKNTFAVHLWNRESKKLRIEEGSIIHQLM 420

Query:   432 LASCIFCNSS 441
               SCIFCNSS
Sbjct:   421 SHSCIFCNSS 430




GO:0005794 "Golgi apparatus" evidence=ISM
GO:0005795 "Golgi stack" evidence=IEA
GO:0008378 "galactosyltransferase activity" evidence=IEA
GO:0016740 "transferase activity" evidence=ISS
GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISS
TAIR|locus:2095264 AT3G09020 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2042897 AT2G38150 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2150104 AT5G01250 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:4010713690 AT2G38152 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
RGD|621583 A4galt "alpha 1,4-galactosyltransferase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|G3MZ03 LOC618369 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q9N290 A4GALT "Lactosylceramide 4-alpha-galactosyltransferase" [Gorilla gorilla gorilla (taxid:9595)] Back     alignment and assigned GO terms
UNIPROTKB|Q9NPC4 A4GALT "Lactosylceramide 4-alpha-galactosyltransferase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q9N291 A4GALT "Lactosylceramide 4-alpha-galactosyltransferase" [Pan troglodytes (taxid:9598)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.4.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
GSVIVG00010277001
SubName- Full=Chromosome undetermined scaffold_252, whole genome shotgun sequence; (465 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00029535001
SubName- Full=Chromosome chr13 scaffold_48, whole genome shotgun sequence; (541 aa)
       0.899
GSVIVG00003707001
SubName- Full=Chromosome chr13 scaffold_149, whole genome shotgun sequence; (565 aa)
       0.899
GSVIVG00034182001
RecName- Full=Beta-galactosidase; EC=3.2.1.23; (641 aa)
       0.800
GSVIVG00030925001
SubName- Full=Chromosome undetermined scaffold_53, whole genome shotgun sequence; (133 aa)
       0.800

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query445
pfam04572135 pfam04572, Gb3_synth, Alpha 1,4-glycosyltransferas 1e-35
pfam0448893 pfam04488, Gly_transf_sug, Glycosyltransferase sug 8e-17
>gnl|CDD|146960 pfam04572, Gb3_synth, Alpha 1,4-glycosyltransferase conserved region Back     alignment and domain information
 Score =  128 bits (323), Expect = 1e-35
 Identities = 54/139 (38%), Positives = 76/139 (54%), Gaps = 19/139 (13%)

Query: 315 LIFDKNHPLLHKFIQEFTLTFDGNKWGHNGPYLVSRVVARVNGRPGF---------NFTV 365
           + F+ +HPL    +++F   F+GNKWGHNGP LV+RV+ +      F          FTV
Sbjct: 1   MNFEPHHPLAEMCLRDFAANFNGNKWGHNGPGLVTRVLRKWCNTGDFAGMTRLRCGGFTV 60

Query: 366 LPPSAFYPVDWRRVRSFFLGPRSEQHSKLLHKKLELINRQSFTVHLWNRQSKLLKVEDGS 425
           LPP AFYP+ W + + FF  PR E+    +        ++S+ VHLWN+ SK LKVE+GS
Sbjct: 61  LPPDAFYPIPWPQWKKFFEEPRLEETMNWV--------KESYAVHLWNKASKGLKVEEGS 112

Query: 426 IVNRLILAS--CIFCNSSL 442
            V    LA   C    ++ 
Sbjct: 113 RVAYGTLAEQHCPRVYNAC 131


The glycosphingolipids (GSL) form part of eukaryotic cell membranes. They consist of a hydrophilic carbohydrate moiety linked to a hydrophobic ceramide tail embedded within the lipid bilayer of the membrane. Lactosylceramide, Gal1,4Glc1Cer (LacCer), is the common synthetic precursor to the majority of GSL found in vertebrates. Alpha 1.4-glycosyltransferases utilise UDP donors and transfer the sugar to a beta-linked acceptor. This region appears to be confined to higher eukaryotes. No function has been yet assigned to this region. Length = 135

>gnl|CDD|218109 pfam04488, Gly_transf_sug, Glycosyltransferase sugar-binding region containing DXD motif Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 445
KOG1928409 consensus Alpha-1,4-N-acetylglucosaminyltransferas 100.0
PF04572135 Gb3_synth: Alpha 1,4-glycosyltransferase conserved 99.95
PF04488103 Gly_transf_sug: Glycosyltransferase sugar-binding 99.78
PF05704276 Caps_synth: Capsular polysaccharide synthesis prot 99.76
COG3774347 OCH1 Mannosyltransferase OCH1 and related enzymes 99.66
PF12919 514 TcdA_TcdB: TcdA/TcdB catalytic glycosyltransferase 97.49
cd04194248 GT8_A4GalT_like A4GalT_like proteins catalyze the 95.0
cd02537240 GT8_Glycogenin Glycogenin belongs the GT 8 family 94.98
PRK15171334 lipopolysaccharide 1,3-galactosyltransferase; Prov 94.97
PRK15382326 non-LEE encoded effector protein NleB; Provisional 92.7
PRK15383335 type III secretion system protein; Provisional 92.48
PRK15384336 type III secretion system protein; Provisional 91.97
cd06914278 GT8_GNT1 GNT1 is a fungal enzyme that belongs to t 91.01
cd06429257 GT8_like_1 GT8_like_1 represents a subfamily of GT 88.94
cd06432248 GT8_HUGT1_C_like The C-terminal domain of HUGT1-li 85.63
PF01501250 Glyco_transf_8: Glycosyl transferase family 8; Int 83.66
cd00505246 Glyco_transf_8 Members of glycosyltransferase fami 82.43
>KOG1928 consensus Alpha-1,4-N-acetylglucosaminyltransferase [Carbohydrate transport and metabolism] Back     alignment and domain information
Probab=100.00  E-value=5.6e-73  Score=568.00  Aligned_cols=398  Identities=43%  Similarity=0.724  Sum_probs=341.5

Q ss_pred             HHHHHHhHHhHhhhhhccchHHHHHHHHHHHHhccEEEEEEEcCCCCCCCCCCCCCCCCCcccCCCccccccchhhhhhc
Q 013322           15 LHRLQNIKRSFFAFLFCLPTSLLALLLILLLVYNGSFVFYIDIPSFPARISPVPAKFPPEKVAGESLPKFASSALYVLRE   94 (445)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (445)
                      .+++++++|.+.|..+ |+|++...++.+.+++ .+-++.+++-          ..++|.+++....     ++++-.++
T Consensus         9 ~~~~~~~~rl~~s~~~-l~~~~~~~~~~~~~~~-~~l~~~~~v~----------~~~~~~~~~~~i~-----~~~~~~~~   71 (409)
T KOG1928|consen    9 VLLVLDLRRLNRSGSS-LFTAFAPMLLDLDSVT-TLLVSNLSVV----------RDFSPPFVLIEIL-----SVVPSLPV   71 (409)
T ss_pred             hhhhHhHHHHhhcccc-cchhhhhhhhhhceee-EEEEccceee----------eccCCcceEEEec-----cccccccc
Confidence            4678999999999999 9999999999999999 7777766653          2333444433322     33222222


Q ss_pred             cCCCCCCCCCCCCCccccc-cccCCCcccccchhhhhhcccceecccCCccchhHhHHHhhhccCCCcccceeeeeccCC
Q 013322           95 ENPPVIPKTHLPPYQKQNF-SLVPMNSYLASRPKKARNRRVKFKIPRLGAKSRRFSAIVKGFFQNSSCKIKFFMTWISSL  173 (445)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ff~~~~c~~~~~m~W~s~~  173 (445)
                      +|.      -..+++...+ +...+.....++     +++.+++++++...++.|+.|+..||..+ |+.+|||+|+|+.
T Consensus        72 ~~e------~~~~~~~~~~~~~~q~~~~~~e~-----~~l~e~~~~~s~~~~~sf~~~~~~~~~~~-c~~~~fm~w~S~~  139 (409)
T KOG1928|consen   72 SNE------FELLFSVGRSLSLKQKTTVNGEK-----IELQELENLSSELKSPSFQSRVNSFFRKE-CSVRFFMTWISPA  139 (409)
T ss_pred             cch------hhhhcchhhhhhheeeeeecccc-----chhhheeeccccccCcccCCCcchhhccC-CceeEEEEecccc
Confidence            221      2223332222 332222222222     45778899999999999999999999776 9999999999999


Q ss_pred             CCchhHHHHHHHHHHHHCCCCEEEEEeCCCCCCcchhhHHhhhhcCcceEEeCCChhhhhhcCcHHHHHHHhhcCCcCCC
Q 013322          174 ESFGGREFLALESLYKSHPNACLVMVSNSLDSRKGRLIFKQFLDNGFKVIAVKPDYDYIFKNTYAQEWFNRLKKGNVDPG  253 (445)
Q Consensus       174 ~~l~~Rq~caIESaar~nP~~~V~ils~t~~~~~g~~~l~~ll~~~~nv~v~~pdl~~lf~~TPl~~W~~~~~~g~~~~~  253 (445)
                      +.++.||+|||||||++||++||+|+|+++++..|..++++|+++++++..+.||+..++++||.+.|++++++|+.+++
T Consensus       140 ~~f~~r~~~sIESa~k~hP~~cv~vls~t~ds~~~~s~~kp~~~~~lsv~~v~~~lp~llk~t~~e~~l~~~k~g~~~~~  219 (409)
T KOG1928|consen  140 ESFGVREMCSIESAFKTHPEGCVVVLSKTMDSPNGYSILKPFLDSGLSVIAVTPDLPFLLKDTPGETWLERWKDGRLDPG  219 (409)
T ss_pred             cCCChhhhhhhHHHHhhCCCceEEEEEccccCCCCccccccHhHhhhhhcccccCchhhHhhCccccHHHHHHhcccCCC
Confidence            99999999999999999999999999999998889899999999999999999999999999999999999999999999


Q ss_pred             CccchhhhHhHHHHHHHHHcCcEEEeCCceecccchhhhhhhcccccccCCCCcccccceEEEecCCCHHHHHHHHHHHH
Q 013322          254 LISLGQNLSNLLRLTLLYKFGGIYLDTDVIVLKNLSKLRNTIGAQTVDSETKNWTRLNNAVLIFDKNHPLLHKFIQEFTL  333 (445)
Q Consensus       254 ~i~~~a~~SD~lR~~lLykyGGIYLD~Dvi~lkpld~l~n~ig~e~~~~~~~~~~~l~Navm~a~~~hpfl~~~L~~~~~  333 (445)
                      ++++.++.||+.|+++||||||||||||||++|++..+.|.+|..   +....|.++|||||+++++|||+.+||++|+.
T Consensus       220 ~~~l~~~lSdl~RLA~LyKYGGvYLDTDvIvLksl~~l~N~ig~~---~~~~~~~~lnnavl~F~k~Hpfl~~cl~eF~~  296 (409)
T KOG1928|consen  220 KIPLLQNLSDLSRLALLYKYGGVYLDTDVIVLKSLSNLRNVIGVD---PATQAWTRLNNAVLIFDKNHPFLLECLREFAL  296 (409)
T ss_pred             cccchhhHHHHHHHHHHHHhCCEEeeccEEEeccccccccccccc---chhhHHHhhcCceeecCCCCHHHHHHHHHHHH
Confidence            999989999999999999999999999999999999999999922   23356889999999999999999999999999


Q ss_pred             hcCCCCcCccCcHHHHHHHHHHhCCCCCceeeCCCCccccCCcchhhccccCCCcchhhhHHHHHhhhhcCceEEEEeec
Q 013322          334 TFDGNKWGHNGPYLVSRVVARVNGRPGFNFTVLPPSAFYPVDWRRVRSFFLGPRSEQHSKLLHKKLELINRQSFTVHLWN  413 (445)
Q Consensus       334 ~yd~~~w~~tGP~llTrvl~~~~~~~~~~i~VlP~~~FyPi~w~~~~~~F~~~~~~~~~~w~~~~l~~i~~~SyaIHlWn  413 (445)
                      +|||++||++||+++|||++++|+.++.+++|.|+.+|||++|.++..||..|..+-++.|..++..++.++||++|+||
T Consensus       297 tfNg~~WG~NGP~LvTRVakr~c~~~~~~~~i~~p~~f~~vn~~~i~~fy~iP~~ew~~~~~~~~~~~~~k~Sy~vHlWN  376 (409)
T KOG1928|consen  297 TYNGNIWGHNGPYLVTRVAKRWCNTKNYNLTILPPSAFYPVNWLEIQAFYAIPWTEWDRKFVDEETLKMLKNSYAVHLWN  376 (409)
T ss_pred             hccccccccCCcHHHHHHHHHHhCCCCccceecCccccCceeeeccccccccchhHhhhhhhHHHHHHHhccCeEEEeee
Confidence            99999999999999999999999998888999999999999999999999988887777777778888999999999999


Q ss_pred             CCcccCccCCCcHHHHHHHHhCCCCCCcCCC
Q 013322          414 RQSKLLKVEDGSIVNRLILASCIFCNSSLST  444 (445)
Q Consensus       414 k~~r~~~i~~gS~~~~L~~~~Cp~c~~~~~~  444 (445)
                      +.+++++++.||+++.|+++|||+|.+.+..
T Consensus       377 k~S~k~~ie~gS~~~~L~s~~Cp~~~~~s~~  407 (409)
T KOG1928|consen  377 KFSRKLKIEEGSAVAKLVSKHCPRCYSATGE  407 (409)
T ss_pred             ccccccccccchHHHHHHHhcCCcccchhhc
Confidence            9999999999999999999999999986543



>PF04572 Gb3_synth: Alpha 1,4-glycosyltransferase conserved region; InterPro: IPR007652 The glycosphingolipids (GSL) form part of eukaryotic cell membranes Back     alignment and domain information
>PF04488 Gly_transf_sug: Glycosyltransferase sugar-binding region containing DXD motif ; InterPro: IPR007577 This entry represents those sugar-binding regions of glycosyltransferases that contain a DXD motif Back     alignment and domain information
>PF05704 Caps_synth: Capsular polysaccharide synthesis protein; InterPro: IPR008441 This entry consists of several capsular polysaccharide proteins Back     alignment and domain information
>COG3774 OCH1 Mannosyltransferase OCH1 and related enzymes [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF12919 TcdA_TcdB: TcdA/TcdB catalytic glycosyltransferase domain; InterPro: IPR024770 Toxins A (TcdA) and B (TcdB) of Clostridium difficile belong to the family of clostridial glucosylating toxins Back     alignment and domain information
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface Back     alignment and domain information
>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen Back     alignment and domain information
>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional Back     alignment and domain information
>PRK15382 non-LEE encoded effector protein NleB; Provisional Back     alignment and domain information
>PRK15383 type III secretion system protein; Provisional Back     alignment and domain information
>PRK15384 type III secretion system protein; Provisional Back     alignment and domain information
>cd06914 GT8_GNT1 GNT1 is a fungal enzyme that belongs to the GT 8 family Back     alignment and domain information
>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function Back     alignment and domain information
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family Back     alignment and domain information
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases Back     alignment and domain information
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query445
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 44.5 bits (104), Expect = 7e-05
 Identities = 63/456 (13%), Positives = 132/456 (28%), Gaps = 144/456 (31%)

Query: 39  LLLILLLVYNGS----FVFYIDIPSFPARISPVPAKFPPEKVAGESLPKFASSALYVLRE 94
            L   LL         FV  +   ++          F    +  E       + +Y+ + 
Sbjct: 66  RLFWTLLSKQEEMVQKFVEEVLRINYK---------FLMSPIKTEQRQPSMMTRMYIEQR 116

Query: 95  E----NPPVIPKTHLP---PYQK-----------QNFSLVPMN----SYLASRPKKARNR 132
           +    +  V  K ++    PY K           +N  +  +     +++A       + 
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVAL--DVCLSY 174

Query: 133 RVKFKIP------RLGAKSRRFSAIVKGFFQNSSCKIKFFMTWISSLESFGGREFLALES 186
           +V+ K+        L         +++                 +S         L + S
Sbjct: 175 KVQCKMDFKIFWLNLK-NCNSPETVLE--MLQKLLYQ--IDPNWTSRSDHSSNIKLRIHS 229

Query: 187 LY---------KSHPNACLVMVSNSLDSRKGRLIFKQFLDNGFKVIAVKPDYDYIFKNTY 237
           +          K + N CL+++ N  +++     +  F +   K++            T 
Sbjct: 230 IQAELRRLLKSKPYEN-CLLVLLNVQNAK----AWNAF-NLSCKILLT----------TR 273

Query: 238 AQEWFNRLKKGNVDPGLISLGQNLSNLLR---LTLLYKFGGIYLDTDVIVLKNLSKLRNT 294
            ++  + L         ISL  +   L      +LL K    YLD           L   
Sbjct: 274 FKQVTDFLSAATTTH--ISLDHHSMTLTPDEVKSLLLK----YLDCRP------QDLP-- 319

Query: 295 IGAQTVDSETKNWTRLNNAVLIFDKNHPLLHKFI----QEFTLTFDGNKWGHNGPYLVSR 350
                   E                 +P     I    ++   T+D   W H     ++ 
Sbjct: 320 -------REVL-------------TTNPRRLSIIAESIRDGLATWDN--WKHVNCDKLTT 357

Query: 351 VVARVNGRPGFNFTVLPPSAFYPVDWRRV-RSFFLGPRSEQHSKLLHKKLELINRQSFTV 409
           ++         +  VL P+     ++R++     + P     + +    L L        
Sbjct: 358 IIES-------SLNVLEPA-----EYRKMFDRLSVFP---PSAHIPTILLSL-------- 394

Query: 410 HLWNRQSKLLKVEDGSIVNRLILASCIFCNSSLSTL 445
            +W     ++K +   +VN+L   S +      ST+
Sbjct: 395 -IWF---DVIKSDVMVVVNKLHKYSLVEKQPKESTI 426


Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query445
2vk9_A 551 Alpha-toxin; glycosyltransferase; 2.85A {Clostridi 98.68
2bvl_A 543 Toxin B; glycosyltransferase; HET: GLC UDP TBR; 2. 98.36
4dmv_A 556 Toxin A, TCDA; transferase; 1.50A {Clostridium dif 98.1
3tzt_A276 Glycosyl transferase family 8; structural genomics 91.5
3u2u_A263 Glycogenin-1, GN-1, GN1; structural genomics, stru 91.47
1g9r_A311 Glycosyl transferase; alpha-beta structure; HET: U 88.65
1ll2_A333 Glycogenin-1; protein-substrate complex, beta-alph 87.26
3jsz_A 525 LGT1, putative uncharacterized protein; glucosyltr 84.45
>2vk9_A Alpha-toxin; glycosyltransferase; 2.85A {Clostridium novyi} SCOP: c.68.1.22 Back     alignment and structure
Probab=98.68  E-value=7.2e-08  Score=101.54  Aligned_cols=40  Identities=5%  Similarity=0.101  Sum_probs=36.3

Q ss_pred             cccceeeeeccCCCCchhHHHHHHHHHHHHCCCCEEEEEeCC
Q 013322          161 CKIKFFMTWISSLESFGGREFLALESLYKSHPNACLVMVSNS  202 (445)
Q Consensus       161 c~~~~~m~W~s~~~~l~~Rq~caIESaar~nP~~~V~ils~t  202 (445)
                      -+..+-.||.+|.  .|..+..+|+||.+++||+++.+|.++
T Consensus        96 IPKiIHyiW~Gg~--~P~~~~~cI~sWkk~~PDYei~lW~D~  135 (551)
T 2vk9_A           96 ASKNLSFIWIGGP--ISDQSLEYYNMWKMFNKDYNIRLFYDK  135 (551)
T ss_dssp             CCSEEEEECCSSC--CCHHHHHHHHHHHHHCTTSEEEEEECT
T ss_pred             CCcceEEEEcCCC--CCHHHHHHHHHHHHHCcCCEEEEEecc
Confidence            4678889999997  799999999999999999999999875



>2bvl_A Toxin B; glycosyltransferase; HET: GLC UDP TBR; 2.2A {Clostridium difficile} SCOP: c.68.1.22 PDB: 2bvm_A* 2vkh_A* 2vkd_A* 2vl8_A* Back     alignment and structure
>4dmv_A Toxin A, TCDA; transferase; 1.50A {Clostridium difficile} PDB: 4dmw_A* 3ss1_A 3srz_A Back     alignment and structure
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0 Back     alignment and structure
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A Back     alignment and structure
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A* Back     alignment and structure
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A* Back     alignment and structure
>3jsz_A LGT1, putative uncharacterized protein; glucosyltransferase, legionnaire'S disease, legionella pneum transferase; HET: MSE UPG; 1.70A {Legionella pneumophila} PDB: 2wzg_A* 3jt1_A* 2wzf_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query445
d2bvla1 542 Toxin B {Clostridium difficile [TaxId: 1496]} 97.87
d2vk9a1 540 Alpha-toxin {Clostridium novyi [TaxId: 1542]} 97.04
d1ll2a_263 Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 95.93
d1ga8a_282 Galactosyltransferase LgtC {Neisseria meningitidis 94.73
>d2bvla1 c.68.1.22 (A:1-542) Toxin B {Clostridium difficile [TaxId: 1496]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Glycosylating toxin catalytic domain-like
domain: Toxin B
species: Clostridium difficile [TaxId: 1496]
Probab=97.87  E-value=2.2e-05  Score=80.60  Aligned_cols=40  Identities=8%  Similarity=0.186  Sum_probs=35.2

Q ss_pred             cccceeeeeccCCCCchhHHHHHHHHHHHHCCCCEEEEEeCC
Q 013322          161 CKIKFFMTWISSLESFGGREFLALESLYKSHPNACLVMVSNS  202 (445)
Q Consensus       161 c~~~~~m~W~s~~~~l~~Rq~caIESaar~nP~~~V~ils~t  202 (445)
                      -+..+-.+|++|.  .|+.+.-.|..+.+.+||+++.+|.+.
T Consensus        94 I~K~IH~IWIgG~--~Pd~~~~YI~~wl~~~~dy~~~lW~D~  133 (542)
T d2bvla1          94 VEKNLHFVWIGGQ--INDTAINYINQWKDVNSDYNVNVFYDS  133 (542)
T ss_dssp             CCSEEEEECCSSC--CCHHHHHHHHHHHHHCTTSEEEEEECT
T ss_pred             cCCceEEEEeCCC--CCcchHHHHHHHHHHCCCCeEEEEECC
Confidence            4666888999875  889999999999999999999999874



>d2vk9a1 c.68.1.22 (A:2-541) Alpha-toxin {Clostridium novyi [TaxId: 1542]} Back     information, alignment and structure
>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]} Back     information, alignment and structure