Citrus Sinensis ID: 013322
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 445 | ||||||
| 255555985 | 364 | lactosylceramide 4-alpha-galactosyltrans | 0.793 | 0.969 | 0.679 | 1e-136 | |
| 224113967 | 308 | predicted protein [Populus trichocarpa] | 0.674 | 0.974 | 0.713 | 1e-128 | |
| 359497312 | 451 | PREDICTED: uncharacterized protein At4g1 | 0.928 | 0.915 | 0.589 | 1e-128 | |
| 224078926 | 308 | predicted protein [Populus trichocarpa] | 0.683 | 0.987 | 0.677 | 1e-123 | |
| 356546655 | 421 | PREDICTED: uncharacterized protein At4g1 | 0.896 | 0.947 | 0.562 | 1e-117 | |
| 357446543 | 439 | Lactosylceramide 4-alpha-galactosyltrans | 0.914 | 0.927 | 0.549 | 1e-113 | |
| 297840457 | 436 | alpha 1,4-glycosyltransferase family pro | 0.932 | 0.951 | 0.535 | 1e-106 | |
| 225440658 | 416 | PREDICTED: uncharacterized protein At4g1 | 0.723 | 0.774 | 0.563 | 1e-103 | |
| 297740224 | 495 | unnamed protein product [Vitis vinifera] | 0.723 | 0.650 | 0.563 | 1e-103 | |
| 15219856 | 435 | alpha 1,4-glycosyltransferase-like prote | 0.930 | 0.951 | 0.528 | 1e-103 |
| >gi|255555985|ref|XP_002519027.1| lactosylceramide 4-alpha-galactosyltransferase, putative [Ricinus communis] gi|223541690|gb|EEF43238.1| lactosylceramide 4-alpha-galactosyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 491 bits (1265), Expect = e-136, Method: Compositional matrix adjust.
Identities = 240/353 (67%), Positives = 288/353 (81%)
Query: 89 LYVLREENPPVIPKTHLPPYQKQNFSLVPMNSYLASRPKKARNRRVKFKIPRLGAKSRRF 148
+Y ++EENPPVI KTHLP K S++P+N L SRPKK R+ K+ RLG S++F
Sbjct: 1 MYAVKEENPPVILKTHLPLLPKSAISMMPINYSLVSRPKKVHRHRILNKVLRLGDTSKQF 60
Query: 149 SAIVKGFFQNSSCKIKFFMTWISSLESFGGREFLALESLYKSHPNACLVMVSNSLDSRKG 208
S +K F +S CK++FFMTWISSLESFG RE LA+ESL+KS+PNACLV+VS+S+DS +G
Sbjct: 61 STRIKAFLGSSVCKVRFFMTWISSLESFGDRELLAIESLFKSNPNACLVIVSSSMDSERG 120
Query: 209 RLIFKQFLDNGFKVIAVKPDYDYIFKNTYAQEWFNRLKKGNVDPGLISLGQNLSNLLRLT 268
+ + LD GFKV ++KPD++Y+FKNTYA+ WF+ LKKGNVDPG +SLGQNLSNLLRL
Sbjct: 121 SGLLRPLLDKGFKVASIKPDFNYLFKNTYAESWFSELKKGNVDPGEVSLGQNLSNLLRLA 180
Query: 269 LLYKFGGIYLDTDVIVLKNLSKLRNTIGAQTVDSETKNWTRLNNAVLIFDKNHPLLHKFI 328
LLYKFGG YLDTDVIVLK+ KLRN IGAQT+D ET NW+RLNNAVLIFDK HPLL KFI
Sbjct: 181 LLYKFGGTYLDTDVIVLKSFGKLRNIIGAQTIDLETGNWSRLNNAVLIFDKKHPLLFKFI 240
Query: 329 QEFTLTFDGNKWGHNGPYLVSRVVARVNGRPGFNFTVLPPSAFYPVDWRRVRSFFLGPRS 388
QEF LTF+GNKWGHNGPYLVSRVV+RV+GRPGFNFTVLPPSAFYPV+W R+ S F GPR
Sbjct: 241 QEFALTFNGNKWGHNGPYLVSRVVSRVSGRPGFNFTVLPPSAFYPVNWSRIGSIFRGPRD 300
Query: 389 EQHSKLLHKKLELINRQSFTVHLWNRQSKLLKVEDGSIVNRLILASCIFCNSS 441
E HSK L +KLE I +S VHLWN+QS+ +KVE+GSI+N +IL SCIFCN+S
Sbjct: 301 ELHSKWLQRKLEQIKGESLAVHLWNKQSRQIKVENGSIINHIILDSCIFCNAS 353
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224113967|ref|XP_002316629.1| predicted protein [Populus trichocarpa] gi|222859694|gb|EEE97241.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|359497312|ref|XP_003635482.1| PREDICTED: uncharacterized protein At4g19900-like [Vitis vinifera] gi|296088928|emb|CBI38494.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|224078926|ref|XP_002305683.1| predicted protein [Populus trichocarpa] gi|222848647|gb|EEE86194.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|356546655|ref|XP_003541739.1| PREDICTED: uncharacterized protein At4g19900-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|357446543|ref|XP_003593549.1| Lactosylceramide 4-alpha-galactosyltransferase [Medicago truncatula] gi|355482597|gb|AES63800.1| Lactosylceramide 4-alpha-galactosyltransferase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|297840457|ref|XP_002888110.1| alpha 1,4-glycosyltransferase family protein [Arabidopsis lyrata subsp. lyrata] gi|297333951|gb|EFH64369.1| alpha 1,4-glycosyltransferase family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
| >gi|225440658|ref|XP_002274455.1| PREDICTED: uncharacterized protein At4g19900-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|297740224|emb|CBI30406.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|15219856|ref|NP_176300.1| alpha 1,4-glycosyltransferase-like protein [Arabidopsis thaliana] gi|12323337|gb|AAG51645.1|AC018908_11 hypothetical protein; 81821-83128 [Arabidopsis thaliana] gi|332195650|gb|AEE33771.1| alpha 1,4-glycosyltransferase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 445 | ||||||
| TAIR|locus:2206006 | 435 | AT1G61050 [Arabidopsis thalian | 0.925 | 0.947 | 0.474 | 6.6e-97 | |
| TAIR|locus:2095264 | 411 | AT3G09020 [Arabidopsis thalian | 0.786 | 0.851 | 0.432 | 6.8e-79 | |
| TAIR|locus:2042897 | 405 | AT2G38150 [Arabidopsis thalian | 0.705 | 0.775 | 0.44 | 2.7e-77 | |
| TAIR|locus:2150104 | 407 | AT5G01250 [Arabidopsis thalian | 0.649 | 0.710 | 0.486 | 3.1e-76 | |
| TAIR|locus:4010713690 | 380 | AT2G38152 [Arabidopsis thalian | 0.622 | 0.728 | 0.496 | 1.1e-73 | |
| RGD|621583 | 360 | A4galt "alpha 1,4-galactosyltr | 0.514 | 0.636 | 0.298 | 3.9e-21 | |
| UNIPROTKB|G3MZ03 | 368 | LOC618369 "Uncharacterized pro | 0.494 | 0.597 | 0.282 | 5.6e-21 | |
| UNIPROTKB|Q9N290 | 327 | A4GALT "Lactosylceramide 4-alp | 0.514 | 0.700 | 0.283 | 1.2e-20 | |
| UNIPROTKB|Q9NPC4 | 353 | A4GALT "Lactosylceramide 4-alp | 0.514 | 0.648 | 0.287 | 1.5e-20 | |
| UNIPROTKB|Q9N291 | 353 | A4GALT "Lactosylceramide 4-alp | 0.514 | 0.648 | 0.287 | 2.4e-20 |
| TAIR|locus:2206006 AT1G61050 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 963 (344.1 bits), Expect = 6.6e-97, P = 6.6e-97
Identities = 204/430 (47%), Positives = 263/430 (61%)
Query: 18 LQNIKRSFFAFXXXXXXXXXXXXXXXXXVYNGSFVFYID-IPSFPAR--ISPVPAKFPPE 74
+Q +KR +F +YN VF + +P+ P + +SP +
Sbjct: 13 VQRLKRLIVSFVFCLPMSLLGLLLMLLLIYNSFSVFSLHLVPNQPIQSTLSPTHLQILHH 72
Query: 75 KVAGESLPKFASSALYVLREENPPVIPKTHLPPYQKQNFSLVPMNSYLASRPKKARNRRV 134
+ + S SS L V++E T L QKQN S + +R K
Sbjct: 73 QTSTSSSVS-DSSLLLVVKE--------TSLGFIQKQNVSSTRIEK--KTRRFKRSTELT 121
Query: 135 KFKIPRLGAKSR-RFSAIVKGFFQNSSCKIKFFMTWISSLESFGGREFLALESLYKSHPN 193
RL KSR RF VK SSC+ FFMTWISS+ESFG RE +ESL+K HPN
Sbjct: 122 PAITQRLQVKSRQRFQTRVKSLLSKSSCESLFFMTWISSIESFGDRERFTIESLFKFHPN 181
Query: 194 ACLVMVSNSLDSRKGRLIFKQFLDNGFKVIAVKPDYDYIFKNTYAQEWFNRLKKGNVDPG 253
CL++VSNS D +G LI K F D G KV+ +KPD+ YIFK+T A++WF RLKKG + PG
Sbjct: 182 GCLILVSNSFDCDRGTLILKPFTDKGLKVLPIKPDFAYIFKDTSAEKWFERLKKGTLSPG 241
Query: 254 LIXXXXXXXXXXXXXXXYKFGGIYLDTDVIVLKNLSKLRNTIGAQTVDSETKNWTRLNNA 313
+I YK+GGIYLDTDVI+LK+LS L N IGAQTVD TK W+RLNNA
Sbjct: 242 VIPLEQNLSNLLRLVLLYKYGGIYLDTDVIILKSLSNLHNVIGAQTVDPVTKKWSRLNNA 301
Query: 314 VLIFDKNHPLLHKFIQEFTLTFDGNKWGHNGPYLVSRVVARV--NGRPGFNFTVLPPSAF 371
VLIFDKNHPLL +FI EF+ TF+GNKWGHNGPYLVSRV+ R+ + F+VLPPSAF
Sbjct: 302 VLIFDKNHPLLKRFIDEFSRTFNGNKWGHNGPYLVSRVITRIKISSSSDLGFSVLPPSAF 361
Query: 372 YPVDWRRVRSFFLGPRSEQHSKLLHKKLELINRQSFTVHLWNRQSKLLKVEDGSIVNRLI 431
YPVDW R++ F+ P +E + L K+L + + +F VHLWNR+SK L++E+GSI+++L+
Sbjct: 362 YPVDWTRIKGFYRAPTNESDA-WLRKRLTHLRKNTFAVHLWNRESKKLRIEEGSIIHQLM 420
Query: 432 LASCIFCNSS 441
SCIFCNSS
Sbjct: 421 SHSCIFCNSS 430
|
|
| TAIR|locus:2095264 AT3G09020 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2042897 AT2G38150 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2150104 AT5G01250 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:4010713690 AT2G38152 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| RGD|621583 A4galt "alpha 1,4-galactosyltransferase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|G3MZ03 LOC618369 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q9N290 A4GALT "Lactosylceramide 4-alpha-galactosyltransferase" [Gorilla gorilla gorilla (taxid:9595)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q9NPC4 A4GALT "Lactosylceramide 4-alpha-galactosyltransferase" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q9N291 A4GALT "Lactosylceramide 4-alpha-galactosyltransferase" [Pan troglodytes (taxid:9598)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| GSVIVG00010277001 | SubName- Full=Chromosome undetermined scaffold_252, whole genome shotgun sequence; (465 aa) | ||||||||||
(Vitis vinifera) | |||||||||||
| GSVIVG00029535001 | • | 0.899 | |||||||||
| GSVIVG00003707001 | • | 0.899 | |||||||||
| GSVIVG00034182001 | • | 0.800 | |||||||||
| GSVIVG00030925001 | • | 0.800 |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 445 | |||
| pfam04572 | 135 | pfam04572, Gb3_synth, Alpha 1,4-glycosyltransferas | 1e-35 | |
| pfam04488 | 93 | pfam04488, Gly_transf_sug, Glycosyltransferase sug | 8e-17 |
| >gnl|CDD|146960 pfam04572, Gb3_synth, Alpha 1,4-glycosyltransferase conserved region | Back alignment and domain information |
|---|
Score = 128 bits (323), Expect = 1e-35
Identities = 54/139 (38%), Positives = 76/139 (54%), Gaps = 19/139 (13%)
Query: 315 LIFDKNHPLLHKFIQEFTLTFDGNKWGHNGPYLVSRVVARVNGRPGF---------NFTV 365
+ F+ +HPL +++F F+GNKWGHNGP LV+RV+ + F FTV
Sbjct: 1 MNFEPHHPLAEMCLRDFAANFNGNKWGHNGPGLVTRVLRKWCNTGDFAGMTRLRCGGFTV 60
Query: 366 LPPSAFYPVDWRRVRSFFLGPRSEQHSKLLHKKLELINRQSFTVHLWNRQSKLLKVEDGS 425
LPP AFYP+ W + + FF PR E+ + ++S+ VHLWN+ SK LKVE+GS
Sbjct: 61 LPPDAFYPIPWPQWKKFFEEPRLEETMNWV--------KESYAVHLWNKASKGLKVEEGS 112
Query: 426 IVNRLILAS--CIFCNSSL 442
V LA C ++
Sbjct: 113 RVAYGTLAEQHCPRVYNAC 131
|
The glycosphingolipids (GSL) form part of eukaryotic cell membranes. They consist of a hydrophilic carbohydrate moiety linked to a hydrophobic ceramide tail embedded within the lipid bilayer of the membrane. Lactosylceramide, Gal1,4Glc1Cer (LacCer), is the common synthetic precursor to the majority of GSL found in vertebrates. Alpha 1.4-glycosyltransferases utilise UDP donors and transfer the sugar to a beta-linked acceptor. This region appears to be confined to higher eukaryotes. No function has been yet assigned to this region. Length = 135 |
| >gnl|CDD|218109 pfam04488, Gly_transf_sug, Glycosyltransferase sugar-binding region containing DXD motif | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 445 | |||
| KOG1928 | 409 | consensus Alpha-1,4-N-acetylglucosaminyltransferas | 100.0 | |
| PF04572 | 135 | Gb3_synth: Alpha 1,4-glycosyltransferase conserved | 99.95 | |
| PF04488 | 103 | Gly_transf_sug: Glycosyltransferase sugar-binding | 99.78 | |
| PF05704 | 276 | Caps_synth: Capsular polysaccharide synthesis prot | 99.76 | |
| COG3774 | 347 | OCH1 Mannosyltransferase OCH1 and related enzymes | 99.66 | |
| PF12919 | 514 | TcdA_TcdB: TcdA/TcdB catalytic glycosyltransferase | 97.49 | |
| cd04194 | 248 | GT8_A4GalT_like A4GalT_like proteins catalyze the | 95.0 | |
| cd02537 | 240 | GT8_Glycogenin Glycogenin belongs the GT 8 family | 94.98 | |
| PRK15171 | 334 | lipopolysaccharide 1,3-galactosyltransferase; Prov | 94.97 | |
| PRK15382 | 326 | non-LEE encoded effector protein NleB; Provisional | 92.7 | |
| PRK15383 | 335 | type III secretion system protein; Provisional | 92.48 | |
| PRK15384 | 336 | type III secretion system protein; Provisional | 91.97 | |
| cd06914 | 278 | GT8_GNT1 GNT1 is a fungal enzyme that belongs to t | 91.01 | |
| cd06429 | 257 | GT8_like_1 GT8_like_1 represents a subfamily of GT | 88.94 | |
| cd06432 | 248 | GT8_HUGT1_C_like The C-terminal domain of HUGT1-li | 85.63 | |
| PF01501 | 250 | Glyco_transf_8: Glycosyl transferase family 8; Int | 83.66 | |
| cd00505 | 246 | Glyco_transf_8 Members of glycosyltransferase fami | 82.43 |
| >KOG1928 consensus Alpha-1,4-N-acetylglucosaminyltransferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-73 Score=568.00 Aligned_cols=398 Identities=43% Similarity=0.724 Sum_probs=341.5
Q ss_pred HHHHHHhHHhHhhhhhccchHHHHHHHHHHHHhccEEEEEEEcCCCCCCCCCCCCCCCCCcccCCCccccccchhhhhhc
Q 013322 15 LHRLQNIKRSFFAFLFCLPTSLLALLLILLLVYNGSFVFYIDIPSFPARISPVPAKFPPEKVAGESLPKFASSALYVLRE 94 (445)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (445)
.+++++++|.+.|..+ |+|++...++.+.+++ .+-++.+++- ..++|.+++.... ++++-.++
T Consensus 9 ~~~~~~~~rl~~s~~~-l~~~~~~~~~~~~~~~-~~l~~~~~v~----------~~~~~~~~~~~i~-----~~~~~~~~ 71 (409)
T KOG1928|consen 9 VLLVLDLRRLNRSGSS-LFTAFAPMLLDLDSVT-TLLVSNLSVV----------RDFSPPFVLIEIL-----SVVPSLPV 71 (409)
T ss_pred hhhhHhHHHHhhcccc-cchhhhhhhhhhceee-EEEEccceee----------eccCCcceEEEec-----cccccccc
Confidence 4678999999999999 9999999999999999 7777766653 2333444433322 33222222
Q ss_pred cCCCCCCCCCCCCCccccc-cccCCCcccccchhhhhhcccceecccCCccchhHhHHHhhhccCCCcccceeeeeccCC
Q 013322 95 ENPPVIPKTHLPPYQKQNF-SLVPMNSYLASRPKKARNRRVKFKIPRLGAKSRRFSAIVKGFFQNSSCKIKFFMTWISSL 173 (445)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ff~~~~c~~~~~m~W~s~~ 173 (445)
+|. -..+++...+ +...+.....++ +++.+++++++...++.|+.|+..||..+ |+.+|||+|+|+.
T Consensus 72 ~~e------~~~~~~~~~~~~~~q~~~~~~e~-----~~l~e~~~~~s~~~~~sf~~~~~~~~~~~-c~~~~fm~w~S~~ 139 (409)
T KOG1928|consen 72 SNE------FELLFSVGRSLSLKQKTTVNGEK-----IELQELENLSSELKSPSFQSRVNSFFRKE-CSVRFFMTWISPA 139 (409)
T ss_pred cch------hhhhcchhhhhhheeeeeecccc-----chhhheeeccccccCcccCCCcchhhccC-CceeEEEEecccc
Confidence 221 2223332222 332222222222 45778899999999999999999999776 9999999999999
Q ss_pred CCchhHHHHHHHHHHHHCCCCEEEEEeCCCCCCcchhhHHhhhhcCcceEEeCCChhhhhhcCcHHHHHHHhhcCCcCCC
Q 013322 174 ESFGGREFLALESLYKSHPNACLVMVSNSLDSRKGRLIFKQFLDNGFKVIAVKPDYDYIFKNTYAQEWFNRLKKGNVDPG 253 (445)
Q Consensus 174 ~~l~~Rq~caIESaar~nP~~~V~ils~t~~~~~g~~~l~~ll~~~~nv~v~~pdl~~lf~~TPl~~W~~~~~~g~~~~~ 253 (445)
+.++.||+|||||||++||++||+|+|+++++..|..++++|+++++++..+.||+..++++||.+.|++++++|+.+++
T Consensus 140 ~~f~~r~~~sIESa~k~hP~~cv~vls~t~ds~~~~s~~kp~~~~~lsv~~v~~~lp~llk~t~~e~~l~~~k~g~~~~~ 219 (409)
T KOG1928|consen 140 ESFGVREMCSIESAFKTHPEGCVVVLSKTMDSPNGYSILKPFLDSGLSVIAVTPDLPFLLKDTPGETWLERWKDGRLDPG 219 (409)
T ss_pred cCCChhhhhhhHHHHhhCCCceEEEEEccccCCCCccccccHhHhhhhhcccccCchhhHhhCccccHHHHHHhcccCCC
Confidence 99999999999999999999999999999998889899999999999999999999999999999999999999999999
Q ss_pred CccchhhhHhHHHHHHHHHcCcEEEeCCceecccchhhhhhhcccccccCCCCcccccceEEEecCCCHHHHHHHHHHHH
Q 013322 254 LISLGQNLSNLLRLTLLYKFGGIYLDTDVIVLKNLSKLRNTIGAQTVDSETKNWTRLNNAVLIFDKNHPLLHKFIQEFTL 333 (445)
Q Consensus 254 ~i~~~a~~SD~lR~~lLykyGGIYLD~Dvi~lkpld~l~n~ig~e~~~~~~~~~~~l~Navm~a~~~hpfl~~~L~~~~~ 333 (445)
++++.++.||+.|+++||||||||||||||++|++..+.|.+|.. +....|.++|||||+++++|||+.+||++|+.
T Consensus 220 ~~~l~~~lSdl~RLA~LyKYGGvYLDTDvIvLksl~~l~N~ig~~---~~~~~~~~lnnavl~F~k~Hpfl~~cl~eF~~ 296 (409)
T KOG1928|consen 220 KIPLLQNLSDLSRLALLYKYGGVYLDTDVIVLKSLSNLRNVIGVD---PATQAWTRLNNAVLIFDKNHPFLLECLREFAL 296 (409)
T ss_pred cccchhhHHHHHHHHHHHHhCCEEeeccEEEeccccccccccccc---chhhHHHhhcCceeecCCCCHHHHHHHHHHHH
Confidence 999989999999999999999999999999999999999999922 23356889999999999999999999999999
Q ss_pred hcCCCCcCccCcHHHHHHHHHHhCCCCCceeeCCCCccccCCcchhhccccCCCcchhhhHHHHHhhhhcCceEEEEeec
Q 013322 334 TFDGNKWGHNGPYLVSRVVARVNGRPGFNFTVLPPSAFYPVDWRRVRSFFLGPRSEQHSKLLHKKLELINRQSFTVHLWN 413 (445)
Q Consensus 334 ~yd~~~w~~tGP~llTrvl~~~~~~~~~~i~VlP~~~FyPi~w~~~~~~F~~~~~~~~~~w~~~~l~~i~~~SyaIHlWn 413 (445)
+|||++||++||+++|||++++|+.++.+++|.|+.+|||++|.++..||..|..+-++.|..++..++.++||++|+||
T Consensus 297 tfNg~~WG~NGP~LvTRVakr~c~~~~~~~~i~~p~~f~~vn~~~i~~fy~iP~~ew~~~~~~~~~~~~~k~Sy~vHlWN 376 (409)
T KOG1928|consen 297 TYNGNIWGHNGPYLVTRVAKRWCNTKNYNLTILPPSAFYPVNWLEIQAFYAIPWTEWDRKFVDEETLKMLKNSYAVHLWN 376 (409)
T ss_pred hccccccccCCcHHHHHHHHHHhCCCCccceecCccccCceeeeccccccccchhHhhhhhhHHHHHHHhccCeEEEeee
Confidence 99999999999999999999999998888999999999999999999999988887777777778888999999999999
Q ss_pred CCcccCccCCCcHHHHHHHHhCCCCCCcCCC
Q 013322 414 RQSKLLKVEDGSIVNRLILASCIFCNSSLST 444 (445)
Q Consensus 414 k~~r~~~i~~gS~~~~L~~~~Cp~c~~~~~~ 444 (445)
+.+++++++.||+++.|+++|||+|.+.+..
T Consensus 377 k~S~k~~ie~gS~~~~L~s~~Cp~~~~~s~~ 407 (409)
T KOG1928|consen 377 KFSRKLKIEEGSAVAKLVSKHCPRCYSATGE 407 (409)
T ss_pred ccccccccccchHHHHHHHhcCCcccchhhc
Confidence 9999999999999999999999999986543
|
|
| >PF04572 Gb3_synth: Alpha 1,4-glycosyltransferase conserved region; InterPro: IPR007652 The glycosphingolipids (GSL) form part of eukaryotic cell membranes | Back alignment and domain information |
|---|
| >PF04488 Gly_transf_sug: Glycosyltransferase sugar-binding region containing DXD motif ; InterPro: IPR007577 This entry represents those sugar-binding regions of glycosyltransferases that contain a DXD motif | Back alignment and domain information |
|---|
| >PF05704 Caps_synth: Capsular polysaccharide synthesis protein; InterPro: IPR008441 This entry consists of several capsular polysaccharide proteins | Back alignment and domain information |
|---|
| >COG3774 OCH1 Mannosyltransferase OCH1 and related enzymes [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
| >PF12919 TcdA_TcdB: TcdA/TcdB catalytic glycosyltransferase domain; InterPro: IPR024770 Toxins A (TcdA) and B (TcdB) of Clostridium difficile belong to the family of clostridial glucosylating toxins | Back alignment and domain information |
|---|
| >cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface | Back alignment and domain information |
|---|
| >cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen | Back alignment and domain information |
|---|
| >PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional | Back alignment and domain information |
|---|
| >PRK15382 non-LEE encoded effector protein NleB; Provisional | Back alignment and domain information |
|---|
| >PRK15383 type III secretion system protein; Provisional | Back alignment and domain information |
|---|
| >PRK15384 type III secretion system protein; Provisional | Back alignment and domain information |
|---|
| >cd06914 GT8_GNT1 GNT1 is a fungal enzyme that belongs to the GT 8 family | Back alignment and domain information |
|---|
| >cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function | Back alignment and domain information |
|---|
| >cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family | Back alignment and domain information |
|---|
| >PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases | Back alignment and domain information |
|---|
| >cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 445 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 7e-05 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.5 bits (104), Expect = 7e-05
Identities = 63/456 (13%), Positives = 132/456 (28%), Gaps = 144/456 (31%)
Query: 39 LLLILLLVYNGS----FVFYIDIPSFPARISPVPAKFPPEKVAGESLPKFASSALYVLRE 94
L LL FV + ++ F + E + +Y+ +
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLRINYK---------FLMSPIKTEQRQPSMMTRMYIEQR 116
Query: 95 E----NPPVIPKTHLP---PYQK-----------QNFSLVPMN----SYLASRPKKARNR 132
+ + V K ++ PY K +N + + +++A +
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVAL--DVCLSY 174
Query: 133 RVKFKIP------RLGAKSRRFSAIVKGFFQNSSCKIKFFMTWISSLESFGGREFLALES 186
+V+ K+ L +++ +S L + S
Sbjct: 175 KVQCKMDFKIFWLNLK-NCNSPETVLE--MLQKLLYQ--IDPNWTSRSDHSSNIKLRIHS 229
Query: 187 LY---------KSHPNACLVMVSNSLDSRKGRLIFKQFLDNGFKVIAVKPDYDYIFKNTY 237
+ K + N CL+++ N +++ + F + K++ T
Sbjct: 230 IQAELRRLLKSKPYEN-CLLVLLNVQNAK----AWNAF-NLSCKILLT----------TR 273
Query: 238 AQEWFNRLKKGNVDPGLISLGQNLSNLLR---LTLLYKFGGIYLDTDVIVLKNLSKLRNT 294
++ + L ISL + L +LL K YLD L
Sbjct: 274 FKQVTDFLSAATTTH--ISLDHHSMTLTPDEVKSLLLK----YLDCRP------QDLP-- 319
Query: 295 IGAQTVDSETKNWTRLNNAVLIFDKNHPLLHKFI----QEFTLTFDGNKWGHNGPYLVSR 350
E +P I ++ T+D W H ++
Sbjct: 320 -------REVL-------------TTNPRRLSIIAESIRDGLATWDN--WKHVNCDKLTT 357
Query: 351 VVARVNGRPGFNFTVLPPSAFYPVDWRRV-RSFFLGPRSEQHSKLLHKKLELINRQSFTV 409
++ + VL P+ ++R++ + P + + L L
Sbjct: 358 IIES-------SLNVLEPA-----EYRKMFDRLSVFP---PSAHIPTILLSL-------- 394
Query: 410 HLWNRQSKLLKVEDGSIVNRLILASCIFCNSSLSTL 445
+W ++K + +VN+L S + ST+
Sbjct: 395 -IWF---DVIKSDVMVVVNKLHKYSLVEKQPKESTI 426
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 445 | |||
| 2vk9_A | 551 | Alpha-toxin; glycosyltransferase; 2.85A {Clostridi | 98.68 | |
| 2bvl_A | 543 | Toxin B; glycosyltransferase; HET: GLC UDP TBR; 2. | 98.36 | |
| 4dmv_A | 556 | Toxin A, TCDA; transferase; 1.50A {Clostridium dif | 98.1 | |
| 3tzt_A | 276 | Glycosyl transferase family 8; structural genomics | 91.5 | |
| 3u2u_A | 263 | Glycogenin-1, GN-1, GN1; structural genomics, stru | 91.47 | |
| 1g9r_A | 311 | Glycosyl transferase; alpha-beta structure; HET: U | 88.65 | |
| 1ll2_A | 333 | Glycogenin-1; protein-substrate complex, beta-alph | 87.26 | |
| 3jsz_A | 525 | LGT1, putative uncharacterized protein; glucosyltr | 84.45 |
| >2vk9_A Alpha-toxin; glycosyltransferase; 2.85A {Clostridium novyi} SCOP: c.68.1.22 | Back alignment and structure |
|---|
Probab=98.68 E-value=7.2e-08 Score=101.54 Aligned_cols=40 Identities=5% Similarity=0.101 Sum_probs=36.3
Q ss_pred cccceeeeeccCCCCchhHHHHHHHHHHHHCCCCEEEEEeCC
Q 013322 161 CKIKFFMTWISSLESFGGREFLALESLYKSHPNACLVMVSNS 202 (445)
Q Consensus 161 c~~~~~m~W~s~~~~l~~Rq~caIESaar~nP~~~V~ils~t 202 (445)
-+..+-.||.+|. .|..+..+|+||.+++||+++.+|.++
T Consensus 96 IPKiIHyiW~Gg~--~P~~~~~cI~sWkk~~PDYei~lW~D~ 135 (551)
T 2vk9_A 96 ASKNLSFIWIGGP--ISDQSLEYYNMWKMFNKDYNIRLFYDK 135 (551)
T ss_dssp CCSEEEEECCSSC--CCHHHHHHHHHHHHHCTTSEEEEEECT
T ss_pred CCcceEEEEcCCC--CCHHHHHHHHHHHHHCcCCEEEEEecc
Confidence 4678889999997 799999999999999999999999875
|
| >2bvl_A Toxin B; glycosyltransferase; HET: GLC UDP TBR; 2.2A {Clostridium difficile} SCOP: c.68.1.22 PDB: 2bvm_A* 2vkh_A* 2vkd_A* 2vl8_A* | Back alignment and structure |
|---|
| >4dmv_A Toxin A, TCDA; transferase; 1.50A {Clostridium difficile} PDB: 4dmw_A* 3ss1_A 3srz_A | Back alignment and structure |
|---|
| >3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0 | Back alignment and structure |
|---|
| >3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A | Back alignment and structure |
|---|
| >1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A* | Back alignment and structure |
|---|
| >1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A* | Back alignment and structure |
|---|
| >3jsz_A LGT1, putative uncharacterized protein; glucosyltransferase, legionnaire'S disease, legionella pneum transferase; HET: MSE UPG; 1.70A {Legionella pneumophila} PDB: 2wzg_A* 3jt1_A* 2wzf_A* | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 445 | |||
| d2bvla1 | 542 | Toxin B {Clostridium difficile [TaxId: 1496]} | 97.87 | |
| d2vk9a1 | 540 | Alpha-toxin {Clostridium novyi [TaxId: 1542]} | 97.04 | |
| d1ll2a_ | 263 | Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: | 95.93 | |
| d1ga8a_ | 282 | Galactosyltransferase LgtC {Neisseria meningitidis | 94.73 |
| >d2bvla1 c.68.1.22 (A:1-542) Toxin B {Clostridium difficile [TaxId: 1496]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Glycosylating toxin catalytic domain-like domain: Toxin B species: Clostridium difficile [TaxId: 1496]
Probab=97.87 E-value=2.2e-05 Score=80.60 Aligned_cols=40 Identities=8% Similarity=0.186 Sum_probs=35.2
Q ss_pred cccceeeeeccCCCCchhHHHHHHHHHHHHCCCCEEEEEeCC
Q 013322 161 CKIKFFMTWISSLESFGGREFLALESLYKSHPNACLVMVSNS 202 (445)
Q Consensus 161 c~~~~~m~W~s~~~~l~~Rq~caIESaar~nP~~~V~ils~t 202 (445)
-+..+-.+|++|. .|+.+.-.|..+.+.+||+++.+|.+.
T Consensus 94 I~K~IH~IWIgG~--~Pd~~~~YI~~wl~~~~dy~~~lW~D~ 133 (542)
T d2bvla1 94 VEKNLHFVWIGGQ--INDTAINYINQWKDVNSDYNVNVFYDS 133 (542)
T ss_dssp CCSEEEEECCSSC--CCHHHHHHHHHHHHHCTTSEEEEEECT
T ss_pred cCCceEEEEeCCC--CCcchHHHHHHHHHHCCCCeEEEEECC
Confidence 4666888999875 889999999999999999999999874
|
| >d2vk9a1 c.68.1.22 (A:2-541) Alpha-toxin {Clostridium novyi [TaxId: 1542]} | Back information, alignment and structure |
|---|
| >d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
| >d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|